Psyllid ID: psy11649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890
Protein Sequence
MGPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWIEGTVTARNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRREVDMKDKYRTRV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccccccccccccccccccEEEEEEEcccccHHHHHHHHHcccccccccccEEEEEEEEccccccccEEEEEEccccccHHHHHHccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccEEEcccccHHHHHccccccccccccEEEEEcccccHHHHccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHccccccccEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHcccccccccEEEcccccEEEcccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHcccccccHHHHHHHHccccccEEEEEEccccccHHHHHHHccccccccccEEEEEEEEEEccccccccEEEEEEccccccHHHHHHccccccHccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHcccccccccEEEEEccHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEcccccEEEEcccccHHHccccccccccccccccccccccccccHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHHHHHcccccccccEEEcccccEEEEcccccHHHccccccccccHHHEEEEccccccHHHHHHHHcccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHccccccccccHcccccccccEEEEEccccHHccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEcccccEEEccccccHHHccccccccccccccccEEccccccccccEEccccccEEEEEcccccccccEEEcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccHHccccccccEEEEEccccHHccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEcccccEEEEcccccHHHccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGPKSLKDIAIELahgkhpspsssevhkidiqSQERTLLLIGTKSVGKSTLVFRFlekndtpkptLALEYIYARKSGKTVMKDICHlwelgsgtsrLEVASLFSsfsltaqsgFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVrekrgsfehfrtadehrdkglirtfpvpliliggkydlfenlepnkKRIAVQCLRYLAHVngasllfhssldpglvkRTRDILNHYAFSSHLASavnfdynkpifvpfgtdsvasiegtthgkdaslesggrgfnrsrgmkfekkrgwiegtvtarnlepnkKRIAVQCLRYLAHVngasllfhssldpglvkRTRDILNHYAFSSHLASavnfdynkpifvpfgtdsvasiegttqYVTADIChlwelgsgtsrLEVASLFSsfsltaqsgFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVrekrgsfehfrtadehrdkglirtfpvpliliggkydlfedkglirtfpvpliliggkydlfenlepnkKRIAVQCLRYLAHVngasllfhssldpglvkRTRDILNHYAFSSHLASavnfdynkpifvpfgtdsvasiegttqyvTADTEVGRKHLttkyssnsalglmndnplwivipklglhnthhicydhpcnkhvenQGWIIKILKWVVSsrgsfehfrtadehrdkglirtfpvpliliggkydlfedkglirtfpvpliliggkydlfenlepnkKRIAVQCLRYLAHVngasllfhssldpglvkRTRDILNHYAFSSHLASavnfdynkpifvpfgtdsvasiegttqyvtagstssldKYKHIFtthflqddpsqnksksapdpaldqnysepvidSLRNQKLEQLDQMRREVDMkdkyrtrv
Flexible Loop (DISEMBL)
MGPKSLKDIAIELahgkhpspsssevHKIDIQSQERTLLLIGTKSVGKSTLVFrflekndtpkptlALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFesnesvrekrgsfehfrtadehrdkglirtfpVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGtthgkdaslesggrgfnrsrgmkfekkrgwiegtvtarnlepnkKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFesnesvrekrgsfehfrtadehrdkglirtfpvPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYvtadtevgrkHLTTKyssnsalglmnDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFrtadehrdkglirtfpvPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTThflqddpsqnKSKSAPDPALDQNysepvidslrnqkleqldqmrrevdmkdkyrtrv
Low Complexity Region (SEG)
MGPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWIEGTVTARNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRREVDMKDKYRTRV
Disordered region (IsUnstruct)
***********************************RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFES*******************HRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI*****************************RGWIEGTVTARNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFES*******************HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTTHFL******************************************************
Disordered Region (DISOPRED)
****SLK*****************************TLLLIGTKSVGKSTLVFRF******PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIF************************KGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEG*****************************************PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS***********ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIF*************************************************LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRK*******************LWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGS*************************************LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI***************DKYKHIFTT***********************YSEPVIDSLRNQKLEQ******************
Disordered Region (DISEMBL)
MGPKSLKDIAIELAHG*************DIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWIEGTVTARNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTTHFLQD*************ALDQNYSEPVIDSLRNQKLEQLDQMRREVDMKDKYRTRV
Disordered Region (DISPRO)
***KSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT**********GRGFN**RGMKFEKKRGWIEGTVTARNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL******YDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTTHFLQD********SAPDPALDQNYSEPVIDSLRNQKLEQLDQMRREVDMKDK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWIEGTVTARNLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTAGSTSSLDKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRREVDMKDKYRTRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	890	2.2.26 [Sep-21-2011]
Q8K0T2	351	Cytoplasmic dynein 2 ligh	yes	N/A	0.255	0.646	0.373	1e-41
Q32KV4	351	Cytoplasmic dynein 2 ligh	yes	N/A	0.279	0.709	0.354	8e-41
Q6AY43	351	Cytoplasmic dynein 2 ligh	yes	N/A	0.255	0.646	0.369	9e-41
Q7SXY4	358	Cytoplasmic dynein 2 ligh	yes	N/A	0.264	0.656	0.357	1e-40
Q8TCX1	351	Cytoplasmic dynein 2 ligh	yes	N/A	0.255	0.646	0.381	5e-40
Q7XA07	427	Cytoplasmic dynein 2 ligh	N/A	N/A	0.256	0.533	0.297	9e-17

>sp|Q8K0T2|DC2L1_MOUSE Cytoplasmic dynein 2 light intermediate chain 1 OS=Mus musculus GN=Dync2li1 PE=1 SV=1

 Score =  172 bits (435), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 146/241 (60%), Gaps = 14/241 (5%)

Query: 35  ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
           E+++  IG+K+ GK+T++ R L+++++ KPTLALEY Y RK+ G    KDI H WELG G
Sbjct: 31  EKSVFFIGSKNGGKTTIILRCLDRDESAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGG 90

Query: 94  TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
           TS L++ S+    ++     F++VL+LDLS+ N LW+  E  L   ++  +         
Sbjct: 91  TSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWSTMENLLQATKSHVDKVIMKLGKT 148

Query: 145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
           S+++  E R         D H D+ LI  FP+PL++IG KYD+F++ +P K+++  + LR
Sbjct: 149 SSKASAEMRQRMWSVVQKD-HPDRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLR 207

Query: 205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
           ++AH  GASL+F S  +  L+ + R ++N  AF    + ++  D NKP+F+  G DS+  
Sbjct: 208 FVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSLCQ 266

Query: 265 I 265
           I
Sbjct: 267 I 267

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.
Mus musculus (taxid: 10090)

>sp|Q32KV4|DC2L1_BOVIN Cytoplasmic dynein 2 light intermediate chain 1 OS=Bos taurus GN=DYNC2LI1 PE=2 SV=1

 Score =  169 bits (429), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 94/265 (35%), Positives = 156/265 (58%), Gaps = 16/265 (6%)

Query: 12  ELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYI 71
           E+A  +     SSE      +  E+++  IG+K+ GK+T++ R L++++ PKPTLALEY 
Sbjct: 8   EIAKAEVEKRGSSENEGDGAEIGEKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYT 67

Query: 72  YARKS-GKTVMKDICHLWELGSGTSRLEVASL-FSSFSLTAQSGFTLVLMLDLSRLNSLW 129
           Y R++ G  + KDI H WELG GTS L++ S+  +S +L     F++VL+LDLS+ N LW
Sbjct: 68  YGRRTKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRT---FSIVLVLDLSKPNDLW 124

Query: 130 TEAETFLAKFRAIFE---------SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180
              E  L   +   +         ++++  E R         D H D+ L+  FP+PL++
Sbjct: 125 PTMENLLQATKLNIDKVIMKLGKKNSKAASEMRQKMWSNMQKD-HPDRELLDPFPIPLVI 183

Query: 181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 240
           IG KYD+F++ +  K+++  + LR++AH  GASL+F S  +  L+ + R ++N  AF  +
Sbjct: 184 IGSKYDIFQDFDSEKRKVICKTLRFVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIN 242

Query: 241 LASAVNFDYNKPIFVPFGTDSVASI 265
            + ++  D NKP+F+  G DS++ I
Sbjct: 243 KSKSICVDQNKPLFITAGLDSLSQI 267

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.

Bos taurus (taxid: 9913)

>sp|Q6AY43|DC2L1_RAT Cytoplasmic dynein 2 light intermediate chain 1 OS=Rattus norvegicus GN=Dync2li1 PE=1 SV=2

 Score =  169 bits (428), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 89/241 (36%), Positives = 144/241 (59%), Gaps = 14/241 (5%)

Query: 35  ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
           E+++  IG+K+ GK+T++ R L++++  KPTLALEY Y RK+ G    KDI H WELG G
Sbjct: 31  EKSVFFIGSKNGGKTTIILRCLDRDEPAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGG 90

Query: 94  TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
           TS L++ S+    ++     F++VL+LDLS+ N LW   E  L   ++  +         
Sbjct: 91  TSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWPTMENLLQATKSHVDKVTMKLGKA 148

Query: 145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
           ++++  E R         D H D+ LI  FP+PL++IG KYD+F++ +P K+++  + LR
Sbjct: 149 NSKASSEMRQRMWSVMQKD-HPDRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLR 207

Query: 205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
           ++AH  GASL+F S  +  L+ + R ++N  AF    + ++  D NKP+F+  G DS+  
Sbjct: 208 FVAHYYGASLMFTSKSE-ALLLKMRGVINQLAFGIDKSKSMCVDQNKPLFITAGLDSLCQ 266

Query: 265 I 265
           I
Sbjct: 267 I 267

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q7SXY4|DC2L1_DANRE Cytoplasmic dynein 2 light intermediate chain 1 OS=Danio rerio GN=dync2li1 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/257 (35%), Positives = 151/257 (58%), Gaps = 22/257 (8%)

Query: 35  ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
           +RT+  +G+K+ GK+T++ RFLE+++T KPTLALEY + R++ G    KDI HLWELG G
Sbjct: 39  QRTVFFMGSKAGGKTTILLRFLERDETAKPTLALEYTFGRRARGHNTPKDIAHLWELGGG 98

Query: 94  TSRLEVASLFSSFSLTAQ--SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE 151
            S  ++  +     +TA   S  ++VL+LDLS+ N+LW   E+ L   R   E   +  +
Sbjct: 99  ISLSDLVQI----PITADNVSFLSVVLVLDLSKPNALWETMESLLGSARNQVEKVCAALQ 154

Query: 152 KRGSFEHFRTA------DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY 205
           K G     +         ++ D+ LI  FPVPL+++G K+D+F++ +  K+++  + LR+
Sbjct: 155 KTGESRSGKQRVPRVLHKDYPDRELISPFPVPLLIVGSKFDIFQDFDSEKRKVICKTLRF 214

Query: 206 LAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI 265
           LAH  GASL+F SS     + ++R  +N  AF +    +++ D +KP+ +P G+DS++ I
Sbjct: 215 LAHFYGASLIFTSSKSETTMSKSRSFINQLAFGTERPKSISTDPSKPLAIPAGSDSLSQI 274

Query: 266 E---------GTTHGKD 273
                     GT H K+
Sbjct: 275 GPPVATEVDIGTLHAKN 291

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.

Danio rerio (taxid: 7955)

>sp|Q8TCX1|DC2L1_HUMAN Cytoplasmic dynein 2 light intermediate chain 1 OS=Homo sapiens GN=DYNC2LI1 PE=1 SV=1

 Score =  166 bits (421), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 92/241 (38%), Positives = 141/241 (58%), Gaps = 14/241 (5%)

Query: 35  ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
           E+ +  IG+K+ GK+T++ R L++++ PKPTLALEY Y R++ G    KDI H WELG G
Sbjct: 31  EKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWELGGG 90

Query: 94  TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
           TS L++ S+    +      F+LVL+LDLS+ N LW   E  L   ++  +         
Sbjct: 91  TSLLDLISI--PITGDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKT 148

Query: 145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
           + ++V E R    +    D H D  LI  FPVPL++IG KYD+F++ E  K+++  + LR
Sbjct: 149 NAKAVSEMRQKIWNNMPKD-HPDHELIDPFPVPLVIIGSKYDVFQDFESEKRKVICKTLR 207

Query: 205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
           ++AH  GASL+F S  +  L+ + R ++N  AF    + ++  D NKP+F+  G DS   
Sbjct: 208 FVAHYYGASLMFTSKSE-ALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQ 266

Query: 265 I 265
           I
Sbjct: 267 I 267

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q7XA07|DC2L1_CHLRE Cytoplasmic dynein 2 light intermediate chain 1 OS=Chlamydomonas reinhardtii GN=D1BLIC PE=1 SV=1

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 124/272 (45%), Gaps = 44/272 (16%)

Query: 40  LIGTKSVGKSTLVFRFL--EKNDTPKPTLALEYIYARKSGK--TVMKDICHLWELGSGTS 95
            +G+++ GKSTL+ RFL   + + PKP+  +EY YARK        KD+ H+WE+G    
Sbjct: 45  FVGSRAAGKSTLLNRFLYPTRAEVPKPSEGIEYTYARKPAAFDHEKKDLAHIWEVGGSQE 104

Query: 96  RLEVASLFSSFSLTAQSGFTLVLML--DLSR----LNSLWTEAETFLAKFRAIFES---- 145
             E         LTA+   T V+++  DLS     L +L    E    K  + +E     
Sbjct: 105 FAEEIVNSDQLFLTAKQVTTAVVVIVVDLSDPAGVLPTLLYWVEQVKKKLGSTYEKFEKK 164

Query: 146 ----NESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQ 201
                E +R++  S     +A+E  DK  +    + L++   KYD F+N +P  K++  +
Sbjct: 165 GLQLPEQLRQRAKS--KLYSANE--DKDTVYHSGISLVIAATKYDAFKNQDPEVKKVMSR 220

Query: 202 CLRYLAHVNGASLLFHSSL----------DPGLVKRTRDILNHYAFSSHLASAV-----N 246
            LRY+AH +GA L + S L          D  L+     ++NH  F+      V      
Sbjct: 221 VLRYIAHAHGAFLCYLSGLHGASEGSGAEDAALLDNFTRLMNHLIFTGLEKKPVLKMQPQ 280

Query: 247 FDYNKPIFVPFGTDSVASI-------EGTTHG 271
            D+  PI VP G D+  S+       EGT  G
Sbjct: 281 IDHTGPIMVPAGFDTFKSVGRPRSQGEGTVAG 312

Functions as a motor for intraflagellar retrograde transport. Functions in flagellar biogenesis.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	890
242016394	330	conserved hypothetical protein [Pediculu	0.258	0.696	0.415	4e-49
156400842	366	predicted protein [Nematostella vectensi	0.284	0.691	0.359	2e-43
260803982	376	hypothetical protein BRAFLDRAFT_269217 [	0.284	0.672	0.346	4e-42
170036805	344	conserved hypothetical protein [Culex qu	0.285	0.738	0.371	1e-41
390366204	395	PREDICTED: cytoplasmic dynein 2 light in	0.289	0.653	0.349	1e-41
340380847	427	PREDICTED: cytoplasmic dynein 2 light in	0.260	0.543	0.388	3e-41
119114551	339	AGAP010165-PA [Anopheles gambiae str. PE	0.280	0.737	0.362	3e-41
291225840	365	PREDICTED: predicted protein-like [Sacco	0.284	0.693	0.355	4e-41
334312825	409	PREDICTED: cytoplasmic dynein 2 light in	0.252	0.550	0.386	1e-40
350423272	345	PREDICTED: cytoplasmic dynein 2 light in	0.261	0.675	0.384	2e-40

>gi|242016394|ref|XP_002428806.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513503|gb|EEB16068.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  203 bits (516), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 101/243 (41%), Positives = 156/243 (64%), Gaps = 13/243 (5%)

Query: 29  IDIQSQ---ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDIC 85
           +DIQ+    ER+L+++G+KS GKST++ RFL++N+  K TLA+EY + RKSG+++ KDIC
Sbjct: 27  LDIQNTNIGERSLIIVGSKSSGKSTMIQRFLDQNEPVKKTLAMEYNFGRKSGRSLAKDIC 86

Query: 86  HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFES 145
           H+WELG  T+ + + +++    L      TLVL+LDLS   ++W   ET L     I + 
Sbjct: 87  HVWELGGETTFVNLLNVY----LGLNKNTTLVLVLDLSTPETMWNALETILQTSYNILKK 142

Query: 146 NESVREKRGSFEHF--RTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL 203
               +E   +FE+   +  + H D   I  FP+PL+++GGKYDLFE+ EP KK++  + L
Sbjct: 143 ----KEITDTFENCGNKIDESHEDFEYINPFPIPLVIVGGKYDLFESFEPEKKKLICRTL 198

Query: 204 RYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVA 263
           R +AH  GASLLF+S  D  LVK+ +DI +H+ F+       + DYNKP+ +P+G DS +
Sbjct: 199 RQVAHSQGASLLFYSDKDSNLVKKLKDIFHHHGFNGSQWKGCSMDYNKPLLIPYGADSYS 258

Query: 264 SIE 266
            ++
Sbjct: 259 QLD 261

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156400842|ref|XP_001639001.1| predicted protein [Nematostella vectensis] gi|156226126|gb|EDO46938.1| predicted protein [Nematostella vectensis]

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/278 (35%), Positives = 160/278 (57%), Gaps = 25/278 (8%)

Query: 4   KSLKDIAIE-----LAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEK 58
           K++ D+AIE     L   K      S  H      +E  + LIG+K+ GK+++V RFL++
Sbjct: 8   KTIWDLAIEERDYLLNEAKKKGTQESSPH-----GEEAGIFLIGSKNAGKTSMVLRFLDR 62

Query: 59  NDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLV 117
           ++ PKPT AL+Y + RK+ G  + KD+ H+WELG GT   ++  +    ++ +  G +++
Sbjct: 63  DEVPKPTTALDYTFGRKAKGHNIAKDVGHIWELGGGTFLSKLIDI--PINVDSVRGLSII 120

Query: 118 LMLDLSRLNSLWTEAETFLAKFRA--------IFESNESVREK--RGSFEHFRTADEHRD 167
           + LDLS  N LW   ET L + +         +   N S  +K    ++E F T  +H D
Sbjct: 121 IFLDLSLPNELWHTMETLLNQVKKRVHKVMDELAAKNPSAVQKLRNDAWEKFGT--DHPD 178

Query: 168 KGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKR 227
           K  +  FP+PL ++GGKYD++++ +P K+++  + LR++AH NGA L F S+   GLV R
Sbjct: 179 KSFVEPFPIPLAIVGGKYDIYQDFDPEKRKMISRALRFIAHCNGAHLQFFSTKTEGLVGR 238

Query: 228 TRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI 265
           +R ++ H  F + L  A+  D+NKPI V  G DS+A I
Sbjct: 239 SRGMIGHLLFHTSLGKAIGVDHNKPIIVSAGQDSLAQI 276

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|260803982|ref|XP_002596868.1| hypothetical protein BRAFLDRAFT_269217 [Branchiostoma floridae] gi|229282128|gb|EEN52880.1| hypothetical protein BRAFLDRAFT_269217 [Branchiostoma floridae]

 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 166/280 (59%), Gaps = 27/280 (9%)

Query: 2   GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDT 61
           G  S+ D+AIE  H  H      E  + +  ++E ++LL+G+KS GK++++ RFL++++ 
Sbjct: 20  GVDSIWDLAIETVH--HQEKDGKEGQQENRPAEESSVLLMGSKSSGKTSIILRFLDRDEA 77

Query: 62  PKPTLALEYIYARKSGKTVMKDICHLWELGSGT--SRLEVASLFSSFSLTAQSGFTLVLM 119
            KPT ALE+ + R++   + KD+ ++WELG GT  SRL    + ++ ++ +     ++L+
Sbjct: 78  AKPTTALEFTFGRRARNNLAKDVVNIWELGGGTFLSRL----VDTAINVNSVRQLAVMLV 133

Query: 120 LDLSRLNSLWTEAETFLAKFRAIFESNESVRE------------KRGSFEHFRTADEHRD 167
           LDLSR + LW   ET L + RA   ++ S+ E            ++ ++E +   DEH D
Sbjct: 134 LDLSRPDDLWVTMETLLKQARAA--ADRSITELDKLQPGVKQALRKKAWEKY---DEHPD 188

Query: 168 KGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKR 227
           K ++  FPVPL+++GGKYD+F++ +  K++I  + LR++AH  GASLLF S     L+ R
Sbjct: 189 KEMVDPFPVPLVIVGGKYDVFQDFDSEKRKIICKTLRFVAHNYGASLLFFSLKMKQLIDR 248

Query: 228 TRDILNHYAFSSHLAS--AVNFDYNKPIFVPFGTDSVASI 265
            R + NH +F +      ++  ++NKPI++P G D    I
Sbjct: 249 GRVMFNHLSFGAAAPQLKSMQLEHNKPIYIPAGADGFQQI 288

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170036805|ref|XP_001846252.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167879695|gb|EDS43078.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 156/269 (57%), Gaps = 15/269 (5%)

Query: 4   KSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPK 63
           ++++DIA++L   +  + S      + +   ERT+ ++G+K  GKSTL+ RFL+++D P+
Sbjct: 13  ETIQDIALKLVTEQLKNDS-----HLKVGPSERTIFVLGSKGAGKSTLINRFLDRDDVPR 67

Query: 64  PTLALEYIYARK--SGKTVMKDICHLWELGSGTSRLEVASL-FSSFSLTAQSGFTLVLML 120
           PTLALEY + R+  SG+   K+IC++WELGS  +  ++  + F S  L     F+ V++L
Sbjct: 68  PTLALEYSFGRRTASGQGAQKNICNVWELGSLVNSNQLIEVPFRSHGLAT---FSAVIVL 124

Query: 121 DLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR--TADEHRDKGLIRTFPVPL 178
           DLS  + LWT+ E  L   +   E N S +E     E  R     +H D   +   P P+
Sbjct: 125 DLSLPDRLWTDLECVLNGLKQALEKNCSSKEIAEMQEAMRQKVGSDHVDLNTLEVLPFPV 184

Query: 179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS 238
           I++GGKYD F+NL+   K+   +CLR +AH  GA+L+F++S +  L K TRD +N+  F 
Sbjct: 185 IIVGGKYDQFQNLDSEIKKHVCRCLRSIAHAIGAALIFYTSKNTALTKMTRDAMNYLGFG 244

Query: 239 --SHLASAVNFDYNKPIFVPFGTDSVASI 265
             S+       D+N PI +PFG DS   I
Sbjct: 245 SPSNPFKTTAADHNGPIVIPFGADSWEKI 273

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390366204|ref|XP_794270.3| PREDICTED: cytoplasmic dynein 2 light intermediate chain 1-like [Strongylocentrotus purpuratus]

 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 162/272 (59%), Gaps = 14/272 (5%)

Query: 4   KSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPK 63
           KS+ DIAI  A  KH + S  +    + +  E  +L IG+K+ GK++++ RFLEK + PK
Sbjct: 39  KSIWDIAILEAEQKHATESKEQGG--EAKGSENHILFIGSKNAGKTSIILRFLEKEEAPK 96

Query: 64  PTLALEYIYARKS-GKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDL 122
           PT+ALEY + R++ G  ++KDICH+WELG GT   ++  +  S      S  +L++++DL
Sbjct: 97  PTIALEYTFGRRAKGHNMVKDICHIWELGGGTFLSQLTEIPLSEDTIMSS--SLMVVMDL 154

Query: 123 SRLNSLWTEAETFLAK--------FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174
           S+   LW   ET +                ++  +++K       R   +H D+ ++  F
Sbjct: 155 SQPYELWHTMETLIKGALDHVEQVISKAARNDPKIQDKIKERAWKRIGIDHPDRDMLDPF 214

Query: 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234
           P+PL+++G KYD++++ +P K+++  + LR++AH  GA+L F S+    L+ RT+++++H
Sbjct: 215 PLPLVIVGTKYDVYQDFDPEKRKVISKTLRFIAHNYGAALQFSSNKTDALMSRTKNLVSH 274

Query: 235 YAFSSHLA-SAVNFDYNKPIFVPFGTDSVASI 265
            AF + L+   ++ D NKPI VPFG DS+  I
Sbjct: 275 LAFGTTLSLKTISIDPNKPISVPFGLDSLEQI 306

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|340380847|ref|XP_003388933.1| PREDICTED: cytoplasmic dynein 2 light intermediate chain 1-like [Amphimedon queenslandica]

 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/247 (38%), Positives = 148/247 (59%), Gaps = 15/247 (6%)

Query: 30  DIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLW 88
           + +SQE  +  IG K+ GK+TL+ +FLE+ +TPKPT  LEY Y R++ G  + KD+ HLW
Sbjct: 90  ETKSQETNVFFIGCKNSGKTTLILKFLEREETPKPTTGLEYTYGRRTRGMNLAKDVAHLW 149

Query: 89  ELGSGTSRLEVASLFSSFSLTAQ--SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESN 146
           ELG GT      S   +  LT    S  +++++LDLS+ + LW   E+ + + R+  +S 
Sbjct: 150 ELGGGT----FLSQLLNIPLTTDTISNSSVLIILDLSKPDELWDVMESLINELRSRIKSI 205

Query: 147 ES-VREKRGSF--EHFRTADE-----HRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI 198
            S +R    +   +  R A E     H D+ ++   P+P+  IG KYD+F++ +P KK+I
Sbjct: 206 VSDLRSTNPAIVTDLRRKAKEKHGAGHPDEPVLTPLPIPVAFIGTKYDVFQDFDPEKKKI 265

Query: 199 AVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFG 258
             + LR++AH  GASL + S+    LV R R ++ H+AF+  L  AV+ DYNKP+ VP G
Sbjct: 266 ISRTLRFVAHKYGASLYYFSNKSETLVTRCRQVITHFAFNGPLNQAVSMDYNKPLIVPVG 325

Query: 259 TDSVASI 265
           +DS+  I
Sbjct: 326 SDSIGQI 332

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|119114551|ref|XP_319337.3| AGAP010165-PA [Anopheles gambiae str. PEST] gi|116118470|gb|EAA13896.3| AGAP010165-PA [Anopheles gambiae str. PEST]

 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/273 (36%), Positives = 162/273 (59%), Gaps = 23/273 (8%)

Query: 4   KSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPK 63
           ++++DIAI+L   +  + S     ++     ERTL ++G+K VGKSTL+ RFL+++D P+
Sbjct: 7   ETIQDIAIKLVTEQLRNES-----RLATTPTERTLFVLGSKGVGKSTLINRFLDRDDVPR 61

Query: 64  PTLALEYIYARK--SGKTVMKDICHLWELGSGTSRLEVASL-FSSFSLTAQSGFTLVLML 120
           PTLALEY + RK  SG+   K+IC++WELGS  +  ++  +   S  L     F+ ++ML
Sbjct: 62  PTLALEYSFGRKTASGQGAQKNICNVWELGSLANSSQLIEMPIRSHGLQT---FSCIVML 118

Query: 121 DLSRLNSLWTEAETFLAKFR------AIFESNESVREKRGSFEHFRTADEHRDKGLIRTF 174
           DLS+ + LWT+ E+ L   +      A+    E ++E        R   EH D   +  F
Sbjct: 119 DLSQPDRLWTDLESVLNGLKQATAKHAVAGQIEEMKELTAQ----RIGKEHPDLSTLELF 174

Query: 175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234
           P P++++GGKYD+++N +   ++   +CLR +AH  GA+L+++S+ +  L K  RD +NH
Sbjct: 175 PFPIVIVGGKYDIYQNQDSEIRKHVCRCLRSIAHTLGAALVYYSAKNSSLSKLVRDTMNH 234

Query: 235 YAFS--SHLASAVNFDYNKPIFVPFGTDSVASI 265
             F   S+   A +FD++ P+ +PFG DS A I
Sbjct: 235 LGFGSPSNPFRAASFDHSSPLAIPFGADSWARI 267

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291225840|ref|XP_002732906.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]

 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/284 (35%), Positives = 162/284 (57%), Gaps = 31/284 (10%)

Query: 2   GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQE-------RTLLLIGTKSVGKSTLVFR 54
           G ++L DIAI  A       S  + H+ + ++QE        ++  IG+K  GK++++ R
Sbjct: 4   GERNLWDIAINEAE-----ISQRQSHQTEGENQEGLKRGEESSVFFIGSKDAGKTSIILR 58

Query: 55  FLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ-- 111
           FL+K++ PKPT ALEY + R++ G  + KD+ H+WELG GT      S      + A+  
Sbjct: 59  FLDKDEIPKPTTALEYTFGRRAKGHNIAKDVGHIWELGGGT----FLSKLVEIPINAECL 114

Query: 112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE---SNESVRE-------KRGSFEHFRT 161
               +VL+LDLS+ + LW   ET L   R   E    + S+R+       K  ++  F  
Sbjct: 115 ENLAIVLILDLSKPHELWHTMETLLNTTRQRIEKVMQDASMRDSTLQPRMKNKAWSKF-- 172

Query: 162 ADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD 221
            ++H DK +I  FPVPL++IG KYD+F++ +  K+++  + LR++AH +GA+L F S   
Sbjct: 173 GEDHPDKDMIEPFPVPLVIIGCKYDVFQDFDSEKRKVICRTLRFVAHSHGATLQFCSLKT 232

Query: 222 PGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI 265
             LV RTR +++H+ F++  + A+  D NKP+ VP G DS+  I
Sbjct: 233 ESLVTRTRQLISHFVFNTASSKAMAVDPNKPVIVPAGMDSLQQI 276

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|334312825|ref|XP_001382193.2| PREDICTED: cytoplasmic dynein 2 light intermediate chain 1-like [Monodelphis domestica]

 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 149/243 (61%), Gaps = 18/243 (7%)

Query: 35  ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
           E+++  IG+K+ GK+T++ R L++++ PKPTLALEY Y R++ G    KDI H WELG G
Sbjct: 89  EKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWELGGG 148

Query: 94  TSRLEVASLFSSFSLTAQS--GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE------- 144
           TS L++ S+     +T +S   F+LVL+LDLS+ N LW   E+ L   +A  +       
Sbjct: 149 TSLLDLISI----PITNESLRTFSLVLVLDLSKPNDLWPTMESLLQVTKAHVDKLIMKLG 204

Query: 145 --SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC 202
             S ++  E R         D H D+ LI  FP+PL++IG KYD+F++ +  K++I  + 
Sbjct: 205 KTSTKAASEMRQKMWSNMQKD-HPDRELIDPFPIPLVIIGSKYDIFQDFDSEKRKIICKT 263

Query: 203 LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSV 262
           LR+++H  GASL+F S  +  L+ + R ++N  AF    + +++ D NKP+F+P G DS+
Sbjct: 264 LRFVSHYYGASLMFASKSE-ALLLKIRGVINQLAFGIDKSKSISVDQNKPLFIPAGLDSL 322

Query: 263 ASI 265
           + I
Sbjct: 323 SQI 325

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350423272|ref|XP_003493427.1| PREDICTED: cytoplasmic dynein 2 light intermediate chain 1-like [Bombus impatiens]

 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/239 (38%), Positives = 149/239 (62%), Gaps = 6/239 (2%)

Query: 31  IQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWEL 90
           I++ ER+ +++G+K VGK+T+V RFLEK++ PKPT+A++Y + RK+GK+++K+I H+WE+
Sbjct: 30  IETHERSFIIVGSKRVGKTTIVHRFLEKDEAPKPTIAMDYSFGRKAGKSLIKNIVHVWEV 89

Query: 91  GSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR 150
           G  TS L  A++  S    +    T+++MLDLS+   LWT   TF   F  +  + +   
Sbjct: 90  GHLTSSLVSAAMTGSSLTHSPHHVTVLIMLDLSQPEILWT---TFEEAFSVVRNAMKMSY 146

Query: 151 EKRGSFEHFRTADEHRDKGLIRT---FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA 207
           + +   E  +   + R K + R    FP+ L LIGGKYD F++L  +K  +  + LR  A
Sbjct: 147 DDKIIQELKQQRIKERKKAVEREVDPFPMKLCLIGGKYDQFKDLSLDKIELVGKILRATA 206

Query: 208 HVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIE 266
           HV GA L +HS+ D  L++RT+D+L+HY F    +     D+ KP+ +  G DS++SI+
Sbjct: 207 HVLGAGLYYHSAKDKSLLRRTKDLLSHYGFGIQFSDTKCTDFEKPLAISAGADSLSSID 265

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	890
ZFIN|ZDB-GENE-040426-1230	358	dync2li1 "dynein, cytoplasmic	0.288	0.717	0.346	3.9e-39
UNIPROTKB|Q32KV4	351	DYNC2LI1 "Cytoplasmic dynein 2	0.279	0.709	0.366	2.4e-39
MGI|MGI:1913996	351	Dync2li1 "dynein cytoplasmic 2	0.255	0.646	0.377	6.4e-39
RGD|1310286	351	Dync2li1 "dynein cytoplasmic 2	0.255	0.646	0.373	3.6e-38
UNIPROTKB|Q8TCX1	351	DYNC2LI1 "Cytoplasmic dynein 2	0.255	0.646	0.394	4.6e-38
UNIPROTKB|E2R699	348	DYNC2LI1 "Uncharacterized prot	0.253	0.649	0.371	6e-38
UNIPROTKB|F1NGV6	353	DYNC2LI1 "Uncharacterized prot	0.266	0.671	0.361	2.6e-37
WB|WBGene00006960	370	xbx-1 [Caenorhabditis elegans	0.256	0.616	0.326	3.6e-28
UNIPROTKB|F8W853	225	DYNC2LI1 "Cytoplasmic dynein 2	0.185	0.733	0.348	1.1e-20
UNIPROTKB|Q7XA07	427	D1BLIC "Cytoplasmic dynein 2 l	0.264	0.550	0.300	1e-16

ZFIN|ZDB-GENE-040426-1230 dync2li1 "dynein, cytoplasmic 2, light intermediate chain 1" [Danio rerio (taxid:7955)]

 Score = 427 (155.4 bits), Expect = 3.9e-39, P = 3.9e-39
 Identities = 94/271 (34%), Positives = 155/271 (57%)

Query:     5 SLKDIAIELAHGKHPSPSSSEVHKIDIQ-SQERTLLLIGTKSVGKSTLVFRFLEKNDTPK 63
             +L DIA      +       E  + D     +RT+  +G+K+ GK+T++ RFLE+++T K
Sbjct:     8 TLWDIAAAEVRSRESRTDEEEAEEEDAHFPSQRTVFFMGSKAGGKTTILLRFLERDETAK 67

Query:    64 PTLALEYIYARKS-GKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ--SGFTLVLML 120
             PTLALEY + R++ G    KDI HLWELG G S  ++  +     +TA   S  ++VL+L
Sbjct:    68 PTLALEYTFGRRARGHNTPKDIAHLWELGGGISLSDLVQI----PITADNVSFLSVVLVL 123

Query:   121 DLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA------DEHRDKGLIRTF 174
             DLS+ N+LW   E+ L   R   E   +  +K G     +         ++ D+ LI  F
Sbjct:   124 DLSKPNALWETMESLLGSARNQVEKVCAALQKTGESRSGKQRVPRVLHKDYPDRELISPF 183

Query:   175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH 234
             PVPL+++G K+D+F++ +  K+++  + LR+LAH  GASL+F SS     + ++R  +N 
Sbjct:   184 PVPLLIVGSKFDIFQDFDSEKRKVICKTLRFLAHFYGASLIFTSSKSETTMSKSRSFINQ 243

Query:   235 YAFSSHLASAVNFDYNKPIFVPFGTDSVASI 265
              AF +    +++ D +KP+ +P G+DS++ I
Sbjct:   244 LAFGTERPKSISTDPSKPLAIPAGSDSLSQI 274

GO:0042073 "intraflagellar transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IMP

GO:0030286 "dynein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030030 "cell projection organization" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

UNIPROTKB|Q32KV4 DYNC2LI1 "Cytoplasmic dynein 2 light intermediate chain 1" [Bos taurus (taxid:9913)]

 Score = 429 (156.1 bits), Expect = 2.4e-39, P = 2.4e-39
 Identities = 97/265 (36%), Positives = 158/265 (59%)

Query:    12 ELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYI 71
             E+A  +     SSE      +  E+++  IG+K+ GK+T++ R L++++ PKPTLALEY 
Sbjct:     8 EIAKAEVEKRGSSENEGDGAEIGEKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYT 67

Query:    72 YARKS-GKTVMKDICHLWELGSGTSRLEVASL-FSSFSLTAQSGFTLVLMLDLSRLNSLW 129
             Y R++ G  + KDI H WELG GTS L++ S+  +S +L     F++VL+LDLS+ N LW
Sbjct:    68 YGRRTKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRT---FSIVLVLDLSKPNDLW 124

Query:   130 TEAETFL--AKF---RAIFE----SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL 180
                E  L   K    + I +    ++++  E R         D H D+ L+  FP+PL++
Sbjct:   125 PTMENLLQATKLNIDKVIMKLGKKNSKAASEMRQKMWSNMQKD-HPDRELLDPFPIPLVI 183

Query:   181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH 240
             IG KYD+F++ +  K+++  + LR++AH  GASL+F S  +  L+K  R ++N  AF  +
Sbjct:   184 IGSKYDIFQDFDSEKRKVICKTLRFVAHYYGASLMFTSKSEALLLK-IRGVINQLAFGIN 242

Query:   241 LASAVNFDYNKPIFVPFGTDSVASI 265
              + ++  D NKP+F+  G DS++ I
Sbjct:   243 KSKSICVDQNKPLFITAGLDSLSQI 267

GO:0035085 "cilium axoneme" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0030990 "intraflagellar transport particle" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

MGI|MGI:1913996 Dync2li1 "dynein cytoplasmic 2 light intermediate chain 1" [Mus musculus (taxid:10090)]

 Score = 425 (154.7 bits), Expect = 6.4e-39, P = 6.4e-39
 Identities = 91/241 (37%), Positives = 146/241 (60%)

Query:    35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
             E+++  IG+K+ GK+T++ R L+++++ KPTLALEY Y RK+ G    KDI H WELG G
Sbjct:    31 EKSVFFIGSKNGGKTTIILRCLDRDESAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGG 90

Query:    94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
             TS L++ S+    ++     F++VL+LDLS+ N LW+  E  L   ++  +         
Sbjct:    91 TSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWSTMENLLQATKSHVDKVIMKLGKT 148

Query:   145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
             S+++  E R         D H D+ LI  FP+PL++IG KYD+F++ +P K+++  + LR
Sbjct:   149 SSKASAEMRQRMWSVVQKD-HPDRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLR 207

Query:   205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
             ++AH  GASL+F S  +  L+K  R ++N  AF    + ++  D NKP+F+  G DS+  
Sbjct:   208 FVAHYYGASLMFTSKSEALLLK-IRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSLCQ 266

Query:   265 I 265
             I
Sbjct:   267 I 267

GO:0003674 "molecular_function" evidence=ND

GO:0003774 "motor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0030990 "intraflagellar transport particle" evidence=IDA

GO:0031512 "motile primary cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

RGD|1310286 Dync2li1 "dynein cytoplasmic 2 light intermediate chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 3.6e-38, P = 3.6e-38
 Identities = 90/241 (37%), Positives = 144/241 (59%)

Query:    35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
             E+++  IG+K+ GK+T++ R L++++  KPTLALEY Y RK+ G    KDI H WELG G
Sbjct:    31 EKSVFFIGSKNGGKTTIILRCLDRDEPAKPTLALEYTYGRKTKGHNTPKDIAHFWELGGG 90

Query:    94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE--------- 144
             TS L++ S+    ++     F++VL+LDLS+ N LW   E  L   ++  +         
Sbjct:    91 TSLLDLISI--PITVDTLRTFSIVLVLDLSKPNDLWPTMENLLQATKSHVDKVTMKLGKA 148

Query:   145 SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
             ++++  E R         D H D+ LI  FP+PL++IG KYD+F++ +P K+++  + LR
Sbjct:   149 NSKASSEMRQRMWSVMQKD-HPDRELIDPFPIPLVIIGSKYDIFQDFDPEKRKVICKTLR 207

Query:   205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
             ++AH  GASL+F S  +  L+K  R ++N  AF    + ++  D NKP+F+  G DS+  
Sbjct:   208 FVAHYYGASLMFTSKSEALLLKM-RGVINQLAFGIDKSKSMCVDQNKPLFITAGLDSLCQ 266

Query:   265 I 265
             I
Sbjct:   267 I 267

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0030990 "intraflagellar transport particle" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

UNIPROTKB|Q8TCX1 DYNC2LI1 "Cytoplasmic dynein 2 light intermediate chain 1" [Homo sapiens (taxid:9606)]

 Score = 417 (151.9 bits), Expect = 4.6e-38, P = 4.6e-38
 Identities = 95/241 (39%), Positives = 146/241 (60%)

Query:    35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
             E+ +  IG+K+ GK+T++ R L++++ PKPTLALEY Y R++ G    KDI H WELG G
Sbjct:    31 EKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTPKDIAHFWELGGG 90

Query:    94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRA--------IFES 145
             TS L++ S+  +   T ++ F+LVL+LDLS+ N LW   E  L   ++        + ++
Sbjct:    91 TSLLDLISIPITGD-TLRT-FSLVLVLDLSKPNDLWPTMENLLQATKSHVDKVIMKLGKT 148

Query:   146 N-ESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
             N ++V E R    +    D H D  LI  FPVPL++IG KYD+F++ E  K+++  + LR
Sbjct:   149 NAKAVSEMRQKIWNNMPKD-HPDHELIDPFPVPLVIIGSKYDVFQDFESEKRKVICKTLR 207

Query:   205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
             ++AH  GASL+F S  +  L+K  R ++N  AF    + ++  D NKP+F+  G DS   
Sbjct:   208 FVAHYYGASLMFTSKSEALLLK-IRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQ 266

Query:   265 I 265
             I
Sbjct:   267 I 267

GO:0003774 "motor activity" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0045177 "apical part of cell" evidence=ISS

GO:0072372 "primary cilium" evidence=ISS

GO:0005881 "cytoplasmic microtubule" evidence=ISS

GO:0030990 "intraflagellar transport particle" evidence=ISS

GO:0031512 "motile primary cilium" evidence=ISS

GO:0035085 "cilium axoneme" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0005932 "microtubule basal body" evidence=ISS

UNIPROTKB|E2R699 DYNC2LI1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 416 (151.5 bits), Expect = 6.0e-38, P = 6.0e-38
 Identities = 90/242 (37%), Positives = 148/242 (61%)

Query:    35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS-GKTVMKDICHLWELGSG 93
             E+++  IG+K+ GK+T++ R L++++ PKPTLALEY Y R++ G  + KDI H WELG G
Sbjct:    28 EKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNIPKDIAHFWELGGG 87

Query:    94 TSRLEVASL-FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE-------- 144
             TS L++ S+  +S +L     F++VL+LDLS+ N LW   E  L   ++  +        
Sbjct:    88 TSLLDLISIPITSDNLRT---FSIVLVLDLSKPNDLWPTMENLLQATKSHVDKMIMKLGK 144

Query:   145 -SNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL 203
              ++++V E R         D H D+ L+  F +PL++IG KYD+F++ +  K+++  + L
Sbjct:   145 TNSKAVSEMRQKIWSNMQKD-HPDRELVDPFLIPLVIIGSKYDIFQDFDSEKRKVICKTL 203

Query:   204 RYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVA 263
             R++AH  GASL+F S  +  L+K  R ++N  AF    + ++  D NKP+F+  G DS++
Sbjct:   204 RFVAHYYGASLMFTSKSEALLLK-VRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSLS 262

Query:   264 SI 265
              I
Sbjct:   263 QI 264

GO:0005881 "cytoplasmic microtubule" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0072372 "primary cilium" evidence=IDA

GO:0042384 "cilium assembly" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0030990 "intraflagellar transport particle" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

UNIPROTKB|F1NGV6 DYNC2LI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 2.6e-37, P = 2.6e-37
 Identities = 91/252 (36%), Positives = 146/252 (57%)

Query:    35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGK-TVMKDICHLWELGSG 93
             E+++L +G+K+ GK+T++ R LE+ + PKPTL LEY + R++ +    KDI H WE+G G
Sbjct:    32 EKSVLFMGSKNGGKTTIILRCLEREEVPKPTLVLEYTFGRRARRHNAPKDIAHFWEIGGG 91

Query:    94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLA-------KFRAIFESN 146
             TS LE+  +    ++     F +VL+LDLS+ N LW   E  L        K  A  E  
Sbjct:    92 TSLLELIRI--PITVNNIRSFAVVLVLDLSKPNELWMTMENLLQATRNHVNKILAKLEKT 149

Query:   147 --ESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR 204
               E   E +   ++    D H D  L+  FP+PL++IG KYD+F   +   ++I  + LR
Sbjct:   150 DPEVAAEIKQKMQNNLQRD-HPDYDLVDPFPIPLVIIGSKYDIFHEFDSEMRKIISRTLR 208

Query:   205 YLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
             +++H  GASL+F S  +  L+K  R ++NH AF    + +V+ D++KP+F+P G DS++ 
Sbjct:   209 FVSHYYGASLVFTSKSEALLLK-ARALINHLAFGYDRSKSVSVDHSKPLFIPAGLDSLSQ 267

Query:   265 IEGTTHGKDASL 276
             I G     D+++
Sbjct:   268 I-GPPPTSDSNI 278

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0030990 "intraflagellar transport particle" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

WB|WBGene00006960 xbx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 325 (119.5 bits), Expect = 3.6e-28, P = 3.6e-28
 Identities = 77/236 (32%), Positives = 127/236 (53%)

Query:    35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT 94
             E  ++  G +  GKS+ +  FLE+ +  K ++ LEY YAR++   V KDI +LWELG G 
Sbjct:    45 ESHIIFAGNRKSGKSSFMLNFLERKEDLKDSVGLEYTYARRTRGNV-KDIANLWELGGGA 103

Query:    95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNE--SVREK 152
             +  E+ S+    ++      +L+L+LD++ L+ +W   E  +   R + E+ E   +  +
Sbjct:   104 TVTELLSV--PITMKNVEICSLILLLDMTNLDEMWITIEKTVDSVRRLVENLERQDINLQ 161

Query:   153 RGSFEHFRTADEHRDKGLIRTF---PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV 209
                 E  R   E  D G ++     P+P+ ++  KYD F+N E  K+R   Q LR+LA+ 
Sbjct:   162 TRLAEKMRLRLEKYDDGSLKMCNPCPIPVTIVASKYDEFQNFESEKRRHLCQFLRFLAYS 221

Query:   210 NGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI 265
              GA+L+  SS      K  +++ +H+AF +        D+NKP+FV  G DS+ SI
Sbjct:   222 YGANLMMFSSRMEQFPKLVKNMTSHFAFGTVCPQGYMTDHNKPMFVKCGFDSLESI 277

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

UNIPROTKB|F8W853 DYNC2LI1 "Cytoplasmic dynein 2 light intermediate chain 1" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 60/172 (34%), Positives = 93/172 (54%)

Query:   711 DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVK 770
             D  LI  FPVPL++IG KYD+F++ E  K+++  + LR++AH  GASL+F S  +  L+K
Sbjct:    44 DHELIDPFPVPLVIIGSKYDVFQDFESEKRKVICKTLRFVAHYYGASLMFTSKSEALLLK 103

Query:   771 RTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT----TQYVTAGSTSSLDK 826
               R ++N  AF    + ++  D NKP+F+  G DS   I              + S ++ 
Sbjct:   104 -IRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSPPVPENDIGKLHAHSPMEL 162

Query:   827 YKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVIDSLRNQKLEQLDQMRR 878
             +K ++   F     S N  K   DPA D  Y+E  +D +R QK  +L+Q +R
Sbjct:   163 WKKVYEKLF--PPKSINTLKDIKDPARDPQYAENEVDEMRIQKDLELEQYKR 212

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0030990 "intraflagellar transport particle" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

UNIPROTKB|Q7XA07 D1BLIC "Cytoplasmic dynein 2 light intermediate chain 1" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 237 (88.5 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 82/273 (30%), Positives = 127/273 (46%)

Query:    41 IGTKSVGKSTLVFRFL--EKNDTPKPTLALEYIYARKSGKT--VMKDICHLWELGSGTSR 96
             +G+++ GKSTL+ RFL   + + PKP+  +EY YARK        KD+ H+WE+G     
Sbjct:    46 VGSRAAGKSTLLNRFLYPTRAEVPKPSEGIEYTYARKPAAFDHEKKDLAHIWEVGGSQEF 105

Query:    97 LEVASLFSSFSLTAQSGFT--LVLMLDLSR----LNSL--WTE-AETFLAKFRAIFESN- 146
              E         LTA+   T  +V+++DLS     L +L  W E  +  L      FE   
Sbjct:   106 AEEIVNSDQLFLTAKQVTTAVVVIVVDLSDPAGVLPTLLYWVEQVKKKLGSTYEKFEKKG 165

Query:   147 ----ESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC 202
                 E +R++  S     +A+E  DK  +    + L++   KYD F+N +P  K++  + 
Sbjct:   166 LQLPEQLRQRAKS--KLYSANE--DKDTVYHSGISLVIAATKYDAFKNQDPEVKKVMSRV 221

Query:   203 LRYLAHVNGASLLFHSSL----------DPGLVKRTRDILNHYAFSSHLASAV-----NF 247
             LRY+AH +GA L + S L          D  L+     ++NH  F+      V       
Sbjct:   222 LRYIAHAHGAFLCYLSGLHGASEGSGAEDAALLDNFTRLMNHLIFTGLEKKPVLKMQPQI 281

Query:   248 DYNKPIFVPFGTDSVASIEGTTHGKDASLESGG 280
             D+  PI VP G D+  S+ G    +     +GG
Sbjct:   282 DHTGPIMVPAGFDTFKSV-GRPRSQGEGTVAGG 313

GO:0005515 "protein binding" evidence=IPI

GO:0005858 "axonemal dynein complex" evidence=IDA

GO:0030286 "dynein complex" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

GO:0043064 "flagellum organization" evidence=IMP

GO:0005932 "microtubule basal body" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	890
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	0.003

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 56/190 (29%)

Query: 40  LIGTKSVGKSTLVFRFLE--KNDTPKPTLALEY----IYARKSGKTVMKDICHLWELGSG 93
           L+G   +GK++L+ +++E   ++    TL + +    I  R  G  +   I   W+LG  
Sbjct: 5   LLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIR--GTEITFSI---WDLGGQ 59

Query: 94  TSRLEVASLFSSFSLTAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVR 150
              + +  L    ++       ++ M DL+R   LNS+                  E  R
Sbjct: 60  REFINMLPLVCKDAV------AILFMFDLTRKSTLNSI-----------------KEWYR 96

Query: 151 EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKR-IAVQCLRYLAHV 209
           + RG     +TA            P   IL+G KYDLF +L P ++  I  Q  +Y A  
Sbjct: 97  QARG---FNKTA-----------IP---ILVGTKYDLFADLPPEEQEEITKQARKY-AKA 138

Query: 210 NGASLLFHSS 219
             A L+F S+
Sbjct: 139 MKAPLIFCST 148

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	890
KOG3929|consensus	363		100.0
KOG3905|consensus	473		100.0
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	100.0
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.97
KOG3905|consensus	473		99.97
KOG3929|consensus	363		99.96
KOG0084|consensus	205		99.95
KOG0078|consensus	207		99.94
KOG0094|consensus	221		99.93
KOG0092|consensus	200		99.93
KOG0098|consensus	216		99.92
KOG1673|consensus	205		99.92
KOG0394|consensus	210		99.92
KOG0079|consensus	198		99.92
KOG0087|consensus	222		99.91
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.91
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.9
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.9
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.9
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.9
KOG0093|consensus	193		99.9
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.9
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.9
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.89
KOG0091|consensus	213		99.89
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.89
KOG0095|consensus	213		99.89
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.89
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.89
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.89
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.89
KOG0080|consensus	209		99.88
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.88
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.88
KOG0086|consensus	214		99.88
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.88
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.88
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.88
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.88
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.87
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.87
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.87
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.87
COG1163	365	DRG Predicted GTPase [General function prediction	99.87
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.87
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.87
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.87
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.87
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.87
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.87
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.87
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.87
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.86
KOG0088|consensus	218		99.86
KOG0083|consensus	192		99.86
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.86
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.86
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.86
PLN03110	216	Rab GTPase; Provisional	99.86
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.86
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.86
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.86
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.86
PTZ00369	189	Ras-like protein; Provisional	99.86
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.86
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.86
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.86
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.86
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.86
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.85
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.85
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.85
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.85
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.85
KOG0081|consensus	219		99.85
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.85
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.85
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.84
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.84
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.84
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.84
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.84
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.84
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.84
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.83
PLN03108	210	Rab family protein; Provisional	99.83
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.83
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.83
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.83
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.83
PLN03118	211	Rab family protein; Provisional	99.83
KOG0097|consensus	215		99.82
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.82
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.82
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.82
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.82
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.82
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.82
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.81
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.81
PRK03003	472	GTP-binding protein Der; Reviewed	99.81
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.8
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.8
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.8
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.8
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.8
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.8
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.79
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.79
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.79
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.79
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.79
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.79
PLN00223	181	ADP-ribosylation factor; Provisional	99.79
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.78
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.78
PTZ00133	182	ADP-ribosylation factor; Provisional	99.77
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.77
KOG1673|consensus	205		99.77
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.77
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.77
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.77
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.77
KOG0395|consensus	196		99.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.76
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.76
PLN00023	334	GTP-binding protein; Provisional	99.76
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.76
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.76
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.75
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.75
PRK00093	435	GTP-binding protein Der; Reviewed	99.75
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.72
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.72
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.72
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.72
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.71
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.71
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.71
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.69
KOG4252|consensus	246		99.69
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.68
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.68
KOG0393|consensus	198		99.67
PRK12299	335	obgE GTPase CgtA; Reviewed	99.67
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.66
COG1100	219	GTPase SAR1 and related small G proteins [General	99.66
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.66
KOG0073|consensus	185		99.65
PTZ00099	176	rab6; Provisional	99.65
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.65
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.64
PRK04213	201	GTP-binding protein; Provisional	99.64
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.63
PRK03003	472	GTP-binding protein Der; Reviewed	99.63
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.62
KOG1486|consensus	364		99.62
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.61
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.61
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.61
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.61
COG1160	444	Predicted GTPases [General function prediction onl	99.6
PRK15494	339	era GTPase Era; Provisional	99.59
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.59
cd00881	189	GTP_translation_factor GTP translation factor fami	99.58
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.57
PRK12297	424	obgE GTPase CgtA; Reviewed	99.57
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.57
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.56
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.56
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.56
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.56
PRK11058	426	GTPase HflX; Provisional	99.56
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.55
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.55
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.55
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.55
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.54
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.54
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.54
PRK12296	500	obgE GTPase CgtA; Reviewed	99.53
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.51
PRK00089	292	era GTPase Era; Reviewed	99.49
PRK12298	390	obgE GTPase CgtA; Reviewed	99.48
PRK00093	435	GTP-binding protein Der; Reviewed	99.47
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.46
KOG0075|consensus	186		99.46
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.46
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.45
KOG4423|consensus	229		99.44
KOG0096|consensus	216		99.43
KOG3883|consensus	198		99.42
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.41
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.41
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.41
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.4
COG1159	298	Era GTPase [General function prediction only]	99.4
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.4
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.39
CHL00189	742	infB translation initiation factor 2; Provisional	99.38
KOG0070|consensus	181		99.38
COG1160	444	Predicted GTPases [General function prediction onl	99.38
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.37
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.37
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.35
PRK05433	600	GTP-binding protein LepA; Provisional	99.34
PRK05306	787	infB translation initiation factor IF-2; Validated	99.34
COG0486	454	ThdF Predicted GTPase [General function prediction	99.34
PRK12317	425	elongation factor 1-alpha; Reviewed	99.31
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.31
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.28
COG1084	346	Predicted GTPase [General function prediction only	99.28
KOG0071|consensus	180		99.28
KOG1489|consensus	366		99.27
KOG0076|consensus	197		99.27
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.26
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.25
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.25
COG0218	200	Predicted GTPase [General function prediction only	99.25
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.24
COG2262	411	HflX GTPases [General function prediction only]	99.23
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.2
PRK04004	586	translation initiation factor IF-2; Validated	99.17
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.17
COG2229	187	Predicted GTPase [General function prediction only	99.17
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.17
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.16
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.15
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.15
PRK10218	607	GTP-binding protein; Provisional	99.14
COG0536	369	Obg Predicted GTPase [General function prediction	99.13
PRK12735	396	elongation factor Tu; Reviewed	99.09
PRK09602	396	translation-associated GTPase; Reviewed	99.09
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.08
KOG1707|consensus	625		99.07
PRK12736	394	elongation factor Tu; Reviewed	99.07
KOG1423|consensus	379		99.06
KOG1487|consensus	358		99.05
KOG0074|consensus	185		99.05
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.05
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.04
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.04
KOG0072|consensus	182		99.02
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.02
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.02
PRK13351	687	elongation factor G; Reviewed	98.97
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.96
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.95
PLN00043	447	elongation factor 1-alpha; Provisional	98.94
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.94
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.93
CHL00071	409	tufA elongation factor Tu	98.93
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.89
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.89
KOG0090|consensus	238		98.89
PLN03126	478	Elongation factor Tu; Provisional	98.89
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.89
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.88
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.87
PRK00049	396	elongation factor Tu; Reviewed	98.87
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.87
PTZ00258	390	GTP-binding protein; Provisional	98.86
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	98.84
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.84
PLN03127	447	Elongation factor Tu; Provisional	98.83
KOG1490|consensus	620		98.82
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	98.79
PTZ00141	446	elongation factor 1- alpha; Provisional	98.78
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.75
KOG1191|consensus	531		98.72
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.71
PRK12740	668	elongation factor G; Reviewed	98.7
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.7
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.69
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	98.69
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.68
PRK12739	691	elongation factor G; Reviewed	98.68
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.67
COG3596	296	Predicted GTPase [General function prediction only	98.66
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	98.66
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	98.65
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.65
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.65
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.64
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	98.64
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	98.63
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.62
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.62
PRK13768	253	GTPase; Provisional	98.61
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	98.6
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	98.6
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.6
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.59
PLN03110	216	Rab GTPase; Provisional	98.59
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.59
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	98.58
PRK09866	741	hypothetical protein; Provisional	98.58
PTZ00099	176	rab6; Provisional	98.57
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	98.56
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.54
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	98.54
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.54
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.54
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.54
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	98.53
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.53
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.53
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.52
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.52
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	98.52
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	98.5
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.49
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.49
KOG0077|consensus	193		98.48
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	98.48
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	98.48
PRK00007	693	elongation factor G; Reviewed	98.47
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.47
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.47
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	98.47
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.47
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	98.47
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.46
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	98.46
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	98.45
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	98.45
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.44
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	98.44
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.44
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	98.43
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.43
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.42
KOG0462|consensus	650		98.42
PRK14845	1049	translation initiation factor IF-2; Provisional	98.41
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.41
KOG0078|consensus	207		98.41
PTZ00369	189	Ras-like protein; Provisional	98.4
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.4
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.39
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.39
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	98.37
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.36
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	98.36
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.36
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	98.36
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	98.36
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	98.35
KOG3886|consensus	295		98.34
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.34
KOG0087|consensus	222		98.34
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.33
PRK09601	364	GTP-binding protein YchF; Reviewed	98.32
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.32
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	98.32
KOG0084|consensus	205		98.3
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.3
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.29
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.29
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.29
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.28
KOG1145|consensus	683		98.28
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	98.28
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	98.27
KOG0092|consensus	200		98.26
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	98.26
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.25
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.24
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.23
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.23
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	98.23
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.22
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.22
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	98.21
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.21
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.2
KOG0461|consensus	522		98.17
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	98.16
KOG1707|consensus	625		98.16
PLN03108	210	Rab family protein; Provisional	98.15
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	98.14
KOG1532|consensus	366		98.14
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	98.12
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.11
PLN03118	211	Rab family protein; Provisional	98.11
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.1
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.1
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.06
PRK07560	731	elongation factor EF-2; Reviewed	98.05
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.04
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	98.04
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.02
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.02
KOG0410|consensus	410		98.02
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	98.01
KOG0079|consensus	198		97.99
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	97.99
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.98
PRK00098	298	GTPase RsgA; Reviewed	97.97
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	97.95
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	97.93
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	97.91
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	97.9
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	97.9
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	97.89
PTZ00416	836	elongation factor 2; Provisional	97.88
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	97.88
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.85
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	97.84
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.84
KOG0094|consensus	221		97.83
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.78
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.78
PRK12288	347	GTPase RsgA; Reviewed	97.75
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.75
COG3276	447	SelB Selenocysteine-specific translation elongatio	97.74
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.74
PRK12289	352	GTPase RsgA; Reviewed	97.74
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	97.74
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.73
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.71
KOG0093|consensus	193		97.69
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	97.69
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.66
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.64
PLN00223	181	ADP-ribosylation factor; Provisional	97.64
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	97.64
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	97.63
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.62
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.61
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.61
KOG2486|consensus	320		97.61
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.6
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.6
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.6
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.59
KOG1144|consensus	1064		97.58
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	97.58
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.57
PLN00023	334	GTP-binding protein; Provisional	97.57
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	97.55
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.55
KOG0091|consensus	213		97.54
PTZ00133	182	ADP-ribosylation factor; Provisional	97.52
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.5
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.49
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.48
KOG0393|consensus	198		97.47
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.46
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.44
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.43
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.41
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.38
KOG0098|consensus	216		97.37
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.34
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.33
PRK12299	335	obgE GTPase CgtA; Reviewed	97.28
KOG0081|consensus	219		97.27
KOG0458|consensus	603		97.26
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.25
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.25
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.22
smart00178	184	SAR Sar1p-like members of the Ras-family of small	97.22
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	97.21
cd00881	189	GTP_translation_factor GTP translation factor fami	97.17
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.15
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	97.13
KOG0395|consensus	196		97.1
KOG0468|consensus	971		97.09
COG1161	322	Predicted GTPases [General function prediction onl	97.09
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	97.09
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	97.08
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	97.05
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.03
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.02
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.01
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.01
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	97.0
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	96.99
cd01881	176	Obg_like The Obg-like subfamily consists of five w	96.97
KOG2655|consensus	366		96.91
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	96.91
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	96.91
KOG1143|consensus	591		96.9
KOG0705|consensus	749		96.89
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	96.87
KOG1547|consensus	336		96.86
PRK13796	365	GTPase YqeH; Provisional	96.86
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.85
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	96.83
PRK00098	298	GTPase RsgA; Reviewed	96.78
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.76
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	96.76
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.74
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	96.72
PRK01889	356	GTPase RsgA; Reviewed	96.71
KOG0082|consensus	354		96.66
KOG0088|consensus	218		96.63

>KOG3929|consensus

Probab=100.00  E-value=9.2e-65  Score=521.97  Aligned_cols=275  Identities=32%  Similarity=0.520  Sum_probs=244.4

Q ss_pred             cccccCceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccc
Q psy11649        385 TQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSF  464 (890)
Q Consensus       385 ~~~~~kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~  464 (890)
                      +..-+|||+|+|||||+.+..+||.+  |++-.+++.+++|+|+|||+|..+|.+||+-++.+|.|+|++..++++.+. 
T Consensus        86 ~g~~~kdiaN~WELGgg~~~~~LLsV--Pit~~~l~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~-  162 (363)
T KOG3929|consen   86 KGHNPKDIANFWELGGGTSLLDLLSV--PITGDTLRTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNA-  162 (363)
T ss_pred             cCCCchhHHHHHHhcCCccHHHHhcC--cccccchhhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH-
Confidence            34568999999999999999999999  999999999999999999999999999999999999999997766665333 


Q ss_pred             cccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc
Q psy11649        465 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS  544 (890)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs  544 (890)
                         +..++++++- ++                                                                
T Consensus       163 ---~L~E~mrqR~-~~----------------------------------------------------------------  174 (363)
T KOG3929|consen  163 ---KLVEEMRQRI-WN----------------------------------------------------------------  174 (363)
T ss_pred             ---HHHHHHHHHH-HH----------------------------------------------------------------
Confidence               2223332221 00                                                                


Q ss_pred             eeEeccCChhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccCCCcccccccccccceecccccccccc
Q psy11649        545 LLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTEVGRKHLTTKYSSNSAL  624 (890)
Q Consensus       545 L~ftS~K~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (890)
                                                                        ..|                           
T Consensus       175 --------------------------------------------------rvg---------------------------  177 (363)
T KOG3929|consen  175 --------------------------------------------------RVG---------------------------  177 (363)
T ss_pred             --------------------------------------------------hcc---------------------------
Confidence                                                              011                           


Q ss_pred             ccCCCCCcceecccCCCcccccccccCCCCcccccchhhheeehhhcccCCccccccccccccccccccccccceeeccC
Q psy11649        625 GLMNDNPLWIVIPKLGLHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  704 (890)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (890)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (363)
T KOG3929|consen  178 --------------------------------------------------------------------------------  177 (363)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCcCcccccCccEEEEeeccccccCCChhhHHHHHHHHHHHHHHhCCeEEEeecCChhHHHHHHHHHHHhcccCC
Q psy11649        705 KYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH  784 (890)
Q Consensus       705 ~~~~~~d~~~~~~~pvPl~ivg~KyD~f~~~d~e~~k~i~r~LR~iah~yGAsL~f~S~k~~~l~~~~r~~~~h~~F~~~  784 (890)
                        -.|||.++++|+|||++|||+|||+|++||||+||++||||||+||+|||+|+|+|+|+++|.+++|++++|+|||++
T Consensus       178 --qd~~d~e~~dP~P~PV~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~  255 (363)
T KOG3929|consen  178 --QDHPDHELIDPFPVPVVIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGID  255 (363)
T ss_pred             --cCCCchhhcCCCCCceEEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCc
Confidence              128899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeccCCceeecCCCCccccccCCcc-ccccCCCCchHHHHHHHhhccCCCCCCCccCCCCCCCCCCCCCCChhhh
Q psy11649        785 LASAVNFDYNKPIFVPFGTDSVASIEGTTQ-YVTAGSTSSLDKYKHIFTTHFLQDDPSQNKSKSAPDPALDQNYSEPVID  863 (890)
Q Consensus       785 ~~~~~~~D~~kpl~Ip~G~Ds~~~Ig~~~~-~~~~~~~~~~~~w~~~~~~~fp~~~~~~~~~~~~~dp~~d~~f~E~~ID  863 (890)
                      ..+++++|+|+|+||.+|.|||++||.|+. ...+|+.+|.++|+++|...|||.+....+....+||+.||+|+|+.||
T Consensus       256 ~~~s~~vD~NkPlfi~~G~DS~~~IG~pp~~~nd~Ga~sp~elw~~~F~~l~PQk~~~~~kd~kttDPa~DP~FKE~~ID  335 (363)
T KOG3929|consen  256 KSKSICVDQNKPLFITAGLDSFGQIGSPPVPENDIGAHSPMELWKKVFEKLFPQKSINTLKDIKTTDPARDPQFKENEID  335 (363)
T ss_pred             CCcceeecCCCceEEEeccccHhhcCCCCCCcccccccChHHHHHHHHHHhcChhhhhHHhhhcccCcccCccccccchH
Confidence            999999999999999999999999997644 3567888999999999999999987555555667999999999999999


Q ss_pred             hhHHhhHHHHHHhhhccccccccccC
Q psy11649        864 SLRNQKLEQLDQMRREVDMKDKYRTR  889 (890)
Q Consensus       864 ~~r~qK~~Ele~~~~~~~~r~~~~~~  889 (890)
                      +||.||++||++|+|+...|+||+.+
T Consensus       336 e~r~qK~~EL~~~~Rs~~~R~k~E~~  361 (363)
T KOG3929|consen  336 EMRIQKDLELEQYKRSSSKRWKQEEL  361 (363)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhHhh
Confidence            99999999999999999999999754

>KOG3905|consensus

Probab=100.00  E-value=7.1e-60  Score=498.35  Aligned_cols=250  Identities=12%  Similarity=0.173  Sum_probs=205.1

Q ss_pred             cCCCCCChhhhhhhhhhccccccccccccccCCCCceeeccccccccccccCcccccCceeEEEEeCCCccccccccccc
Q psy11649        333 HSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFS  412 (890)
Q Consensus       333 ~~~~~~~~~~~~d~~l~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~~vW~L~G~~~~~~Ll~~~~  412 (890)
                      +.+-..+|-.||+.+= |+-=||-+--.+.-=||+-      -|.++            .||||+|||+++|++||+|  
T Consensus        61 n~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~------RDd~t------------r~~VWiLDGd~~h~~LLk~--  119 (473)
T KOG3905|consen   61 NGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDED------RDDLT------------RCNVWILDGDLYHKGLLKF--  119 (473)
T ss_pred             CCCchhHHHHHhhccc-ccCCCCCcceEEEeccccc------chhhh------------hcceEEecCchhhhhHHhh--
Confidence            5556677788888776 6666664433222212221      13333            4669999999999999999  


Q ss_pred             ccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhc--------ccccccccccccc-----ccccc
Q psy11649        413 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKR--------GSFEHFRTADEHR-----DKGLI  479 (890)
Q Consensus       413 al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~--------~~~~~~~~~~~~~-----~~~~~  479 (890)
                      ||++.++.+++||+++|||+||++++||++|++++++|||++....+++        +.||+|-.+.+..     .+.+.
T Consensus       120 al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~  199 (473)
T KOG3905|consen  120 ALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTV  199 (473)
T ss_pred             cccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccc
Confidence            9999999999999999999999999999999999999999966544444        3477775554443     33344


Q ss_pred             ccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc------cCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649        480 RTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF------ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP  553 (890)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~------~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~  553 (890)
                      .....++.+++|    +.+++||+|||||++|||||||++      .+|.+||+||||+|||+|||+|||+|||||+||+
T Consensus       200 ~~~~~de~~llP----L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~  275 (473)
T KOG3905|consen  200 VGSSADEHVLLP----LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKET  275 (473)
T ss_pred             ccCccccccccc----cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccc
Confidence            444567778888    789999999999999999999997      4677899999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccCCCcccccccc
Q psy11649        554 GLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTQYVTADTE  608 (890)
Q Consensus       554 ~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~~~~~~~~~~~  608 (890)
                      +|||+|||||+||+|||+|++||+|+|+|+|||||||||.|||++ -+|..++++
T Consensus       276 KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI~I-l~En~~~vk  329 (473)
T KOG3905|consen  276 KNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDI-LHENFPTVK  329 (473)
T ss_pred             cchHHHHHHHHHHhcCcccCCcceEeecceeEeccCCCccccchh-hhhcCCCCC
Confidence            999999999999999999999999999999999999999999999 555555443

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=100.00  E-value=2.6e-49  Score=452.88  Aligned_cols=204  Identities=18%  Similarity=0.255  Sum_probs=172.5

Q ss_pred             cCceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhc-------
Q psy11649        389 TADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKR-------  461 (890)
Q Consensus       389 ~kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~-------  461 (890)
                      +.++||||+|||+++|.+||+|  ||+.+++++++||||||||+||++|++|++|++++++|++++....+++       
T Consensus        71 d~~rl~vw~L~g~~~~~~LLk~--~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl  148 (472)
T PF05783_consen   71 DLARLNVWELDGDPSHSDLLKF--ALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKL  148 (472)
T ss_pred             cCceeeEEEcCCCcchHhHhcc--cCCcccccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            4567899999999999999999  8999999999999999999999999999999999999999965433322       


Q ss_pred             -ccccccccccccc-----ccccccc-CCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC------CChhHHH
Q psy11649        462 -GSFEHFRTADEHR-----DKGLIRT-FPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN------LEPNKKR  528 (890)
Q Consensus       462 -~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~------~~~E~~d  528 (890)
                       ..+|+|..+.+..     .++.... ...++.+.+|    +++++|++||||||||||||+|.+..      +.+||+|
T Consensus       149 ~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lp----l~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~D  224 (472)
T PF05783_consen  149 ERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLP----LGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFD  224 (472)
T ss_pred             HHHHHHhhhccccccccCcccccccccccccccccCC----CCCcccccccCcceEEEEecccHHHHHhhhcccchhhHH
Confidence             2355553332221     1110111 1122334445    78999999999999999999999854      5577899


Q ss_pred             HHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccC
Q psy11649        529 IAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEG  598 (890)
Q Consensus       529 ~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~  598 (890)
                      ||||+||+|||+|||||||||+|+++||++||+||+||+||++|+.+++++++|+||||||||||+||++
T Consensus       225 fIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~f~~~~~vv~~d~ifIP~GwDs~~kI~i  294 (472)
T PF05783_consen  225 FIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFPFKTPAQVVERDAIFIPAGWDSWGKIRI  294 (472)
T ss_pred             HHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCCCCCCceeecccccccCCCCCCHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.97  E-value=1.2e-30  Score=299.32  Aligned_cols=252  Identities=23%  Similarity=0.321  Sum_probs=206.5

Q ss_pred             cchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccc
Q psy11649          3 PKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMK   82 (890)
Q Consensus         3 ~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k   82 (890)
                      .++||+.|++++..+.+.+          ...++.|+|+|+.++|||||+.+|.+. +.++++.|++|.|.++.....+.
T Consensus         3 ~~~lW~siL~ev~~~~~~~----------~~~~k~vlvlG~~~~GKttli~~L~~~-e~~~~~~aLeYty~~v~d~~~dd   71 (472)
T PF05783_consen    3 KENLWSSILSEVSNSSSTK----------LPSEKSVLVLGDKGSGKTTLIARLQGI-EDPKKGLALEYTYLDVKDEDRDD   71 (472)
T ss_pred             cccHHHHHHHHHHhhcccc----------CCCCceEEEEeCCCCchHHHHHHhhcc-CCCCCCcccceEEEeeccCcCCc
Confidence            4689999999997643222          234689999999999999999998764 45789999999999887543333


Q ss_pred             -eEEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         83 -DICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        83 -~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                       .+++||.++|...+..|+... +.+++.   ..+||||+|+++||.+++.|..|++.++++++++....+.+..+++++
T Consensus        72 ~~rl~vw~L~g~~~~~~LLk~~lt~~~l~---~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl  148 (472)
T PF05783_consen   72 LARLNVWELDGDPSHSDLLKFALTPENLP---NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKL  148 (472)
T ss_pred             CceeeEEEcCCCcchHhHhcccCCccccc---ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence             389999999998999999888 777888   899999999999999999999999999999988643222222222211


Q ss_pred             -------------c---------------ccc-----ccccccccCCCCcEEEEeecccCCCC------CCcchhhhhHH
Q psy11649        161 -------------T---------------ADE-----HRDKGLIRTFPVPLILIGGKYDLFEN------LEPNKKRIAVQ  201 (890)
Q Consensus       161 -------------~---------------~~~-----~~d~~li~~l~IPiIVVgNK~Dl~~d------~d~e~r~~i~~  201 (890)
                                   .               .++     .++..+..++|+|++|||+|+|.+..      +.+++.+++++
T Consensus       149 ~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq  228 (472)
T PF05783_consen  149 ERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQ  228 (472)
T ss_pred             HHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHH
Confidence                         0               001     02345567899999999999997642      34567789999


Q ss_pred             HHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccC
Q psy11649        202 CLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT  268 (890)
Q Consensus       202 ~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~p  268 (890)
                      .+|.+|.+||+++||||++++.|++.|+.||.|++|+.++.....+...+.+|||+|||++++|+..
T Consensus       229 ~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~f~~~~~vv~~d~ifIP~GwDs~~kI~il  295 (472)
T PF05783_consen  229 YLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFPFKTPAQVVERDAIFIPAGWDSWGKIRIL  295 (472)
T ss_pred             HHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCCCCCCceeecccccccCCCCCCHHhcCcc
Confidence            9999999999999999999999999999999999999999888999999999999999999999865

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG3905|consensus

Probab=99.97  E-value=1.8e-30  Score=275.60  Aligned_cols=251  Identities=17%  Similarity=0.262  Sum_probs=205.2

Q ss_pred             chHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccce
Q psy11649          4 KSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKD   83 (890)
Q Consensus         4 ~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~   83 (890)
                      ++||+.|+.++..+.+..          -+...+|+|+|+.++|||||+.+|.+-+ .++++-|++|.|..+.....+..
T Consensus        31 qnlWs~iLsev~T~~~sk----------lpsgk~VlvlGdn~sGKtsLi~klqg~e-~~KkgsgLeY~yl~V~de~RDd~   99 (473)
T KOG3905|consen   31 QNLWSEILSEVSTRTRSK----------LPSGKNVLVLGDNGSGKTSLISKLQGSE-TVKKGSGLEYLYLHVHDEDRDDL   99 (473)
T ss_pred             HHHHHHHHHHhhhccccc----------CCCCCeEEEEccCCCchhHHHHHhhccc-ccCCCCCcceEEEecccccchhh
Confidence            579999999997765533          2335689999999999999999988754 78899999999987775443333


Q ss_pred             -EEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc---
Q psy11649         84 -ICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH---  158 (890)
Q Consensus        84 -~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~---  158 (890)
                       ++++|-+.|......++... ...++.   -..||++.|+++||.++++|..|...++++++++....+....+++   
T Consensus       100 tr~~VWiLDGd~~h~~LLk~al~ats~a---etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~  176 (473)
T KOG3905|consen  100 TRCNVWILDGDLYHKGLLKFALPATSLA---ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLE  176 (473)
T ss_pred             hhcceEEecCchhhhhHHhhcccccCcc---ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence             99999999988878888776 444466   7799999999999999999999999999999876542211111111   


Q ss_pred             -----cc-------------------ccccc-----cccccccCCCCcEEEEeecccCCC------CCCcchhhhhHHHH
Q psy11649        159 -----FR-------------------TADEH-----RDKGLIRTFPVPLILIGGKYDLFE------NLEPNKKRIAVQCL  203 (890)
Q Consensus       159 -----~~-------------------~~~~~-----~d~~li~~l~IPiIVVgNK~Dl~~------d~d~e~r~~i~~~l  203 (890)
                           .+                   +.++|     -+..++.++|+|++||++|||.+.      ++.+++.++|+..+
T Consensus       177 k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~l  256 (473)
T KOG3905|consen  177 KDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHL  256 (473)
T ss_pred             HHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHH
Confidence                 11                   12222     123567899999999999999832      45667889999999


Q ss_pred             HHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccC
Q psy11649        204 RYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGT  268 (890)
Q Consensus       204 r~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~p  268 (890)
                      |+||.+||+.++|||+|+..||+.|..||.|+.|+.++...+.+.+.+++|||+|||+..+|+..
T Consensus       257 RkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~~fttpAlVVEkdaVfIPAGWD~eKKI~Il  321 (473)
T KOG3905|consen  257 RKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGFPFTTPALVVEKDAVFIPAGWDNEKKIDIL  321 (473)
T ss_pred             HHHHHHcCceeEEeecccccchHHHHHHHHHHhcCcccCCcceEeecceeEeccCCCccccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999864

>KOG3929|consensus

Probab=99.96  E-value=6.7e-30  Score=264.45  Aligned_cols=270  Identities=31%  Similarity=0.518  Sum_probs=229.7

Q ss_pred             chHHHHHHHHhccCCCCCCCCccc-cccCCccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEecccc
Q psy11649          4 KSLKDIAIELAHGKHPSPSSSEVH-KIDIQSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVM   81 (890)
Q Consensus         4 ~~lw~~il~~v~~~~~~r~~~~~~-~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~   81 (890)
                      +++|..+-...+.+.-....++|+ .....+.+..|++.|+.++  |++|+++..+++ ...|+.+++|+|.++.+.+..
T Consensus        13 e~~~~~a~a~~~~~DinG~~~deqL~e~~~~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~   90 (363)
T KOG3929|consen   13 ETLWEIAKAEVEKRDINGSEGDEQLAEIAEKFEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNP   90 (363)
T ss_pred             HHHHHHhhccccccccccchhhHHHHHhhccceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCc
Confidence            444554444333333233333222 3667788999999998876  999999998754 667899999999999976656


Q ss_pred             ceEEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh-----hhccc
Q psy11649         82 KDICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR-----EKRGS  155 (890)
Q Consensus        82 k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~-----~~~~~  155 (890)
                      ++..++|+++|.....+++++. +.++++   .-.+|+|+|+|+|..+|..++..++.++.+.++.....     ..++.
T Consensus        91 kdiaN~WELGgg~~~~~LLsVPit~~~l~---~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~  167 (363)
T KOG3929|consen   91 KDIANFWELGGGTSLLDLLSVPITGDTLR---TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEE  167 (363)
T ss_pred             hhHHHHHHhcCCccHHHHhcCcccccchh---hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            6789999999999999999999 777778   88999999999999999999999999998887655432     33334


Q ss_pred             ccccc---ccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHH
Q psy11649        156 FEHFR---TADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL  232 (890)
Q Consensus       156 l~~~~---~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I  232 (890)
                      |+++.   .+++++|..+++++++|++|||.|+|.+++++++.|+.+++.+|.+|+.||+.+++.|+|.....+.+++.|
T Consensus       168 mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKYDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i  247 (363)
T KOG3929|consen  168 MRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKYDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVI  247 (363)
T ss_pred             HHHHHHHhcccCCCchhhcCCCCCceEEeccchhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhH
Confidence            66666   689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCcccccccCCCCcccccCCCccccccccCCCCCCCCccccccc
Q psy11649        233 NHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRG  282 (890)
Q Consensus       233 ~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~  282 (890)
                      +|+.|+....+..++|+++|++|.+|.|||++||.|    +++.+++++.
T Consensus       248 ~HlaFG~~~~~s~~vD~NkPlfi~~G~DS~~~IG~p----p~~~nd~Ga~  293 (363)
T KOG3929|consen  248 NHLAFGIDKSKSICVDQNKPLFITAGLDSFGQIGSP----PVPENDIGAH  293 (363)
T ss_pred             HHhhcCCcCCcceeecCCCceEEEeccccHhhcCCC----CCCccccccc
Confidence            999999999999999999999999999999999999    9999998863

>KOG0084|consensus

Probab=99.95  E-value=1.6e-27  Score=239.90  Aligned_cols=163  Identities=18%  Similarity=0.298  Sum_probs=144.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccc-eEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMK-DICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k-~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ...+||+|+|++|||||+|+.||.+.  .+.+..|+|+||...+..  ...+ .+++||||+||++|+.+...|    |+
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e--~~gk~iKlQIWDTAGQERFrtit~sy----YR   80 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVE--LDGKTIKLQIWDTAGQERFRTITSSY----YR   80 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEee--ecceEEEEEeeeccccHHHhhhhHhh----cc
Confidence            45799999999999999999999996  468899999997644333  2233 399999999999999999999    55


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++++||+|||+|+.+|| +++..|+++++++...                             ++|.++||||+|+. 
T Consensus        81 --~ahGii~vyDiT~~~SF-~~v~~Wi~Ei~~~~~~-----------------------------~v~~lLVGNK~Dl~-  127 (205)
T KOG0084|consen   81 --GAHGIIFVYDITKQESF-NNVKRWIQEIDRYASE-----------------------------NVPKLLVGNKCDLT-  127 (205)
T ss_pred             --CCCeEEEEEEcccHHHh-hhHHHHHHHhhhhccC-----------------------------CCCeEEEeeccccH-
Confidence              69999999999999999 9999999999887654                             68999999999995 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          +++.+..++++.|+..++.+ +++||||++.|++..+..|.+.+..
T Consensus       128 ----~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  128 ----EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQ  173 (205)
T ss_pred             ----hheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence                58999999999999999999 9999999999999999999888754

>KOG0078|consensus

Probab=99.94  E-value=8.4e-26  Score=230.41  Aligned_cols=165  Identities=19%  Similarity=0.262  Sum_probs=144.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+++|+++||||+|+.+|..+  ...+..|+|+||...+..... ...++++|||+||++|..+...|    |+
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g-~~i~lQiWDtaGQerf~ti~~sY----yr   83 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDG-KKIKLQIWDTAGQERFRTITTAY----YR   83 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCC-eEEEEEEEEcccchhHHHHHHHH----Hh
Confidence            456799999999999999999999986  457789999998765555433 24499999999999999999999    44


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +|+++++|||+++.+|| +++..|+..|.++...                             ++|++|||||+|+. 
T Consensus        84 --gA~gi~LvyDitne~Sf-eni~~W~~~I~e~a~~-----------------------------~v~~~LvGNK~D~~-  130 (207)
T KOG0078|consen   84 --GAMGILLVYDITNEKSF-ENIRNWIKNIDEHASD-----------------------------DVVKILVGNKCDLE-  130 (207)
T ss_pred             --hcCeeEEEEEccchHHH-HHHHHHHHHHHhhCCC-----------------------------CCcEEEeecccccc-
Confidence              69999999999999999 9999999999886543                             79999999999995 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          ++|++..+..+++|..+|+.|+|||||+|.||++.+-.+...+..
T Consensus       131 ----~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  131 ----EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             ----ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence                489999999999999999999999999999999998887777653

>KOG0094|consensus

Probab=99.93  E-value=2.8e-25  Score=222.92  Aligned_cols=168  Identities=18%  Similarity=0.261  Sum_probs=144.0

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ..+.+||+|+|+.+|||||||+||+.+  +.+|.+|+|+||-..+..... ...++++|||+||++|+.+++.|    ++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d-~~vrLQlWDTAGQERFrslipsY----~R   93 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSY----IR   93 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcC-cEEEEEEEecccHHHHhhhhhhh----cc
Confidence            445599999999999999999999986  568999999997654443221 23489999999999999999999    33


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++.++|+|||+++..|| ++..+|++.++.....                            .++-+++||||.||. 
T Consensus        94 --ds~vaviVyDit~~~Sf-e~t~kWi~dv~~e~gs----------------------------~~viI~LVGnKtDL~-  141 (221)
T KOG0094|consen   94 --DSSVAVIVYDITDRNSF-ENTSKWIEDVRRERGS----------------------------DDVIIFLVGNKTDLS-  141 (221)
T ss_pred             --CCeEEEEEEeccccchH-HHHHHHHHHHHhccCC----------------------------CceEEEEEccccccc-
Confidence              59999999999999999 9999999988764322                            247899999999996 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH  240 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~  240 (890)
                          ++|++...+....|+.+|+.|++|||+.|.||++++.-|...+++..
T Consensus       142 ----dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~  188 (221)
T KOG0094|consen  142 ----DKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGME  188 (221)
T ss_pred             ----chhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence                48999999999999999999999999999999999999998886643

>KOG0092|consensus

Probab=99.93  E-value=1.5e-25  Score=225.01  Aligned_cols=164  Identities=18%  Similarity=0.307  Sum_probs=141.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEecccc-ceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVM-KDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ..++||+|+|+.|||||||+-||..+.+  ...||+|..|.  ++.....+ ..++.||||+|+++|.++.+.|    |+
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~--tktv~~~~~~ikfeIWDTAGQERy~slapMY----yR   76 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFL--TKTVTVDDNTIKFEIWDTAGQERYHSLAPMY----YR   76 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEE--EEEEEeCCcEEEEEEEEcCCcccccccccce----ec
Confidence            4578999999999999999999998754  44899998864  34322222 3489999999999999999999    55


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++|+|||+++.+|| ..+..|++++++...                             .++-+.|||||+|+. 
T Consensus        77 --gA~AAivvYDit~~~SF-~~aK~WvkeL~~~~~-----------------------------~~~vialvGNK~DL~-  123 (200)
T KOG0092|consen   77 --GANAAIVVYDITDEESF-EKAKNWVKELQRQAS-----------------------------PNIVIALVGNKADLL-  123 (200)
T ss_pred             --CCcEEEEEEecccHHHH-HHHHHHHHHHHhhCC-----------------------------CCeEEEEecchhhhh-
Confidence              69999999999999999 999999999887543                             257889999999996 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                          +.|++..+++..+|...|+.+++||||++.|+++++..|...++..
T Consensus       124 ----~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~  169 (200)
T KOG0092|consen  124 ----ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCS  169 (200)
T ss_pred             ----hcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence                3799999999999999999999999999999999999999998543

>KOG0098|consensus

Probab=99.92  E-value=6.9e-25  Score=218.53  Aligned_cols=163  Identities=19%  Similarity=0.231  Sum_probs=142.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+|++++|+.|||||+|+.||+++.+  .+..|+|+||-+..... ...+.+++||||+|+++|.++...|    |+  
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~i-d~k~IKlqiwDtaGqe~frsv~~sy----Yr--   77 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTI-DGKQIKLQIWDTAGQESFRSVTRSY----YR--   77 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEE-cCceEEEEEEecCCcHHHHHHHHHH----hc--
Confidence            468999999999999999999999754  55689999987644443 2234499999999999999999999    55  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++.++|+|||+++.++| +.|..|+.+++++...                             ++.++|+|||+||.   
T Consensus        78 ~a~GalLVydit~r~sF-~hL~~wL~D~rq~~~~-----------------------------NmvImLiGNKsDL~---  124 (216)
T KOG0098|consen   78 GAAGALLVYDITRRESF-NHLTSWLEDARQHSNE-----------------------------NMVIMLIGNKSDLE---  124 (216)
T ss_pred             cCcceEEEEEccchhhH-HHHHHHHHHHHHhcCC-----------------------------CcEEEEEcchhhhh---
Confidence            69999999999999999 9999999999887533                             57899999999995   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                        ..|.+..++.+.||+++|..+++|||++++|+++++.-+.+.++.
T Consensus       125 --~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~  169 (216)
T KOG0098|consen  125 --ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYR  169 (216)
T ss_pred             --ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence              478999999999999999999999999999999998888888765

>KOG1673|consensus

Probab=99.92  E-value=2.4e-25  Score=215.44  Aligned_cols=134  Identities=25%  Similarity=0.447  Sum_probs=121.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+|||+   +++.++   ||..+....+++||+|||+|.+| +|+..||+++|+.++.                   
T Consensus        71 fSIwdlgG~---~~~~n~---lPiac~dsvaIlFmFDLt~r~TL-nSi~~WY~QAr~~Nkt-------------------  124 (205)
T KOG1673|consen   71 FSIWDLGGQ---REFINM---LPIACKDSVAILFMFDLTRRSTL-NSIKEWYRQARGLNKT-------------------  124 (205)
T ss_pred             EEEEecCCc---Hhhhcc---CceeecCcEEEEEEEecCchHHH-HHHHHHHHHHhccCCc-------------------
Confidence            489999999   455666   44456666699999999999999 9999999999997775                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       .|| |+||||||.|-+|++|.+..|..+.|+||..|.|+|||||+..
T Consensus       125 ---------------------------------AiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~  170 (205)
T KOG1673|consen  125 ---------------------------------AIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH  170 (205)
T ss_pred             ---------------------------------cce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence                                             255 7899999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCCCCcceecccCCceEe
Q psy11649        553 PGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFV  586 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifI  586 (890)
                      ++|+++++|+++.++|++|++.|....-+|||..
T Consensus       171 sINv~KIFK~vlAklFnL~~ti~~~~~iGdPild  204 (205)
T KOG1673|consen  171 SINVQKIFKIVLAKLFNLPWTIPEILTIGDPILD  204 (205)
T ss_pred             cccHHHHHHHHHHHHhCCceecccccccCccccc
Confidence            9999999999999999999999999999999863

>KOG0394|consensus

Probab=99.92  E-value=9.4e-25  Score=217.27  Aligned_cols=172  Identities=15%  Similarity=0.274  Sum_probs=144.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccce-EEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKD-ICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~-~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      +..-.||+++|++|||||||+|++.+++  ..|+.|+|.+|.  ++....+++. .++||||+|+++|.+|-..+    |
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFl--tKev~Vd~~~vtlQiWDTAGQERFqsLg~aF----Y   79 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFL--TKEVQVDDRSVTLQIWDTAGQERFQSLGVAF----Y   79 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhhe--eeEEEEcCeEEEEEEEecccHHHhhhcccce----e
Confidence            4457899999999999999999999974  588999999965  4443333333 89999999999999998777    5


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++++|||+++++|| ++|..|.+++-.+...                         -.+...|+||+|||+|+-
T Consensus        80 R--gaDcCvlvydv~~~~Sf-e~L~~Wr~EFl~qa~~-------------------------~~Pe~FPFVilGNKiD~~  131 (210)
T KOG0394|consen   80 R--GADCCVLVYDVNNPKSF-ENLENWRKEFLIQASP-------------------------QDPETFPFVILGNKIDVD  131 (210)
T ss_pred             c--CCceEEEEeecCChhhh-ccHHHHHHHHHHhcCC-------------------------CCCCcccEEEEcccccCC
Confidence            6  79999999999999999 9999999977665432                         234479999999999984


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFSSH  240 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~~~  240 (890)
                      .   ...|++....++.+|...| ++|||||||...|++..++.+.+.++...
T Consensus       132 ~---~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  132 G---GKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE  181 (210)
T ss_pred             C---CccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence            2   1248999999999999986 88999999999999999999999986543

>KOG0079|consensus

Probab=99.92  E-value=7.8e-25  Score=210.31  Aligned_cols=164  Identities=18%  Similarity=0.306  Sum_probs=141.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .-++.+++|++|||||||+.+|...  .++|..|+|+||...+.. .+....+++|||++|+++|+.+.+.|    |+  
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~-i~G~~VkLqIwDtAGqErFrtitsty----yr--   79 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVD-INGDRVKLQIWDTAGQERFRTITSTY----YR--   79 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEee-cCCcEEEEEEeecccHHHHHHHHHHH----cc--
Confidence            4578899999999999999999986  568889999997654433 23345599999999999999999999    44  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +.+++|+|||+||.+|| .+..+|+++++..+.                              .+|-++||||.|..   
T Consensus        80 gthgv~vVYDVTn~ESF-~Nv~rWLeei~~ncd------------------------------sv~~vLVGNK~d~~---  125 (198)
T KOG0079|consen   80 GTHGVIVVYDVTNGESF-NNVKRWLEEIRNNCD------------------------------SVPKVLVGNKNDDP---  125 (198)
T ss_pred             CCceEEEEEECcchhhh-HhHHHHHHHHHhcCc------------------------------cccceecccCCCCc---
Confidence            69999999999999999 999999998887554                              38999999999984   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH  240 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~  240 (890)
                        +.|.+...+++.+|...|+.+|+||||+++|++.++.-|........
T Consensus       126 --~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  126 --ERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQAK  172 (198)
T ss_pred             --cceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHHH
Confidence              58889999999999999999999999999999999998877765433

>KOG0087|consensus

Probab=99.91  E-value=1.9e-24  Score=219.71  Aligned_cols=167  Identities=21%  Similarity=0.326  Sum_probs=146.0

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccce-EEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKD-ICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~-~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      -...+||+++|+++||||-|+.||+.+++  +.++|+|++|.  ++....+++. +++||||+||++|+.+...|    |
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~--t~t~~vd~k~vkaqIWDTAGQERyrAitSaY----Y   84 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFA--TRTVNVDGKTVKAQIWDTAGQERYRAITSAY----Y   84 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEE--eeceeecCcEEEEeeecccchhhhccccchh----h
Confidence            45689999999999999999999998754  66899999965  4443333343 99999999999999999999    5


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++.++++|||+|+..+| +++.+|+.+++++.+.                             .+++++||||+||.
T Consensus        85 r--gAvGAllVYDITr~~Tf-env~rWL~ELRdhad~-----------------------------nivimLvGNK~DL~  132 (222)
T KOG0087|consen   85 R--GAVGALLVYDITRRQTF-ENVERWLKELRDHADS-----------------------------NIVIMLVGNKSDLN  132 (222)
T ss_pred             c--ccceeEEEEechhHHHH-HHHHHHHHHHHhcCCC-----------------------------CeEEEEeecchhhh
Confidence            5  79999999999999999 8999999999987644                             79999999999995


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHL  241 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~  241 (890)
                           ..|.+..++.+.+|.+.|..+++|||.++.|++..++.+...+|....
T Consensus       133 -----~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs  180 (222)
T KOG0087|consen  133 -----HLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYKIVS  180 (222)
T ss_pred             -----hccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHHHHH
Confidence                 378899999999999999999999999999999999988888876443

>cd04121 Rab40 Rab40 subfamily

Probab=99.91  E-value=2.7e-23  Score=213.73  Aligned_cols=162  Identities=16%  Similarity=0.207  Sum_probs=134.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+|+|+.|||||||+.+|.++.  ..+.++++.+|....... ......+++|||+|++++..+...+    ++  
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~l~~~~----~~--   77 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGRFCTIFRSY----SR--   77 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHH----hc--
Confidence            45899999999999999999999863  456678888864333222 2223489999999999999988887    23  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++++| +++..|++.+.++.                              .++|++|||||+|+.   
T Consensus        78 ~ad~illVfD~t~~~Sf-~~~~~w~~~i~~~~------------------------------~~~piilVGNK~DL~---  123 (189)
T cd04121          78 GAQGIILVYDITNRWSF-DGIDRWIKEIDEHA------------------------------PGVPKILVGNRLHLA---  123 (189)
T ss_pred             CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccch---
Confidence            59999999999999999 89999999886532                              158999999999994   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                        +++.+..++++.+|..+++.+++|||++|.|++++++.|...+..
T Consensus       124 --~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~  168 (189)
T cd04121         124 --FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM  168 (189)
T ss_pred             --hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence              356677888999999999999999999999999999999887753

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04128 Spg1 Spg1p

Probab=99.90  E-value=6.7e-23  Score=209.02  Aligned_cols=168  Identities=24%  Similarity=0.420  Sum_probs=131.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++.  .++.||+|.+|........ .....++|||++|++++..+...+    ++  ++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~~~~~~----~~--~a   73 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-GTEITFSIWDLGGQREFINMLPLV----CN--DA   73 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCchhHHHhhHHH----Cc--CC
Confidence            489999999999999999999864  4688999988643222221 223489999999999998888777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|||++++.+| +++..|+..+++..                             ...+| ++||||+|+..+.+.
T Consensus        74 ~~iilv~D~t~~~s~-~~i~~~~~~~~~~~-----------------------------~~~~p-ilVgnK~Dl~~~~~~  122 (182)
T cd04128          74 VAILFMFDLTRKSTL-NSIKEWYRQARGFN-----------------------------KTAIP-ILVGTKYDLFADLPP  122 (182)
T ss_pred             CEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCE-EEEEEchhccccccc
Confidence            999999999999998 88899998776531                             12467 678999999644332


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCc
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHL  241 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~  241 (890)
                      +.+..+....+++|..+++++++|||++|.|++++++.+...+++.+.
T Consensus       123 ~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~  170 (182)
T cd04128         123 EEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLPL  170 (182)
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence            333344567888999999999999999999999999999988876443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04120 Rab12 Rab12 subfamily

Probab=99.90  E-value=5.1e-23  Score=213.85  Aligned_cols=160  Identities=18%  Similarity=0.245  Sum_probs=130.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      .|+++|+.|||||||+++|+.+.  ..+.+|++.+|....... ......++||||+|++++..+...+    ++  +++
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l~~~y----~~--~ad   74 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSITSAY----YR--SAK   74 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHHHHHH----hc--CCC
Confidence            69999999999999999999864  466789998875433332 1223489999999999999999888    33  699


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|||++++.|| +++..|++.+.+..                             ..++|++|||||+|+.     .
T Consensus        75 ~iIlVfDvtd~~Sf-~~l~~w~~~i~~~~-----------------------------~~~~piilVgNK~DL~-----~  119 (202)
T cd04120          75 GIILVYDITKKETF-DDLPKWMKMIDKYA-----------------------------SEDAELLLVGNKLDCE-----T  119 (202)
T ss_pred             EEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCcEEEEEECcccc-----c
Confidence            99999999999999 88999988765431                             1258999999999985     2


Q ss_pred             hhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        195 KKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .+++...+..++|.++ ++.+++|||++|.|++++++.|...+..
T Consensus       120 ~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         120 DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            5666777888899885 7899999999999999999999887643

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04133 Rop_like Rop subfamily

Probab=99.90  E-value=6.2e-23  Score=208.66  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=128.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+.+|+.+.  .++.||++..|.  ..........+++||||+|++++..+...+    ++  ++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~--~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~----~~--~a   73 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS--ANVSVDGNTVNLGLWDTAGQEDYNRLRPLS----YR--GA   73 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE--EEEEECCEEEEEEEEECCCCccccccchhh----cC--CC
Confidence            589999999999999999999874  467899986653  222112223489999999999999888877    33  59


Q ss_pred             cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC-
Q psy11649        114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL-  191 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~-  191 (890)
                      +++|+|||+++++|| +++ ..|+..+++..                              ..+|++|||||+|+.+.. 
T Consensus        74 ~~~ilvyd~~~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilvgnK~Dl~~~~~  122 (176)
T cd04133          74 DVFVLAFSLISRASY-ENVLKKWVPELRHYA------------------------------PNVPIVLVGTKLDLRDDKQ  122 (176)
T ss_pred             cEEEEEEEcCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEeChhhccChh
Confidence            999999999999999 666 68998775431                              158999999999995310 


Q ss_pred             ----CcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 ----EPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 ----d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          +...+.+..+++.++|..+++ .+++|||++|.||+++++.+...+
T Consensus       123 ~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         123 YLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             hhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence                111245778889999999998 599999999999999999888765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.90  E-value=7.5e-23  Score=209.07  Aligned_cols=164  Identities=17%  Similarity=0.247  Sum_probs=130.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+++|++|||||||+++|+++.  ..+.||++.+|.  ...........++||||+|++++..+...+    ++  
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~--~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~----~~--   75 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYDNVRPLS----YP--   75 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE--EEEEECCEEEEEEEEECCCchhhHhhhhhh----cC--
Confidence            46899999999999999999999874  567889987653  222222223489999999999998888777    33  


Q ss_pred             cCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      +++++|+|||++++.|| +++ ..|.+.+++..                              ..+|++|||||+|+.++
T Consensus        76 ~ad~~ilvyDit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilVgNK~DL~~~  124 (182)
T cd04172          76 DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC------------------------------PNTKMLLVGCKSDLRTD  124 (182)
T ss_pred             CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEeEChhhhcC
Confidence            69999999999999999 665 79998886632                              14899999999998532


Q ss_pred             CC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHH
Q psy11649        191 LE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYA  236 (890)
Q Consensus       191 ~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~l  236 (890)
                      ..       ..++.+..++++++|+++|+ +|+||||+++.| ++++++.+...+
T Consensus       125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence            11       01245778899999999996 899999999998 999988776643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0093|consensus

Probab=99.90  E-value=2.1e-23  Score=200.39  Aligned_cols=163  Identities=18%  Similarity=0.300  Sum_probs=138.5

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+|++++|+..||||||+.++++..  ..+..|+|++|..++.. ......+++||||+|+++++.+...+    |+ 
T Consensus        19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvy-r~~kRiklQiwDTagqEryrtiTTay----yR-   92 (193)
T KOG0093|consen   19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVY-RSDKRIKLQIWDTAGQERYRTITTAY----YR-   92 (193)
T ss_pred             cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEee-ecccEEEEEEEecccchhhhHHHHHH----hh-
Confidence            345799999999999999999999964  46678999996543332 22233489999999999999999888    44 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++|.+|| ++++.|.-.|+.+..                             .++|+|+||||||+.  
T Consensus        93 -gamgfiLmyDitNeeSf-~svqdw~tqIktysw-----------------------------~naqvilvgnKCDmd--  139 (193)
T KOG0093|consen   93 -GAMGFILMYDITNEESF-NSVQDWITQIKTYSW-----------------------------DNAQVILVGNKCDMD--  139 (193)
T ss_pred             -ccceEEEEEecCCHHHH-HHHHHHHHHheeeec-----------------------------cCceEEEEecccCCc--
Confidence             69999999999999999 999999987765432                             379999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                         ++|.+..+..+.++.++|..+|++|||.+.|++.+++.+...+-
T Consensus       140 ---~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic  183 (193)
T KOG0093|consen  140 ---SERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIIC  183 (193)
T ss_pred             ---cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHH
Confidence               58999999999999999999999999999999999988877764

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.90  E-value=2.1e-22  Score=207.66  Aligned_cols=166  Identities=14%  Similarity=0.243  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++.  ..+.||++.+|..............+++|||+|++++..+...+    ++  ++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~----~~--~a   74 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVY----YR--GA   74 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHH----hC--CC
Confidence            589999999999999999999863  46789999886533322221223489999999999998888777    23  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|||++++.+| +.+..|+..+......                         .....+|++|||||+|+..    
T Consensus        75 ~~~ilv~D~t~~~s~-~~~~~~~~~i~~~~~~-------------------------~~~~~~piilv~NK~Dl~~----  124 (201)
T cd04107          75 VGAIIVFDVTRPSTF-EAVLKWKADLDSKVTL-------------------------PNGEPIPCLLLANKCDLKK----  124 (201)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc-------------------------cCCCCCcEEEEEECCCccc----
Confidence            999999999999998 8889998877654321                         1123689999999999952    


Q ss_pred             chhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        194 NKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       .+....+++.+++..++ +.+++|||++|.|++++++.|...+..
T Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         125 -RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             -ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             35566778899999999 689999999999999999999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.90  E-value=1.9e-22  Score=210.54  Aligned_cols=166  Identities=18%  Similarity=0.297  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++  ...+.||+++++..............++|||++|+..+..+...+    ++  ++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~----~~--~a   74 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKY----IY--GA   74 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHH----hh--cC
Confidence            48999999999999999999986  357789999887443333222223589999999999888888887    23  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|||++++++| +++..|+..+.+....                          ...++|+++||||+|+.     
T Consensus        75 d~iilV~D~t~~~s~-~~~~~w~~~l~~~~~~--------------------------~~~~~piilVgNK~DL~-----  122 (215)
T cd04109          75 HAVFLVYDVTNSQSF-ENLEDWYSMVRKVLKS--------------------------SETQPLVVLVGNKTDLE-----  122 (215)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhccc--------------------------cCCCceEEEEEECcccc-----
Confidence            999999999999998 8899999988765422                          11257899999999995     


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                      +.+.+....++.++..+++.++++||++|.|++++++.|...+++.
T Consensus       123 ~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         123 HNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            2566677788999999999999999999999999999999887653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.7e-23  Score=241.92  Aligned_cols=261  Identities=17%  Similarity=0.101  Sum_probs=181.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCccceeEEEEEEeccccce-EEEEEEcCCCcch------hhHHhhh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK---NDTPKPTLALEYIYARKSGKTVMKD-ICHLWELGSGTSR------LEVASLF  103 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~---~~~~kptigvdY~f~~~~g~~~~k~-~l~IwDlpG~~~~------~~Li~~~  103 (890)
                      +..+|+++|+||||||||+|+|||.   .+|+ |++++|    ++.|....+. .++|.|+||.|++      +.+...|
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNw-pGvTVE----kkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~   76 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNW-PGVTVE----KKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDF   76 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCC-CCeeEE----EEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHH
Confidence            3567999999999999999999994   4677 999999    7776444433 7999999999987      4455555


Q ss_pred             -hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        104 -SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       104 -r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                       .+     .++|++|-|+|.+|.++   +|..-+|.                                 ..+++|++++.
T Consensus        77 ll~-----~~~D~ivnVvDAtnLeR---nLyltlQL---------------------------------lE~g~p~ilaL  115 (653)
T COG0370          77 LLE-----GKPDLIVNVVDATNLER---NLYLTLQL---------------------------------LELGIPMILAL  115 (653)
T ss_pred             Hhc-----CCCCEEEEEcccchHHH---HHHHHHHH---------------------------------HHcCCCeEEEe
Confidence             21     13899999999999987   77777762                                 23589999999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccc
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSV  262 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~  262 (890)
                      ||+|..      +++++..+..++.+.+|+++++|||++|.|++++++.+....-....          +..+..|.+-.
T Consensus       116 Nm~D~A------~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~~----------~~~~~y~~~ie  179 (653)
T COG0370         116 NMIDEA------KKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKTT----------PREVDYGEEIE  179 (653)
T ss_pred             ccHhhH------HhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccccc----------ccccccchHHH
Confidence            999985      78899999999999999999999999999999999888776522111          22223333332


Q ss_pred             cccccCCCCCCCCccccccccccccchhHHHhhccccc-----chhhccCChhhhHHHHHHHHh--HHHhhccceeccCC
Q psy11649        263 ASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWIEG-----TVTARNLEPNKKRIAVQCLRY--LAHVNGASLLFHSS  335 (890)
Q Consensus       263 ~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~w~~~-----~~~~~~~~~~~~~~~e~~~ry--~~~~~~~~~~~~~~  335 (890)
                      +.++.-.  -.+...++.+....+ +..+.+....-++     .......+... ...+...||  +.+++.+++.....
T Consensus       180 ~~i~~l~--~~~~~~r~lai~lL~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~~~ry~~~~~i~~~~v~~~~~  255 (653)
T COG0370         180 EEIKELE--ALSEDPRWLAIKLLE-DDELVEAVLKEPEKRVEELLEELSEEEGH-LLLIADARYALIERILRSVVKQEEE  255 (653)
T ss_pred             HHHHHHH--hhcchhHHHHHHHhc-ChHHHHHHhccchhhHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHhccccc
Confidence            2232210  012222555555554 4444332221111     10000000000 122445677  99999999986655


Q ss_pred             CCCChhhhhhhhhhccccccccccc
Q psy11649        336 LDPGLVKRTRDILNHYAFSSHLASA  360 (890)
Q Consensus       336 ~~~~~~~~~d~~l~h~~~~~~~~~~  360 (890)
                      ...++++++|++|+||++|--.|-.
T Consensus       256 ~~~slt~~iD~vllh~~lG~pifl~  280 (653)
T COG0370         256 EKSSLTDKIDRVLLHPVLGLPIFLL  280 (653)
T ss_pred             ccccHHHHhhHHHhchHHHHHHHHH
Confidence            5899999999999999999855443

>KOG0091|consensus

Probab=99.89  E-value=3.8e-23  Score=201.80  Aligned_cols=166  Identities=20%  Similarity=0.344  Sum_probs=140.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ..+++++||++-||||||+..|+.+.  +-..||+|+||. .+... ......++++|||+|+++|+++...|    |+ 
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdff-arlie~~pg~riklqlwdtagqerfrsitksy----yr-   80 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFF-ARLIELRPGYRIKLQLWDTAGQERFRSITKSY----YR-   80 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHH-HHHHhcCCCcEEEEEEeeccchHHHHHHHHHH----hh-
Confidence            46899999999999999999999874  455799999963 33332 22233499999999999999999999    33 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +.-++++|||+||.+|| +.++.|+.+...+.+                           .+..+.+.+||+|+|+.  
T Consensus        81 -nsvgvllvyditnr~sf-ehv~~w~~ea~m~~q---------------------------~P~k~VFlLVGhKsDL~--  129 (213)
T KOG0091|consen   81 -NSVGVLLVYDITNRESF-EHVENWVKEAAMATQ---------------------------GPDKVVFLLVGHKSDLQ--  129 (213)
T ss_pred             -cccceEEEEeccchhhH-HHHHHHHHHHHHhcC---------------------------CCCeeEEEEeccccchh--
Confidence             48899999999999999 999999987665443                           13367789999999995  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                         .+|++..+++++||..+|..|++||||+|.|+++.+.+|.+-+|..
T Consensus       130 ---SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~  175 (213)
T KOG0091|consen  130 ---SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQA  175 (213)
T ss_pred             ---hhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence               5899999999999999999999999999999999999999988753

>cd04131 Rnd Rnd subfamily

Probab=99.89  E-value=1.6e-22  Score=205.63  Aligned_cols=162  Identities=18%  Similarity=0.231  Sum_probs=127.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++.  ..+.||++.+|.  ...........++||||+|++++..+...+    ++  ++
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~----~~--~a   73 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT--ASFEIDEQRIELSLWDTSGSPYYDNVRPLC----YP--DS   73 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE--EEEEECCEEEEEEEEECCCchhhhhcchhh----cC--CC
Confidence            589999999999999999999864  477899987653  222112223489999999999988887777    33  59


Q ss_pred             cEEEEEEeCCCcCchHHH-HHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTE-AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~-L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +++|+|||++++.|| ++ +..|...+++..                              ..+|++|||||+|+.++..
T Consensus        74 ~~~ilvfdit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~~iilVgnK~DL~~~~~  122 (178)
T cd04131          74 DAVLICFDISRPETL-DSVLKKWRGEIQEFC------------------------------PNTKVLLVGCKTDLRTDLS  122 (178)
T ss_pred             CEEEEEEECCChhhH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEEEChhhhcChh
Confidence            999999999999999 66 478998876542                              1489999999999853110


Q ss_pred             -------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHH
Q psy11649        193 -------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYA  236 (890)
Q Consensus       193 -------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~l  236 (890)
                             ..++.+..++++++|.++|+ .+++|||++|.| +++++..+....
T Consensus       123 ~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~  175 (178)
T cd04131         123 TLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMAC  175 (178)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHH
Confidence                   01234777899999999997 799999999995 999988887643

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095|consensus

Probab=99.89  E-value=9.5e-23  Score=196.11  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=139.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      -+||++||+.|||||+|+.+|+.+-+  ....|+|++|...++... .++.+++||||+|+++|+++...|    |+  +
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~-gekiklqiwdtagqerfrsitqsy----yr--s   79 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-GEKIKLQIWDTAGQERFRSITQSY----YR--S   79 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-CeEEEEEEeeccchHHHHHHHHHH----hh--h
Confidence            58999999999999999999999743  345789999876555532 345699999999999999999999    33  4


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++...+| +.|..|+.+|.++..+                             .+-.|+||||.|+.    
T Consensus        80 ahalilvydiscqpsf-dclpewlreie~yan~-----------------------------kvlkilvgnk~d~~----  125 (213)
T KOG0095|consen   80 AHALILVYDISCQPSF-DCLPEWLREIEQYANN-----------------------------KVLKILVGNKIDLA----  125 (213)
T ss_pred             cceEEEEEecccCcch-hhhHHHHHHHHHHhhc-----------------------------ceEEEeeccccchh----
Confidence            9999999999999999 9999999999887654                             56789999999995    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       +.|.+.++..+.|+.....-+++|||++..|+++|+.-+.-.+..
T Consensus       126 -drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  126 -DRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLIS  170 (213)
T ss_pred             -hhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Confidence             478899999999999988889999999999999998887766643

>cd04127 Rab27A Rab27a subfamily

Probab=99.89  E-value=4.5e-22  Score=199.96  Aligned_cols=164  Identities=15%  Similarity=0.273  Sum_probs=131.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecc---------ccceEEEEEEcCCCcchhhHHhh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKT---------VMKDICHLWELGSGTSRLEVASL  102 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~---------~~k~~l~IwDlpG~~~~~~Li~~  102 (890)
                      ..+||+++|++|||||||+++|+++.  ..+.+|++++|.-.......         .....++|||++|++++..+...
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            35899999999999999999999863  46678888886433322111         12248999999999998888877


Q ss_pred             hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                      +    ++  +++++|+|||++++++| .++..|+..+.....                            ..+.|+++||
T Consensus        83 ~----~~--~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piiiv~  127 (180)
T cd04127          83 F----FR--DAMGFLLIFDLTNEQSF-LNVRNWMSQLQTHAY----------------------------CENPDIVLCG  127 (180)
T ss_pred             H----hC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEE
Confidence            7    22  59999999999999998 888999987765321                            1257999999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ||+|+..     .+.+..+++.+++..+++++++|||+++.|++++++.|...++
T Consensus       128 nK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         128 NKADLED-----QRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             eCccchh-----cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999852     4555667789999999999999999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01875 RhoG RhoG subfamily

Probab=99.89  E-value=3.1e-22  Score=205.23  Aligned_cols=166  Identities=17%  Similarity=0.197  Sum_probs=129.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+++|++|||||||+.+|+.+.  ..+.||++..|.  ...........++||||+|++++..+...+    ++  
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~----~~--   73 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS--AQTAVDGRTVSLNLWDTAGQEEYDRLRTLS----YP--   73 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE--EEEEECCEEEEEEEEECCCchhhhhhhhhh----cc--
Confidence            35899999999999999999999864  477899986653  222222223489999999999999988887    33  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      +++++|+|||++++.|| +++. .|...+....                              .++|++|||||+|+...
T Consensus        74 ~a~~~ilvydit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilvgNK~DL~~~  122 (191)
T cd01875          74 QTNVFIICFSIASPSSY-ENVRHKWHPEVCHHC------------------------------PNVPILLVGTKKDLRND  122 (191)
T ss_pred             CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEEeChhhhcC
Confidence            59999999999999998 7775 6887665421                              15899999999998532


Q ss_pred             CCc-------chhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEP-------NKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~-------e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      ...       ..+.+..++++.+|..++ +.+++|||++|.|++++++.+...+..
T Consensus       123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             hhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            100       012345678899999998 589999999999999999999887743

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04122 Rab14 Rab14 subfamily

Probab=99.89  E-value=5.4e-22  Score=197.30  Aligned_cols=161  Identities=19%  Similarity=0.232  Sum_probs=128.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++|+++.  ..+.+|++.++...... .......++|||++|++++..+...+    ++  +
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~   74 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIE-VNGQKIKLQIWDTAGQERFRAVTRSY----YR--G   74 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEE-ECCEEEEEEEEECCCcHHHHHHHHHH----hc--C
Confidence            3799999999999999999999864  35567788775422222 12223489999999999988887776    23  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++++| +.+..|++.+....                             ...+|+++||||+|+..   
T Consensus        75 ~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iiiv~nK~Dl~~---  121 (166)
T cd04122          75 AAGALMVYDITRRSTY-NHLSSWLTDARNLT-----------------------------NPNTVIFLIGNKADLEA---  121 (166)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCeEEEEEECccccc---
Confidence            9999999999999998 88999988665421                             12589999999999952   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        ++....++++++|..+++.+++|||++|.|+++++..+...++
T Consensus       122 --~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~  164 (166)
T cd04122         122 --QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY  164 (166)
T ss_pred             --ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence              4556677888999999999999999999999999888877664

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.89  E-value=4e-22  Score=211.33  Aligned_cols=167  Identities=19%  Similarity=0.220  Sum_probs=133.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      -..+||++||++|||||||+++|+++  ...+.||++.+|..  ..........++||||+|++.|..+...+    ++ 
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~--~i~~~~~~v~l~iwDTaG~e~~~~~~~~~----~~-   83 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA--GLETEEQRVELSLWDTSGSPYYDNVRPLC----YS-   83 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE--EEEECCEEEEEEEEeCCCchhhHHHHHHH----cC-
Confidence            44689999999999999999999986  45788999877642  22222223489999999999999888877    33 


Q ss_pred             ccCcEEEEEEeCCCcCchHHH-HHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTE-AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~-L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       +++++|+|||++++++| ++ +..|++.+.+..                              .++|++|||||+|+..
T Consensus        84 -~ad~vIlVyDit~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~piilVgNK~DL~~  131 (232)
T cd04174          84 -DSDAVLLCFDISRPETV-DSALKKWKAEIMDYC------------------------------PSTRILLIGCKTDLRT  131 (232)
T ss_pred             -CCcEEEEEEECCChHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc
Confidence             69999999999999999 55 589998876532                              1479999999999853


Q ss_pred             CCC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCC-CHHHHHHHHHHHHhc
Q psy11649        190 NLE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPG-LVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~-nId~Lk~~I~~~lf~  238 (890)
                      +..       ...+.+..++++++|+++|+ .|++|||++|. |+++++..+...+..
T Consensus       132 ~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         132 DLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             ccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence            211       11356778899999999999 69999999998 899999998877654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0080|consensus

Probab=99.88  E-value=2.3e-22  Score=195.81  Aligned_cols=168  Identities=15%  Similarity=0.207  Sum_probs=139.8

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||++||++|||||||+.+|+...  .....|+|+||..+.... ...+.++-||||+|+++|+.+.+.|    |+
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTpSy----yR   82 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTPSY----YR   82 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCHhH----hc
Confidence            3456999999999999999999999864  344466999976433322 2233499999999999999999999    55


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++.++|+|||+|..++| .+|..|++++.-+..+                            ..+-.++||||+|.. 
T Consensus        83 --gaqGiIlVYDVT~Rdtf-~kLd~W~~Eld~Ystn----------------------------~diikmlVgNKiDke-  130 (209)
T KOG0080|consen   83 --GAQGIILVYDVTSRDTF-VKLDIWLKELDLYSTN----------------------------PDIIKMLVGNKIDKE-  130 (209)
T ss_pred             --cCceeEEEEEccchhhH-HhHHHHHHHHHhhcCC----------------------------ccHhHhhhcccccch-
Confidence              69999999999999999 8899999988765432                            357789999999973 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH  240 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~  240 (890)
                          .+|.+..++..+||+++++-|+++|||+..|++..++.+...+...+
T Consensus       131 ----s~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  131 ----SERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             ----hcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence                37999999999999999999999999999999999888877775543

>cd01865 Rab3 Rab3 subfamily

Probab=99.88  E-value=1e-21  Score=195.37  Aligned_cols=160  Identities=18%  Similarity=0.298  Sum_probs=128.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++.  ..+.||++.+|...+... ......+++||++|+.++..+...+    ++  ++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~----~~--~~   74 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAY----YR--GA   74 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHH----cc--CC
Confidence            689999999999999999999875  466788887765433322 1223489999999999888877766    23  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|||+++++++ +.+..|+..+.+..                             ...+|+++||||+|+..    
T Consensus        75 ~~~l~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piivv~nK~Dl~~----  120 (165)
T cd01865          75 MGFILMYDITNEESF-NAVQDWSTQIKTYS-----------------------------WDNAQVILVGNKCDMED----  120 (165)
T ss_pred             cEEEEEEECCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCCEEEEEECcccCc----
Confidence            999999999999998 78889988765422                             12589999999999952    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       .+........+++..+++++++|||+++.|++++++.+...+.
T Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         121 -ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             -ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence             3444566778888899999999999999999999999887653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.88  E-value=9.5e-22  Score=198.24  Aligned_cols=161  Identities=18%  Similarity=0.269  Sum_probs=128.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++|.++.  ..+.||++..|.  ...........++|||++|++++..+...+    ++  +
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~----~~--~   73 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK--QQARIDNEPALLDILDTAGQAEFTAMRDQY----MR--C   73 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE--EEEEECCEEEEEEEEeCCCchhhHHHhHHH----hh--c
Confidence            4799999999999999999999864  356788875543  222112223479999999999998888877    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++.+| +++..|...+.+...                            ..++|+++||||+|+..   
T Consensus        74 ~d~~ilv~d~~~~~Sf-~~~~~~~~~i~~~~~----------------------------~~~~piilvgNK~Dl~~---  121 (172)
T cd04141          74 GEGFIICYSVTDRHSF-QEASEFKKLITRVRL----------------------------TEDIPLVLVGNKVDLES---  121 (172)
T ss_pred             CCEEEEEEECCchhHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEEChhhhh---
Confidence            9999999999999999 888888876654311                            12589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+.+...+.+.+|..+++++++|||++|.|++++++.+...+.
T Consensus       122 --~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~  164 (172)
T cd04141         122 --QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIR  164 (172)
T ss_pred             --cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHH
Confidence              4566677888999999999999999999999999999987764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.88  E-value=1.3e-21  Score=192.51  Aligned_cols=165  Identities=18%  Similarity=0.225  Sum_probs=130.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++.  ..+.++++.+|...+.... .....+++||++|++.+..+...+    ++  ++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~   73 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPEYLEVRNEF----YK--DT   73 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHHHHHHHHHH----hc--cC
Confidence            489999999999999999999964  4677899888754433322 223489999999998888777766    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|||++++.++ +.+..|+..+.+.....                        .....+|+++|+||+|+..    
T Consensus        74 d~~ilv~D~~~~~s~-~~~~~~~~~~~~~~~~~------------------------~~~~~~piilv~nK~Dl~~----  124 (168)
T cd04119          74 QGVLLVYDVTDRQSF-EALDSWLKEMKQEGGPH------------------------GNMENIVVVVCANKIDLTK----  124 (168)
T ss_pred             CEEEEEEECCCHHHH-HhHHHHHHHHHHhcccc------------------------ccCCCceEEEEEEchhccc----
Confidence            999999999999998 88899998887654220                        1123689999999999852    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       ++.....+.+.++...+++++++||+++.|++++++.|...++
T Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         125 -HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             -ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence             3445566777888889999999999999999999999987764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0086|consensus

Probab=99.88  E-value=3.4e-22  Score=193.03  Aligned_cols=161  Identities=20%  Similarity=0.250  Sum_probs=135.4

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccc-eEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMK-DICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k-~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ..-+|++++|+.|+|||+|+++|..+  ++....|+|++|.  .+......+ .+++||||+|+++|+++...|    |+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFg--SrIinVGgK~vKLQIWDTAGQErFRSVtRsY----YR   80 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFG--SRIVNVGGKTVKLQIWDTAGQERFRSVTRSY----YR   80 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeec--ceeeeecCcEEEEEEeecccHHHHHHHHHHH----hc
Confidence            34689999999999999999999985  4455689999965  444323333 399999999999999999999    55


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++.+.++|||+++.++| +.|..|+..++..                             .+..|-++++|||.|+- 
T Consensus        81 --GAAGAlLVYD~Tsrdsf-naLtnWL~DaR~l-----------------------------As~nIvviL~GnKkDL~-  127 (214)
T KOG0086|consen   81 --GAAGALLVYDITSRDSF-NALTNWLTDARTL-----------------------------ASPNIVVILCGNKKDLD-  127 (214)
T ss_pred             --cccceEEEEeccchhhH-HHHHHHHHHHHhh-----------------------------CCCcEEEEEeCChhhcC-
Confidence              79999999999999999 9999999987763                             33478999999999994 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          ++|++...++.+||.++...+.+|||++|+|+++.+--....+
T Consensus       128 ----~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tI  170 (214)
T KOG0086|consen  128 ----PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI  170 (214)
T ss_pred             ----hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHH
Confidence                5899999999999999999999999999999999754444443

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.88  E-value=1.4e-21  Score=194.76  Aligned_cols=161  Identities=21%  Similarity=0.254  Sum_probs=130.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++|++.  ...+.+|++.+|........ .....+++||++|++.+..+...+    ++  +
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~g~~~~~~~~~~~----~~--~   75 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-GKKIKLQIWDTAGQERFRTITTAY----YR--G   75 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-CEEEEEEEEeCCchHHHHHHHHHH----hC--C
Confidence            579999999999999999999986  45667888887643333211 122489999999999888877666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||++++.+| +.+..|+..+.+...                             .++|+++||||+|+.+   
T Consensus        76 ad~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~p~iiv~nK~Dl~~---  122 (167)
T cd01867          76 AMGIILVYDITDEKSF-ENIRNWMRNIEEHAS-----------------------------EDVERMLVGNKCDMEE---  122 (167)
T ss_pred             CCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC-----------------------------CCCcEEEEEECccccc---
Confidence            9999999999999998 888899987765321                             2689999999999962   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .++...++++.++..+++++++|||+++.|++++++.+...++
T Consensus       123 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  165 (167)
T cd01867         123 --KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIK  165 (167)
T ss_pred             --ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence              4455566788899999999999999999999999999987764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.88  E-value=1.5e-21  Score=193.60  Aligned_cols=161  Identities=19%  Similarity=0.266  Sum_probs=129.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++|+++.  ..+.+|++.++....... ......+++||+||++++..+...+    ++  +
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~----~~--~   74 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTITSSY----YR--G   74 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHHHHHH----hC--c
Confidence            4799999999999999999999864  356788887765433322 1223479999999999888887777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++++| +.+..|+..+.+...                             .++|+++|+||+|+..   
T Consensus        75 ~~~ii~v~d~~~~~s~-~~l~~~~~~~~~~~~-----------------------------~~~~~iiv~nK~Dl~~---  121 (166)
T cd01869          75 AHGIIIVYDVTDQESF-NNVKQWLQEIDRYAS-----------------------------ENVNKLLVGNKCDLTD---  121 (166)
T ss_pred             CCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC-----------------------------CCCcEEEEEEChhccc---
Confidence            9999999999999998 888889987765321                             2589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+....++++.+++.++++++++||++|.|++++++.|.+.++
T Consensus       122 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         122 --KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             --ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence              4455567788999999999999999999999999999988763

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.88  E-value=1.3e-21  Score=192.50  Aligned_cols=157  Identities=18%  Similarity=0.247  Sum_probs=125.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEec-cccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGK-TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +||+++|++|||||||+++|+++.  ..+.+|++.+|........ ......+++||+||++.+..+...+    ++  +
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~--~   74 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAY----YR--G   74 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHH----hc--C
Confidence            489999999999999999999863  3567888888643333222 1223489999999999988888777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||+++++++ +.+..|++.+.+..                              .++|+++|+||+|+..   
T Consensus        75 ~~~~v~v~d~~~~~s~-~~l~~~~~~~~~~~------------------------------~~~p~iiv~nK~Dl~~---  120 (162)
T cd04106          75 AQACILVFSTTDRESF-EAIESWKEKVEAEC------------------------------GDIPMVLVQTKIDLLD---  120 (162)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhccc---
Confidence            9999999999999998 88899988765422                              1589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                        ++.+..+++..++..++++++++||+++.|++++++.|..
T Consensus       121 --~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         121 --QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             --ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence              3344456788899999999999999999999999888764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04117 Rab15 Rab15 subfamily

Probab=99.88  E-value=1.6e-21  Score=193.93  Aligned_cols=158  Identities=20%  Similarity=0.266  Sum_probs=127.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++.  ..+.+|++.+|....... ......++|||++|+.++..+...+    ++  ++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~----~~--~~   73 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTITKQY----YR--RA   73 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhhHHHH----hc--CC
Confidence            479999999999999999999874  356788887754322221 1123479999999999988887777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++++|||++++++| +.+..|+..+.....                             ..+|+++||||+|+.     
T Consensus        74 ~~~i~v~d~~~~~sf-~~~~~~~~~~~~~~~-----------------------------~~~~iilvgnK~Dl~-----  118 (161)
T cd04117          74 QGIFLVYDISSERSY-QHIMKWVSDVDEYAP-----------------------------EGVQKILIGNKADEE-----  118 (161)
T ss_pred             cEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECcccc-----
Confidence            999999999999998 888899887765321                             258999999999985     


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +++.+..++...+++.+++++++|||++|.|++++++.|..+
T Consensus       119 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         119 QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            356666788999999999999999999999999998888654

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04111 Rab39 Rab39 subfamily

Probab=99.87  E-value=2.8e-21  Score=201.70  Aligned_cols=164  Identities=20%  Similarity=0.333  Sum_probs=131.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.+|++.+|..............+++||++|++++..+...+    ++  +
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~   75 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSY----YR--N   75 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHH----hc--C
Confidence            5799999999999999999999864  35678888876432222222223489999999999988888777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++++| +++..|++.+.+...                            ...+|++|||||+|+..   
T Consensus        76 ~d~iilv~D~~~~~Sf-~~l~~~~~~i~~~~~----------------------------~~~~~iilvgNK~Dl~~---  123 (211)
T cd04111          76 SVGVLLVFDITNRESF-EHVHDWLEEARSHIQ----------------------------PHRPVFILVGHKCDLES---  123 (211)
T ss_pred             CcEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCeEEEEEEcccccc---
Confidence            9999999999999998 888999987765321                            12578999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                        .+.+..++..++++.+++.+++|||+++.|++++++.|...++.
T Consensus       124 --~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~  167 (211)
T cd04111         124 --QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYE  167 (211)
T ss_pred             --ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              45566677889999999999999999999999999999988754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.87  E-value=2.3e-21  Score=190.75  Aligned_cols=160  Identities=19%  Similarity=0.274  Sum_probs=124.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+++|++|||||||+++|+++.  ..+.||++..|.  +..........++|||++|++++..+...+    ++  +
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~   72 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--KQIEVDGQQCMLEILDTAGTEQFTAMRDLY----IK--N   72 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEE--EEEEECCEEEEEEEEECCCccccchHHHHH----hh--c
Confidence            3699999999999999999999864  456677763332  222222223478999999999999888877    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||+++++++ +.+..|++.+.+...                            ..++|+++|+||+|+..   
T Consensus        73 ~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~---  120 (163)
T cd04136          73 GQGFVLVYSITSQSSF-NDLQDLREQILRVKD----------------------------TENVPMVLVGNKCDLED---  120 (163)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc---
Confidence            9999999999999998 888888887765321                            12589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .+....++...++..+++++++|||+++.|++++++.|...+
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         121 --ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             --cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence              344455667788888899999999999999999998887653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.87  E-value=2.9e-21  Score=190.34  Aligned_cols=158  Identities=17%  Similarity=0.287  Sum_probs=130.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      ||+++|+++||||||+++|.++  ..++.+|++.++........ .....++|||++|++++..+...+    ++  +++
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~----~~--~~~   73 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERFDSLRDIF----YR--NSD   73 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGGHHHHHHH----HT--TES
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-cccccccccccccccccccccccc----cc--ccc
Confidence            7999999999999999999986  45777888877543333322 223489999999999988887776    22  599


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|||+++++|| +++..|+..+.....                             .++|++|||||+|+.     +
T Consensus        74 ~~ii~fd~~~~~S~-~~~~~~~~~i~~~~~-----------------------------~~~~iivvg~K~D~~-----~  118 (162)
T PF00071_consen   74 AIIIVFDVTDEESF-ENLKKWLEEIQKYKP-----------------------------EDIPIIVVGNKSDLS-----D  118 (162)
T ss_dssp             EEEEEEETTBHHHH-HTHHHHHHHHHHHST-----------------------------TTSEEEEEEETTTGG-----G
T ss_pred             cccccccccccccc-ccccccccccccccc-----------------------------ccccceeeecccccc-----c
Confidence            99999999999999 899999998877543                             258999999999985     2


Q ss_pred             hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+.+..++++++|.++++.+++|||+++.|+++++..+.+.+
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  119 EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            577778899999999999999999999999999988877665

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04175 Rap1 Rap1 subgroup

Probab=99.87  E-value=3e-21  Score=191.16  Aligned_cols=160  Identities=20%  Similarity=0.285  Sum_probs=125.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+++|++|||||||+++|+++.  ..+.+|++..|.  ...........++||||+|++++..+...+    ++  +
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~   72 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--KQVEVDGQQCMLEILDTAGTEQFTAMRDLY----MK--N   72 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE--EEEEECCEEEEEEEEECCCcccchhHHHHH----Hh--h
Confidence            4699999999999999999999763  456688875542  222112223478999999999999998888    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||++++.+| +.+..|+..+.+...                            ..++|++||+||+|+..   
T Consensus        73 ~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~---  120 (164)
T cd04175          73 GQGFVLVYSITAQSTF-NDLQDLREQILRVKD----------------------------TEDVPMILVGNKCDLED---  120 (164)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECCcchh---
Confidence            9999999999999998 888888887754321                            13589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        ++......+..+++.+++++++|||+++.|+++++..|...+
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         121 --ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             --ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence              334445567788888999999999999999999999887654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.87  E-value=3.3e-22  Score=214.71  Aligned_cols=239  Identities=18%  Similarity=0.115  Sum_probs=180.5

Q ss_pred             cccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce-EEEEEEcCCCcch-----
Q psy11649         26 VHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD-ICHLWELGSGTSR-----   96 (890)
Q Consensus        26 ~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~-~l~IwDlpG~~~~-----   96 (890)
                      .++...+++..+|+|||.|+||||||+++|++    .++.++ +|.|++..   |....+. ++|+.|+||....     
T Consensus        54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTn----t~seva-~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~  128 (365)
T COG1163          54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTN----TKSEVA-DYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGR  128 (365)
T ss_pred             CcceEeccCCeEEEEEcCCCccHHHHHHHHhC----CCcccc-ccCceecccccceEeecCceEEEEcCcccccCcccCC
Confidence            67899999999999999999999999999999    445555 67777766   5444444 9999999986533     


Q ss_pred             ---hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHH---------------------------------
Q psy11649         97 ---LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFR---------------------------------  140 (890)
Q Consensus        97 ---~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~---------------------------------  140 (890)
                         .+++...|+       ||+||+|+|+..+.+..+.+...++...                                 
T Consensus       129 grG~~vlsv~R~-------ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~  201 (365)
T COG1163         129 GRGRQVLSVARN-------ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDE  201 (365)
T ss_pred             CCcceeeeeecc-------CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCH
Confidence               334444343       9999999999988763355555444433                                 


Q ss_pred             HHHhhhhhhh---hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEE
Q psy11649        141 AIFESNESVR---EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFH  217 (890)
Q Consensus       141 e~~~~ll~~~---~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~et  217 (890)
                      +.+..++.++   ++.+.+++.++.++..|....+...+|.++|.||.|+..          .+++..+.+..  ..+++
T Consensus       202 ~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~----------~e~~~~l~~~~--~~v~i  269 (365)
T COG1163         202 DTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG----------LEELERLARKP--NSVPI  269 (365)
T ss_pred             HHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccC----------HHHHHHHHhcc--ceEEE
Confidence            2222233333   555566666677777776667777899999999999962          23455555555  67999


Q ss_pred             eccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CCCCCCccccccccccccchhHHHhhc
Q psy11649        218 SSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGKDASLESGGRGFNRSRGMKFEKKRG  296 (890)
Q Consensus       218 SAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~~~~~~~~~~~~~~~~~~~f~~~~~  296 (890)
                      ||+++.|+++|++-|...+           +..+.++.|.|....  ...|+ +|+++++.++|+.+|+++..+|+++++
T Consensus       270 sa~~~~nld~L~e~i~~~L-----------~liRVYtK~~g~~pd--~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~V  336 (365)
T COG1163         270 SAKKGINLDELKERIWDVL-----------GLIRVYTKPPGEEPD--FDEPLILRRGSTVGDVCRKIHRDLVENFRYARV  336 (365)
T ss_pred             ecccCCCHHHHHHHHHHhh-----------CeEEEEecCCCCCCC--CCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEE
Confidence            9999999999999999887           566677777776553  45688 899999999999999999999999999


Q ss_pred             ccccc
Q psy11649        297 WIEGT  301 (890)
Q Consensus       297 w~~~~  301 (890)
                      |-++.
T Consensus       337 WGkSv  341 (365)
T COG1163         337 WGKSV  341 (365)
T ss_pred             eccCC
Confidence            96543

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.87  E-value=4.3e-21  Score=193.11  Aligned_cols=164  Identities=21%  Similarity=0.230  Sum_probs=128.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      ||+++|++|||||||+++|.++.  +.|.||++.+|........ .....++|||++|++++..+...+    ++  ++|
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ad   74 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-GVPFSLQLWDTAGQERFKCIASTY----YR--GAQ   74 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHhhHHHH----hc--CCC
Confidence            79999999999999999999974  4778999988753333221 123489999999999988888777    22  599


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|||++++.++ +.+..|++.+.+...                            +..+|+++||||+|+...   .
T Consensus        75 ~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~~iilVgnK~Dl~~~---~  122 (170)
T cd04108          75 AIIIVFDLTDVASL-EHTRQWLEDALKEND----------------------------PSSVLLFLVGTKKDLSSP---A  122 (170)
T ss_pred             EEEEEEECcCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCeEEEEEEChhcCcc---c
Confidence            99999999999998 888889987654321                            114689999999998521   1


Q ss_pred             hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                      ......+.+..++..+++.++++||+++.|++++++.|...++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~~  167 (170)
T cd04108         123 QYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFEL  167 (170)
T ss_pred             cccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            122345667888888999999999999999999999998887653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04112 Rab26 Rab26 subfamily

Probab=99.87  E-value=3.5e-21  Score=197.02  Aligned_cols=162  Identities=17%  Similarity=0.229  Sum_probs=129.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +||+|+|++|||||||+++|++...   .+.+|++.++....... ......++|||+||+.++..+...+    ++  +
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   73 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQERFRSVTHAY----YR--D   73 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHHHHHhhHHH----cc--C
Confidence            4899999999999999999998643   56688887764322221 1123489999999999888877666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||+++++++ +++..|+..+.+...                             .++|+++||||+|+..   
T Consensus        74 ad~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piiiv~NK~Dl~~---  120 (191)
T cd04112          74 AHALLLLYDITNKASF-DNIRAWLTEIKEYAQ-----------------------------EDVVIMLLGNKADMSG---  120 (191)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEEcccchh---
Confidence            9999999999999998 888889887765422                             2689999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                        .+....++++.++..++++++++||++|.|++++++.|...+.+.
T Consensus       121 --~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         121 --ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             --ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence              455556778899999999999999999999999999999887543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.87  E-value=3.7e-21  Score=190.39  Aligned_cols=160  Identities=21%  Similarity=0.312  Sum_probs=128.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++|+++.  ..+.|+++.+|........ .....+++||+||+.++..+...+    ++  +
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~----~~--~   75 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-GKTIKAQIWDTAGQERYRAITSAY----YR--G   75 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHH----HC--C
Confidence            4799999999999999999999864  3567888877654333221 122379999999999888887776    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++.++ +++..|++.+.+...                             .++|+++||||+|+..   
T Consensus        76 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~pi~vv~nK~Dl~~---  122 (165)
T cd01868          76 AVGALLVYDITKKQTF-ENVERWLKELRDHAD-----------------------------SNIVIMLVGNKSDLRH---  122 (165)
T ss_pred             CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc---
Confidence            8999999999999998 888999987766432                             2589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .+....++...++...++.++++||++|.|++++++.|...+
T Consensus       123 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         123 --LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             --cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence              355556678888888899999999999999999999887665

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.87  E-value=4.2e-21  Score=187.73  Aligned_cols=159  Identities=18%  Similarity=0.278  Sum_probs=124.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+++|++|||||||+++|+++.  ..+.||++..|.  ...........+++||++|++++..+...+    ++  +
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~----~~--~   72 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQY----MR--T   72 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEE--EEEEECCEEEEEEEEECCCCcchHHHHHHH----Hh--c
Confidence            3689999999999999999999864  466677775542  222111122378999999999998888887    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||+++..++ +.+..|...+.+...                            ..++|+++|+||+|+.    
T Consensus        73 ~~~~i~v~~~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piivv~nK~Dl~----  119 (162)
T cd04138          73 GEGFLCVFAINSRKSF-EDIHTYREQIKRVKD----------------------------SDDVPMVLVGNKCDLA----  119 (162)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECcccc----
Confidence            9999999999999988 788888877665321                            1368999999999985    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .+.....+++.++..+++++++|||++|.|++++++.|...+
T Consensus       120 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         120 --ARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             --cceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence              244456678888888999999999999999999998887653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04116 Rab9 Rab9 subfamily

Probab=99.87  E-value=5.1e-21  Score=190.60  Aligned_cols=164  Identities=15%  Similarity=0.211  Sum_probs=127.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      +..+||+++|++|||||||+++|+++..  .+.++++.++...... .......++|||++|++++..+...+    ++ 
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~~~~~~~~----~~-   76 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLE-VDGHFVTLQIWDTAGQERFRSLRTPF----YR-   76 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEE-ECCeEEEEEEEeCCChHHHHHhHHHH----hc-
Confidence            3568999999999999999999998643  4567877765322222 12223479999999999988888777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++.++ +.+..|...+......                         ....++|+++||||+|+.  
T Consensus        77 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~piilv~nK~Dl~--  127 (170)
T cd04116          77 -GSDCCLLTFAVDDSQSF-QNLSNWKKEFIYYADV-------------------------KEPESFPFVVLGNKNDIP--  127 (170)
T ss_pred             -CCCEEEEEEECCCHHHH-HhHHHHHHHHHHhccc-------------------------ccCCCCcEEEEEECcccc--
Confidence             59999999999999998 8888998877654321                         122368999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                          .+.+..+++++++..++. +++++||+++.|++++++.+...
T Consensus       128 ----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         128 ----ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ----ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence                455667788999999884 79999999999999998877643

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04126 Rab20 Rab20 subfamily

Probab=99.87  E-value=3.4e-21  Score=202.77  Aligned_cols=164  Identities=16%  Similarity=0.218  Sum_probs=130.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      +||+++|++|||||||+++|+++.. .+.+|++.+|..  ...   ....+.|||++|++.+..+...+    ++  +++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~--~~~---~~~~l~iwDt~G~e~~~~l~~~~----~~--~ad   69 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYL--KQW---GPYNISIWDTAGREQFHGLGSMY----CR--GAA   69 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEE--EEe---eEEEEEEEeCCCcccchhhHHHH----hc--cCC
Confidence            4899999999999999999998753 567888876532  211   22379999999999998888877    22  599


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC--
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE--  192 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d--  192 (890)
                      ++|+|||++++.+| +++..|+..+.+.                             ...++|++|||||+|+..+..  
T Consensus        70 ~~IlV~Dvt~~~Sf-~~l~~~~~~l~~~-----------------------------~~~~~piIlVgNK~DL~~~~~~~  119 (220)
T cd04126          70 AVILTYDVSNVQSL-EELEDRFLGLTDT-----------------------------ANEDCLFAVVGNKLDLTEEGALA  119 (220)
T ss_pred             EEEEEEECCCHHHH-HHHHHHHHHHHHh-----------------------------cCCCCcEEEEEECcccccccccc
Confidence            99999999999998 7887777655432                             112589999999999964111  


Q ss_pred             ------------cchhhhhHHHHHHHHHHcC--------------CeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649        193 ------------PNKKRIAVQCLRYLAHVNG--------------ASLLFHSSLDPGLVKRTRDILNHYAFSSH  240 (890)
Q Consensus       193 ------------~e~r~~i~~~lr~la~~~G--------------a~l~etSAK~~~nId~Lk~~I~~~lf~~~  240 (890)
                                  ..++.+..+++..+|.+.+              ++|++|||++|.|+++++..+...++...
T Consensus       120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~  193 (220)
T cd04126         120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI  193 (220)
T ss_pred             cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence                        1257788899999999887              68999999999999999999988876543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.87  E-value=3.5e-21  Score=194.82  Aligned_cols=162  Identities=15%  Similarity=0.146  Sum_probs=125.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++.  .++.||++..|..  ..........++|||++|++++..+...+    ++  ++
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~a   73 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV--TVMIGGEPYTLGLFDTAGQEDYDRLRPLS----YP--QT   73 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE--EEEECCEEEEEEEEECCCccchhhhhhhh----cc--cC
Confidence            689999999999999999999864  4778999866532  22111223489999999999988877766    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +++|+|||++++++| +++. .|...++...                              ..+|++|||||+|+..+..
T Consensus        74 ~~~ilv~d~~~~~s~-~~~~~~w~~~i~~~~------------------------------~~~piilvgnK~Dl~~~~~  122 (175)
T cd01874          74 DVFLVCFSVVSPSSF-ENVKEKWVPEITHHC------------------------------PKTPFLLVGTQIDLRDDPS  122 (175)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEECHhhhhChh
Confidence            999999999999998 7775 5887665421                              1589999999999853210


Q ss_pred             -------cchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 -------PNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 -------~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                             ...+.+..++++++++.++ +.+++|||++|.|++++++.+...+
T Consensus       123 ~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         123 TIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             hHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence                   0125667788899999988 6899999999999999988877643

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04140 ARHI_like ARHI subfamily

Probab=99.87  E-value=5.5e-21  Score=190.10  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=125.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++.  ..+.|+++..|.  ...........+++||++|++++..+...+    ++  ++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~   73 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCSKNICTLQITDTTGSHQFPAMQRLS----IS--KG   73 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE--EEEEECCEEEEEEEEECCCCCcchHHHHHH----hh--cC
Confidence            689999999999999999999864  456677775542  222212223489999999999988877666    22  49


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|||+++++++ +.+..|.+.+++....                          ....+|+++||||+|+..    
T Consensus        74 ~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl~~----  122 (165)
T cd04140          74 HAFILVYSVTSKQSL-EELKPIYELICEIKGN--------------------------NIEKIPIMLVGNKCDESH----  122 (165)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC--------------------------CCCCCCEEEEEECccccc----
Confidence            999999999999998 8888898877664321                          123689999999999852    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                       .+.+...+...++..+++.+++|||++|.|++++++.|..+
T Consensus       123 -~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         123 -KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             -cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence             35556667788888899999999999999999998888654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.86  E-value=5.2e-21  Score=200.86  Aligned_cols=161  Identities=15%  Similarity=0.168  Sum_probs=128.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      +..+||+++|++|||||||+++++.+.  ..+.+|+|.++...... .......++|||++|++++..+...+    ++ 
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~-   84 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-TNCGKIRFYCWDTAGQEKFGGLRDGY----YI-   84 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEE-ECCeEEEEEEEECCCchhhhhhhHHH----cc-
Confidence            567999999999999999999998764  46788998775432222 11223489999999999998888777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++++| +++..|+..+.+..                              .++|++|||||+|+.  
T Consensus        85 -~~~~~ilvfD~~~~~s~-~~i~~w~~~i~~~~------------------------------~~~piilvgNK~Dl~--  130 (219)
T PLN03071         85 -HGQCAIIMFDVTARLTY-KNVPTWHRDLCRVC------------------------------ENIPIVLCGNKVDVK--  130 (219)
T ss_pred             -cccEEEEEEeCCCHHHH-HHHHHHHHHHHHhC------------------------------CCCcEEEEEEchhhh--
Confidence             59999999999999998 88999998887532                              158999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.+....+ .++...++.+++|||++|.|+++++++|...++.
T Consensus       131 ----~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~  173 (219)
T PLN03071        131 ----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (219)
T ss_pred             ----hccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence                222333344 6778889999999999999999999999888753

>KOG0088|consensus

Probab=99.86  E-value=4.3e-22  Score=193.37  Aligned_cols=167  Identities=19%  Similarity=0.311  Sum_probs=141.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEecc-ccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKT-VMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~-~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ....+|++++|...||||||+-|++++.++.+.-.++.-.|..+.... +....++||||+|+++|..+-+.|    |+ 
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY----YR-   84 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY----YR-   84 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE----Ee-
Confidence            456799999999999999999999998776654444444444444222 223389999999999999999999    55 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +.+++++|||+|+.+|| ..+..|..+++....+                             .+-++|||||+|+.  
T Consensus        85 -gSnGalLVyDITDrdSF-qKVKnWV~Elr~mlGn-----------------------------ei~l~IVGNKiDLE--  131 (218)
T KOG0088|consen   85 -GSNGALLVYDITDRDSF-QKVKNWVLELRTMLGN-----------------------------EIELLIVGNKIDLE--  131 (218)
T ss_pred             -CCCceEEEEeccchHHH-HHHHHHHHHHHHHhCC-----------------------------eeEEEEecCcccHH--
Confidence             69999999999999999 9999999998886554                             57899999999994  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                         ++|.+..+++..+|..-|+.+++|||+++.||.++++.+.......
T Consensus       132 ---eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~  177 (218)
T KOG0088|consen  132 ---EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEH  177 (218)
T ss_pred             ---HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHH
Confidence               6899999999999999999999999999999999999998887653

>KOG0083|consensus

Probab=99.86  E-value=1.4e-22  Score=191.71  Aligned_cols=158  Identities=18%  Similarity=0.257  Sum_probs=136.7

Q ss_pred             EEEcCCCCCHHHHHHHHHcC---CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         39 LLIGTKSVGKSTLVFRFLEK---NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        39 vLVGd~nvGKSSLInrL~~~---~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      +++|++++|||+|+-||..+   .++..+|+|++|.. +.......+++++||||+||++|+++...|    |+  ++|+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rn-kli~~~~~kvklqiwdtagqerfrsvt~ay----yr--da~a   73 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRN-KLIDMDDKKVKLQIWDTAGQERFRSVTHAY----YR--DADA   73 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeecccc-ceeccCCcEEEEEEeeccchHHHhhhhHhh----hc--ccce
Confidence            37899999999999998876   46788999999753 222344445699999999999999999999    44  6999


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      .+++||++|..|| +++..|+.+|.++...                             .+.++++|||+|+.     .+
T Consensus        74 llllydiankasf-dn~~~wlsei~ey~k~-----------------------------~v~l~llgnk~d~a-----~e  118 (192)
T KOG0083|consen   74 LLLLYDIANKASF-DNCQAWLSEIHEYAKE-----------------------------AVALMLLGNKCDLA-----HE  118 (192)
T ss_pred             eeeeeecccchhH-HHHHHHHHHHHHHHHh-----------------------------hHhHhhhccccccc-----hh
Confidence            9999999999999 9999999999998766                             46789999999995     36


Q ss_pred             hhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        196 KRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       196 r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |.+..++.+++|+.||+++++||||+|-|++..+-.|...+..
T Consensus       119 r~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  119 RAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             hccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            8888899999999999999999999999999998888777644

>cd04176 Rap2 Rap2 subgroup

Probab=99.86  E-value=7.5e-21  Score=187.85  Aligned_cols=159  Identities=17%  Similarity=0.288  Sum_probs=122.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+++|++|||||||+++++.+.  ..+.+|++ ++....... ......++|||++|++++..+...+    ++  +
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~   72 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEV-DSSPSVLEILDTAGTEQFASMRDLY----IK--N   72 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEE-CCEEEEEEEEECCCcccccchHHHH----Hh--h
Confidence            4689999999999999999999864  35556665 322112111 1223378999999999999888887    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||++++.+| +++..|+..+.+...                            ..++|+++||||+|+..   
T Consensus        73 ad~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piviv~nK~Dl~~---  120 (163)
T cd04176          73 GQGFIVVYSLVNQQTF-QDIKPMRDQIVRVKG----------------------------YEKVPIILVGNKVDLES---  120 (163)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccchh---
Confidence            9999999999999998 888888887665321                            13689999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        ++.....+...++..+++++++|||+++.|++++++.+...
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         121 --EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             --cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence              33444456778888889999999999999999999888764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04110 Rab35 Rab35 subfamily

Probab=99.86  E-value=8.6e-21  Score=195.69  Aligned_cols=162  Identities=19%  Similarity=0.253  Sum_probs=130.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+|+|++|||||||+++|+++.  ..+.+|++++|....... ......++|||+||++.+..+...+    ++  
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~----~~--   77 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTITSTY----YR--   77 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHHHHHH----hC--
Confidence            36899999999999999999999864  467789988765333321 1122379999999999988888777    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++|+|||++++++| +.+..|++.+....                              ..+|++|||||+|+.+  
T Consensus        78 ~a~~iilv~D~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~piivVgNK~Dl~~--  124 (199)
T cd04110          78 GTHGVIVVYDVTNGESF-VNVKRWLQEIEQNC------------------------------DDVCKVLVGNKNDDPE--  124 (199)
T ss_pred             CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc--
Confidence            58999999999999998 88889998765432                              1479999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         .+.....++..++..+++.+++|||++|.|+++++++|...++.
T Consensus       125 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         125 ---RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             ---ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence               34445677888888899999999999999999999999888754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01866 Rab2 Rab2 subfamily

Probab=99.86  E-value=1.1e-20  Score=188.65  Aligned_cols=161  Identities=17%  Similarity=0.241  Sum_probs=127.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|++..  ..+.++++.++....... ......+.|||++|++++..+...+    ++  +
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   76 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSY----YR--G   76 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHHHHHH----hc--c
Confidence            5899999999999999999999864  344567776653222221 1222389999999998888777666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||++++.++ +.+..|+..+++...                             .++|++||+||+|+.+   
T Consensus        77 ~d~il~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~pvivv~nK~Dl~~---  123 (168)
T cd01866          77 AAGALLVYDITRRETF-NHLTSWLEDARQHSN-----------------------------SNMTIMLIGNKCDLES---  123 (168)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEECccccc---
Confidence            9999999999999998 889999987766421                             2589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        ++....++++.++..+++.++++||+++.|+++++..+.+.++
T Consensus       124 --~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~  166 (168)
T cd01866         124 --RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIY  166 (168)
T ss_pred             --ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence              3445566788889999999999999999999999999888775

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03110 Rab GTPase; Provisional

Probab=99.86  E-value=9.2e-21  Score=198.40  Aligned_cols=163  Identities=19%  Similarity=0.297  Sum_probs=134.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+++|++|||||||+++|++...  .+.+|++++|........ .....++|||++|+.++..+...+    ++  
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~~~~~~~~~----~~--   83 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQERYRAITSAY----YR--   83 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----hC--
Confidence            468999999999999999999998643  567899988654443322 123489999999999998888777    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++|+|||++++.+| +++..|+..++....                             .++|+++||||+|+.   
T Consensus        84 ~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~piiiv~nK~Dl~---  130 (216)
T PLN03110         84 GAVGALLVYDITKRQTF-DNVQRWLRELRDHAD-----------------------------SNIVIMMAGNKSDLN---  130 (216)
T ss_pred             CCCEEEEEEECCChHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEEChhcc---
Confidence            59999999999999998 889999987765321                             268999999999984   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                        ..+....+.++.++..+++++++|||++|.|++++++.|...++.
T Consensus       131 --~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        131 --HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             --cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              255566677889999999999999999999999999999888865

>cd01864 Rab19 Rab19 subfamily

Probab=99.86  E-value=9.8e-21  Score=187.87  Aligned_cols=159  Identities=19%  Similarity=0.279  Sum_probs=125.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++|.++.  ..+.++++.++........ .....+++||+||++.+..+...+    ++  +
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~----~~--~   75 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-GKRVKLQIWDTAGQERFRTITQSY----YR--S   75 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHH----hc--c
Confidence            5899999999999999999998753  3556788777644333221 122378999999998888777666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++++|||++++.++ +.+..|++.+....                             ..++|+++|+||+|+..   
T Consensus        76 ~d~~llv~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~p~ivv~nK~Dl~~---  122 (165)
T cd01864          76 ANGAIIAYDITRRSSF-ESVPHWIEEVEKYG-----------------------------ASNVVLLLIGNKCDLEE---  122 (165)
T ss_pred             CCEEEEEEECcCHHHH-HhHHHHHHHHHHhC-----------------------------CCCCcEEEEEECccccc---
Confidence            9999999999999998 88889998776531                             23689999999999853   


Q ss_pred             cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        .+......++.++..+++ .++++||++|.|++++++.+...
T Consensus       123 --~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         123 --QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             --ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence              344556678889998886 58999999999999998888754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.86  E-value=1.1e-20  Score=186.58  Aligned_cols=159  Identities=19%  Similarity=0.272  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|++..  ..+.+|++..|.  ...........+++||+||++++..+...+    ++  ++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~----~~--~~   72 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR--KQIEIDGEVCLLDILDTAGQEEFSAMRDQY----MR--TG   72 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE--EEEEECCEEEEEEEEECCCcccchHHHHHH----Hh--hC
Confidence            489999999999999999999863  456677664432  222222223489999999999998888777    22  48


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|||+++++++ +.+..|...+.+...                            ...+|+++||||+|+..    
T Consensus        73 ~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~pii~v~nK~Dl~~----  119 (164)
T smart00173       73 EGFLLVYSITDRQSF-EEIKKFREQILRVKD----------------------------RDDVPIVLVGNKCDLES----  119 (164)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc----
Confidence            999999999999998 888888876654321                            12589999999999852    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       .+....+.+..++..+++++++|||+++.|++++++.|...+
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  161 (164)
T smart00173      120 -ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI  161 (164)
T ss_pred             -cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence             344555677888888999999999999999999999887664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04125 RabA_like RabA-like subfamily

Probab=99.86  E-value=1.2e-20  Score=192.17  Aligned_cols=161  Identities=15%  Similarity=0.199  Sum_probs=128.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++..  .+.+|++.+|....... ......+++||++|++.+..+...+    ++  ++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~----~~--~~   73 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSLNNSY----YR--GA   73 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhhHHHH----cc--CC
Confidence            4899999999999999999998754  36789887765433321 1123478999999998888777776    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|||++++.+| +++..|+..+.....                             ..+|+++||||+|+.+    
T Consensus        74 d~iilv~d~~~~~s~-~~i~~~~~~i~~~~~-----------------------------~~~~~ivv~nK~Dl~~----  119 (188)
T cd04125          74 HGYLLVYDVTDQESF-ENLKFWINEINRYAR-----------------------------ENVIKVIVANKSDLVN----  119 (188)
T ss_pred             CEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECCCCcc----
Confidence            999999999999998 888889887765321                             2479999999999852    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       .+.+.....+.++..++++++++||+++.|++++++.+.+.++.
T Consensus       120 -~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         120 -NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIK  163 (188)
T ss_pred             -cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             44455667788888899999999999999999999999888753

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.86  E-value=8.1e-21  Score=194.18  Aligned_cols=161  Identities=16%  Similarity=0.246  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      ||+++|++|||||||+++|+++.  ..+.+|++..|.  +..........++||||+|++++..+...+    ++  ++|
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ad   72 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR--KQVVVDGQPCMLEVLDTAGQEEYTALRDQW----IR--EGE   72 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----HH--hCC
Confidence            58999999999999999999763  456788875542  222111222379999999999998888777    22  599


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|||++++.+| +.+..|++.+......                          ....+|++|||||+|+..     
T Consensus        73 ~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilvgNK~Dl~~-----  120 (190)
T cd04144          73 GFILVYSITSRSTF-ERVERFREQIQRVKDE--------------------------SAADVPIMIVGNKCDKVY-----  120 (190)
T ss_pred             EEEEEEECCCHHHH-HHHHHHHHHHHHHhcc--------------------------cCCCCCEEEEEEChhccc-----
Confidence            99999999999998 8899998877654321                          123589999999999852     


Q ss_pred             hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .+.+...+...++..+++.++++||++|.|++++++.+...+.
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~  163 (190)
T cd04144         121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR  163 (190)
T ss_pred             cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            4455566678888889999999999999999999999988764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.86  E-value=1.3e-20  Score=192.54  Aligned_cols=164  Identities=20%  Similarity=0.269  Sum_probs=129.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      +.++||+|+|++|||||||+++|+++.  ..+.||++..|.  +..........++||||+|++.+..+...+    ++ 
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~----~~-   75 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR--KQCVIDEETCLLDILDTAGQEEYSAMRDQY----MR-   75 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE--EEEEECCEEEEEEEEeCCCCccchhhHHHH----hh-
Confidence            347899999999999999999999864  466788876652  221112223479999999999999988887    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++++| +.+..|...+.+...                            ..++|+++|+||+|+.. 
T Consensus        76 -~~d~iilv~D~s~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piiiv~nK~Dl~~-  124 (189)
T PTZ00369         76 -TGQGFLCVYSITSRSSF-EEIASFREQILRVKD----------------------------KDRVPMILVGNKCDLDS-  124 (189)
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc-
Confidence             59999999999999998 888888887654321                            12689999999999842 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.+...++..++..+++++++|||++|.|++++++.|...+..
T Consensus       125 ----~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        125 ----ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             ----ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                34445566778888889999999999999999999999877643

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.86  E-value=1e-20  Score=189.41  Aligned_cols=158  Identities=15%  Similarity=0.176  Sum_probs=122.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++++++.  ..+.+|++.++....... ......+++||++|++.+..+...+    +.  ++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~   73 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGY----YI--GG   73 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHH----hc--CC
Confidence            489999999999999999998753  456788887754322222 2223489999999998887776666    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|||+++++++ +.+..|+..+.+...                              .+|+++||||+|+..    
T Consensus        74 d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------------------~~piiiv~nK~Dl~~----  118 (166)
T cd00877          74 QCAIIMFDVTSRVTY-KNVPNWHRDLVRVCG------------------------------NIPIVLCGNKVDIKD----  118 (166)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC------------------------------CCcEEEEEEchhccc----
Confidence            999999999999998 888899987765421                              589999999999852    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                        +... ....+++...++.+++|||++|.|++++++.|...+.+
T Consensus       119 --~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         119 --RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             --ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence              2222 23456777788999999999999999999999988754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.86  E-value=7.8e-21  Score=196.34  Aligned_cols=161  Identities=21%  Similarity=0.209  Sum_probs=118.6

Q ss_pred             ceEEEEEcCCCCCHHHHHH-HHHcC-------CCCCCCCccc-e-eEEEE----E-E-eccccceEEEEEEcCCCcchhh
Q psy11649         35 ERTLLLIGTKSVGKSTLVF-RFLEK-------NDTPKPTLAL-E-YIYAR----K-S-GKTVMKDICHLWELGSGTSRLE   98 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLIn-rL~~~-------~~~~kptigv-d-Y~f~~----~-~-g~~~~k~~l~IwDlpG~~~~~~   98 (890)
                      .+||+++|++|||||||+. +++++       ...+.||++. + |....    + . ........++||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 66553       2356788863 3 32111    0 0 1112234899999999864  2


Q ss_pred             HHhhhhccccccccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc
Q psy11649         99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP  177 (890)
Q Consensus        99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP  177 (890)
                      +...+    ++  +++++|+|||++++.|| +++. .|++.+++..                              .++|
T Consensus        80 ~~~~~----~~--~ad~iilv~d~t~~~Sf-~~~~~~w~~~i~~~~------------------------------~~~p  122 (195)
T cd01873          80 DRRFA----YG--RSDVVLLCFSIASPNSL-RNVKTMWYPEIRHFC------------------------------PRVP  122 (195)
T ss_pred             hhccc----CC--CCCEEEEEEECCChhHH-HHHHHHHHHHHHHhC------------------------------CCCC
Confidence            33333    33  69999999999999998 7776 6988775432                              1489


Q ss_pred             EEEEeecccCCCCCC--------------cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        178 LILIGGKYDLFENLE--------------PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       178 iIVVgNK~Dl~~d~d--------------~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      +++||||+|+.....              ...+.+..++++++|+++|+.|++|||++|.|++++++.+..
T Consensus       123 iilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         123 VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             EEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            999999999853100              014677888999999999999999999999999999887764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.86  E-value=2e-20  Score=184.25  Aligned_cols=159  Identities=19%  Similarity=0.268  Sum_probs=123.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++++++.  ..+.++++..|.  ...........+++||+||++++..+...+    ++  +
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   73 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT--KQCEIDGQWAILDILDTAGQEEFSAMREQY----MR--T   73 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE--EEEEECCEEEEEEEEECCCCcchhHHHHHH----Hh--h
Confidence            4799999999999999999999863  355677764432  221111122379999999999998888777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||++++.++ +.+..|...+.+...                            ..++|+++|+||+|+..   
T Consensus        74 ~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piiiv~NK~Dl~~---  121 (164)
T cd04145          74 GEGFLLVFSVTDRGSF-EEVDKFHTQILRVKD----------------------------RDEFPMILVGNKADLEH---  121 (164)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC----------------------------CCCCCEEEEeeCccccc---
Confidence            9999999999999998 888888876655321                            23689999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        ++....+...+++..++++++++||++|.|++++++.|...
T Consensus       122 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  162 (164)
T cd04145         122 --QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRV  162 (164)
T ss_pred             --cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHh
Confidence              33344556788888899999999999999999999888765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.86  E-value=1.6e-20  Score=185.35  Aligned_cols=159  Identities=18%  Similarity=0.191  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC----CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK----NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~----~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      +||+++|++|||||||+++|.++    ..++.+|++.++..............+.+||++|++.+..+...+    +.  
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--   74 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNY----WE--   74 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHH----hC--
Confidence            48999999999999999999863    247778888775432222222223489999999998888877776    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++++|||++++.++ +.+..|++.+....                              .++|+++|+||+|+..  
T Consensus        75 ~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------~~~p~ilv~nK~Dl~~--  121 (164)
T cd04101          75 SPSVFILVYDVSNKASF-ENCSRWVNKVRTAS------------------------------KHMPGVLVGNKMDLAD--  121 (164)
T ss_pred             CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc--
Confidence            59999999999999998 78889988766531                              2589999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         ++.......+.++..++++++++||+++.|++++++.|.+.+
T Consensus       122 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         122 ---KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             ---ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence               333444556677888899999999999999999998887653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.86  E-value=1.3e-20  Score=190.47  Aligned_cols=160  Identities=19%  Similarity=0.191  Sum_probs=122.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+.+|+++.  ..+.||++..|.  ...........++||||+|++.+..+...+    ++  ++
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~   73 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTAGQEDYDRLRPLS----YP--QT   73 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE--EEEEECCEEEEEEEEECCCchhhhhhhhhh----cC--CC
Confidence            689999999999999999999863  577788864432  222222222389999999999888887777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      |++|+|||++++++| +++. .|++.+....                              .++|++|||||+|+..+..
T Consensus        74 d~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~------------------------------~~~piilvgnK~Dl~~~~~  122 (174)
T cd01871          74 DVFLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLRDDKD  122 (174)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEeeChhhccChh
Confidence            999999999999999 6664 6887665421                              1589999999999853110


Q ss_pred             -------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHH
Q psy11649        193 -------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       193 -------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~  234 (890)
                             ...+.+..+++..+|+.+++ .+++|||++|.|++++++.+..
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         123 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence                   01234667888999999995 8999999999999999888764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.85  E-value=1.6e-20  Score=198.01  Aligned_cols=163  Identities=17%  Similarity=0.224  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|||++|||||||+++|+++.  ..|.||++.+|.. ... .......++||||+|++.|..+...+    |+  ++
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~-~~~-~~~~~v~L~iwDt~G~e~~~~l~~~~----~~--~~   73 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTA-SFE-IDKRRIELNMWDTSGSSYYDNVRPLA----YP--DS   73 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEE-EEE-ECCEEEEEEEEeCCCcHHHHHHhHHh----cc--CC
Confidence            689999999999999999999864  4688999877642 111 12223489999999999998888777    33  69


Q ss_pred             cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      |++|+|||++++++| +++ ..|...++...                              .++|++|||||+|+..+..
T Consensus        74 d~illvfdis~~~Sf-~~i~~~w~~~~~~~~------------------------------~~~piiLVgnK~DL~~~~~  122 (222)
T cd04173          74 DAVLICFDISRPETL-DSVLKKWQGETQEFC------------------------------PNAKVVLVGCKLDMRTDLA  122 (222)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEEECcccccchh
Confidence            999999999999999 665 67876554321                              2589999999999854211


Q ss_pred             c-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHHh
Q psy11649        193 P-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYAF  237 (890)
Q Consensus       193 ~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~lf  237 (890)
                      .       ....+..++...+|+++|+ .|+||||+++.| +++++........
T Consensus       123 ~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~  176 (222)
T cd04173         123 TLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASL  176 (222)
T ss_pred             hhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence            0       0112566789999999996 899999999985 9999888777653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04134 Rho3 Rho3 subfamily

Probab=99.85  E-value=1.3e-20  Score=192.68  Aligned_cols=164  Identities=20%  Similarity=0.190  Sum_probs=123.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++.  ..+.||++.+|.  ...........++|||++|++.+..+...+    ++  ++
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~--~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~----~~--~a   72 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV--HDIFVDGLHIELSLWDTAGQEEFDRLRSLS----YA--DT   72 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE--EEEEECCEEEEEEEEECCCChhcccccccc----cc--CC
Confidence            489999999999999999999864  356788886653  222111222489999999998887776666    33  59


Q ss_pred             cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +++|+|||++++.+| +++. .|++.+....                              .++|++|||||+|+.....
T Consensus        73 ~~~ilv~dv~~~~sf-~~~~~~~~~~i~~~~------------------------------~~~piilvgNK~Dl~~~~~  121 (189)
T cd04134          73 DVIMLCFSVDSPDSL-ENVESKWLGEIREHC------------------------------PGVKLVLVALKCDLREARN  121 (189)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhhccChh
Confidence            999999999999999 6665 6887776421                              1589999999999863211


Q ss_pred             cc-------hhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PN-------KKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e-------~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      ..       .+.+...+...++...+ +.+++|||++|.|++++++.+...+..
T Consensus       122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         122 ERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            00       01234556778888887 689999999999999999999888753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.85  E-value=2.9e-20  Score=183.32  Aligned_cols=158  Identities=21%  Similarity=0.289  Sum_probs=124.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++.  ..+.++++.++........ .....+++||+||++.+..+...+    ++  ++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~----~~--~~   73 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFRSVTRSY----YR--GA   73 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHHHhHHHH----hc--CC
Confidence            589999999999999999999864  3456777766543222211 222489999999998888777766    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|||++++.++ .++..|+..++...                             ..++|+++|+||+|+..    
T Consensus        74 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iivv~nK~D~~~----  119 (161)
T cd04113          74 AGALLVYDITNRTSF-EALPTWLSDARALA-----------------------------SPNIVVILVGNKSDLAD----  119 (161)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCeEEEEEEchhcch----
Confidence            999999999999998 88888987665432                             22589999999999952    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                       .+....++++.++..+++.++++||+++.|++++++.+...
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         120 -QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             -hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence             44555677888999999999999999999999998887653

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01861 Rab6 Rab6 subfamily

Probab=99.85  E-value=3.6e-20  Score=182.10  Aligned_cols=158  Identities=17%  Similarity=0.250  Sum_probs=124.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|++...  .+.++++.+|........ ....++++||+||+.++..++..+    ++  ++
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~D~~G~~~~~~~~~~~----~~--~~   73 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-DKTVRLQLWDTAGQERFRSLIPSY----IR--DS   73 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----hc--cC
Confidence            4899999999999999999998643  556888877543333221 122479999999999888877777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|||++++++| +.+..|+..+....                             +.++|+++|+||+|+.     
T Consensus        74 ~~ii~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilv~nK~D~~-----  118 (161)
T cd01861          74 SVAVVVYDITNRQSF-DNTDKWIDDVRDER-----------------------------GNDVIIVLVGNKTDLS-----  118 (161)
T ss_pred             CEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCEEEEEEEChhcc-----
Confidence            999999999999998 88888888665421                             1258999999999984     


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +++.....+...++..+++.++++||+++.|++++++.|...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         119 DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            244555667888888889999999999999999999988764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.85  E-value=4.3e-20  Score=181.52  Aligned_cols=160  Identities=19%  Similarity=0.312  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|++..  ..+.++++.++...... .......+++||+||+..+..+...+    ++  ++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~~~~~~----~~--~~   73 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQERFRSITSSY----YR--GA   73 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEE-ECCEEEEEEEEECCChHHHHHHHHHH----hC--CC
Confidence            489999999999999999999864  35557777665422222 11222379999999998888777777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|||+++++++ +.+..|++.+..+..                             .++|+++|+||+|+..    
T Consensus        74 d~~ilv~d~~~~~s~-~~~~~~l~~~~~~~~-----------------------------~~~pivvv~nK~D~~~----  119 (164)
T smart00175       74 VGALLVYDITNRESF-ENLKNWLKELREYAD-----------------------------PNVVIMLVGNKSDLED----  119 (164)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEEchhccc----
Confidence            999999999999998 778889887655321                             2699999999999852    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       .+....+.+++++..+++.++++||+++.|++++.+.|...++
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      120 -QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             -ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence             2344456677888889999999999999999999999988763

Rab GTPases are implicated in vesicle trafficking.

>KOG0081|consensus

Probab=99.85  E-value=1.1e-21  Score=190.78  Aligned_cols=165  Identities=16%  Similarity=0.265  Sum_probs=136.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEec----c-c---cceEEEEEEcCCCcchhhHHhhh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGK----T-V---MKDICHLWELGSGTSRLEVASLF  103 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~----~-~---~k~~l~IwDlpG~~~~~~Li~~~  103 (890)
                      .-+|.+.+|++||||||++.+++.+.+  ....|+|+||.-+++...    . .   .+..+++|||+|+++|+++...+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            346889999999999999999999754  557899999876555511    1 1   12278999999999999999998


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                          ++  +|.+++++||+++..|| -++..|+..++.+.=-                  +          ...||++||
T Consensus        88 ----fR--DAMGFlLiFDlT~eqSF-LnvrnWlSQL~~hAYc------------------E----------~PDivlcGN  132 (219)
T KOG0081|consen   88 ----FR--DAMGFLLIFDLTSEQSF-LNVRNWLSQLQTHAYC------------------E----------NPDIVLCGN  132 (219)
T ss_pred             ----HH--hhccceEEEeccchHHH-HHHHHHHHHHHHhhcc------------------C----------CCCEEEEcC
Confidence                33  59999999999999999 8899999988765311                  1          235899999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |+|+.     .+|.+....++++|.+||.+||+|||-+|.|+++.-+.+..+++.
T Consensus       133 K~DL~-----~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  133 KADLE-----DQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMK  182 (219)
T ss_pred             ccchh-----hhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHH
Confidence            99995     489999999999999999999999999999999988888777653

>cd04124 RabL2 RabL2 subfamily

Probab=99.85  E-value=5.1e-20  Score=182.85  Aligned_cols=155  Identities=20%  Similarity=0.256  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +||+++|++|||||||+++|+++..  .+.++.+.++.  .... .......+++|||+|++++..+...+    ++  +
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   72 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLY--KHNAKFEGKTILVDFWDTAGQERFQTMHASY----YH--K   72 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEE--EEEEEECCEEEEEEEEeCCCchhhhhhhHHH----hC--C
Confidence            4899999999999999999998643  34455554432  2221 11223379999999999998888877    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||++++.++ +.+..|+..+++..                              .++|+++|+||+|+..   
T Consensus        73 ~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~p~ivv~nK~Dl~~---  118 (161)
T cd04124          73 AHACILVFDVTRKITY-KNLSKWYEELREYR------------------------------PEIPCIVVANKIDLDP---  118 (161)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC------------------------------CCCcEEEEEECccCch---
Confidence            9999999999999998 78889998775421                              1489999999999831   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                         .  .......++..++++++++||++|.|++++++.+...+.
T Consensus       119 ---~--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  158 (161)
T cd04124         119 ---S--VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV  158 (161)
T ss_pred             ---h--HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence               1  123455677788899999999999999999999887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.85  E-value=2.1e-20  Score=193.95  Aligned_cols=153  Identities=14%  Similarity=0.156  Sum_probs=122.1

Q ss_pred             EcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEE
Q psy11649         41 IGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVL  118 (890)
Q Consensus        41 VGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~III  118 (890)
                      ||++|||||||+++|+++.  ..+.+|+|.++....... ......++||||+|++++..+...+    ++  +++++|+
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l~~~~----~~--~ad~~il   73 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGLRDGY----YI--QGQCAII   73 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHH----hc--CCCEEEE
Confidence            6999999999999999754  367789987765332221 1223489999999999999888877    33  5999999


Q ss_pred             EEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhh
Q psy11649        119 MLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI  198 (890)
Q Consensus       119 V~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~  198 (890)
                      |||++++.+| +++..|.+.+++..                              .++|++|||||+|+..      +.+
T Consensus        74 V~D~t~~~S~-~~i~~w~~~i~~~~------------------------------~~~piilvgNK~Dl~~------~~v  116 (200)
T smart00176       74 MFDVTARVTY-KNVPNWHRDLVRVC------------------------------ENIPIVLCGNKVDVKD------RKV  116 (200)
T ss_pred             EEECCChHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECccccc------ccC
Confidence            9999999998 88899999887632                              1589999999999842      222


Q ss_pred             hHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        199 AVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       199 i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      ..+. ..++...++.+++|||++|.|++++++.|...++.
T Consensus       117 ~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      117 KAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             CHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            3333 36788889999999999999999999999988754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04118 Rab24 Rab24 subfamily

Probab=99.84  E-value=4.6e-20  Score=188.10  Aligned_cols=164  Identities=16%  Similarity=0.208  Sum_probs=127.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .||+|+|++|||||||+++|+++..   .+.+|++.+|...... .......+++||++|++++..+...+    ++  +
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~~~~~~~~----~~--~   73 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSERYEAMSRIY----YR--G   73 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEE-ECCEEEEEEEEECCCchhhhhhhHhh----cC--C
Confidence            4899999999999999999998643   4778888765332222 12222378999999999888777666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||++++.++ +.+..|++.+....                              .++|+++|+||+|+.+.. 
T Consensus        74 ~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~~~-  121 (193)
T cd04118          74 AKAAIVCYDLTDSSSF-ERAKFWVKELQNLE------------------------------EHCKIYLCGTKSDLIEQD-  121 (193)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHhcC------------------------------CCCCEEEEEEcccccccc-
Confidence            9999999999999998 77888888665421                              158999999999985321 


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      ...+.+...++.+++..++++++++||+++.|++++++.|.+.+..
T Consensus       122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             cccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            1234455567888899999999999999999999999999988743

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.84  E-value=7.6e-21  Score=231.03  Aligned_cols=271  Identities=13%  Similarity=0.075  Sum_probs=159.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccc-cceEEEEEEcCCCcchhhHHh------hh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTV-MKDICHLWELGSGTSRLEVAS------LF  103 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~-~k~~l~IwDlpG~~~~~~Li~------~~  103 (890)
                      +..+|+++|+||||||||+|+|++..   ++. ++++++    ++.+... .+.++++|||||.+++.....      ..
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~-pGvTve----~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i   76 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW-AGVTVE----RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI   76 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCC-CCceEe----eEEEEEEcCceEEEEEECCCccccccccccccHHHHH
Confidence            35789999999999999999999853   344 666766    3333222 233799999999988743211      11


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                      ....+....+|++|+|+|.++.++   ++. |..++.+                                .++|+++|+|
T Consensus        77 ~~~~l~~~~aD~vI~VvDat~ler---~l~-l~~ql~e--------------------------------~giPvIvVlN  120 (772)
T PRK09554         77 ACHYILSGDADLLINVVDASNLER---NLY-LTLQLLE--------------------------------LGIPCIVALN  120 (772)
T ss_pred             HHHHHhccCCCEEEEEecCCcchh---hHH-HHHHHHH--------------------------------cCCCEEEEEE
Confidence            000011124899999999998765   343 2222221                                3689999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCC-Cccc
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFG-TDSV  262 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G-~Ds~  262 (890)
                      |+|+.      ++.....+.+++++.+|++++++||+++.|++++++.+....-..   .....+      .|.. .+.+
T Consensus       121 K~Dl~------~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~~~~---~~~~~~------yp~~le~~I  185 (772)
T PRK09554        121 MLDIA------EKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQANE---NVELVH------YPQPLLNEA  185 (772)
T ss_pred             chhhh------hccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhhhcc---CCcccC------CCHHHHHHH
Confidence            99985      233445678889999999999999999999999999998764110   000000      1100 1112


Q ss_pred             cccccCCCCCCC-CccccccccccccchhHHHhh----cccccchhhccCChhhhHHHHHHHHh--HHHhhccceeccCC
Q psy11649        263 ASIEGTTHGKDA-SLESGGRGFNRSRGMKFEKKR----GWIEGTVTARNLEPNKKRIAVQCLRY--LAHVNGASLLFHSS  335 (890)
Q Consensus       263 ~~I~~pl~r~~~-~~~~~~~~~~~~~~~~f~~~~----~w~~~~~~~~~~~~~~~~~~e~~~ry--~~~~~~~~~~~~~~  335 (890)
                      +++...+....+ ...++.+....+.+.......    ..+++...........-....+-.||  |..+++.++.....
T Consensus       186 ~~l~~~L~e~iae~~~RwLAiKlLEgD~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~~~  265 (772)
T PRK09554        186 DSLAKVMPSDIPLQQRRWLGLQMLEGDIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTLTA  265 (772)
T ss_pred             HHHHHHhhhhhccccchHHHHHHhcCchHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            222211100000 112232323333332111100    00111111100000111233455677  99999999876555


Q ss_pred             CCCChhhhhhhhhhccccccccccc
Q psy11649        336 LDPGLVKRTRDILNHYAFSSHLASA  360 (890)
Q Consensus       336 ~~~~~~~~~d~~l~h~~~~~~~~~~  360 (890)
                      ...++++|+|+|++||+||--.|-.
T Consensus       266 ~~~~~s~~iD~i~~~~~~G~pifl~  290 (772)
T PRK09554        266 EPSRLTTALDKIILNRWLGLPIFLF  290 (772)
T ss_pred             CCCCHHHHhHHHHhcchhHHHHHHH
Confidence            6778999999999999999855433

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.84  E-value=7.7e-20  Score=182.98  Aligned_cols=161  Identities=19%  Similarity=0.286  Sum_probs=123.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh-hHHhhhhccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL-EVASLFSSFSLTAQ  111 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~-~Li~~~r~~~~~~~  111 (890)
                      .+||+++|++|||||||+++|+++.  ..+.++++.+|....... ......++|||++|++++. .+...+    ++  
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~----~~--   74 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSMVQHY----YR--   74 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhhHHHh----hc--
Confidence            4799999999999999999999864  356678877754322221 1223489999999998875 455555    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++.++ +.+..|++.+.....                            ...+|+++|+||+|+..  
T Consensus        75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~iiv~nK~Dl~~--  123 (170)
T cd04115          75 NVHAVVFVYDVTNMASF-HSLPSWIEECEQHSL----------------------------PNEVPRILVGNKCDLRE--  123 (170)
T ss_pred             CCCEEEEEEECCCHHHH-HhHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccchh--
Confidence            58999999999999998 888899987765421                            13689999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccC---CCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLD---PGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~---~~nId~Lk~~I~~~l  236 (890)
                         .+.+......+++..+++++++|||++   +.|+++++..+.+.+
T Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         124 ---QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             ---hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence               455566778889999999999999999   788888877766543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.84  E-value=6.5e-20  Score=185.89  Aligned_cols=164  Identities=18%  Similarity=0.235  Sum_probs=125.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++.  ..+.++++.+|.. ...........++||||+|++++..+...+    ++  ++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~a   73 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLS----YP--DV   73 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHh----CC--CC
Confidence            489999999999999999999864  3566777766532 222221223479999999999888877766    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      |++|+|||++++.+| +++. .|+..+....                              .++|+++||||+|+.....
T Consensus        74 d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~~~~  122 (187)
T cd04132          74 DVLLICYAVDNPTSL-DNVEDKWFPEVNHFC------------------------------PGTPIMLVGLKTDLRKDKN  122 (187)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEeChhhhhCcc
Confidence            999999999999998 6664 5877554321                              2589999999999853211


Q ss_pred             cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       ..+.+...++++++..+++ .+++|||++|.|++++++.+...+..
T Consensus       123 -~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         123 -LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             -ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence             1234566788999999998 89999999999999999999888754

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.84  E-value=5.5e-20  Score=183.62  Aligned_cols=160  Identities=19%  Similarity=0.247  Sum_probs=121.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      |+|+|++|||||||+++|+++.  ..+.++++..|.  ...........+++|||+|++.+..+...+    ++  ++|+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~d~   72 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS--ADVEVDGKPVELGLWDTAGQEDYDRLRPLS----YP--DTDV   72 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee--EEEEECCEEEEEEEEECCCCcccchhchhh----cC--CCCE
Confidence            6899999999999999999864  355667664443  222212222379999999999888777666    22  5999


Q ss_pred             EEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC--
Q psy11649        116 LVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE--  192 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d--  192 (890)
                      +|+|||++++++| +++ ..|+..+.+..                              .++|++|||||+|+..+..  
T Consensus        73 ~ilv~d~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~~~~~~  121 (174)
T smart00174       73 FLICFSVDSPASF-ENVKEKWYPEVKHFC------------------------------PNTPIILVGTKLDLREDKSTL  121 (174)
T ss_pred             EEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEecChhhhhChhhh
Confidence            9999999999999 666 46888765421                              2589999999999853210  


Q ss_pred             -----cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 -----PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 -----~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           ...+.+..+++.++++.+|+ .+++|||+++.|++++++.+...+
T Consensus       122 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      122 RELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             hhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence                 11233566778899999997 899999999999999999887765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04142 RRP22 RRP22 subfamily

Probab=99.84  E-value=5.2e-20  Score=190.54  Aligned_cols=168  Identities=15%  Similarity=0.074  Sum_probs=119.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHh-h---hhccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVAS-L---FSSFSLT  109 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~-~---~r~~~~~  109 (890)
                      +||+|+|++|||||||+++|+++.  ..+.||++.++.. ...........++||||||...+..... .   .+...++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~   79 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYR-PAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR   79 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccce-eEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence            489999999999999999999864  3567888755321 1111112223789999999765421111 0   0111133


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++++| +.+..|.+.+.+...                          ....++|++|||||+|+..
T Consensus        80 --~ad~iilv~D~~~~~S~-~~~~~~~~~i~~~~~--------------------------~~~~~~piiivgNK~Dl~~  130 (198)
T cd04142          80 --NSRAFILVYDICSPDSF-HYVKLLRQQILETRP--------------------------AGNKEPPIVVVGNKRDQQR  130 (198)
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcc--------------------------cCCCCCCEEEEEECccccc
Confidence              69999999999999998 788888877665431                          0123689999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           .+....+.++.++. .+++++++|||++|.|++++++.+...++.
T Consensus       131 -----~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~  175 (198)
T cd04142         131 -----HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT  175 (198)
T ss_pred             -----cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence                 34444556667654 568999999999999999999988887753

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04177 RSR1 RSR1 subgroup

Probab=99.84  E-value=1.1e-19  Score=181.21  Aligned_cols=160  Identities=19%  Similarity=0.252  Sum_probs=124.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+++|++|||||||+++|+++.  ..+.++++..|  .+..........+++||+||+.++..+...+    ++  +
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   72 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY--RKQVEIDGRQCDLEILDTAGTEQFTAMRELY----IK--S   72 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE--EEEEEECCEEEEEEEEeCCCcccchhhhHHH----Hh--h
Confidence            4789999999999999999999864  35667776443  2222222222489999999999998888887    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||+++++++ +.+..|...+.+...                            ..++|+++|+||+|+..   
T Consensus        73 ~~~~vlv~~~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piiiv~nK~D~~~---  120 (168)
T cd04177          73 GQGFLLVYSVTSEASL-NELGELREQVLRIKD----------------------------SDNVPMVLVGNKADLED---  120 (168)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC----------------------------CCCCCEEEEEEChhccc---
Confidence            8999999999999998 788888887765321                            13689999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .+....++...++..++ ++++++||+++.|++++++.+...+
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         121 --DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             --cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence              44455666778888888 7899999999999999988887654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04123 Rab21 Rab21 subfamily

Probab=99.83  E-value=1.9e-19  Score=176.01  Aligned_cols=159  Identities=15%  Similarity=0.235  Sum_probs=122.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|.+|||||||+++|++...  .+.++++.++........ .....+++||++|+..+..+...+    ++  ++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~----~~--~~   73 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-GKRIDLAIWDTAGQERYHALGPIY----YR--DA   73 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-CEEEEEEEEECCchHHHHHhhHHH----hc--cC
Confidence            5899999999999999999998643  344555545432222211 222379999999998888877776    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|+|++++.++ +.+..|++.+.....                             .++|+++|+||+|+..    
T Consensus        74 ~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piiiv~nK~D~~~----  119 (162)
T cd04123          74 DGAILVYDITDADSF-QKVKKWIKELKQMRG-----------------------------NNISLVIVGNKIDLER----  119 (162)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc----
Confidence            999999999999997 778888877655321                             1689999999999852    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       .++...+.++++++.+++.++++|++++.|++++++.+.+.+
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         120 -QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             -ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence             344445677788888999999999999999999999987654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN03108 Rab family protein; Provisional

Probab=99.83  E-value=1.8e-19  Score=187.78  Aligned_cols=163  Identities=17%  Similarity=0.236  Sum_probs=128.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+|+|++|||||||+++|++..  ..+.+|++.+|........ .....+++||++|++.+..+...+    ++  
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-~~~i~l~l~Dt~G~~~~~~~~~~~----~~--   77 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-NKPIKLQIWDTAGQESFRSITRSY----YR--   77 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHH----hc--
Confidence            35899999999999999999999863  4556788877643322221 122378999999999888777666    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++.++ +.+..|+..+.+..                             ...+|+++|+||+|+..  
T Consensus        78 ~ad~~vlv~D~~~~~s~-~~l~~~~~~~~~~~-----------------------------~~~~piiiv~nK~Dl~~--  125 (210)
T PLN03108         78 GAAGALLVYDITRRETF-NHLASWLEDARQHA-----------------------------NANMTIMLIGNKCDLAH--  125 (210)
T ss_pred             cCCEEEEEEECCcHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccCcc--
Confidence            49999999999999998 78888887654432                             12589999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         .+.+...+..++++.++++++++||+++.|++++++.+...++.
T Consensus       126 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~  169 (210)
T PLN03108        126 ---RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYK  169 (210)
T ss_pred             ---ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence               45566678889999999999999999999999998888877754

>cd01863 Rab18 Rab18 subfamily

Probab=99.83  E-value=2e-19  Score=177.09  Aligned_cols=158  Identities=19%  Similarity=0.268  Sum_probs=124.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|++..  ..+.++.+.+|....... ......+++||+||+..+..+...+    ++  ++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~   73 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTLTSSY----YR--GA   73 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhhhHHH----hC--CC
Confidence            489999999999999999999864  346788887764322221 1222479999999998887777666    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++++|+|++++.++ +.+..|++.+.++..                            ..++|+++||||+|+.     
T Consensus        74 d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~~~~iv~nK~D~~-----  119 (161)
T cd01863          74 QGVILVYDVTRRDTF-TNLETWLNELETYST----------------------------NNDIVKMLVGNKIDKE-----  119 (161)
T ss_pred             CEEEEEEECCCHHHH-HhHHHHHHHHHHhCC----------------------------CCCCcEEEEEECCccc-----
Confidence            999999999999998 788889887765432                            2368999999999995     


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                       .+.....+..+++..++++++++||++|.|++++.+.+...
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         120 -NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             -ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence             33344566788888899999999999999999998887654

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.83  E-value=2.3e-19  Score=176.76  Aligned_cols=160  Identities=18%  Similarity=0.287  Sum_probs=124.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+++|++|||||||+++|+++..  .+.++.+.+|....... ......++|||+||++++..+...+    ++  +
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~~~~~----~~--~   73 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSLAPMY----YR--G   73 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHHHHHH----hc--c
Confidence            47999999999999999999999743  35678776553322221 2223389999999998888777766    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|+|+++++++ +.+..|+..+....                             ...+|+++|+||+|+..   
T Consensus        74 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iivv~nK~D~~~---  120 (163)
T cd01860          74 AAAAIVVYDITSEESF-EKAKSWVKELQRNA-----------------------------SPNIIIALVGNKADLES---  120 (163)
T ss_pred             CCEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCeEEEEEECccccc---
Confidence            9999999999999998 78888888765532                             13689999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .+......+..++..+++.++++||++|.|++.+++.|...+
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         121 --KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             --cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence              344445567788888899999999999999999999887764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01862 Rab7 Rab7 subfamily

Probab=99.83  E-value=2.9e-19  Score=177.30  Aligned_cols=165  Identities=16%  Similarity=0.290  Sum_probs=125.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|++..  ..+.++++.+|....... ......+++||+||+..+..+...+    ++  ++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~----~~--~~   73 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSLGVAF----YR--GA   73 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhHHHHH----hc--CC
Confidence            489999999999999999999864  344567776654322221 1123478999999998888877776    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|||++++.++ +++..|.+.+......                         .+..++|+++|+||+|+..    
T Consensus        74 d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~Dl~~----  123 (172)
T cd01862          74 DCCVLVYDVTNPKSF-ESLDSWRDEFLIQASP-------------------------SDPENFPFVVLGNKIDLEE----  123 (172)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhcCc-------------------------cCCCCceEEEEEECccccc----
Confidence            999999999999987 7788888765543321                         2233689999999999952    


Q ss_pred             chhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        194 NKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       .+....+..+.++...+ ..++++||++|.|++++++.|...++.
T Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         124 -KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE  168 (172)
T ss_pred             -ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence             23334556777888887 789999999999999999999888754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01892 Miro2 Miro2 subfamily

Probab=99.83  E-value=1.4e-19  Score=181.91  Aligned_cols=161  Identities=19%  Similarity=0.141  Sum_probs=122.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .+.+||+++|++|||||||+++|+++.   .++.||++.+|........ .....+.+||++|++.+..+...+    ++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~----~~   76 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-GQEKYLILREVGEDEVAILLNDAE----LA   76 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-CeEEEEEEEecCCcccccccchhh----hh
Confidence            357899999999999999999999974   4588999887653222221 222378999999998887776665    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++++|+|++++.++ +.+..|++.+..                               ..++|+++|+||+|+..
T Consensus        77 --~~d~~llv~d~~~~~s~-~~~~~~~~~~~~-------------------------------~~~~p~iiv~NK~Dl~~  122 (169)
T cd01892          77 --ACDVACLVYDSSDPKSF-SYCAEVYKKYFM-------------------------------LGEIPCLFVAAKADLDE  122 (169)
T ss_pred             --cCCEEEEEEeCCCHHHH-HHHHHHHHHhcc-------------------------------CCCCeEEEEEEcccccc
Confidence              59999999999999887 677777753211                               12589999999999852


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           .+........++++.+++. ++++||+++.|++++++.|...+.
T Consensus       123 -----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         123 -----QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             -----cccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence                 2333334566788888874 799999999999999999887763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03118 Rab family protein; Provisional

Probab=99.83  E-value=3.9e-19  Score=184.86  Aligned_cols=168  Identities=17%  Similarity=0.223  Sum_probs=128.4

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .....+||+|+|++|||||||+++|+++. ..+.++++.++....... ......+.||||||++++..+...+    ++
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~----~~   84 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTLTSSY----YR   84 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHH----Hh
Confidence            34457899999999999999999999864 366788887754333321 1122378999999999998888777    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHH-HHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAET-FLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~-wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        +++++|+|||++++.+| +.+.. |...+....                            ...++|+++|+||+|+.
T Consensus        85 --~~d~~vlv~D~~~~~sf-~~~~~~~~~~~~~~~----------------------------~~~~~~~ilv~NK~Dl~  133 (211)
T PLN03118         85 --NAQGIILVYDVTRRETF-TNLSDVWGKEVELYS----------------------------TNQDCVKMLVGNKVDRE  133 (211)
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhc----------------------------CCCCCCEEEEEECcccc
Confidence              59999999999999998 66654 665443321                            11257999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                      .     .+....++...++..+++.+++|||+++.|++++++.|...++..
T Consensus       134 ~-----~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        134 S-----ERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             c-----cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            2     334445667788888999999999999999999999999888653

>KOG0097|consensus

Probab=99.82  E-value=9.4e-20  Score=174.07  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=133.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccc-cceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTV-MKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~-~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      +.-+|.+++|+-|||||+|+++|+++.+  .-..|+|++|-  ++..... .+.+++|||++|+++|+.+...|    |+
T Consensus         9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefg--triievsgqkiklqiwdtagqerfravtrsy----yr   82 (215)
T KOG0097|consen    9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG--TRIIEVSGQKIKLQIWDTAGQERFRAVTRSY----YR   82 (215)
T ss_pred             hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecc--eeEEEecCcEEEEEEeecccHHHHHHHHHHH----hc
Confidence            4568999999999999999999999753  33478998864  4443332 34499999999999999999999    44


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++.+.++|||++...++ +.|..|+...+.                             ..+.+..++++|||.|+. 
T Consensus        83 --gaagalmvyditrrsty-nhlsswl~dar~-----------------------------ltnpnt~i~lignkadle-  129 (215)
T KOG0097|consen   83 --GAAGALMVYDITRRSTY-NHLSSWLTDARN-----------------------------LTNPNTVIFLIGNKADLE-  129 (215)
T ss_pred             --cccceeEEEEehhhhhh-hhHHHHHhhhhc-----------------------------cCCCceEEEEecchhhhh-
Confidence              69999999999999998 999999975443                             444567899999999995 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                          .+|++..+++.+|+..+|..++++|||+|.|++..+-.-...+|
T Consensus       130 ----~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akkiy  173 (215)
T KOG0097|consen  130 ----SQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKIY  173 (215)
T ss_pred             ----hcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHHH
Confidence                48999999999999999999999999999999987544444443

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.82  E-value=1.7e-19  Score=179.04  Aligned_cols=159  Identities=23%  Similarity=0.262  Sum_probs=118.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhccccccccC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQSG  113 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~a  113 (890)
                      ||+++|++|||||||+++|+++.  ..+.++++..|.  ...........+++||+||+.++ ......+    ++  ++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~--~~   72 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYS--RQVTIDGEQVSLEILDTAGQQQADTEQLERS----IR--WA   72 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhce--EEEEECCEEEEEEEEECCCCcccccchHHHH----HH--hC
Confidence            58999999999999999998753  356677654442  22211122237999999998752 2333333    22  49


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|||++++++| +.+..|+..+.+...                           ...++|+++||||+|+.     
T Consensus        73 d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~---------------------------~~~~~piilv~nK~Dl~-----  119 (165)
T cd04146          73 DGFVLVYSITDRSSF-DEISQLKQLIREIKK---------------------------RDREIPVILVGNKADLL-----  119 (165)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHHhc---------------------------CCCCCCEEEEEECCchH-----
Confidence            999999999999998 888999887765321                           02358999999999984     


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCC-CCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDP-GLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~-~nId~Lk~~I~~~l  236 (890)
                      +.+.+..+++.+++..+++++++|||+++ .|++++++.+...+
T Consensus       120 ~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         120 HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            24555667788899999999999999999 49999998887654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.82  E-value=2.7e-19  Score=178.39  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=113.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+.+|+.+..  .+.| ++..|. ..... ......++|||++|++..     .+    ++  ++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-~~~~~~-~~i~~-~~~~~~l~i~D~~g~~~~-----~~----~~--~~   66 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESP-EGGRFK-KEVLV-DGQSHLLLIRDEGGAPDA-----QF----AS--WV   66 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCC-CccceE-EEEEE-CCEEEEEEEEECCCCCch-----hH----Hh--cC
Confidence            4799999999999999999987632  3333 344542 22221 112237999999999642     22    11  48


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|||++++.|| +++..|+..+....                            +...+|+++||||+|+..   .
T Consensus        67 ~~~ilv~d~~~~~sf-~~~~~~~~~i~~~~----------------------------~~~~~piilvgnK~Dl~~---~  114 (158)
T cd04103          67 DAVIFVFSLENEASF-QTVYNLYHQLSSYR----------------------------NISEIPLILVGTQDAISE---S  114 (158)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEeeHHHhhh---c
Confidence            999999999999999 88888988776532                            112589999999999841   1


Q ss_pred             chhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      ..+.+...+.+++++.. ++.+++|||++|.||+++++.+...
T Consensus       115 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            24566777888999876 4899999999999999998877643

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.82  E-value=2.4e-19  Score=179.90  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=119.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|.++.  .++.+|....|.  ...........+++||++|+.++..+...+    ++  ++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~a   72 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFS--VVVLVDGKPVRLQLCDTAGQDEFDKLRPLC----YP--DT   72 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeee--EEEEECCEEEEEEEEECCCChhhccccccc----cC--CC
Confidence            489999999999999999998753  456666543322  112111223488999999998887776666    22  69


Q ss_pred             cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +++|+|||++++++| +.+ ..|+..+....                              .++|+++||||+|+.....
T Consensus        73 ~~~i~v~d~~~~~sf-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~~~~  121 (173)
T cd04130          73 DVFLLCFSVVNPSSF-QNISEKWIPEIRKHN------------------------------PKAPIILVGTQADLRTDVN  121 (173)
T ss_pred             cEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEeeChhhccChh
Confidence            999999999999998 555 46887665321                              1489999999999853211


Q ss_pred             -------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHH
Q psy11649        193 -------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       193 -------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~  233 (890)
                             ..++.+..++++.+++.+++ .+++|||++|.|++++++.+.
T Consensus       122 ~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         122 VLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             HHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence                   12456677889999999998 899999999999999976653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04149 Arf6 Arf6 subfamily

Probab=99.82  E-value=2.5e-19  Score=180.00  Aligned_cols=153  Identities=14%  Similarity=0.166  Sum_probs=110.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +.+||+++|++|||||||+++|+.+. ..+.||++.++.  ....   .+.++++||++|++++..+...+    ++  +
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~~--~   76 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY---KNVKFNVWDVGGQDKIRPLWRHY----YT--G   76 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--c
Confidence            46899999999999999999998643 356788887653  2222   34589999999999988887777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++.++ +++..|+..+....                            ...++|++||+||+|+...  
T Consensus        77 a~~ii~v~D~t~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~--  125 (168)
T cd04149          77 TQGLIFVVDSADRDRI-DEARQELHRIINDR----------------------------EMRDALLLVFANKQDLPDA--  125 (168)
T ss_pred             CCEEEEEEeCCchhhH-HHHHHHHHHHhcCH----------------------------hhcCCcEEEEEECcCCccC--
Confidence            9999999999999887 55555554332110                            0125899999999998421  


Q ss_pred             cchhhhhHHHHHHHHH-----HcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAH-----VNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~-----~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                           ...++++.++.     ..++.+++|||++|.|++++++.|.
T Consensus       126 -----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         126 -----MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             -----CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence                 12233444332     1234689999999999999987764

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.82  E-value=3.6e-19  Score=190.61  Aligned_cols=167  Identities=15%  Similarity=0.172  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++.  ..+.||++ ++...... .......++||||+|++.+..+...+    +.  ++
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~-i~~~~~~l~I~Dt~G~~~~~~~~~~~----~~--~a   72 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYS-IRGEVYQLDILDTSGNHPFPAMRRLS----IL--TG   72 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEE-ECCEEEEEEEEECCCChhhhHHHHHH----hc--cC
Confidence            489999999999999999998764  35667776 43221111 11222489999999998887776665    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|||++++++| +++..|++.+.+....+..                    ......++|++||+||+|+..    
T Consensus        73 d~iIlVfdv~~~~Sf-~~i~~~~~~I~~~k~~~~~--------------------~~~~~~~~piIivgNK~Dl~~----  127 (247)
T cd04143          73 DVFILVFSLDNRESF-EEVCRLREQILETKSCLKN--------------------KTKENVKIPMVICGNKADRDF----  127 (247)
T ss_pred             CEEEEEEeCCCHHHH-HHHHHHHHHHHHhhccccc--------------------ccccCCCCcEEEEEECccchh----
Confidence            999999999999998 8888998887654211000                    001223689999999999952    


Q ss_pred             chhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       .+.+...++.+++.. .++.+++|||+++.|++++++.|...+
T Consensus       128 -~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         128 -PREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             -ccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence             344455666666653 468899999999999999999998865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04135 Tc10 TC10 subfamily

Probab=99.82  E-value=3.9e-19  Score=177.44  Aligned_cols=162  Identities=17%  Similarity=0.201  Sum_probs=119.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|+++..  .+.++++..|..  ..........+++||++|+..+..+...+    ++  ++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~   72 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV--SVTVGGKQYLLGLYDTAGQEDYDRLRPLS----YP--MT   72 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE--EEEECCEEEEEEEEeCCCccccccccccc----CC--CC
Confidence            4899999999999999999998643  455666533322  11111222378999999998887766655    22  58


Q ss_pred             cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +++|+|||++++.+| +.+ ..|.+.++..                              ..++|+++||||+|+..+..
T Consensus        73 ~~~ilv~~~~~~~s~-~~~~~~~~~~l~~~------------------------------~~~~piivv~nK~Dl~~~~~  121 (174)
T cd04135          73 DVFLICFSVVNPASF-QNVKEEWVPELKEY------------------------------APNVPYLLVGTQIDLRDDPK  121 (174)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhh------------------------------CCCCCEEEEeEchhhhcChh
Confidence            999999999999998 555 4687766542                              12589999999999853211


Q ss_pred             c-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 P-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .       ..+.+...++..+++.+|+ .+++|||+++.|++++++.+...+
T Consensus       122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         122 TLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            0       1235566788899999996 699999999999999988876654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.81  E-value=7.3e-19  Score=172.53  Aligned_cols=159  Identities=21%  Similarity=0.280  Sum_probs=122.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|++|||||||+++|++..  ..+.++++..|.  +..........+++||+||+..+..+...+    ++  ++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~--~~   72 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEDVQLNILDTAGQEDYAAIRDNY----HR--SG   72 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE--EEEEECCEEEEEEEEECCChhhhhHHHHHH----hh--cC
Confidence            489999999999999999999863  355666664432  222222223479999999999888887777    22  48


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|+|++++.++ +++..|...+.....                            ...+|+++|+||+|+..    
T Consensus        73 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piiiv~NK~D~~~----  119 (164)
T cd04139          73 EGFLLVFSITDMESF-TATAEFREQILRVKD----------------------------DDNVPLLLVGNKCDLED----  119 (164)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEEcccccc----
Confidence            999999999999998 778888776654321                            23699999999999853    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       .+.......+.++..++++++++||+++.|++++++.+.+.+
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (164)
T cd04139         120 -KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI  161 (164)
T ss_pred             -ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence             233345566778888899999999999999999999988765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04148 RGK RGK subfamily

Probab=99.81  E-value=6e-19  Score=185.55  Aligned_cols=159  Identities=17%  Similarity=0.116  Sum_probs=119.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ  111 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~  111 (890)
                      +||+++|++|||||||+++|+++.   ..+.++.+.++......... ....+++||++|++.  .+...+ +   +   
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~--~~~~~~~~---~---   71 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM--WTEDSCMQ---Y---   71 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch--HHHhHHhh---c---
Confidence            489999999999999999998653   35556665454332222221 234799999999972  222222 2   1   


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++.+| +.+..|+..+.+..                            ...++|+++|+||+|+..  
T Consensus        72 ~ad~iilV~d~td~~S~-~~~~~~~~~l~~~~----------------------------~~~~~piilV~NK~Dl~~--  120 (221)
T cd04148          72 QGDAFVVVYSVTDRSSF-ERASELRIQLRRNR----------------------------QLEDRPIILVGNKSDLAR--  120 (221)
T ss_pred             CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEEChhccc--
Confidence            39999999999999998 77888888765531                            113689999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                         .+.+..++.++++..+++.+++|||+++.|++++++.|...+.
T Consensus       121 ---~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         121 ---SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             ---cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence               4555566778889889999999999999999999999988763

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.81  E-value=1e-17  Score=195.08  Aligned_cols=154  Identities=16%  Similarity=0.109  Sum_probs=99.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhh---hccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLF---SSFS  107 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~---r~~~  107 (890)
                      ..+|+|||.+|||||||+|+|+++.   ....++++.+..+.....   .+..+.+|||||.+.. ..+...+   ....
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW---NGRRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE---CCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4689999999999999999999853   234566665543322221   2236899999997631 1111111   0111


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      ++  ++|++|+|+|+++..++  ....|.+.++.                                .++|+++|+||+|+
T Consensus       115 ~~--~aD~il~VvD~~~~~s~--~~~~i~~~l~~--------------------------------~~~piilV~NK~Dl  158 (472)
T PRK03003        115 MR--TADAVLFVVDATVGATA--TDEAVARVLRR--------------------------------SGKPVILAANKVDD  158 (472)
T ss_pred             HH--hCCEEEEEEECCCCCCH--HHHHHHHHHHH--------------------------------cCCCEEEEEECccC
Confidence            22  59999999999998775  23344443321                                25899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ...     .   ......++..++. .++|||++|.|++++++.|...+
T Consensus       159 ~~~-----~---~~~~~~~~~g~~~-~~~iSA~~g~gi~eL~~~i~~~l  198 (472)
T PRK03003        159 ERG-----E---ADAAALWSLGLGE-PHPVSALHGRGVGDLLDAVLAAL  198 (472)
T ss_pred             Ccc-----c---hhhHHHHhcCCCC-eEEEEcCCCCCcHHHHHHHHhhc
Confidence            521     0   1111222333333 57999999999999999987765

>cd04158 ARD1 ARD1 subfamily

Probab=99.80  E-value=7.5e-19  Score=176.06  Aligned_cols=155  Identities=16%  Similarity=0.200  Sum_probs=114.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      ||+++|++|||||||+++|++... .+.||++.++.  ....   .+..+++||+||+.++..++..+    ++  ++|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~~~~~~~~~~----~~--~ad~   69 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY---KNLKFTIWDVGGKHKLRPLWKHY----YL--NTQA   69 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE---CCEEEEEEECCCChhcchHHHHH----hc--cCCE
Confidence            589999999999999999998633 56788876642  2222   23489999999998888777766    22  5999


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +|+|+|++++.++ +.+..|+..+.+..                            ...+.|++||+||+|+..      
T Consensus        70 ii~V~D~s~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~------  114 (169)
T cd04158          70 VVFVVDSSHRDRV-SEAHSELAKLLTEK----------------------------ELRDALLLIFANKQDVAG------  114 (169)
T ss_pred             EEEEEeCCcHHHH-HHHHHHHHHHhcCh----------------------------hhCCCCEEEEEeCcCccc------
Confidence            9999999999998 66777766553211                            112479999999999842      


Q ss_pred             hhhhHHHHHHHHHHcC------CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        196 KRIAVQCLRYLAHVNG------ASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       196 r~~i~~~lr~la~~~G------a~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       ....+++++++...+      ..+++|||++|.|++++++.|.+.+.+
T Consensus       115 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         115 -ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             -CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence             223344555543221      268899999999999999999887643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00154 Rab Rab family

Probab=99.80  E-value=1.5e-18  Score=167.72  Aligned_cols=156  Identities=19%  Similarity=0.327  Sum_probs=121.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|.+|||||||+++|++...  .+.+|++.++........ .....+.+||+||+..+..+...+    ++  ++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~   73 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQERFRSITPSY----YR--GA   73 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChHHHHHHHHHH----hc--CC
Confidence            4799999999999999999998643  345777776543222221 122378999999998888777766    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|+|+++++++ +.+..|+..+.....                             .++|+++|+||+|+..    
T Consensus        74 d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~-----------------------------~~~p~ivv~nK~D~~~----  119 (159)
T cd00154          74 HGAILVYDITNRESF-ENLDKWLKELKEYAP-----------------------------ENIPIILVGNKIDLED----  119 (159)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEEcccccc----
Confidence            999999999998887 788888876655321                             2589999999999851    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                       ......+++++++..++++++++||+++.|++++++.|.
T Consensus       120 -~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         120 -QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             -cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence             344456778888888999999999999999999988774

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.80  E-value=1.1e-18  Score=174.41  Aligned_cols=162  Identities=19%  Similarity=0.274  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|.++.  ..+.||++..|.  ...........+.+|||+|++.+..+...+    +.  ++
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~~   73 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV--ADIEVDGKQVELALWDTAGQEDYDRLRPLS----YP--DT   73 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE--EEEEECCEEEEEEEEeCCCchhhhhccccc----cC--CC
Confidence            589999999999999999999864  456777775542  222111222378999999998876665444    22  58


Q ss_pred             cEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      |++++|||++++++| +++ ..|...++...                              .++|+++|+||+|+.....
T Consensus        74 d~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~~~~  122 (175)
T cd01870          74 DVILMCFSIDSPDSL-ENIPEKWTPEVKHFC------------------------------PNVPIILVGNKKDLRNDEH  122 (175)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhhC------------------------------CCCCEEEEeeChhcccChh
Confidence            999999999999998 555 45877654421                              1589999999999853211


Q ss_pred             c-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 P-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .       ..+.+.....+++++.++. .+++|||++|.|++++++.|...+
T Consensus       123 ~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         123 TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            0       1123445678888988875 799999999999999999887653

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04114 Rab30 Rab30 subfamily

Probab=99.80  E-value=2.3e-18  Score=170.92  Aligned_cols=161  Identities=20%  Similarity=0.232  Sum_probs=122.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ...+|+++|++|||||||+++|+++.  ..+.++++.++........ .....+++||++|+..+......+    ++  
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~----~~--   78 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQERFRSITQSY----YR--   78 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----hc--
Confidence            46899999999999999999999753  3455777766543222211 112378999999998887776666    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|||++++.++ +.+..|+..+.....                             .++|+++|+||+|+..  
T Consensus        79 ~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~-----------------------------~~~~~i~v~NK~D~~~--  126 (169)
T cd04114          79 SANALILTYDITCEESF-RCLPEWLREIEQYAN-----------------------------NKVITILVGNKIDLAE--  126 (169)
T ss_pred             CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc--
Confidence            59999999999999988 788889887655322                             2589999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .++......+.++......++++||++|.|++++++.|...+
T Consensus       127 ---~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         127 ---RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             ---ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence               444445566777777788999999999999999999887653

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.80  E-value=1.1e-18  Score=176.38  Aligned_cols=156  Identities=13%  Similarity=0.165  Sum_probs=111.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ..+||+++|++|||||||+++|..+ ...+.||++.++.  ....   ....+++||++|++++..++..+    ++  +
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~l~l~D~~G~~~~~~~~~~~----~~--~   80 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE--TVTY---KNISFTVWDVGGQDKIRPLWRHY----YT--N   80 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE--EEEE---CCEEEEEEECCCChhhHHHHHHH----hC--C
Confidence            4689999999999999999999754 3466788887653  2222   23489999999999998888877    23  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|+|++++.++ +....|+..+....                            ...++|++||+||+|+.+..+
T Consensus        81 ad~ii~v~D~t~~~s~-~~~~~~l~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~~~  131 (175)
T smart00177       81 TQGLIFVVDSNDRDRI-DEAREELHRMLNED----------------------------ELRDAVILVFANKQDLPDAMK  131 (175)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHhhCH----------------------------hhcCCcEEEEEeCcCcccCCC
Confidence            9999999999999887 55555555432210                            012589999999999853111


Q ss_pred             cchhhhhHHHHHHHH-----HHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLA-----HVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la-----~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                             ..++....     ....+.+++|||++|.|++++.++|...+
T Consensus       132 -------~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      132 -------AAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             -------HHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                   11111111     11234577899999999999999887654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.80  E-value=1.8e-18  Score=176.07  Aligned_cols=161  Identities=18%  Similarity=0.214  Sum_probs=115.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .+||+++|++|||||||+++|+.+.. .+.||+|.++..............+++|||+|++++..++..+    ++  ++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~----~~--~~   76 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSY----TR--CT   76 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHH----hc--cC
Confidence            57999999999999999999988532 3457777654322222112233489999999999888888777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|+|++++.++ +.+..|+..+.+...                            ..++|++||+||+|+....  
T Consensus        77 d~ii~v~D~~~~~~~-~~~~~~~~~i~~~~~----------------------------~~~~p~iiv~NK~D~~~~~--  125 (183)
T cd04152          77 DGIVFVVDSVDVERM-EEAKTELHKITRFSE----------------------------NQGVPVLVLANKQDLPNAL--  125 (183)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHhhhh----------------------------cCCCcEEEEEECcCccccC--
Confidence            999999999999887 666777765554321                            1368999999999985311  


Q ss_pred             chhhhhHHHHHHHHH------HcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        194 NKKRIAVQCLRYLAH------VNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       194 e~r~~i~~~lr~la~------~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           ...++..++.      ..++.+++|||+++.|++++.+.|...+.
T Consensus       126 -----~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         126 -----SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             -----CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence                 1122333322      12356899999999999999999887764

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.79  E-value=1.7e-18  Score=172.07  Aligned_cols=152  Identities=15%  Similarity=0.176  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      +||+++|++|||||||+++|..+ ...+.||++.++.  ....   ....+++||++|+.++..++..+    ++  ++|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~ad   69 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ--NTQ   69 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--CCC
Confidence            48999999999999999999764 3356788886542  2222   24589999999999988888777    23  699


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|||++++.++ +.+..|+..+....                            ....+|++||+||+|+.+...  
T Consensus        70 ~~i~v~D~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~~~--  118 (159)
T cd04150          70 GLIFVVDSNDRERI-GEAREELQRMLNED----------------------------ELRDAVLLVFANKQDLPNAMS--  118 (159)
T ss_pred             EEEEEEeCCCHHHH-HHHHHHHHHHHhcH----------------------------HhcCCCEEEEEECCCCCCCCC--
Confidence            99999999999887 55555554332110                            012479999999999842111  


Q ss_pred             hhhhhHHHHHHHHH----HcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAH----VNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       195 ~r~~i~~~lr~la~----~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                          ..+....++.    ..++.+++|||++|.|++++++.|.
T Consensus       119 ----~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         119 ----AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             ----HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence                1111222221    2244678999999999999988774

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.79  E-value=3.3e-18  Score=177.98  Aligned_cols=182  Identities=16%  Similarity=0.209  Sum_probs=122.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEec----cccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGK----TVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~----~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      +||+++|+++||||||+++|+++.  ..+.+|+|.++........    ......++|||++|++++..+...+    |+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~----yr   76 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF----YN   76 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH----hC
Confidence            489999999999999999999864  4677899877644333211    1122389999999999999988888    33


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++|+|||+++++|| +++..|++.+.+.......         ......++ +........+|++|||||+|+.+
T Consensus        77 --~ad~iIlVyDvtn~~Sf-~~l~~W~~ei~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          77 --QVNGIILVHDLTNRKSS-QNLQRWSLEALNKDTFPTG---------LLVTNGDY-DSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             --cCCEEEEEEECcChHHH-HHHHHHHHHHHHhhccccc---------cccccccc-cccccCCCCceEEEEEECccchh
Confidence              59999999999999999 9999999988764321000         00000000 00011234699999999999853


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCC-------CHHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPG-------LVKRTRDILNHY  235 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~-------nId~Lk~~I~~~  235 (890)
                      .- ..+..........+|++.|++.++.+++++.       +-..|...+...
T Consensus       144 ~r-~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~  195 (202)
T cd04102         144 EK-ESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKV  195 (202)
T ss_pred             hc-ccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHH
Confidence            10 0011122234567899999999999987543       445555555444

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04154 Arl2 Arl2 subfamily

Probab=99.79  E-value=1.8e-18  Score=173.66  Aligned_cols=153  Identities=18%  Similarity=0.194  Sum_probs=111.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+.+|+++|++|||||||+++|+++.. .+.+|++..+  .....   ....+++||+||++.+..+...+    ++  +
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~---~~~~l~l~D~~G~~~~~~~~~~~----~~--~   81 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEY---EGYKLNIWDVGGQKTLRPYWRNY----FE--S   81 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEE---CCEEEEEEECCCCHHHHHHHHHH----hC--C
Confidence            468999999999999999999998633 4567777432  22221   13479999999999888777666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|++++.++ +.+..|+..+....                            ...++|++||+||+|+.+.  
T Consensus        82 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~p~iiv~nK~Dl~~~--  130 (173)
T cd04154          82 TDALIWVVDSSDRLRL-DDCKRELKELLQEE----------------------------RLAGATLLILANKQDLPGA--  130 (173)
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHhCh----------------------------hhcCCCEEEEEECcccccC--
Confidence            9999999999999887 66666665443211                            1126899999999998531  


Q ss_pred             cchhhhhHHHHHHHHH-----HcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAH-----VNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~-----~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                         .  ..+++..+..     ..++++++|||++|.|++++++++.
T Consensus       131 ---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         131 ---L--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             ---C--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence               1  2233444332     3467899999999999999988764

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.79  E-value=3.2e-19  Score=177.90  Aligned_cols=147  Identities=18%  Similarity=0.148  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhhhcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLFSSF  106 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~r~~  106 (890)
                      ++|+++|+||||||||+|+|++..   .++ |+++++........   ....+.++|+||.+++.      .+...+   
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~-pG~Tv~~~~g~~~~---~~~~~~lvDlPG~ysl~~~s~ee~v~~~~---   73 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNW-PGTTVEKKEGIFKL---GDQQVELVDLPGIYSLSSKSEEERVARDY---   73 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEES-TTSSSEEEEEEEEE---TTEEEEEEE----SSSSSSSHHHHHHHHH---
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCC-CCCCeeeeeEEEEe---cCceEEEEECCCcccCCCCCcHHHHHHHH---
Confidence            479999999999999999999963   455 88888854333332   22479999999988763      233333   


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                       +...++|++|.|+|.++.++   ++....+ +                                ..+++|+++|.||+|
T Consensus        74 -l~~~~~D~ii~VvDa~~l~r---~l~l~~q-l--------------------------------~e~g~P~vvvlN~~D  116 (156)
T PF02421_consen   74 -LLSEKPDLIIVVVDATNLER---NLYLTLQ-L--------------------------------LELGIPVVVVLNKMD  116 (156)
T ss_dssp             -HHHTSSSEEEEEEEGGGHHH---HHHHHHH-H--------------------------------HHTTSSEEEEEETHH
T ss_pred             -HhhcCCCEEEEECCCCCHHH---HHHHHHH-H--------------------------------HHcCCCEEEEEeCHH
Confidence             10114999999999998654   4433222 1                                124799999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL  232 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I  232 (890)
                      +.      .++.+..+.+.+++.+|++++++||+++.|+++|++.|
T Consensus       117 ~a------~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  117 EA------ERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             HH------HHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             HH------HHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            96      56677778899999999999999999999999998875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd00876 Ras Ras family

Probab=99.79  E-value=2.6e-18  Score=167.68  Aligned_cols=157  Identities=17%  Similarity=0.297  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      ||+++|++|||||||+++|++..  ..+.++.+ ++ +............+++||+||+..+..+...+    ++  +++
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~~   72 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DS-YRKTIVVDGETYTLDILDTAGQEEFSAMRDLY----IR--QGD   72 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-He-EEEEEEECCEEEEEEEEECCChHHHHHHHHHH----Hh--cCC
Confidence            68999999999999999999853  45556655 32 21212111122479999999998877777666    22  489


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++++|||+++++++ +.+..|...+.....                            ..++|+++|+||+|+..     
T Consensus        73 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ivv~nK~D~~~-----  118 (160)
T cd00876          73 GFILVYSITDRESF-EEIKGYREQILRVKD----------------------------DEDIPIVLVGNKCDLEN-----  118 (160)
T ss_pred             EEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECCcccc-----
Confidence            99999999999987 777777765554321                            13689999999999863     


Q ss_pred             hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      .+....+.++.++..++++++++|++++.|++++.+.|.+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         119 ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            34455677888899999999999999999999999888764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00157 Rho Rho (Ras homology) family

Probab=99.79  E-value=2.5e-18  Score=170.45  Aligned_cols=161  Identities=19%  Similarity=0.218  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+++|.+|||||||+++|++..  ..+.+++...+.  ...........+++||+||++.+..+...+    ++  .+
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~----~~--~~   72 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYS--ATVTVDGKQVNLGLWDTAGQEEYDRLRPLS----YP--NT   72 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeE--EEEEECCEEEEEEEEeCCCcccccccchhh----cC--CC
Confidence            489999999999999999999865  344455553332  222222223489999999998775555544    22  49


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++++|||++++.++......|+..+....                              .++|+++|+||+|+......
T Consensus        73 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------~~~p~ivv~nK~Dl~~~~~~  122 (171)
T cd00157          73 DVFLICFSVDSPSSFENVKTKWIPEIRHYC------------------------------PNVPIILVGTKIDLRDDENT  122 (171)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhC------------------------------CCCCEEEEEccHHhhhchhh
Confidence            999999999999998555566776554421                              15899999999998632111


Q ss_pred             c------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHH
Q psy11649        194 N------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       194 e------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      .      ...+..+...+++..+++ .++++||+++.|++++++.|..
T Consensus       123 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         123 LKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             hhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            0      012345677888888888 8999999999999999887754

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.79  E-value=2.7e-18  Score=174.88  Aligned_cols=152  Identities=15%  Similarity=0.203  Sum_probs=109.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      ++||+++|++|||||||+++|+.+. ..+.||++.++.  ....   ....+++||+||++++..++..+    ++  ++
T Consensus        17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~---~~~~~~i~D~~Gq~~~~~~~~~~----~~--~a   85 (181)
T PLN00223         17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ--NT   85 (181)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--cC
Confidence            5799999999999999999998643 356788886642  2222   23489999999999998888887    33  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|+|++++.++ +.+..|+..+.   ..                         ....++|++|||||+|+....  
T Consensus        86 ~~iI~V~D~s~~~s~-~~~~~~l~~~l---~~-------------------------~~~~~~piilv~NK~Dl~~~~--  134 (181)
T PLN00223         86 QGLIFVVDSNDRDRV-VEARDELHRML---NE-------------------------DELRDAVLLVFANKQDLPNAM--  134 (181)
T ss_pred             CEEEEEEeCCcHHHH-HHHHHHHHHHh---cC-------------------------HhhCCCCEEEEEECCCCCCCC--
Confidence            999999999999887 44444443221   11                         011258999999999985211  


Q ss_pred             chhhhhHHHHHHHHHHcCC--------eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGA--------SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga--------~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           .   ...++..+|+        .+++|||++|+|+++++++|.+.+
T Consensus       135 -----~---~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        135 -----N---AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             -----C---HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence                 1   1223333332        356899999999999999998775

>cd04129 Rho2 Rho2 subfamily

Probab=99.78  E-value=3.6e-18  Score=174.20  Aligned_cols=164  Identities=20%  Similarity=0.278  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .||+|+|++|||||||+++|..+.  ..+.++++..|.  ...........+.+||++|+..+......+    +.  ++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~----~~--~a   73 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV--TDCRVDGKPVQLALWDTAGQEEYERLRPLS----YS--KA   73 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE--EEEEECCEEEEEEEEECCCChhccccchhh----cC--CC
Confidence            489999999999999999998643  345566654432  221111122378999999998776544333    22  58


Q ss_pred             cEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +++++|||+++++++ +.+. .|++.++....                              .+|+++||||+|+..+..
T Consensus        74 ~~~llv~~i~~~~s~-~~~~~~~~~~i~~~~~------------------------------~~piilvgnK~Dl~~~~~  122 (187)
T cd04129          74 HVILIGFAVDTPDSL-ENVRTKWIEEVRRYCP------------------------------NVPVILVGLKKDLRQDAV  122 (187)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------------------CCCEEEEeeChhhhhCcc
Confidence            999999999999998 6665 68887764321                              489999999999853211


Q ss_pred             c-----chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 P-----NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~-----e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .     ..+.+..+....+++.+|+ .+++|||++|.|++++++.+...+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         123 AKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             cccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence            1     1344445678889999985 79999999999999999999877643

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04157 Arl6 Arl6 subfamily

Probab=99.78  E-value=3.5e-18  Score=167.93  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=108.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +|+++|++|||||||+++|++..   ..+.||++..+.  ...   ..+..+++||+||++++..++..+    ++  ++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~---~~~~~~~l~Dt~G~~~~~~~~~~~----~~--~~   69 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE---KGNLSFTAFDMSGQGKYRGLWEHY----YK--NI   69 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE---ECCEEEEEEECCCCHhhHHHHHHH----Hc--cC
Confidence            48999999999999999999853   356688875432  221   123479999999999988888777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|+|.+++.++ ..+..|+..+.+.. .                         ....++|+++|+||+|+..... 
T Consensus        70 d~ii~v~D~~~~~~~-~~~~~~~~~~~~~~-~-------------------------~~~~~~p~iiv~NK~Dl~~~~~-  121 (162)
T cd04157          70 QGIIFVIDSSDRLRL-VVVKDELELLLNHP-D-------------------------IKHRRVPILFFANKMDLPDALT-  121 (162)
T ss_pred             CEEEEEEeCCcHHHH-HHHHHHHHHHHcCc-c-------------------------cccCCCCEEEEEeCccccCCCC-
Confidence            999999999999887 66666766543210 0                         1123699999999999853111 


Q ss_pred             chhhhhHHHHHHHHH--HcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAH--VNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       194 e~r~~i~~~lr~la~--~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                        .... .....++.  .....+++|||++|.|+++++++|.+
T Consensus       122 --~~~~-~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         122 --AVKI-TQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             --HHHH-HHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence              0000 11111111  12345899999999999999988753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.77  E-value=6.3e-18  Score=172.27  Aligned_cols=156  Identities=14%  Similarity=0.174  Sum_probs=108.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .+||+++|++|||||||++++..+ ...+.||++.++.  ....   .+..+++||++|++++..++..+    ++  ++
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~a   85 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY---KNLKFTMWDVGGQDKLRPLWRHY----YQ--NT   85 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--CC
Confidence            579999999999999999999764 3345688886642  3222   23479999999999988888877    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|+|++++.++ +.+..++..+..   .                         .....+|++||+||.|+.+..+ 
T Consensus        86 d~iI~v~D~t~~~s~-~~~~~~l~~~~~---~-------------------------~~~~~~piilv~NK~Dl~~~~~-  135 (182)
T PTZ00133         86 NGLIFVVDSNDRERI-GDAREELERMLS---E-------------------------DELRDAVLLVFANKQDLPNAMS-  135 (182)
T ss_pred             CEEEEEEeCCCHHHH-HHHHHHHHHHHh---C-------------------------HhhcCCCEEEEEeCCCCCCCCC-
Confidence            999999999999887 555444433211   1                         0012479999999999842111 


Q ss_pred             chhhhhHHHHHHHH----HHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLA----HVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la----~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        ..   +....+.    ....+.+++|||++|.|++++++.|...+
T Consensus       136 --~~---~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i  177 (182)
T PTZ00133        136 --TT---EVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANI  177 (182)
T ss_pred             --HH---HHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence              11   1111111    11223567899999999999999998765

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.77  E-value=1.2e-17  Score=168.03  Aligned_cols=161  Identities=19%  Similarity=0.264  Sum_probs=121.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .||+|+|++|||||||+++|++..  ..+.|+++..+.  ...........+++||+||+.++..+...+    +.  ++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~--~~   73 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS--KIIRYKGQDYHLEIVDTAGQDEYSILPQKY----SI--GI   73 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE--EEEEECCEEEEEEEEECCChHhhHHHHHHH----Hh--hC
Confidence            689999999999999999999864  345677765442  222111122378999999998877766666    11  48


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|||+++..++ +.+..|++.+.+..                            ...++|+++|+||+|+..    
T Consensus        74 ~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~p~ilv~NK~Dl~~----  120 (180)
T cd04137          74 HGYILVYSVTSRKSF-EVVKVIYDKILDML----------------------------GKESVPIVLVGNKSDLHT----  120 (180)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEEchhhhh----
Confidence            999999999999988 77777776554421                            123589999999999842    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       .+.....+.+.++..++++++++||+++.|++++.+.+...+..
T Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         121 -QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             -cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             23344456778888889999999999999999999999887643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG1673|consensus

Probab=99.77  E-value=1.7e-18  Score=168.11  Aligned_cols=176  Identities=22%  Similarity=0.378  Sum_probs=146.9

Q ss_pred             ccCCccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649         29 IDIQSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF  106 (890)
Q Consensus        29 ~~~~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~  106 (890)
                      +.+..-+.||-++|++.+|||||+-++.++  ++.+..+.|+.+.-.+.. ....+..+.|||++|++++..+++..   
T Consensus        14 a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~-i~~t~IsfSIwdlgG~~~~~n~lPia---   89 (205)
T KOG1673|consen   14 AVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVS-IRGTDISFSIWDLGGQREFINMLPIA---   89 (205)
T ss_pred             ccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEE-ecceEEEEEEEecCCcHhhhccCcee---
Confidence            344566799999999999999999999986  356667888876433322 22223379999999999998888888   


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                         +.++-+++++||++.+.++ +++..|+++.+...+                             .-+| |+||+|+|
T Consensus        90 ---c~dsvaIlFmFDLt~r~TL-nSi~~WY~QAr~~Nk-----------------------------tAiP-ilvGTKyD  135 (205)
T KOG1673|consen   90 ---CKDSVAILFMFDLTRRSTL-NSIKEWYRQARGLNK-----------------------------TAIP-ILVGTKYD  135 (205)
T ss_pred             ---ecCcEEEEEEEecCchHHH-HHHHHHHHHHhccCC-----------------------------ccce-EEeccchH
Confidence               5568999999999999998 999999997776433                             2577 56799999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccCcc
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLA  242 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~  242 (890)
                      ++-+++++.+..+...+|++|+..++++++||+..+.|+++++..+...+|..+.+
T Consensus       136 ~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~~t  191 (205)
T KOG1673|consen  136 LFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLPWT  191 (205)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCcee
Confidence            99999999999999999999999999999999999999999999999999876653

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.77  E-value=1e-17  Score=172.64  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      ||+++|++|||||||+++|+++..  .+.+++. ++.... .........+++||++|++.+..+...+    +.  ++|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~-~~~~~~~~~l~i~D~~G~~~~~~~~~~~----~~--~ad   72 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKE-YEVGGVSLTLDILDTSGSYSFPAMRKLS----IQ--NSD   72 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEE-EEECCEEEEEEEEECCCchhhhHHHHHH----hh--cCC
Confidence            689999999999999999998643  3445554 322111 1111122479999999999888877666    22  599


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|||++++.++ +.+..|+..+.+...                            ..++|++||+||+|+...    
T Consensus        73 ~vilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~NK~Dl~~~----  119 (198)
T cd04147          73 AFALVYAVDDPESF-EEVERLREEILEVKE----------------------------DKFVPIVVVGNKADSLEE----  119 (198)
T ss_pred             EEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEEccccccc----
Confidence            99999999999998 778888877665422                            136899999999998531    


Q ss_pred             hhhhhHHHHHHHH-HHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLA-HVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       195 ~r~~i~~~lr~la-~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+........+.+ ..+++.++++||++|.|++++++.|...+
T Consensus       120 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  162 (198)
T cd04147         120 ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQA  162 (198)
T ss_pred             cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence            2222233333333 35578899999999999999999998876

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.77  E-value=3.4e-18  Score=168.16  Aligned_cols=156  Identities=21%  Similarity=0.205  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      +|+++|++|||||||+++|+++.. ...||++.++.  ...  ......+++||++|+..+..+...+    +.  ++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~l~i~D~~G~~~~~~~~~~~----~~--~~~~   70 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQ--LEKHLSLTVWDVGGQEKMRTVWKCY----LE--NTDG   70 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEE--eCCceEEEEEECCCCHhHHHHHHHH----hc--cCCE
Confidence            589999999999999999998643 34577775432  222  1223489999999998887777665    22  5999


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +|+|+|.+++.++ ..+..|+..+.+..                            ...++|+++|+||+|+.....   
T Consensus        71 iv~v~D~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~nK~Dl~~~~~---  118 (160)
T cd04156          71 LVYVVDSSDEARL-DESQKELKHILKNE----------------------------HIKGVPVVLLANKQDLPGALT---  118 (160)
T ss_pred             EEEEEECCcHHHH-HHHHHHHHHHHhch----------------------------hhcCCCEEEEEECcccccCcC---
Confidence            9999999999887 56666655443211                            012689999999999852111   


Q ss_pred             hhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        196 KRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       196 r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      ...+...  +..++...++.+++|||++|.|++++++.|..
T Consensus       119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            1111111  12333334567999999999999999888753

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.77  E-value=1.5e-17  Score=173.26  Aligned_cols=161  Identities=17%  Similarity=0.208  Sum_probs=124.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+++|++|||||||+++++.+.  ..+.+|++.++....... ......+++||++|+.++..+...+    ++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~i~~~Dt~g~~~~~~~~~~~----~~   80 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYT-NCGPICFNVWDTAGQEKFGGLRDGY----YI   80 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCchhhhhhhHHH----hc
Confidence            4557899999999999999999887653  567889987764322221 2223489999999998888777666    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++|+|||+++..++ ..+..|+..+.+..+                              .+|+++||||+|+.+
T Consensus        81 --~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------------------~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         81 --KGQCAIIMFDVTSRITY-KNVPNWHRDIVRVCE------------------------------NIPIVLVGNKVDVKD  127 (215)
T ss_pred             --cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC------------------------------CCCEEEEEECccCcc
Confidence              48999999999999998 888889887765321                              489999999999842


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                            +.... ....++...++.++++||+++.|+++.+..|...+.
T Consensus       128 ------~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~  168 (215)
T PTZ00132        128 ------RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT  168 (215)
T ss_pred             ------ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence                  22222 223567778899999999999999999998888774

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.77  E-value=2.4e-18  Score=172.10  Aligned_cols=149  Identities=20%  Similarity=0.213  Sum_probs=110.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      |+++|++|||||||+++|+++  ...+.||++.++  ....   ..+.++++||++|+..+..+...+    ++  ++|+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~---~~~~~l~i~Dt~G~~~~~~~~~~~----~~--~ad~   70 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIP---TQDAIMELLEIGGSQNLRKYWKRY----LS--GSQG   70 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEe---eCCeEEEEEECCCCcchhHHHHHH----Hh--hCCE
Confidence            899999999999999999986  346678888653  2222   223489999999999988888777    22  5999


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +|+|+|.+++.++ ..+..|+..+...                              ..++|+++|+||+|+..     .
T Consensus        71 ii~V~D~t~~~s~-~~~~~~l~~~~~~------------------------------~~~~piilv~NK~Dl~~-----~  114 (164)
T cd04162          71 LIFVVDSADSERL-PLARQELHQLLQH------------------------------PPDLPLVVLANKQDLPA-----A  114 (164)
T ss_pred             EEEEEECCCHHHH-HHHHHHHHHHHhC------------------------------CCCCcEEEEEeCcCCcC-----C
Confidence            9999999999887 6666666544221                              12689999999999853     2


Q ss_pred             hhhh----HHHHHHHHHHcCCeEEEEeccC------CCCHHHHHHHHH
Q psy11649        196 KRIA----VQCLRYLAHVNGASLLFHSSLD------PGLVKRTRDILN  233 (890)
Q Consensus       196 r~~i----~~~lr~la~~~Ga~l~etSAK~------~~nId~Lk~~I~  233 (890)
                      +...    ...+..++.+.++.+++|||++      ++|++++++.+.
T Consensus       115 ~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         115 RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence            2111    1235667777889999999999      788888766553

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0395|consensus

Probab=99.76  E-value=6.1e-18  Score=175.18  Aligned_cols=161  Identities=20%  Similarity=0.251  Sum_probs=131.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+++|.+|||||+|+.+|.+.  .+.|.||+...|.  +..........+.|+||+|+..+..+...+    ++  
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~--k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~----~~--   73 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYR--KELTVDGEVCMLEILDTAGQEEFSAMRDLY----IR--   73 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccce--EEEEECCEEEEEEEEcCCCcccChHHHHHh----hc--
Confidence            3689999999999999999999986  4578899885543  222222333489999999999999998888    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +.+++++||++++..|| +.+..+.+.|.+....                            ..+|+++||||+|+.   
T Consensus        74 ~~~gF~lVysitd~~SF-~~~~~l~~~I~r~~~~----------------------------~~~PivlVGNK~Dl~---  121 (196)
T KOG0395|consen   74 NGDGFLLVYSITDRSSF-EEAKQLREQILRVKGR----------------------------DDVPIILVGNKCDLE---  121 (196)
T ss_pred             cCcEEEEEEECCCHHHH-HHHHHHHHHHHHhhCc----------------------------CCCCEEEEEEcccch---
Confidence            58999999999999999 7777777776332211                            248999999999995   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        ..|.+..++.+.++..++|+|+||||+.+.|+++++..+.+.+
T Consensus       122 --~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~  164 (196)
T KOG0395|consen  122 --RERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREI  164 (196)
T ss_pred             --hccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHH
Confidence              3589999999999999999999999999999999988887765

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.76  E-value=1.7e-16  Score=182.13  Aligned_cols=147  Identities=19%  Similarity=0.142  Sum_probs=97.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--------hhHHhhhhc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--------LEVASLFSS  105 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--------~~Li~~~r~  105 (890)
                      +|+++|.+|||||||+|+|+++..   ...++++.+..+.....   .+..+.+|||||....        ......+  
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~--   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW---GGREFILIDTGGIEEDDDGLDKQIREQAEIA--   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE---CCeEEEEEECCCCCCcchhHHHHHHHHHHHH--
Confidence            589999999999999999998642   23356665544333222   2237999999996432        1112222  


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                        ++  .+|++++|+|.++..+.  .-..+.+.+++                                .+.|+++|+||+
T Consensus        76 --~~--~ad~vl~vvD~~~~~~~--~d~~i~~~l~~--------------------------------~~~piilVvNK~  117 (429)
T TIGR03594        76 --IE--EADVILFVVDGREGLTP--EDEEIAKWLRK--------------------------------SGKPVILVANKI  117 (429)
T ss_pred             --Hh--hCCEEEEEEeCCCCCCH--HHHHHHHHHHH--------------------------------hCCCEEEEEECc
Confidence              22  59999999999886553  22222222222                                257999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+..     ... .   ... ...+|+ .++++||++|.|++++.+.+...+
T Consensus       118 D~~~-----~~~-~---~~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l  159 (429)
T TIGR03594       118 DGKK-----EDA-V---AAE-FYSLGFGEPIPISAEHGRGIGDLLDAILELL  159 (429)
T ss_pred             cCCc-----ccc-c---HHH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence            9852     111 1   111 245676 699999999999999999887765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.76  E-value=4.2e-18  Score=164.90  Aligned_cols=134  Identities=22%  Similarity=0.220  Sum_probs=99.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCc-----chhhHHhhhhccccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT-----SRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~-----~~~~Li~~~r~~~~~~~  111 (890)
                      ||+++|++|||||||+++|++....+.+|++++|.             -.+|||||++     .+..+...     ++  
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~~~~t~~~~~~-------------~~~iDt~G~~~~~~~~~~~~~~~-----~~--   61 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEILYKKTQAVEYN-------------DGAIDTPGEYVENRRLYSALIVT-----AA--   61 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccccccceeEEEc-------------CeeecCchhhhhhHHHHHHHHHH-----hh--
Confidence            89999999999999999999977667777766642             1689999984     22222222     23  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++.++++  ..|.+.                                   .+.|+++|+||+|+.+  
T Consensus        62 ~ad~vilv~d~~~~~s~~~--~~~~~~-----------------------------------~~~p~ilv~NK~Dl~~--  102 (142)
T TIGR02528        62 DADVIALVQSATDPESRFP--PGFASI-----------------------------------FVKPVIGLVTKIDLAE--  102 (142)
T ss_pred             cCCEEEEEecCCCCCcCCC--hhHHHh-----------------------------------ccCCeEEEEEeeccCC--
Confidence            5999999999999998732  234321                                   0249999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~  233 (890)
                          +....+.+++++..++. +++++||+++.|++++++.|.
T Consensus       103 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       103 ----ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ----cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence                22234556777777776 799999999999999988763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PLN00023 GTP-binding protein; Provisional

Probab=99.76  E-value=1e-17  Score=184.02  Aligned_cols=157  Identities=20%  Similarity=0.246  Sum_probs=114.4

Q ss_pred             ccCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecc------------ccceEEEEEEcCCCc
Q psy11649         29 IDIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKT------------VMKDICHLWELGSGT   94 (890)
Q Consensus        29 ~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~------------~~k~~l~IwDlpG~~   94 (890)
                      .......+||+|+|+.|||||||+++|+++.  ..+.+|+|.++.........            .....++||||+|++
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE   94 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE   94 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence            4557788999999999999999999999864  46778999886433333110            122479999999999


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc-ccccC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK-GLIRT  173 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~-~li~~  173 (890)
                      +|..+...+    ++  +++++|+|||+++.++| +++..|++.+.+......                  |.. .--..
T Consensus        95 rfrsL~~~y----yr--~AdgiILVyDITdr~SF-enL~kWl~eI~~~~~~s~------------------p~~s~~~~~  149 (334)
T PLN00023         95 RYKDCRSLF----YS--QINGVIFVHDLSQRRTK-TSLQKWASEVAATGTFSA------------------PLGSGGPGG  149 (334)
T ss_pred             hhhhhhHHh----cc--CCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhccccc------------------ccccccccC
Confidence            999999888    33  59999999999999998 999999998876432100                  000 00001


Q ss_pred             CCCcEEEEeecccCCCCCCcchhh---hhHHHHHHHHHHcCC
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKR---IAVQCLRYLAHVNGA  212 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~---~i~~~lr~la~~~Ga  212 (890)
                      .++|++|||||+|+....  ..|.   +..++++++|+++|+
T Consensus       150 ~~ipIILVGNK~DL~~~~--~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        150 LPVPYIVIGNKADIAPKE--GTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             CCCcEEEEEECccccccc--cccccccccHHHHHHHHHHcCC
Confidence            258999999999985210  0122   357899999999875

>cd01893 Miro1 Miro1 subfamily

Probab=99.76  E-value=2.3e-17  Score=164.48  Aligned_cols=159  Identities=17%  Similarity=0.156  Sum_probs=109.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      .||+++|++|||||||+++|+++.. ...++...++.  ...........+++||++|.+.+...+..+    +.  +++
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~ad   72 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEIT--IPADVTPERVPTTIVDTSSRPQDRANLAAE----IR--KAN   72 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceE--eeeeecCCeEEEEEEeCCCchhhhHHHhhh----cc--cCC
Confidence            3899999999999999999998643 11233322221  111111223489999999998766555444    22  599


Q ss_pred             EEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        115 TLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      ++++|||++++.++ +.+ ..|...+++..                              .++|+++|+||+|+..... 
T Consensus        73 ~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~pviiv~nK~Dl~~~~~-  120 (166)
T cd01893          73 VICLVYSVDRPSTL-ERIRTKWLPLIRRLG------------------------------VKVPIILVGNKSDLRDGSS-  120 (166)
T ss_pred             EEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEchhcccccc-
Confidence            99999999999998 665 46877665421                              1589999999999953211 


Q ss_pred             chhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .....+.+..++..++  ..+++|||+++.|++++++.+...+
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         121 --QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             --hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence              1112333444444443  3799999999999999999887765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.76  E-value=6.6e-18  Score=167.27  Aligned_cols=155  Identities=19%  Similarity=0.225  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC--------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN--------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~--------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      +|+|+|++|||||||+++|++..        ..+.+|++.++.  ....   .+..+.+||+||+..+..+...+    +
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~   71 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV---GNARLKFWDLGGQESLRSLWDKY----Y   71 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE---CCEEEEEEECCCChhhHHHHHHH----h
Confidence            48999999999999999998631        244567776643  2221   23489999999998888777666    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      .  +++++++|+|.++++++ +....|+..+.+..                            ...++|+++|+||+|+.
T Consensus        72 ~--~~~~~v~vvd~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~p~ilv~NK~D~~  120 (167)
T cd04160          72 A--ECHAIIYVIDSTDRERF-EESKSALEKVLRNE----------------------------ALEGVPLLILANKQDLP  120 (167)
T ss_pred             C--CCCEEEEEEECchHHHH-HHHHHHHHHHHhCh----------------------------hhcCCCEEEEEEccccc
Confidence            2  59999999999998876 55566665443211                            11268999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHH---HHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLA---HVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la---~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      ....   ...+...+....   ...+++++++||++|.|++++.++|..
T Consensus       121 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         121 DALS---VEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             cCCC---HHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            3211   111111111111   113568999999999999999888753

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.75  E-value=1.3e-17  Score=168.14  Aligned_cols=154  Identities=18%  Similarity=0.206  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .++|+++|++|||||||+++|+++. ..+.||++.++.  ....   .+..+.+||+||++++......+    ++  ++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~~   83 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVY---KNIRFLMWDIGGQESLRSSWNTY----YT--NT   83 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEE---CCeEEEEEECCCCHHHHHHHHHH----hh--cC
Confidence            5789999999999999999998753 345677776542  2221   23479999999999887777666    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|+|.++++++ .....|+..+.+..                            ....+|++||+||+|+....+.
T Consensus        84 d~vi~V~D~s~~~~~-~~~~~~l~~~~~~~----------------------------~~~~~p~viv~NK~Dl~~~~~~  134 (174)
T cd04153          84 DAVILVIDSTDRERL-PLTKEELYKMLAHE----------------------------DLRKAVLLVLANKQDLKGAMTP  134 (174)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHhch----------------------------hhcCCCEEEEEECCCCCCCCCH
Confidence            999999999999887 44444444332210                            1125899999999998532111


Q ss_pred             chhhhhHHHHHHHH----HHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLA----HVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       194 e~r~~i~~~lr~la----~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                         .   +..+.+.    ...++.+++|||++|.|++++++.|..
T Consensus       135 ---~---~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         135 ---A---EISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ---H---HHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence               1   1112222    234567999999999999999888753

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.75  E-value=1.4e-17  Score=164.24  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      ||+|+|++|||||||+++|+.+. ..+.||++.++.  ....   .+..+++||+||+.++..+...+    ++  ++++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~~~   69 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY---KNLKFQVWDLGGQTSIRPYWRCY----YS--NTDA   69 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--CCCE
Confidence            58999999999999999997653 244577775532  2222   23479999999999888887776    22  5999


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +|+|+|++++.++ .....|+..+.+.                            ....++|+++|+||+|+.+...  .
T Consensus        70 ii~v~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~piiiv~nK~Dl~~~~~--~  118 (158)
T cd04151          70 IIYVVDSTDRDRL-GTAKEELHAMLEE----------------------------EELKGAVLLVFANKQDMPGALS--E  118 (158)
T ss_pred             EEEEEECCCHHHH-HHHHHHHHHHHhc----------------------------hhhcCCcEEEEEeCCCCCCCCC--H
Confidence            9999999998776 3333333222110                            0112589999999999853111  0


Q ss_pred             hhhhHHHHH-HHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        196 KRIAVQCLR-YLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       196 r~~i~~~lr-~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      .. +...+. ......+..+++|||+++.|++++++.|.+
T Consensus       119 ~~-i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         119 AE-ISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HH-HHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            11 111110 011122356999999999999999888753

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.75  E-value=4.4e-16  Score=179.18  Aligned_cols=148  Identities=18%  Similarity=0.130  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-----HHhhhhccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-----VASLFSSFS  107 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-----Li~~~r~~~  107 (890)
                      .+|+|+|.+|||||||+|+|++...   ...++++.+..+......   +..+.+|||||......     +.... ...
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~---~~~~~liDT~G~~~~~~~~~~~~~~~~-~~~   77 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL---GREFILIDTGGIEPDDDGFEKQIREQA-ELA   77 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC---CcEEEEEECCCCCCcchhHHHHHHHHH-HHH
Confidence            4799999999999999999998532   223556555443333221   24799999999876111     11111 001


Q ss_pred             cccccCcEEEEEEeCCCcCchH-HHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLW-TEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~-~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      +.  ++|++|+|+|.++..+.. ..+..|+.   +                                .++|+++|+||+|
T Consensus        78 ~~--~ad~il~vvd~~~~~~~~~~~~~~~l~---~--------------------------------~~~piilv~NK~D  120 (435)
T PRK00093         78 IE--EADVILFVVDGRAGLTPADEEIAKILR---K--------------------------------SNKPVILVVNKVD  120 (435)
T ss_pred             HH--hCCEEEEEEECCCCCCHHHHHHHHHHH---H--------------------------------cCCcEEEEEECcc
Confidence            22  599999999999865531 12222322   1                                1589999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~  234 (890)
                      +..      ..   .....+ ..+|+. ++++||++|.|++++.+.|..
T Consensus       121 ~~~------~~---~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        121 GPD------EE---ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             Ccc------ch---hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence            742      11   112222 345664 899999999999999888876

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.73  E-value=7.7e-17  Score=158.42  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      ||+++|.+|||||||+++++++. ..+.++++..+.  ....   .+..+.+||+||+..+..+...+    ++  ++++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~----~~--~~~~   69 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY---KNVSFTVWDVGGQDKIRPLWKHY----YE--NTNG   69 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEE---CCEEEEEEECCCChhhHHHHHHH----hc--cCCE
Confidence            68999999999999999999864 345566665432  2221   23479999999999888777766    22  5899


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +++|||+++++++ ..+..|+..+....                            ...+.|+++|+||+|+....+   
T Consensus        70 ~i~v~D~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~piiiv~nK~D~~~~~~---  117 (158)
T cd00878          70 IIFVVDSSDRERI-EEAKEELHKLLNEE----------------------------ELKGVPLLIFANKQDLPGALS---  117 (158)
T ss_pred             EEEEEECCCHHHH-HHHHHHHHHHHhCc----------------------------ccCCCcEEEEeeccCCccccC---
Confidence            9999999999887 55555555443311                            123689999999999853111   


Q ss_pred             hhhhHHHHHHH-HHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        196 KRIAVQCLRYL-AHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       196 r~~i~~~lr~l-a~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                      .....+.++.. +....++++++||++|.|++++++.|.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         118 VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence            11111111111 122356799999999999999977764

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.72  E-value=2e-15  Score=183.84  Aligned_cols=154  Identities=17%  Similarity=0.132  Sum_probs=97.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhh---hccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLF---SSFS  107 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~---r~~~  107 (890)
                      ..+|+++|.+|||||||+|+|++...   ...|+++.+..+....   ..+..+.+|||||.... ..+...+   ....
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~---~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE---WAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE---ECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            36899999999999999999998532   3346666553322111   12237999999997631 1111111   0111


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +.  .+|++|+|+|.++.-..  .-..|.+.++.                                .++|+++|+||+|+
T Consensus       352 ~~--~aD~iL~VvDa~~~~~~--~d~~i~~~Lr~--------------------------------~~~pvIlV~NK~D~  395 (712)
T PRK09518        352 VS--LADAVVFVVDGQVGLTS--TDERIVRMLRR--------------------------------AGKPVVLAVNKIDD  395 (712)
T ss_pred             HH--hCCEEEEEEECCCCCCH--HHHHHHHHHHh--------------------------------cCCCEEEEEECccc
Confidence            22  59999999999874332  22234443321                                26899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..     ..   ......+...++. .+++||++|.|++++++.|.+.+
T Consensus       396 ~~-----~~---~~~~~~~~lg~~~-~~~iSA~~g~GI~eLl~~i~~~l  435 (712)
T PRK09518        396 QA-----SE---YDAAEFWKLGLGE-PYPISAMHGRGVGDLLDEALDSL  435 (712)
T ss_pred             cc-----ch---hhHHHHHHcCCCC-eEEEECCCCCCchHHHHHHHHhc
Confidence            52     11   1112222222333 57999999999999999988775

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.72  E-value=5.6e-17  Score=162.51  Aligned_cols=156  Identities=21%  Similarity=0.221  Sum_probs=111.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      +|+++|.+|||||||+++|+++ ...+.||++...  .....   .+..+++||+||+..+..+...+    ++  ++++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~--~~~~~---~~~~~~i~D~~G~~~~~~~~~~~----~~--~a~~   69 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP--TKLRL---DKYEVCIFDLGGGANFRGIWVNY----YA--EAHG   69 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE--EEEEE---CCEEEEEEECCCcHHHHHHHHHH----Hc--CCCE
Confidence            4899999999999999999986 346678887542  12211   23489999999999888887777    22  5999


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +|+|+|.+++.++ +.+..|+..+....                            ...++|++||+||+|+....+. .
T Consensus        70 ii~V~D~s~~~s~-~~~~~~l~~l~~~~----------------------------~~~~~piliv~NK~Dl~~~~~~-~  119 (167)
T cd04161          70 LVFVVDSSDDDRV-QEVKEILRELLQHP----------------------------RVSGKPILVLANKQDKKNALLG-A  119 (167)
T ss_pred             EEEEEECCchhHH-HHHHHHHHHHHcCc----------------------------cccCCcEEEEEeCCCCcCCCCH-H
Confidence            9999999999887 77777777554321                            1126899999999998532110 0


Q ss_pred             hhhhHHHHHHHHHHcC--CeEEEEeccCC------CCHHHHHHHHH
Q psy11649        196 KRIAVQCLRYLAHVNG--ASLLFHSSLDP------GLVKRTRDILN  233 (890)
Q Consensus       196 r~~i~~~lr~la~~~G--a~l~etSAK~~------~nId~Lk~~I~  233 (890)
                      .......+..++.+.+  +.+++|||++|      .|+++..++|.
T Consensus       120 ~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         120 DVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             HHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence            0111112344554443  56888999998      89999988875

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00879 Sar1 Sar1 subfamily

Probab=99.72  E-value=1e-16  Score=162.92  Aligned_cols=155  Identities=17%  Similarity=0.223  Sum_probs=108.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ...+|+++|++|||||||+++|+++. ..+.||++...  .....   .+..+++||+||+..+..++..+    ++  +
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~---~~~~~~l~D~~G~~~~~~~~~~~----~~--~   86 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTI---GNIKFKTFDLGGHEQARRLWKDY----FP--E   86 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--c
Confidence            36799999999999999999999853 34556666432  12111   23478999999998887776666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|+++..++ +....|+..+.+.                            ....++|++||+||+|+...  
T Consensus        87 ad~iilV~D~~~~~s~-~~~~~~~~~i~~~----------------------------~~~~~~pvivv~NK~Dl~~~--  135 (190)
T cd00879          87 VDGIVFLVDAADPERF-QESKEELDSLLSD----------------------------EELANVPFLILGNKIDLPGA--  135 (190)
T ss_pred             CCEEEEEEECCcHHHH-HHHHHHHHHHHcC----------------------------ccccCCCEEEEEeCCCCCCC--
Confidence            8999999999999887 4455555443321                            11125899999999998521  


Q ss_pred             cchhhhhHHHHHHHHHH----------------cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHV----------------NGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~----------------~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                           ....+++.+...                ..+.+++|||+++.|+++++++|...
T Consensus       136 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         136 -----VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             -----cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence                 222334443321                22468999999999999999988764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04171 SelB SelB subfamily

Probab=99.72  E-value=2.4e-16  Score=154.64  Aligned_cols=153  Identities=11%  Similarity=0.057  Sum_probs=99.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .|+++|++|||||||+++|++..     ..+.++++++..+......  ....+++|||||++++......+    ++  
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~~~----~~--   73 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP--SGKRLGFIDVPGHEKFIKNMLAG----AG--   73 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec--CCcEEEEEECCChHHHHHHHHhh----hh--
Confidence            58999999999999999999742     1233455555544333221  13479999999998775443333    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC-cEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV-PLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d  190 (890)
                      ++|++++|+|+++....  .....+..+..                                .+. |+++|+||+|+.. 
T Consensus        74 ~ad~ii~V~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~~ilv~NK~Dl~~-  118 (164)
T cd04171          74 GIDLVLLVVAADEGIMP--QTREHLEILEL--------------------------------LGIKRGLVVLTKADLVD-  118 (164)
T ss_pred             cCCEEEEEEECCCCccH--hHHHHHHHHHH--------------------------------hCCCcEEEEEECccccC-
Confidence            59999999999874321  11222211110                                123 8999999999852 


Q ss_pred             CCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                        .+.......++.+....   .+.+++++||+++.|++++++.|.+
T Consensus       119 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         119 --EDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             --HHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence              11122223344444444   4678999999999999999888754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01890 LepA LepA subfamily

Probab=99.71  E-value=2.1e-16  Score=158.43  Aligned_cols=154  Identities=16%  Similarity=0.087  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCCc------cceeEEEEEEec----cccceEEEEEEcCCCcch
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---------TPKPTL------ALEYIYARKSGK----TVMKDICHLWELGSGTSR   96 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---------~~kpti------gvdY~f~~~~g~----~~~k~~l~IwDlpG~~~~   96 (890)
                      .+|+++|++|||||||+++|++...         .+.+++      |+.+........    ...+..+++|||||+..+
T Consensus         1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   80 (179)
T cd01890           1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF   80 (179)
T ss_pred             CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence            3699999999999999999987321         122222      223221111110    223347999999999988


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ..+...+    ++  ++|++|+|+|+++..++ ..+..|....    .                             .++
T Consensus        81 ~~~~~~~----~~--~ad~~i~v~D~~~~~~~-~~~~~~~~~~----~-----------------------------~~~  120 (179)
T cd01890          81 SYEVSRS----LA--ACEGALLLVDATQGVEA-QTLANFYLAL----E-----------------------------NNL  120 (179)
T ss_pred             HHHHHHH----HH--hcCeEEEEEECCCCccH-hhHHHHHHHH----H-----------------------------cCC
Confidence            7777666    22  59999999999997765 4555554311    1                             258


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+++|+||+|+..     .+  ......+++..+++.   ++++||++|.|+++++++|...+
T Consensus       121 ~iiiv~NK~Dl~~-----~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         121 EIIPVINKIDLPS-----AD--PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CEEEEEECCCCCc-----CC--HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            9999999999842     11  122345666666764   89999999999999999887654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.71  E-value=3.3e-16  Score=155.23  Aligned_cols=157  Identities=16%  Similarity=0.188  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC--CCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHH--hhhhcccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTP--KPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVA--SLFSSFSL  108 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~--kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li--~~~r~~~~  108 (890)
                      +|+++|++|||||||+++|++.....  .+..+.+.....   ......+++||||||+...    +..+  ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH---FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE---EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            79999999999999999999964321  121222211111   1112348999999997421    0000  00010011


Q ss_pred             ccccCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      .   +|++|+|+|.++..++ .+....|++.+....                              .++|+++|+||+|+
T Consensus        79 ~---~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~------------------------------~~~pvilv~NK~Dl  125 (168)
T cd01897          79 L---RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF------------------------------KNKPVIVVLNKIDL  125 (168)
T ss_pred             c---cCcEEEEEeCCcccccchHHHHHHHHHHHhhc------------------------------CcCCeEEEEEcccc
Confidence            2   6899999999998764 133445665544321                              15899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..     .+. ... .++++...+..+++|||++|.|+++++++|...+
T Consensus       126 ~~-----~~~-~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         126 LT-----FED-LSE-IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             Cc-----hhh-HHH-HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            52     121 111 4555665678899999999999999999998775

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.71  E-value=1.8e-16  Score=157.15  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcc----hhhHHhhh-hccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----RLEVASLF-SSFSLT  109 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----~~~Li~~~-r~~~~~  109 (890)
                      .|+++|.+|||||||+|+|++....  ..+..+.+.......  ......+.+|||||...    .+.+...+ +.  +.
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--~~   77 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVR--VDDGRSFVVADIPGLIEGASEGKGLGHRFLRH--IE   77 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEE--cCCCCeEEEEecCcccCcccccCCchHHHHHH--HH
Confidence            5899999999999999999974311  111122221111111  11113799999999742    22233333 21  11


Q ss_pred             cccCcEEEEEEeCCCc-CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp-~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        ++|++++|+|++++ .++ +++..|.+.+.+....                           ..+.|+++|+||+|+.
T Consensus        78 --~~d~vi~v~D~~~~~~~~-~~~~~~~~~l~~~~~~---------------------------~~~~p~ivv~NK~Dl~  127 (170)
T cd01898          78 --RTRLLLHVIDLSGDDDPV-EDYKTIRNELELYNPE---------------------------LLEKPRIVVLNKIDLL  127 (170)
T ss_pred             --hCCEEEEEEecCCCCCHH-HHHHHHHHHHHHhCcc---------------------------ccccccEEEEEchhcC
Confidence              48999999999999 676 7888888877654211                           1258999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      .      +.........+... .+.+++++||+++.|++++++.|.++
T Consensus       128 ~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         128 D------EEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             C------chhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            2      12223334445555 47789999999999999999988765

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.69  E-value=3.2e-16  Score=151.64  Aligned_cols=151  Identities=19%  Similarity=0.213  Sum_probs=106.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      |+++|++|||||||+++|++..  ..+.||++.++.  ...   .....+.+||+||+..+..+...+    ++  ++++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~D~~g~~~~~~~~~~~----~~--~~d~   70 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVT---KGNVTLKVWDLGGQPRFRSMWERY----CR--GVNA   70 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEE---ECCEEEEEEECCCCHhHHHHHHHH----Hh--cCCE
Confidence            7999999999999999999963  456678876642  222   122479999999999888877776    22  5899


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +++|+|++++.++ .....|+..+...                            ....++|+++|+||+|+....   .
T Consensus        71 ii~v~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~p~iiv~nK~D~~~~~---~  118 (159)
T cd04159          71 IVYVVDAADRTAL-EAAKNELHDLLEK----------------------------PSLEGIPLLVLGNKNDLPGAL---S  118 (159)
T ss_pred             EEEEEECCCHHHH-HHHHHHHHHHHcC----------------------------hhhcCCCEEEEEeCccccCCc---C
Confidence            9999999998887 4444555433221                            112368999999999985311   1


Q ss_pred             hhhhHHHHHHH----HHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        196 KRIAVQCLRYL----AHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       196 r~~i~~~lr~l----a~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      .   .+....+    ....+.+++++|++++.|++++++.|..
T Consensus       119 ~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         119 V---DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             H---HHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            1   1111111    1223467899999999999999888754

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG4252|consensus

Probab=99.69  E-value=1.9e-17  Score=164.21  Aligned_cols=162  Identities=17%  Similarity=0.219  Sum_probs=137.5

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      .+..+|++++|+.+|||||++.++|.+  ...|+.|+|++|.  .+.. ...++.++.+||++|+++|..+...|    |
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfl--erqi~v~~Edvr~mlWdtagqeEfDaItkAy----y   90 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFL--ERQIKVLIEDVRSMLWDTAGQEEFDAITKAY----Y   90 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhh--hHHHHhhHHHHHHHHHHhccchhHHHHHHHH----h
Confidence            456799999999999999999999986  5689999999964  2222 22233478999999999999999998    5


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  +|.+.++||.-++..|| +....|.+.+....+.                              ||.++|-||+|+.
T Consensus        91 r--gaqa~vLVFSTTDr~SF-ea~~~w~~kv~~e~~~------------------------------IPtV~vqNKIDlv  137 (246)
T KOG4252|consen   91 R--GAQASVLVFSTTDRYSF-EATLEWYNKVQKETER------------------------------IPTVFVQNKIDLV  137 (246)
T ss_pred             c--cccceEEEEecccHHHH-HHHHHHHHHHHHHhcc------------------------------CCeEEeeccchhh
Confidence            5  79999999999999999 9999999988776654                              9999999999997


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +     ..+....+.+.+++.+.+.++.||+++..|+...+.|+...+.
T Consensus       138 e-----ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~  181 (246)
T KOG4252|consen  138 E-----DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLT  181 (246)
T ss_pred             H-----hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence            4     4556677888999999999999999999999999999977653

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.68  E-value=7.7e-16  Score=156.95  Aligned_cols=154  Identities=16%  Similarity=0.182  Sum_probs=106.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      ..+|+++|.+|||||||+++|.++.. .+.||.+....  ...   ..+.++.+||+||+.++..+...+    +.  ++
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~---~~~~~~~~~D~~G~~~~~~~~~~~----~~--~a   85 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELA---IGNIKFTTFDLGGHQQARRLWKDY----FP--EV   85 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEE---ECCEEEEEEECCCCHHHHHHHHHH----hC--CC
Confidence            57899999999999999999998633 34456554311  111   123479999999998888887777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++|+|+|++++.++ .....|+..+.+.                            ....++|+++|+||+|+....+ 
T Consensus        86 d~ii~vvD~~~~~~~-~~~~~~l~~l~~~----------------------------~~~~~~piliv~NK~Dl~~~~~-  135 (184)
T smart00178       86 NGIVYLVDAYDKERF-AESKRELDALLSD----------------------------EELATVPFLILGNKIDAPYAAS-  135 (184)
T ss_pred             CEEEEEEECCcHHHH-HHHHHHHHHHHcC----------------------------hhhcCCCEEEEEeCccccCCCC-
Confidence            999999999999887 5555555433221                            0112689999999999843221 


Q ss_pred             chhhhhHHHHHHHHHH------------cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHV------------NGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~------------~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                            ..++++....            ....+++|||+++.|++++.++|...
T Consensus       136 ------~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      136 ------EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ------HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence                  1222221100            12349999999999999999998653

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01878 HflX HflX subfamily

Probab=99.68  E-value=6.4e-16  Score=159.37  Aligned_cols=159  Identities=16%  Similarity=0.113  Sum_probs=103.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hcc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSF  106 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~  106 (890)
                      ...++|+|+|++|||||||+++|++....  ..+..+++.......  ......+.+|||||....  ..+...+  ...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLR--LPDGREVLLTDTVGFIRDLPHQLVEAFRSTLE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEE--ecCCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence            44689999999999999999999986321  112222232221211  111227999999997431  1121222  001


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .+.  ++|++++|+|++++.++ ..+..|.+.+...                             ...++|+++|+||+|
T Consensus       117 ~~~--~~d~ii~v~D~~~~~~~-~~~~~~~~~l~~~-----------------------------~~~~~~viiV~NK~D  164 (204)
T cd01878         117 EVA--EADLLLHVVDASDPDYE-EQIETVEKVLKEL-----------------------------GAEDIPMILVLNKID  164 (204)
T ss_pred             HHh--cCCeEEEEEECCCCChh-hHHHHHHHHHHHc-----------------------------CcCCCCEEEEEEccc
Confidence            112  48999999999998876 5555666544331                             122589999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +..     ... ..    ..+...+.+++++||+++.|++++++.|...
T Consensus       165 l~~-----~~~-~~----~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         165 LLD-----DEE-LE----ERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             cCC-----hHH-HH----HHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            852     111 11    3445567789999999999999999988764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0393|consensus

Probab=99.67  E-value=1.3e-16  Score=163.72  Aligned_cols=167  Identities=19%  Similarity=0.201  Sum_probs=129.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+|++|||+.+||||+|+..++.+  .+.|.||+--.|.-....+ ......+.+|||+||+.|..+....    |.  
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~-dg~~v~L~LwDTAGqedYDrlRpls----Y~--   75 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVD-DGKPVELGLWDTAGQEDYDRLRPLS----YP--   75 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEec-CCCEEEEeeeecCCCcccccccccC----CC--
Confidence            3689999999999999999999876  4588899886654322211 1222379999999999987765333    44  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++++||+++++.||.+...+|+.+++.++.                              ++|+|+||+|.||..+.
T Consensus        76 ~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp------------------------------~vpiiLVGtk~DLr~d~  125 (198)
T KOG0393|consen   76 QTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP------------------------------NVPIILVGTKADLRDDP  125 (198)
T ss_pred             CCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC------------------------------CCCEEEEeehHHhhhCH
Confidence            699999999999999997778899998888763                              49999999999997432


Q ss_pred             Cc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 EP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ..       ...-+..++.+.+|++.|+ .|++|||++..|+++.++.-...+.
T Consensus       126 ~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l  179 (198)
T KOG0393|consen  126 STLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAAL  179 (198)
T ss_pred             HHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHh
Confidence            11       1124667889999999994 6999999999999988766655553

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.67  E-value=9.1e-16  Score=171.14  Aligned_cols=162  Identities=14%  Similarity=0.108  Sum_probs=112.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS  107 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~  107 (890)
                      ..|+|||.||||||||+++|++..   .+| |..++.......  .......+.+||+||...-    ..+...+ +.  
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~y-pfTT~~p~~G~v--~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh--  233 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADY-PFTTLHPNLGVV--RVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH--  233 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCC-CCceeCceEEEE--EeCCCcEEEEEeCCCccCCCCccccHHHHHHHH--
Confidence            458999999999999999999842   122 223333222111  1112237999999997532    2343343 21  


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +  ..++++|+|+|+++++++ +++..|.+++..+...                           ....|++||+||+|+
T Consensus       234 i--e~a~vlI~ViD~s~~~s~-e~~~~~~~EL~~~~~~---------------------------L~~kp~IIV~NKiDL  283 (335)
T PRK12299        234 I--ERTRLLLHLVDIEAVDPV-EDYKTIRNELEKYSPE---------------------------LADKPRILVLNKIDL  283 (335)
T ss_pred             h--hhcCEEEEEEcCCCCCCH-HHHHHHHHHHHHhhhh---------------------------cccCCeEEEEECccc
Confidence            1  248999999999998876 8888998888765332                           125899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ..     .........+.++...+..+++|||+++.|++++++.|...+.
T Consensus       284 ~~-----~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~  328 (335)
T PRK12299        284 LD-----EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLE  328 (335)
T ss_pred             CC-----chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            52     2222333455556667789999999999999999999988764

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.66  E-value=7e-16  Score=183.73  Aligned_cols=146  Identities=20%  Similarity=0.126  Sum_probs=104.2

Q ss_pred             cCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH------HhhhhccccccccC
Q psy11649         42 GTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV------ASLFSSFSLTAQSG  113 (890)
Q Consensus        42 Gd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L------i~~~r~~~~~~~~a  113 (890)
                      |++|||||||+|+|++..  ....|+++++........   .+..+++|||||++++...      ...+    +...++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~---~~~~i~lvDtPG~~~~~~~s~~e~v~~~~----l~~~~a   73 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF---QGEDIEIVDLPGIYSLTTFSLEEEVARDY----LLNEKP   73 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE---CCeEEEEEECCCccccCccchHHHHHHHH----HhhcCC
Confidence            899999999999999853  233477777754322222   2236899999999887443      2323    101148


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++++|+|.++.++   ++....+ +.                                ..++|+++|+||+|+.     
T Consensus        74 DvvI~VvDat~ler---~l~l~~q-l~--------------------------------~~~~PiIIVlNK~Dl~-----  112 (591)
T TIGR00437        74 DLVVNVVDASNLER---NLYLTLQ-LL--------------------------------ELGIPMILALNLVDEA-----  112 (591)
T ss_pred             CEEEEEecCCcchh---hHHHHHH-HH--------------------------------hcCCCEEEEEehhHHH-----
Confidence            99999999998654   2222221 11                                1268999999999985     


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       ++..+..+.+.+++.+|+++++|||++|.|++++++.+.+..
T Consensus       113 -~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       113 -EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             -HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence             233344567889999999999999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.66  E-value=2.2e-15  Score=156.38  Aligned_cols=168  Identities=19%  Similarity=0.239  Sum_probs=122.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+++|++|||||||+++|.+..  ..+.+|++..+.-....... ...++.+|||+|++++..+...|    +.  +
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~Dt~gq~~~~~~~~~y----~~--~   77 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYR-RNIKLQLWDTAGQEEYRSLRPEY----YR--G   77 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCC-CEEEEEeecCCCHHHHHHHHHHH----hc--C
Confidence            4899999999999999999999964  35778888665432222221 14479999999999999999888    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|.++..++.+....|.+.+.....                             ..+|+++|+||+|+.....
T Consensus        78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-----------------------------~~~~iilv~nK~Dl~~~~~  128 (219)
T COG1100          78 ANGILIVYDSTLRESSDELTEEWLEELRELAP-----------------------------DDVPILLVGNKIDLFDEQS  128 (219)
T ss_pred             CCEEEEEEecccchhhhHHHHHHHHHHHHhCC-----------------------------CCceEEEEecccccccchh
Confidence            99999999999977777888999987766432                             2589999999999974321


Q ss_pred             cch-------hhhhHHHHHHHHHHc---CCeEEEEecc--CCCCHHHHHHHHHHHHhc
Q psy11649        193 PNK-------KRIAVQCLRYLAHVN---GASLLFHSSL--DPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~-------r~~i~~~lr~la~~~---Ga~l~etSAK--~~~nId~Lk~~I~~~lf~  238 (890)
                      ...       +..........+...   ...++++|++  ++.++++++..+...+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~  186 (219)
T COG1100         129 SSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE  186 (219)
T ss_pred             HHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence            100       122222222222222   3338999999  999999998888777743

>cd04155 Arl3 Arl3 subfamily

Probab=99.66  E-value=2.5e-15  Score=149.86  Aligned_cols=151  Identities=15%  Similarity=0.188  Sum_probs=104.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ..++|+++|++|||||||+++|++... .+.++.|..+.  ....   .+..+.+||++|+..+...+..+    ++  +
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~---~~~~~~~~D~~G~~~~~~~~~~~----~~--~   81 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQS---DGFKLNVWDIGGQRAIRPYWRNY----FE--N   81 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE---CCEEEEEEECCCCHHHHHHHHHH----hc--C
Confidence            368999999999999999999998632 35567664421  2221   13479999999998776666655    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|++++.++ .....|+..+....                            ...++|+++++||+|+.... 
T Consensus        82 ~~~ii~v~D~~~~~~~-~~~~~~~~~~~~~~----------------------------~~~~~p~ivv~nK~D~~~~~-  131 (173)
T cd04155          82 TDCLIYVIDSADKKRL-EEAGAELVELLEEE----------------------------KLAGVPVLVFANKQDLATAA-  131 (173)
T ss_pred             CCEEEEEEeCCCHHHH-HHHHHHHHHHHhCh----------------------------hhcCCCEEEEEECCCCccCC-
Confidence            8999999999998877 55555554332211                            11268999999999985311 


Q ss_pred             cchhhhhHHHHHHHHHHcCC--------eEEEEeccCCCCHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGA--------SLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga--------~l~etSAK~~~nId~Lk~~I~~  234 (890)
                        .       ...++..+++        .++++||++|.|+++++++|.+
T Consensus       132 --~-------~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         132 --P-------AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             --C-------HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence              1       1122223332        4789999999999999888753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0073|consensus

Probab=99.65  E-value=3.7e-15  Score=146.65  Aligned_cols=163  Identities=20%  Similarity=0.224  Sum_probs=120.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+++|+++|..|+||||++++|.+. .+...||.|  |...+...   ....++|||++||..+++++..|    |.  +
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~g--f~Iktl~~---~~~~L~iwDvGGq~~lr~~W~nY----fe--s   83 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLG--FQIKTLEY---KGYTLNIWDVGGQKTLRSYWKNY----FE--S   83 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccc--eeeEEEEe---cceEEEEEEcCCcchhHHHHHHh----hh--c
Confidence            3789999999999999999999996 345567777  33333332   23489999999999999999999    33  6


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      .|++|.|+|.+++.++.+.    .+.+++.+.+                         .+-.|.|++|++||.|+...++
T Consensus        84 tdglIwvvDssD~~r~~e~----~~~L~~lL~e-------------------------erlaG~~~Lvlank~dl~~~l~  134 (185)
T KOG0073|consen   84 TDGLIWVVDSSDRMRMQEC----KQELTELLVE-------------------------ERLAGAPLLVLANKQDLPGALS  134 (185)
T ss_pred             cCeEEEEEECchHHHHHHH----HHHHHHHHhh-------------------------hhhcCCceEEEEecCcCccccC
Confidence            9999999999999887222    2222222211                         1223789999999999964444


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .+.-. ..-.+..++++..+.++-|||.+|+++.+-.+++.+.+.
T Consensus       135 ~~~i~-~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~  178 (185)
T KOG0073|consen  135 LEEIS-KALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM  178 (185)
T ss_pred             HHHHH-HhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence            32221 124567777888899999999999998888888877764

>PTZ00099 rab6; Provisional

Probab=99.65  E-value=2.4e-15  Score=153.06  Aligned_cols=138  Identities=10%  Similarity=0.097  Sum_probs=109.0

Q ss_pred             CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHH
Q psy11649         59 NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAK  138 (890)
Q Consensus        59 ~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~  138 (890)
                      .+.+.||+|.+|.-.... .......++||||+|++++..+...+    ++  ++|++|+|||++++.+| +.+..|+..
T Consensus         6 ~~~~~~Tig~~~~~~~~~-~~~~~v~l~iwDt~G~e~~~~~~~~~----~~--~ad~~ilv~D~t~~~sf-~~~~~w~~~   77 (176)
T PTZ00099          6 DNNYQSTIGIDFLSKTLY-LDEGPVRLQLWDTAGQERFRSLIPSY----IR--DSAAAIVVYDITNRQSF-ENTTKWIQD   77 (176)
T ss_pred             CCCCCCccceEEEEEEEE-ECCEEEEEEEEECCChHHhhhccHHH----hC--CCcEEEEEEECCCHHHH-HHHHHHHHH
Confidence            356889999887432222 22223489999999999998888877    33  69999999999999998 888889887


Q ss_pred             HHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649        139 FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS  218 (890)
Q Consensus       139 I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS  218 (890)
                      +.+..                             ..++|++|||||+|+..     .+.+...++..++..+++.+++||
T Consensus        78 i~~~~-----------------------------~~~~piilVgNK~DL~~-----~~~v~~~e~~~~~~~~~~~~~e~S  123 (176)
T PTZ00099         78 ILNER-----------------------------GKDVIIALVGNKTDLGD-----LRKVTYEEGMQKAQEYNTMFHETS  123 (176)
T ss_pred             HHHhc-----------------------------CCCCeEEEEEECccccc-----ccCCCHHHHHHHHHHcCCEEEEEE
Confidence            75431                             12589999999999852     345556677888888999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHhc
Q psy11649        219 SLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       219 AK~~~nId~Lk~~I~~~lf~  238 (890)
                      |++|.|++++++.|...+..
T Consensus       124 Ak~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        124 AKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999988744

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.65  E-value=6.6e-15  Score=141.05  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=109.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ  111 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~  111 (890)
                      .+||+++|.+|||||||+++|++..  ..+.++++.++........ .....+.+||+||+..+..+...+ +       
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~-------   72 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-GKTYKFNLLDTAGQEDYRAIRRLYYR-------   72 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-CEEEEEEEEECCCcccchHHHHHHHh-------
Confidence            3689999999999999999999864  2445677766543222211 111478999999998887777666 2       


Q ss_pred             cCcEEEEEEeCCCc-CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp-~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      +++.++.++|++.. .++.+....|...+......                             ++|+++|+||+|+.. 
T Consensus        73 ~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-----------------------------~~p~ivv~nK~D~~~-  122 (161)
T TIGR00231        73 AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-----------------------------NVPIILVGNKIDLRD-  122 (161)
T ss_pred             hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-----------------------------CCcEEEEEEcccCCc-
Confidence            37889999999887 66633334666555443211                             589999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                           .....+....+....+.+++++||+++.|+++++++|.
T Consensus       123 -----~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       123 -----AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             -----chhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence                 11233334444444567899999999999999988764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.64  E-value=2.5e-15  Score=152.51  Aligned_cols=160  Identities=18%  Similarity=0.228  Sum_probs=110.5

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .+..+|+++|.+|||||||+++|..+. ..+.||+|.+..  ....   .+..+++||++|+.+++.++..|    +.  
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~---~~~~~~~~d~gG~~~~~~~w~~y----~~--   80 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKY---KGYSLTIWDLGGQESFRPLWKSY----FQ--   80 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEE---TTEEEEEEEESSSGGGGGGGGGG----HT--
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeee---CcEEEEEEeccccccccccceee----cc--
Confidence            347899999999999999999999753 356788885532  2222   34479999999999999999888    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++|+|+|.++++++ ....       +.+.+++..                     ....++|++|++||+|+....
T Consensus        81 ~~~~iIfVvDssd~~~l-~e~~-------~~L~~ll~~---------------------~~~~~~piLIl~NK~D~~~~~  131 (175)
T PF00025_consen   81 NADGIIFVVDSSDPERL-QEAK-------EELKELLND---------------------PELKDIPILILANKQDLPDAM  131 (175)
T ss_dssp             TESEEEEEEETTGGGGH-HHHH-------HHHHHHHTS---------------------GGGTTSEEEEEEESTTSTTSS
T ss_pred             ccceeEEEEecccceee-cccc-------cchhhhcch---------------------hhcccceEEEEeccccccCcc
Confidence            58999999999999887 2222       222222210                     111268999999999985332


Q ss_pred             CcchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       192 d~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +.++   +...  +..+.....+.++.|||++|.|+++..++|...
T Consensus       132 ~~~~---i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  132 SEEE---IKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             THHH---HHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             hhhH---HHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence            2111   1111  111111234569999999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK04213 GTP-binding protein; Provisional

Probab=99.64  E-value=2.5e-15  Score=154.46  Aligned_cols=153  Identities=16%  Similarity=0.167  Sum_probs=97.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCC-----------CcchhhHH
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGS-----------GTSRLEVA  100 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG-----------~~~~~~Li  100 (890)
                      ...+|+++|.+|||||||+|+|++...  .+.|+++.+.    ......   .+.+|||||           +++++.++
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~----~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP----NHYDWG---DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc----eEEeec---ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            467999999999999999999998643  2334444321    111111   589999999           34555554


Q ss_pred             hhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHH--------HHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649        101 SLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLA--------KFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus       101 ~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq--------~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                      ..+ +....   .++++++|+|.+...++   +..|.+        .+...+                            
T Consensus        81 ~~~~~~~~~---~~~~vi~v~d~~~~~~~---~~~~~~~~~~~~~~~l~~~~----------------------------  126 (201)
T PRK04213         81 VRYIEDNAD---RILAAVLVVDGKSFIEI---IERWEGRGEIPIDVEMFDFL----------------------------  126 (201)
T ss_pred             HHHHHhhhh---hheEEEEEEeCcccccc---ccccccCCCcHHHHHHHHHH----------------------------
Confidence            444 21111   26788888887653221   123321        011111                            


Q ss_pred             cCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---------eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        172 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---------SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---------~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ...++|+++|+||+|+..     .+   .+.+.+++..+|+         .+++|||++| |++++++.|...+
T Consensus       127 ~~~~~p~iiv~NK~Dl~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~  191 (201)
T PRK04213        127 RELGIPPIVAVNKMDKIK-----NR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRL  191 (201)
T ss_pred             HHcCCCeEEEEECccccC-----cH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence            113689999999999852     11   2345566666665         4899999999 9999999998875

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.63  E-value=2.9e-15  Score=166.81  Aligned_cols=160  Identities=16%  Similarity=0.146  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS  107 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~  107 (890)
                      ..|+|||.||||||||+++|++..   .+| |..++........  ......+.|||+||....    ..+...+ +.  
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y-~fTT~~p~ig~v~--~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh--  232 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADY-PFTTLVPNLGVVR--VDDGRSFVIADIPGLIEGASEGAGLGHRFLKH--  232 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCC-CCCccCCEEEEEE--eCCceEEEEEeCCCcccCCcccccHHHHHHHH--
Confidence            568999999999999999999842   122 2222221111111  111247999999997532    2344344 22  


Q ss_pred             cccccCcEEEEEEeCCCc---CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649        108 LTAQSGFTLVLMLDLSRL---NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK  184 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp---~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK  184 (890)
                      +  ..++++|+|+|+++.   ..+ +++..|.+++..+...                           ....|++||+||
T Consensus       233 i--erad~ll~VvD~s~~~~~~~~-e~l~~l~~EL~~~~~~---------------------------l~~kp~IIV~NK  282 (329)
T TIGR02729       233 I--ERTRVLLHLIDISPLDGRDPI-EDYEIIRNELKKYSPE---------------------------LAEKPRIVVLNK  282 (329)
T ss_pred             H--HhhCEEEEEEcCccccccCHH-HHHHHHHHHHHHhhhh---------------------------hccCCEEEEEeC
Confidence            1  148999999999986   444 7788888777654322                           125899999999


Q ss_pred             ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+..     . ....+..+.++..++..++++||+++.|++++++.|...+
T Consensus       283 ~DL~~-----~-~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       283 IDLLD-----E-EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             ccCCC-----h-HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            99852     2 2234556677777788999999999999999999987754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.63  E-value=7.5e-15  Score=171.11  Aligned_cols=185  Identities=17%  Similarity=0.128  Sum_probs=117.6

Q ss_pred             CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649          2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK   78 (890)
Q Consensus         2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~   78 (890)
                      |.++|.+.+.+.+.+..... .       ......+|+|+|.+|||||||+|+|++..   ....++++.+........ 
T Consensus       186 gi~eL~~~i~~~l~~~~~~~-~-------~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~-  256 (472)
T PRK03003        186 GVGDLLDAVLAALPEVPRVG-S-------ASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL-  256 (472)
T ss_pred             CcHHHHHHHHhhcccccccc-c-------ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE-
Confidence            56678888877764421110 0       01235899999999999999999999864   244567776643222221 


Q ss_pred             cccceEEEEEEcCCCcchh------hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649         79 TVMKDICHLWELGSGTSRL------EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE  151 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~------~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~  151 (890)
                        .+..+.+|||||..+..      ...... +...++  ++|++|+|+|+++..++ ..+ .++..+.           
T Consensus       257 --~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~--~ad~vilV~Da~~~~s~-~~~-~~~~~~~-----------  319 (472)
T PRK03003        257 --GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIE--AAEVAVVLIDASEPISE-QDQ-RVLSMVI-----------  319 (472)
T ss_pred             --CCEEEEEEECCCccccccccchHHHHHHHHHHHHHh--cCCEEEEEEeCCCCCCH-HHH-HHHHHHH-----------
Confidence              22367899999964221      111111 111122  59999999999998886 333 2332221           


Q ss_pred             hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHH-HHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649        152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSSLDPGLVKRTRD  230 (890)
Q Consensus       152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr-~la~~~Ga~l~etSAK~~~nId~Lk~  230 (890)
                                           ..++|++||+||+|+..   .+.+....++++ .++....+++++|||++|.|++++++
T Consensus       320 ---------------------~~~~piIiV~NK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~  375 (472)
T PRK03003        320 ---------------------EAGRALVLAFNKWDLVD---EDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVP  375 (472)
T ss_pred             ---------------------HcCCCEEEEEECcccCC---hhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHH
Confidence                                 12689999999999962   112222333333 33333457899999999999999999


Q ss_pred             HHHHHH
Q psy11649        231 ILNHYA  236 (890)
Q Consensus       231 ~I~~~l  236 (890)
                      .|...+
T Consensus       376 ~i~~~~  381 (472)
T PRK03003        376 ALETAL  381 (472)
T ss_pred             HHHHHH
Confidence            998775

>TIGR00436 era GTP-binding protein Era

Probab=99.62  E-value=7.4e-15  Score=159.10  Aligned_cols=155  Identities=15%  Similarity=0.099  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-h----hHHhhhhcccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-L----EVASLFSSFSL  108 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~----~Li~~~r~~~~  108 (890)
                      +|+|+|.+|||||||+|+|++...   ..+|.++.+... ..  ....+.++.+|||||.... .    .+...+ ...+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i--~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~-~~~l   77 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GI--HTTGASQIIFIDTPGFHEKKHSLNRLMMKEA-RSAI   77 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EE--EEcCCcEEEEEECcCCCCCcchHHHHHHHHH-HHHH
Confidence            699999999999999999999632   334444444211 11  1112237999999997542 1    122212 1112


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      .  ++|++++|+|.++..+.  . ..+++.+.                                ..++|+++|+||+|+.
T Consensus        78 ~--~aDvvl~VvD~~~~~~~--~-~~i~~~l~--------------------------------~~~~p~ilV~NK~Dl~  120 (270)
T TIGR00436        78 G--GVDLILFVVDSDQWNGD--G-EFVLTKLQ--------------------------------NLKRPVVLTRNKLDNK  120 (270)
T ss_pred             h--hCCEEEEEEECCCCCch--H-HHHHHHHH--------------------------------hcCCCEEEEEECeeCC
Confidence            2  59999999999997775  2 33333221                                1258999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .      +.........++...+. .++++||++|.|+++++++|...+..
T Consensus       121 ~------~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~  165 (270)
T TIGR00436       121 F------KDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE  165 (270)
T ss_pred             C------HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence            2      22233445566665554 79999999999999999999988743

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG1486|consensus

Probab=99.62  E-value=3.2e-15  Score=155.59  Aligned_cols=246  Identities=15%  Similarity=0.097  Sum_probs=171.4

Q ss_pred             CCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---e-ccccceEEEEEEcCCCc
Q psy11649         19 PSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---G-KTVMKDICHLWELGSGT   94 (890)
Q Consensus        19 ~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g-~~~~k~~l~IwDlpG~~   94 (890)
                      +..+++++++...+.+..+|++||-|+||||||+..++...    +. +..|.|++.+   | ....+..+++.|+||..
T Consensus        46 ~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~----Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIi  120 (364)
T KOG1486|consen   46 KGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLSKITSTH----SE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGII  120 (364)
T ss_pred             CCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHHHhhcch----hh-hhceeeeEEEeecceEEecCceEEEecCcccc
Confidence            33444677899999999999999999999999999999832    22 2357777766   3 22233489999999975


Q ss_pred             ch--------hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHh----------------------
Q psy11649         95 SR--------LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFE----------------------  144 (890)
Q Consensus        95 ~~--------~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~----------------------  144 (890)
                      +.        ++++...|.       +|.|++|+|.+..+.--..|++-++.+.-.+.                      
T Consensus       121 eGAsqgkGRGRQviavArt-------aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~  193 (364)
T KOG1486|consen  121 EGASQGKGRGRQVIAVART-------ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTV  193 (364)
T ss_pred             cccccCCCCCceEEEEeec-------ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeee
Confidence            43        344444333       99999999999977653456666665542211                      


Q ss_pred             -----------hhhhhh---hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc
Q psy11649        145 -----------SNESVR---EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN  210 (890)
Q Consensus       145 -----------~ll~~~---~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~  210 (890)
                                 .++-++   ++..-+++..+.+++.|....+...++++-|-||+|..          ..++..++|++-
T Consensus       194 ~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~v----------s~eevdrlAr~P  263 (364)
T KOG1486|consen  194 PLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQV----------SIEEVDRLARQP  263 (364)
T ss_pred             ccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeecccee----------cHHHHHHHhcCC
Confidence                       111122   33334555556666666655667789999999999975          245677888775


Q ss_pred             CCeEEEEeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CCCCCCccccccccccccch
Q psy11649        211 GASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGKDASLESGGRGFNRSRGM  289 (890)
Q Consensus       211 Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~~~~~~~~~~~~~~~~~~  289 (890)
                      +.  +-+|+..+-|++.+.+.|-..+-           ..+.+..+.|.-.  ..+.|+ +|++++.++++.++|+++..
T Consensus       264 ns--vViSC~m~lnld~lle~iWe~l~-----------L~rvYtKk~g~~P--dfdd~~vlr~g~tve~~C~~iHr~l~~  328 (364)
T KOG1486|consen  264 NS--VVISCNMKLNLDRLLERIWEELN-----------LVRVYTKKKGQRP--DFDDPLVLRKGSTVEDVCHRIHRTLAA  328 (364)
T ss_pred             Cc--EEEEeccccCHHHHHHHHHHHhc-----------eEEEEecCCCCCC--CCCCceEEeCCCcHHHHHHHHHHHHHH
Confidence            54  44688888999999998877762           2222233333222  134567 89999999999999999999


Q ss_pred             hHHHhhcccccc
Q psy11649        290 KFEKKRGWIEGT  301 (890)
Q Consensus       290 ~f~~~~~w~~~~  301 (890)
                      .|+++.+|-.+.
T Consensus       329 qfkyAlVWGtSa  340 (364)
T KOG1486|consen  329 QFKYALVWGTSA  340 (364)
T ss_pred             hhceeeEecccc
Confidence            999999995443

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.61  E-value=1.4e-14  Score=143.08  Aligned_cols=156  Identities=12%  Similarity=0.006  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      .|+|+|.+|||||||+++|++....  +.++.+.++...........+..+.+|||||+..+..+....    +.  .+|
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~----~~--~~d   75 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARG----AS--LTD   75 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHH----Hh--hcC
Confidence            5899999999999999999985432  223334333222222211123479999999998877766555    11  499


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++++|+|+++.... .... .+..++                                ..++|+++|+||+|+....   
T Consensus        76 ~il~v~d~~~~~~~-~~~~-~~~~~~--------------------------------~~~~p~ivv~NK~Dl~~~~---  118 (168)
T cd01887          76 IAILVVAADDGVMP-QTIE-AIKLAK--------------------------------AANVPFIVALNKIDKPNAN---  118 (168)
T ss_pred             EEEEEEECCCCccH-HHHH-HHHHHH--------------------------------HcCCCEEEEEEceeccccc---
Confidence            99999999985432 1111 111111                                1268999999999985211   


Q ss_pred             hhhhhHHHHHHHHH----H--cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAH----V--NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       195 ~r~~i~~~lr~la~----~--~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ... ....+..+..    .  .+++++++||+++.|+++++++|....
T Consensus       119 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         119 PER-VKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             HHH-HHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence            111 1122222211    1  236799999999999999999998764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.61  E-value=8.4e-15  Score=143.07  Aligned_cols=147  Identities=19%  Similarity=0.144  Sum_probs=101.4

Q ss_pred             EEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh------HHhhh-hcccccc
Q psy11649         40 LIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE------VASLF-SSFSLTA  110 (890)
Q Consensus        40 LVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~------Li~~~-r~~~~~~  110 (890)
                      |+|.+|||||||++++++..  ..+.++++++.........   +..+.+|||||+..+..      +...+ ..     
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-----   72 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG---GKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-----   72 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC---CeEEEEEECCCccccCCCChhHHHHHHHhcC-----
Confidence            58999999999999999863  2334666655433222221   23799999999876543      23333 11     


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .++|++|+|+|.+++.+.    ..|...+.+                                .++|+++|+||+|+...
T Consensus        73 ~~~d~vi~v~d~~~~~~~----~~~~~~~~~--------------------------------~~~~~iiv~NK~Dl~~~  116 (158)
T cd01879          73 EKPDLIVNVVDATNLERN----LYLTLQLLE--------------------------------LGLPVVVALNMIDEAEK  116 (158)
T ss_pred             CCCcEEEEEeeCCcchhH----HHHHHHHHH--------------------------------cCCCEEEEEehhhhccc
Confidence            149999999999986542    233332211                                25899999999999531


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                            ..+......++..++++++++||+++.|++++++.+...+
T Consensus       117 ------~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         117 ------RGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             ------ccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence                  1122334577778899999999999999999998887653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.61  E-value=1e-14  Score=163.84  Aligned_cols=157  Identities=17%  Similarity=0.129  Sum_probs=103.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc--hhhHHhhh--hccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS--RLEVASLF--SSFS  107 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~--~~~Li~~~--r~~~  107 (890)
                      ...+|+++|.+|||||||+|+|++...  ...+..++++......  ...+..+.+|||+|..+  -..+...+  +.+.
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~--~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLD--LPDGGEVLLTDTVGFIRDLPHELVAAFRATLEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEE--eCCCceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            357999999999999999999999642  1224444554432222  22234799999999732  23333333  1111


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +.  ++|++++|+|++++.+. +.+..|.+.+.+.                             ...++|+++|+||+|+
T Consensus       266 ~~--~ADlil~VvD~s~~~~~-~~~~~~~~~L~~l-----------------------------~~~~~piIlV~NK~Dl  313 (351)
T TIGR03156       266 VR--EADLLLHVVDASDPDRE-EQIEAVEKVLEEL-----------------------------GAEDIPQLLVYNKIDL  313 (351)
T ss_pred             HH--hCCEEEEEEECCCCchH-HHHHHHHHHHHHh-----------------------------ccCCCCEEEEEEeecC
Confidence            22  59999999999999876 5566665544331                             1125799999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      ..     ...     ...+.. ....++++||+++.|+++|++.|...
T Consensus       314 ~~-----~~~-----v~~~~~-~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       314 LD-----EPR-----IERLEE-GYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CC-----hHh-----HHHHHh-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence            52     111     111111 22468999999999999999988654

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.61  E-value=5e-15  Score=147.94  Aligned_cols=141  Identities=18%  Similarity=0.125  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHH-hhhhccccccccCcE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVA-SLFSSFSLTAQSGFT  115 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li-~~~r~~~~~~~~ad~  115 (890)
                      +|+++|.+|||||||+|+|.+......++.+++|.         ..   .+|||||.+...... ..... .++  ++|+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~v~~~---------~~---~~iDtpG~~~~~~~~~~~~~~-~~~--~ad~   67 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVEFN---------DK---GDIDTPGEYFSHPRWYHALIT-TLQ--DVDM   67 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccCccceEEEEC---------CC---CcccCCccccCCHHHHHHHHH-HHh--cCCE
Confidence            79999999999999999998754333344443321         11   379999985332111 11100 022  4999


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +++|+|.++..++   +..|+..+                                 ..+.|+++|+||+|+..      
T Consensus        68 il~v~d~~~~~s~---~~~~~~~~---------------------------------~~~~~ii~v~nK~Dl~~------  105 (158)
T PRK15467         68 LIYVHGANDPESR---LPAGLLDI---------------------------------GVSKRQIAVISKTDMPD------  105 (158)
T ss_pred             EEEEEeCCCcccc---cCHHHHhc---------------------------------cCCCCeEEEEEccccCc------
Confidence            9999999998875   22343211                                 12579999999999842      


Q ss_pred             hhhhHHHHHHHHHHcCC--eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        196 KRIAVQCLRYLAHVNGA--SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       196 r~~i~~~lr~la~~~Ga--~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .  ..+.+.+++...++  ++++|||+++.|+++++++|...+
T Consensus       106 ~--~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~  146 (158)
T PRK15467        106 A--DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLT  146 (158)
T ss_pred             c--cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence            1  12446677777775  899999999999999999998775

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.60  E-value=2.7e-13  Score=153.06  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=98.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh--hHHhhh---hcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL--EVASLF---SSF  106 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~--~Li~~~---r~~  106 (890)
                      ..|++||.||||||||+|||+++.    .++ |+++-|-.|....  .. ...+.+.||+|.+...  .+....   ...
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~-pGvTRDr~y~~~~--~~-~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT-PGVTRDRIYGDAE--WL-GREFILIDTGGLDDGDEDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecC-CCCccCCccceeE--Ec-CceEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence            579999999999999999999963    344 7888773332222  11 2269999999986432  222222   111


Q ss_pred             ccccccCcEEEEEEeCCCcCc-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S-~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      .+.  .||++|+|+|....-+ ..+.+..|+.                                   ..+.|+++|+||+
T Consensus        80 Ai~--eADvilfvVD~~~Git~~D~~ia~~Lr-----------------------------------~~~kpviLvvNK~  122 (444)
T COG1160          80 AIE--EADVILFVVDGREGITPADEEIAKILR-----------------------------------RSKKPVILVVNKI  122 (444)
T ss_pred             HHH--hCCEEEEEEeCCCCCCHHHHHHHHHHH-----------------------------------hcCCCEEEEEEcc
Confidence            111  4999999999887333 2123333332                                   1258999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |-.+     ..    ....+ ..++|. ..+.+||-.|.|+..|.+.+...+
T Consensus       123 D~~~-----~e----~~~~e-fyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         123 DNLK-----AE----ELAYE-FYSLGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             cCch-----hh----hhHHH-HHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence            9741     11    11222 234564 489999999999999999998876

>PRK15494 era GTPase Era; Provisional

Probab=99.59  E-value=2.7e-14  Score=159.82  Aligned_cols=161  Identities=19%  Similarity=0.178  Sum_probs=103.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhh-h--c
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLF-S--S  105 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~-r--~  105 (890)
                      .+..+|+++|++|||||||+|+|++...   .+++..+.++......   ..+.++.+|||||... +..+.... +  .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~---~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~  126 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT---LKDTQVILYDTPGIFEPKGSLEKAMVRCAW  126 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE---eCCeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence            4456999999999999999999998643   2334444332221111   1234799999999843 22222221 1  1


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      ..+.  ++|++++|+|.++.-.  +....|++.+++                                .+.|.++|+||+
T Consensus       127 ~~l~--~aDvil~VvD~~~s~~--~~~~~il~~l~~--------------------------------~~~p~IlViNKi  170 (339)
T PRK15494        127 SSLH--SADLVLLIIDSLKSFD--DITHNILDKLRS--------------------------------LNIVPIFLLNKI  170 (339)
T ss_pred             HHhh--hCCEEEEEEECCCCCC--HHHHHHHHHHHh--------------------------------cCCCEEEEEEhh
Confidence            1133  6999999999776322  222334443321                                146788999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFSSH  240 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf~~~  240 (890)
                      |+..     .  . ...+.+++...+  ..++++||++|.|+++++++|...+...+
T Consensus       171 Dl~~-----~--~-~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        171 DIES-----K--Y-LNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             cCcc-----c--c-HHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence            9842     1  1 234445554443  57999999999999999999998875433

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.59  E-value=1.9e-14  Score=147.63  Aligned_cols=148  Identities=15%  Similarity=0.067  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC--CC--CC------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK--ND--TP------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV   99 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~--~~--~~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L   99 (890)
                      .+|+++|++|||||||+++|++.  ..  .+            .++.|.++...... .......+++|||||+++|...
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTA-VTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeE-EEECCEEEEEEECCCcHHHHHH
Confidence            58999999999999999999972  11  11            11233322111111 1122348999999999998887


Q ss_pred             HhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE
Q psy11649        100 ASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI  179 (890)
Q Consensus       100 i~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI  179 (890)
                      ...+    ++  ++|++++|+|+++...  .....|+..+.                                ..++|++
T Consensus        82 ~~~~----~~--~~d~~ilV~d~~~~~~--~~~~~~~~~~~--------------------------------~~~~p~i  121 (194)
T cd01891          82 VERV----LS--MVDGVLLLVDASEGPM--PQTRFVLKKAL--------------------------------ELGLKPI  121 (194)
T ss_pred             HHHH----HH--hcCEEEEEEECCCCcc--HHHHHHHHHHH--------------------------------HcCCCEE
Confidence            7777    22  4999999999998432  23333332221                                1268999


Q ss_pred             EEeecccCCCCCCcchhhhhHHHHHHHHH-------HcCCeEEEEeccCCCCHHHH
Q psy11649        180 LIGGKYDLFENLEPNKKRIAVQCLRYLAH-------VNGASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       180 VVgNK~Dl~~d~d~e~r~~i~~~lr~la~-------~~Ga~l~etSAK~~~nId~L  228 (890)
                      +|+||+|+..    ........+++.+..       ..+++++++||++|.|+.++
T Consensus       122 iv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         122 VVINKIDRPD----ARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             EEEECCCCCC----CCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            9999999852    112223344444442       34788999999999888554

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.58  E-value=4.9e-14  Score=141.50  Aligned_cols=154  Identities=14%  Similarity=0.024  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhh
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE   98 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~   98 (890)
                      +|+|+|.+|+|||||+|+|++.....                  ..++++++.+.....   ....+.+||+||...+..
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~liDtpG~~~~~~   77 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW---PDRRVNFIDTPGHEDFSS   77 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee---CCEEEEEEeCCCcHHHHH
Confidence            48999999999999999999853321                  112233322211111   134799999999987766


Q ss_pred             HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649         99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus        99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      ....+    ++  ++|++++|+|.+++.+.  ....++..+..                                .++|+
T Consensus        78 ~~~~~----~~--~~d~~i~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~~i  117 (189)
T cd00881          78 EVIRG----LS--VSDGAILVVDANEGVQP--QTREHLRIARE--------------------------------GGLPI  117 (189)
T ss_pred             HHHHH----HH--hcCEEEEEEECCCCCcH--HHHHHHHHHHH--------------------------------CCCCe
Confidence            65555    11  49999999999987664  33333332221                                25899


Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHHHHHH--------------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--------------NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~--------------~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+||+|+..   ++........+++....              .+.+++++||+++.|++++++.|.+.+
T Consensus       118 ~iv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         118 IVAINKIDRVG---EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             EEEEECCCCcc---hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            99999999963   12222233344444433              357799999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.57  E-value=2.4e-14  Score=142.38  Aligned_cols=162  Identities=18%  Similarity=0.133  Sum_probs=100.4

Q ss_pred             EEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhhhcccccccc
Q psy11649         40 LIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLFSSFSLTAQS  112 (890)
Q Consensus        40 LVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~r~~~~~~~~  112 (890)
                      |+|++|||||||+|+|++..   .++ +..+.+..+....  ......+.+||+||....    +.+...+. ..++  +
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~-~~~t~~~~~~~~~--~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~-~~~~--~   74 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANY-PFTTLEPNLGVVE--VPDGARIQVADIPGLIEGASEGRGLGNQFL-AHIR--R   74 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCC-CceeecCcceEEE--cCCCCeEEEEeccccchhhhcCCCccHHHH-HHHh--c
Confidence            58999999999999999863   222 2222222221111  111347999999997421    22221210 0012  4


Q ss_pred             CcEEEEEEeCCCcC------chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        113 GFTLVLMLDLSRLN------SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       113 ad~IIIV~DlSnp~------S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      ++++++|+|.+++.      ++ +.+..|...+........                      .....++|+++|+||+|
T Consensus        75 ~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------------~~~~~~~p~ivv~NK~D  131 (176)
T cd01881          75 ADAILHVVDASEDDDIGGVDPL-EDYEILNAELKLYDLETI----------------------LGLLTAKPVIYVLNKID  131 (176)
T ss_pred             cCEEEEEEeccCCccccccCHH-HHHHHHHHHHHHhhhhhH----------------------HHHHhhCCeEEEEEchh
Confidence            89999999999984      44 677777776654321100                      00012589999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +..     ............+...+..++++||+++.|++++.+.+.++
T Consensus       132 l~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         132 LDD-----AEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCc-----hhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            852     22211111334455567789999999999999999888764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.57  E-value=3.5e-14  Score=162.56  Aligned_cols=156  Identities=18%  Similarity=0.200  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---ec--cccceEEEEEEcCCCcc----hhhHHhhh-hcc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GK--TVMKDICHLWELGSGTS----RLEVASLF-SSF  106 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~--~~~k~~l~IwDlpG~~~----~~~Li~~~-r~~  106 (890)
                      .|+|||.||||||||+++|++..    +.++ +|.|++..   +.  ......+.+||+||...    ...+...+ +. 
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak----~kIa-~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrh-  233 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK----PKIA-NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRH-  233 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC----Cccc-cCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHH-
Confidence            79999999999999999999843    2222 23222222   11  11133799999999743    22344444 22 


Q ss_pred             ccccccCcEEEEEEeCCCc---CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        107 SLTAQSGFTLVLMLDLSRL---NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp---~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                       +  ..++++|+|+|+++.   ..+ +++..|.+++..+...                           ....|++||+|
T Consensus       234 -i--er~~llI~VID~s~~~~~dp~-e~~~~i~~EL~~y~~~---------------------------L~~kP~IVV~N  282 (424)
T PRK12297        234 -I--ERTRVIVHVIDMSGSEGRDPI-EDYEKINKELKLYNPR---------------------------LLERPQIVVAN  282 (424)
T ss_pred             -H--hhCCEEEEEEeCCccccCChH-HHHHHHHHHHhhhchh---------------------------ccCCcEEEEEe
Confidence             1  148999999999875   343 6777777776654322                           12589999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |+|+..     .    .+.+..++..++.+++++||+++.|+++|.+.|...+..
T Consensus       283 K~DL~~-----~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        283 KMDLPE-----A----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             CCCCcC-----C----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999731     1    234566777777889999999999999999999888754

>cd01889 SelB_euk SelB subfamily

Probab=99.57  E-value=4e-14  Score=145.06  Aligned_cols=157  Identities=15%  Similarity=0.122  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC------CC---CCCCCccceeEEEEEEec-----------cccceEEEEEEcCCCcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK------ND---TPKPTLALEYIYARKSGK-----------TVMKDICHLWELGSGTS   95 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~------~~---~~kptigvdY~f~~~~g~-----------~~~k~~l~IwDlpG~~~   95 (890)
                      ++|+++|++|||||||+++|++.      +.   ...++++.+..+......           ...+..+++|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999999973      11   112233333322222211           11134899999999865


Q ss_pred             hhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         96 RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        96 ~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      +   ...+ +.  .  ..+|++++|+|.++..+. .....+..  ..                               ..
T Consensus        81 ~---~~~~~~~--~--~~~d~vi~VvD~~~~~~~-~~~~~~~~--~~-------------------------------~~  119 (192)
T cd01889          81 L---IRTIIGG--A--QIIDLMLLVVDATKGIQT-QTAECLVI--GE-------------------------------IL  119 (192)
T ss_pred             H---HHHHHHH--H--hhCCEEEEEEECCCCccH-HHHHHHHH--HH-------------------------------Hc
Confidence            4   2222 11  1  137999999999985543 22222210  00                               12


Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHH-HHH------HcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAH------VNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~------~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+++|+||+|+...   +.+....+.+++ +..      ..+++++++||+++.|+++|++++.+.+
T Consensus       120 ~~~~iiv~NK~Dl~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         120 CKKLIVVLNKIDLIPE---EERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CCCEEEEEECcccCCH---HHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence            5799999999998621   122222222222 211      1367899999999999999999998876

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.56  E-value=3e-14  Score=151.48  Aligned_cols=181  Identities=15%  Similarity=0.052  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh----hHHhhhhccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----EVASLFSSFSLT  109 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----~Li~~~r~~~~~  109 (890)
                      +|+++|.+|||||||+++|++...   ++ +..+++.......   ..+..+++||+||..+..    .+.... ...++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~-~~tT~~~~~g~~~---~~~~~i~l~DtpG~~~~~~~~~~~~~~~-l~~~~   76 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAY-EFTTLTCVPGVLE---YKGAKIQLLDLPGIIEGAADGKGRGRQV-IAVAR   76 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCC-CCccccceEEEEE---ECCeEEEEEECCCcccccccchhHHHHH-HHhhc
Confidence            799999999999999999998532   22 2222221111111   123479999999986432    111111 01122


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHH---------------------------------HHHhhhhhhh---hhc
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFR---------------------------------AIFESNESVR---EKR  153 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~---------------------------------e~~~~ll~~~---~~~  153 (890)
                        ++|++++|+|++++....+.+...++...                                 +.+..++.++   ++.
T Consensus        77 --~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~  154 (233)
T cd01896          77 --TADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNAD  154 (233)
T ss_pred             --cCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEE
Confidence              59999999999987642233333332111                                 1111111111   222


Q ss_pred             cccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        154 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       154 ~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                      +.+++.++.++..|....+...+|+++|+||+|+..     .     .++..++..  ..++++||+++.|++++++.|.
T Consensus       155 v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~-----~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~  222 (233)
T cd01896         155 VLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----I-----EELDLLARQ--PNSVVISAEKGLNLDELKERIW  222 (233)
T ss_pred             EEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----H-----HHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHH
Confidence            223333344444444444556799999999999852     1     223345544  3589999999999999999998


Q ss_pred             HHH
Q psy11649        234 HYA  236 (890)
Q Consensus       234 ~~l  236 (890)
                      ..+
T Consensus       223 ~~L  225 (233)
T cd01896         223 DKL  225 (233)
T ss_pred             HHh
Confidence            765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.56  E-value=5e-14  Score=162.66  Aligned_cols=151  Identities=16%  Similarity=0.156  Sum_probs=105.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF  106 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~  106 (890)
                      ..++|+++|.+|||||||+|+|++...   ...|+++.++.......   .+..+++|||||...+...+...    ...
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~---~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL---NGILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE---CCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            357999999999999999999998532   33466666643322221   23468999999987655443221    111


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .++  ++|++++|+|++++.++ +..  |+..+.                                ..++|+++|+||+|
T Consensus       279 ~~~--~aD~il~V~D~s~~~s~-~~~--~l~~~~--------------------------------~~~~piIlV~NK~D  321 (442)
T TIGR00450       279 AIK--QADLVIYVLDASQPLTK-DDF--LIIDLN--------------------------------KSKKPFILVLNKID  321 (442)
T ss_pred             HHh--hCCEEEEEEECCCCCCh-hHH--HHHHHh--------------------------------hCCCCEEEEEECcc
Confidence            223  59999999999999886 333  554321                                12579999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +..     .      ....++..++.+++++||++ .|++++++.+...+
T Consensus       322 l~~-----~------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       322 LKI-----N------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             CCC-----c------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence            852     1      12345667788899999998 68888888887766

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.56  E-value=9.1e-14  Score=134.95  Aligned_cols=147  Identities=14%  Similarity=0.168  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFSL  108 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~~  108 (890)
                      ++|+++|++|+|||||++++++...   ...++++.++......   .....+.+|||||...+.......    ....+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID---IGGIPVRLIDTAGIRETEDEIEKIGIERAREAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE---eCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence            4799999999999999999998642   2235555453321211   123479999999976543221110    00111


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      .  +++++++|+|++++.+. .....|..                                   ..+.|+++|+||+|+.
T Consensus        79 ~--~~~~~v~v~d~~~~~~~-~~~~~~~~-----------------------------------~~~~~vi~v~nK~D~~  120 (157)
T cd04164          79 E--EADLVLFVIDASRGLDE-EDLEILEL-----------------------------------PADKPIIVVLNKSDLL  120 (157)
T ss_pred             h--hCCEEEEEEECCCCCCH-HHHHHHHh-----------------------------------hcCCCEEEEEEchhcC
Confidence            2  49999999999998875 33332221                                   1258999999999996


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      ..     ...       .....+.+++++||+++.|++++.+.|...
T Consensus       121 ~~-----~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  155 (157)
T cd04164         121 PD-----SEL-------LSLLAGKPIIAISAKTGEGLDELKEALLEL  155 (157)
T ss_pred             Cc-----ccc-------ccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            31     111       344456789999999999999999988765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.56  E-value=2.6e-14  Score=134.21  Aligned_cols=115  Identities=22%  Similarity=0.356  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC----CCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDT----PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~----~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ||+|+|++|||||||+++|++....    +.+..+.++......... ....+++||++|+..+......+      ..+
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~------~~~   73 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQHQFF------LKK   73 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCTSHHH------HHH
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceecccccch------hhc
Confidence            7999999999999999999986543    233333333322222111 12258999999997765544433      114


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      +|++|+|||++++.++ +.+..+++.+......                           ...+|++|||||.|
T Consensus        74 ~d~~ilv~D~s~~~s~-~~~~~~~~~l~~~~~~---------------------------~~~~piilv~nK~D  119 (119)
T PF08477_consen   74 ADAVILVYDLSDPESL-EYLSQLLKWLKNIRKR---------------------------DKNIPIILVGNKSD  119 (119)
T ss_dssp             SCEEEEEEECCGHHHH-HHHHHHHHHHHHHHHH---------------------------SSCSEEEEEEE-TC
T ss_pred             CcEEEEEEcCCChHHH-HHHHHHHHHHHHHHcc---------------------------CCCCCEEEEEeccC
Confidence            9999999999999988 6665554444433211                           12499999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK11058 GTPase HflX; Provisional

Probab=99.56  E-value=5e-14  Score=161.85  Aligned_cols=158  Identities=15%  Similarity=0.127  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSFSLT  109 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~~~~  109 (890)
                      .+|+|+|.+|||||||+|+|++...  ...+..+++........  .....+.+|||+|.++.  .+++..+  +.+.++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l--~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV--ADVGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe--CCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            5899999999999999999998532  12345555644322222  11226889999998553  3444444  212222


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|+|++++.++ +.+..|.+.+.+.                             ...++|+++|+||+|+..
T Consensus       276 --~ADlIL~VvDaS~~~~~-e~l~~v~~iL~el-----------------------------~~~~~pvIiV~NKiDL~~  323 (426)
T PRK11058        276 --QATLLLHVVDAADVRVQ-ENIEAVNTVLEEI-----------------------------DAHEIPTLLVMNKIDMLD  323 (426)
T ss_pred             --cCCEEEEEEeCCCccHH-HHHHHHHHHHHHh-----------------------------ccCCCCEEEEEEcccCCC
Confidence              59999999999999876 5665555544332                             112589999999999852


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .     .. .  ...  ....+.+ ++++||++|.|+++|++.|...+.
T Consensus       324 ~-----~~-~--~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        324 D-----FE-P--RID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             c-----hh-H--HHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            1     10 0  011  1123555 588999999999999999988863

>cd04163 Era Era subfamily

Probab=99.55  E-value=1.7e-13  Score=133.24  Aligned_cols=157  Identities=19%  Similarity=0.153  Sum_probs=100.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFS  107 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~  107 (890)
                      ..+|+++|.+|+|||||+++|++...   ...+..... ..  .......+..+.+||+||...........    ....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRN-RI--RGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceec-eE--EEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            56899999999999999999998532   111111111 11  11111223478999999976543222111    0011


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +.  .+|++++|+|.+++.+.  ....+.+.+..                                .+.|+++|+||+|+
T Consensus        80 ~~--~~d~i~~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~iiv~nK~Dl  123 (168)
T cd04163          80 LK--DVDLVLFVVDASEPIGE--GDEFILELLKK--------------------------------SKTPVILVLNKIDL  123 (168)
T ss_pred             HH--hCCEEEEEEECCCccCc--hHHHHHHHHHH--------------------------------hCCCEEEEEEchhc
Confidence            22  48999999999998331  33333332221                                14799999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      ..     ......+....++...+ .+++++|++++.+++++.+.|.+.
T Consensus       124 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         124 VK-----DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             cc-----cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            52     23344455666666663 689999999999999999988764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.55  E-value=1.1e-13  Score=158.88  Aligned_cols=186  Identities=18%  Similarity=0.184  Sum_probs=113.2

Q ss_pred             CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649          2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK   78 (890)
Q Consensus         2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~   78 (890)
                      |.+++.+.+.+.+.......        .......+|+++|.+|||||||+|+|++..   ....++++.+........ 
T Consensus       147 gv~~ll~~i~~~l~~~~~~~--------~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~-  217 (429)
T TIGR03594       147 GIGDLLDAILELLPEEEEEE--------EEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFER-  217 (429)
T ss_pred             ChHHHHHHHHHhcCcccccc--------cccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEE-
Confidence            34566676666653322111        112346899999999999999999999853   233355554432212111 


Q ss_pred             cccceEEEEEEcCCCcchhhHH---hhh----hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649         79 TVMKDICHLWELGSGTSRLEVA---SLF----SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE  151 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~Li---~~~----r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~  151 (890)
                        .+..+.+|||||..+...+.   ..+    ....++  .+|++|+|+|.+++.+. ... .+...+.           
T Consensus       218 --~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~--~ad~~ilV~D~~~~~~~-~~~-~~~~~~~-----------  280 (429)
T TIGR03594       218 --NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIE--RADVVLLVLDATEGITE-QDL-RIAGLIL-----------  280 (429)
T ss_pred             --CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHH--hCCEEEEEEECCCCccH-HHH-HHHHHHH-----------
Confidence              12378999999976543221   111    111122  59999999999998775 222 2222111           


Q ss_pred             hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHH-HHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649        152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHSSLDPGLVKRTRD  230 (890)
Q Consensus       152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~~~Ga~l~etSAK~~~nId~Lk~  230 (890)
                                           ..++|+++|+||+|+.+  +.+........++. +....++++++|||++|.|++++++
T Consensus       281 ---------------------~~~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~  337 (429)
T TIGR03594       281 ---------------------EAGKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLD  337 (429)
T ss_pred             ---------------------HcCCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHH
Confidence                                 12689999999999962  11222222222322 2222357899999999999999999


Q ss_pred             HHHHHH
Q psy11649        231 ILNHYA  236 (890)
Q Consensus       231 ~I~~~l  236 (890)
                      .+....
T Consensus       338 ~i~~~~  343 (429)
T TIGR03594       338 AIDEVY  343 (429)
T ss_pred             HHHHHH
Confidence            988765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.55  E-value=1.2e-13  Score=135.93  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=95.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH---Hhhh---h-
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV---ASLF---S-  104 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L---i~~~---r-  104 (890)
                      .++|+++|++|+|||||+++|++...   ...++.+.+.......   ..+..+.+||+||.......   ...+   + 
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~   78 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE---YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT   78 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE---ECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence            46899999999999999999998532   2223333332111111   11236889999997543110   0000   0 


Q ss_pred             ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649        105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK  184 (890)
Q Consensus       105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK  184 (890)
                      ...+.  ++|++++|+|.+++.+. ..+ .+...+.                                ..+.|+++|+||
T Consensus        79 ~~~~~--~~d~vi~v~d~~~~~~~-~~~-~~~~~~~--------------------------------~~~~~~iiv~nK  122 (174)
T cd01895          79 LKAIE--RADVVLLVIDATEGITE-QDL-RIAGLIL--------------------------------EEGKALVIVVNK  122 (174)
T ss_pred             HHHHh--hcCeEEEEEeCCCCcch-hHH-HHHHHHH--------------------------------hcCCCEEEEEec
Confidence            00112  48999999999998775 222 2222111                                125799999999


Q ss_pred             ccCCCCCCcchhhhhHHHHHHHHHHc----CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        185 YDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       185 ~Dl~~d~d~e~r~~i~~~lr~la~~~----Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +|+.....    .........+...+    +++++++||+++.|++++++.+...
T Consensus       123 ~Dl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         123 WDLVEKDS----KTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cccCCccH----HHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            99863210    11112222333333    3689999999999999998887653

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.55  E-value=2e-13  Score=139.10  Aligned_cols=160  Identities=13%  Similarity=0.185  Sum_probs=102.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc----------chhhH
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT----------SRLEV   99 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~----------~~~~L   99 (890)
                      .....+|+|+|++|||||||+++|+++.  ..+.++.+..... .. ...  ...+.||||||..          .+..+
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-~~-~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-NF-FEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE-EE-Eec--CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            3456899999999999999999999853  3333444432111 11 111  2379999999942          33334


Q ss_pred             Hhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649        100 ASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus       100 i~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      ...+ +.  .  ...+++++|+|.+++.+.  .-..+...+    .                            ..++|+
T Consensus        97 ~~~~~~~--~--~~~~~~~~v~d~~~~~~~--~~~~i~~~l----~----------------------------~~~~~~  138 (196)
T PRK00454         97 IEEYLRT--R--ENLKGVVLLIDSRHPLKE--LDLQMIEWL----K----------------------------EYGIPV  138 (196)
T ss_pred             HHHHHHh--C--ccceEEEEEEecCCCCCH--HHHHHHHHH----H----------------------------HcCCcE
Confidence            4444 21  0  125688899998887553  111111111    1                            126899


Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+||+|+..   ..+++...+.+.+........++++||+++.|++++.++|...+
T Consensus       139 iiv~nK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        139 LIVLTKADKLK---KGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEEEECcccCC---HHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence            99999999862   22333334445555544467899999999999999999998775

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.54  E-value=1.2e-13  Score=130.20  Aligned_cols=153  Identities=19%  Similarity=0.247  Sum_probs=102.0

Q ss_pred             EEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEE
Q psy11649         40 LIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTL  116 (890)
Q Consensus        40 LVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~I  116 (890)
                      |+|.+|+|||||++++++...   ...++. .++...... .......+.+||++|...+......+    +  .+++++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~-~~~~~~~~~l~D~~g~~~~~~~~~~~----~--~~~~~~   72 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIE-VDGKKVKLQIWDTAGQERFRSLRRLY----Y--RGADGI   72 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEE-ECCEEEEEEEEecCChHHHHhHHHHH----h--cCCCEE
Confidence            589999999999999998533   333444 554322222 11123379999999987766554444    1  148999


Q ss_pred             EEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchh
Q psy11649        117 VLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK  196 (890)
Q Consensus       117 IIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r  196 (890)
                      ++|+|++++.++ +.+..|.......                            ....++|+++|+||+|+....+   .
T Consensus        73 i~v~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~~~ivv~nk~D~~~~~~---~  120 (157)
T cd00882          73 ILVYDVTDRESF-ENVKEWLLLILIN----------------------------KEGENIPIILVGNKIDLPEERV---V  120 (157)
T ss_pred             EEEEECcCHHHH-HHHHHHHHHHHHh----------------------------hccCCCcEEEEEeccccccccc---h
Confidence            999999998887 5555552111111                            1234689999999999863211   1


Q ss_pred             hhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        197 RIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       197 ~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                      . ........+...+.+++++|++++.|++++.+.|.
T Consensus       121 ~-~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         121 S-EEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             H-HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            1 01124445556678999999999999999988764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01894 EngA1 EngA1 subfamily

Probab=99.54  E-value=1.7e-13  Score=133.34  Aligned_cols=147  Identities=16%  Similarity=0.133  Sum_probs=93.8

Q ss_pred             EEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-----HHhhhhcccccc
Q psy11649         39 LLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-----VASLFSSFSLTA  110 (890)
Q Consensus        39 vLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-----Li~~~r~~~~~~  110 (890)
                      +++|.+|||||||+++|++..   ....+.++.+..+.....   .+..+.+|||||...+..     +.... ...++ 
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~DtpG~~~~~~~~~~~~~~~~-~~~~~-   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW---GGREFILIDTGGIEPDDEGISKEIREQA-ELAIE-   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE---CCeEEEEEECCCCCCchhHHHHHHHHHH-HHHHH-
Confidence            589999999999999999853   122244444432222221   223799999999887544     11111 01122 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++++|+|.+++.+. ... ...+.++                                ..++|+++|+||+|+.. 
T Consensus        76 -~~d~ii~v~d~~~~~~~-~~~-~~~~~~~--------------------------------~~~~piiiv~nK~D~~~-  119 (157)
T cd01894          76 -EADVILFVVDGREGLTP-ADE-EIAKYLR--------------------------------KSKKPVILVVNKVDNIK-  119 (157)
T ss_pred             -hCCEEEEEEeccccCCc-cHH-HHHHHHH--------------------------------hcCCCEEEEEECcccCC-
Confidence             48999999999886553 121 1112111                                12489999999999852 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                          ... .    .......+. .++++|++++.|++++++.|...
T Consensus       120 ----~~~-~----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         120 ----EED-E----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             ----hHH-H----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence                111 1    222334565 78999999999999999988754

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.54  E-value=7.6e-14  Score=161.66  Aligned_cols=149  Identities=17%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF  106 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~  106 (890)
                      ..++|+++|.+|||||||+|+|++..   ....++.+.++.......   .+..+.+|||||...+...+...    ...
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~---~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~  290 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL---DGIPLRLIDTAGIRETDDEVEKIGIERSRE  290 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE---CCeEEEEEeCCCCCCCccHHHHHHHHHHHH
Confidence            34799999999999999999999854   233466666643322221   23378999999987654443321    111


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .+.  ++|++++|+|.+++.++ +....|.+                                   ..+.|+++|+||+|
T Consensus       291 ~~~--~aD~il~VvD~s~~~s~-~~~~~l~~-----------------------------------~~~~piiiV~NK~D  332 (449)
T PRK05291        291 AIE--EADLVLLVLDASEPLTE-EDDEILEE-----------------------------------LKDKPVIVVLNKAD  332 (449)
T ss_pred             HHH--hCCEEEEEecCCCCCCh-hHHHHHHh-----------------------------------cCCCCcEEEEEhhh
Confidence            122  59999999999999886 34333332                                   11579999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +..     .... .       ...+..++++||++|.|++++++.|...+
T Consensus       333 L~~-----~~~~-~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l  369 (449)
T PRK05291        333 LTG-----EIDL-E-------EENGKPVIRISAKTGEGIDELREAIKELA  369 (449)
T ss_pred             ccc-----cchh-h-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence            952     1111 0       33467799999999999999999998876

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.53  E-value=1.1e-13  Score=160.53  Aligned_cols=170  Identities=16%  Similarity=0.122  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS  107 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~  107 (890)
                      ..|+|||.||||||||+|+|++...   +| |..+++.......   ..+..+.|||+||....    ..+...+ +.  
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIady-pfTTl~P~lGvv~---~~~~~f~laDtPGliegas~g~gLg~~fLrh--  233 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADY-PFTTLVPNLGVVQ---AGDTRFTVADVPGLIPGASEGKGLGLDFLRH--  233 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCcccccc-CcccccceEEEEE---ECCeEEEEEECCCCccccchhhHHHHHHHHH--
Confidence            5799999999999999999998421   22 3333332211111   12237999999996431    2233333 21  


Q ss_pred             cccccCcEEEEEEeCCCcC----chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        108 LTAQSGFTLVLMLDLSRLN----SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~----S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                      +  ..++++|+|+|+++.+    .+ +.+..|..++..+...+.                  .+.........|++||+|
T Consensus       234 i--eradvLv~VVD~s~~e~~rdp~-~d~~~i~~EL~~y~~~l~------------------~~~~~~~l~~kP~IVVlN  292 (500)
T PRK12296        234 I--ERCAVLVHVVDCATLEPGRDPL-SDIDALEAELAAYAPALD------------------GDLGLGDLAERPRLVVLN  292 (500)
T ss_pred             H--HhcCEEEEEECCcccccccCch-hhHHHHHHHHHHhhhccc------------------ccchhhhhcCCCEEEEEE
Confidence            1  2489999999998743    22 455556655554432100                  000001123689999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |+|+.+     .+. ..+.++......+++++++||+++.|+++|+..|...+-.
T Consensus       293 KiDL~d-----a~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        293 KIDVPD-----ARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             Cccchh-----hHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999852     222 2223333334458899999999999999999999888743

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.51  E-value=3.7e-13  Score=136.44  Aligned_cols=148  Identities=15%  Similarity=0.162  Sum_probs=94.7

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccc--eeEEEEEEeccccceEEEEEEcCCCc----------chh
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLAL--EYIYARKSGKTVMKDICHLWELGSGT----------SRL   97 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigv--dY~f~~~~g~~~~k~~l~IwDlpG~~----------~~~   97 (890)
                      .....+|+|+|.+|||||||+|+|++..  ..+.++.+.  +..+...    .  ..+.+|||||..          .+.
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~--~~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----N--DGFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----C--CcEEEEeCCCCccccCChhHHHHHH
Confidence            3457899999999999999999999863  222333332  2111111    1  158999999952          233


Q ss_pred             hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         98 EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        98 ~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      .+...+ +. .-   .++++++|+|.+++-+. ... .+.+.+.                                ..++
T Consensus        89 ~~~~~~l~~-~~---~~~~ii~vvd~~~~~~~-~~~-~~~~~~~--------------------------------~~~~  130 (179)
T TIGR03598        89 KLIEEYLEK-RE---NLKGVVLLMDIRHPLKE-LDL-EMLEWLR--------------------------------ERGI  130 (179)
T ss_pred             HHHHHHHHh-Ch---hhcEEEEEecCCCCCCH-HHH-HHHHHHH--------------------------------HcCC
Confidence            333334 21 01   26799999999886553 222 2222211                                1268


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVK  226 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId  226 (890)
                      |+++|+||+|+..   .+......++++..+...+  ..++++||++|.|++
T Consensus       131 pviiv~nK~D~~~---~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       131 PVLIVLTKADKLK---KSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CEEEEEECcccCC---HHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            9999999999863   2234445566666666664  479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00089 era GTPase Era; Reviewed

Probab=99.49  E-value=1.1e-12  Score=143.29  Aligned_cols=159  Identities=21%  Similarity=0.213  Sum_probs=103.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEec-cccceEEEEEEcCCCcchhhHHhhh----hc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGK-TVMKDICHLWELGSGTSRLEVASLF----SS  105 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~~~~Li~~~----r~  105 (890)
                      +.-.|+|+|.+|||||||+|+|++...   ...+..+...    ..+. ...+.++.+|||||...........    ..
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~----i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHR----IRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccccc----EEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence            345699999999999999999998632   2333333221    1111 1122479999999975532211111    01


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      ..+.  ++|++++|+|+++..+  .......+.+.                                ..+.|+++|+||+
T Consensus        80 ~~~~--~~D~il~vvd~~~~~~--~~~~~i~~~l~--------------------------------~~~~pvilVlNKi  123 (292)
T PRK00089         80 SSLK--DVDLVLFVVDADEKIG--PGDEFILEKLK--------------------------------KVKTPVILVLNKI  123 (292)
T ss_pred             HHHh--cCCEEEEEEeCCCCCC--hhHHHHHHHHh--------------------------------hcCCCEEEEEECC
Confidence            1122  5999999999998433  12222222211                                1258999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      |+..     .+......+..++..++ ..++++||+++.|++++.+.|...+.
T Consensus       124 Dl~~-----~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        124 DLVK-----DKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             cCCC-----CHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            9952     23334556666766655 67999999999999999999988864

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.48  E-value=1.7e-12  Score=147.73  Aligned_cols=161  Identities=15%  Similarity=0.092  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh----hHHhhh-hccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----EVASLF-SSFSLT  109 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----~Li~~~-r~~~~~  109 (890)
                      .|+|||.||||||||+|+|++...  ..+|..+..-.+....  ......+.++||||...-.    .+...+ +.  +.
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~--~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~--i~  236 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVR--VDDERSFVVADIPGLIEGASEGAGLGIRFLKH--LE  236 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEE--eCCCcEEEEEeCCCccccccchhhHHHHHHHH--HH
Confidence            699999999999999999998421  2224333332221111  1112369999999975421    122222 21  12


Q ss_pred             cccCcEEEEEEeCC---CcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        110 AQSGFTLVLMLDLS---RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       110 ~~~ad~IIIV~DlS---np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                        .++++++|+|++   +...+ +++..|.+++......+                           ...|++||+||+|
T Consensus       237 --radvlL~VVD~s~~~~~d~~-e~~~~l~~eL~~~~~~L---------------------------~~kP~IlVlNKiD  286 (390)
T PRK12298        237 --RCRVLLHLIDIAPIDGSDPV-ENARIIINELEKYSPKL---------------------------AEKPRWLVFNKID  286 (390)
T ss_pred             --hCCEEEEEeccCcccccChH-HHHHHHHHHHHhhhhhh---------------------------cCCCEEEEEeCCc
Confidence              489999999998   33444 67777777766543321                           2479999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +..      +....+.++.++..++  ..++++||+++.|++++.+.|...+.
T Consensus       287 l~~------~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~  333 (390)
T PRK12298        287 LLD------EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIE  333 (390)
T ss_pred             cCC------hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence            852      2223445566666655  46899999999999999999988873

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.47  E-value=1.3e-12  Score=150.57  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=102.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH---Hhhh---h
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV---ASLF---S  104 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L---i~~~---r  104 (890)
                      ..++|+++|.+|||||||+|+|++...   ...++++.+.......   ..+..+.+|||||..+...+   ...+   +
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~---~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFE---RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEE---ECCeeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            469999999999999999999998532   3345555443211111   12336899999997532211   1111   0


Q ss_pred             -ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        105 -SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       105 -~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                       ...++  .+|++|+|+|++++.+. ... .+...+.                                ..+.|+++|+|
T Consensus       249 ~~~~~~--~ad~~ilViD~~~~~~~-~~~-~i~~~~~--------------------------------~~~~~~ivv~N  292 (435)
T PRK00093        249 TLKAIE--RADVVLLVIDATEGITE-QDL-RIAGLAL--------------------------------EAGRALVIVVN  292 (435)
T ss_pred             HHHHHH--HCCEEEEEEeCCCCCCH-HHH-HHHHHHH--------------------------------HcCCcEEEEEE
Confidence             01122  48999999999998775 222 2222111                                12689999999


Q ss_pred             cccCCCCCCcchhhhhHHHHH-HHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        184 KYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr-~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+|+..   .+........++ .+.....++++++||+++.|++++.+.+....
T Consensus       293 K~Dl~~---~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        293 KWDLVD---EKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             CccCCC---HHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999862   122222333332 22223358899999999999999999887664

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.46  E-value=1.2e-12  Score=156.38  Aligned_cols=155  Identities=15%  Similarity=0.054  Sum_probs=105.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---------CCCCC------ccceeEEEEEEe--c--cccceEEEEEEcCCCcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---------TPKPT------LALEYIYARKSG--K--TVMKDICHLWELGSGTS   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---------~~kpt------igvdY~f~~~~g--~--~~~k~~l~IwDlpG~~~   95 (890)
                      -.+|+++|..++|||||+++|+...+         .+..+      .|+.+.-.....  .  ......+++|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            35899999999999999999987421         11111      133322111111  1  12224899999999998


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                      |...+..+    ++  .+|++|+|+|+++..+. .++..|...+.                                 .+
T Consensus        83 F~~~v~~~----l~--~aD~aILVvDat~g~~~-qt~~~~~~~~~---------------------------------~~  122 (595)
T TIGR01393        83 FSYEVSRS----LA--ACEGALLLVDAAQGIEA-QTLANVYLALE---------------------------------ND  122 (595)
T ss_pred             HHHHHHHH----HH--hCCEEEEEecCCCCCCH-hHHHHHHHHHH---------------------------------cC
Confidence            87766666    22  49999999999997765 45555543211                                 15


Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+++|+||+|+...    .   ......+++..+|+   .++++||++|.|++++++.|...+
T Consensus       123 ipiIiViNKiDl~~~----~---~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       123 LEIIPVINKIDLPSA----D---PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             CCEEEEEECcCCCcc----C---HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            899999999998421    1   12233455555665   389999999999999999998775

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0075|consensus

Probab=99.46  E-value=1.7e-13  Score=132.60  Aligned_cols=158  Identities=20%  Similarity=0.185  Sum_probs=109.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ  111 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~  111 (890)
                      ++.+.++|-.++|||||+|....+  .+...||+|..  ..+.+   .+...+.+||+||+.+|+.+++.| |       
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~t---kgnvtiklwD~gGq~rfrsmWerycR-------   87 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVT---KGNVTIKLWDLGGQPRFRSMWERYCR-------   87 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEec---cCceEEEEEecCCCccHHHHHHHHhh-------
Confidence            567999999999999999988764  34556888844  21222   122379999999999999999999 5       


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +.+++++|+|.++|+.+        ...++.+..++...                     .-.++|++|.|||.|+-..+
T Consensus        88 ~v~aivY~VDaad~~k~--------~~sr~EL~~LL~k~---------------------~l~gip~LVLGnK~d~~~AL  138 (186)
T KOG0075|consen   88 GVSAIVYVVDAADPDKL--------EASRSELHDLLDKP---------------------SLTGIPLLVLGNKIDLPGAL  138 (186)
T ss_pred             cCcEEEEEeecCCcccc--------hhhHHHHHHHhcch---------------------hhcCCcEEEecccccCcccc
Confidence            49999999999998876        22333333333211                     12379999999999986544


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +  ....+.+..-.-...-.+..|.+|+|+..|++.+.++|...
T Consensus       139 ~--~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~h  180 (186)
T KOG0075|consen  139 S--KIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEH  180 (186)
T ss_pred             c--HHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence            3  22222211111111123568899999999999999998765

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.46  E-value=9.6e-13  Score=156.88  Aligned_cols=155  Identities=12%  Similarity=0.050  Sum_probs=108.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .|+++|..++|||||+++|++..     +++.+++++++.|......   +..+.+||+||++.|.......    +  .
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~---~~~v~~iDtPGhe~f~~~~~~g----~--~   72 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP---DYRLGFIDVPGHEKFISNAIAG----G--G   72 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC---CEEEEEEECCCHHHHHHHHHhh----h--c
Confidence            58999999999999999999732     3445677777665443322   2479999999998775444333    1  2


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc-EEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d  190 (890)
                      ++|++++|+|+++....  .....+..+                                ...++| ++||+||+|+.. 
T Consensus        73 ~aD~aILVVDa~~G~~~--qT~ehl~il--------------------------------~~lgi~~iIVVlNK~Dlv~-  117 (581)
T TIGR00475        73 GIDAALLVVDADEGVMT--QTGEHLAVL--------------------------------DLLGIPHTIVVITKADRVN-  117 (581)
T ss_pred             cCCEEEEEEECCCCCcH--HHHHHHHHH--------------------------------HHcCCCeEEEEEECCCCCC-
Confidence            59999999999984321  111222111                                113678 999999999962 


Q ss_pred             CCcchhhhhHHHHHHHHHHc----CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~----Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+.......+++.++..+    +++++++||++|.|++++++.|...+-
T Consensus       118 --~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~  166 (581)
T TIGR00475       118 --EEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLE  166 (581)
T ss_pred             --HHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHH
Confidence              122233455677776665    478999999999999999999987763

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.45  E-value=2.3e-12  Score=157.29  Aligned_cols=188  Identities=15%  Similarity=0.073  Sum_probs=113.8

Q ss_pred             CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649          2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK   78 (890)
Q Consensus         2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~   78 (890)
                      |.++|.+.+++.+....... .     ........+|+++|.+|||||||+|+|++..   ....++++.+........ 
T Consensus       423 GI~eLl~~i~~~l~~~~~~~-~-----a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~-  495 (712)
T PRK09518        423 GVGDLLDEALDSLKVAEKTS-G-----FLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEI-  495 (712)
T ss_pred             CchHHHHHHHHhcccccccc-c-----ccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEE-
Confidence            45667777777664321110 0     0112345899999999999999999999864   233466666643211111 


Q ss_pred             cccceEEEEEEcCCCcch-h-----hHHhhhh-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649         79 TVMKDICHLWELGSGTSR-L-----EVASLFS-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE  151 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~-~-----~Li~~~r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~  151 (890)
                        .+..+.+|||||..+- .     ......+ ...++  ++|++|+|+|.++..+. ..+. +...+.           
T Consensus       496 --~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~--~advvilViDat~~~s~-~~~~-i~~~~~-----------  558 (712)
T PRK09518        496 --DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIE--RSELALFLFDASQPISE-QDLK-VMSMAV-----------  558 (712)
T ss_pred             --CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhh--cCCEEEEEEECCCCCCH-HHHH-HHHHHH-----------
Confidence              2236789999996421 0     1111111 11122  59999999999998886 3333 222221           


Q ss_pred             hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHH-HHcCCeEEEEeccCCCCHHHHHH
Q psy11649        152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNGASLLFHSSLDPGLVKRTRD  230 (890)
Q Consensus       152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~~Ga~l~etSAK~~~nId~Lk~  230 (890)
                                           ..++|++||+||+|+..   .+.++.....++... ....++++++||++|.|++++++
T Consensus       559 ---------------------~~~~piIiV~NK~DL~~---~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~  614 (712)
T PRK09518        559 ---------------------DAGRALVLVFNKWDLMD---EFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAP  614 (712)
T ss_pred             ---------------------HcCCCEEEEEEchhcCC---hhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHH
Confidence                                 12689999999999963   112222222222111 11246789999999999999999


Q ss_pred             HHHHHHh
Q psy11649        231 ILNHYAF  237 (890)
Q Consensus       231 ~I~~~lf  237 (890)
                      .+.....
T Consensus       615 ~i~~~~~  621 (712)
T PRK09518        615 AMQEALE  621 (712)
T ss_pred             HHHHHHH
Confidence            9988763

>KOG4423|consensus

Probab=99.44  E-value=8.3e-15  Score=146.63  Aligned_cols=165  Identities=16%  Similarity=0.234  Sum_probs=127.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccc--eEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMK--DICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k--~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .-++++|+|+.++||||++.++...  +..|+.|+|++|..  +....+.+  .++++||++||++|..+..+|    |+
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfal--kVl~wdd~t~vRlqLwdIagQerfg~mtrVy----yk   97 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFAL--KVLQWDDKTIVRLQLWDIAGQERFGNMTRVY----YK   97 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHH--HHhccChHHHHHHHHhcchhhhhhcceEEEE----ec
Confidence            4589999999999999999999874  55789999999653  33222222  289999999999999999888    33


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        .+.+.++|||+|+.-+| +....|.+++..-                         ..+.+..++|+++..||||...
T Consensus        98 --ea~~~~iVfdvt~s~tf-e~~skwkqdldsk-------------------------~qLpng~Pv~~vllankCd~e~  149 (229)
T KOG4423|consen   98 --EAHGAFIVFDVTRSLTF-EPVSKWKQDLDSK-------------------------LQLPNGTPVPCVLLANKCDQEK  149 (229)
T ss_pred             --CCcceEEEEEccccccc-cHHHHHHHhccCc-------------------------ccCCCCCcchheeccchhccCh
Confidence              59999999999999998 8889999854321                         2345567899999999999842


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +    ....-.....++++.+|+. .++||+|.+.|+++..+.+...+
T Consensus       150 ~----a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~  193 (229)
T KOG4423|consen  150 S----AKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKI  193 (229)
T ss_pred             H----hhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHH
Confidence            1    1111235677888889864 99999999999999866665554

>KOG0096|consensus

Probab=99.43  E-value=2.5e-13  Score=136.65  Aligned_cols=162  Identities=16%  Similarity=0.169  Sum_probs=126.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++++++|+.|+|||+++++.+.+  +.++.+|+|++..- .....+.+..++.+|||+|++.+..+...|    |  +
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~p-l~f~tn~g~irf~~wdtagqEk~gglrdgy----y--I   81 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHP-LLFDTNRGQIRFNVWDTAGQEKKGGLRDGY----Y--I   81 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEee-eeeecccCcEEEEeeecccceeeccccccc----E--E
Confidence            4689999999999999999998876  45789999988432 222333334589999999999988887766    1  2


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +..+.||+||++..-++ .++.+|...+.+.+++                              +||+++|||.|..   
T Consensus        82 ~~qcAiimFdVtsr~t~-~n~~rwhrd~~rv~~N------------------------------iPiv~cGNKvDi~---  127 (216)
T KOG0096|consen   82 QGQCAIIMFDVTSRFTY-KNVPRWHRDLVRVREN------------------------------IPIVLCGNKVDIK---  127 (216)
T ss_pred             ecceeEEEeeeeehhhh-hcchHHHHHHHHHhcC------------------------------CCeeeeccceecc---
Confidence            48899999999999888 8999999988876654                              8999999999984   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhccC
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH  240 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~~  240 (890)
                         .+++ ....-.+-+..++.++++||+++.|.++-+-++...+-+.+
T Consensus       128 ---~r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  128 ---ARKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDP  172 (216)
T ss_pred             ---cccc-ccccceeeecccceeEEeecccccccccchHHHhhhhcCCC
Confidence               2321 11122333455788999999999999999999988876544

>KOG3883|consensus

Probab=99.42  E-value=3.9e-12  Score=124.03  Aligned_cols=164  Identities=16%  Similarity=0.218  Sum_probs=124.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhcccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSL  108 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~  108 (890)
                      +..||+++|-.+||||+++.+|+.+.    ..+.||+..-|.-...++.. ....+.++||.|.... .++-..|    +
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-arE~l~lyDTaGlq~~~~eLprhy----~   82 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-AREQLRLYDTAGLQGGQQELPRHY----F   82 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-hhheEEEeecccccCchhhhhHhH----h
Confidence            46799999999999999999998742    35567777544322222222 2238999999997665 5555555    1


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        .-+|++++|||..+++|| +.++....+|.++-+                            .-.+||+|.+||+|+.
T Consensus        83 --q~aDafVLVYs~~d~eSf-~rv~llKk~Idk~Kd----------------------------KKEvpiVVLaN~rdr~  131 (198)
T KOG3883|consen   83 --QFADAFVLVYSPMDPESF-QRVELLKKEIDKHKD----------------------------KKEVPIVVLANKRDRA  131 (198)
T ss_pred             --ccCceEEEEecCCCHHHH-HHHHHHHHHHhhccc----------------------------cccccEEEEechhhcc
Confidence              138999999999999998 655555444443222                            2359999999999995


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           +.+.+....+..||++-.+.+++++|++...+-+.+-++.+.++.
T Consensus       132 -----~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  132 -----EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             -----cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence                 578888889999999999999999999999999999999988854

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.41  E-value=6.2e-12  Score=122.79  Aligned_cols=153  Identities=15%  Similarity=0.154  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc----------hhhHHhhh-
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----------RLEVASLF-  103 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----------~~~Li~~~-  103 (890)
                      .|+++|.+|+|||||+++++++  .....++.+....  .......  ..+.+||+||...          +..+...+ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~   76 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQL--INFFNVN--DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL   76 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCccee--EEEEEcc--CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence            3899999999999999999943  3333344443211  1111111  1789999999432          33333334 


Q ss_pred             hccccccccCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                      +..    .+.+++++++|.++..+. ...+..|+.                                   ..+.|+++|+
T Consensus        77 ~~~----~~~~~~~~v~d~~~~~~~~~~~~~~~l~-----------------------------------~~~~~vi~v~  117 (170)
T cd01876          77 ENR----ENLKGVVLLIDSRHGPTEIDLEMLDWLE-----------------------------------ELGIPFLVVL  117 (170)
T ss_pred             HhC----hhhhEEEEEEEcCcCCCHhHHHHHHHHH-----------------------------------HcCCCEEEEE
Confidence            210    125789999999876432 112223332                                   1147999999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHH--HcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAH--VNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~--~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      ||+|+..   .+++.......+....  ....+++++||+++.+++++.+.|...
T Consensus       118 nK~D~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         118 TKADKLK---KSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             EchhcCC---hHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            9999852   2233333333333333  334679999999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.41  E-value=3.9e-12  Score=125.07  Aligned_cols=135  Identities=20%  Similarity=0.234  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-----hhhHHhhhhcccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-----RLEVASLFSSFSLTA  110 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-----~~~Li~~~r~~~~~~  110 (890)
                      +||+|||..|||||||+++|.+....|+.|..++|.             -.++||||.+-     +..++...       
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~-------------~~~IDTPGEyiE~~~~y~aLi~ta-------   61 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYY-------------DNTIDTPGEYIENPRFYHALIVTA-------   61 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCCcCccceeEec-------------ccEEECChhheeCHHHHHHHHHHH-------
Confidence            489999999999999999999988888888888752             25699999652     12222222       


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .++|+|++|.|.+++.+..                                    | -.+...+..|+|=|+||+|+..+
T Consensus        62 ~dad~V~ll~dat~~~~~~------------------------------------p-P~fa~~f~~pvIGVITK~Dl~~~  104 (143)
T PF10662_consen   62 QDADVVLLLQDATEPRSVF------------------------------------P-PGFASMFNKPVIGVITKIDLPSD  104 (143)
T ss_pred             hhCCEEEEEecCCCCCccC------------------------------------C-chhhcccCCCEEEEEECccCccc
Confidence            2499999999999987640                                    0 01123356899999999999521


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~  233 (890)
                            ....+.++++-+.-|+. +|++|+.+|+|+++|+++|.
T Consensus       105 ------~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  105 ------DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             ------hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence                  11233456666666875 89999999999999999985

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.41  E-value=4e-12  Score=132.26  Aligned_cols=148  Identities=17%  Similarity=0.163  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC-CCCccceeEEEEEEec-cccceEEEEEEcCCCcchhhHHhhhhccccccccC-
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTP-KPTLALEYIYARKSGK-TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG-  113 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~-kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a-  113 (890)
                      +|+++|++|||||||+++|+++.... .+++...+.  ..... ......++|||+||+.++......+    ++  ++ 
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~--~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~----~~--~~~   73 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVA--TFILNSEGKGKKFRLVDVPGHPKLRDKLLET----LK--NSA   73 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecce--EEEeecCCCCceEEEEECCCCHHHHHHHHHH----Hh--ccC
Confidence            69999999999999999999863311 122221111  11111 0122379999999999887766655    22  36 


Q ss_pred             cEEEEEEeCCCc-CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSnp-~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +++|+|+|.++. .++ .....|+..+.....                          ....++|++||+||+|+.....
T Consensus        74 ~~vV~VvD~~~~~~~~-~~~~~~l~~il~~~~--------------------------~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          74 KGIVFVVDSATFQKNL-KDVAEFLYDILTDLE--------------------------KVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             CEEEEEEECccchhHH-HHHHHHHHHHHHHHh--------------------------hccCCCCEEEEecchhhcccCC
Confidence            899999999997 555 444444433322111                          1113689999999999875333


Q ss_pred             cc-hhhhhHHHHHHHHHHcCCeEEEEec
Q psy11649        193 PN-KKRIAVQCLRYLAHVNGASLLFHSS  219 (890)
Q Consensus       193 ~e-~r~~i~~~lr~la~~~Ga~l~etSA  219 (890)
                      .+ -++....++..+.......+..+++
T Consensus       127 ~~~i~~~le~ei~~~~~~r~~~l~~~~~  154 (203)
T cd04105         127 AKKIKEQLEKELNTLRESRSKSLSSLDG  154 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            22 2444555565566555554444444

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.40  E-value=5.1e-12  Score=131.26  Aligned_cols=159  Identities=14%  Similarity=0.065  Sum_probs=95.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-----CCCC--CccceeEEEEEE---------------------------e-ccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND-----TPKP--TLALEYIYARKS---------------------------G-KTV   80 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~-----~~kp--tigvdY~f~~~~---------------------------g-~~~   80 (890)
                      .+|+++|..++|||||+..+++...     ....  ++.+.|......                           + ...
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            3689999999999999999986411     1111  111111110000                           0 000


Q ss_pred             cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                      ...++.+|||||+..+.......    .  .++|++++|+|++++.........| ..+..                   
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~----~--~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~-------------------  134 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSG----A--AVMDGALLLIAANEPCPQPQTSEHL-AALEI-------------------  134 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHh----h--hcCCEEEEEEECCCCCCCcchHHHH-HHHHH-------------------
Confidence            01479999999986653322222    1  1489999999999742110112211 11110                   


Q ss_pred             ccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        161 TADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       161 ~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                                   .+ .|++||+||+|+..   .+......+.+++++..+   +++++++||+++.|+++++++|...+
T Consensus       135 -------------~~~~~iiivvNK~Dl~~---~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         135 -------------MGLKHIIIVQNKIDLVK---EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             -------------cCCCcEEEEEEchhccC---HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence                         02 37999999999852   112222234555555543   67899999999999999999998775

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>COG1159 Era GTPase [General function prediction only]

Probab=99.40  E-value=5.7e-12  Score=135.83  Aligned_cols=163  Identities=18%  Similarity=0.204  Sum_probs=108.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEecc-ccceEEEEEEcCCCcchhh-----HHhhh
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKT-VMKDICHLWELGSGTSRLE-----VASLF  103 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~-~~k~~l~IwDlpG~~~~~~-----Li~~~  103 (890)
                      .+.--|++||.||||||||+|+++|..   -+.+|.++..    +..|.. .++.++-+.||||..+-..     +....
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~----~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a   79 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRN----RIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAA   79 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhh----heeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHH
Confidence            344569999999999999999999964   3555666644    333422 2234899999999754322     22222


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                       ..++.  ++|++++|+|.+..+.-  ..+..++.++.                                ...|++++.|
T Consensus        80 -~~sl~--dvDlilfvvd~~~~~~~--~d~~il~~lk~--------------------------------~~~pvil~iN  122 (298)
T COG1159          80 -RSALK--DVDLILFVVDADEGWGP--GDEFILEQLKK--------------------------------TKTPVILVVN  122 (298)
T ss_pred             -HHHhc--cCcEEEEEEeccccCCc--cHHHHHHHHhh--------------------------------cCCCeEEEEE
Confidence             12234  79999999999997663  33333333222                                2579999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHhccCc
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFSSHL  241 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf~~~~  241 (890)
                      |+|...     ...........+..... ..++++||+++.|++.|.+.+...+-..+.
T Consensus       123 KID~~~-----~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~  176 (298)
T COG1159         123 KIDKVK-----PKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW  176 (298)
T ss_pred             ccccCC-----cHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence            999863     12112233333333333 359999999999999999999998855443

>cd00880 Era_like Era (E

Probab=99.40  E-value=6e-12  Score=120.51  Aligned_cols=155  Identities=18%  Similarity=0.163  Sum_probs=93.8

Q ss_pred             EEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhh----hhcccccccc
Q psy11649         40 LIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASL----FSSFSLTAQS  112 (890)
Q Consensus        40 LVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~----~r~~~~~~~~  112 (890)
                      |+|.+|||||||++++++...   ...++.+.+..  ...........+.+||+||..........    ... .+.  +
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~-~~~--~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPV--EYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR-VLE--R   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCe--EEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH-HHH--h
Confidence            589999999999999998522   11222222211  11111111237999999998665322221    100 011  4


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++++|+|.+++.+. .... |....                                ...++|+++|+||+|+.....
T Consensus        76 ~d~il~v~~~~~~~~~-~~~~-~~~~~--------------------------------~~~~~~~ivv~nK~D~~~~~~  121 (163)
T cd00880          76 ADLILFVVDADLRADE-EEEK-LLELL--------------------------------RERGKPVLLVLNKIDLLPEEE  121 (163)
T ss_pred             CCEEEEEEeCCCCCCH-HHHH-HHHHH--------------------------------HhcCCeEEEEEEccccCChhh
Confidence            8999999999998886 2222 22211                                113689999999999863211


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        ................+++++++||+++.|++++++.+.+.
T Consensus       122 --~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         122 --EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             --HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence              11111111222333446889999999999999999988765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.39  E-value=9.8e-12  Score=127.26  Aligned_cols=158  Identities=18%  Similarity=0.192  Sum_probs=101.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC--------------------CCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP--------------------KPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~--------------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ..+|+++|..++|||||+.+|+......                    ...++.+..+.... .......+.++|+||+.
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~-~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE-KNENNRKITLIDTPGHE   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE-BTESSEEEEEEEESSSH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc-ccccccceeeccccccc
Confidence            4689999999999999999998632110                    11222332222222 11233489999999997


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .|.......    ..  .+|++|+|+|..+.-..  .....+..+.                                ..
T Consensus        82 ~f~~~~~~~----~~--~~D~ailvVda~~g~~~--~~~~~l~~~~--------------------------------~~  121 (188)
T PF00009_consen   82 DFIKEMIRG----LR--QADIAILVVDANDGIQP--QTEEHLKILR--------------------------------EL  121 (188)
T ss_dssp             HHHHHHHHH----HT--TSSEEEEEEETTTBSTH--HHHHHHHHHH--------------------------------HT
T ss_pred             ceeecccce----ec--ccccceeeeeccccccc--cccccccccc--------------------------------cc
Confidence            664433333    11  49999999999986542  2222222221                                23


Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC------CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG------ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G------a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|++||.||+|+..   .+-.+...+....+.+.++      ++++++||++|.|+++|.+.|.+.+
T Consensus       122 ~~p~ivvlNK~D~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  122 GIPIIVVLNKMDLIE---KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             T-SEEEEEETCTSSH---HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccceEEeeeeccchh---hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            689999999999961   1122233333335555543      4699999999999999999998875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.38  E-value=6.6e-12  Score=151.84  Aligned_cols=160  Identities=11%  Similarity=0.019  Sum_probs=103.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEE-eccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKS-GKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~-g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      ..+...|+|+|..++|||||+++|++...  ...++++.+....... ........+.+|||||++.|..++..+    +
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg----~  316 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRG----A  316 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHH----H
Confidence            44567899999999999999999987532  1223333322211222 111123489999999999888777655    1


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      .  .+|++|+|+|+++.... ...+.|..                                 ....++|++||+||+|+.
T Consensus       317 ~--~aDiaILVVDA~dGv~~-QT~E~I~~---------------------------------~k~~~iPiIVViNKiDl~  360 (742)
T CHL00189        317 N--VTDIAILIIAADDGVKP-QTIEAINY---------------------------------IQAANVPIIVAINKIDKA  360 (742)
T ss_pred             H--HCCEEEEEEECcCCCCh-hhHHHHHH---------------------------------HHhcCceEEEEEECCCcc
Confidence            1  49999999999885332 22222211                                 111368999999999985


Q ss_pred             CCCCcchhhhhHHHHHH---HHHHcC--CeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRY---LAHVNG--ASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~---la~~~G--a~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      ..    ....+.+.+..   ++..+|  ++++++||++|.|+++|++.|..+
T Consensus       361 ~~----~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        361 NA----NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             cc----CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence            21    11111222222   233444  689999999999999999888765

>KOG0070|consensus

Probab=99.38  E-value=2.4e-12  Score=129.81  Aligned_cols=160  Identities=16%  Similarity=0.223  Sum_probs=112.4

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      -.+.+|+++|-.|+||||++++|.-+ .....||+|..  .......   ...+++||.+|+++++.++..|    +.  
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfn--VE~v~yk---n~~f~vWDvGGq~k~R~lW~~Y----~~--   83 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFN--VETVEYK---NISFTVWDVGGQEKLRPLWKHY----FQ--   83 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccCCCccccc--eeEEEEc---ceEEEEEecCCCcccccchhhh----cc--
Confidence            35789999999999999999999765 34668999843  2233322   3379999999999999999999    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +.+++|+|+|.++.+++        .+.++.+..++.                ++     ..-++|+++.+||.|+...+
T Consensus        84 ~t~~lIfVvDS~Dr~Ri--------~eak~eL~~~l~----------------~~-----~l~~~~llv~aNKqD~~~al  134 (181)
T KOG0070|consen   84 NTQGLIFVVDSSDRERI--------EEAKEELHRMLA----------------EP-----ELRNAPLLVFANKQDLPGAL  134 (181)
T ss_pred             CCcEEEEEEeCCcHHHH--------HHHHHHHHHHHc----------------Cc-----ccCCceEEEEechhhccccC
Confidence            58999999999999887        223333322221                11     12368999999999986544


Q ss_pred             CcchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +..+   +.+.  +..++. ..-.+..|+|.+|.|+.+-.+++...+
T Consensus       135 s~~e---i~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~~~  177 (181)
T KOG0070|consen  135 SAAE---ITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSNNL  177 (181)
T ss_pred             CHHH---HHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHHHH
Confidence            3211   1111  111111 233588899999999999999998776

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.38  E-value=1.1e-11  Score=140.11  Aligned_cols=188  Identities=16%  Similarity=0.162  Sum_probs=118.1

Q ss_pred             CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649          2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK   78 (890)
Q Consensus         2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~   78 (890)
                      |.++|.|.+++.+. ........+      .....+|+|||.||||||||+|+|++.+   -...++++.|-......  
T Consensus       152 Gi~dLld~v~~~l~-~~e~~~~~~------~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e--  222 (444)
T COG1160         152 GIGDLLDAVLELLP-PDEEEEEEE------ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE--  222 (444)
T ss_pred             CHHHHHHHHHhhcC-Ccccccccc------cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE--
Confidence            56788899888864 111111110      1346899999999999999999999963   24446666663221111  


Q ss_pred             cccceEEEEEEcCCCcchhhHHh---hh----hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649         79 TVMKDICHLWELGSGTSRLEVAS---LF----SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVRE  151 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~Li~---~~----r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~  151 (890)
                       .+..++.+.||+|..+-..+..   .|    +...+.  .++++++|+|.+.+-+-  .-......             
T Consensus       223 -~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~--~a~vvllviDa~~~~~~--qD~~ia~~-------------  284 (444)
T COG1160         223 -RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIE--RADVVLLVIDATEGISE--QDLRIAGL-------------  284 (444)
T ss_pred             -ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHh--hcCEEEEEEECCCCchH--HHHHHHHH-------------
Confidence             1234799999999753221111   11    111122  48999999999998763  22222221             


Q ss_pred             hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHH-HHHcCCeEEEEeccCCCCHHHHHH
Q psy11649        152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHSSLDPGLVKRTRD  230 (890)
Q Consensus       152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~l-a~~~Ga~l~etSAK~~~nId~Lk~  230 (890)
                                         +...+.+++||.||+|+.+. +....+....++++. -+-..++++++||+++.++..+.+
T Consensus       285 -------------------i~~~g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~  344 (444)
T COG1160         285 -------------------IEEAGRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFE  344 (444)
T ss_pred             -------------------HHHcCCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHH
Confidence                               22347899999999999743 112233333344442 233358899999999999999988


Q ss_pred             HHHHHH
Q psy11649        231 ILNHYA  236 (890)
Q Consensus       231 ~I~~~l  236 (890)
                      .+....
T Consensus       345 ~i~~~~  350 (444)
T COG1160         345 AIKEIY  350 (444)
T ss_pred             HHHHHH
Confidence            886553

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.37  E-value=5.7e-12  Score=131.40  Aligned_cols=148  Identities=16%  Similarity=0.098  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEeccccce
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKTVMKD   83 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~~~k~   83 (890)
                      +|+|+|.+|+|||||+++|+......                                 ..+++++..+....   ..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~---~~~~   77 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS---TPKR   77 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe---cCCc
Confidence            58999999999999999998632211                                 12333332221111   1233


Q ss_pred             EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  163 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~  163 (890)
                      ++.+|||||+..|.......    +.  .+|++|+|+|.++...-  ........+..                      
T Consensus        78 ~~~liDTpG~~~~~~~~~~~----~~--~ad~~llVvD~~~~~~~--~~~~~~~~~~~----------------------  127 (208)
T cd04166          78 KFIIADTPGHEQYTRNMVTG----AS--TADLAILLVDARKGVLE--QTRRHSYILSL----------------------  127 (208)
T ss_pred             eEEEEECCcHHHHHHHHHHh----hh--hCCEEEEEEECCCCccH--hHHHHHHHHHH----------------------
Confidence            79999999987764332222    11  49999999999986532  22221111110                      


Q ss_pred             cccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHH
Q psy11649        164 EHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRT  228 (890)
Q Consensus       164 ~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~L  228 (890)
                                .++ ++|+|+||+|+... +.+....+..+++.++..+|.   +++++||+++.|+++.
T Consensus       128 ----------~~~~~iIvviNK~D~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         128 ----------LGIRHVVVAVNKMDLVDY-SEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             ----------cCCCcEEEEEEchhcccC-CHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence                      133 57889999998521 111223455667777777774   4899999999999854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.37  E-value=1e-11  Score=147.88  Aligned_cols=157  Identities=12%  Similarity=0.030  Sum_probs=100.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ..+..+|+++|..++|||||+++|.+...  ...++++.++........  ....+.+|||||++.|..+....    +.
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~--~~~~i~~iDTPGhe~F~~~r~rg----a~  157 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE--DGKMITFLDTPGHEAFTSMRARG----AK  157 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC--CCcEEEEEECCCCcchhhHHHhh----hc
Confidence            44567899999999999999999988532  223444444332222211  12279999999999988776554    11


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        .+|++|+|+|.++...- ...+.+..                                 ....++|+++++||+|+..
T Consensus       158 --~aDiaILVVda~dgv~~-qT~e~i~~---------------------------------~~~~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       158 --VTDIVVLVVAADDGVMP-QTIEAISH---------------------------------AKAANVPIIVAINKIDKPE  201 (587)
T ss_pred             --cCCEEEEEEECCCCCCH-hHHHHHHH---------------------------------HHHcCCCEEEEEECccccc
Confidence              48999999999874332 22222211                                 1123689999999999852


Q ss_pred             CCCcchhhhhHHHHHH---HHHHcC--CeEEEEeccCCCCHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCLRY---LAHVNG--ASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~---la~~~G--a~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      . +  . ......++.   .+..++  .+++++||++|.|++++++.|..
T Consensus       202 ~-~--~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       202 A-N--P-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             C-C--H-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            1 1  1 111122221   222333  47999999999999999888753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.35  E-value=9.6e-12  Score=143.37  Aligned_cols=153  Identities=14%  Similarity=0.032  Sum_probs=99.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~   80 (890)
                      ..++|+++|..++|||||+.+|+...+                                 ....+++++..+.....   
T Consensus         6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~---   82 (426)
T TIGR00483         6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET---   82 (426)
T ss_pred             ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc---
Confidence            468999999999999999999985211                                 11235555654433322   


Q ss_pred             cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                      .+..++|||+||++.|.......    +.  ++|++|+|+|+++.++.  ....+...+. ...                
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~----~~--~aD~~ilVvDa~~~~~~--~~~~t~~~~~-~~~----------------  137 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITG----AS--QADAAVLVVAVGDGEFE--VQPQTREHAF-LAR----------------  137 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhh----hh--hCCEEEEEEECCCCCcc--cCCchHHHHH-HHH----------------
Confidence            23479999999987663322222    12  49999999999998543  1111111110 000                


Q ss_pred             ccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649        161 TADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR  227 (890)
Q Consensus       161 ~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~  227 (890)
                                  .++ .|++||+||+|+.. .+.+....+..+++.+++.+|     ++++++||++|.|+++
T Consensus       138 ------------~~~~~~iIVviNK~Dl~~-~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       138 ------------TLGINQLIVAINKMDSVN-YDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ------------HcCCCeEEEEEEChhccC-ccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                        012 47999999999852 222334456677888888776     5799999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.34  E-value=2.2e-11  Score=145.74  Aligned_cols=155  Identities=17%  Similarity=0.076  Sum_probs=102.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCC---------C--------CCCccceeEEEEEEec--cccceEEEEEEcCCCcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDT---------P--------KPTLALEYIYARKSGK--TVMKDICHLWELGSGTS   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~---------~--------kptigvdY~f~~~~g~--~~~k~~l~IwDlpG~~~   95 (890)
                      -.+|+++|..++|||||+.+|+...+.         +        ..++++..........  ......+++|||||+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            468999999999999999999863210         0        1122221111111111  12234899999999998


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                      |...+..+    +.  .+|++|+|+|+++..+. ..+..|....                                 ..+
T Consensus        87 F~~~v~~s----l~--~aD~aILVVDas~gv~~-qt~~~~~~~~---------------------------------~~~  126 (600)
T PRK05433         87 FSYEVSRS----LA--ACEGALLVVDASQGVEA-QTLANVYLAL---------------------------------END  126 (600)
T ss_pred             HHHHHHHH----HH--HCCEEEEEEECCCCCCH-HHHHHHHHHH---------------------------------HCC
Confidence            87666655    22  49999999999997665 4444554311                                 126


Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+++|+||+|+...    ..   .....+++..+++.   ++++||++|.|++++.+.|.+.+
T Consensus       127 lpiIvViNKiDl~~a----~~---~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        127 LEIIPVLNKIDLPAA----DP---ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             CCEEEEEECCCCCcc----cH---HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence            899999999998421    11   12234455555654   89999999999999999998775

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.34  E-value=1.6e-11  Score=149.65  Aligned_cols=157  Identities=11%  Similarity=0.003  Sum_probs=101.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ..+...|+|+|..++|||||+++|.+...  ...++++.+........   .+..+.+|||||+..|..+....    ..
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~---~~~~ItfiDTPGhe~F~~m~~rg----a~  359 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET---NGGKITFLDTPGHEAFTAMRARG----AQ  359 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE---CCEEEEEEECCCCccchhHHHhh----hh
Confidence            45667899999999999999999987432  22233332221111111   12479999999999987777654    11


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        .+|++|+|+|.++...- ...+.|..                                 ....++|+|||+||+|+..
T Consensus       360 --~aDiaILVVdAddGv~~-qT~e~i~~---------------------------------a~~~~vPiIVviNKiDl~~  403 (787)
T PRK05306        360 --VTDIVVLVVAADDGVMP-QTIEAINH---------------------------------AKAAGVPIIVAINKIDKPG  403 (787)
T ss_pred             --hCCEEEEEEECCCCCCH-hHHHHHHH---------------------------------HHhcCCcEEEEEECccccc
Confidence              38999999999884321 12222211                                 1123689999999999842


Q ss_pred             CCCcchhhhhHHHH---HHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCL---RYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       190 d~d~e~r~~i~~~l---r~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      . +  ... +..++   ..++..+|  ++++++||++|.|+++|++.|...
T Consensus       404 a-~--~e~-V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        404 A-N--PDR-VKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             c-C--HHH-HHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            1 1  111 11122   22344555  689999999999999999888653

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.34  E-value=1.4e-11  Score=139.76  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh---h-c
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF---S-S  105 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~---r-~  105 (890)
                      ..-++++++|.||||||||+|.|++++.   ...|+++-|+--.   .-+..+..+++.||+|...-.+.+...   | .
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee---~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~  291 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE---DINLNGIPVRLVDTAGIRETDDVVERIGIERAK  291 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEE---EEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence            3458999999999999999999999743   3447777664221   222334589999999988776666655   2 1


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      +.+.  .||.|++|+|.+.+.+-.+....+                                   ....+.|+++|.||.
T Consensus       292 ~~i~--~ADlvL~v~D~~~~~~~~d~~~~~-----------------------------------~~~~~~~~i~v~NK~  334 (454)
T COG0486         292 KAIE--EADLVLFVLDASQPLDKEDLALIE-----------------------------------LLPKKKPIIVVLNKA  334 (454)
T ss_pred             HHHH--hCCEEEEEEeCCCCCchhhHHHHH-----------------------------------hcccCCCEEEEEech
Confidence            2222  699999999999974421111111                                   012368999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      |+.....          ...+....+.+++.+|++++.|++.|++.|.+...
T Consensus       335 DL~~~~~----------~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~  376 (454)
T COG0486         335 DLVSKIE----------LESEKLANGDAIISISAKTGEGLDALREAIKQLFG  376 (454)
T ss_pred             hcccccc----------cchhhccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence            9964211          11111223446899999999999999999999873

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.31  E-value=2.3e-11  Score=140.16  Aligned_cols=154  Identities=16%  Similarity=0.135  Sum_probs=97.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~   80 (890)
                      ..++|+++|.+++|||||+++|+....                                 ...++++++..+.....   
T Consensus         5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~---   81 (425)
T PRK12317          5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET---   81 (425)
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec---
Confidence            468999999999999999999985211                                 11345555544333222   


Q ss_pred             cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                      .+.++.+|||||+..|.......    +.  ++|++|+|+|.+++..+......+...+.                    
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~----~~--~aD~~ilVvDa~~~~~~~~~~~~~~~~~~--------------------  135 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITG----AS--QADAAVLVVAADDAGGVMPQTREHVFLAR--------------------  135 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhc----hh--cCCEEEEEEEcccCCCCCcchHHHHHHHH--------------------
Confidence            23489999999987664322111    11  49999999999973222111112221111                    


Q ss_pred             ccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHHH
Q psy11649        161 TADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRTR  229 (890)
Q Consensus       161 ~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~Lk  229 (890)
                                  ..++ |++||+||+|+.. .+.+....+.++++.++...|     ++++++||++|.|++++.
T Consensus       136 ------------~~~~~~iivviNK~Dl~~-~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        136 ------------TLGINQLIVAINKMDAVN-YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             ------------HcCCCeEEEEEEcccccc-ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                        1233 6999999999853 111122345566777777666     469999999999998743

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.31  E-value=3.3e-11  Score=144.45  Aligned_cols=155  Identities=14%  Similarity=0.078  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC-----CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK-----NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~-----~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      -|+++|..++|||||+++|++.     .+..+.+++++..|......  .+..+.+||+||+++|.......    +  .
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~--~g~~i~~IDtPGhe~fi~~m~~g----~--~   73 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP--DGRVLGFIDVPGHEKFLSNMLAG----V--G   73 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC--CCcEEEEEECCCHHHHHHHHHHH----h--h
Confidence            4789999999999999999973     12344566666554433211  22368999999998773332222    1  2


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc-EEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d  190 (890)
                      ++|++++|+|.++...  ......+..+                                ..+++| ++||+||+|+.. 
T Consensus        74 ~~D~~lLVVda~eg~~--~qT~ehl~il--------------------------------~~lgi~~iIVVlNKiDlv~-  118 (614)
T PRK10512         74 GIDHALLVVACDDGVM--AQTREHLAIL--------------------------------QLTGNPMLTVALTKADRVD-  118 (614)
T ss_pred             cCCEEEEEEECCCCCc--HHHHHHHHHH--------------------------------HHcCCCeEEEEEECCccCC-
Confidence            5999999999987432  1111112111                                123566 579999999852 


Q ss_pred             CCcchhhhhHHHHHHHHHHcC---CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~G---a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .+.......+++.+....+   ++++++||++|.|++.|++.|....
T Consensus       119 --~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        119 --EARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence              1223334456666666555   6799999999999999999998764

>cd04128 Spg1 Spg1p

Probab=99.28  E-value=2e-11  Score=124.79  Aligned_cols=132  Identities=26%  Similarity=0.441  Sum_probs=106.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+.+|+..+..+...  .+.    ...++++|+|+|++.++ +.++.|+..++.+..                    
T Consensus        51 l~iwDt~G~~~~~~~~~~--~~~----~a~~iilv~D~t~~~s~-~~i~~~~~~~~~~~~--------------------  103 (182)
T cd04128          51 FSIWDLGGQREFINMLPL--VCN----DAVAILFMFDLTRKSTL-NSIKEWYRQARGFNK--------------------  103 (182)
T ss_pred             EEEEeCCCchhHHHhhHH--HCc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            589999999777665554  222    22378999999999998 888999987654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+| |+||||+|+..+++++.+..+....+.+|..+|++.|.||+|.
T Consensus       104 --------------------------------~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~  150 (182)
T cd04128         104 --------------------------------TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSH  150 (182)
T ss_pred             --------------------------------CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            0256 5789999998777766666667889999999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCCCCcceecccCCce
Q psy11649        553 PGLVKRTRDILNHYAFSSHLASAVNFDYNKPI  584 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~i  584 (890)
                      +.|++.+++.+.-.+|+.|...+.....++|+
T Consensus       151 g~~v~~lf~~l~~~l~~~~~~~~~~~~~~~~~  182 (182)
T cd04128         151 SINVQKIFKIVLAKAFDLPLTIPEILTVGEPI  182 (182)
T ss_pred             CCCHHHHHHHHHHHHHhcCCChhhhcCCCCCC
Confidence            99999999999999999999999888777764

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.28  E-value=3.8e-11  Score=130.63  Aligned_cols=160  Identities=19%  Similarity=0.222  Sum_probs=106.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce-EEEEEEcCCCcc--hhhHHhh---
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD-ICHLWELGSGTS--RLEVASL---  102 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~-~l~IwDlpG~~~--~~~Li~~---  102 (890)
                      .+...+|+|.|.||||||||++++++    .+|.++ +|.|+++.   |....+. ++|++||||.-.  +++....   
T Consensus       165 dp~~pTivVaG~PNVGKSSlv~~lT~----AkpEvA-~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q  239 (346)
T COG1084         165 DPDLPTIVVAGYPNVGKSSLVRKLTT----AKPEVA-PYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ  239 (346)
T ss_pred             CCCCCeEEEecCCCCcHHHHHHHHhc----CCCccC-CCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH
Confidence            44578999999999999999999999    566666 78888776   5444444 999999999621  1111110   


Q ss_pred             -hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649        103 -FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI  181 (890)
Q Consensus       103 -~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV  181 (890)
                       ...-..-   +++|++++|.|...-|  .++.-...+.+...                            .+..|+++|
T Consensus       240 Ai~AL~hl---~~~IlF~~D~Se~cgy--~lE~Q~~L~~eIk~----------------------------~f~~p~v~V  286 (346)
T COG1084         240 AILALRHL---AGVILFLFDPSETCGY--SLEEQISLLEEIKE----------------------------LFKAPIVVV  286 (346)
T ss_pred             HHHHHHHh---cCeEEEEEcCccccCC--CHHHHHHHHHHHHH----------------------------hcCCCeEEE
Confidence             0000122   6899999999987665  55544433322211                            134799999


Q ss_pred             eecccCCCCCCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        182 GGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .||+|+..   .+..    ++++.....- +.....+++.++.+++.+++.+...+
T Consensus       287 ~nK~D~~~---~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         287 INKIDIAD---EEKL----EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTA  335 (346)
T ss_pred             Eecccccc---hhHH----HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHh
Confidence            99999852   1111    2222223333 34477889999999999988887764

>KOG0071|consensus

Probab=99.28  E-value=3.6e-11  Score=115.90  Aligned_cols=159  Identities=16%  Similarity=0.244  Sum_probs=110.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++++|+.+|-.++||||++.+|+-+ ..+..||+|  |...+++.++   .++++||++|+.+.+.++..|    |.  +
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvG--FnvetVtykN---~kfNvwdvGGqd~iRplWrhY----y~--g   84 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQDKIRPLWRHY----YT--G   84 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcccccccc--eeEEEEEeee---eEEeeeeccCchhhhHHHHhh----cc--C
Confidence            4789999999999999999999864 557778888  3333444333   379999999999999999999    33  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ..++|+|+|..+..++    +.-.+++.+.+..                         -.....|++|.+||.|+.....
T Consensus        85 tqglIFV~Dsa~~dr~----eeAr~ELh~ii~~-------------------------~em~~~~~LvlANkQDlp~A~~  135 (180)
T KOG0071|consen   85 TQGLIFVVDSADRDRI----EEARNELHRIIND-------------------------REMRDAIILILANKQDLPDAMK  135 (180)
T ss_pred             CceEEEEEeccchhhH----HHHHHHHHHHhCC-------------------------HhhhcceEEEEecCcccccccC
Confidence            8899999999888665    3333333333322                         1123589999999999964332


Q ss_pred             cchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.+   ++..  +.. ++...-.+..++|.++.++.+-..++.+.+
T Consensus       136 pqe---i~d~leLe~-~r~~~W~vqp~~a~~gdgL~eglswlsnn~  177 (180)
T KOG0071|consen  136 PQE---IQDKLELER-IRDRNWYVQPSCALSGDGLKEGLSWLSNNL  177 (180)
T ss_pred             HHH---HHHHhcccc-ccCCccEeeccccccchhHHHHHHHHHhhc
Confidence            211   1111  111 122234588999999999988877776654

>KOG1489|consensus

Probab=99.27  E-value=6.8e-11  Score=127.75  Aligned_cols=156  Identities=19%  Similarity=0.228  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce--EEEEEEcCCCcchhh----HHhhh-hc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD--ICHLWELGSGTSRLE----VASLF-SS  105 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~--~l~IwDlpG~~~~~~----Li~~~-r~  105 (890)
                      ..|-+||-||+|||||+++++.    .+|-++ +|.|++..   +....++  ++.|=|+||...-..    +-..| +.
T Consensus       197 advGLVG~PNAGKSTLL~als~----AKpkVa-~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrH  271 (366)
T KOG1489|consen  197 ADVGLVGFPNAGKSTLLNALSR----AKPKVA-HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRH  271 (366)
T ss_pred             cccceecCCCCcHHHHHHHhhc----cCCccc-ccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHH
Confidence            3467999999999999999998    678887 88888877   3333333  699999999764322    22223 22


Q ss_pred             cccccccCcEEEEEEeCCCcC--chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLN--SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~--S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                          +..+..+++|+|++.+.  +-|+.+.....++..+-+.+                           ...|.++|+|
T Consensus       272 ----iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L---------------------------~~rp~liVaN  320 (366)
T KOG1489|consen  272 ----IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL---------------------------ADRPALIVAN  320 (366)
T ss_pred             ----HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh---------------------------ccCceEEEEe
Confidence                12389999999999871  22366666666665543331                           1479999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHH
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      |+|+.+     ..   ...+.+++.++.-+ ++.+||+++++++++.+.|.+.
T Consensus       321 KiD~~e-----ae---~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  321 KIDLPE-----AE---KNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             ccCchh-----HH---HHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence            999841     21   12357777777544 9999999999999998877653

>KOG0076|consensus

Probab=99.27  E-value=8.5e-12  Score=124.27  Aligned_cols=155  Identities=16%  Similarity=0.192  Sum_probs=108.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC-C--------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK-N--------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSS  105 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~-~--------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~  105 (890)
                      ++.|+++|..|+|||||+-++-.. .        ...-+|+|+..  .++...   ...+++||++|++++++++..|  
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~---~~~l~fwdlgGQe~lrSlw~~y--   89 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC---NAPLSFWDLGGQESLRSLWKKY--   89 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec---cceeEEEEcCChHHHHHHHHHH--
Confidence            577999999999999999887552 1        23346677542  122222   3489999999999999999998  


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                        |.  -++++|+++|.+++++|.++-..+-..+....                             -.++|+++.+||.
T Consensus        90 --Y~--~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-----------------------------leg~p~L~lankq  136 (197)
T KOG0076|consen   90 --YW--LAHGIIYVIDATDRERFEESKTAFEKVVENEK-----------------------------LEGAPVLVLANKQ  136 (197)
T ss_pred             --HH--HhceeEEeecCCCHHHHHHHHHHHHHHHHHHH-----------------------------hcCCchhhhcchh
Confidence              22  38999999999999998333222222222211                             1379999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHH---HHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYL---AHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~l---a~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+....       ...+++..   +...   .+++..+||.+|+||++-.+++...+
T Consensus       137 d~q~~~-------~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~  186 (197)
T KOG0076|consen  137 DLQNAM-------EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL  186 (197)
T ss_pred             hhhhhh-------hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence            984211       12222221   2232   36799999999999999988888776

>cd04167 Snu114p Snu114p subfamily

Probab=99.26  E-value=8.9e-11  Score=122.74  Aligned_cols=150  Identities=14%  Similarity=0.122  Sum_probs=91.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC---------------------CCCccceeEEEEEE--eccccceEEEEEEcCCC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTP---------------------KPTLALEYIYARKS--GKTVMKDICHLWELGSG   93 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~---------------------kptigvdY~f~~~~--g~~~~k~~l~IwDlpG~   93 (890)
                      +|+++|..++|||||+++|+......                     ..++++........  ........+++|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            69999999999999999998732110                     01111110000110  01122348999999999


Q ss_pred             cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      ..+......+    +.  .+|++|+|+|.++..+.  ....|++.+..                                
T Consensus        82 ~~f~~~~~~~----~~--~aD~~llVvD~~~~~~~--~~~~~~~~~~~--------------------------------  121 (213)
T cd04167          82 VNFMDEVAAA----LR--LSDGVVLVVDVVEGVTS--NTERLIRHAIL--------------------------------  121 (213)
T ss_pred             cchHHHHHHH----HH--hCCEEEEEEECCCCCCH--HHHHHHHHHHH--------------------------------
Confidence            8886655544    11  39999999999988775  33334332211                                


Q ss_pred             CCCcEEEEeecccCCC-C--CCc----chhhhhHHHHHHHHHHcCC-------e----EEEEeccCCCCHH
Q psy11649        174 FPVPLILIGGKYDLFE-N--LEP----NKKRIAVQCLRYLAHVNGA-------S----LLFHSSLDPGLVK  226 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~-d--~d~----e~r~~i~~~lr~la~~~Ga-------~----l~etSAK~~~nId  226 (890)
                      .++|+++|+||+|+.. +  +++    +....+.+.+..++..+++       +    +++.|++.+-+++
T Consensus       122 ~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~  192 (213)
T cd04167         122 EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT  192 (213)
T ss_pred             cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence            1589999999999751 0  111    1222334456666665543       2    7789999887664

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.25  E-value=1.3e-10  Score=123.08  Aligned_cols=157  Identities=13%  Similarity=0.089  Sum_probs=93.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCC----------------Ccc-------ceeEEEEE--------------Eecc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTPKP----------------TLA-------LEYIYARK--------------SGKT   79 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~kp----------------tig-------vdY~f~~~--------------~g~~   79 (890)
                      ||+++|+.++|||||+++|+.+......                +.+       +.|.+...              ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            5899999999999999999963211100                000       11110000              0000


Q ss_pred             ccceEEEEEEcCCCcchhhHHh-hhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649         80 VMKDICHLWELGSGTSRLEVAS-LFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH  158 (890)
Q Consensus        80 ~~k~~l~IwDlpG~~~~~~Li~-~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~  158 (890)
                      .....+.+.||||...|..-.. ....  ..   +|++++|+|++....  .....++..+.                  
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~--~~---~D~~llVvda~~g~~--~~d~~~l~~l~------------------  135 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTG--YA---PDYAMLVVAANAGII--GMTKEHLGLAL------------------  135 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcc--cC---CCEEEEEEECCCCCc--HHHHHHHHHHH------------------
Confidence            1123789999999977633222 1110  12   899999999987544  23233333221                  


Q ss_pred             ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH--------------------------cCC
Q psy11649        159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--------------------------NGA  212 (890)
Q Consensus       159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~--------------------------~Ga  212 (890)
                                    ..++|+++|.||+|+..   .+........+.++...                          ..+
T Consensus       136 --------------~~~ip~ivvvNK~D~~~---~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~  198 (224)
T cd04165         136 --------------ALNIPVFVVVTKIDLAP---ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIV  198 (224)
T ss_pred             --------------HcCCCEEEEEECccccC---HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccC
Confidence                          13689999999999852   11222223333333221                          124


Q ss_pred             eEEEEeccCCCCHHHHHHHHHHH
Q psy11649        213 SLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       213 ~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      ++|.+||.+|.|+++|+++|..+
T Consensus       199 pi~~vSavtg~Gi~~L~~~L~~l  221 (224)
T cd04165         199 PIFQVSNVTGEGLDLLHAFLNLL  221 (224)
T ss_pred             cEEEeeCCCccCHHHHHHHHHhc
Confidence            89999999999999999998765

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.25  E-value=7.9e-11  Score=140.22  Aligned_cols=158  Identities=11%  Similarity=0.058  Sum_probs=95.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC------CCCCccceeEEEEEE-ecc-----------ccc-eEEEEEEcCCCcchh
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDT------PKPTLALEYIYARKS-GKT-----------VMK-DICHLWELGSGTSRL   97 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~------~kptigvdY~f~~~~-g~~-----------~~k-~~l~IwDlpG~~~~~   97 (890)
                      -|+++|.+++|||||+++|++....      ...++|..+  .... ...           ..+ ..+.+|||||++.|.
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~--v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATE--IPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeE--eeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            5999999999999999999985321      222334222  1111 100           000 148899999999888


Q ss_pred             hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc
Q psy11649         98 EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP  177 (890)
Q Consensus        98 ~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP  177 (890)
                      .+...+    ++  .+|++++|+|+++..+. .+.+.+ +.++                                ..++|
T Consensus        84 ~l~~~~----~~--~aD~~IlVvD~~~g~~~-qt~e~i-~~l~--------------------------------~~~vp  123 (590)
T TIGR00491        84 NLRKRG----GA--LADLAILIVDINEGFKP-QTQEAL-NILR--------------------------------MYKTP  123 (590)
T ss_pred             HHHHHH----Hh--hCCEEEEEEECCcCCCH-hHHHHH-HHHH--------------------------------HcCCC
Confidence            877665    12  49999999999973221 111111 1111                                12689


Q ss_pred             EEEEeecccCCCCCCcc-----------hhhhh--------HHHHHHHHH------------Hc--CCeEEEEeccCCCC
Q psy11649        178 LILIGGKYDLFENLEPN-----------KKRIA--------VQCLRYLAH------------VN--GASLLFHSSLDPGL  224 (890)
Q Consensus       178 iIVVgNK~Dl~~d~d~e-----------~r~~i--------~~~lr~la~------------~~--Ga~l~etSAK~~~n  224 (890)
                      +++|+||+|+.......           ....+        ...+.+++.            .+  .++++++||++|+|
T Consensus       124 iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeG  203 (590)
T TIGR00491       124 FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEG  203 (590)
T ss_pred             EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCC
Confidence            99999999986321100           00000        001112221            12  25799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy11649        225 VKRTRDILNHYA  236 (890)
Q Consensus       225 Id~Lk~~I~~~l  236 (890)
                      +++|.+.|..+.
T Consensus       204 ideLl~~l~~l~  215 (590)
T TIGR00491       204 IPELLTMLAGLA  215 (590)
T ss_pred             hhHHHHHHHHHH
Confidence            999998886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=119.63  Aligned_cols=151  Identities=17%  Similarity=0.233  Sum_probs=97.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC----CCCCCCccceeEEEEEEeccccceEEEEEEcCCC----------cchhhH
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG----------TSRLEV   99 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~----------~~~~~L   99 (890)
                      ...-|+++|.+|||||||||.|+++.    .+-.|+.+-...|..      -...+.+.|+||-          +....+
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~------~~~~~~lVDlPGYGyAkv~k~~~e~w~~~   96 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE------VDDELRLVDLPGYGYAKVPKEVKEKWKKL   96 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE------ecCcEEEEeCCCcccccCCHHHHHHHHHH
Confidence            34579999999999999999999953    122354442222211      1124899999993          233556


Q ss_pred             Hhhh--hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649        100 ASLF--SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus       100 i~~~--r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      +..|  ..+++.     ++++++|...+-.-.+ .+..|+.                                   ..++
T Consensus        97 i~~YL~~R~~L~-----~vvlliD~r~~~~~~D~em~~~l~-----------------------------------~~~i  136 (200)
T COG0218          97 IEEYLEKRANLK-----GVVLLIDARHPPKDLDREMIEFLL-----------------------------------ELGI  136 (200)
T ss_pred             HHHHHhhchhhe-----EEEEEEECCCCCcHHHHHHHHHHH-----------------------------------HcCC
Confidence            6666  222344     8999999988655311 2222222                                   2379


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHHH----HcCCe--EEEEeccCCCCHHHHHHHHHHHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAH----VNGAS--LLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~----~~Ga~--l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |++||+||+|....   .++   ...+...+.    .....  ++.+|+.++.|++++++.|...+
T Consensus       137 ~~~vv~tK~DKi~~---~~~---~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         137 PVIVVLTKADKLKK---SER---NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             CeEEEEEccccCCh---hHH---HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence            99999999998731   112   222333333    23333  78889999999999999998775

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.24  E-value=7.4e-11  Score=135.32  Aligned_cols=161  Identities=12%  Similarity=0.101  Sum_probs=98.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-----CCC--CCccceeEEEE--------------EE-e--c---c-ccceEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-----TPK--PTLALEYIYAR--------------KS-G--K---T-VMKDIC   85 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~k--ptigvdY~f~~--------------~~-g--~---~-~~k~~l   85 (890)
                      ..++|+++|..++|||||+.+|++...     ...  -|+.+.|.+..              .. .  .   . .....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            468999999999999999999986311     111  12222221110              00 0  0   0 012379


Q ss_pred             EEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccc
Q psy11649         86 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH  165 (890)
Q Consensus        86 ~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~  165 (890)
                      .+||+||++.|.......    .  ..+|++|+|+|.++.... ......+..+.                         
T Consensus        83 ~liDtPGh~~f~~~~~~g----~--~~aD~aIlVVDa~~g~~~-~qt~e~l~~l~-------------------------  130 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSG----A--ALMDGALLVIAANEPCPQ-PQTKEHLMALE-------------------------  130 (406)
T ss_pred             EEEECCCHHHHHHHHHHH----H--HHCCEEEEEEECCCCccc-cchHHHHHHHH-------------------------
Confidence            999999998774433333    1  138999999999975311 11122222111                         


Q ss_pred             cccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        166 RDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       166 ~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                             .++ .|+++|+||+|+..   .+.......+++.+...+   +++++++||+++.|+++|+++|...+
T Consensus       131 -------~~gi~~iIVvvNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       131 -------IIGIKNIVIVQNKIDLVS---KEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             -------HcCCCeEEEEEEccccCC---HHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence                   112 36899999999863   112222234445554443   67899999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.23  E-value=1.7e-10  Score=129.02  Aligned_cols=160  Identities=18%  Similarity=0.108  Sum_probs=103.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSFS  107 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~~  107 (890)
                      .-..|.++|..|+|||||+|+|++...  ...--.+++-+  ++.....++..+-+-||.|..+-  ..++..|  +-+.
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt--tR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE  268 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPT--TRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE  268 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCc--eeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH
Confidence            367899999999999999999998421  11111222321  22222222347899999996543  5666666  3222


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      ..  .+|+++.|+|.|+|.-. ..+..-.+.+.+                             +.-..+|+|+|.||+|+
T Consensus       269 ~~--~aDlllhVVDaSdp~~~-~~~~~v~~vL~e-----------------------------l~~~~~p~i~v~NKiD~  316 (411)
T COG2262         269 VK--EADLLLHVVDASDPEIL-EKLEAVEDVLAE-----------------------------IGADEIPIILVLNKIDL  316 (411)
T ss_pred             hh--cCCEEEEEeecCChhHH-HHHHHHHHHHHH-----------------------------cCCCCCCEEEEEecccc
Confidence            22  49999999999999432 444333333322                             23335899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ..+..         .+..+....+ ..+++||+++.|++.|++.|...+.
T Consensus       317 ~~~~~---------~~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         317 LEDEE---------ILAELERGSP-NPVFISAKTGEGLDLLRERIIELLS  356 (411)
T ss_pred             cCchh---------hhhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence            63211         1222222223 5799999999999999999999874

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.20  E-value=4.3e-10  Score=116.64  Aligned_cols=146  Identities=12%  Similarity=0.056  Sum_probs=90.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC------CC------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK------ND------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR   96 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~------~~------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~   96 (890)
                      ..+|+++|..++|||||+++|+..      ..            ....+++++-.....   ...+.++.+.||||...|
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~---~~~~~~i~~iDtPG~~~~   78 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY---ETANRHYAHVDCPGHADY   78 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEe---cCCCeEEEEEECcCHHHH
Confidence            478999999999999999999863      00            012333333221111   112337899999998655


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ..-....    +.  .+|++++|+|.+....-  .....+..+.                                ..++
T Consensus        79 ~~~~~~~----~~--~~D~~ilVvda~~g~~~--~~~~~~~~~~--------------------------------~~~~  118 (195)
T cd01884          79 IKNMITG----AA--QMDGAILVVSATDGPMP--QTREHLLLAR--------------------------------QVGV  118 (195)
T ss_pred             HHHHHHH----hh--hCCEEEEEEECCCCCcH--HHHHHHHHHH--------------------------------HcCC
Confidence            3222222    11  49999999999875331  2222222221                                2367


Q ss_pred             c-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCH
Q psy11649        177 P-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLV  225 (890)
Q Consensus       177 P-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nI  225 (890)
                      | +++|.||+|+..  +.+..+.+..+++++....|     ++++++||++|.|+
T Consensus       119 ~~iIvviNK~D~~~--~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         119 PYIVVFLNKADMVD--DEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             CcEEEEEeCCCCCC--cHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            7 789999999862  11223334556666666654     67999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.17  E-value=3.3e-10  Score=135.25  Aligned_cols=158  Identities=10%  Similarity=0.058  Sum_probs=94.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCccceeEEEEEE----ecccc----c---eEEEEEEcCCCcchh
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND------TPKPTLALEYIYARKS----GKTVM----K---DICHLWELGSGTSRL   97 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~------~~kptigvdY~f~~~~----g~~~~----k---~~l~IwDlpG~~~~~   97 (890)
                      ...|+++|.+|+|||||+++|.+...      .+..++|..+......    +....    +   ..+.+|||||++.|.
T Consensus         6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~   85 (586)
T PRK04004          6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT   85 (586)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence            44699999999999999999987421      1122344322110000    10000    0   027899999999887


Q ss_pred             hHHhhhhccccccccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         98 EVASLFSSFSLTAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        98 ~Li~~~r~~~~~~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .+....    +.  .+|++|+|+|+++   +.++ +.+.    .++                                ..
T Consensus        86 ~~~~~~----~~--~aD~~IlVvDa~~g~~~qt~-e~i~----~~~--------------------------------~~  122 (586)
T PRK04004         86 NLRKRG----GA--LADIAILVVDINEGFQPQTI-EAIN----ILK--------------------------------RR  122 (586)
T ss_pred             HHHHHh----Hh--hCCEEEEEEECCCCCCHhHH-HHHH----HHH--------------------------------Hc
Confidence            776654    11  4999999999998   4443 2221    111                                12


Q ss_pred             CCcEEEEeecccCCCCCCcch-----------hhhhHH--------HHHHHHH------------Hc--CCeEEEEeccC
Q psy11649        175 PVPLILIGGKYDLFENLEPNK-----------KRIAVQ--------CLRYLAH------------VN--GASLLFHSSLD  221 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~-----------r~~i~~--------~lr~la~------------~~--Ga~l~etSAK~  221 (890)
                      ++|+++|+||+|+........           ......        ....++.            .+  .++++++||++
T Consensus       123 ~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t  202 (586)
T PRK04004        123 KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT  202 (586)
T ss_pred             CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence            689999999999852111000           000010        1112221            11  25799999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy11649        222 PGLVKRTRDILNHY  235 (890)
Q Consensus       222 ~~nId~Lk~~I~~~  235 (890)
                      |.|+++|.+.+...
T Consensus       203 GeGi~dLl~~i~~~  216 (586)
T PRK04004        203 GEGIPDLLMVLAGL  216 (586)
T ss_pred             CCChHHHHHHHHHH
Confidence            99999998887543

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.17  E-value=2.7e-10  Score=130.88  Aligned_cols=159  Identities=13%  Similarity=0.140  Sum_probs=97.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC--C---CCCCCCccceeEEEE-----------------EEec---c---ccceEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK--N---DTPKPTLALEYIYAR-----------------KSGK---T---VMKDIC   85 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~--~---~~~kptigvdY~f~~-----------------~~g~---~---~~k~~l   85 (890)
                      ..++|+++|..++|||||+.+|++.  +   .....+++++..|..                 ....   .   ....++
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            4689999999999999999999763  1   111222332221110                 0000   0   002379


Q ss_pred             EEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649         86 HLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  163 (890)
Q Consensus        86 ~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~  163 (890)
                      ++|||||++.|..   .+ +.    ...+|++++|+|++++. .- .....+ ..+..                      
T Consensus        88 ~liDtPG~~~f~~---~~~~~----~~~~D~~llVVDa~~~~~~~-~t~~~l-~~l~~----------------------  136 (411)
T PRK04000         88 SFVDAPGHETLMA---TMLSG----AALMDGAILVIAANEPCPQP-QTKEHL-MALDI----------------------  136 (411)
T ss_pred             EEEECCCHHHHHH---HHHHH----HhhCCEEEEEEECCCCCCCh-hHHHHH-HHHHH----------------------
Confidence            9999999876533   23 11    01379999999999753 21 122221 11110                      


Q ss_pred             cccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        164 EHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       164 ~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                                .++ |+++|+||+|+...   +........++.++..+   +.+++++||+++.|+++|++.|...+
T Consensus       137 ----------~~i~~iiVVlNK~Dl~~~---~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        137 ----------IGIKNIVIVQNKIDLVSK---ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             ----------cCCCcEEEEEEeeccccc---hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence                      123 68999999998631   12222234455555443   57899999999999999999998765

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.17  E-value=7.3e-10  Score=111.96  Aligned_cols=155  Identities=19%  Similarity=0.252  Sum_probs=107.2

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC----------CCCC----CCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN----------DTPK----PTLALEYIYARKSGKTVMKDICHLWELGSGTSR   96 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~----------~~~k----ptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~   96 (890)
                      .+..+.||+|+|.-++||||++.++..+.          ..++    .|++.||  .....  .++..+++++||||.+|
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~--g~~~~--~~~~~v~LfgtPGq~RF   81 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDF--GSIEL--DEDTGVHLFGTPGQERF   81 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecc--cceEE--cCcceEEEecCCCcHHH
Confidence            45678899999999999999999998852          1222    2444443  23332  22237999999999999


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      .-++..+      +.++.++|+++|.+.+..+  .-...+..+.                              ... .+
T Consensus        82 ~fm~~~l------~~ga~gaivlVDss~~~~~--~a~~ii~f~~------------------------------~~~-~i  122 (187)
T COG2229          82 KFMWEIL------SRGAVGAIVLVDSSRPITF--HAEEIIDFLT------------------------------SRN-PI  122 (187)
T ss_pred             HHHHHHH------hCCcceEEEEEecCCCcch--HHHHHHHHHh------------------------------hcc-CC
Confidence            9999999      2369999999999999886  2222222111                              111 29


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHH-HH-cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLA-HV-NGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~-~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      |++|++||.|+.....++       .++++- .. ...+++.++|+++.+..+..+.+...
T Consensus       123 p~vVa~NK~DL~~a~ppe-------~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         123 PVVVAINKQDLFDALPPE-------KIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CEEEEeeccccCCCCCHH-------HHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            999999999997533322       233322 22 37889999999999887765554433

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.17  E-value=5.5e-10  Score=115.55  Aligned_cols=163  Identities=12%  Similarity=0.121  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccc-eeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLAL-EYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQ  111 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigv-dY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~  111 (890)
                      ++|+|+|.+|||||||+|.|++....  ...+++. +.+.............+.+||+||..........+ +...+.  
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~--   79 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS--   79 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc--
Confidence            58999999999999999999984221  1122221 11100000011111268999999975432222333 221222  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++++|.| ....   +.-..|++.+++                                .+.|+++|+||+|+....
T Consensus        80 ~~d~~l~v~~-~~~~---~~d~~~~~~l~~--------------------------------~~~~~ilV~nK~D~~~~~  123 (197)
T cd04104          80 EYDFFIIISS-TRFS---SNDVKLAKAIQC--------------------------------MGKKFYFVRTKVDRDLSN  123 (197)
T ss_pred             CcCEEEEEeC-CCCC---HHHHHHHHHHHH--------------------------------hCCCEEEEEecccchhhh
Confidence            4788888754 2222   233445544433                                157999999999985211


Q ss_pred             Ccc------hhhhhHHHHHHHHH----HcC---CeEEEEecc--CCCCHHHHHHHHHHHH
Q psy11649        192 EPN------KKRIAVQCLRYLAH----VNG---ASLLFHSSL--DPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e------~r~~i~~~lr~la~----~~G---a~l~etSAK--~~~nId~Lk~~I~~~l  236 (890)
                      ...      .+....+.+++.+.    ..|   -.+|.+|+.  .+.++..|.+.|.+.+
T Consensus       124 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l  183 (197)
T cd04104         124 EQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL  183 (197)
T ss_pred             hhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence            100      12222333333333    222   258999998  5789999999998887

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.16  E-value=2.8e-10  Score=126.40  Aligned_cols=83  Identities=18%  Similarity=0.178  Sum_probs=52.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCC--------CCCCCccceeEEEEEE---------------eccccceEEEEEEcCCC-
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKND--------TPKPTLALEYIYARKS---------------GKTVMKDICHLWELGSG-   93 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~~--------~~kptigvdY~f~~~~---------------g~~~~k~~l~IwDlpG~-   93 (890)
                      |++||.||||||||+|+|++...        ...|++|+.+......               ........+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998531        2245555443210000               00011237999999998 


Q ss_pred             ---cchhhHHhhh-hccccccccCcEEEEEEeCCC
Q psy11649         94 ---TSRLEVASLF-SSFSLTAQSGFTLVLMLDLSR  124 (890)
Q Consensus        94 ---~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSn  124 (890)
                         .++..+...+ ..  ++  ++|++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~--ir--~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDD--LR--DADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHH--HH--HCCEEEEEEeCCC
Confidence               4445554444 11  22  5999999999984

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.15  E-value=6.4e-10  Score=132.96  Aligned_cols=153  Identities=14%  Similarity=0.027  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchh
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL   97 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~   97 (890)
                      .+|+++|..++|||||+.+|+...+..                  ..++++.-.....   ...+.+++||||||+..|.
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v---~~~~~kinlIDTPGh~DF~   78 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAI---RYNGTKINIVDTPGHADFG   78 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEE---EECCEEEEEEECCCHHHHH
Confidence            479999999999999999998632110                  1122222111111   1223489999999998886


Q ss_pred             hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         98 EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        98 ~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ..+..+ +       .+|++++|+|.++...  .....|+..+.+                                .++
T Consensus        79 ~ev~~~l~-------~aD~alLVVDa~~G~~--~qT~~~l~~a~~--------------------------------~~i  117 (594)
T TIGR01394        79 GEVERVLG-------MVDGVLLLVDASEGPM--PQTRFVLKKALE--------------------------------LGL  117 (594)
T ss_pred             HHHHHHHH-------hCCEEEEEEeCCCCCc--HHHHHHHHHHHH--------------------------------CCC
Confidence            655555 3       4999999999987433  344455443322                                268


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHHH-------HcCCeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-------VNGASLLFHSSLDPG----------LVKRTRDILNHYA  236 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~-------~~Ga~l~etSAK~~~----------nId~Lk~~I~~~l  236 (890)
                      |++||+||+|+...    ....+..++..+..       ...++++++||++|.          |++.|++.|...+
T Consensus       118 p~IVviNKiD~~~a----~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       118 KPIVVINKIDRPSA----RPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             CEEEEEECCCCCCc----CHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            99999999998521    11112233333332       235689999999996          7888888887775

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.15  E-value=3.1e-10  Score=119.44  Aligned_cols=148  Identities=16%  Similarity=0.050  Sum_probs=86.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC------------------C---------------CCCCccceeEEEEEEeccccce
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND------------------T---------------PKPTLALEYIYARKSGKTVMKD   83 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~------------------~---------------~kptigvdY~f~~~~g~~~~k~   83 (890)
                      +|+++|..++|||||+.+|+...+                  +               ...+++++.......   ..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~---~~~~   77 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE---TEKY   77 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe---eCCe
Confidence            489999999999999999964211                  0               011122221111111   1234


Q ss_pred             EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCc---h--H-HHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS---L--W-TEAETFLAKFRAIFESNESVREKRGSFE  157 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S---~--~-~~L~~wlq~I~e~~~~ll~~~~~~~~l~  157 (890)
                      ++.+|||||+..+.......    ..  .+|++|+|+|.++...   +  . .....| ....                 
T Consensus        78 ~i~liDtpG~~~~~~~~~~~----~~--~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~-----------------  133 (219)
T cd01883          78 RFTILDAPGHRDFVPNMITG----AS--QADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR-----------------  133 (219)
T ss_pred             EEEEEECCChHHHHHHHHHH----hh--hCCEEEEEEECCCCccccccccccchHHHH-HHHH-----------------
Confidence            89999999986553322222    11  4899999999998521   0  0 111111 1110                 


Q ss_pred             cccccccccccccccCCC-CcEEEEeecccCCCC-CCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHH
Q psy11649        158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFEN-LEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVK  226 (890)
Q Consensus       158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d-~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId  226 (890)
                                     ..+ .|+++|+||+|+... .+.+....+...++.+...++     ++++++||++|.|++
T Consensus       134 ---------------~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         134 ---------------TLGVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             ---------------HcCCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                           112 589999999998621 111223334455555555554     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK10218 GTP-binding protein; Provisional

Probab=99.14  E-value=1.1e-09  Score=131.09  Aligned_cols=157  Identities=12%  Similarity=0.028  Sum_probs=99.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC----------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhh
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP----------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE   98 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~----------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~   98 (890)
                      -.+|+++|..++|||||+++|+...+..                ..+.|+.+....... ...+.++++|||||+..|..
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i-~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAI-KWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEE-ecCCEEEEEEECCCcchhHH
Confidence            4689999999999999999999732111                122333322111111 12334899999999998877


Q ss_pred             HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649         99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus        99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      .+..+    ++  .+|++|+|+|.++....  ....++..+.                                ..++|.
T Consensus        84 ~v~~~----l~--~aDg~ILVVDa~~G~~~--qt~~~l~~a~--------------------------------~~gip~  123 (607)
T PRK10218         84 EVERV----MS--MVDSVLLVVDAFDGPMP--QTRFVTKKAF--------------------------------AYGLKP  123 (607)
T ss_pred             HHHHH----HH--hCCEEEEEEecccCccH--HHHHHHHHHH--------------------------------HcCCCE
Confidence            66666    22  49999999999885432  2233332211                                136899


Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHHHHH-------HcCCeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAH-------VNGASLLFHSSLDPG----------LVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~-------~~Ga~l~etSAK~~~----------nId~Lk~~I~~~l  236 (890)
                      ++|+||+|+...    .......+++.+..       ...++++++||++|.          ++..|.+.|.+.+
T Consensus       124 IVviNKiD~~~a----~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        124 IVVINKVDRPGA----RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             EEEEECcCCCCC----chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            999999998521    11112223333321       234679999999998          4777777776665

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.13  E-value=8.2e-10  Score=120.82  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=108.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---e--ccccceEEEEEEcCCCcch--------hhHHhhhh
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---G--KTVMKDICHLWELGSGTSR--------LEVASLFS  104 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g--~~~~k~~l~IwDlpG~~~~--------~~Li~~~r  104 (890)
                      |-+||-||+|||||++.++.    .+|.++ +|.|++..   |  .......+-+=|+||...-        ...+... 
T Consensus       162 VGLVG~PNaGKSTlls~vS~----AkPKIa-dYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI-  235 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSA----AKPKIA-DYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHI-  235 (369)
T ss_pred             cccccCCCCcHHHHHHHHhh----cCCccc-CCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHH-
Confidence            56899999999999999998    677787 78887766   2  2222337899999997543        2222222 


Q ss_pred             ccccccccCcEEEEEEeCCCcCc--hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        105 SFSLTAQSGFTLVLMLDLSRLNS--LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       105 ~~~~~~~~ad~IIIV~DlSnp~S--~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                            ..+.+++.|+|++..+.  ..++......++..+-..+.                           ..|.+||+
T Consensus       236 ------ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~---------------------------~K~~ivv~  282 (369)
T COG0536         236 ------ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLA---------------------------EKPRIVVL  282 (369)
T ss_pred             ------HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhc---------------------------cCceEEEE
Confidence                  12779999999997654  22455555555555443322                           47999999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                      ||+|+..     ..+..+.....++...+.. .+++||.++.|++.|...+..++...
T Consensus       283 NKiD~~~-----~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         283 NKIDLPL-----DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             eccCCCc-----CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            9999642     2333344455566555544 33399999999999999998887554

>PRK12735 elongation factor Tu; Reviewed

Probab=99.09  E-value=1.2e-09  Score=125.06  Aligned_cols=159  Identities=12%  Similarity=0.072  Sum_probs=99.5

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC-----C-------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK-----N-------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~-----~-------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ....+|+++|..++|||||+++|++.     .             .....+++++..+...   ...+.++.++||||+.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~---~~~~~~i~~iDtPGh~   86 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY---ETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE---cCCCcEEEEEECCCHH
Confidence            34689999999999999999999862     0             0112344444222111   1123378999999986


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .|..-....    .  .++|++++|+|.++...-  .....+..+                                ...
T Consensus        87 ~f~~~~~~~----~--~~aD~~llVvda~~g~~~--qt~e~l~~~--------------------------------~~~  126 (396)
T PRK12735         87 DYVKNMITG----A--AQMDGAILVVSAADGPMP--QTREHILLA--------------------------------RQV  126 (396)
T ss_pred             HHHHHHHhh----h--ccCCEEEEEEECCCCCch--hHHHHHHHH--------------------------------HHc
Confidence            552222111    1  148999999999874331  222222211                                123


Q ss_pred             CCcEE-EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649        175 PVPLI-LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG----------LVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiI-VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~----------nId~Lk~~I~~~l  236 (890)
                      ++|.+ +|+||+|+..  +.+..+.+..+++.+...++     ++++++||+++.          ++..|.+.|...+
T Consensus       127 gi~~iivvvNK~Dl~~--~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~  202 (396)
T PRK12735        127 GVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI  202 (396)
T ss_pred             CCCeEEEEEEecCCcc--hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence            68866 5799999963  11223445556777777764     679999999984          5677777777654

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.09  E-value=1.5e-09  Score=124.01  Aligned_cols=84  Identities=20%  Similarity=0.254  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CC-----CCCccceeEEEE------------EEe---ccccceEEEEEEcCC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TP-----KPTLALEYIYAR------------KSG---KTVMKDICHLWELGS   92 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~-----kptigvdY~f~~------------~~g---~~~~k~~l~IwDlpG   92 (890)
                      ++|++||.||||||||+|+|++...   +|     .|++|+.+....            +.+   .......+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            5899999999999999999998532   33     344443321000            000   001113789999999


Q ss_pred             Cc----chhhHHhhh-hccccccccCcEEEEEEeCC
Q psy11649         93 GT----SRLEVASLF-SSFSLTAQSGFTLVLMLDLS  123 (890)
Q Consensus        93 ~~----~~~~Li~~~-r~~~~~~~~ad~IIIV~DlS  123 (890)
                      ..    ....+...+ +.  ++  ++|++++|+|++
T Consensus        82 l~~ga~~g~glg~~fL~~--ir--~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDD--LR--QADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHH--HH--HCCEEEEEEeCC
Confidence            53    334444444 21  22  599999999998

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.08  E-value=1.8e-09  Score=115.39  Aligned_cols=132  Identities=11%  Similarity=0.054  Sum_probs=83.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC--------C------------CCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDT--------P------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSR   96 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~--------~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~   96 (890)
                      +|+++|..|+|||||+++|+...+.        .            ..++++...+...   ...+.++++|||||+..|
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~---~~~~~~i~liDTPG~~~f   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF---QWEDTKVNLIDTPGHMDF   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE---EECCEEEEEEeCCCccch
Confidence            4899999999999999999863110        0            0011111111111   122348999999999887


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ......+    ++  .+|++|+|+|.++....  ....|.+.+.+                                .++
T Consensus        78 ~~~~~~~----l~--~aD~~IlVvd~~~g~~~--~~~~~~~~~~~--------------------------------~~~  117 (237)
T cd04168          78 IAEVERS----LS--VLDGAILVISAVEGVQA--QTRILWRLLRK--------------------------------LNI  117 (237)
T ss_pred             HHHHHHH----HH--HhCeEEEEEeCCCCCCH--HHHHHHHHHHH--------------------------------cCC
Confidence            6655555    12  48999999999986553  44444443321                                268


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS  218 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS  218 (890)
                      |+++|+||+|+..       ....+.+..+...++...+.+.
T Consensus       118 P~iivvNK~D~~~-------a~~~~~~~~i~~~~~~~~~~~~  152 (237)
T cd04168         118 PTIIFVNKIDRAG-------ADLEKVYQEIKEKLSSDIVPMQ  152 (237)
T ss_pred             CEEEEEECccccC-------CCHHHHHHHHHHHHCCCeEEEE
Confidence            9999999999852       1123455666667776655544

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1707|consensus

Probab=99.07  E-value=5e-10  Score=128.88  Aligned_cols=167  Identities=17%  Similarity=0.184  Sum_probs=105.7

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCccceeEEEEEE-eccccceEEEEEEcCCCcch-hhHHhhhhccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKNDT-PKPTLALEYIYARKS-GKTVMKDICHLWELGSGTSR-LEVASLFSSFS  107 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~-~kptigvdY~f~~~~-g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~  107 (890)
                      ....+.+|+|+|+.||||||||..|+..+.. .-|...-.+   ... .........+|.|++....- ..+....+   
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i---~IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir---   78 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI---LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIR---   78 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc---ccCCccCcCcCceEEEecccccchhHHHHHHHh---
Confidence            4567899999999999999999999985321 112211111   111 12222336899999865432 33344443   


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                          .+++|.+||++++++++..--..|+-.+++...                           ....+|||+||||+|.
T Consensus        79 ----kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~---------------------------~~~~~PVILvGNK~d~  127 (625)
T KOG1707|consen   79 ----KADVICLVYAVDDESTVDRISTKWLPLIRQLFG---------------------------DYHETPVILVGNKSDN  127 (625)
T ss_pred             ----hcCEEEEEEecCChHHhhhhhhhhhhhhhcccC---------------------------CCccCCEEEEeeccCC
Confidence                399999999999999983344579988876432                           1246899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..+........+...+.++..--  ..++|||++-.|+.+++-+-...+
T Consensus       128 ~~~~~~s~e~~~~pim~~f~EiE--tciecSA~~~~n~~e~fYyaqKaV  174 (625)
T KOG1707|consen  128 GDNENNSDEVNTLPIMIAFAEIE--TCIECSALTLANVSELFYYAQKAV  174 (625)
T ss_pred             ccccccchhHHHHHHHHHhHHHH--HHHhhhhhhhhhhHhhhhhhhhee
Confidence            75433200111222222222221  258999999999999866554443

>PRK12736 elongation factor Tu; Reviewed

Probab=99.07  E-value=2.4e-09  Score=122.57  Aligned_cols=158  Identities=13%  Similarity=0.077  Sum_probs=99.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      ..++|+++|..++|||||+++|++...                  ....+++++-.+...  . ..+..+.++|+||+..
T Consensus        11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~--~-~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY--E-TEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe--c-CCCcEEEEEECCCHHH
Confidence            468999999999999999999987210                  113344444222111  1 1233789999999865


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                      |......-    .  ..+|++++|+|.++...-  .....+..+                                ...+
T Consensus        88 f~~~~~~~----~--~~~d~~llVvd~~~g~~~--~t~~~~~~~--------------------------------~~~g  127 (394)
T PRK12736         88 YVKNMITG----A--AQMDGAILVVAATDGPMP--QTREHILLA--------------------------------RQVG  127 (394)
T ss_pred             HHHHHHHH----H--hhCCEEEEEEECCCCCch--hHHHHHHHH--------------------------------HHcC
Confidence            53222111    1  148999999999874331  222222211                                1236


Q ss_pred             Cc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC--------CHHHHHHHHHHHH
Q psy11649        176 VP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG--------LVKRTRDILNHYA  236 (890)
Q Consensus       176 IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~--------nId~Lk~~I~~~l  236 (890)
                      +| +|+|+||+|+..+  .+..+.+..+++.+....+     ++++++||+++.        +++.|.+.|...+
T Consensus       128 ~~~~IvviNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        128 VPYLVVFLNKVDLVDD--EELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CCEEEEEEEecCCcch--HHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            88 6789999998621  1112234456777766665     579999999983        5788888887765

>KOG1423|consensus

Probab=99.06  E-value=2.3e-09  Score=115.49  Aligned_cols=165  Identities=19%  Similarity=0.188  Sum_probs=97.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcch---------hh
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSR---------LE   98 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~---------~~   98 (890)
                      ..+...|+|||.||||||||.|++.+..-   ..+..++-.    +..| ...++.++-++||||...-         .+
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~----~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s  144 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRH----RILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS  144 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceee----eeeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence            34678999999999999999999999642   222222211    2223 2233448999999996421         11


Q ss_pred             HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649         99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus        99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      +...++..-   .+||++++|+|++++...+.  ...+..++++                               +.+|-
T Consensus       145 ~lq~~~~a~---q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-------------------------------s~ips  188 (379)
T KOG1423|consen  145 VLQNPRDAA---QNADCVVVVVDASATRTPLH--PRVLHMLEEY-------------------------------SKIPS  188 (379)
T ss_pred             hhhCHHHHH---hhCCEEEEEEeccCCcCccC--hHHHHHHHHH-------------------------------hcCCc
Confidence            222332211   24999999999997554311  1122222221                               24899


Q ss_pred             EEEeecccCCCC----------CCcchhhh-hHHHHHHHHHH---------cCC----eEEEEeccCCCCHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFEN----------LEPNKKRI-AVQCLRYLAHV---------NGA----SLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       179 IVVgNK~Dl~~d----------~d~e~r~~-i~~~lr~la~~---------~Ga----~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      ++|.||.|..+.          +...+... ..+...++...         .|.    .+|.+||+.|.|++++++||..
T Consensus       189 ~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLms  268 (379)
T KOG1423|consen  189 ILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMS  268 (379)
T ss_pred             eeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHh
Confidence            999999997531          00000000 01111111111         112    2899999999999999999987


Q ss_pred             HH
Q psy11649        235 YA  236 (890)
Q Consensus       235 ~l  236 (890)
                      .+
T Consensus       269 qa  270 (379)
T KOG1423|consen  269 QA  270 (379)
T ss_pred             cC
Confidence            76

>KOG1487|consensus

Probab=99.05  E-value=5.2e-10  Score=117.69  Aligned_cols=237  Identities=17%  Similarity=0.087  Sum_probs=151.9

Q ss_pred             cccccCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---ecc-ccceEEEEEEcCCCcch-----
Q psy11649         26 VHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKT-VMKDICHLWELGSGTSR-----   96 (890)
Q Consensus        26 ~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~-~~k~~l~IwDlpG~~~~-----   96 (890)
                      +++.+.+....+|-++|-|+||||||+..|++...    .++ .|.|++.+   |.. ....++++.|+||....     
T Consensus        50 ~gfDV~ktg~a~vg~vgFPSvGksTl~~~l~g~~s----~va-syefttl~~vpG~~~y~gaKiqlldlpgiiegakdgk  124 (358)
T KOG1487|consen   50 GGFDVAKTGDARVGFVGFPSVGKSTLLSKLTGTFS----EVA-AYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGK  124 (358)
T ss_pred             CCccceeecceeeeEEecCccchhhhhhhhcCCCC----ccc-cccceeEEEecceEeccccceeeecCcchhcccccCC
Confidence            35677788888999999999999999999998321    111 33333333   543 33349999999997532     


Q ss_pred             ---hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHH-----------------------------h
Q psy11649         97 ---LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIF-----------------------------E  144 (890)
Q Consensus        97 ---~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~-----------------------------~  144 (890)
                         ++++...|.       +..+++|+|+-.|-+--.-++.-++-+.-.+                             .
T Consensus       125 grg~qviavart-------cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~r  197 (358)
T KOG1487|consen  125 GRGKQVIAVART-------CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQR  197 (358)
T ss_pred             CCccEEEEEeec-------ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHH
Confidence               444444443       8899999999998775333333333222111                             1


Q ss_pred             hhhhhh---hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEecc
Q psy11649        145 SNESVR---EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL  220 (890)
Q Consensus       145 ~ll~~~---~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK  220 (890)
                      ..+.++   ++...++-.++.++.-|...-+...+|.+.+.||+|-..             ++++--.+.+ ..+.+||-
T Consensus       198 sil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsIS-------------iEELdii~~iphavpISA~  264 (358)
T KOG1487|consen  198 SILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSIS-------------IEELDIIYTIPHAVPISAH  264 (358)
T ss_pred             HHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceee-------------eeccceeeeccceeecccc
Confidence            111111   333334445566666665445556899999999999741             1111122222 36889999


Q ss_pred             CCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CCC-CCCccccccccccccchhHHHhhccc
Q psy11649        221 DPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGK-DASLESGGRGFNRSRGMKFEKKRGWI  298 (890)
Q Consensus       221 ~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~-~~~~~~~~~~~~~~~~~~f~~~~~w~  298 (890)
                      .+-|++.+.+-+...+           +..+.+..|-|+..  ....|. ++. -.++++++..+|++.-..|+++.+|-
T Consensus       265 ~~wn~d~lL~~mweyL-----------~LvriYtkPKgq~P--Dy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg  331 (358)
T KOG1487|consen  265 TGWNFDKLLEKMWEYL-----------KLVRIYTKPKGQPP--DYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWG  331 (358)
T ss_pred             cccchHHHHHHHhhcc-----------hheEEecCCCCCCC--CCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEec
Confidence            9999999988887665           33333444555443  234454 333 44889999999999999999999994


Q ss_pred             cc
Q psy11649        299 EG  300 (890)
Q Consensus       299 ~~  300 (890)
                      .+
T Consensus       332 ~s  333 (358)
T KOG1487|consen  332 SS  333 (358)
T ss_pred             cc
Confidence            43

>KOG0074|consensus

Probab=99.05  E-value=1.1e-09  Score=105.94  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=104.4

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+++|+++|-.|+|||||+.+|.+.+. ..-||-|..    .+.....+...++|||++|+...+.++..|    |.  
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn----~k~v~~~g~f~LnvwDiGGqr~IRpyWsNY----ye--   84 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN----TKKVEYDGTFHLNVWDIGGQRGIRPYWSNY----YE--   84 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc----eEEEeecCcEEEEEEecCCccccchhhhhh----hh--
Confidence            4589999999999999999999988543 445676633    333333333489999999999999999998    33  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +.|++|+|+|.++...| +       ++.+++.+++..                     .....+|+.+-.||.|+....
T Consensus        85 nvd~lIyVIDS~D~krf-e-------E~~~el~ELlee---------------------eKl~~vpvlIfankQdlltaa  135 (185)
T KOG0074|consen   85 NVDGLIYVIDSTDEKRF-E-------EISEELVELLEE---------------------EKLAEVPVLIFANKQDLLTAA  135 (185)
T ss_pred             ccceEEEEEeCCchHhH-H-------HHHHHHHHHhhh---------------------hhhhccceeehhhhhHHHhhc
Confidence            68999999998888777 3       333333222210                     122368999999999986421


Q ss_pred             CcchhhhhHHHHHHHHHHc--------CCeEEEEeccCCCCHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVN--------GASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~--------Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                      .          ....|...        ...+-+|||.+++++..-.+++.
T Consensus       136 ~----------~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~  175 (185)
T KOG0074|consen  136 K----------VEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQ  175 (185)
T ss_pred             c----------hHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhh
Confidence            1          12222222        23578899999888776655543

>cd04169 RF3 RF3 subfamily

Probab=99.05  E-value=3.8e-09  Score=114.83  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=80.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------CCCccceeE---------EEE-EEeccccceEEEEEEcCCC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP-----------KPTLALEYI---------YAR-KSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~-----------kptigvdY~---------f~~-~~g~~~~k~~l~IwDlpG~   93 (890)
                      .++|+|+|.+|+|||||+++|+...+..           ..+...||.         +.. .......+.++++|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            3579999999999999999998531100           011111211         000 0111122348999999999


Q ss_pred             cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      ..|.......    ++  .+|++|+|+|.++....  ....+.+...                                .
T Consensus        82 ~df~~~~~~~----l~--~aD~~IlVvda~~g~~~--~~~~i~~~~~--------------------------------~  121 (267)
T cd04169          82 EDFSEDTYRT----LT--AVDSAVMVIDAAKGVEP--QTRKLFEVCR--------------------------------L  121 (267)
T ss_pred             hHHHHHHHHH----HH--HCCEEEEEEECCCCccH--HHHHHHHHHH--------------------------------h
Confidence            8775543333    12  48999999999886442  3333333211                                1


Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS  218 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS  218 (890)
                      .++|+++++||+|+..      .. ..+.+..+...+|...+.+.
T Consensus       122 ~~~P~iivvNK~D~~~------a~-~~~~~~~l~~~l~~~~~~~~  159 (267)
T cd04169         122 RGIPIITFINKLDREG------RD-PLELLDEIEEELGIDCTPLT  159 (267)
T ss_pred             cCCCEEEEEECCccCC------CC-HHHHHHHHHHHHCCCceeEE
Confidence            2689999999999842      11 11224455556676655544

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.04  E-value=2e-09  Score=123.05  Aligned_cols=146  Identities=12%  Similarity=0.052  Sum_probs=90.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC-----C-------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK-----N-------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~-----~-------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ...++|+++|..++|||||+++|++.     .             .....+++++..+....   ....++.+|||||++
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~---~~~~~~~liDtpGh~   86 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE---TENRHYAHVDCPGHA   86 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc---CCCEEEEEEECCchH
Confidence            34789999999999999999999842     0             01124455543322211   123379999999997


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .|.......    .  .++|++++|+|+++...-  .....+..+                                ...
T Consensus        87 ~f~~~~~~~----~--~~~D~~ilVvda~~g~~~--qt~e~l~~~--------------------------------~~~  126 (394)
T TIGR00485        87 DYVKNMITG----A--AQMDGAILVVSATDGPMP--QTREHILLA--------------------------------RQV  126 (394)
T ss_pred             HHHHHHHHH----H--hhCCEEEEEEECCCCCcH--HHHHHHHHH--------------------------------HHc
Confidence            663222111    1  148999999999884332  112222211                                123


Q ss_pred             CCcEE-EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC
Q psy11649        175 PVPLI-LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG  223 (890)
Q Consensus       175 ~IPiI-VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~  223 (890)
                      ++|.+ +|+||+|+...  .+..+.+..+++.++..++     ++++++||+++.
T Consensus       127 gi~~iIvvvNK~Dl~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       127 GVPYIVVFLNKCDMVDD--EELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCCEEEEEEEecccCCH--HHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            67865 68999998631  1112334456777887775     689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.04  E-value=2e-09  Score=114.48  Aligned_cols=161  Identities=15%  Similarity=0.155  Sum_probs=94.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTA  110 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~  110 (890)
                      ||+++|.++|||||+.+-+..+-.     .-.+|+.++..  .  ........++|||+||+..+....... +...++ 
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~--~--v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~-   75 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKS--H--VRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFS-   75 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEE--E--EECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHC-
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEE--E--EecCCCcEEEEEEcCCccccccccccccHHHHHh-
Confidence            799999999999999999887521     22345554421  1  112223379999999998764442111 222233 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++.++|+|+|+.+.+ +.+.+..+.+.+......                           +.++.+-+...|+|+.. 
T Consensus        76 -~v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~---------------------------sp~~~v~vfiHK~D~l~-  125 (232)
T PF04670_consen   76 -NVGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQY---------------------------SPNIKVFVFIHKMDLLS-  125 (232)
T ss_dssp             -TESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHH---------------------------STT-EEEEEEE-CCCS--
T ss_pred             -ccCEEEEEEEccccc-HHHHHHHHHHHHHHHHHh---------------------------CCCCeEEEEEeecccCC-
Confidence             589999999998544 335666655554443321                           23688999999999964 


Q ss_pred             CCcchhh----hhHHHHHHHHHHcC---CeEEEEeccCCCCHHHHHHHHHH
Q psy11649        191 LEPNKKR----IAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       191 ~d~e~r~----~i~~~lr~la~~~G---a~l~etSAK~~~nId~Lk~~I~~  234 (890)
                        ++.|.    .+.+.+...+...+   +.++.||.-+..-.+..-..+..
T Consensus       126 --~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sly~A~S~Ivq~  174 (232)
T PF04670_consen  126 --EDEREEIFRDIQQRIRDELEDLGIEDITFFLTSIWDESLYEAWSKIVQK  174 (232)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHHHHhhhccccceEEEeccCcCcHHHHHHHHHHHH
Confidence              23333    34455555666666   78999999996544444443333

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0072|consensus

Probab=99.02  E-value=8.1e-10  Score=107.11  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=107.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+.+++++|--|+|||+++.++.-. ....+||+|..  ..+...++   -+++|||++|+.+.+.++..|    |.  +
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn--ve~v~yKN---Lk~~vwdLggqtSirPyWRcY----y~--d   85 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN--VETVPYKN---LKFQVWDLGGQTSIRPYWRCY----YA--D   85 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC--cccccccc---ccceeeEccCcccccHHHHHH----hc--c
Confidence            5789999999999999999998754 44667888833  21222222   279999999999999999998    33  6


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      .+++|+|+|.+|..++-.+=..++..+.+.-                             .-+.-++|++||.|...   
T Consensus        86 t~avIyVVDssd~dris~a~~el~~mL~E~e-----------------------------Lq~a~llv~anKqD~~~---  133 (182)
T KOG0072|consen   86 TDAVIYVVDSSDRDRISIAGVELYSMLQEEE-----------------------------LQHAKLLVFANKQDYSG---  133 (182)
T ss_pred             cceEEEEEeccchhhhhhhHHHHHHHhccHh-----------------------------hcCceEEEEeccccchh---
Confidence            8999999999998886111122222222110                             01356899999999742   


Q ss_pred             cchhhhhHHH-----HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQC-----LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~-----lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         +.-..+.     +.++..+ -..+|.+||.+|.|++...+++.+.+
T Consensus       134 ---~~t~~E~~~~L~l~~Lk~r-~~~Iv~tSA~kg~Gld~~~DWL~~~l  178 (182)
T KOG0072|consen  134 ---ALTRSEVLKMLGLQKLKDR-IWQIVKTSAVKGEGLDPAMDWLQRPL  178 (182)
T ss_pred             ---hhhHHHHHHHhChHHHhhh-eeEEEeeccccccCCcHHHHHHHHHH
Confidence               2111111     1222222 25799999999999999999998776

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.02  E-value=1.4e-09  Score=117.85  Aligned_cols=149  Identities=13%  Similarity=0.056  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCC------CCC--------------CccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDT------PKP--------------TLALEYIYARKSGKTVMKDICHLWELGSGTSR   96 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~------~kp--------------tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~   96 (890)
                      +|+++|.+|||||||+++|+...+.      ...              +.++......   ....+..+++|||||...+
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~---~~~~~~~i~liDtPG~~~f   77 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAP---LEWKGHKINLIDTPGYADF   77 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEE---EEECCEEEEEEECcCHHHH
Confidence            4899999999999999999753211      000              1111111101   1112347999999998776


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ......+    ++  .+|++++|+|.++.... .....|. .+.                                ..++
T Consensus        78 ~~~~~~~----l~--~aD~~i~Vvd~~~g~~~-~~~~~~~-~~~--------------------------------~~~~  117 (268)
T cd04170          78 VGETRAA----LR--AADAALVVVSAQSGVEV-GTEKLWE-FAD--------------------------------EAGI  117 (268)
T ss_pred             HHHHHHH----HH--HCCEEEEEEeCCCCCCH-HHHHHHH-HHH--------------------------------HcCC
Confidence            5444444    11  38999999999987664 2222222 111                                1368


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEE--eccCCCCHHHHHHHHHHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFH--SSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~et--SAK~~~nId~Lk~~I~~~  235 (890)
                      |+++|+||+|+..       ......+..+...+|..++.+  ..+++.++..+.+.+...
T Consensus       118 p~iivvNK~D~~~-------~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~  171 (268)
T cd04170         118 PRIIFINKMDRER-------ADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEK  171 (268)
T ss_pred             CEEEEEECCccCC-------CCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCE
Confidence            9999999999852       122344556666667654444  467888877765555443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.02  E-value=4e-09  Score=111.67  Aligned_cols=86  Identities=10%  Similarity=-0.006  Sum_probs=56.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEec-------cccceEEEEEEcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGK-------TVMKDICHLWELG   91 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~-------~~~k~~l~IwDlp   91 (890)
                      +|+++|..++|||||+.+|+...+..                  ..++++.-........       ...+..+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            69999999999999999998632110                  0111111110001111       0113489999999


Q ss_pred             CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCch
Q psy11649         92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSL  128 (890)
Q Consensus        92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~  128 (890)
                      |+..|......+    ++  .+|++|+|+|+++..+.
T Consensus        82 G~~~f~~~~~~~----l~--~aD~~ilVvD~~~g~~~  112 (222)
T cd01885          82 GHVDFSSEVTAA----LR--LCDGALVVVDAVEGVCV  112 (222)
T ss_pred             CccccHHHHHHH----HH--hcCeeEEEEECCCCCCH
Confidence            999887766665    12  49999999999987664

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK13351 elongation factor G; Reviewed

Probab=98.97  E-value=7.5e-09  Score=126.39  Aligned_cols=112  Identities=14%  Similarity=0.037  Sum_probs=74.8

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC------C----------------CCCCccceeEEEEEEeccccceEEEEEEc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND------T----------------PKPTLALEYIYARKSGKTVMKDICHLWEL   90 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~------~----------------~kptigvdY~f~~~~g~~~~k~~l~IwDl   90 (890)
                      ....+|+|+|..++|||||+++|+...+      .                +..|+...  +.....   .+.++++|||
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~--~~~~~~---~~~~i~liDt   80 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA--ATSCDW---DNHRINLIDT   80 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc--eEEEEE---CCEEEEEEEC
Confidence            3467999999999999999999985211      0                11122211  111111   2348999999


Q ss_pred             CCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccc
Q psy11649         91 GSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGL  170 (890)
Q Consensus        91 pG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~l  170 (890)
                      ||+..|...+..+    ++  .+|++|+|+|.++..+. .....|.. +.                              
T Consensus        81 PG~~df~~~~~~~----l~--~aD~~ilVvd~~~~~~~-~~~~~~~~-~~------------------------------  122 (687)
T PRK13351         81 PGHIDFTGEVERS----LR--VLDGAVVVFDAVTGVQP-QTETVWRQ-AD------------------------------  122 (687)
T ss_pred             CCcHHHHHHHHHH----HH--hCCEEEEEEeCCCCCCH-HHHHHHHH-HH------------------------------
Confidence            9998876665555    12  48999999999997775 33333321 11                              


Q ss_pred             ccCCCCcEEEEeecccCCC
Q psy11649        171 IRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       171 i~~l~IPiIVVgNK~Dl~~  189 (890)
                        ..++|+++|+||+|+..
T Consensus       123 --~~~~p~iiviNK~D~~~  139 (687)
T PRK13351        123 --RYGIPRLIFINKMDRVG  139 (687)
T ss_pred             --hcCCCEEEEEECCCCCC
Confidence              12689999999999863

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.96  E-value=4.5e-09  Score=107.69  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=65.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCcc-ceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhh-hccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLA-LEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLF-SSFSLTAQ  111 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kptig-vdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~-r~~~~~~~  111 (890)
                      .-.|+|+|++|+|||+|+.+|+.+..  .+|++ ++-.. ...........+.+.|+||+.+++. +.... ..     .
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~--~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~-----~   74 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKT--VPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYL-----S   74 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS-----B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHH-----G
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCc--CCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhch-----h
Confidence            34699999999999999999998622  23322 11100 0001112223799999999998865 33331 11     1


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                      ++.+||+|+|.+...   .++..--+.+...+....                       ....++|++|+|||.|++.
T Consensus        75 ~~k~IIfvvDSs~~~---~~~~~~Ae~Ly~iL~~~~-----------------------~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   75 NAKGIIFVVDSSTDQ---KELRDVAEYLYDILSDTE-----------------------VQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             GEEEEEEEEETTTHH---HHHHHHHHHHHHHHHHHH-----------------------CCTT--EEEEEEE-TTSTT
T ss_pred             hCCEEEEEEeCccch---hhHHHHHHHHHHHHHhhh-----------------------hccCCCCEEEEEeCccccc
Confidence            377999999987522   122222222222222100                       1234799999999999975

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.95  E-value=6.2e-09  Score=119.58  Aligned_cols=148  Identities=18%  Similarity=0.107  Sum_probs=88.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------------------------CCCccceeEEEEEEeccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTP-----------------------------------KPTLALEYIYARKSGKTV   80 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~-----------------------------------kptigvdY~f~~~~g~~~   80 (890)
                      .+|+++|..++|||||+.+|+...+..                                   .-+++++..+....   .
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---~   77 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---T   77 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc---c
Confidence            479999999999999999997532110                                   01112222111111   1


Q ss_pred             cceEEEEEEcCCCcchhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649         81 MKDICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF  159 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~  159 (890)
                      .+.++.++||||++.|.. +.....       .+|++|+|+|.+....- ...+.|. .+                    
T Consensus        78 ~~~~~~liDtPGh~~f~~~~~~~~~-------~aD~allVVda~~G~~~-qt~~~~~-~~--------------------  128 (406)
T TIGR02034        78 DKRKFIVADTPGHEQYTRNMATGAS-------TADLAVLLVDARKGVLE-QTRRHSY-IA--------------------  128 (406)
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHHHh-------hCCEEEEEEECCCCCcc-ccHHHHH-HH--------------------
Confidence            234799999999877633 332222       49999999999875431 1111111 11                    


Q ss_pred             cccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC---CeEEEEeccCCCCHHHH
Q psy11649        160 RTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       160 ~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G---a~l~etSAK~~~nId~L  228 (890)
                                  ..+++ ++++|+||+|+.. .+.+....+...+..+...++   ++++++||++|.|++++
T Consensus       129 ------------~~~~~~~iivviNK~D~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       129 ------------SLLGIRHVVLAVNKMDLVD-YDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             ------------HHcCCCcEEEEEEeccccc-chHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence                        11134 5889999999863 111122334455555555554   46999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.94  E-value=4.4e-09  Score=122.12  Aligned_cols=157  Identities=14%  Similarity=0.067  Sum_probs=98.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~   80 (890)
                      ...+|+++|..++|||||+-+|+...+                                 ....+++++..+...   ..
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~---~~   82 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF---ET   82 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEe---cC
Confidence            367899999999999999998874211                                 001122232221111   11


Q ss_pred             cceEEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF  159 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~  159 (890)
                      .+..+++.|+||+..|....... +       .+|++|+|+|.++. .| +....|....+++..-              
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~-------~aD~aIlVVda~~G-~~-e~g~~~~~qT~eh~~~--------------  139 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTS-------QADCAVLIIDSTTG-GF-EAGISKDGQTREHALL--------------  139 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhh-------hccEEEEEEEcccC-ce-ecccCCCchHHHHHHH--------------
Confidence            23489999999998875544444 3       49999999999872 22 2222222233333221              


Q ss_pred             cccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649        160 RTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR  227 (890)
Q Consensus       160 ~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~  227 (890)
                                 ...+++| +||++||+|+.. +.+.+....+.++++.++.+.|     ++++++||++|.|+.+
T Consensus       140 -----------~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        140 -----------AFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             -----------HHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                       2234785 688999999751 1222233445677888888877     5699999999999854

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.94  E-value=9e-09  Score=124.51  Aligned_cols=149  Identities=16%  Similarity=0.092  Sum_probs=89.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCC-------------CC----------------------CccceeEEEEEEec
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP-------------KP----------------------TLALEYIYARKSGK   78 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~-------------kp----------------------tigvdY~f~~~~g~   78 (890)
                      ..++|+++|.+++|||||+++|+......             ..                      +++++..+...   
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~---   99 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF---   99 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE---
Confidence            35789999999999999999999732111             01                      11112111111   


Q ss_pred             cccceEEEEEEcCCCcchhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649         79 TVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE  157 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~  157 (890)
                      ...+.++.++||||.+.|.. +.....       .+|++++|+|.+....-  ........+.                 
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~-------~aD~~llVvda~~g~~~--~t~e~~~~~~-----------------  153 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGAS-------TADLAIILVDARKGVLT--QTRRHSFIAS-----------------  153 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHH-------hCCEEEEEEECCCCccc--cCHHHHHHHH-----------------
Confidence            11233789999999876532 222111       49999999999765321  1111111111                 


Q ss_pred             cccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHH
Q psy11649        158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKR  227 (890)
Q Consensus       158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~  227 (890)
                                     .++ .|++||+||+|+.. .+.+....+..+++.+...++.   +++++||++|.|+++
T Consensus       154 ---------------~~~~~~iivvvNK~D~~~-~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        154 ---------------LLGIRHVVLAVNKMDLVD-YDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ---------------HhCCCeEEEEEEeccccc-chhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                           113 46889999999863 1112233344556666666654   599999999999985

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.93  E-value=9.9e-09  Score=120.05  Aligned_cols=151  Identities=15%  Similarity=0.064  Sum_probs=91.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------------------------CCCccceeEEEEEEec
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP-----------------------------------KPTLALEYIYARKSGK   78 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~-----------------------------------kptigvdY~f~~~~g~   78 (890)
                      ...+|+++|..++|||||+.+|+......                                   ..+++++..+....  
T Consensus        26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~--  103 (474)
T PRK05124         26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS--  103 (474)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec--
Confidence            46899999999999999999998632110                                   01122332221111  


Q ss_pred             cccceEEEEEEcCCCcchhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649         79 TVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE  157 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~  157 (890)
                       ..+.++.++||||+..|.. +....     .  .+|++++|+|.+....- ...+.|. .+                  
T Consensus       104 -~~~~~i~~iDTPGh~~f~~~~~~~l-----~--~aD~allVVDa~~G~~~-qt~~~~~-l~------------------  155 (474)
T PRK05124        104 -TEKRKFIIADTPGHEQYTRNMATGA-----S--TCDLAILLIDARKGVLD-QTRRHSF-IA------------------  155 (474)
T ss_pred             -cCCcEEEEEECCCcHHHHHHHHHHH-----h--hCCEEEEEEECCCCccc-cchHHHH-HH------------------
Confidence             1233799999999876532 22211     1  49999999999864321 0111111 00                  


Q ss_pred             cccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC----CeEEEEeccCCCCHHHHH
Q psy11649        158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG----ASLLFHSSLDPGLVKRTR  229 (890)
Q Consensus       158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G----a~l~etSAK~~~nId~Lk  229 (890)
                                    ..++ .|++||+||+|+.. .+.+....+..+++.+....+    ++++++||++|.|++++.
T Consensus       156 --------------~~lg~~~iIvvvNKiD~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        156 --------------TLLGIKHLVVAVNKMDLVD-YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             --------------HHhCCCceEEEEEeecccc-chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence                          0112 36899999999862 122223334445555555544    779999999999998764

>CHL00071 tufA elongation factor Tu

Probab=98.93  E-value=1.3e-08  Score=117.13  Aligned_cols=147  Identities=10%  Similarity=0.007  Sum_probs=89.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      ..++|+++|.+++|||||+++|++...                  ....+++++-.+...   .....++.+.||||...
T Consensus        11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~---~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071         11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY---ETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE---ccCCeEEEEEECCChHH
Confidence            468999999999999999999997311                  111333333211111   11233788999999765


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                      |.......    +.  .+|++++|+|.+....  ......+..+                                ..++
T Consensus        88 ~~~~~~~~----~~--~~D~~ilVvda~~g~~--~qt~~~~~~~--------------------------------~~~g  127 (409)
T CHL00071         88 YVKNMITG----AA--QMDGAILVVSAADGPM--PQTKEHILLA--------------------------------KQVG  127 (409)
T ss_pred             HHHHHHHH----HH--hCCEEEEEEECCCCCc--HHHHHHHHHH--------------------------------HHcC
Confidence            52222111    11  4999999999987433  1222222211                                1236


Q ss_pred             Cc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCH
Q psy11649        176 VP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLV  225 (890)
Q Consensus       176 IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nI  225 (890)
                      +| +|+|.||+|+...  .+..+.+..+++.+....+     ++++++||.+|.|+
T Consensus       128 ~~~iIvvvNK~D~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        128 VPNIVVFLNKEDQVDD--EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCEEEEEEEccCCCCH--HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccc
Confidence            89 7789999999631  1122334456666666654     67999999998743

>cd01850 CDC_Septin CDC/Septin

Probab=98.89  E-value=2.3e-08  Score=109.24  Aligned_cols=149  Identities=10%  Similarity=0.089  Sum_probs=87.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC------------CCCCccceeEEEEEEeccccceEEEEEEcCCCcch-----
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDT------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-----   96 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-----   96 (890)
                      ..++|+|+|.+|+|||||+|+|++....            ..+|++++....... ......++.||||||....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~-~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIE-ENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEE-ECCEEEEEEEEecCCccccccchh
Confidence            3689999999999999999999985321            234444432111111 1112237999999994221     


Q ss_pred             --hhHHh-------h-----h---hccccccccCcEEEEEEeCCCcCchHHHHHHH-HHHHHHHHhhhhhhhhhcccccc
Q psy11649         97 --LEVAS-------L-----F---SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETF-LAKFRAIFESNESVREKRGSFEH  158 (890)
Q Consensus        97 --~~Li~-------~-----~---r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~w-lq~I~e~~~~ll~~~~~~~~l~~  158 (890)
                        ..+..       .     .   ++..+.-..+++++++++.+.. .+    ..| ++.++...               
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l----~~~D~~~lk~l~---------------  141 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GL----KPLDIEFMKRLS---------------  141 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CC----CHHHHHHHHHHh---------------
Confidence              11111       0     0   1111211126777777776641 11    111 12222211               


Q ss_pred             ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC
Q psy11649        159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  221 (890)
Q Consensus       159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~  221 (890)
                                    . ++|+++|+||+|++.   .++.....+.+++.+..+++.++......
T Consensus       142 --------------~-~v~vi~VinK~D~l~---~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         142 --------------K-RVNIIPVIAKADTLT---PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             --------------c-cCCEEEEEECCCcCC---HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence                          1 489999999999963   33455667778888899999988776533

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.89  E-value=2.9e-08  Score=117.40  Aligned_cols=114  Identities=16%  Similarity=0.103  Sum_probs=70.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------CC-----CCCc-----------cceeEEEEEEeccccceEEEEEEcC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------TP-----KPTL-----------ALEYIYARKSGKTVMKDICHLWELG   91 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~~-----kpti-----------gvdY~f~~~~g~~~~k~~l~IwDlp   91 (890)
                      ...+|+|+|.+++|||||+++|+...+      ..     ..+.           |+.+.... ......+.++++||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~-~~~~~~~~~inliDTP   87 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSV-MQFPYRDCLINLLDTP   87 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeee-EEEEECCEEEEEEECC
Confidence            356899999999999999999974110      00     0001           11111100 1111223489999999


Q ss_pred             CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649         92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus        92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                      |+..|......+    ++  .+|++|+|+|.++....  ....+++..+                               
T Consensus        88 G~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~~--~t~~l~~~~~-------------------------------  128 (526)
T PRK00741         88 GHEDFSEDTYRT----LT--AVDSALMVIDAAKGVEP--QTRKLMEVCR-------------------------------  128 (526)
T ss_pred             CchhhHHHHHHH----HH--HCCEEEEEEecCCCCCH--HHHHHHHHHH-------------------------------
Confidence            998776544434    12  49999999999885432  3333333221                               


Q ss_pred             cCCCCcEEEEeecccCC
Q psy11649        172 RTFPVPLILIGGKYDLF  188 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~  188 (890)
                       ..++|+++++||+|+.
T Consensus       129 -~~~iPiiv~iNK~D~~  144 (526)
T PRK00741        129 -LRDTPIFTFINKLDRD  144 (526)
T ss_pred             -hcCCCEEEEEECCccc
Confidence             1268999999999975

>KOG0090|consensus

Probab=98.89  E-value=1.3e-08  Score=105.06  Aligned_cols=163  Identities=14%  Similarity=0.199  Sum_probs=94.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCcc-ceeEEEEEEeccc-cceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLA-LEYIYARKSGKTV-MKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptig-vdY~f~~~~g~~~-~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      ..|+++|..+||||+|+.+|..+  .+.+|++ ++    ...+... +...+++.|+||+++++.-...+=.+++.   +
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~g--s~~~TvtSie----pn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~---a  109 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITG--SHRGTVTSIE----PNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYS---A  109 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcC--CccCeeeeec----cceeeEeecCcceEEEeCCCcHHHHHHHHHHcccccc---c
Confidence            35999999999999999999886  2223332 00    0001001 11148999999999987666555122245   8


Q ss_pred             cEEEEEEeCCC-cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        114 FTLVLMLDLSR-LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       114 d~IIIV~DlSn-p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      -+||+|+|..- +... .....++..+--...                          ...-++|++|+|||.|++..-.
T Consensus       110 kaiVFVVDSa~f~k~v-rdvaefLydil~~~~--------------------------~~~~~~~vLIaCNKqDl~tAkt  162 (238)
T KOG0090|consen  110 KAIVFVVDSATFLKNV-RDVAEFLYDILLDSR--------------------------VKKNKPPVLIACNKQDLFTAKT  162 (238)
T ss_pred             eeEEEEEeccccchhh-HHHHHHHHHHHHhhc--------------------------cccCCCCEEEEecchhhhhcCc
Confidence            89999999765 3332 222222222211110                          1123689999999999975322


Q ss_pred             cch-hhhhHHHHHHHHH--------------------------------HcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNK-KRIAVQCLRYLAH--------------------------------VNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~-r~~i~~~lr~la~--------------------------------~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      .+. |+....++..+-.                                ...+.+.++|++++ +++++.++|...
T Consensus       163 ~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  163 AEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence            111 1111112211111                                12345888888888 889988888654

>PLN03126 Elongation factor Tu; Provisional

Probab=98.89  E-value=1.8e-08  Score=117.73  Aligned_cols=147  Identities=10%  Similarity=0.024  Sum_probs=92.2

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC------------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN------------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~------------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ....++|+++|..++|||||+++|++..                  ++...+++++-.+....   ..+.++.++|+||+
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~---~~~~~i~liDtPGh  154 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE---TENRHYAHVDCPGH  154 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe---cCCcEEEEEECCCH
Confidence            3446899999999999999999999521                  11123333332221111   12337899999998


Q ss_pred             cchhhHH-hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649         94 TSRLEVA-SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR  172 (890)
Q Consensus        94 ~~~~~Li-~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~  172 (890)
                      ..|..-. ...+       .+|++++|+|.++...-  ....++..+                                .
T Consensus       155 ~~f~~~~~~g~~-------~aD~ailVVda~~G~~~--qt~e~~~~~--------------------------------~  193 (478)
T PLN03126        155 ADYVKNMITGAA-------QMDGAILVVSGADGPMP--QTKEHILLA--------------------------------K  193 (478)
T ss_pred             HHHHHHHHHHHh-------hCCEEEEEEECCCCCcH--HHHHHHHHH--------------------------------H
Confidence            7763322 2222       38999999999875442  222222211                                1


Q ss_pred             CCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-----CCeEEEEeccCCCC
Q psy11649        173 TFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-----GASLLFHSSLDPGL  224 (890)
Q Consensus       173 ~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-----Ga~l~etSAK~~~n  224 (890)
                      ..++| ++++.||+|+...  .+..+.+..+++.+....     .++++++|+.++.|
T Consensus       194 ~~gi~~iIvvvNK~Dl~~~--~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        194 QVGVPNMVVFLNKQDQVDD--EELLELVELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HcCCCeEEEEEecccccCH--HHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence            23788 7889999998631  112344455677776664     46799999988753

>cd04121 Rab40 Rab40 subfamily

Probab=98.89  E-value=4.3e-09  Score=108.58  Aligned_cols=112  Identities=16%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|++.|+..+..+...  -..    ..-.+|||+|++.|+++ +.++.|+..++.+..                    
T Consensus        57 l~iwDt~G~~~~~~l~~~--~~~----~ad~illVfD~t~~~Sf-~~~~~w~~~i~~~~~--------------------  109 (189)
T cd04121          57 LQLWDTSGQGRFCTIFRS--YSR----GAQGIILVYDITNRWSF-DGIDRWIKEIDEHAP--------------------  109 (189)
T ss_pred             EEEEeCCCcHHHHHHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            489999999777766544  111    23489999999999999 889999988854210                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       ++|+||||||+|+...     ...-...++.+|..+|...|.||+|+
T Consensus       110 ---------------------------------~~piilVGNK~DL~~~-----~~v~~~~~~~~a~~~~~~~~e~SAk~  151 (189)
T cd04121         110 ---------------------------------GVPKILVGNRLHLAFK-----RQVATEQAQAYAERNGMTFFEVSPLC  151 (189)
T ss_pred             ---------------------------------CCCEEEEEECccchhc-----cCCCHHHHHHHHHHcCCEEEEecCCC
Confidence                                             3799999999999632     12224458888999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++.+|.-.++.
T Consensus       152 g~~V~~~F~~l~~~i~~  168 (189)
T cd04121         152 NFNITESFTELARIVLM  168 (189)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.88  E-value=2.7e-08  Score=108.44  Aligned_cols=109  Identities=15%  Similarity=0.031  Sum_probs=68.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--------------------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND--------------------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR   96 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~--------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~   96 (890)
                      +|+++|.+|+|||||+++|+...+                    ....+++++.......   ..+.++++|||||...+
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~---~~~~~i~liDTPG~~df   77 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF---WKDHRINIIDTPGHVDF   77 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE---ECCEEEEEEECCCcHHH
Confidence            489999999999999999974211                    0112222221111111   12348999999998766


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ...+...    ++  .+|++|+|+|.++...-  ......+.+.                                ..++
T Consensus        78 ~~~~~~~----l~--~aD~ailVVDa~~g~~~--~t~~~~~~~~--------------------------------~~~~  117 (270)
T cd01886          78 TIEVERS----LR--VLDGAVAVFDAVAGVEP--QTETVWRQAD--------------------------------RYNV  117 (270)
T ss_pred             HHHHHHH----HH--HcCEEEEEEECCCCCCH--HHHHHHHHHH--------------------------------HcCC
Confidence            5444443    12  48999999999885442  2222222111                                1268


Q ss_pred             cEEEEeecccCC
Q psy11649        177 PLILIGGKYDLF  188 (890)
Q Consensus       177 PiIVVgNK~Dl~  188 (890)
                      |+++++||+|+.
T Consensus       118 p~ivviNK~D~~  129 (270)
T cd01886         118 PRIAFVNKMDRT  129 (270)
T ss_pred             CEEEEEECCCCC
Confidence            999999999985

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.87  E-value=9.2e-08  Score=98.71  Aligned_cols=166  Identities=14%  Similarity=0.098  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCC-C---CCCccceeEEEEEEeccccceEEEEEEcCCCcchh----h----HHhhh
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDT-P---KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----E----VASLF  103 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~-~---kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----~----Li~~~  103 (890)
                      .+|+|+|.+|||||||+|.+++.... .   .++++.+....+...   .+.++.++||||.....    .    +...+
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~---~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~   77 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW---DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCL   77 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE---CCeEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence            37999999999999999999985321 1   122232211111111   23479999999975431    1    11111


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                      .. ..  .+++++++|+|+.+ .+  ..-...++.+++...+                           ....++++|.|
T Consensus        78 ~~-~~--~g~~~illVi~~~~-~t--~~d~~~l~~l~~~fg~---------------------------~~~~~~ivv~T  124 (196)
T cd01852          78 SL-SA--PGPHAFLLVVPLGR-FT--EEEEQAVETLQELFGE---------------------------KVLDHTIVLFT  124 (196)
T ss_pred             Hh-cC--CCCEEEEEEEECCC-cC--HHHHHHHHHHHHHhCh---------------------------HhHhcEEEEEE
Confidence            11 11  25899999999987 33  2333334444443221                           11247899999


Q ss_pred             cccCCCCCCcch-hhhhHHHHHHHHHHcCCeEEEEec-----cCCCCHHHHHHHHHHHHh
Q psy11649        184 KYDLFENLEPNK-KRIAVQCLRYLAHVNGASLLFHSS-----LDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       184 K~Dl~~d~d~e~-r~~i~~~lr~la~~~Ga~l~etSA-----K~~~nId~Lk~~I~~~lf  237 (890)
                      +.|.....+-+. .......++.+....|..++..+.     ..+.++++|.+.|...+-
T Consensus       125 ~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~  184 (196)
T cd01852         125 RGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVK  184 (196)
T ss_pred             CccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence            999764211111 111224566677776766655553     456788888888887764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK00049 elongation factor Tu; Reviewed

Probab=98.87  E-value=4.1e-08  Score=112.54  Aligned_cols=158  Identities=13%  Similarity=0.072  Sum_probs=96.4

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC------------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN------------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~------------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ...++|+++|..++|||||+++|++..                  ++...+++++..+....   ..+.++.+.||||..
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~---~~~~~i~~iDtPG~~   86 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE---TEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc---CCCeEEEEEECCCHH
Confidence            346899999999999999999998721                  01134444443222211   123378999999986


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .|..-....    .  ..+|++++|+|.+....-  .....+..+                                ...
T Consensus        87 ~f~~~~~~~----~--~~aD~~llVVDa~~g~~~--qt~~~~~~~--------------------------------~~~  126 (396)
T PRK00049         87 DYVKNMITG----A--AQMDGAILVVSAADGPMP--QTREHILLA--------------------------------RQV  126 (396)
T ss_pred             HHHHHHHhh----h--ccCCEEEEEEECCCCCch--HHHHHHHHH--------------------------------HHc
Confidence            542222211    1  149999999999875332  222222221                                123


Q ss_pred             CCcEE-EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCC----------CHHHHHHHHHHH
Q psy11649        175 PVPLI-LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPG----------LVKRTRDILNHY  235 (890)
Q Consensus       175 ~IPiI-VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~----------nId~Lk~~I~~~  235 (890)
                      ++|.+ ++.||+|+..  +.+..+.+..+++.+....|     ++++++||+++.          ++..|.++|...
T Consensus       127 g~p~iiVvvNK~D~~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        127 GVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             CCCEEEEEEeecCCcc--hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            68976 5899999863  11112234445666655543     679999999875          356666666654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.87  E-value=3.1e-08  Score=93.29  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=55.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh-hcc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF-SSF  106 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~-r~~  106 (890)
                      +|+|+|.+|||||||+|+|++..   ....+..+....+.....   ....+.++||||...-.      .....+ +. 
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~---~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY---NNKKFILVDTPGINDGESQDNDGKEIRKFLEQ-   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE---TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH-
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee---ceeeEEEEeCCCCcccchhhHHHHHHHHHHHH-
Confidence            68999999999999999999842   122233333322211111   23367899999975321      122223 22 


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHH
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKF  139 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I  139 (890)
                      ..   .+|++++|+|.+++..  +.....++.+
T Consensus        77 ~~---~~d~ii~vv~~~~~~~--~~~~~~~~~l  104 (116)
T PF01926_consen   77 IS---KSDLIIYVVDASNPIT--EDDKNILREL  104 (116)
T ss_dssp             HC---TESEEEEEEETTSHSH--HHHHHHHHHH
T ss_pred             HH---HCCEEEEEEECCCCCC--HHHHHHHHHH
Confidence            12   4899999999887433  2344444433

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PTZ00258 GTP-binding protein; Provisional

Probab=98.86  E-value=3.3e-08  Score=112.37  Aligned_cols=238  Identities=11%  Similarity=0.081  Sum_probs=125.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccc--------------cceEEEEEEcCCCcch
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTV--------------MKDICHLWELGSGTSR   96 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~--------------~k~~l~IwDlpG~~~~   96 (890)
                      ..++|.|||.||||||||+|+|++..   .++ |..+++...........              ...++.+.|+||...-
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~-pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENF-PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCC-CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            46799999999999999999998842   333 55554433322221100              0125899999996532


Q ss_pred             ----hhHHhhh-hccccccccCcEEEEEEeCCCcCc---------hHHHHHHHHHH--------HHHHHhhhhhhh-h--
Q psy11649         97 ----LEVASLF-SSFSLTAQSGFTLVLMLDLSRLNS---------LWTEAETFLAK--------FRAIFESNESVR-E--  151 (890)
Q Consensus        97 ----~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S---------~~~~L~~wlq~--------I~e~~~~ll~~~-~--  151 (890)
                          ..+...+ ..  ++  .+|++++|+|...-..         -.+.++....+        +.+..+++.... .  
T Consensus        99 a~~g~gLg~~fL~~--Ir--~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~  174 (390)
T PTZ00258         99 ASEGEGLGNAFLSH--IR--AVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKK  174 (390)
T ss_pred             CcchhHHHHHHHHH--HH--HCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccc
Confidence                2233333 11  22  4999999999852111         11222222121        222222111100 0  


Q ss_pred             -hc------ccc---cccccccccc---------cccccc----CCCCcEEEEeecc--cCCCCCCcchhhhhHHHHHHH
Q psy11649        152 -KR------GSF---EHFRTADEHR---------DKGLIR----TFPVPLILIGGKY--DLFENLEPNKKRIAVQCLRYL  206 (890)
Q Consensus       152 -~~------~~l---~~~~~~~~~~---------d~~li~----~l~IPiIVVgNK~--Dl~~d~d~e~r~~i~~~lr~l  206 (890)
                       ..      ..+   ++. +.+..|         +...+.    ....|+++|+|+.  |+...    .. -..+.++.+
T Consensus       175 ~~~~~~~~~~~l~~v~~~-L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~----~~-~~~~~l~~~  248 (390)
T PTZ00258        175 KKKEEKVELDVLKKVLEW-LEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQ----KN-KWLAKIKEW  248 (390)
T ss_pred             chhhHHHHHHHHHHHHHH-HHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhccc----ch-HHHHHHHHH
Confidence             00      000   000 000001         111111    2358999999999  76210    11 134567777


Q ss_pred             HHHc-CCeEEEEeccCCC-----------------------CHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccc
Q psy11649        207 AHVN-GASLLFHSSLDPG-----------------------LVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSV  262 (890)
Q Consensus       207 a~~~-Ga~l~etSAK~~~-----------------------nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~  262 (890)
                      +..+ +..++.+||+-..                       +++++.+....++ +          ..  -+-+.|.|..
T Consensus       249 ~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL-~----------li--~ffT~g~~e~  315 (390)
T PTZ00258        249 VGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLL-N----------LI--HFFTAGPDEV  315 (390)
T ss_pred             HHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHh-C----------CE--EEEcCCCCce
Confidence            7777 4889999986554                       4455544444332 1          11  0112233221


Q ss_pred             cccccCCCCCCCCccccccccccccchhHHHhhccc
Q psy11649        263 ASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGWI  298 (890)
Q Consensus       263 ~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~w~  298 (890)
                         ..=+++++++..+.+..+|.++...|.++.+|-
T Consensus       316 ---raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~  348 (390)
T PTZ00258        316 ---RCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMK  348 (390)
T ss_pred             ---eEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECc
Confidence               111255677788888999999999999999973

>cd04109 Rab28 Rab28 subfamily

Probab=98.84  E-value=1.2e-08  Score=106.80  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=93.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -++||+.+|+.....+...  .+.    ..-++|+|+|+|.|.++ +.++.|+..++.....                  
T Consensus        51 ~~~i~Dt~G~~~~~~l~~~--~~~----~ad~iilV~D~t~~~s~-~~~~~w~~~l~~~~~~------------------  105 (215)
T cd04109          51 TLQVWDIGGQSIGGKMLDK--YIY----GAHAVFLVYDVTNSQSF-ENLEDWYSMVRKVLKS------------------  105 (215)
T ss_pred             EEEEEECCCcHHHHHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhccc------------------
Confidence            3589999998766666665  222    22379999999999998 9999999998875442                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                             .                        ..++|+|||+||+|+...     .......++.+|..+|+..+++|+|
T Consensus       106 -------~------------------------~~~~piilVgNK~DL~~~-----~~v~~~~~~~~~~~~~~~~~~iSAk  149 (215)
T cd04109         106 -------S------------------------ETQPLVVLVGNKTDLEHN-----RTVKDDKHARFAQANGMESCLVSAK  149 (215)
T ss_pred             -------c------------------------CCCceEEEEEECcccccc-----cccCHHHHHHHHHHcCCEEEEEECC
Confidence                   0                        014789999999999631     2233446778899999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCCC
Q psy11649        552 DPGLVKRTRDILNHYAFSSHL  572 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~~~  572 (890)
                      .+.|++.++++|..++++.+.
T Consensus       150 tg~gv~~lf~~l~~~l~~~~~  170 (215)
T cd04109         150 TGDRVNLLFQQLAAELLGVDL  170 (215)
T ss_pred             CCCCHHHHHHHHHHHHHhccc
Confidence            999999999999999998643

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.84  E-value=2.2e-08  Score=95.45  Aligned_cols=140  Identities=17%  Similarity=0.112  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh--hccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF--SSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~--r~~~~~~~~a  113 (890)
                      +|+++||..|+|||||+++|-|...-|+.|.+++|.        .    =-.+||||.+--...+...  ..    ..++
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~--------d----~~~IDTPGEy~~~~~~Y~aL~tt----~~da   65 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFN--------D----KGDIDTPGEYFEHPRWYHALITT----LQDA   65 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhcccceeecc--------C----ccccCCchhhhhhhHHHHHHHHH----hhcc
Confidence            579999999999999999999988889999999863        1    1357899954221111111  11    1258


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|-.++++++.+   .                                  ..+......|+|-|.+|.|+.+    
T Consensus        66 dvi~~v~~and~~s~f---~----------------------------------p~f~~~~~k~vIgvVTK~DLae----  104 (148)
T COG4917          66 DVIIYVHAANDPESRF---P----------------------------------PGFLDIGVKKVIGVVTKADLAE----  104 (148)
T ss_pred             ceeeeeecccCccccC---C----------------------------------cccccccccceEEEEecccccc----
Confidence            9999999999998740   0                                  1123334567999999999963    


Q ss_pred             chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHH
Q psy11649        194 NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        .+-+ ...+++-.+-|+ ++|++|+.++.|+++|++++...
T Consensus       105 --d~dI-~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         105 --DADI-SLVKRWLREAGAEPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             --hHhH-HHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence              1122 334555556676 49999999999999999998654

>PLN03127 Elongation factor Tu; Provisional

Probab=98.83  E-value=8.7e-08  Score=111.40  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=94.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC------C------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK------N------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~------~------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      ..++|+++|..++|||||+++|++.      .            ++...+++++..+....   ..+.++.+.||||...
T Consensus        60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~---~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE---TAKRHYAHVDCPGHAD  136 (447)
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc---CCCeEEEEEECCCccc
Confidence            3688999999999999999999731      1            11224555553322221   1233789999999876


Q ss_pred             hhh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         96 RLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        96 ~~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      |.. +.....       .+|++++|+|.++...-  .....+..                                ....
T Consensus       137 f~~~~~~g~~-------~aD~allVVda~~g~~~--qt~e~l~~--------------------------------~~~~  175 (447)
T PLN03127        137 YVKNMITGAA-------QMDGGILVVSAPDGPMP--QTKEHILL--------------------------------ARQV  175 (447)
T ss_pred             hHHHHHHHHh-------hCCEEEEEEECCCCCch--hHHHHHHH--------------------------------HHHc
Confidence            522 222211       39999999998875331  11111111                                1224


Q ss_pred             CCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-----CCeEEEEecc---CCCC-------HHHHHHHHHHHH
Q psy11649        175 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-----GASLLFHSSL---DPGL-------VKRTRDILNHYA  236 (890)
Q Consensus       175 ~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-----Ga~l~etSAK---~~~n-------Id~Lk~~I~~~l  236 (890)
                      ++| +|+|.||+|+..+  .+..+.+..+++++...+     .++++++|+.   ++.|       +..|.+.|...+
T Consensus       176 gip~iIvviNKiDlv~~--~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        176 GVPSLVVFLNKVDVVDD--EELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCeEEEEEEeeccCCH--HHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            789 5789999998631  111222333455555443     2578888875   4555       667777776654

>KOG1490|consensus

Probab=98.82  E-value=1.4e-08  Score=115.26  Aligned_cols=165  Identities=17%  Similarity=0.212  Sum_probs=106.5

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEE---eccccce-EEEEEEcCCCcch----hhHHhhh
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKS---GKTVMKD-ICHLWELGSGTSR----LEVASLF  103 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~---g~~~~k~-~l~IwDlpG~~~~----~~Li~~~  103 (890)
                      .+...+++|+|.||||||||+|.++..+....     .|.|+++.   |....+. ..++.||||.-..    ...+...
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevq-----pYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq  239 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-----PYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ  239 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccC-----CcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH
Confidence            34578999999999999999999887433221     25555555   5555555 8999999996321    1111111


Q ss_pred             --h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        104 --S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       104 --r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                        + -..++    .+|+++.|+|....+  ++..-.+.. ..+..++.                          +.|+|+
T Consensus       240 sITALAHLr----aaVLYfmDLSe~CGy--Sva~QvkLf-hsIKpLFa--------------------------NK~~Il  286 (620)
T KOG1490|consen  240 IITALAHLR----SAVLYFMDLSEMCGY--SVAAQVKLY-HSIKPLFA--------------------------NKVTIL  286 (620)
T ss_pred             HHHHHHHhh----hhheeeeechhhhCC--CHHHHHHHH-HHhHHHhc--------------------------CCceEE
Confidence              0 01122    479999999997665  444433322 22222221                          479999


Q ss_pred             EeecccCCC--CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        181 IGGKYDLFE--NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       181 VgNK~Dl~~--d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |+||+|++.  +++++.+    +.+..+...-+++++.+|+.+.+|+-.++..-+..++.
T Consensus       287 vlNK~D~m~~edL~~~~~----~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa  342 (620)
T KOG1490|consen  287 VLNKIDAMRPEDLDQKNQ----ELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALLA  342 (620)
T ss_pred             EeecccccCccccCHHHH----HHHHHHHhccCceEEEecccchhceeeHHHHHHHHHHH
Confidence            999999973  4444333    23444455556899999999999999888777666654

>cd01868 Rab11_like Rab11-like

Probab=98.79  E-value=1.8e-08  Score=99.76  Aligned_cols=112  Identities=19%  Similarity=0.329  Sum_probs=84.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+.+.  .+.    ....+|+|+|++.+.++ +.+++|++.++++..                    
T Consensus        54 ~~l~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  106 (165)
T cd01868          54 AQIWDTAGQERYRAITSA--YYR----GAVGALLVYDITKKQTF-ENVERWLKELRDHAD--------------------  106 (165)
T ss_pred             EEEEeCCChHHHHHHHHH--HHC----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            589999998766655554  222    12369999999999997 889999887765311                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++|||||+|+...     .......+..+|...|...+.+|++.
T Consensus       107 --------------------------------~~~pi~vv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~  149 (165)
T cd01868         107 --------------------------------SNIVIMLVGNKSDLRHL-----RAVPTEEAKAFAEKNGLSFIETSALD  149 (165)
T ss_pred             --------------------------------CCCeEEEEEECcccccc-----ccCCHHHHHHHHHHcCCEEEEEECCC
Confidence                                            14799999999998632     11123345566777899999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.+++.|..++|
T Consensus       150 ~~~v~~l~~~l~~~i~  165 (165)
T cd01868         150 GTNVEEAFKQLLTEIY  165 (165)
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999998876

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.78  E-value=6.4e-08  Score=112.53  Aligned_cols=152  Identities=13%  Similarity=0.035  Sum_probs=93.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~   80 (890)
                      ...+|+++|..++|||||+.+|+...+                                 ....+++++..+...   ..
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~---~~   82 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF---ET   82 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE---cc
Confidence            468999999999999999999975210                                 011223333222221   11


Q ss_pred             cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCc---h---HHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS---L---WTEAETFLAKFRAIFESNESVREKRG  154 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S---~---~~~L~~wlq~I~e~~~~ll~~~~~~~  154 (890)
                      .+..++|+|+||+..|..-....    .  ..+|++|+|+|.+...-   +   -...+.|..                 
T Consensus        83 ~~~~i~lIDtPGh~~f~~~~~~g----~--~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~-----------------  139 (446)
T PTZ00141         83 PKYYFTIIDAPGHRDFIKNMITG----T--SQADVAILVVASTAGEFEAGISKDGQTREHALL-----------------  139 (446)
T ss_pred             CCeEEEEEECCChHHHHHHHHHh----h--hhcCEEEEEEEcCCCceecccCCCccHHHHHHH-----------------
Confidence            23389999999987763322222    1  14999999999987430   0   011111211                 


Q ss_pred             ccccccccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649        155 SFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR  227 (890)
Q Consensus       155 ~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~  227 (890)
                                      ...+++| +||+.||+|... +.+.+....+..+++.+....|     ++++++|+.+|.|+.+
T Consensus       140 ----------------~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        140 ----------------AFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             ----------------HHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                            2234787 678999999531 2233344555666776666554     5699999999999964

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.75  E-value=9.6e-08  Score=116.77  Aligned_cols=139  Identities=14%  Similarity=0.018  Sum_probs=84.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC------C--------------CCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDT------P--------------KPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~------~--------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      .-.+|+|+|.+|+|||||+++|+...+.      .              ..+++++..+....   ..+.++++|||||.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~---~~~~~i~liDTPG~   85 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF---WKGHRINIIDTPGH   85 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE---ECCeEEEEEECCCC
Confidence            4568999999999999999999752110      0              12233332221111   12348999999999


Q ss_pred             cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      ..+...+...    ++  .+|++|+|+|.++.... .....| +.+.                                .
T Consensus        86 ~~~~~~~~~~----l~--~~D~~ilVvda~~g~~~-~~~~~~-~~~~--------------------------------~  125 (689)
T TIGR00484        86 VDFTVEVERS----LR--VLDGAVAVLDAVGGVQP-QSETVW-RQAN--------------------------------R  125 (689)
T ss_pred             cchhHHHHHH----HH--HhCEEEEEEeCCCCCCh-hHHHHH-HHHH--------------------------------H
Confidence            8775544444    11  48999999999986553 222222 2111                                1


Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC----eEEEEeccCC
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA----SLLFHSSLDP  222 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga----~l~etSAK~~  222 (890)
                      .++|+++|+||+|+..    ..   ....+..+...++.    ..+.+|+..+
T Consensus       126 ~~~p~ivviNK~D~~~----~~---~~~~~~~i~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       126 YEVPRIAFVNKMDKTG----AN---FLRVVNQIKQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             cCCCEEEEEECCCCCC----CC---HHHHHHHHHHHhCCCceeEEeccccCCC
Confidence            2689999999999852    11   12234444444443    2577787655

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1191|consensus

Probab=98.72  E-value=4.5e-08  Score=111.42  Aligned_cols=167  Identities=18%  Similarity=0.128  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhh-----hc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLF-----SS  105 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~-----r~  105 (890)
                      ..+|+++|.||||||||+|.|.+.+   ..+.|+++-|-.-.   .....+.++.+.||+|..+ -.+.+...     +.
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea---~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEA---QVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhhee---EeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4899999999999999999999964   25567766552111   1123345899999999754 21122111     12


Q ss_pred             cccccccCcEEEEEEeC--CCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        106 FSLTAQSGFTLVLMLDL--SRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~Dl--Snp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                      ...   .+|++++|+|.  +..++- ..+...++....-+                 ...+      .....-|+++|.|
T Consensus       345 ~~~---~advi~~vvda~~~~t~sd-~~i~~~l~~~~~g~-----------------~~~~------~~~~~~~~i~~~n  397 (531)
T KOG1191|consen  345 RIE---RADVILLVVDAEESDTESD-LKIARILETEGVGL-----------------VVIV------NKMEKQRIILVAN  397 (531)
T ss_pred             HHh---hcCEEEEEecccccccccc-hHHHHHHHHhccce-----------------EEEe------ccccccceEEEec
Confidence            222   49999999999  444332 12222222111100                 0000      1113579999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcC---C-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNG---A-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~G---a-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |.|+....+.... ..   ..+... .|   . ...++|++++++++.|...+.+..
T Consensus       398 k~D~~s~~~~~~~-~~---~~~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~  449 (531)
T KOG1191|consen  398 KSDLVSKIPEMTK-IP---VVYPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIV  449 (531)
T ss_pred             hhhccCccccccC-Cc---eecccc-ccCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence            9999754331111 01   111111 11   1 356799999999999988887775

>cd04133 Rop_like Rop subfamily

Probab=98.71  E-value=6.3e-08  Score=98.83  Aligned_cols=115  Identities=23%  Similarity=0.285  Sum_probs=85.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..||+..|+..+..+...  .+.    ....+|||+|++.+.++ +.+ ++|+..++.+..                   
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~a~~~ilvyd~~~~~Sf-~~~~~~w~~~i~~~~~-------------------  104 (176)
T cd04133          51 LGLWDTAGQEDYNRLRPL--SYR----GADVFVLAFSLISRASY-ENVLKKWVPELRHYAP-------------------  104 (176)
T ss_pred             EEEEECCCCccccccchh--hcC----CCcEEEEEEEcCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            389999999887776655  232    23489999999999999 555 789876643210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC-----hhHHHHHHHHHHHHHHHcCCc-e
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE-----PNKKRIAVQCLRYLAHVNGAS-L  545 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~-----~E~~d~Iq~~lR~fcl~yGAs-L  545 (890)
                                                        .+|+||||||+|+..+-.     .+......+....+|..+|++ .
T Consensus       105 ----------------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~  150 (176)
T cd04133         105 ----------------------------------NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAY  150 (176)
T ss_pred             ----------------------------------CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEE
Confidence                                              279999999999964210     011123466677889999985 8


Q ss_pred             eEeccCChhhHHHHHHHHhhhh
Q psy11649        546 LFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       546 ~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      |-||+|++.|++.+++.+...+
T Consensus       151 ~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         151 IECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             EECCCCcccCHHHHHHHHHHHH
Confidence            9999999999999999887654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PRK12740 elongation factor G; Reviewed

Probab=98.70  E-value=1.5e-07  Score=114.82  Aligned_cols=105  Identities=13%  Similarity=0.028  Sum_probs=66.3

Q ss_pred             EcCCCCCHHHHHHHHHcCCC------CC--------------CCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHH
Q psy11649         41 IGTKSVGKSTLVFRFLEKND------TP--------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVA  100 (890)
Q Consensus        41 VGd~nvGKSSLInrL~~~~~------~~--------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li  100 (890)
                      +|..++|||||+++|+...+      +.              ..+++++..+.....   .+..+++|||||...+....
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~---~~~~i~liDtPG~~~~~~~~   77 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW---KGHKINLIDTPGHVDFTGEV   77 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE---CCEEEEEEECCCcHHHHHHH
Confidence            69999999999999965211      00              123333322222221   23479999999997765444


Q ss_pred             hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      ..+    +.  .+|++|+|+|.++..+. .....|. .+.                                ..++|+++
T Consensus        78 ~~~----l~--~aD~vllvvd~~~~~~~-~~~~~~~-~~~--------------------------------~~~~p~ii  117 (668)
T PRK12740         78 ERA----LR--VLDGAVVVVCAVGGVEP-QTETVWR-QAE--------------------------------KYGVPRII  117 (668)
T ss_pred             HHH----HH--HhCeEEEEEeCCCCcCH-HHHHHHH-HHH--------------------------------HcCCCEEE
Confidence            444    11  38999999999987664 2222232 111                                12689999


Q ss_pred             EeecccCC
Q psy11649        181 IGGKYDLF  188 (890)
Q Consensus       181 VgNK~Dl~  188 (890)
                      |+||+|+.
T Consensus       118 v~NK~D~~  125 (668)
T PRK12740        118 FVNKMDRA  125 (668)
T ss_pred             EEECCCCC
Confidence            99999985

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.70  E-value=1.6e-07  Score=109.22  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=98.2

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCC--CccceeEEEEE--------------Eecc-----------
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKP--TLALEYIYARK--------------SGKT-----------   79 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kp--tigvdY~f~~~--------------~g~~-----------   79 (890)
                      ....+.|.++|.-..|||||+..|++..     +....  |+.+.|.+...              ....           
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            3456899999999999999999999831     11122  22333332210              0000           


Q ss_pred             ---ccceEEEEEEcCCCcchh-hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649         80 ---VMKDICHLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGS  155 (890)
Q Consensus        80 ---~~k~~l~IwDlpG~~~~~-~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~  155 (890)
                         .....+.+.|+||.+.|. .++....       .+|++++|+|.++.... ......+..+                
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~-------~~D~alLVVda~~g~~~-~qT~ehl~i~----------------  166 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAA-------VMDAALLLIAANESCPQ-PQTSEHLAAV----------------  166 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHh-------hCCEEEEEEECCCCccc-hhhHHHHHHH----------------
Confidence               001268999999987662 2222222       48999999999874211 1111111111                


Q ss_pred             cccccccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHH
Q psy11649        156 FEHFRTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDI  231 (890)
Q Consensus       156 l~~~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~  231 (890)
                                      ..+++ |++||.||+|+..   .+......++++.+...   .+++++++||++|.|++.|+++
T Consensus       167 ----------------~~lgi~~iIVvlNKiDlv~---~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~  227 (460)
T PTZ00327        167 ----------------EIMKLKHIIILQNKIDLVK---EAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEY  227 (460)
T ss_pred             ----------------HHcCCCcEEEEEecccccC---HHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHH
Confidence                            11244 5899999999862   11222223344444333   3578999999999999999999


Q ss_pred             HHHHH
Q psy11649        232 LNHYA  236 (890)
Q Consensus       232 I~~~l  236 (890)
                      |...+
T Consensus       228 L~~~l  232 (460)
T PTZ00327        228 ICTQI  232 (460)
T ss_pred             HHhhC
Confidence            98654

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.69  E-value=9.8e-09  Score=96.28  Aligned_cols=115  Identities=17%  Similarity=0.073  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      +||+++|+.|||||||+.++......+.+++...+                         +..+...+    ++  +++.
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-------------------------~~~~~~~~----~~--s~~~   49 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-------------------------IDVYDPTS----YE--SFDV   49 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-------------------------hhhccccc----cC--CCCE
Confidence            48999999999999999999876655544422110                         11111111    22  4789


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +++|||.++..++ +.+  |...+...                             ....+|.++++||.|+.+     +
T Consensus        50 ~~~v~~~~~~~s~-~~~--~~~~i~~~-----------------------------~k~dl~~~~~~nk~dl~~-----~   92 (124)
T smart00010       50 VLQCWRVDDRDSA-DNK--NVPEVLVG-----------------------------NKSDLPILVGGNRDVLEE-----E   92 (124)
T ss_pred             EEEEEEccCHHHH-HHH--hHHHHHhc-----------------------------CCCCCcEEEEeechhhHh-----h
Confidence            9999999999887 444  76544321                             123578999999999832     2


Q ss_pred             hhhhHHHHHHHHHHcCCeEEEEeccCCCCHH
Q psy11649        196 KRIAVQCLRYLAHVNGASLLFHSSLDPGLVK  226 (890)
Q Consensus       196 r~~i~~~lr~la~~~Ga~l~etSAK~~~nId  226 (890)
                      +....+.        +..++++|++++.|+.
T Consensus        93 ~~~~~~~--------~~~~~~~s~~~~~~~~  115 (124)
T smart00010       93 RQVATEE--------GLEFAETSAKTPEEGE  115 (124)
T ss_pred             CcCCHHH--------HHHHHHHhCCCcchhh
Confidence            2222222        2234567899999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>cd01866 Rab2 Rab2 subfamily

Probab=98.69  E-value=5.6e-08  Score=97.15  Aligned_cols=113  Identities=16%  Similarity=0.238  Sum_probs=85.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..||+..|...+..+...  .+.    ...++++|+|++.|.++ +.+..|+..++.+...                   
T Consensus        55 ~~i~Dt~G~~~~~~~~~~--~~~----~~d~il~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  108 (168)
T cd01866          55 LQIWDTAGQESFRSITRS--YYR----GAAGALLVYDITRRETF-NHLTSWLEDARQHSNS-------------------  108 (168)
T ss_pred             EEEEECCCcHHHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCCC-------------------
Confidence            479999998655544333  122    12369999999999987 8899999887764210                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       ++|+||||||.|+...     ...-...++.+|.++|+..|.+|++.
T Consensus       109 ---------------------------------~~pvivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (168)
T cd01866         109 ---------------------------------NMTIMLIGNKCDLESR-----REVSYEEGEAFAKEHGLIFMETSAKT  150 (168)
T ss_pred             ---------------------------------CCcEEEEEECcccccc-----cCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                             3799999999999731     11122346778888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.+++++.+++|.
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999999874

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04120 Rab12 Rab12 subfamily

Probab=98.68  E-value=6.7e-08  Score=100.88  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=83.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+...  -+.    ...++|+|+|+|.+.++ +.++.|+..++....                    
T Consensus        51 l~iwDtaGqe~~~~l~~~--y~~----~ad~iIlVfDvtd~~Sf-~~l~~w~~~i~~~~~--------------------  103 (202)
T cd04120          51 LQIWDTAGQERFNSITSA--YYR----SAKGIILVYDITKKETF-DDLPKWMKMIDKYAS--------------------  103 (202)
T ss_pred             EEEEeCCCchhhHHHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            389999999776655443  122    23378999999999998 889999876543110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K  551 (890)
                                                      -++|+||||||+|+..     ..+.-......+|..+ |...|.||+|
T Consensus       104 --------------------------------~~~piilVgNK~DL~~-----~~~v~~~~~~~~a~~~~~~~~~etSAk  146 (202)
T cd04120         104 --------------------------------EDAELLLVGNKLDCET-----DREISRQQGEKFAQQITGMRFCEASAK  146 (202)
T ss_pred             --------------------------------CCCcEEEEEECccccc-----ccccCHHHHHHHHHhcCCCEEEEecCC
Confidence                                            0379999999999863     1222234456777775 7888999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.+++.|...+..
T Consensus       147 tg~gV~e~F~~l~~~~~~  164 (202)
T cd04120         147 DNFNVDEIFLKLVDDILK  164 (202)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999887753

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PRK12739 elongation factor G; Reviewed

Probab=98.68  E-value=3.2e-07  Score=112.30  Aligned_cols=112  Identities=14%  Similarity=0.051  Sum_probs=71.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------C--------------CCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------T--------------PKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~--------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      .-.+|+|+|..++|||||+++|+....      .              ...+++++-.......   .+.+++++||||.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~---~~~~i~liDTPG~   83 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW---KGHRINIIDTPGH   83 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE---CCEEEEEEcCCCH
Confidence            457899999999999999999975211      0              1233444432222221   2348999999998


Q ss_pred             cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      ..|..-+...    +.  .+|++|+|+|.+....-  .-...+..+                                ..
T Consensus        84 ~~f~~e~~~a----l~--~~D~~ilVvDa~~g~~~--qt~~i~~~~--------------------------------~~  123 (691)
T PRK12739         84 VDFTIEVERS----LR--VLDGAVAVFDAVSGVEP--QSETVWRQA--------------------------------DK  123 (691)
T ss_pred             HHHHHHHHHH----HH--HhCeEEEEEeCCCCCCH--HHHHHHHHH--------------------------------HH
Confidence            7654433332    11  48999999999886442  112222111                                11


Q ss_pred             CCCcEEEEeecccCC
Q psy11649        174 FPVPLILIGGKYDLF  188 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~  188 (890)
                      .++|+++++||+|+.
T Consensus       124 ~~~p~iv~iNK~D~~  138 (691)
T PRK12739        124 YGVPRIVFVNKMDRI  138 (691)
T ss_pred             cCCCEEEEEECCCCC
Confidence            368999999999986

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.67  E-value=1e-07  Score=99.41  Aligned_cols=110  Identities=11%  Similarity=0.153  Sum_probs=84.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+..|+..+..+...  .+..    .-++|+|+|++.+.++ +.++.|+..++.+..                    
T Consensus        46 l~iwDt~G~e~~~~l~~~--~~~~----ad~~ilV~D~t~~~S~-~~i~~w~~~i~~~~~--------------------   98 (200)
T smart00176       46 FNVWDTAGQEKFGGLRDG--YYIQ----GQCAIIMFDVTARVTY-KNVPNWHRDLVRVCE--------------------   98 (200)
T ss_pred             EEEEECCCchhhhhhhHH--HhcC----CCEEEEEEECCChHHH-HHHHHHHHHHHHhCC--------------------
Confidence            489999999766655443  1222    2378999999999999 888999988865211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       ++|+||||||+|+-...-.+      +.+ .+|...++..|.||+|.
T Consensus        99 ---------------------------------~~piilvgNK~Dl~~~~v~~------~~~-~~~~~~~~~~~e~SAk~  138 (200)
T smart00176       99 ---------------------------------NIPIVLCGNKVDVKDRKVKA------KSI-TFHRKKNLQYYDISAKS  138 (200)
T ss_pred             ---------------------------------CCCEEEEEECcccccccCCH------HHH-HHHHHcCCEEEEEeCCC
Confidence                                             37999999999985321111      112 57888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++++|...++.
T Consensus       139 ~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      139 NYNFEKPFLWLARKLIG  155 (200)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999999875

Ran is involved in the active transport of proteins through nuclear pores.

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.66  E-value=2.2e-07  Score=99.75  Aligned_cols=164  Identities=12%  Similarity=0.051  Sum_probs=99.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-------hhhHHhhhhccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-------RLEVASLFSSFS  107 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-------~~~Li~~~r~~~  107 (890)
                      ..+|+++|..|+|||||+|+|..+....-..+++.-...+..-...+...+.+||+||...       ++.+...+   -
T Consensus        39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~---l  115 (296)
T COG3596          39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY---L  115 (296)
T ss_pred             ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH---h
Confidence            5789999999999999999999754332222221100001111111123699999999654       33333333   1


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      .   ..|.++++.|..++.-- -....|.+.+..                               ....|+++|.|.+|.
T Consensus       116 ~---~~DLvL~l~~~~draL~-~d~~f~~dVi~~-------------------------------~~~~~~i~~VtQ~D~  160 (296)
T COG3596         116 P---KLDLVLWLIKADDRALG-TDEDFLRDVIIL-------------------------------GLDKRVLFVVTQADR  160 (296)
T ss_pred             h---hccEEEEeccCCCcccc-CCHHHHHHHHHh-------------------------------ccCceeEEEEehhhh
Confidence            1   38899999999886432 122333332211                               123699999999998


Q ss_pred             CCC----------CCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        188 FEN----------LEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d----------~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+-          .++..++.+.+....+.+..  --++++.|.+.+-|++.|-.++...+
T Consensus       161 a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l  221 (296)
T COG3596         161 AEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITAL  221 (296)
T ss_pred             hccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence            642          12334555555444443332  23678888899999999988777765

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=98.66  E-value=1.1e-07  Score=98.33  Aligned_cols=118  Identities=14%  Similarity=0.256  Sum_probs=88.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|++.|+..+..+...  .+.    ...++|+|+|++.|.++ +.++.|+..++..+.-                   
T Consensus        52 l~l~Dt~G~~~~~~~~~~--~~~----~a~~~ilv~D~t~~~s~-~~~~~~~~~i~~~~~~-------------------  105 (201)
T cd04107          52 LQLWDIAGQERFGGMTRV--YYR----GAVGAIIVFDVTRPSTF-EAVLKWKADLDSKVTL-------------------  105 (201)
T ss_pred             EEEEECCCchhhhhhHHH--HhC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc-------------------
Confidence            489999999776665544  222    12379999999999998 8899998887654431                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K  551 (890)
                                +                   ....+|+||||||+|+..     +.......++.+|..+| ...|.||+|
T Consensus       106 ----------~-------------------~~~~~piilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~e~Sak  151 (201)
T cd04107         106 ----------P-------------------NGEPIPCLLLANKCDLKK-----RLAKDGEQMDQFCKENGFIGWFETSAK  151 (201)
T ss_pred             ----------c-------------------CCCCCcEEEEEECCCccc-----ccccCHHHHHHHHHHcCCceEEEEeCC
Confidence                      0                   001489999999999973     11222345677888899 689999999


Q ss_pred             ChhhHHHHHHHHhhhhcCC
Q psy11649        552 DPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~  570 (890)
                      .+.|++.+++.|...++..
T Consensus       152 ~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         152 EGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998863

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=98.65  E-value=9.6e-08  Score=93.88  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=87.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+..|...+..+.+.  .+.    ...++|+|+|+++|.++ +.++.|+..+..+...                   
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~ilv~D~~~~~s~-~~~~~~~~~~~~~~~~-------------------  104 (168)
T cd04119          51 VNFFDLSGHPEYLEVRNE--FYK----DTQGVLLVYDVTDRQSF-EALDSWLKEMKQEGGP-------------------  104 (168)
T ss_pred             EEEEECCccHHHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HhHHHHHHHHHHhccc-------------------
Confidence            489999998666655554  222    12379999999999987 8899999888765432                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                             +     ....++|+|+|+||+|+....     ..-....+.+|..+|...|.+|++.
T Consensus       105 -----------------------~-----~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  151 (168)
T cd04119         105 -----------------------H-----GNMENIVVVVCANKIDLTKHR-----AVSEDEGRLWAESKGFKYFETSACT  151 (168)
T ss_pred             -----------------------c-----ccCCCceEEEEEEchhccccc-----ccCHHHHHHHHHHcCCeEEEEECCC
Confidence                                   0     012358999999999997311     1123445667888999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.+++.|...++
T Consensus       152 ~~gi~~l~~~l~~~l~  167 (168)
T cd04119         152 GEGVNEMFQTLFSSIV  167 (168)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988765

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.65  E-value=7.8e-08  Score=94.74  Aligned_cols=112  Identities=15%  Similarity=0.258  Sum_probs=87.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+.+.  .+..    ..++|+|+|++.+.++ +.+.+|+..++.+..                    
T Consensus        50 l~i~D~~g~~~~~~~~~~--~~~~----~~~~ii~fd~~~~~S~-~~~~~~~~~i~~~~~--------------------  102 (162)
T PF00071_consen   50 LEIWDTSGQERFDSLRDI--FYRN----SDAIIIVFDVTDEESF-ENLKKWLEEIQKYKP--------------------  102 (162)
T ss_dssp             EEEEEETTSGGGHHHHHH--HHTT----ESEEEEEEETTBHHHH-HTHHHHHHHHHHHST--------------------
T ss_pred             cccccccccccccccccc--cccc----cccccccccccccccc-ccccccccccccccc--------------------
Confidence            389999998766665554  1221    2379999999999999 889999998776332                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+||||||+|+-.     ....-.+.++.+|.++|+..+-+|+|+
T Consensus       103 --------------------------------~~~~iivvg~K~D~~~-----~~~v~~~~~~~~~~~~~~~~~e~Sa~~  145 (162)
T PF00071_consen  103 --------------------------------EDIPIIVVGNKSDLSD-----EREVSVEEAQEFAKELGVPYFEVSAKN  145 (162)
T ss_dssp             --------------------------------TTSEEEEEEETTTGGG-----GSSSCHHHHHHHHHHTTSEEEEEBTTT
T ss_pred             --------------------------------ccccceeeeccccccc-----cccchhhHHHHHHHHhCCEEEEEECCC
Confidence                                            1379999999999885     112223457889999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|+..++..+.+.+.
T Consensus       146 ~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  146 GENVKEIFQELIRKIL  161 (162)
T ss_dssp             TTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04131 Rnd Rnd subfamily

Probab=98.65  E-value=8.5e-08  Score=97.80  Aligned_cols=113  Identities=18%  Similarity=0.267  Sum_probs=81.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHH-HHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE-AETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~s-L~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .++|+..|+..+..+...  ...    ....+|+|+|++.|.++ +. +++|+..++++..                   
T Consensus        51 l~iwDt~G~~~~~~~~~~--~~~----~a~~~ilvfdit~~~Sf-~~~~~~w~~~i~~~~~-------------------  104 (178)
T cd04131          51 LSLWDTSGSPYYDNVRPL--CYP----DSDAVLICFDISRPETL-DSVLKKWRGEIQEFCP-------------------  104 (178)
T ss_pred             EEEEECCCchhhhhcchh--hcC----CCCEEEEEEECCChhhH-HHHHHHHHHHHHHHCC-------------------
Confidence            489999999766654444  111    22379999999999999 66 5899887754210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh------h-HHHHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP------N-KKRIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~------E-~~d~Iq~~lR~fcl~yGA-  543 (890)
                                                        .+|+||||||+|+..+...      . +...-......||.++|| 
T Consensus       105 ----------------------------------~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~  150 (178)
T cd04131         105 ----------------------------------NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE  150 (178)
T ss_pred             ----------------------------------CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCC
Confidence                                              2689999999998642110      0 011234578899999998 


Q ss_pred             ceeEeccCChhh-HHHHHHHHhh
Q psy11649        544 SLLFHSSLDPGL-VKRTRDILNH  565 (890)
Q Consensus       544 sL~ftS~K~~~n-~~~l~kyi~h  565 (890)
                      ..|.||+|.+.| ++.++..+.-
T Consensus       151 ~~~E~SA~~~~~~v~~~F~~~~~  173 (178)
T cd04131         151 IYLECSAFTSEKSVRDIFHVATM  173 (178)
T ss_pred             EEEECccCcCCcCHHHHHHHHHH
Confidence            689999999996 9998887765

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.64  E-value=3.2e-07  Score=108.69  Aligned_cols=114  Identities=15%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc--CCCC----C------CCC----------ccceeEEEEEEeccccceEEEEEEcC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLE--KNDT----P------KPT----------LALEYIYARKSGKTVMKDICHLWELG   91 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~--~~~~----~------kpt----------igvdY~f~~~~g~~~~k~~l~IwDlp   91 (890)
                      ..++|+|+|.+++|||||+++|+.  +...    .      ..+          .|+.+.... ......+.++++||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~-~~~~~~~~~inliDTP   88 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSV-MQFPYRDCLVNLLDTP   88 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEE-EEEeeCCeEEEEEECC
Confidence            356899999999999999999863  1100    0      001          111111111 1111224489999999


Q ss_pred             CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649         92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus        92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                      |+..|.......    ++  .+|++|+|+|.++...  .....+++..+.                              
T Consensus        89 G~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~--~~t~~l~~~~~~------------------------------  130 (527)
T TIGR00503        89 GHEDFSEDTYRT----LT--AVDNCLMVIDAAKGVE--TRTRKLMEVTRL------------------------------  130 (527)
T ss_pred             ChhhHHHHHHHH----HH--hCCEEEEEEECCCCCC--HHHHHHHHHHHh------------------------------
Confidence            997765433333    12  4999999999988533  244444432211                              


Q ss_pred             cCCCCcEEEEeecccCC
Q psy11649        172 RTFPVPLILIGGKYDLF  188 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~  188 (890)
                        .++|+++++||+|+.
T Consensus       131 --~~~PiivviNKiD~~  145 (527)
T TIGR00503       131 --RDTPIFTFMNKLDRD  145 (527)
T ss_pred             --cCCCEEEEEECcccc
Confidence              258999999999984

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04122 Rab14 Rab14 subfamily

Probab=98.64  E-value=9.7e-08  Score=94.99  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+...  .+.    ...++|+|+|++.|.++ +.++.|+..++....                    
T Consensus        53 l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  105 (166)
T cd04122          53 LQIWDTAGQERFRAVTRS--YYR----GAAGALMVYDITRRSTY-NHLSSWLTDARNLTN--------------------  105 (166)
T ss_pred             EEEEECCCcHHHHHHHHH--Hhc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            389999998766655443  122    23489999999999988 888999876543110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+||||||+|+....     ......++.+|..+++..+.||++.
T Consensus       106 --------------------------------~~~~iiiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~  148 (166)
T cd04122         106 --------------------------------PNTVIFLIGNKADLEAQR-----DVTYEEAKQFADENGLLFLECSAKT  148 (166)
T ss_pred             --------------------------------CCCeEEEEEECccccccc-----CcCHHHHHHHHHHcCCEEEEEECCC
Confidence                                            037899999999996431     1223456677888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++.-+.+.+|.
T Consensus       149 ~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         149 GENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999888864

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>smart00175 RAB Rab subfamily of small GTPases

Probab=98.63  E-value=1e-07  Score=93.70  Aligned_cols=112  Identities=16%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+++|...+..+...  .+..    .-++|+|+|+++|+++ +.+..|++.+..+..                    
T Consensus        51 ~~l~D~~G~~~~~~~~~~--~~~~----~d~~ilv~d~~~~~s~-~~~~~~l~~~~~~~~--------------------  103 (164)
T smart00175       51 LQIWDTAGQERFRSITSS--YYRG----AVGALLVYDITNRESF-ENLKNWLKELREYAD--------------------  103 (164)
T ss_pred             EEEEECCChHHHHHHHHH--HhCC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            589999998766655555  2322    2289999999999998 888889887766421                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+|||+||+|+....+     .-...++.+|.++|+..+.+|++.
T Consensus       104 --------------------------------~~~pivvv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~  146 (164)
T smart00175      104 --------------------------------PNVVIMLVGNKSDLEDQRQ-----VSREEAEAFAEEHGLPFFETSAKT  146 (164)
T ss_pred             --------------------------------CCCeEEEEEEchhcccccC-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            0489999999999764211     112234567888999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.+++.++..|..+++
T Consensus       147 ~~~i~~l~~~i~~~~~  162 (164)
T smart00175      147 NTNVEEAFEELAREIL  162 (164)
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988764

Rab GTPases are implicated in vesicle trafficking.

>cd01882 BMS1 Bms1

Probab=98.62  E-value=1.2e-06  Score=92.99  Aligned_cols=140  Identities=18%  Similarity=0.196  Sum_probs=82.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      .....|+|+|.+|+|||||++.+++....  .....| .+.  ...   ..+.++.++|+||..  ..+.....      
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~~---~~~~~i~~vDtPg~~--~~~l~~ak------  102 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VVT---GKKRRLTFIECPNDI--NAMIDIAK------  102 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EEe---cCCceEEEEeCCchH--HHHHHHHH------
Confidence            34577999999999999999999874211  111111 010  111   123478999999853  33333332      


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE-EEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI-LIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI-VVgNK~Dl~~  189 (890)
                       .+|++++|+|.+.....  ....++..+.                                ..++|.+ +|.||+|+..
T Consensus       103 -~aDvVllviDa~~~~~~--~~~~i~~~l~--------------------------------~~g~p~vi~VvnK~D~~~  147 (225)
T cd01882         103 -VADLVLLLIDASFGFEM--ETFEFLNILQ--------------------------------VHGFPRVMGVLTHLDLFK  147 (225)
T ss_pred             -hcCEEEEEEecCcCCCH--HHHHHHHHHH--------------------------------HcCCCeEEEEEeccccCC
Confidence             38999999999875543  2222222111                                1257754 5999999863


Q ss_pred             CCCcchhhhhHHHHHH-HHHH--cCCeEEEEeccCCC
Q psy11649        190 NLEPNKKRIAVQCLRY-LAHV--NGASLLFHSSLDPG  223 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~-la~~--~Ga~l~etSAK~~~  223 (890)
                      +  .+...-....+++ +...  -+.+++++||+++-
T Consensus       148 ~--~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         148 K--NKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             c--HHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            1  1112222334433 3322  25789999999874

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.62  E-value=1.2e-07  Score=97.35  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=82.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .+||+..|+..+..+...  .+.    ...++|||+|+|++.++ +.+ +.|...++++..                   
T Consensus        55 l~iwDtaG~e~~~~~~~~--~~~----~ad~~ilvyDit~~~Sf-~~~~~~w~~~i~~~~~-------------------  108 (182)
T cd04172          55 LSLWDTSGSPYYDNVRPL--SYP----DSDAVLICFDISRPETL-DSVLKKWKGEIQEFCP-------------------  108 (182)
T ss_pred             EEEEECCCchhhHhhhhh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHCC-------------------
Confidence            489999999776665444  122    22378999999999999 654 899887765311                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh------hH-HHHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP------NK-KRIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~------E~-~d~Iq~~lR~fcl~yGA-  543 (890)
                                                        .+|+||||||+|+-.+...      +. ...-.+....+|.++|| 
T Consensus       109 ----------------------------------~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~  154 (182)
T cd04172         109 ----------------------------------NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAA  154 (182)
T ss_pred             ----------------------------------CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence                                              2689999999998542211      00 11234568899999997 


Q ss_pred             ceeEeccCChhh-HHHHHHHHhhh
Q psy11649        544 SLLFHSSLDPGL-VKRTRDILNHY  566 (890)
Q Consensus       544 sL~ftS~K~~~n-~~~l~kyi~hr  566 (890)
                      ..+.||+|.+.| ++.++..+.-.
T Consensus       155 ~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         155 TYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             EEEECCcCCCCCCHHHHHHHHHHH
Confidence            789999999999 99988877653

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PRK13768 GTPase; Provisional

Probab=98.61  E-value=3.6e-07  Score=98.69  Aligned_cols=121  Identities=14%  Similarity=0.049  Sum_probs=70.7

Q ss_pred             EEEEEEcCCCcchh---hHHhhh-hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649         84 ICHLWELGSGTSRL---EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEH  158 (890)
Q Consensus        84 ~l~IwDlpG~~~~~---~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~  158 (890)
                      .+.+||+||+.++.   .....+ +.  +....++++++|+|.+...+..+ ....|+....+.                
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~--l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~----------------  159 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVER--LSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL----------------  159 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHH--HHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH----------------
Confidence            57899999987642   233333 11  11001789999999977554312 112222211110                


Q ss_pred             ccccccccccccccCCCCcEEEEeecccCCCCCCcchh-hhhH-----------------HHHHHH---HHHcC--CeEE
Q psy11649        159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK-RIAV-----------------QCLRYL---AHVNG--ASLL  215 (890)
Q Consensus       159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r-~~i~-----------------~~lr~l---a~~~G--a~l~  215 (890)
                                    ..++|+++|+||+|+....+.+.. +.+.                 ...+.+   ....+  .+++
T Consensus       160 --------------~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi  225 (253)
T PRK13768        160 --------------RLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVI  225 (253)
T ss_pred             --------------HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEE
Confidence                          126899999999998642111110 1011                 001112   22334  5789


Q ss_pred             EEeccCCCCHHHHHHHHHHHH
Q psy11649        216 FHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       216 etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|++++.|++++.++|...+
T Consensus       226 ~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        226 PVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             EEECCCCcCHHHHHHHHHHHc
Confidence            999999999999999999887

>cd04112 Rab26 Rab26 subfamily

Probab=98.60  E-value=1.4e-07  Score=96.80  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=85.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+..|+..+..+...  .+..    ..++|+|+|++.+.++ +.++.|+..++++..                    
T Consensus        52 ~~i~Dt~G~~~~~~~~~~--~~~~----ad~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~--------------------  104 (191)
T cd04112          52 LQIWDTAGQERFRSVTHA--YYRD----AHALLLLYDITNKASF-DNIRAWLTEIKEYAQ--------------------  104 (191)
T ss_pred             EEEEeCCCcHHHHHhhHH--HccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            479999998665554433  1221    2378999999999988 888889887765211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++|||||+|+...     .......++.++..+|...+.+|++.
T Consensus       105 --------------------------------~~~piiiv~NK~Dl~~~-----~~~~~~~~~~l~~~~~~~~~e~Sa~~  147 (191)
T cd04112         105 --------------------------------EDVVIMLLGNKADMSGE-----RVVKREDGERLAKEYGVPFMETSAKT  147 (191)
T ss_pred             --------------------------------CCCcEEEEEEcccchhc-----cccCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            14899999999998731     11112346677888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~  571 (890)
                      +.|++.++.+|..++.+-+
T Consensus       148 ~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         148 GLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999887654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=98.60  E-value=1.3e-07  Score=94.20  Aligned_cols=113  Identities=15%  Similarity=0.180  Sum_probs=85.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|++.|+..+..+.+.  .+.    ..-++|+|+|++.+.++ +.++.|+..++.+..                    
T Consensus        54 l~l~D~~g~~~~~~~~~~--~~~----~ad~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  106 (167)
T cd01867          54 LQIWDTAGQERFRTITTA--YYR----GAMGIILVYDITDEKSF-ENIRNWMRNIEEHAS--------------------  106 (167)
T ss_pred             EEEEeCCchHHHHHHHHH--HhC----CCCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC--------------------
Confidence            589999998776665544  222    22389999999999987 889999988765311                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++|||||+|+...-     +.-.+.++.++..++...+.+|++.
T Consensus       107 --------------------------------~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  149 (167)
T cd01867         107 --------------------------------EDVERMLVGNKCDMEEKR-----VVSKEEGEALADEYGIKFLETSAKA  149 (167)
T ss_pred             --------------------------------CCCcEEEEEECccccccc-----CCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            147999999999997421     1112336667788899999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|.-+++.
T Consensus       150 ~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         150 NINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999877653

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04111 Rab39 Rab39 subfamily

Probab=98.60  E-value=1.4e-07  Score=98.68  Aligned_cols=134  Identities=17%  Similarity=0.216  Sum_probs=98.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+...  .+..    .-.+++|+|++.|.++ +.+.+|+..+..+...                   
T Consensus        54 l~i~Dt~G~~~~~~~~~~--~~~~----~d~iilv~D~~~~~Sf-~~l~~~~~~i~~~~~~-------------------  107 (211)
T cd04111          54 LQLWDTAGQERFRSITRS--YYRN----SVGVLLVFDITNRESF-EHVHDWLEEARSHIQP-------------------  107 (211)
T ss_pred             EEEEeCCcchhHHHHHHH--HhcC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            589999998665554433  1221    2368999999999988 8888898866542211                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+||||||+|+...     ...-......+|..+|...+-||+|+
T Consensus       108 --------------------------------~~~~iilvgNK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sak~  150 (211)
T cd04111         108 --------------------------------HRPVFILVGHKCDLESQ-----RQVTREEAEKLAKDLGMKYIETSART  150 (211)
T ss_pred             --------------------------------CCCeEEEEEEccccccc-----cccCHHHHHHHHHHhCCEEEEEeCCC
Confidence                                            13688999999998742     11112335667888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCcccccc
Q psy11649        553 PGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIE  597 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~  597 (890)
                      +.|++.+++.|...++..        ..+.++..+.||++.++=+
T Consensus       151 g~~v~e~f~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~  187 (211)
T cd04111         151 GDNVEEAFELLTQEIYER--------IKRGELCALDGWDGVKSGF  187 (211)
T ss_pred             CCCHHHHHHHHHHHHHHH--------hhcCCCCccccccccccCC
Confidence            999999999999988764        3455788999998876433

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=4.8e-07  Score=104.57  Aligned_cols=153  Identities=12%  Similarity=0.079  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .=|.++|----|||||+..+-+..-      .+-..+| .|.  -..... ....+.+.||||++.|..+..-=  . - 
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIG-A~~--v~~~~~-~~~~itFiDTPGHeAFt~mRaRG--a-~-   77 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG-AYQ--VPLDVI-KIPGITFIDTPGHEAFTAMRARG--A-S-   77 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEee-eEE--EEeccC-CCceEEEEcCCcHHHHHHHHhcC--C-c-
Confidence            3489999999999999999876321      1112222 111  111100 12279999999999887776433  0 1 


Q ss_pred             cccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        110 AQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       110 ~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                        =+|++|+|+|+.+   |.+.        +.+..                             ....++|++|+.||+|
T Consensus        78 --vtDIaILVVa~dDGv~pQTi--------EAI~h-----------------------------ak~a~vP~iVAiNKiD  118 (509)
T COG0532          78 --VTDIAILVVAADDGVMPQTI--------EAINH-----------------------------AKAAGVPIVVAINKID  118 (509)
T ss_pred             --cccEEEEEEEccCCcchhHH--------HHHHH-----------------------------HHHCCCCEEEEEeccc
Confidence              2799999999988   4333        11111                             1234799999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..+. +++.-....++.--.+..+|  ..++++||++|.|+++|.++|.-..
T Consensus       119 k~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         119 KPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             CCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence            9632 22221111111122334454  5699999999999999988886543

>PLN03110 Rab GTPase; Provisional

Probab=98.59  E-value=1.3e-07  Score=99.34  Aligned_cols=114  Identities=17%  Similarity=0.289  Sum_probs=87.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+..|+..+..+...  .+.    ....+++|+|++.+.++ +.++.|+..++.+..                    
T Consensus        63 l~l~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  115 (216)
T PLN03110         63 AQIWDTAGQERYRAITSA--YYR----GAVGALLVYDITKRQTF-DNVQRWLRELRDHAD--------------------  115 (216)
T ss_pred             EEEEECCCcHHHHHHHHH--HhC----CCCEEEEEEECCChHHH-HHHHHHHHHHHHhCC--------------------
Confidence            489999999766665444  222    23479999999999987 899999887765321                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+||||||+|+...     .+.-...++.++..+|...+.||++.
T Consensus       116 --------------------------------~~~piiiv~nK~Dl~~~-----~~~~~~~~~~l~~~~~~~~~e~SA~~  158 (216)
T PLN03110        116 --------------------------------SNIVIMMAGNKSDLNHL-----RSVAEEDGQALAEKEGLSFLETSALE  158 (216)
T ss_pred             --------------------------------CCCeEEEEEEChhcccc-----cCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            14899999999998532     11222335677888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCC
Q psy11649        553 PGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~  570 (890)
                      +.|++.+++.|...++..
T Consensus       159 g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        159 ATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999999874

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.59  E-value=1.6e-07  Score=100.22  Aligned_cols=118  Identities=20%  Similarity=0.241  Sum_probs=85.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ++||+..|+..+..+...  .+.    ....+|+|+|+|.+.++-+.+..|+..++.+..                    
T Consensus        63 l~iwDTaG~e~~~~~~~~--~~~----~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~--------------------  116 (232)
T cd04174          63 LSLWDTSGSPYYDNVRPL--CYS----DSDAVLLCFDISRPETVDSALKKWKAEIMDYCP--------------------  116 (232)
T ss_pred             EEEEeCCCchhhHHHHHH--HcC----CCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC--------------------
Confidence            589999999766654443  122    233799999999999994446899877654210                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh------h-HHHHHHHHHHHHHHHcCC-c
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP------N-KKRIAVQCLRYLAHVNGA-S  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~------E-~~d~Iq~~lR~fcl~yGA-s  544 (890)
                                                       ++|+||||||+|+-.+...      . +...-......||.++|+ .
T Consensus       117 ---------------------------------~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~  163 (232)
T cd04174         117 ---------------------------------STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV  163 (232)
T ss_pred             ---------------------------------CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence                                             2689999999998542211      1 112334578999999999 5


Q ss_pred             eeEeccCChh-hHHHHHHHHhhhhcC
Q psy11649        545 LLFHSSLDPG-LVKRTRDILNHYAFS  569 (890)
Q Consensus       545 L~ftS~K~~~-n~~~l~kyi~hr~fg  569 (890)
                      .|.||+|.+. |++.++..+.-.++.
T Consensus       164 ~~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         164 YLECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             EEEccCCcCCcCHHHHHHHHHHHHHH
Confidence            8889999997 899999998876653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=98.58  E-value=1.6e-07  Score=93.17  Aligned_cols=112  Identities=14%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+.+-  .+.    ...++++|+|++.+.++ +.+..|+..++....                    
T Consensus        53 ~~i~D~~G~~~~~~~~~~--~~~----~~~~ii~v~d~~~~~s~-~~l~~~~~~~~~~~~--------------------  105 (166)
T cd01869          53 LQIWDTAGQERFRTITSS--YYR----GAHGIIIVYDVTDQESF-NNVKQWLQEIDRYAS--------------------  105 (166)
T ss_pred             EEEEECCCcHhHHHHHHH--HhC----cCCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC--------------------
Confidence            479999998665554443  122    23489999999999987 888889887754211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+||||||+|+...-     ....+.++.+|..+|...+.+|++.
T Consensus       106 --------------------------------~~~~~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  148 (166)
T cd01869         106 --------------------------------ENVNKLLVGNKCDLTDKR-----VVDYSEAQEFADELGIPFLETSAKN  148 (166)
T ss_pred             --------------------------------CCCcEEEEEEChhccccc-----CCCHHHHHHHHHHcCCeEEEEECCC
Confidence                                            037899999999986321     1223456778889999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|...++
T Consensus       149 ~~~v~~~~~~i~~~~~  164 (166)
T cd01869         149 ATNVEQAFMTMAREIK  164 (166)
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999988775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PRK09866 hypothetical protein; Provisional

Probab=98.58  E-value=1.2e-06  Score=103.55  Aligned_cols=116  Identities=16%  Similarity=0.168  Sum_probs=68.0

Q ss_pred             EEEEEEcCCCcch-hh-HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccc
Q psy11649         84 ICHLWELGSGTSR-LE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  161 (890)
Q Consensus        84 ~l~IwDlpG~~~~-~~-Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~  161 (890)
                      ++-+.||||...- .. +...... .+.  .+|+|++|+|.++..+.  .-....+.+++.                   
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~e-qL~--eADvVLFVVDat~~~s~--~DeeIlk~Lkk~-------------------  286 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQ-QLA--RASAVLAVLDYTQLKSI--SDEEVREAILAV-------------------  286 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHH-HHh--hCCEEEEEEeCCCCCCh--hHHHHHHHHHhc-------------------
Confidence            6788999998542 12 2221111 122  59999999999886553  212222222210                   


Q ss_pred             cccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHH-HHHc--CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        162 ADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVN--GASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       162 ~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~l-a~~~--Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                                 +...|+++|+||+|+.+..+ +....+...++.. ....  ...++++||+.|.|++.+++.|...
T Consensus       287 -----------~K~~PVILVVNKIDl~dree-ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        287 -----------GQSVPLYVLVNKFDQQDRNS-DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             -----------CCCCCEEEEEEcccCCCccc-chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence                       01259999999999853211 1122222222222 1111  2359999999999999999998774

>PTZ00099 rab6; Provisional

Probab=98.57  E-value=4.4e-07  Score=92.66  Aligned_cols=112  Identities=12%  Similarity=0.053  Sum_probs=83.4

Q ss_pred             EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH  473 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~  473 (890)
                      .||+.+|+..+..+...  .+.    ..-++|+|+|+|++.++ +.+..|+..+..+..                     
T Consensus        32 ~iwDt~G~e~~~~~~~~--~~~----~ad~~ilv~D~t~~~sf-~~~~~w~~~i~~~~~---------------------   83 (176)
T PTZ00099         32 QLWDTAGQERFRSLIPS--YIR----DSAAAIVVYDITNRQSF-ENTTKWIQDILNERG---------------------   83 (176)
T ss_pred             EEEECCChHHhhhccHH--HhC----CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhcC---------------------
Confidence            78999999877776665  222    23489999999999998 888888877654110                     


Q ss_pred             ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649        474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP  553 (890)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~  553 (890)
                                                     -++|+||||+|+|+...-.-.     ...+..+|..++...+-||+|.+
T Consensus        84 -------------------------------~~~piilVgNK~DL~~~~~v~-----~~e~~~~~~~~~~~~~e~SAk~g  127 (176)
T PTZ00099         84 -------------------------------KDVIIALVGNKTDLGDLRKVT-----YEEGMQKAQEYNTMFHETSAKAG  127 (176)
T ss_pred             -------------------------------CCCeEEEEEECcccccccCCC-----HHHHHHHHHHcCCEEEEEECCCC
Confidence                                           137999999999996321111     11234567788887777999999


Q ss_pred             hhHHHHHHHHhhhhcC
Q psy11649        554 GLVKRTRDILNHYAFS  569 (890)
Q Consensus       554 ~n~~~l~kyi~hr~fg  569 (890)
                      .|++.++.+|...+..
T Consensus       128 ~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        128 HNIKVLFKKIAAKLPN  143 (176)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988765

>cd04127 Rab27A Rab27a subfamily

Probab=98.56  E-value=2.1e-07  Score=93.50  Aligned_cols=113  Identities=16%  Similarity=0.250  Sum_probs=85.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+.  +  .-++++|+|+++|.++ ..++.|+..++.+...                   
T Consensus        65 ~~i~Dt~G~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  118 (180)
T cd04127          65 LQLWDTAGQERFRSLTTA--FFR--D--AMGFLLIFDLTNEQSF-LNVRNWMSQLQTHAYC-------------------  118 (180)
T ss_pred             EEEEeCCChHHHHHHHHH--HhC--C--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            489999999776666555  232  1  2379999999999998 7888998876543210                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++|||||+|+...-+     .-.+.++.+|..+|...|.+|+|.
T Consensus       119 --------------------------------~~~piiiv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127         119 --------------------------------ENPDIVLCGNKADLEDQRQ-----VSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             --------------------------------CCCcEEEEEeCccchhcCc-----cCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            0368999999999974211     112346778888999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.+++.|...++
T Consensus       162 ~~~v~~l~~~l~~~~~  177 (180)
T cd04127         162 GTNVEKAVERLLDLVM  177 (180)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988765

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04176 Rap2 Rap2 subgroup

Probab=98.54  E-value=3.8e-07  Score=90.10  Aligned_cols=113  Identities=16%  Similarity=0.199  Sum_probs=82.4

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+||+..|...+..+...  -+.    ..-.+++|+|++.+.++ +.+..|+..+.++..                   
T Consensus        50 ~l~i~Dt~G~~~~~~~~~~--~~~----~ad~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  103 (163)
T cd04176          50 VLEILDTAGTEQFASMRDL--YIK----NGQGFIVVYSLVNQQTF-QDIKPMRDQIVRVKG-------------------  103 (163)
T ss_pred             EEEEEECCCcccccchHHH--HHh----hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            4579999998777666555  222    12368899999999997 888889877654211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      ..++|+||||||+|+...-.     .-......+|..+|...|.||++
T Consensus       104 --------------------------------~~~~piviv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  146 (163)
T cd04176         104 --------------------------------YEKVPIILVGNKVDLESERE-----VSSAEGRALAEEWGCPFMETSAK  146 (163)
T ss_pred             --------------------------------CCCCCEEEEEECccchhcCc-----cCHHHHHHHHHHhCCEEEEecCC
Confidence                                            01489999999999863211     11123456677789999999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.|++.+++++..++
T Consensus       147 ~~~~v~~l~~~l~~~l  162 (163)
T cd04176         147 SKTMVNELFAEIVRQM  162 (163)
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=98.54  E-value=4.4e-07  Score=88.63  Aligned_cols=111  Identities=15%  Similarity=0.184  Sum_probs=83.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+...  .+..    .-.+++|+|++.+.++ +.+..|+..+..+...                   
T Consensus        51 ~~i~Dt~G~~~~~~l~~~--~~~~----~~~~i~v~~~~~~~s~-~~~~~~~~~i~~~~~~-------------------  104 (162)
T cd04138          51 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINSRKSF-EDIHTYREQIKRVKDS-------------------  104 (162)
T ss_pred             EEEEECCCCcchHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            578999999777666554  2221    2378999999999987 7788887766543210                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...      ......++.+|..+|...+.||++.
T Consensus       105 --------------------------------~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (162)
T cd04138         105 --------------------------------DDVPMVLVGNKCDLAAR------TVSSRQGQDLAKSYGIPYIETSAKT  146 (162)
T ss_pred             --------------------------------CCCCEEEEEECcccccc------eecHHHHHHHHHHhCCeEEEecCCC
Confidence                                            14799999999998741      2334557778888899999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|...+
T Consensus       147 ~~gi~~l~~~l~~~~  161 (162)
T cd04138         147 RQGVEEAFYTLVREI  161 (162)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.54  E-value=3e-07  Score=92.90  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=86.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+.+|+..+..+...  .+..    .-++|+|+|++.+.++ +.+..|...++....                   
T Consensus        51 ~l~i~Dt~G~~~~~~l~~~--~~~~----~d~~ilv~d~~~~~Sf-~~~~~~~~~i~~~~~-------------------  104 (172)
T cd04141          51 LLDILDTAGQAEFTAMRDQ--YMRC----GEGFIICYSVTDRHSF-QEASEFKKLITRVRL-------------------  104 (172)
T ss_pred             EEEEEeCCCchhhHHHhHH--Hhhc----CCEEEEEEECCchhHH-HHHHHHHHHHHHhcC-------------------
Confidence            4589999999776665554  2332    2379999999999998 888888776644210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      .-++|+||||||+|+...-     ..-....+.+|..+|+..+.||++
T Consensus       105 --------------------------------~~~~piilvgNK~Dl~~~~-----~v~~~~~~~~a~~~~~~~~e~Sa~  147 (172)
T cd04141         105 --------------------------------TEDIPLVLVGNKVDLESQR-----QVTTEEGRNLAREFNCPFFETSAA  147 (172)
T ss_pred             --------------------------------CCCCCEEEEEEChhhhhcC-----ccCHHHHHHHHHHhCCEEEEEecC
Confidence                                            0138999999999986421     112234567788899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      ++.|++.++..|...+..
T Consensus       148 ~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         148 LRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988775

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04126 Rab20 Rab20 subfamily

Probab=98.54  E-value=1.9e-07  Score=98.88  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=89.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..||+..|+..+..+...  -+.    ...++|+|+|++.+.++ +.++.|...+..+.                     
T Consensus        46 l~iwDt~G~e~~~~l~~~--~~~----~ad~~IlV~Dvt~~~Sf-~~l~~~~~~l~~~~---------------------   97 (220)
T cd04126          46 ISIWDTAGREQFHGLGSM--YCR----GAAAVILTYDVSNVQSL-EELEDRFLGLTDTA---------------------   97 (220)
T ss_pred             EEEEeCCCcccchhhHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc---------------------
Confidence            589999999877766555  222    23489999999999998 77777765543210                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh--------------hHHHHHHHHHHHHH
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP--------------NKKRIAVQCLRYLA  538 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~--------------E~~d~Iq~~lR~fc  538 (890)
                                                     +-++|+||||||+|+..+...              .+...-......+|
T Consensus        98 -------------------------------~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a  146 (220)
T cd04126          98 -------------------------------NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY  146 (220)
T ss_pred             -------------------------------CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHH
Confidence                                           013789999999999742111              12333445677788


Q ss_pred             HHcC--------------CceeEeccCChhhHHHHHHHHhhhhcCCCCCc
Q psy11649        539 HVNG--------------ASLLFHSSLDPGLVKRTRDILNHYAFSSHLAS  574 (890)
Q Consensus       539 l~yG--------------AsL~ftS~K~~~n~~~l~kyi~hr~fg~~~~~  574 (890)
                      .++|              +..|.||+|++.|++.++..+...++.+...+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~  196 (220)
T cd04126         147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQ  196 (220)
T ss_pred             HHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            8877              57899999999999999999999998765543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.54  E-value=3.1e-07  Score=92.56  Aligned_cols=119  Identities=20%  Similarity=0.178  Sum_probs=88.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+.    ...++++|+|.+.+.++ +.+++|+..+.++...                   
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~ad~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  104 (170)
T cd04108          51 LQLWDTAGQERFKCIAST--YYR----GAQAIIIVFDLTDVASL-EHTRQWLEDALKENDP-------------------  104 (170)
T ss_pred             EEEEeCCChHHHHhhHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            689999999665554443  122    23479999999999888 7888888877543210                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      --+|+++||||+|+...-+   ...+.+.++.+|.++++..+.||++.
T Consensus       105 --------------------------------~~~~iilVgnK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~  149 (170)
T cd04108         105 --------------------------------SSVLLFLVGTKKDLSSPAQ---YALMEQDAIKLAAEMQAEYWSVSALS  149 (170)
T ss_pred             --------------------------------CCCeEEEEEEChhcCcccc---ccccHHHHHHHHHHcCCeEEEEECCC
Confidence                                            0158999999999853211   12245567788889999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSHL  572 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~~  572 (890)
                      +.|++.+++.|...++.+++
T Consensus       150 g~~v~~lf~~l~~~~~~~~~  169 (170)
T cd04108         150 GENVREFFFRVAALTFELGC  169 (170)
T ss_pred             CCCHHHHHHHHHHHHHHccC
Confidence            99999999999999988765

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01865 Rab3 Rab3 subfamily

Probab=98.53  E-value=2.8e-07  Score=91.66  Aligned_cols=113  Identities=16%  Similarity=0.232  Sum_probs=81.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|...+..+...  .+.    ....+++|+|++.+.++ +.++.|++.++.+..                    
T Consensus        52 ~~l~Dt~g~~~~~~~~~~--~~~----~~~~~l~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  104 (165)
T cd01865          52 LQIWDTAGQERYRTITTA--YYR----GAMGFILMYDITNEESF-NAVQDWSTQIKTYSW--------------------  104 (165)
T ss_pred             EEEEECCChHHHHHHHHH--Hcc----CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            489999998665544333  111    23378999999999887 788999876643110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|++|||||+|+...-.     ......+.++..+|...+.+|+|.
T Consensus       105 --------------------------------~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~  147 (165)
T cd01865         105 --------------------------------DNAQVILVGNKCDMEDERV-----VSSERGRQLADQLGFEFFEASAKE  147 (165)
T ss_pred             --------------------------------CCCCEEEEEECcccCcccc-----cCHHHHHHHHHHcCCEEEEEECCC
Confidence                                            0268999999999963211     112234556778899999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.+++.|...+++
T Consensus       148 ~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         148 NINVKQVFERLVDIICD  164 (165)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999887764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.53  E-value=3.1e-07  Score=98.79  Aligned_cols=84  Identities=20%  Similarity=0.214  Sum_probs=65.8

Q ss_pred             cCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      ++|++++|+|+++|. ++ +.+.+|+..+..                                .++|++||+||+|+.. 
T Consensus        36 n~D~viiV~d~~~p~~s~-~~l~r~l~~~~~--------------------------------~~i~~vIV~NK~DL~~-   81 (245)
T TIGR00157        36 NIDQIVIVSSAVLPELSL-NQLDRFLVVAEA--------------------------------QNIEPIIVLNKIDLLD-   81 (245)
T ss_pred             cCCEEEEEEECCCCCCCH-HHHHHHHHHHHH--------------------------------CCCCEEEEEECcccCC-
Confidence            699999999999988 66 888999864432                                2689999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                          .+....+.++.++ .+|..++++||+++.|++++++.+..
T Consensus        82 ----~~~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        82 ----DEDMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             ----CHHHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHhhhcC
Confidence                3333334555554 47899999999999999999887754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.53  E-value=4.3e-07  Score=95.75  Aligned_cols=112  Identities=12%  Similarity=0.113  Sum_probs=83.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+.+|+..+..+.+.  -..    ...++|+|+|++.+.++ +.++.|+..++++..                   
T Consensus        63 ~l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilvfD~~~~~s~-~~i~~w~~~i~~~~~-------------------  116 (219)
T PLN03071         63 RFYCWDTAGQEKFGGLRDG--YYI----HGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCE-------------------  116 (219)
T ss_pred             EEEEEECCCchhhhhhhHH--Hcc----cccEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            4489999999766554443  112    22378999999999998 888999887764210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        ++|+||||||+|+......+      ..+ .++..++...|.||+|
T Consensus       117 ----------------------------------~~piilvgNK~Dl~~~~v~~------~~~-~~~~~~~~~~~e~SAk  155 (219)
T PLN03071        117 ----------------------------------NIPIVLCGNKVDVKNRQVKA------KQV-TFHRKKNLQYYEISAK  155 (219)
T ss_pred             ----------------------------------CCcEEEEEEchhhhhccCCH------HHH-HHHHhcCCEEEEcCCC
Confidence                                              37999999999986321111      123 5677788899999999


Q ss_pred             ChhhHHHHHHHHhhhhcCC
Q psy11649        552 DPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~  570 (890)
                      .+.|++.++.+|..+++..
T Consensus       156 ~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        156 SNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999764

>cd01875 RhoG RhoG subfamily

Probab=98.52  E-value=6.5e-07  Score=92.03  Aligned_cols=117  Identities=21%  Similarity=0.232  Sum_probs=84.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .+||+.+|+..+..+-+.  -..    ..-++|+|+|++.|.++ +.++ .|...++.+.                    
T Consensus        53 l~i~Dt~G~e~~~~l~~~--~~~----~a~~~ilvydit~~~Sf-~~~~~~w~~~i~~~~--------------------  105 (191)
T cd01875          53 LNLWDTAGQEEYDRLRTL--SYP----QTNVFIICFSIASPSSY-ENVRHKWHPEVCHHC--------------------  105 (191)
T ss_pred             EEEEECCCchhhhhhhhh--hcc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence            489999999777765444  122    22378999999999998 7775 6876554310                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-hH-H-----HHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-NK-K-----RIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E~-~-----d~Iq~~lR~fcl~yGA-  543 (890)
                                                       -.+|+||||||+|+-..-+. +. .     ..-.+..+.+|..+|+ 
T Consensus       106 ---------------------------------~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~  152 (191)
T cd01875         106 ---------------------------------PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV  152 (191)
T ss_pred             ---------------------------------CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence                                             03799999999998632110 00 0     0123467889999996 


Q ss_pred             ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ..|-||+|++.|++.++..+...+..
T Consensus       153 ~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         153 KYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence            78999999999999999999988865

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04117 Rab15 Rab15 subfamily

Probab=98.52  E-value=3.5e-07  Score=91.02  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=80.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+..|+..+..+...  ...    ..-++++|+|++.+.++ +.+.+|++.++.+..                    
T Consensus        51 l~i~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~sf-~~~~~~~~~~~~~~~--------------------  103 (161)
T cd04117          51 IQIWDTAGQERYQTITKQ--YYR----RAQGIFLVYDISSERSY-QHIMKWVSDVDEYAP--------------------  103 (161)
T ss_pred             EEEEeCCCcHhHHhhHHH--Hhc----CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            479999998766665544  121    22378999999999988 888999876654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+++||||+|+...     +....+..+.+|..++...+-||+|.
T Consensus       104 --------------------------------~~~~iilvgnK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sa~~  146 (161)
T cd04117         104 --------------------------------EGVQKILIGNKADEEQK-----RQVGDEQGNKLAKEYGMDFFETSACT  146 (161)
T ss_pred             --------------------------------CCCeEEEEEECcccccc-----cCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            03789999999998632     11223456667788899999999999


Q ss_pred             hhhHHHHHHHHhh
Q psy11649        553 PGLVKRTRDILNH  565 (890)
Q Consensus       553 ~~n~~~l~kyi~h  565 (890)
                      +.|++.++..|.-
T Consensus       147 ~~~v~~~f~~l~~  159 (161)
T cd04117         147 NSNIKESFTRLTE  159 (161)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01863 Rab18 Rab18 subfamily

Probab=98.52  E-value=5e-07  Score=88.91  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=83.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+...  .+.    ...++++|+|++.|.++ +.+..|+..++.+...                   
T Consensus        51 ~~l~D~~g~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  104 (161)
T cd01863          51 LAIWDTAGQERFRTLTSS--YYR----GAQGVILVYDVTRRDTF-TNLETWLNELETYSTN-------------------  104 (161)
T ss_pred             EEEEECCCchhhhhhhHH--HhC----CCCEEEEEEECCCHHHH-HhHHHHHHHHHHhCCC-------------------
Confidence            589999998665554443  122    23479999999999997 7888898877664321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc-cCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~-~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      -++|++|||||+|+. .....       ...+.+|..+++..+.+|++
T Consensus       105 --------------------------------~~~~~~iv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~~~~Sa~  145 (161)
T cd01863         105 --------------------------------NDIVKMLVGNKIDKENREVTR-------EEGLKFARKHNMLFIETSAK  145 (161)
T ss_pred             --------------------------------CCCcEEEEEECCcccccccCH-------HHHHHHHHHcCCEEEEEecC
Confidence                                            147899999999997 22222       23566788899999999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.+++.+.+.+..++
T Consensus       146 ~~~gi~~~~~~~~~~~  161 (161)
T cd01863         146 TRDGVQQAFEELVEKI  161 (161)
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999988763

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04124 RabL2 RabL2 subfamily

Probab=98.50  E-value=7.8e-07  Score=88.38  Aligned_cols=108  Identities=16%  Similarity=0.199  Sum_probs=81.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+..    .-++++|+|++++.++ +.++.|+..++...                     
T Consensus        51 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~---------------------  102 (161)
T cd04124          51 VDFWDTAGQERFQTMHAS--YYHK----AHACILVFDVTRKITY-KNLSKWYEELREYR---------------------  102 (161)
T ss_pred             EEEEeCCCchhhhhhhHH--HhCC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhC---------------------
Confidence            489999999776665554  2222    2379999999999988 88899988775410                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|++||+||+|+-..        .......+|..++...+.+|+|.
T Consensus       103 --------------------------------~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~~~~~~~~~~Sa~~  142 (161)
T cd04124         103 --------------------------------PEIPCIVVANKIDLDPS--------VTQKKFNFAEKHNLPLYYVSAAD  142 (161)
T ss_pred             --------------------------------CCCcEEEEEECccCchh--------HHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            02789999999998421        12234467888899999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.+++.+.-.+.
T Consensus       143 ~~gv~~l~~~l~~~~~  158 (161)
T cd04124         143 GTNVVKLFQDAIKLAV  158 (161)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999998876553

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.49  E-value=5.8e-07  Score=90.09  Aligned_cols=113  Identities=10%  Similarity=0.113  Sum_probs=83.5

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+..|+.....+...  .+    ...-++|+|+|++.+.++ +.++.|++.++.+..                   
T Consensus        50 ~l~i~Dt~G~~~~~~~~~~--~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  103 (166)
T cd00877          50 RFNVWDTAGQEKFGGLRDG--YY----IGGQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCG-------------------  103 (166)
T ss_pred             EEEEEECCCChhhccccHH--Hh----cCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            3489999998655544333  11    123478999999999998 888999877665211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        .+|+||||||+|+....       +......+|..++...|-||+|
T Consensus       104 ----------------------------------~~piiiv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~e~Sa~  142 (166)
T cd00877         104 ----------------------------------NIPIVLCGNKVDIKDRK-------VKAKQITFHRKKNLQYYEISAK  142 (166)
T ss_pred             ----------------------------------CCcEEEEEEchhccccc-------CCHHHHHHHHHcCCEEEEEeCC
Confidence                                              37999999999996211       1112234677788899999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCC
Q psy11649        552 DPGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~~  571 (890)
                      .+.|++.++.+|.-.+++.|
T Consensus       143 ~~~~v~~~f~~l~~~~~~~~  162 (166)
T cd00877         143 SNYNFEKPFLWLARKLLGNP  162 (166)
T ss_pred             CCCChHHHHHHHHHHHHhcc
Confidence            99999999999998887643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04140 ARHI_like ARHI subfamily

Probab=98.49  E-value=7e-07  Score=88.87  Aligned_cols=112  Identities=16%  Similarity=0.161  Sum_probs=82.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+.    ..-.+|+|+|++.+.++ +.++.|+..++.+...                   
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  104 (165)
T cd04140          51 LQITDTTGSHQFPAMQRL--SIS----KGHAFILVYSVTSKQSL-EELKPIYELICEIKGN-------------------  104 (165)
T ss_pred             EEEEECCCCCcchHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC-------------------
Confidence            589999999776655443  222    12378999999999987 8889998888764321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                              .                      .-.+|++|||||+|+...     ..........+|..+++..|.||+|.
T Consensus       105 --------~----------------------~~~~piilv~nK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~SA~~  149 (165)
T cd04140         105 --------N----------------------IEKIPIMLVGNKCDESHK-----REVSSNEGAACATEWNCAFMETSAKT  149 (165)
T ss_pred             --------C----------------------CCCCCEEEEEECcccccc-----CeecHHHHHHHHHHhCCcEEEeecCC
Confidence                    0                      014899999999999641     11223345667888999999999999


Q ss_pred             hhhHHHHHHHHhh
Q psy11649        553 PGLVKRTRDILNH  565 (890)
Q Consensus       553 ~~n~~~l~kyi~h  565 (890)
                      +.|++.++..|.-
T Consensus       150 g~~v~~~f~~l~~  162 (165)
T cd04140         150 NHNVQELFQELLN  162 (165)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988763

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG0077|consensus

Probab=98.48  E-value=5.1e-07  Score=90.00  Aligned_cols=115  Identities=19%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC-CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK-NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~-~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .-|++++|-.|+|||||++.|.+. -..+.||.--.     .......+.++..+|++|...-+..+..|      ...+
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT-----SE~l~Ig~m~ftt~DLGGH~qArr~wkdy------f~~v   88 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT-----SEELSIGGMTFTTFDLGGHLQARRVWKDY------FPQV   88 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccCCCcCCC-----hHHheecCceEEEEccccHHHHHHHHHHH------Hhhh
Confidence            348999999999999999999874 34444554321     00111223379999999987666777666      1248


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                      +++++.+|+-+.++|        ++.+++.+.++..                     .....+|+++.+||+|...
T Consensus        89 ~~iv~lvda~d~er~--------~es~~eld~ll~~---------------------e~la~vp~lilgnKId~p~  135 (193)
T KOG0077|consen   89 DAIVYLVDAYDQERF--------AESKKELDALLSD---------------------ESLATVPFLILGNKIDIPY  135 (193)
T ss_pred             ceeEeeeehhhHHHh--------HHHHHHHHHHHhH---------------------HHHhcCcceeecccccCCC
Confidence            999999999999998        4444444443321                     1112589999999999853

>cd01864 Rab19 Rab19 subfamily

Probab=98.48  E-value=4.3e-07  Score=90.12  Aligned_cols=110  Identities=19%  Similarity=0.247  Sum_probs=81.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+...  .+.    ..-++++|+|+++|.++ +.++.|+..+..+..                    
T Consensus        54 l~i~D~~G~~~~~~~~~~--~~~----~~d~~llv~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  106 (165)
T cd01864          54 LQIWDTAGQERFRTITQS--YYR----SANGAIIAYDITRRSSF-ESVPHWIEEVEKYGA--------------------  106 (165)
T ss_pred             EEEEECCChHHHHHHHHH--Hhc----cCCEEEEEEECcCHHHH-HhHHHHHHHHHHhCC--------------------
Confidence            489999998655443333  121    12378899999999997 889999998865311                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K  551 (890)
                                                      .++|++|||||+|+...-     +.....++.+|..+++ ..+.+|+|
T Consensus       107 --------------------------------~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~e~Sa~  149 (165)
T cd01864         107 --------------------------------SNVVLLLIGNKCDLEEQR-----EVLFEEACTLAEKNGMLAVLETSAK  149 (165)
T ss_pred             --------------------------------CCCcEEEEEECccccccc-----ccCHHHHHHHHHHcCCcEEEEEECC
Confidence                                            147899999999997431     2233456788888997 57999999


Q ss_pred             ChhhHHHHHHHHhhh
Q psy11649        552 DPGLVKRTRDILNHY  566 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr  566 (890)
                      ++.|++.+++-|...
T Consensus       150 ~~~~v~~~~~~l~~~  164 (165)
T cd01864         150 ESQNVEEAFLLMATE  164 (165)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999888754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=98.48  E-value=6e-07  Score=91.64  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=84.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+...  .+.    ...++++|+|++.+.++ +.+..|+..++.+ .                    
T Consensus        52 l~i~D~~G~~~~~~~~~~--~~~----~~d~iilv~d~~~~~s~-~~~~~~~~~i~~~-~--------------------  103 (193)
T cd04118          52 LGIWDTAGSERYEAMSRI--YYR----GAKAAIVCYDLTDSSSF-ERAKFWVKELQNL-E--------------------  103 (193)
T ss_pred             EEEEECCCchhhhhhhHh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHhc-C--------------------
Confidence            489999998666555443  121    23489999999999876 7778887765431 0                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++||+||+|+....+ +........++.|+..+++.++.+|++.
T Consensus       104 --------------------------------~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  150 (193)
T cd04118         104 --------------------------------EHCKIYLCGTKSDLIEQDR-SLRQVDFHDVQDFADEIKAQHFETSSKT  150 (193)
T ss_pred             --------------------------------CCCCEEEEEEccccccccc-ccCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            0378999999999874321 1122222456678889999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.+++.++..|...+..
T Consensus       151 ~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         151 GQNVDELFQKVAEDFVS  167 (193)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988865

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PRK00007 elongation factor G; Reviewed

Probab=98.47  E-value=1e-06  Score=107.94  Aligned_cols=139  Identities=13%  Similarity=0.008  Sum_probs=83.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------C--------------CCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------T--------------PKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~--------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      .-.+|+|+|.+++|||||+++|+...+      .              ...+++++........   .+.++++.||||.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~---~~~~~~liDTPG~   85 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW---KDHRINIIDTPGH   85 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE---CCeEEEEEeCCCc
Confidence            457999999999999999999974111      0              1233444322222221   2348999999998


Q ss_pred             cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      ..|..-+...    +.  .+|++|+|+|.+....- .....|.. +                                ..
T Consensus        86 ~~f~~ev~~a----l~--~~D~~vlVvda~~g~~~-qt~~~~~~-~--------------------------------~~  125 (693)
T PRK00007         86 VDFTIEVERS----LR--VLDGAVAVFDAVGGVEP-QSETVWRQ-A--------------------------------DK  125 (693)
T ss_pred             HHHHHHHHHH----HH--HcCEEEEEEECCCCcch-hhHHHHHH-H--------------------------------HH
Confidence            7653322211    11  38999999998875443 22222221 1                                12


Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC----eEEEEeccCC
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA----SLLFHSSLDP  222 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga----~l~etSAK~~  222 (890)
                      .++|+++++||+|+...    .   ....+.++...++.    ..+++|+..+
T Consensus       126 ~~~p~iv~vNK~D~~~~----~---~~~~~~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        126 YKVPRIAFVNKMDRTGA----D---FYRVVEQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             cCCCEEEEEECCCCCCC----C---HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence            36899999999998631    1   22334444444443    3677888765

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.47  E-value=4.8e-07  Score=91.76  Aligned_cols=117  Identities=18%  Similarity=0.237  Sum_probs=84.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .++|+..|+..+..+...  .+.    ..-++++|+|++.+.++ +.+ +.|+..++.+.                    
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~ad~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  103 (187)
T cd04132          51 LALWDTAGQEEYDRLRPL--SYP----DVDVLLICYAVDNPTSL-DNVEDKWFPEVNHFC--------------------  103 (187)
T ss_pred             EEEEECCCchhHHHHHHH--hCC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence            479999998766655443  122    23378999999999988 555 46876543210                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~  550 (890)
                                                       -++|+||||||+|+....+.+ .......++.+|..+|+ ..|.||+
T Consensus       104 ---------------------------------~~~piilv~nK~Dl~~~~~~~-~~v~~~~~~~~~~~~~~~~~~e~Sa  149 (187)
T cd04132         104 ---------------------------------PGTPIMLVGLKTDLRKDKNLD-RKVTPAQAESVAKKQGAFAYLECSA  149 (187)
T ss_pred             ---------------------------------CCCCEEEEEeChhhhhCcccc-CCcCHHHHHHHHHHcCCcEEEEccC
Confidence                                             037999999999997543211 12334567788999999 8999999


Q ss_pred             CChhhHHHHHHHHhhhhcCC
Q psy11649        551 LDPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~fg~  570 (890)
                      +.+.|++.++..+...+...
T Consensus       150 ~~~~~v~~~f~~l~~~~~~~  169 (187)
T cd04132         150 KTMENVEEVFDTAIEEALKK  169 (187)
T ss_pred             CCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999888753

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=98.47  E-value=6e-07  Score=91.98  Aligned_cols=115  Identities=14%  Similarity=0.157  Sum_probs=85.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|+..+..+...  .+..    .-++|+|+|++.+.++ ++++.|++.++.+...                   
T Consensus        49 l~i~Dt~G~~~~~~~~~~--~~~~----ad~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  102 (190)
T cd04144          49 LEVLDTAGQEEYTALRDQ--WIRE----GEGFILVYSITSRSTF-ERVERFREQIQRVKDE-------------------  102 (190)
T ss_pred             EEEEECCCchhhHHHHHH--HHHh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcc-------------------
Confidence            578999998666655443  2222    2378999999999998 8999999888764321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                    .+-.+|+||||||+|+..+-     .........++..+|+..|-+|+|.
T Consensus       103 ------------------------------~~~~~piilvgNK~Dl~~~~-----~v~~~~~~~~~~~~~~~~~e~SAk~  147 (190)
T cd04144         103 ------------------------------SAADVPIMIVGNKCDKVYER-----EVSTEEGAALARRLGCEFIEASAKT  147 (190)
T ss_pred             ------------------------------cCCCCCEEEEEEChhccccC-----ccCHHHHHHHHHHhCCEEEEecCCC
Confidence                                          00147999999999986321     1122335667888999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|..++.
T Consensus       148 ~~~v~~l~~~l~~~l~  163 (190)
T cd04144         148 NVNVERAFYTLVRALR  163 (190)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988776

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=98.47  E-value=7.1e-07  Score=87.75  Aligned_cols=108  Identities=18%  Similarity=0.196  Sum_probs=80.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+.    ..-.+++|+|++.|.++ +.+..|+..++....                    
T Consensus        53 ~~i~D~~G~~~~~~~~~~--~~~----~~~~~v~v~d~~~~~s~-~~l~~~~~~~~~~~~--------------------  105 (162)
T cd04106          53 LMLWDTAGQEEFDAITKA--YYR----GAQACILVFSTTDRESF-EAIESWKEKVEAECG--------------------  105 (162)
T ss_pred             EEEeeCCchHHHHHhHHH--Hhc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            489999998666655443  222    12378999999999987 888999887653110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       ++|+|||+||.|+..+-+-.     .+.+..+|..+|...|.+|+++
T Consensus       106 ---------------------------------~~p~iiv~nK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~~Sa~~  147 (162)
T cd04106         106 ---------------------------------DIPMVLVQTKIDLLDQAVIT-----NEEAEALAKRLQLPLFRTSVKD  147 (162)
T ss_pred             ---------------------------------CCCEEEEEEChhcccccCCC-----HHHHHHHHHHcCCeEEEEECCC
Confidence                                             37899999999997432111     1335677888999999999999


Q ss_pred             hhhHHHHHHHHhh
Q psy11649        553 PGLVKRTRDILNH  565 (890)
Q Consensus       553 ~~n~~~l~kyi~h  565 (890)
                      +.|++.++++|..
T Consensus       148 ~~~v~~l~~~l~~  160 (162)
T cd04106         148 DFNVTELFEYLAE  160 (162)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999999864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04125 RabA_like RabA-like subfamily

Probab=98.47  E-value=5.4e-07  Score=91.83  Aligned_cols=113  Identities=11%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|...+..+...  .+.    ...++|+|+|.+.+.++ +.+..|+..++.+...                   
T Consensus        51 ~~i~Dt~g~~~~~~~~~~--~~~----~~d~iilv~d~~~~~s~-~~i~~~~~~i~~~~~~-------------------  104 (188)
T cd04125          51 LQIWDTNGQERFRSLNNS--YYR----GAHGYLLVYDVTDQESF-ENLKFWINEINRYARE-------------------  104 (188)
T ss_pred             EEEEECCCcHHHHhhHHH--Hcc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCCC-------------------
Confidence            479999998666554444  222    23389999999999987 8888898877642110                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       .+|+||||||+|+...-.     .-....+.+|..+|+..+.+|++.
T Consensus       105 ---------------------------------~~~~ivv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~evSa~~  146 (188)
T cd04125         105 ---------------------------------NVIKVIVANKSDLVNNKV-----VDSNIAKSFCDSLNIPFFETSAKQ  146 (188)
T ss_pred             ---------------------------------CCeEEEEEECCCCccccc-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                             268999999999873211     112344567778899999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|.+.++.
T Consensus       147 ~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         147 SINVEEAFILLVKLIIK  163 (188)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998874

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=98.47  E-value=5.3e-07  Score=93.24  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=85.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+++|+..+..+...  .+..    ..++|+|+|++.+.++ +.+..|+..++.+..                    
T Consensus        57 l~l~D~~G~~~~~~~~~~--~~~~----a~~iilv~D~~~~~s~-~~~~~~~~~i~~~~~--------------------  109 (199)
T cd04110          57 LQIWDTAGQERFRTITST--YYRG----THGVIVVYDVTNGESF-VNVKRWLQEIEQNCD--------------------  109 (199)
T ss_pred             EEEEeCCCchhHHHHHHH--HhCC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            579999998666655444  1221    2379999999999987 888889887654111                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       .+|++|||||+|+.....     .....++.+|..+|...|-+|++.
T Consensus       110 ---------------------------------~~piivVgNK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~~  151 (199)
T cd04110         110 ---------------------------------DVCKVLVGNKNDDPERKV-----VETEDAYKFAGQMGISLFETSAKE  151 (199)
T ss_pred             ---------------------------------CCCEEEEEECcccccccc-----cCHHHHHHHHHHcCCEEEEEECCC
Confidence                                             268899999999864211     113456677788999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCC
Q psy11649        553 PGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~  570 (890)
                      +.|++.++++|...+...
T Consensus       152 ~~gi~~lf~~l~~~~~~~  169 (199)
T cd04110         152 NINVEEMFNCITELVLRA  169 (199)
T ss_pred             CcCHHHHHHHHHHHHHHh
Confidence            999999999999988764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04134 Rho3 Rho3 subfamily

Probab=98.46  E-value=8.7e-07  Score=90.80  Aligned_cols=117  Identities=21%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .+||+..|+..+..+-..  ...    ..-++|+|+|++.+.++ +.++ .|+..++.+.                    
T Consensus        50 l~i~Dt~G~~~~~~l~~~--~~~----~a~~~ilv~dv~~~~sf-~~~~~~~~~~i~~~~--------------------  102 (189)
T cd04134          50 LSLWDTAGQEEFDRLRSL--SYA----DTDVIMLCFSVDSPDSL-ENVESKWLGEIREHC--------------------  102 (189)
T ss_pred             EEEEECCCChhccccccc--ccc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence            489999999666554333  111    12378999999999998 6665 6887665310                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHH-------HHHHHHHHHHHHHcC-C
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKK-------RIAVQCLRYLAHVNG-A  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~-------d~Iq~~lR~fcl~yG-A  543 (890)
                                                       -++|+||||||+|+....+.+..       ..-....+.+|..+| +
T Consensus       103 ---------------------------------~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  149 (189)
T cd04134         103 ---------------------------------PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL  149 (189)
T ss_pred             ---------------------------------CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence                                             03799999999999754322211       011234567888888 5


Q ss_pred             ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ..|.||+|++.|++.++..|.-.+.+
T Consensus       150 ~~~e~SAk~~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         150 RYLECSAKLNRGVNEAFTEAARVALN  175 (189)
T ss_pred             EEEEccCCcCCCHHHHHHHHHHHHhc
Confidence            68899999999999999999988875

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=98.46  E-value=9.1e-07  Score=86.94  Aligned_cols=111  Identities=16%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  -+.    ....+++|+|++.+.++ +.++.|+..+..+...                   
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  104 (163)
T cd04136          51 LEILDTAGTEQFTAMRDL--YIK----NGQGFVLVYSITSQSSF-NDLQDLREQILRVKDT-------------------  104 (163)
T ss_pred             EEEEECCCccccchHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            479999999776665554  122    23378999999999998 8888898877653210                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+..+-     ...++....++..+|...|.+|++.
T Consensus       105 --------------------------------~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (163)
T cd04136         105 --------------------------------ENVPMVLVGNKCDLEDER-----VVSREEGQALARQWGCPFYETSAKS  147 (163)
T ss_pred             --------------------------------CCCCEEEEEECccccccc-----eecHHHHHHHHHHcCCeEEEecCCC
Confidence                                            147999999999986321     1122335567778888899999999


Q ss_pred             hhhHHHHHHHHhhh
Q psy11649        553 PGLVKRTRDILNHY  566 (890)
Q Consensus       553 ~~n~~~l~kyi~hr  566 (890)
                      +.|++.++..|...
T Consensus       148 ~~~v~~l~~~l~~~  161 (163)
T cd04136         148 KINVDEVFADLVRQ  161 (163)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01873 RhoBTB RhoBTB subfamily

Probab=98.45  E-value=8e-07  Score=92.22  Aligned_cols=111  Identities=20%  Similarity=0.210  Sum_probs=78.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +++|+..|+..  .+-..  ...    ..-++|+|+|++.+.++ +.++ .|+..++.+..                   
T Consensus        68 l~iwDTaG~~~--~~~~~--~~~----~ad~iilv~d~t~~~Sf-~~~~~~w~~~i~~~~~-------------------  119 (195)
T cd01873          68 LRLWDTFGDHD--KDRRF--AYG----RSDVVLLCFSIASPNSL-RNVKTMWYPEIRHFCP-------------------  119 (195)
T ss_pred             EEEEeCCCChh--hhhcc--cCC----CCCEEEEEEECCChhHH-HHHHHHHHHHHHHhCC-------------------
Confidence            48999988742  11111  111    23379999999999998 7776 69876643110                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh--------------HHHHHHHHHHHH
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN--------------KKRIAVQCLRYL  537 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E--------------~~d~Iq~~lR~f  537 (890)
                                                        ++|+||||||+|+-..-..+              +...-....+.+
T Consensus       120 ----------------------------------~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~  165 (195)
T cd01873         120 ----------------------------------RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAV  165 (195)
T ss_pred             ----------------------------------CCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHH
Confidence                                              26899999999985321111              123335678899


Q ss_pred             HHHcCCceeEeccCChhhHHHHHHHHhh
Q psy11649        538 AHVNGASLLFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       538 cl~yGAsL~ftS~K~~~n~~~l~kyi~h  565 (890)
                      |..+|+..|.||+|.+.|++.++..+..
T Consensus       166 a~~~~~~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         166 AKELGIPYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             HHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999988764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=98.45  E-value=1e-06  Score=86.75  Aligned_cols=111  Identities=16%  Similarity=0.161  Sum_probs=82.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|...+..+...  .+..    .-.+++|+|++.+.++ +.+..|...+..+...                   
T Consensus        52 ~~i~Dt~G~~~~~~~~~~--~~~~----~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  105 (164)
T cd04145          52 LDILDTAGQEEFSAMREQ--YMRT----GEGFLLVFSVTDRGSF-EEVDKFHTQILRVKDR-------------------  105 (164)
T ss_pred             EEEEECCCCcchhHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            579999998776665544  2222    2378899999999996 8888888766553221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-     ..-.+..+.+|..+|...|.+|++.
T Consensus       106 --------------------------------~~~piiiv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  148 (164)
T cd04145         106 --------------------------------DEFPMILVGNKADLEHQR-----KVSREEGQELARKLKIPYIETSAKD  148 (164)
T ss_pred             --------------------------------CCCCEEEEeeCccccccc-----eecHHHHHHHHHHcCCcEEEeeCCC
Confidence                                            147999999999986321     1112346778888999999999999


Q ss_pred             hhhHHHHHHHHhhh
Q psy11649        553 PGLVKRTRDILNHY  566 (890)
Q Consensus       553 ~~n~~~l~kyi~hr  566 (890)
                      +.|++.++++|...
T Consensus       149 ~~~i~~l~~~l~~~  162 (164)
T cd04145         149 RLNVDKAFHDLVRV  162 (164)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04177 RSR1 RSR1 subgroup

Probab=98.44  E-value=1.1e-06  Score=87.70  Aligned_cols=113  Identities=18%  Similarity=0.161  Sum_probs=82.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|...+..+...  .+.  .  ...+++|+|++.|.++ +.++.|...+......                   
T Consensus        51 ~~i~Dt~G~~~~~~~~~~--~~~--~--~~~~vlv~~~~~~~s~-~~~~~~~~~i~~~~~~-------------------  104 (168)
T cd04177          51 LEILDTAGTEQFTAMREL--YIK--S--GQGFLLVYSVTSEASL-NELGELREQVLRIKDS-------------------  104 (168)
T ss_pred             EEEEeCCCcccchhhhHH--HHh--h--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhhCC-------------------
Confidence            379999999777665555  122  1  2367899999999988 7788888877653221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K  551 (890)
                                                      .++|+|+||||+|+...-.     ..++.+..++..+| .+++.||++
T Consensus       105 --------------------------------~~~piiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~~SA~  147 (168)
T cd04177         105 --------------------------------DNVPMVLVGNKADLEDDRQ-----VSREDGVSLSQQWGNVPFYETSAR  147 (168)
T ss_pred             --------------------------------CCCCEEEEEEChhccccCc-----cCHHHHHHHHHHcCCceEEEeeCC
Confidence                                            1479999999999863211     12223455667788 889999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.+++.|.-+++
T Consensus       148 ~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         148 KRTNVDEVFIDLVRQII  164 (168)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999987654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=98.44  E-value=7.3e-07  Score=85.95  Aligned_cols=108  Identities=17%  Similarity=0.301  Sum_probs=81.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+++|...+..+...  .+..    .-++++|+|++.|.++ +.++.|+..+.....                    
T Consensus        51 ~~l~D~~g~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~--------------------  103 (159)
T cd00154          51 LQIWDTAGQERFRSITPS--YYRG----AHGAILVYDITNRESF-ENLDKWLKELKEYAP--------------------  103 (159)
T ss_pred             EEEEecCChHHHHHHHHH--HhcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            379999999776665555  2322    2378999999998876 788888887766321                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|++||+||+|...     ........++.++..++...+++|++.
T Consensus       104 --------------------------------~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~sa~~  146 (159)
T cd00154         104 --------------------------------ENIPIILVGNKIDLED-----QRQVSTEEAQQFAKENGLLFFETSAKT  146 (159)
T ss_pred             --------------------------------CCCcEEEEEEcccccc-----cccccHHHHHHHHHHcCCeEEEEecCC
Confidence                                            1478999999999971     122334556777778999999999999


Q ss_pred             hhhHHHHHHHHh
Q psy11649        553 PGLVKRTRDILN  564 (890)
Q Consensus       553 ~~n~~~l~kyi~  564 (890)
                      +.+++.++..|.
T Consensus       147 ~~~i~~~~~~i~  158 (159)
T cd00154         147 GENVEELFQSLA  158 (159)
T ss_pred             CCCHHHHHHHHh
Confidence            999999998875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.44  E-value=1.5e-06  Score=86.76  Aligned_cols=115  Identities=20%  Similarity=0.258  Sum_probs=82.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +.+|+..|+..+..+.+.  .+.    ...++|+|+|++.+.++ +.+ +.|+..++.+.                    
T Consensus        48 ~~i~Dt~G~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~--------------------  100 (174)
T smart00174       48 LGLWDTAGQEDYDRLRPL--SYP----DTDVFLICFSVDSPASF-ENVKEKWYPEVKHFC--------------------  100 (174)
T ss_pred             EEEEECCCCcccchhchh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence            589999999766665554  222    23489999999999988 555 56887664310                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-h------HHHHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-N------KKRIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E------~~d~Iq~~lR~fcl~yGA-  543 (890)
                                                       -++|+||||||+|+..+-.. +      ....-.+....+|..+|+ 
T Consensus       101 ---------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  147 (174)
T smart00174      101 ---------------------------------PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAV  147 (174)
T ss_pred             ---------------------------------CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCc
Confidence                                             03799999999999742110 0      011234567789999998 


Q ss_pred             ceeEeccCChhhHHHHHHHHhhhh
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ..|-+|+|++.|++.++.-+...+
T Consensus       148 ~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      148 KYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHh
Confidence            788899999999999998887654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04175 Rap1 Rap1 subgroup

Probab=98.43  E-value=1.3e-06  Score=86.38  Aligned_cols=112  Identities=16%  Similarity=0.146  Sum_probs=82.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|++.|+..+..+.+.  -+.  ..  -++++|+|++.+.++ +.+++|+..+..+...                   
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~--~~--d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  104 (164)
T cd04175          51 LEILDTAGTEQFTAMRDL--YMK--NG--QGFVLVYSITAQSTF-NDLQDLREQILRVKDT-------------------  104 (164)
T ss_pred             EEEEECCCcccchhHHHH--HHh--hC--CEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            379999999777766665  122  21  278999999999998 8888888777542110                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++||+||+|+..+...+     ...+..+|.+++...+.||+|+
T Consensus       105 --------------------------------~~~piilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~~  147 (164)
T cd04175         105 --------------------------------EDVPMILVGNKCDLEDERVVG-----KEQGQNLARQWGCAFLETSAKA  147 (164)
T ss_pred             --------------------------------CCCCEEEEEECCcchhccEEc-----HHHHHHHHHHhCCEEEEeeCCC
Confidence                                            137999999999996432111     1223467778888999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|..++
T Consensus       148 ~~~v~~~~~~l~~~l  162 (164)
T cd04175         148 KINVNEIFYDLVRQI  162 (164)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.43  E-value=1e-06  Score=89.28  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=80.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .+||+.+|+..+..+-..  .+.    ..-++|+|+|++.+.++ +.+. .|+..++.+..                   
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~a~~~ilv~d~~~~~s~-~~~~~~w~~~i~~~~~-------------------  104 (175)
T cd01874          51 LGLFDTAGQEDYDRLRPL--SYP----QTDVFLVCFSVVSPSSF-ENVKEKWVPEITHHCP-------------------  104 (175)
T ss_pred             EEEEECCCccchhhhhhh--hcc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            379999999776655444  222    22389999999999998 6664 68766543100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC------hhH-HHHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE------PNK-KRIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~------~E~-~d~Iq~~lR~fcl~yGA-  543 (890)
                                                        .+|+||||||+|+..+-+      .+. +..-....+.+|..+|+ 
T Consensus       105 ----------------------------------~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~  150 (175)
T cd01874         105 ----------------------------------KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV  150 (175)
T ss_pred             ----------------------------------CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence                                              379999999999864211      000 11224567778889984 


Q ss_pred             ceeEeccCChhhHHHHHHHHhhh
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      ..|.||+|++.|++.++..+.-.
T Consensus       151 ~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         151 KYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHH
Confidence            79999999999999999887654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>TIGR00101 ureG urease accessory protein UreG

Probab=98.42  E-value=2.2e-06  Score=89.34  Aligned_cols=55  Identities=16%  Similarity=0.201  Sum_probs=40.8

Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+||+|+.... ..+.....+.++.+  ..++++++|||++|+|+++++++|...+
T Consensus       141 ~~~~~k~d~~~~~-~~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       141 LLVINKIDLAPMV-GADLGVMERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             EEEEEhhhccccc-cccHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            8999999996311 12344445555555  3468899999999999999999998664

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG0462|consensus

Probab=98.42  E-value=3.5e-06  Score=97.08  Aligned_cols=160  Identities=19%  Similarity=0.105  Sum_probs=102.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCC-----------------CCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT-----------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~-----------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      .+-.++.||-----|||||..+|+...+.                 -.-++++--..............++++||||+-.
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            44578899999999999999999873221                 1223333211111112222223899999999987


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                      |..-+...    +  .-++++|+|+|.+.--.- ..+..++-.+    +                             .+
T Consensus       138 Fs~EVsRs----l--aac~G~lLvVDA~qGvqA-QT~anf~lAf----e-----------------------------~~  177 (650)
T KOG0462|consen  138 FSGEVSRS----L--AACDGALLVVDASQGVQA-QTVANFYLAF----E-----------------------------AG  177 (650)
T ss_pred             ccceeheh----h--hhcCceEEEEEcCcCchH-HHHHHHHHHH----H-----------------------------cC
Confidence            74433332    1  138999999999985443 2333322211    1                             26


Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +-+|.|.||+|+-.    +.-+.....+..+-...+...+++|||+|.|++++.+.|.+.+
T Consensus       178 L~iIpVlNKIDlp~----adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  178 LAIIPVLNKIDLPS----ADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             CeEEEeeeccCCCC----CCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhC
Confidence            78999999999942    1222233444444444566799999999999999999998886

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.41  E-value=2.1e-06  Score=107.83  Aligned_cols=113  Identities=12%  Similarity=0.031  Sum_probs=68.9

Q ss_pred             EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  163 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~  163 (890)
                      .+.+|||||++.|..+....    +.  .+|++++|+|+++.-.-  .....++.++                       
T Consensus       527 ~i~fiDTPGhe~F~~lr~~g----~~--~aDivlLVVDa~~Gi~~--qT~e~I~~lk-----------------------  575 (1049)
T PRK14845        527 GLLFIDTPGHEAFTSLRKRG----GS--LADLAVLVVDINEGFKP--QTIEAINILR-----------------------  575 (1049)
T ss_pred             cEEEEECCCcHHHHHHHHhh----cc--cCCEEEEEEECcccCCH--hHHHHHHHHH-----------------------
Confidence            48999999998887665444    12  48999999999973221  1111111111                       


Q ss_pred             cccccccccCCCCcEEEEeecccCCCCCCcc-----------hhhhhHHHHH--------HHHH------------Hc--
Q psy11649        164 EHRDKGLIRTFPVPLILIGGKYDLFENLEPN-----------KKRIAVQCLR--------YLAH------------VN--  210 (890)
Q Consensus       164 ~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e-----------~r~~i~~~lr--------~la~------------~~--  210 (890)
                               ..++|+++|+||+|+.......           +.+...+++.        +++.            .+  
T Consensus       576 ---------~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~  646 (1049)
T PRK14845        576 ---------QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTR  646 (1049)
T ss_pred             ---------HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCC
Confidence                     1258999999999986321100           0011111111        1111            11  


Q ss_pred             CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        211 GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       211 Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .++++++||++|.|++.|.++|..+.
T Consensus       647 ~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        647 TVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            35799999999999999998886543

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.41  E-value=9.9e-07  Score=108.39  Aligned_cols=85  Identities=9%  Similarity=-0.058  Sum_probs=55.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-------------C-------CCCCccceeEEEEEEe-ccccceEEEEEEcCCC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-------------T-------PKPTLALEYIYARKSG-KTVMKDICHLWELGSG   93 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-------------~-------~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~   93 (890)
                      ..+|+++|..++|||||+++|+...+             .       ...|+...+  ..... ....+.++++|||||+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~--~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAAN--VSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhccc--ceeEEeecCCceEEEEEeCCCc
Confidence            56899999999999999999975210             0       111222221  11111 1122348999999999


Q ss_pred             cchhhHHhhhhccccccccCcEEEEEEeCCCcCc
Q psy11649         94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS  127 (890)
Q Consensus        94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S  127 (890)
                      ..|.......    ++  .+|++|+|+|......
T Consensus        97 ~~f~~~~~~a----l~--~aD~~llVvda~~g~~  124 (720)
T TIGR00490        97 VDFGGDVTRA----MR--AVDGAIVVVCAVEGVM  124 (720)
T ss_pred             cccHHHHHHH----HH--hcCEEEEEEecCCCCC
Confidence            8876555444    11  4999999999987543

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG0078|consensus

Probab=98.41  E-value=6.1e-07  Score=92.83  Aligned_cols=140  Identities=16%  Similarity=0.198  Sum_probs=103.6

Q ss_pred             ccccCCCCceeeccccccccccccCcccccCceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHH
Q psy11649        360 AVNFDYNKPIFVPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE  439 (890)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~s  439 (890)
                      +.++.|...|-+=|=.+-.   ..-+   -+..+-+|+-.|+..+..+..-      ---+.+-||+|.|+|.-+++ +-
T Consensus        36 ~f~~~~~sTiGIDFk~kti---~l~g---~~i~lQiWDtaGQerf~ti~~s------YyrgA~gi~LvyDitne~Sf-en  102 (207)
T KOG0078|consen   36 SFNTSFISTIGIDFKIKTI---ELDG---KKIKLQIWDTAGQERFRTITTA------YYRGAMGILLVYDITNEKSF-EN  102 (207)
T ss_pred             cCcCCccceEEEEEEEEEE---EeCC---eEEEEEEEEcccchhHHHHHHH------HHhhcCeeEEEEEccchHHH-HH
Confidence            3345566666565544432   2222   4556699999999776654332      12245579999999999999 77


Q ss_pred             HHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc
Q psy11649        440 AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF  519 (890)
Q Consensus       440 L~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~  519 (890)
                      +..|++.+++|...                                                    +||+++||+|+|+.
T Consensus       103 i~~W~~~I~e~a~~----------------------------------------------------~v~~~LvGNK~D~~  130 (207)
T KOG0078|consen  103 IRNWIKNIDEHASD----------------------------------------------------DVVKILVGNKCDLE  130 (207)
T ss_pred             HHHHHHHHHhhCCC----------------------------------------------------CCcEEEeecccccc
Confidence            77899999987652                                                    48999999999997


Q ss_pred             cCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        520 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       520 ~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      .     ++..=-....+||..||...+.||+|.+.||+..+-=|...+..
T Consensus       131 ~-----~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  131 E-----KRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             c-----cccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence            4     33333456778999999999999999999999988777777664

>PTZ00369 Ras-like protein; Provisional

Probab=98.40  E-value=1.3e-06  Score=89.52  Aligned_cols=114  Identities=17%  Similarity=0.152  Sum_probs=84.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+.    ..-++++|+|+|.+.++ +.++.|+..+......                   
T Consensus        55 l~i~Dt~G~~~~~~l~~~--~~~----~~d~iilv~D~s~~~s~-~~~~~~~~~i~~~~~~-------------------  108 (189)
T PTZ00369         55 LDILDTAGQEEYSAMRDQ--YMR----TGQGFLCVYSITSRSSF-EEIASFREQILRVKDK-------------------  108 (189)
T ss_pred             EEEEeCCCCccchhhHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            579999999777766554  222    12378999999999997 8888998766542110                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+||||||+|+.....     .-+.....++..+++..|.||++.
T Consensus       109 --------------------------------~~~piiiv~nK~Dl~~~~~-----i~~~~~~~~~~~~~~~~~e~Sak~  151 (189)
T PTZ00369        109 --------------------------------DRVPMILVGNKCDLDSERQ-----VSTGEGQELAKSFGIPFLETSAKQ  151 (189)
T ss_pred             --------------------------------CCCCEEEEEECcccccccc-----cCHHHHHHHHHHhCCEEEEeeCCC
Confidence                                            1489999999999853211     112234556777899999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|..++..
T Consensus       152 ~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        152 RVNVDEAFYELVREIRK  168 (189)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988764

>cd04116 Rab9 Rab9 subfamily

Probab=98.40  E-value=1.2e-06  Score=87.21  Aligned_cols=113  Identities=12%  Similarity=0.167  Sum_probs=81.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|++.|+..+..+...  .+..    .-++++|+|++.+.++ +.++.|...+..+...                   
T Consensus        56 l~i~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  109 (170)
T cd04116          56 LQIWDTAGQERFRSLRTP--FYRG----SDCCLLTFAVDDSQSF-QNLSNWKKEFIYYADV-------------------  109 (170)
T ss_pred             EEEEeCCChHHHHHhHHH--HhcC----CCEEEEEEECCCHHHH-HhHHHHHHHHHHhccc-------------------
Confidence            378999998766655544  2221    2268899999999988 8899998876543221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K  551 (890)
                                                   ..+-++|++|||||+|+..      .....+.++.+|..+| ...+.||+|
T Consensus       110 -----------------------------~~~~~~piilv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~e~Sa~  154 (170)
T cd04116         110 -----------------------------KEPESFPFVVLGNKNDIPE------RQVSTEEAQAWCRENGDYPYFETSAK  154 (170)
T ss_pred             -----------------------------ccCCCCcEEEEEECccccc------cccCHHHHHHHHHHCCCCeEEEEECC
Confidence                                         0012589999999999862      1223445677888888 478999999


Q ss_pred             ChhhHHHHHHHHhhh
Q psy11649        552 DPGLVKRTRDILNHY  566 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr  566 (890)
                      .+.|++.++..+.-.
T Consensus       155 ~~~~v~~~~~~~~~~  169 (170)
T cd04116         155 DATNVAAAFEEAVRR  169 (170)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999888643

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.39  E-value=8.6e-06  Score=87.91  Aligned_cols=123  Identities=12%  Similarity=0.040  Sum_probs=68.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh-------hHHhhh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL-------EVASLF  103 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~-------~Li~~~  103 (890)
                      ...+|+|+|.+|||||||+|+|++...   ...+..+.........   .....+.+|||||.....       ......
T Consensus        30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~---~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT---VDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE---ECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            478999999999999999999999532   1111222222211111   123479999999975431       111111


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                      .. .+...+.+++++|..++... +-..-...++.+.+....                           ..-.++++|.|
T Consensus       107 ~~-~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~---------------------------~i~~~~ivV~T  157 (249)
T cd01853         107 KR-YLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGP---------------------------SIWRNAIVVLT  157 (249)
T ss_pred             HH-HHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhCh---------------------------hhHhCEEEEEe
Confidence            00 01011377888887665432 211222344444443221                           11257999999


Q ss_pred             cccCC
Q psy11649        184 KYDLF  188 (890)
Q Consensus       184 K~Dl~  188 (890)
                      |+|..
T Consensus       158 ~~d~~  162 (249)
T cd01853         158 HAASS  162 (249)
T ss_pred             CCccC
Confidence            99985

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.39  E-value=1.3e-06  Score=92.68  Aligned_cols=115  Identities=17%  Similarity=0.252  Sum_probs=80.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .++|+.+|+..+..|...  ...    ..-+++||+|++.|.++ +.+ +.|...++.+.                    
T Consensus        51 L~iwDt~G~e~~~~l~~~--~~~----~~d~illvfdis~~~Sf-~~i~~~w~~~~~~~~--------------------  103 (222)
T cd04173          51 LNMWDTSGSSYYDNVRPL--AYP----DSDAVLICFDISRPETL-DSVLKKWQGETQEFC--------------------  103 (222)
T ss_pred             EEEEeCCCcHHHHHHhHH--hcc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence            489999999776665444  222    22379999999999998 555 67775433210                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH------H-HHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK------K-RIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~------~-d~Iq~~lR~fcl~yGA-  543 (890)
                                                       -++|+||||||+|+..+...-.      . -.-......+|.++|| 
T Consensus       104 ---------------------------------~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~  150 (222)
T cd04173         104 ---------------------------------PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV  150 (222)
T ss_pred             ---------------------------------CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence                                             0379999999999975321100      0 1224578899999998 


Q ss_pred             ceeEeccCChhh-HHHHHHHHhhhh
Q psy11649        544 SLLFHSSLDPGL-VKRTRDILNHYA  567 (890)
Q Consensus       544 sL~ftS~K~~~n-~~~l~kyi~hr~  567 (890)
                      +.|-||+|.+.| ++.++....-..
T Consensus       151 ~y~E~SAk~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         151 SYVECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence            799999998876 988877766544

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04123 Rab21 Rab21 subfamily

Probab=98.37  E-value=1.3e-06  Score=85.23  Aligned_cols=112  Identities=13%  Similarity=0.182  Sum_probs=79.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+.+|+..+..+...  .+.  +  .-++++|+|++.+.++ +.++.|...++....                   
T Consensus        50 ~~~~~D~~g~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  103 (162)
T cd04123          50 DLAIWDTAGQERYHALGPI--YYR--D--ADGAILVYDITDADSF-QKVKKWIKELKQMRG-------------------  103 (162)
T ss_pred             EEEEEECCchHHHHHhhHH--Hhc--c--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            3589999998655554444  222  1  2378999999999987 778888665543110                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|++||+||+|+.....     .-.+.++.++..+|+.++.+|++
T Consensus       104 ---------------------------------~~~piiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~s~~  145 (162)
T cd04123         104 ---------------------------------NNISLVIVGNKIDLERQRV-----VSKSEAEEYAKSVGAKHFETSAK  145 (162)
T ss_pred             ---------------------------------CCCeEEEEEECcccccccC-----CCHHHHHHHHHHcCCEEEEEeCC
Confidence                                             1479999999999873211     11244555677889999999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.+++.+++.|...+
T Consensus       146 ~~~gi~~~~~~l~~~~  161 (162)
T cd04123         146 TGKGIEELFLSLAKRM  161 (162)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999886543

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.36  E-value=2.2e-06  Score=84.98  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=80.4

Q ss_pred             eEEEEeCCCccc-ccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~-~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .++|+..|.... ......  .+..    .-++|+|+|++.+.++ +.++.|+..++.....                  
T Consensus        49 ~~i~D~~g~~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  103 (165)
T cd04146          49 LEILDTAGQQQADTEQLER--SIRW----ADGFVLVYSITDRSSF-DEISQLKQLIREIKKR------------------  103 (165)
T ss_pred             EEEEECCCCcccccchHHH--HHHh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC------------------
Confidence            479999998631 121222  1221    2378999999999997 9999999887653220                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      ...+|++|||||+|+...     ...-.+.+.++|..+|+..+.+|++
T Consensus       104 --------------------------------~~~~piilv~nK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sa~  146 (165)
T cd04146         104 --------------------------------DREIPVILVGNKADLLHY-----RQVSTEEGEKLASELGCLFFEVSAA  146 (165)
T ss_pred             --------------------------------CCCCCEEEEEECCchHHh-----CccCHHHHHHHHHHcCCEEEEeCCC
Confidence                                            013799999999997532     1222355677888999999999999


Q ss_pred             Ch-hhHHHHHHHHhhhh
Q psy11649        552 DP-GLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~-~n~~~l~kyi~hr~  567 (890)
                      .+ .|++.++..+...+
T Consensus       147 ~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         147 EDYDGVHSVFHELCREV  163 (165)
T ss_pred             CCchhHHHHHHHHHHHH
Confidence            98 59999999887654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=98.36  E-value=2e-06  Score=84.95  Aligned_cols=112  Identities=17%  Similarity=0.165  Sum_probs=81.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|...+..+...  .+..    .-.+++|+|.+.|.++ +.+..|...+......                   
T Consensus        50 l~i~Dt~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  103 (164)
T smart00173       50 LDILDTAGQEEFSAMRDQ--YMRT----GEGFLLVYSITDRQSF-EEIKKFREQILRVKDR-------------------  103 (164)
T ss_pred             EEEEECCCcccchHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            478999998776665554  2222    2378999999999987 8888887765432110                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      ..+|+||||||+|+-.+-     ......+..++..+++..|.+|++.
T Consensus       104 --------------------------------~~~pii~v~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (164)
T smart00173      104 --------------------------------DDVPIVLVGNKCDLESER-----VVSTEEGKELARQWGCPFLETSAKE  146 (164)
T ss_pred             --------------------------------CCCCEEEEEECccccccc-----eEcHHHHHHHHHHcCCEEEEeecCC
Confidence                                            137999999999986421     1122345566777899999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|...+
T Consensus       147 ~~~i~~l~~~l~~~~  161 (164)
T smart00173      147 RVNVDEAFYDLVREI  161 (164)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.36  E-value=2.6e-06  Score=86.24  Aligned_cols=112  Identities=21%  Similarity=0.260  Sum_probs=79.9

Q ss_pred             EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+|+.+|+..+..+.+.  .+.    ..-++|||+|++.|.++ +.+ +.|+..++.+..                    
T Consensus        52 ~i~Dt~G~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~~--------------------  104 (174)
T cd01871          52 GLWDTAGQEDYDRLRPL--SYP----QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHCP--------------------  104 (174)
T ss_pred             EEEECCCchhhhhhhhh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC--------------------
Confidence            69999999776665554  222    23389999999999998 666 578776654100                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-hH------HHHHHHHHHHHHHHcCC-c
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-NK------KRIAVQCLRYLAHVNGA-S  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E~------~d~Iq~~lR~fcl~yGA-s  544 (890)
                                                       .+|+||||||+|+...-.. +.      ...-.+....+|..+|+ .
T Consensus       105 ---------------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  151 (174)
T cd01871         105 ---------------------------------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  151 (174)
T ss_pred             ---------------------------------CCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence                                             2799999999998632110 00      01224556678999996 7


Q ss_pred             eeEeccCChhhHHHHHHHHhh
Q psy11649        545 LLFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       545 L~ftS~K~~~n~~~l~kyi~h  565 (890)
                      .+-||+|++.|++.++..+..
T Consensus       152 ~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         152 YLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             EEEecccccCCHHHHHHHHHH
Confidence            788999999999999988865

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd00876 Ras Ras family

Probab=98.36  E-value=1.5e-06  Score=84.73  Aligned_cols=112  Identities=15%  Similarity=0.223  Sum_probs=83.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+...  .+..    .-++++|+|++.|.++ +.+..|...+......                   
T Consensus        49 ~~l~D~~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  102 (160)
T cd00876          49 LDILDTAGQEEFSAMRDL--YIRQ----GDGFILVYSITDRESF-EEIKGYREQILRVKDD-------------------  102 (160)
T ss_pred             EEEEECCChHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            478999998766665555  2222    2378999999999887 7777776655543220                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++||+||+|....     .....+.++.++..+++..+.+|++.
T Consensus       103 --------------------------------~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~  145 (160)
T cd00876         103 --------------------------------EDIPIVLVGNKCDLENE-----RQVSKEEGKALAKEWGCPFIETSAKD  145 (160)
T ss_pred             --------------------------------CCCcEEEEEECCccccc-----ceecHHHHHHHHHHcCCcEEEeccCC
Confidence                                            15899999999999851     12234667888888899999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++.+|...+
T Consensus       146 ~~~i~~l~~~l~~~i  160 (160)
T cd00876         146 NINIDEVFKLLVREI  160 (160)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=98.36  E-value=1.2e-06  Score=86.47  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=80.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+.    ..-++++|+|++.+.++ +.++.|+..++.+.                     
T Consensus        54 l~i~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~---------------------  105 (164)
T cd04101          54 LFIFDSAGQELYSDMVSN--YWE----SPSVFILVYDVSNKASF-ENCSRWVNKVRTAS---------------------  105 (164)
T ss_pred             EEEEECCCHHHHHHHHHH--HhC----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC---------------------
Confidence            379999998666665555  232    23479999999999987 88899988776521                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-+     .-...++.++..+|...+.+|++.
T Consensus       106 --------------------------------~~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~  148 (164)
T cd04101         106 --------------------------------KHMPGVLVGNKMDLADKAE-----VTDAQAQAFAQANQLKFFKTSALR  148 (164)
T ss_pred             --------------------------------CCCCEEEEEECcccccccC-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            1378999999999863211     111223556777889999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.+++.++..|...+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (164)
T cd04101         149 GVGYEEPFESLARAF  163 (164)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999998887653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04113 Rab4 Rab4 subfamily

Probab=98.35  E-value=1.5e-06  Score=85.67  Aligned_cols=110  Identities=20%  Similarity=0.252  Sum_probs=81.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|...+..+.+.  -+.  +  .-.+++|+|++.+.++ +.+..|+..++.+..                    
T Consensus        51 l~l~D~~G~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  103 (161)
T cd04113          51 LQIWDTAGQERFRSVTRS--YYR--G--AAGALLVYDITNRTSF-EALPTWLSDARALAS--------------------  103 (161)
T ss_pred             EEEEECcchHHHHHhHHH--Hhc--C--CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            379999998666554433  122  1  2379999999999998 788889877654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++||+||+|+...     ...-.+.++.++..+|...+.+|+|.
T Consensus       104 --------------------------------~~~~iivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (161)
T cd04113         104 --------------------------------PNIVVILVGNKSDLADQ-----REVTFLEASRFAQENGLLFLETSALT  146 (161)
T ss_pred             --------------------------------CCCeEEEEEEchhcchh-----ccCCHHHHHHHHHHcCCEEEEEECCC
Confidence                                            03789999999999741     11223445677778899999999999


Q ss_pred             hhhHHHHHHHHhhh
Q psy11649        553 PGLVKRTRDILNHY  566 (890)
Q Consensus       553 ~~n~~~l~kyi~hr  566 (890)
                      +.|++.++..+..+
T Consensus       147 ~~~i~~~~~~~~~~  160 (161)
T cd04113         147 GENVEEAFLKCARS  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988765

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG3886|consensus

Probab=98.34  E-value=1.2e-06  Score=91.60  Aligned_cols=166  Identities=16%  Similarity=0.195  Sum_probs=97.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC---CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhcccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK---NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSLTA  110 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~---~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~  110 (890)
                      .+||+++|..|+|||||-..+..+   .+...++-++|.....+.  .-+...+++||++||+.+ +.....-+...++ 
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~R--flGnl~LnlwDcGgqe~fmen~~~~q~d~iF~-   80 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVR--FLGNLVLNLWDCGGQEEFMENYLSSQEDNIFR-   80 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhh--hhhhheeehhccCCcHHHHHHHHhhcchhhhe-
Confidence            468999999999999987765532   222334444443222221  112226999999999754 3332222333344 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +.+++|.|||++..+-- ..+..+...+...+..                           ....-+.....|+|+.. 
T Consensus        81 -nV~vli~vFDves~e~~-~D~~~yqk~Le~ll~~---------------------------SP~AkiF~l~hKmDLv~-  130 (295)
T KOG3886|consen   81 -NVQVLIYVFDVESREME-KDFHYYQKCLEALLQN---------------------------SPEAKIFCLLHKMDLVQ-  130 (295)
T ss_pred             -eheeeeeeeeccchhhh-hhHHHHHHHHHHHHhc---------------------------CCcceEEEEEeechhcc-
Confidence             68899999999876432 3444444333332221                           22366888899999974 


Q ss_pred             CCcchhhhhH----HHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAV----QCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       191 ~d~e~r~~i~----~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        .++++.+.    +.++.+....++.++.||.-+....+..-..+.++
T Consensus       131 --~d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwDetl~KAWS~iv~~l  177 (295)
T KOG3886|consen  131 --EDARELIFQRRKEDLRRLSRPLECKCFPTSIWDETLYKAWSSIVYNL  177 (295)
T ss_pred             --cchHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Confidence              22444333    34445555566778888887755555544444433

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.34  E-value=1.9e-06  Score=86.58  Aligned_cols=112  Identities=19%  Similarity=0.225  Sum_probs=79.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|+..+..+.+.  .+.  +  .-++|+|+|++.|.++-+..+.|+..++.+.                     
T Consensus        50 ~~i~Dt~G~~~~~~~~~~--~~~--~--a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---------------------  102 (173)
T cd04130          50 LQLCDTAGQDEFDKLRPL--CYP--D--TDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---------------------  102 (173)
T ss_pred             EEEEECCCChhhcccccc--ccC--C--CcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---------------------
Confidence            368999999776665554  222  1  2278999999999999444467877765310                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC-------hhHHHHHHHHHHHHHHHcCC-c
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE-------PNKKRIAVQCLRYLAHVNGA-S  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~-------~E~~d~Iq~~lR~fcl~yGA-s  544 (890)
                                                      -++|++|||||+|+.....       ..++..-++.++.||..+|+ .
T Consensus       103 --------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~  150 (173)
T cd04130         103 --------------------------------PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE  150 (173)
T ss_pred             --------------------------------CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence                                            0378999999999864321       01122234567789999998 8


Q ss_pred             eeEeccCChhhHHHHHHHH
Q psy11649        545 LLFHSSLDPGLVKRTRDIL  563 (890)
Q Consensus       545 L~ftS~K~~~n~~~l~kyi  563 (890)
                      .+.||+|.+.|++.++.-+
T Consensus       151 ~~e~Sa~~~~~v~~lf~~~  169 (173)
T cd04130         151 YIECSALTQKNLKEVFDTA  169 (173)
T ss_pred             EEEEeCCCCCCHHHHHHHH
Confidence            8999999999999987644

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG0087|consensus

Probab=98.34  E-value=1e-06  Score=91.17  Aligned_cols=134  Identities=19%  Similarity=0.295  Sum_probs=104.1

Q ss_pred             CCCCceeeccccccccccccCcccccCcee-EEEEeCCCccccccccccccccccccc-ceEEEEEEeCCCchhHHHHHH
Q psy11649        364 DYNKPIFVPFGTDSVASIEGTTQYVTADIC-HLWELGSGTSRLEVASLFSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAE  441 (890)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~-~vW~L~G~~~~~~Ll~~~~al~~~~~~-~~~viivlDlS~Pw~l~~sL~  441 (890)
                      |---+|-|-|+|+.+. |      -.|.|- .||+=.|+.-+.       |+++.-.+ ..-+++|.|+||.-++ +.++
T Consensus        42 ~SksTIGvef~t~t~~-v------d~k~vkaqIWDTAGQERyr-------AitSaYYrgAvGAllVYDITr~~Tf-env~  106 (222)
T KOG0087|consen   42 ESKSTIGVEFATRTVN-V------DGKTVKAQIWDTAGQERYR-------AITSAYYRGAVGALLVYDITRRQTF-ENVE  106 (222)
T ss_pred             ccccceeEEEEeecee-e------cCcEEEEeeecccchhhhc-------cccchhhcccceeEEEEechhHHHH-HHHH
Confidence            4445666777766543 2      234443 899999995554       45555543 4569999999999999 8999


Q ss_pred             HHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC
Q psy11649        442 TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN  521 (890)
Q Consensus       442 ~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~  521 (890)
                      +|++.||+|.|+                                                    -|+|++||+|+|+-+ 
T Consensus       107 rWL~ELRdhad~----------------------------------------------------nivimLvGNK~DL~~-  133 (222)
T KOG0087|consen  107 RWLKELRDHADS----------------------------------------------------NIVIMLVGNKSDLNH-  133 (222)
T ss_pred             HHHHHHHhcCCC----------------------------------------------------CeEEEEeecchhhhh-
Confidence            999999999885                                                    288999999999974 


Q ss_pred             CChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        522 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       522 ~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                          .+..-.+-.+.||...|-..+.||+.+..||...+.-++..+|.
T Consensus       134 ----lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~  177 (222)
T KOG0087|consen  134 ----LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIYK  177 (222)
T ss_pred             ----ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHHH
Confidence                11222345678999999999999999999999999999999997

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.33  E-value=1.3e-05  Score=88.72  Aligned_cols=87  Identities=15%  Similarity=0.053  Sum_probs=51.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF  106 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~  106 (890)
                      ...+|+|+|.+||||||++|+|++...   +...+.+..-.  ..... ..+.++.||||||......+....    +. 
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~--~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~-  112 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM--MVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNIIKR-  112 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE--EEEEE-ECCeEEEEEECCCCCchHHHHHHHHHHHHH-
Confidence            478999999999999999999998532   11122221111  11111 233489999999987542222211    10 


Q ss_pred             ccccccCcEEEEEEeCCC
Q psy11649        107 SLTAQSGFTLVLMLDLSR  124 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSn  124 (890)
                      .+...+.|++++|..++.
T Consensus       113 ~l~~~g~DvVLyV~rLD~  130 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDA  130 (313)
T ss_pred             HhhcCCCCEEEEEeccCc
Confidence            011124899999966553

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.32  E-value=1.1e-05  Score=91.06  Aligned_cols=249  Identities=13%  Similarity=0.102  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEecc----------cc----ceEEEEEEcCCCcch--
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKT----------VM----KDICHLWELGSGTSR--   96 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~----------~~----k~~l~IwDlpG~~~~--   96 (890)
                      ++|.+||.||||||||+|+|++..   .++ |..+++..........          ..    ..++.+.|+||...-  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny-pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~   81 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY-PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS   81 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeeccc-ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence            689999999999999999999953   233 4444443221111110          00    125899999996532  


Q ss_pred             --hhHHhhh-hccccccccCcEEEEEEeCCCcC---------chHHHHHHHHHHH--------HHHHhhhhhhhhh----
Q psy11649         97 --LEVASLF-SSFSLTAQSGFTLVLMLDLSRLN---------SLWTEAETFLAKF--------RAIFESNESVREK----  152 (890)
Q Consensus        97 --~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~---------S~~~~L~~wlq~I--------~e~~~~ll~~~~~----  152 (890)
                        +.+...+ ..  ++  .+|+++.|+|.+.-.         .-...+.....++        .+.++++......    
T Consensus        82 ~g~glg~~fL~~--i~--~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~~~  157 (364)
T PRK09601         82 KGEGLGNQFLAN--IR--EVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGDKE  157 (364)
T ss_pred             hHHHHHHHHHHH--HH--hCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccchh
Confidence              2333333 11  22  499999999986311         1111222111111        1222221110000    


Q ss_pred             ----ccc-------ccccc--ccccc--cccc----cccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe
Q psy11649        153 ----RGS-------FEHFR--TADEH--RDKG----LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS  213 (890)
Q Consensus       153 ----~~~-------l~~~~--~~~~~--~d~~----li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~  213 (890)
                          ...       +++..  ...+.  .+..    ..-....|+++|+|+.|.  ++.  ........+++++..+|.+
T Consensus       158 ~~~e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~--~~~--~~~~~~~~i~~~~~~~~~~  233 (364)
T PRK09601        158 AKAELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDED--DLA--DGNPYVKKVREIAAKEGAE  233 (364)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCcc--ccc--cccHHHHHHHHHHHHcCCe
Confidence                000       11100  00000  0111    111234899999999984  111  1112345677777778989


Q ss_pred             EEEEeccCCCCHH-----HHHHHHHHHHhccC-ccc--ccccCC-CCcccccCCCccccccccCCCCCCCCccccccccc
Q psy11649        214 LLFHSSLDPGLVK-----RTRDILNHYAFSSH-LAS--AVNFDY-NKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFN  284 (890)
Q Consensus       214 l~etSAK~~~nId-----~Lk~~I~~~lf~~~-~~~--~~~~d~-~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~~~  284 (890)
                      ++.+||+-...+.     +-++++...-...+ ...  ....+. .-..+-+.|.+..   ..=+++++++-.+.+..+|
T Consensus       234 ~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~ev---rawti~~GstA~~aAg~IH  310 (364)
T PRK09601        234 VVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEV---RAWTIKKGTTAPQAAGVIH  310 (364)
T ss_pred             EEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeE---EEEEeCCCCchHHHhhcch
Confidence            9999985433331     12222222110000 000  000000 0112334565543   2223667888888888889


Q ss_pred             cccchhHHHhhc
Q psy11649        285 RSRGMKFEKKRG  296 (890)
Q Consensus       285 ~~~~~~f~~~~~  296 (890)
                      .++...|-++.+
T Consensus       311 sD~~kgFI~AeV  322 (364)
T PRK09601        311 TDFEKGFIRAEV  322 (364)
T ss_pred             hhHhhccEEEEE
Confidence            999888876665

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.32  E-value=5.1e-06  Score=89.07  Aligned_cols=124  Identities=12%  Similarity=0.047  Sum_probs=59.7

Q ss_pred             EEEEEEcCCCcchhhHHhhhh--ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLFS--SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  161 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~r--~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~  161 (890)
                      ...|+|||||.++-......+  -+.+.....-++++++|.....+--.-+..++..+.-..                  
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~------------------  153 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML------------------  153 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH------------------
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh------------------
Confidence            689999999987633332220  000110125689999998765542122222222222111                  


Q ss_pred             cccccccccccCCCCcEEEEeecccCCCCCCcchhhh--------------hHHHHHHHHH---HcC-C-eEEEEeccCC
Q psy11649        162 ADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI--------------AVQCLRYLAH---VNG-A-SLLFHSSLDP  222 (890)
Q Consensus       162 ~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~--------------i~~~lr~la~---~~G-a-~l~etSAK~~  222 (890)
                                 .+++|.|.|.||+|+.....+...+.              .....+.++.   .++ . .++.+|++++
T Consensus       154 -----------~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~  222 (238)
T PF03029_consen  154 -----------RLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDG  222 (238)
T ss_dssp             -----------HHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTT
T ss_pred             -----------hCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCCh
Confidence                       13689999999999974110000000              1112223333   234 3 6999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy11649        223 GLVKRTRDILNHYA  236 (890)
Q Consensus       223 ~nId~Lk~~I~~~l  236 (890)
                      .++++|...|.+..
T Consensus       223 ~~~~~L~~~id~a~  236 (238)
T PF03029_consen  223 EGMEELLAAIDKAN  236 (238)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998887653

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd04142 RRP22 RRP22 subfamily

Probab=98.32  E-value=3.4e-06  Score=87.61  Aligned_cols=99  Identities=13%  Similarity=0.069  Sum_probs=72.1

Q ss_pred             eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649        422 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL  501 (890)
Q Consensus       422 ~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l  501 (890)
                      -++|+|+|.+.|+++ +.++.|++.+.++...                                                
T Consensus        82 d~iilv~D~~~~~S~-~~~~~~~~~i~~~~~~------------------------------------------------  112 (198)
T cd04142          82 RAFILVYDICSPDSF-HYVKLLRQQILETRPA------------------------------------------------  112 (198)
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhccc------------------------------------------------
Confidence            379999999999998 8888888776653320                                                


Q ss_pred             cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH-HcCCceeEeccCChhhHHHHHHHHhhhhcCCCCCcc
Q psy11649        502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASA  575 (890)
Q Consensus       502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~~~~  575 (890)
                       .+-++|+||||||+|+... .....+.    ++.+|. .+++..|.||+|.+.|++.++..+...++.-..+.+
T Consensus       113 -~~~~~piiivgNK~Dl~~~-~~~~~~~----~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~  181 (198)
T cd04142         113 -GNKEPPIVVVGNKRDQQRH-RFAPRHV----LSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRGRSTH  181 (198)
T ss_pred             -CCCCCCEEEEEECcccccc-ccccHHH----HHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccCCCcc
Confidence             0114899999999999642 1111112    334443 468999999999999999999999999987555433

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0084|consensus

Probab=98.30  E-value=2.6e-06  Score=87.37  Aligned_cols=116  Identities=16%  Similarity=0.259  Sum_probs=91.0

Q ss_pred             cCce-eEEEEeCCCccccccccccccccccccc-ceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccc
Q psy11649        389 TADI-CHLWELGSGTSRLEVASLFSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH  466 (890)
Q Consensus       389 ~kdi-~~vW~L~G~~~~~~Ll~~~~al~~~~~~-~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~  466 (890)
                      .|+| +.||+-.|+..++       +++..-.+ .-.||||.|+|+-+++ +.+..|++.++.|...             
T Consensus        55 gk~iKlQIWDTAGQERFr-------tit~syYR~ahGii~vyDiT~~~SF-~~v~~Wi~Ei~~~~~~-------------  113 (205)
T KOG0084|consen   55 GKTIKLQIWDTAGQERFR-------TITSSYYRGAHGIIFVYDITKQESF-NNVKRWIQEIDRYASE-------------  113 (205)
T ss_pred             ceEEEEEeeeccccHHHh-------hhhHhhccCCCeEEEEEEcccHHHh-hhHHHHHHHhhhhccC-------------
Confidence            4444 5999999995555       34544443 3369999999999999 9999999998886552             


Q ss_pred             cccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc-e
Q psy11649        467 FRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-L  545 (890)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs-L  545 (890)
                                                             +||.++||+|||+-     |+.-.-....+.|+..+|-. +
T Consensus       114 ---------------------------------------~v~~lLVGNK~Dl~-----~~~~v~~~~a~~fa~~~~~~~f  149 (205)
T KOG0084|consen  114 ---------------------------------------NVPKLLVGNKCDLT-----EKRVVSTEEAQEFADELGIPIF  149 (205)
T ss_pred             ---------------------------------------CCCeEEEeeccccH-----hheecCHHHHHHHHHhcCCcce
Confidence                                                   28899999999986     23333344558999999988 8


Q ss_pred             eEeccCChhhHHHHHHHHhhhhcC
Q psy11649        546 LFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       546 ~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      +=||+|.+.|++-.+--|.+.+.-
T Consensus       150 ~ETSAK~~~NVe~~F~~la~~lk~  173 (205)
T KOG0084|consen  150 LETSAKDSTNVEDAFLTLAKELKQ  173 (205)
T ss_pred             eecccCCccCHHHHHHHHHHHHHH
Confidence            999999999999998888877764

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.30  E-value=4.5e-06  Score=94.85  Aligned_cols=155  Identities=15%  Similarity=0.094  Sum_probs=97.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-----------------CCCCCccceeEEEEEE--eccccceEEEEEEcCCCcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-----------------TPKPTLALEYIYARKS--GKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-----------------~~kptigvdY~f~~~~--g~~~~k~~l~IwDlpG~~~   95 (890)
                      -.+..+|--=--|||||..||+...+                 ...-++++--.-.+..  ........+|++||||+-.
T Consensus         9 IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVD   88 (603)
T COG0481           9 IRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   88 (603)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccc
Confidence            45677788888999999999986210                 1122333211111111  1111233899999999876


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                      |.--++..    +  .-+.++++|+|.++--.- ..|...+..+.    .                             +
T Consensus        89 FsYEVSRS----L--AACEGalLvVDAsQGveA-QTlAN~YlAle----~-----------------------------~  128 (603)
T COG0481          89 FSYEVSRS----L--AACEGALLVVDASQGVEA-QTLANVYLALE----N-----------------------------N  128 (603)
T ss_pred             eEEEehhh----H--hhCCCcEEEEECccchHH-HHHHHHHHHHH----c-----------------------------C
Confidence            53222111    1  137899999999996543 34544443221    1                             5


Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .-++-|.||+||-.. +      ..+...++..-.|+.   .+.+|||+|.||+++.+.|.+.+
T Consensus       129 LeIiPViNKIDLP~A-d------pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         129 LEIIPVLNKIDLPAA-D------PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             cEEEEeeecccCCCC-C------HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence            678999999999521 1      122344455556653   78999999999999999999887

>cd01900 YchF YchF subfamily

Probab=98.29  E-value=7.4e-06  Score=89.54  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=50.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccc--------------cceEEEEEEcCCCcch----
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTV--------------MKDICHLWELGSGTSR----   96 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~--------------~k~~l~IwDlpG~~~~----   96 (890)
                      |.+||.||||||||+|+|++..   .++ |..+++...........              ....++++|+||...-    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~-pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~   79 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANY-PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG   79 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccc-cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence            5799999999999999999953   233 44444432222221100              0115899999996532    


Q ss_pred             hhHHhhh-hccccccccCcEEEEEEeCC
Q psy11649         97 LEVASLF-SSFSLTAQSGFTLVLMLDLS  123 (890)
Q Consensus        97 ~~Li~~~-r~~~~~~~~ad~IIIV~DlS  123 (890)
                      ..+...+ ..  ++  .+|+++.|+|..
T Consensus        80 ~glg~~fL~~--i~--~~D~li~VV~~f  103 (274)
T cd01900          80 EGLGNKFLSH--IR--EVDAIAHVVRCF  103 (274)
T ss_pred             hHHHHHHHHH--HH--hCCEEEEEEeCc
Confidence            2333334 11  12  499999999875

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.29  E-value=9e-06  Score=91.09  Aligned_cols=57  Identities=14%  Similarity=0.051  Sum_probs=38.0

Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHHHHHH-------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~-------~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .-++|+||+|+...   ...+....+++.....       +..+++.+||+++.|+++|.+.|....
T Consensus       196 aDIiVVNKaDl~~~---~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        196 ADLIVINKADGDNK---TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             hheEEeehhcccch---hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            34899999998631   1111222233332221       236799999999999999999998875

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.29  E-value=1.9e-05  Score=89.55  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=97.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC----C--------------CCCCCC---ccceeEE---EEEEe--ccccceEEEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK----N--------------DTPKPT---LALEYIY---ARKSG--KTVMKDICHL   87 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~----~--------------~~~kpt---igvdY~f---~~~~g--~~~~k~~l~I   87 (890)
                      +.+.|.|+|..++|||||+|+|.+.    .              .+..++   .+.|-.|   .....  ...-+.++.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            3789999999999999999999985    1              111223   2333333   11111  1112237899


Q ss_pred             EEcCCCcc--------hhh-----------------HHhhhhccccccccCcEEEEEE-eCC--C--cCchHHHHHHHHH
Q psy11649         88 WELGSGTS--------RLE-----------------VASLFSSFSLTAQSGFTLVLML-DLS--R--LNSLWTEAETFLA  137 (890)
Q Consensus        88 wDlpG~~~--------~~~-----------------Li~~~r~~~~~~~~ad~IIIV~-DlS--n--p~S~~~~L~~wlq  137 (890)
                      .||+|..-        -..                 -...-+.+.+. ..++..|+|. |.+  +  .+.+.+.-++|++
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~-dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ-EHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH-hcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999431        000                 00000100000 1278888888 765  1  2233234445555


Q ss_pred             HHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEE
Q psy11649        138 KFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFH  217 (890)
Q Consensus       138 ~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~et  217 (890)
                      ++++                                .++|+++|.||+|-..   + .   .......+..+|+++++.+
T Consensus       175 eLk~--------------------------------~~kPfiivlN~~dp~~---~-e---t~~l~~~l~eky~vpvl~v  215 (492)
T TIGR02836       175 ELKE--------------------------------LNKPFIILLNSTHPYH---P-E---TEALRQELEEKYDVPVLAM  215 (492)
T ss_pred             HHHh--------------------------------cCCCEEEEEECcCCCC---c-h---hHHHHHHHHHHhCCceEEE
Confidence            4433                                3799999999999421   1 1   2233456778899998998


Q ss_pred             eccCCCCHHHHHHHHHHHHhccCc
Q psy11649        218 SSLDPGLVKRTRDILNHYAFSSHL  241 (890)
Q Consensus       218 SAK~~~nId~Lk~~I~~~lf~~~~  241 (890)
                      |+.. -.-+.+...+.+.+|..|.
T Consensus       216 ~c~~-l~~~DI~~il~~vL~EFPv  238 (492)
T TIGR02836       216 DVES-MRESDILSVLEEVLYEFPI  238 (492)
T ss_pred             EHHH-cCHHHHHHHHHHHHhcCCc
Confidence            8753 2356677778888887653

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd04129 Rho2 Rho2 subfamily

Probab=98.28  E-value=3.9e-06  Score=85.78  Aligned_cols=122  Identities=20%  Similarity=0.286  Sum_probs=84.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|+..+..+..+  .+  ..  .-.+++++|++.+.++ +.+. .|+..++.+..                   
T Consensus        51 l~i~Dt~g~~~~~~~~~~--~~--~~--a~~~llv~~i~~~~s~-~~~~~~~~~~i~~~~~-------------------  104 (187)
T cd04129          51 LALWDTAGQEEYERLRPL--SY--SK--AHVILIGFAVDTPDSL-ENVRTKWIEEVRRYCP-------------------  104 (187)
T ss_pred             EEEEECCCChhccccchh--hc--CC--CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            379999998655443222  11  12  2378999999999877 6664 68887764211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCC-ChhH---HHHH-HHHHHHHHHHcCC-ce
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENL-EPNK---KRIA-VQCLRYLAHVNGA-SL  545 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~-~~E~---~d~I-q~~lR~fcl~yGA-sL  545 (890)
                                                        .+|+||||||+|+..+. ..+.   .+++ ......+|..+|+ ..
T Consensus       105 ----------------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (187)
T cd04129         105 ----------------------------------NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKY  150 (187)
T ss_pred             ----------------------------------CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEE
Confidence                                              17899999999986432 1111   1111 2345678888997 78


Q ss_pred             eEeccCChhhHHHHHHHHhhhhcCCCCCc
Q psy11649        546 LFHSSLDPGLVKRTRDILNHYAFSSHLAS  574 (890)
Q Consensus       546 ~ftS~K~~~n~~~l~kyi~hr~fg~~~~~  574 (890)
                      |.||+|.+.|++.++..+...+.+...+.
T Consensus       151 ~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~  179 (187)
T cd04129         151 MECSALTGEGVDDVFEAATRAALLVRKSE  179 (187)
T ss_pred             EEccCCCCCCHHHHHHHHHHHHhcccCcc
Confidence            99999999999999999998887754443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG1145|consensus

Probab=98.28  E-value=1e-05  Score=93.37  Aligned_cols=151  Identities=13%  Similarity=0.096  Sum_probs=97.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF  106 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~  106 (890)
                      ++..=|-++|----|||||+..|-+..      +..-..+| .|   .+.  ...+..+.+.||||+..|..+...-   
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIG-AF---~V~--~p~G~~iTFLDTPGHaAF~aMRaRG---  221 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIG-AF---TVT--LPSGKSITFLDTPGHAAFSAMRARG---  221 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceec-eE---EEe--cCCCCEEEEecCCcHHHHHHHHhcc---
Confidence            344458899999999999999987732      12222233 12   122  1223489999999998887776544   


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                         ..-+|.+|+|+...+----     .-.+.|.-                             ..+.++|+||+.||+|
T Consensus       222 ---A~vtDIvVLVVAadDGVmp-----QT~EaIkh-----------------------------Ak~A~VpiVvAinKiD  264 (683)
T KOG1145|consen  222 ---ANVTDIVVLVVAADDGVMP-----QTLEAIKH-----------------------------AKSANVPIVVAINKID  264 (683)
T ss_pred             ---CccccEEEEEEEccCCccH-----hHHHHHHH-----------------------------HHhcCCCEEEEEeccC
Confidence               1137999999988773221     11122222                             2234799999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHH------HHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYL------AHVNG--ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~l------a~~~G--a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ... -++      ....+++      +..+|  +.++++||++|.|++.|-+.+.-++
T Consensus       265 kp~-a~p------ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  265 KPG-ANP------EKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             CCC-CCH------HHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence            742 111      1222332      23455  4689999999999999998886654

>cd01861 Rab6 Rab6 subfamily

Probab=98.28  E-value=2.7e-06  Score=83.53  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=80.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|......++..  -+.    ...++++|+|++.|.++ +.++.|+..++...                     
T Consensus        51 l~~~D~~G~~~~~~~~~~--~~~----~~~~ii~v~d~~~~~s~-~~~~~~~~~~~~~~---------------------  102 (161)
T cd01861          51 LQLWDTAGQERFRSLIPS--YIR----DSSVAVVVYDITNRQSF-DNTDKWIDDVRDER---------------------  102 (161)
T ss_pred             EEEEECCCcHHHHHHHHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC---------------------
Confidence            689999998776665554  122    12379999999999987 78888877654310                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     +.++|+++|+||+|+..     +.......+..++..+|+..+.+|++.
T Consensus       103 -------------------------------~~~~~iilv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (161)
T cd01861         103 -------------------------------GNDVIIVLVGNKTDLSD-----KRQVSTEEGEKKAKELNAMFIETSAKA  146 (161)
T ss_pred             -------------------------------CCCCEEEEEEEChhccc-----cCccCHHHHHHHHHHhCCEEEEEeCCC
Confidence                                           01489999999999952     111222335555667889999999999


Q ss_pred             hhhHHHHHHHHhhh
Q psy11649        553 PGLVKRTRDILNHY  566 (890)
Q Consensus       553 ~~n~~~l~kyi~hr  566 (890)
                      +.|++.+++.|...
T Consensus       147 ~~~v~~l~~~i~~~  160 (161)
T cd01861         147 GHNVKELFRKIASA  160 (161)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01862 Rab7 Rab7 subfamily

Probab=98.27  E-value=3.6e-06  Score=83.42  Aligned_cols=117  Identities=15%  Similarity=0.247  Sum_probs=82.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+.+|...+..+...  .+.    ...++|+|+|.+.|.++ +.+..|.+.+......                   
T Consensus        51 ~~~~D~~g~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~-------------------  104 (172)
T cd01862          51 LQIWDTAGQERFQSLGVA--FYR----GADCCVLVYDVTNPKSF-ESLDSWRDEFLIQASP-------------------  104 (172)
T ss_pred             EEEEeCCChHHHHhHHHH--Hhc----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCc-------------------
Confidence            589999998666554443  121    12379999999999876 7777887643221110                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K  551 (890)
                                                   .++.++|++||+||+|+...     .......++.+|..+| ..++.+|++
T Consensus       105 -----------------------------~~~~~~p~ilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~  150 (172)
T cd01862         105 -----------------------------SDPENFPFVVLGNKIDLEEK-----RQVSTKKAQQWCQSNGNIPYFETSAK  150 (172)
T ss_pred             -----------------------------cCCCCceEEEEEECcccccc-----cccCHHHHHHHHHHcCCceEEEEECC
Confidence                                         01225899999999999841     1111233566777888 789999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...++.
T Consensus       151 ~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         151 EAINVEQAFETIARKALE  168 (172)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999988764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0092|consensus

Probab=98.26  E-value=3.7e-06  Score=85.90  Aligned_cols=118  Identities=14%  Similarity=0.219  Sum_probs=94.1

Q ss_pred             EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH  473 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~  473 (890)
                      -||+.+|+..+..|-+|  =..-.+    ++|+|.|+++..++ ..++.|.+.|++++..                    
T Consensus        57 eIWDTAGQERy~slapM--YyRgA~----AAivvYDit~~~SF-~~aK~WvkeL~~~~~~--------------------  109 (200)
T KOG0092|consen   57 EIWDTAGQERYHSLAPM--YYRGAN----AAIVVYDITDEESF-EKAKNWVKELQRQASP--------------------  109 (200)
T ss_pred             EEEEcCCcccccccccc--eecCCc----EEEEEEecccHHHH-HHHHHHHHHHHhhCCC--------------------
Confidence            49999999999988888  333333    79999999999999 9999999988874431                    


Q ss_pred             ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649        474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP  553 (890)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~  553 (890)
                                                      .+=|.+||+|+|+-+.-     ..--+-.-.||-.-|+..|=||+|.+
T Consensus       110 --------------------------------~~vialvGNK~DL~~~R-----~V~~~ea~~yAe~~gll~~ETSAKTg  152 (200)
T KOG0092|consen  110 --------------------------------NIVIALVGNKADLLERR-----EVEFEEAQAYAESQGLLFFETSAKTG  152 (200)
T ss_pred             --------------------------------CeEEEEecchhhhhhcc-----cccHHHHHHHHHhcCCEEEEEecccc
Confidence                                            14467899999998621     22223455688889999999999999


Q ss_pred             hhHHHHHHHHhhhhcCCCCCcc
Q psy11649        554 GLVKRTRDILNHYAFSSHLASA  575 (890)
Q Consensus       554 ~n~~~l~kyi~hr~fg~~~~~~  575 (890)
                      .|++.++.-|..+++-..+...
T Consensus       153 ~Nv~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  153 ENVNEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             cCHHHHHHHHHHhccCcccccc
Confidence            9999999999999998776644

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=98.26  E-value=4.8e-06  Score=81.64  Aligned_cols=113  Identities=16%  Similarity=0.172  Sum_probs=82.5

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .+.+|+..|+..+..+...  .+...    -.+++|+|++.|.++ +.+..|+..+....+                   
T Consensus        49 ~~~i~D~~g~~~~~~~~~~--~~~~~----~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  102 (164)
T cd04139          49 QLNILDTAGQEDYAAIRDN--YHRSG----EGFLLVFSITDMESF-TATAEFREQILRVKD-------------------  102 (164)
T ss_pred             EEEEEECCChhhhhHHHHH--HhhcC----CEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999999877776665  33322    268899999999987 777777766654222                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      +..+|+|||+||+|+...-+     .-....+.+|..+|+..|.+|++
T Consensus       103 --------------------------------~~~~piiiv~NK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  145 (164)
T cd04139         103 --------------------------------DDNVPLLLVGNKCDLEDKRQ-----VSSEEAANLARQWGVPYVETSAK  145 (164)
T ss_pred             --------------------------------CCCCCEEEEEEccccccccc-----cCHHHHHHHHHHhCCeEEEeeCC
Confidence                                            12489999999999975211     11223445677789999999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.+++.++.-|.+++
T Consensus       146 ~~~gi~~l~~~l~~~~  161 (164)
T cd04139         146 TRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999888765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.25  E-value=8.8e-06  Score=92.09  Aligned_cols=163  Identities=13%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc--CCCCCCCCccc-eeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE--KNDTPKPTLAL-EYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTA  110 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~--~~~~~kptigv-dY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~  110 (890)
                      ..+|+|+|++|+|||||||.|.|  .++.....+|+ +.+..........-..+.+||+||.-....-...| ....+. 
T Consensus        35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~-  113 (376)
T PF05049_consen   35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY-  113 (376)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG-
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc-
Confidence            57899999999999999999977  22211122221 11000111111111159999999964332233333 111111 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHH-HHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC-C
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETF-LAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL-F  188 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~w-lq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl-~  188 (890)
                       .-|.+||+.+    .+| ....-+ .+.++                                ..+.|+.+|-+|+|. +
T Consensus       114 -~yD~fiii~s----~rf-~~ndv~La~~i~--------------------------------~~gK~fyfVRTKvD~Dl  155 (376)
T PF05049_consen  114 -RYDFFIIISS----ERF-TENDVQLAKEIQ--------------------------------RMGKKFYFVRTKVDSDL  155 (376)
T ss_dssp             -G-SEEEEEES----SS---HHHHHHHHHHH--------------------------------HTT-EEEEEE--HHHHH
T ss_pred             -ccCEEEEEeC----CCC-chhhHHHHHHHH--------------------------------HcCCcEEEEEecccccH
Confidence             3788888775    233 112222 22222                                237899999999995 1


Q ss_pred             CCC-----CcchhhhhHHHHHHHHHH----cCC---eEEEEeccCCCC--HHHHHHHHHHHH
Q psy11649        189 ENL-----EPNKKRIAVQCLRYLAHV----NGA---SLLFHSSLDPGL--VKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~-----d~e~r~~i~~~lr~la~~----~Ga---~l~etSAK~~~n--Id~Lk~~I~~~l  236 (890)
                      .+.     ..-.+....+.+|+-|..    .|+   .+|.+|+.+-..  ...|.+.+..-+
T Consensus       156 ~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL  217 (376)
T PF05049_consen  156 YNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL  217 (376)
T ss_dssp             HHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred             hhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence            100     000122334455555544    243   488999877554  556766666554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.24  E-value=1.1e-05  Score=91.08  Aligned_cols=157  Identities=18%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC----------------CC-----------------CCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND----------------TP-----------------KPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~----------------~~-----------------kptigvdY~f~~~~g~~~   80 (890)
                      ...+++|+|...+|||||+-+|+-..+                .-                 .-+++++-.+....   .
T Consensus         6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe---t   82 (428)
T COG5256           6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE---T   82 (428)
T ss_pred             CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee---c
Confidence            468999999999999999999875211                00                 12233332222222   1


Q ss_pred             cceEEEEEEcCCCcch-hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649         81 MKDICHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF  159 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~  159 (890)
                      ++..+.|.|+||...| ..++.-.       .+||+.|+|+|.++.+-- ..+ .--.+.++++-               
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGa-------sqAD~aVLVV~a~~~efE-~g~-~~~gQtrEH~~---------------  138 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGA-------SQADVAVLVVDARDGEFE-AGF-GVGGQTREHAF---------------  138 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcch-------hhccEEEEEEECCCCccc-ccc-ccCCchhHHHH---------------
Confidence            2337999999996444 3333222       149999999999887420 010 00011122210               


Q ss_pred             cccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649        160 RTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       160 ~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L  228 (890)
                                +...+|+ -+||+.||+|+.. .+++.-+.+..++..+-+..|     +.|+++|+-+|.|+.+-
T Consensus       139 ----------La~tlGi~~lIVavNKMD~v~-wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         139 ----------LARTLGIKQLIVAVNKMDLVS-WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             ----------HHHhcCCceEEEEEEcccccc-cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence                      0111222 4788999999974 565556666677777777665     45999999999998764

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.23  E-value=6.2e-06  Score=82.39  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=79.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+.+|...+..+.+.  .+.    ..-++++|+|++.+.++ +.+ +.|...++...                    
T Consensus        51 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~~~~~~~s~-~~~~~~~~~~~~~~~--------------------  103 (175)
T cd01870          51 LALWDTAGQEDYDRLRPL--SYP----DTDVILMCFSIDSPDSL-ENIPEKWTPEVKHFC--------------------  103 (175)
T ss_pred             EEEEeCCCchhhhhcccc--ccC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC--------------------
Confidence            479999998666554433  221    12378899999999887 444 56766554310                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-H------HHHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-K------KRIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~------~d~Iq~~lR~fcl~yGA-  543 (890)
                                                       -++|+|||+||+|+...-... +      ........+.+|..+|. 
T Consensus       104 ---------------------------------~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~  150 (175)
T cd01870         104 ---------------------------------PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF  150 (175)
T ss_pred             ---------------------------------CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence                                             037999999999987421111 0      01224567889999986 


Q ss_pred             ceeEeccCChhhHHHHHHHHhhh
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      ..++||+|.+.|++.+++.|...
T Consensus       151 ~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         151 GYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             EEEEeccccCcCHHHHHHHHHHH
Confidence            79999999999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04135 Tc10 TC10 subfamily

Probab=98.23  E-value=6.6e-06  Score=82.09  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=80.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .++|+..|+..+..+-..  .+.    ..-++++|+|++.+.++ +.+ +.|...++.+ .                   
T Consensus        50 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~~ilv~~~~~~~s~-~~~~~~~~~~l~~~-~-------------------  102 (174)
T cd04135          50 LGLYDTAGQEDYDRLRPL--SYP----MTDVFLICFSVVNPASF-QNVKEEWVPELKEY-A-------------------  102 (174)
T ss_pred             EEEEeCCCcccccccccc--cCC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhh-C-------------------
Confidence            479999999766554444  221    12378889999999988 555 5787766542 1                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA-  543 (890)
                                                       .++|++|||||.|+..+-....       ...-+.....+|..+|+ 
T Consensus       103 ---------------------------------~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  149 (174)
T cd04135         103 ---------------------------------PNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH  149 (174)
T ss_pred             ---------------------------------CCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence                                             1378999999999864321111       12224567788889997 


Q ss_pred             ceeEeccCChhhHHHHHHHHhhhh
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ..+.||++++.|++.++..+.-.+
T Consensus       150 ~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         150 CYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             EEEEecCCcCCCHHHHHHHHHHHh
Confidence            588899999999999998876554

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01860 Rab5_related Rab5-related subfamily

Probab=98.23  E-value=4.2e-06  Score=82.36  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=82.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+.+|+..+..+...  .+.  +  .-++++|+|+++|.++ +.++.|+..++.+..                    
T Consensus        52 ~~i~D~~G~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  104 (163)
T cd01860          52 FEIWDTAGQERYRSLAPM--YYR--G--AAAAIVVYDITSEESF-EKAKSWVKELQRNAS--------------------  104 (163)
T ss_pred             EEEEeCCchHHHHHHHHH--Hhc--c--CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            589999998666655544  222  1  2379999999999987 888888888765321                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-.     .-...+.++|..+|...+-+|++.
T Consensus       105 --------------------------------~~~~iivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~  147 (163)
T cd01860         105 --------------------------------PNIIIALVGNKADLESKRQ-----VSTEEAQEYADENGLLFFETSAKT  147 (163)
T ss_pred             --------------------------------CCCeEEEEEECccccccCc-----CCHHHHHHHHHHcCCEEEEEECCC
Confidence                                            1489999999999874211     111245567888899999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++-++..|..++
T Consensus       148 ~~~v~~l~~~l~~~l  162 (163)
T cd01860         148 GENVNELFTEIAKKL  162 (163)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999987764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.22  E-value=5e-05  Score=79.80  Aligned_cols=166  Identities=19%  Similarity=0.205  Sum_probs=88.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CC---CCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND-TP---KPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSF  106 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~---kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~  106 (890)
                      .+|+|+|..||||||++|.+++... ..   ...++-...  ...+ ...+..+.|+||||....    ..+.... +.-
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~--~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l   77 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQ--KYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCL   77 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-E--EEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccc--eeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence            3799999999999999999999632 11   112222221  2222 223347999999995321    1222211 100


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .....+.+++++|+.++.. +  +.-...++.+.+....-                           .---++||.+..|
T Consensus        78 ~~~~~g~ha~llVi~~~r~-t--~~~~~~l~~l~~~FG~~---------------------------~~k~~ivvfT~~d  127 (212)
T PF04548_consen   78 SLCSPGPHAFLLVIPLGRF-T--EEDREVLELLQEIFGEE---------------------------IWKHTIVVFTHAD  127 (212)
T ss_dssp             HHTTT-ESEEEEEEETTB--S--HHHHHHHHHHHHHHCGG---------------------------GGGGEEEEEEEGG
T ss_pred             HhccCCCeEEEEEEecCcc-h--HHHHHHHHHHHHHccHH---------------------------HHhHhhHHhhhcc
Confidence            0001258899999999843 3  23333334444333220                           0123788889888


Q ss_pred             CCCCCCcchhhhh----HHHHHHHHHHcCCeEEEEecc------CCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIA----VQCLRYLAHVNGASLLFHSSL------DPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i----~~~lr~la~~~Ga~l~etSAK------~~~nId~Lk~~I~~~l  236 (890)
                      ...+.+  -...+    ...++.+....|..+...+.+      ....+.+|.+.|...+
T Consensus       128 ~~~~~~--~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv  185 (212)
T PF04548_consen  128 ELEDDS--LEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMV  185 (212)
T ss_dssp             GGTTTT--HHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccc--HHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence            764322  11122    245777888888888877766      2234555666666555

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.22  E-value=5.5e-06  Score=82.93  Aligned_cols=112  Identities=19%  Similarity=0.287  Sum_probs=79.2

Q ss_pred             eEEEEeCCCcccc-cccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~-~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .+||+.+|+..+. .+...  .+  .+.  -++++|+|++.|.++ +.+..|++.++.+...                  
T Consensus        53 ~~i~Dt~G~~~~~~~~~~~--~~--~~~--d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  107 (170)
T cd04115          53 VQLWDTAGQERFRKSMVQH--YY--RNV--HAVVFVYDVTNMASF-HSLPSWIEECEQHSLP------------------  107 (170)
T ss_pred             EEEEeCCChHHHHHhhHHH--hh--cCC--CEEEEEEECCCHHHH-HhHHHHHHHHHHhcCC------------------
Confidence            3799999985543 23332  11  121  268999999999998 8889999888764321                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -.+|+|||+||+|+...-.     .-......+|..++...+-||+|
T Consensus       108 ---------------------------------~~~p~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~  149 (170)
T cd04115         108 ---------------------------------NEVPRILVGNKCDLREQIQ-----VPTDLAQRFADAHSMPLFETSAK  149 (170)
T ss_pred             ---------------------------------CCCCEEEEEECccchhhcC-----CCHHHHHHHHHHcCCcEEEEecc
Confidence                                             1389999999999863211     11223456677788889999999


Q ss_pred             C---hhhHHHHHHHHhhhh
Q psy11649        552 D---PGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~---~~n~~~l~kyi~hr~  567 (890)
                      .   ..|++.++..+.+++
T Consensus       150 ~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         150 DPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             CCcCCCCHHHHHHHHHHHh
Confidence            8   889999998888764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04103 Centaurin_gamma Centaurin gamma

Probab=98.21  E-value=5.9e-06  Score=82.56  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=75.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+++|+...    .+   ..    ..-.+++|+|++.+.++ +.++.|+..++.+-..                   
T Consensus        49 l~i~D~~g~~~~----~~---~~----~~~~~ilv~d~~~~~sf-~~~~~~~~~i~~~~~~-------------------   97 (158)
T cd04103          49 LLIRDEGGAPDA----QF---AS----WVDAVIFVFSLENEASF-QTVYNLYHQLSSYRNI-------------------   97 (158)
T ss_pred             EEEEECCCCCch----hH---Hh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            689999999431    11   11    12278999999999999 7888898877653210                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K  551 (890)
                                                      -.+|++|||+|+|+... .  ....-....+.+|.+++ ...|-||+|
T Consensus        98 --------------------------------~~~piilvgnK~Dl~~~-~--~~~v~~~~~~~~~~~~~~~~~~e~SAk  142 (158)
T cd04103          98 --------------------------------SEIPLILVGTQDAISES-N--PRVIDDARARQLCADMKRCSYYETCAT  142 (158)
T ss_pred             --------------------------------CCCCEEEEeeHHHhhhc-C--CcccCHHHHHHHHHHhCCCcEEEEecC
Confidence                                            13789999999998421 0  11112234566777775 788899999


Q ss_pred             ChhhHHHHHHHHhhh
Q psy11649        552 DPGLVKRTRDILNHY  566 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr  566 (890)
                      .+.|++.+++.+..+
T Consensus       143 ~~~~i~~~f~~~~~~  157 (158)
T cd04103         143 YGLNVERVFQEAAQK  157 (158)
T ss_pred             CCCCHHHHHHHHHhh
Confidence            999999999887643

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.21  E-value=8.3e-06  Score=84.18  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=80.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+...  .+.    ..-++|+|+|++.+.++ +.++.|+..+.++...                   
T Consensus        49 l~i~D~~G~~~~~~~~~~--~~~----~ad~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  102 (198)
T cd04147          49 LDILDTSGSYSFPAMRKL--SIQ----NSDAFALVYAVDDPESF-EEVERLREEILEVKED-------------------  102 (198)
T ss_pred             EEEEECCCchhhhHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            579999998766665444  222    12379999999999988 7888887766543221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||.|+.........   +....++...+++..+.+|++.
T Consensus       103 --------------------------------~~~piilv~NK~Dl~~~~~~v~~---~~~~~~~~~~~~~~~~~~Sa~~  147 (198)
T cd04147         103 --------------------------------KFVPIVVVGNKADSLEEERQVPA---KDALSTVELDWNCGFVETSAKD  147 (198)
T ss_pred             --------------------------------CCCcEEEEEEccccccccccccH---HHHHHHHHhhcCCcEEEecCCC
Confidence                                            14899999999999753111111   1112223346778889999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|...+-
T Consensus       148 g~gv~~l~~~l~~~~~  163 (198)
T cd04147         148 NENVLEVFKELLRQAN  163 (198)
T ss_pred             CCCHHHHHHHHHHHhh
Confidence            9999999999988764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.20  E-value=1.4e-05  Score=83.56  Aligned_cols=58  Identities=12%  Similarity=-0.002  Sum_probs=38.1

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +.|.++|+||+|+..... .......+.++++  ..+++++++||+++.|++++.+++...
T Consensus       148 ~~a~iiv~NK~Dl~~~~~-~~~~~~~~~l~~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVG-FDVEKMKADAKKI--NPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccch-hhHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            468899999999963111 1111112222221  124889999999999999999988764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0461|consensus

Probab=98.17  E-value=4e-05  Score=84.23  Aligned_cols=175  Identities=14%  Similarity=0.193  Sum_probs=107.8

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC------CC---CCCCCccceeEEEEEEe----cccc--ceEEEEEEcCCCcch
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK------ND---TPKPTLALEYIYARKSG----KTVM--KDICHLWELGSGTSR   96 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~------~~---~~kptigvdY~f~~~~g----~~~~--k~~l~IwDlpG~~~~   96 (890)
                      .+.++++-++|--.||||||..+|..-      +.   +...++++|.-|.....    ....  ..++.+.|+||..++
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            455789999999999999999999762      11   22345556655544441    2211  127889999998554


Q ss_pred             hhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         97 LEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        97 ~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                         +... -.. -   =.|..++|+|+..-..- ...+..+  +.+.                               +.
T Consensus        84 ---IRtiigga-q---iiDlm~lviDv~kG~Qt-QtAEcLi--ig~~-------------------------------~c  122 (522)
T KOG0461|consen   84 ---IRTIIGGA-Q---IIDLMILVIDVQKGKQT-QTAECLI--IGEL-------------------------------LC  122 (522)
T ss_pred             ---HHHHHhhh-h---eeeeeeEEEehhccccc-ccchhhh--hhhh-------------------------------hc
Confidence               4333 100 1   16899999999985442 1222211  1111                               12


Q ss_pred             CcEEEEeecccCCCCCCcchhhh-hHHHHHHHHHHc-------CCeEEEEeccCC----CCHHHHHHHHHHHHhccCccc
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRI-AVQCLRYLAHVN-------GASLLFHSSLDP----GLVKRTRDILNHYAFSSHLAS  243 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~-i~~~lr~la~~~-------Ga~l~etSAK~~----~nId~Lk~~I~~~lf~~~~~~  243 (890)
                      .-.+||.||+|+..   +.+|+. +.....++++.+       +++++++||+.|    +.+.+|++.|...+|...   
T Consensus       123 ~klvvvinkid~lp---E~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~---  196 (522)
T KOG0461|consen  123 KKLVVVINKIDVLP---ENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK---  196 (522)
T ss_pred             cceEEEEecccccc---chhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC---
Confidence            34788999999863   223332 223333343332       278999999999    899999999999987533   


Q ss_pred             ccccCCCCccccc
Q psy11649        244 AVNFDYNKPIFVP  256 (890)
Q Consensus       244 ~~~~d~~kpl~Ip  256 (890)
                         -|...|+++.
T Consensus       197 ---Rd~~gpflm~  206 (522)
T KOG0461|consen  197 ---RDEEGPFLMA  206 (522)
T ss_pred             ---cCCCCCeEEE
Confidence               2555555443

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=98.16  E-value=5.9e-06  Score=84.23  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=74.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+++|...+..+...  .+.    ...++|+|+|.+.|.++ +.++.|+..+......                   
T Consensus        54 l~l~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~D~~~~~~~-~~~~~~~~~i~~~~~~-------------------  107 (183)
T cd04152          54 FHFWDVGGQEKLRPLWKS--YTR----CTDGIVFVVDSVDVERM-EEAKTELHKITRFSEN-------------------  107 (183)
T ss_pred             EEEEECCCcHhHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHhhhhc-------------------
Confidence            589999998655544333  111    13378999999998776 6666676655442221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH--HHHHHcCCceeEecc
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR--YLAHVNGASLLFHSS  550 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR--~fcl~yGAsL~ftS~  550 (890)
                                                      .++|++||+||+|+....+.+.   +.+.+.  .++-..+..++.+|+
T Consensus       108 --------------------------------~~~p~iiv~NK~D~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~SA  152 (183)
T cd04152         108 --------------------------------QGVPVLVLANKQDLPNALSVSE---VEKLLALHELSASTPWHVQPACA  152 (183)
T ss_pred             --------------------------------CCCcEEEEEECcCccccCCHHH---HHHHhCccccCCCCceEEEEeec
Confidence                                            2479999999999975444333   222221  111122356789999


Q ss_pred             CChhhHHHHHHHHhhhh
Q psy11649        551 LDPGLVKRTRDILNHYA  567 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~  567 (890)
                      +.+.|++.+++.|...+
T Consensus       153 ~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         153 IIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             ccCCCHHHHHHHHHHHH
Confidence            99999999888877554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG1707|consensus

Probab=98.16  E-value=1.4e-05  Score=93.11  Aligned_cols=159  Identities=18%  Similarity=0.152  Sum_probs=92.8

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS  107 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~  107 (890)
                      ....+.+++.++|.+++|||.|++.|+|+.  .++..+....|......... ....+-+-|++-. ..    ....+..
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g-~~k~LiL~ei~~~-~~----~~l~~ke  493 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKG-QQKYLILREIGED-DQ----DFLTSKE  493 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecc-ccceEEEeecCcc-cc----ccccCcc
Confidence            346678999999999999999999999962  24445555444432332221 1113444444322 00    0011111


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      -.   +|+++++||.++|.+| ..+...++. ..                              ....+|+++|++|+|+
T Consensus       494 ~~---cDv~~~~YDsS~p~sf-~~~a~v~~~-~~------------------------------~~~~~Pc~~va~K~dl  538 (625)
T KOG1707|consen  494 AA---CDVACLVYDSSNPRSF-EYLAEVYNK-YF------------------------------DLYKIPCLMVATKADL  538 (625)
T ss_pred             ce---eeeEEEecccCCchHH-HHHHHHHHH-hh------------------------------hccCCceEEEeecccc
Confidence            23   9999999999999998 333332221 11                              0136899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      -     +..+.......++|.++|++ .+-+|.+.... ..++.-|...
T Consensus       539 D-----e~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~  581 (625)
T KOG1707|consen  539 D-----EVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATM  581 (625)
T ss_pred             c-----hhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHh
Confidence            3     22222222238999999975 55556664222 4454444333

>PLN03108 Rab family protein; Provisional

Probab=98.15  E-value=6.5e-06  Score=86.09  Aligned_cols=133  Identities=15%  Similarity=0.173  Sum_probs=89.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+..|...+..+-..  .+.    ....+|+|+|++.|.++ +.+..|+..++.+..                    
T Consensus        57 l~l~Dt~G~~~~~~~~~~--~~~----~ad~~vlv~D~~~~~s~-~~l~~~~~~~~~~~~--------------------  109 (210)
T PLN03108         57 LQIWDTAGQESFRSITRS--YYR----GAAGALLVYDITRRETF-NHLASWLEDARQHAN--------------------  109 (210)
T ss_pred             EEEEeCCCcHHHHHHHHH--Hhc----cCCEEEEEEECCcHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999998665544332  111    12378999999999988 788888766543210                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+|+|++|+|+...-     ..-.....++|..+|...|.+|+++
T Consensus       110 --------------------------------~~~piiiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~e~Sa~~  152 (210)
T PLN03108        110 --------------------------------ANMTIMLIGNKCDLAHRR-----AVSTEEGEQFAKEHGLIFMEASAKT  152 (210)
T ss_pred             --------------------------------CCCcEEEEEECccCcccc-----CCCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            037899999999986421     1112344566778899999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCCC-CcceecccCCceEecCc
Q psy11649        553 PGLVKRTRDILNHYAFSSHL-ASAVNFDYNKPIFVPFG  589 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~~-~~~~~v~~~d~ifIPaG  589 (890)
                      +.|++.++..+...++.-.. .......+...+-+|.|
T Consensus       153 ~~~v~e~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (210)
T PLN03108        153 AQNVEEAFIKTAAKIYKKIQDGVFDVSNESYGIKVGYG  190 (210)
T ss_pred             CCCHHHHHHHHHHHHHHHhhhccccccccccccccccC
Confidence            99999999999988875321 12223334445555555

>cd04158 ARD1 ARD1 subfamily

Probab=98.14  E-value=5.7e-06  Score=82.95  Aligned_cols=118  Identities=16%  Similarity=0.122  Sum_probs=76.3

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --.++|+.+|...+..+...  .+.    ..-++++|+|.|.|.++ +.+..|+..+.....                  
T Consensus        43 ~~i~l~Dt~G~~~~~~~~~~--~~~----~ad~ii~V~D~s~~~s~-~~~~~~~~~~~~~~~------------------   97 (169)
T cd04158          43 LKFTIWDVGGKHKLRPLWKH--YYL----NTQAVVFVVDSSHRDRV-SEAHSELAKLLTEKE------------------   97 (169)
T ss_pred             EEEEEEECCCChhcchHHHH--Hhc----cCCEEEEEEeCCcHHHH-HHHHHHHHHHhcChh------------------
Confidence            34699999998766654433  122    22378999999999887 556666654432110                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH--HHHHHcCCceeEe
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR--YLAHVNGASLLFH  548 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR--~fcl~yGAsL~ft  548 (890)
                                 .                      -++|+||||||+|+....+.++   +++.++  .+|.......+.|
T Consensus        98 -----------~----------------------~~~piilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  141 (169)
T cd04158          98 -----------L----------------------RDALLLIFANKQDVAGALSVEE---MTELLSLHKLCCGRSWYIQGC  141 (169)
T ss_pred             -----------h----------------------CCCCEEEEEeCcCcccCCCHHH---HHHHhCCccccCCCcEEEEeC
Confidence                       0                      1368999999999974444333   333332  2221111245569


Q ss_pred             ccCChhhHHHHHHHHhhhhcC
Q psy11649        549 SSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       549 S~K~~~n~~~l~kyi~hr~fg  569 (890)
                      |+|.+.|++.++..|.+.+.+
T Consensus       142 Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         142 DARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             cCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999887665

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG1532|consensus

Probab=98.14  E-value=2.4e-05  Score=83.95  Aligned_cols=116  Identities=9%  Similarity=0.013  Sum_probs=69.7

Q ss_pred             EEEEEEcCCCcch-------hhHHhhhhccccccccCcEEEEEEeCC---CcCchHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy11649         84 ICHLWELGSGTSR-------LEVASLFSSFSLTAQSGFTLVLMLDLS---RLNSLWTEAETFLAKFRAIFESNESVREKR  153 (890)
Q Consensus        84 ~l~IwDlpG~~~~-------~~Li~~~r~~~~~~~~ad~IIIV~DlS---np~S~~~~L~~wlq~I~e~~~~ll~~~~~~  153 (890)
                      ..-|+|||||...       .-+...+     ....+.++++|+|..   +|.+|+.+...--..+.+            
T Consensus       117 ~~~liDTPGQIE~FtWSAsGsIIte~l-----ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk------------  179 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSASGSIITETL-----ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK------------  179 (366)
T ss_pred             CEEEEcCCCceEEEEecCCccchHhhH-----hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh------------
Confidence            5778999998642       1112222     111278999999954   477887777665443333            


Q ss_pred             cccccccccccccccccccCCCCcEEEEeecccCCCC-C------Ccchhhh---------hHHHHHHHHHH-----cCC
Q psy11649        154 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-L------EPNKKRI---------AVQCLRYLAHV-----NGA  212 (890)
Q Consensus       154 ~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-~------d~e~r~~---------i~~~lr~la~~-----~Ga  212 (890)
                                          ..+|+|+|.||+|+.+. +      |-|..+.         .....+.++..     .+.
T Consensus       180 --------------------tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~l  239 (366)
T KOG1532|consen  180 --------------------TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSL  239 (366)
T ss_pred             --------------------ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhC
Confidence                                15899999999998632 0      0001100         00111112111     245


Q ss_pred             eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        213 SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       213 ~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..+-+|+.+|.|.+.++..+...+
T Consensus       240 rtv~VSs~tG~G~ddf~~av~~~v  263 (366)
T KOG1532|consen  240 RTVGVSSVTGEGFDDFFTAVDESV  263 (366)
T ss_pred             ceEEEecccCCcHHHHHHHHHHHH
Confidence            688999999999999988876654

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=98.12  E-value=2e-05  Score=82.46  Aligned_cols=131  Identities=15%  Similarity=0.206  Sum_probs=80.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+.+|+..+..+...  -...    ..++|+|+|+|.+.++ +.|+.|+..++.+..+.              .+  
T Consensus        56 l~IwDtaG~e~~~~l~~~--~yr~----ad~iIlVyDvtn~~Sf-~~l~~W~~ei~~~~~~~--------------~~--  112 (202)
T cd04102          56 VELWDVGGSESVKSTRAV--FYNQ----VNGIILVHDLTNRKSS-QNLQRWSLEALNKDTFP--------------TG--  112 (202)
T ss_pred             EEEEecCCchhHHHHHHH--HhCc----CCEEEEEEECcChHHH-HHHHHHHHHHHHhhccc--------------cc--
Confidence            489999999887776555  2232    3389999999999999 99999999887654320              00  


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                            .....       .   ++ +......-.+||||||||+|+..+= .-+....-.....+|.+.||.-+.-+.+.
T Consensus       113 ------~~~~~-------~---~~-~~~~~~~~~~PiilVGnK~Dl~~~r-~~~~~~~~~~~~~ia~~~~~~~i~~~c~~  174 (202)
T cd04102         113 ------LLVTN-------G---DY-DSEQFGGNQIPLLVIGTKLDQIPEK-ESSGNLVLTARGFVAEQGNAEEINLNCTN  174 (202)
T ss_pred             ------ccccc-------c---cc-cccccCCCCceEEEEEECccchhhc-ccchHHHhhHhhhHHHhcCCceEEEecCC
Confidence                  00000       0   00 0001112358999999999997421 11112222335578999999988877664


Q ss_pred             hh-------hHHHHHHHHh
Q psy11649        553 PG-------LVKRTRDILN  564 (890)
Q Consensus       553 ~~-------n~~~l~kyi~  564 (890)
                      ..       |--+|.+|+.
T Consensus       175 ~~~~~~~~~~~~~~~~~~~  193 (202)
T cd04102         175 GRLLAAGSSDAVKLSRFFD  193 (202)
T ss_pred             cccccCCCccHHHHHHHHH
Confidence            32       4555555543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.11  E-value=1.7e-05  Score=85.50  Aligned_cols=121  Identities=12%  Similarity=0.095  Sum_probs=80.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ++||+..|+..+..+-..  .+.    ..-++|+|+|++.+.++ +.++.|++.+.+.-..    +..            
T Consensus        50 l~I~Dt~G~~~~~~~~~~--~~~----~ad~iIlVfdv~~~~Sf-~~i~~~~~~I~~~k~~----~~~------------  106 (247)
T cd04143          50 LDILDTSGNHPFPAMRRL--SIL----TGDVFILVFSLDNRESF-EEVCRLREQILETKSC----LKN------------  106 (247)
T ss_pred             EEEEECCCChhhhHHHHH--Hhc----cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhcc----ccc------------
Confidence            489999998665554333  111    22378999999999987 8889998887654211    000            


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                 ..-.+-.+|+|||+||+|+... .....+.+++.++   ...+...+.+|+|.
T Consensus       107 ---------------------------~~~~~~~~piIivgNK~Dl~~~-~~v~~~ei~~~~~---~~~~~~~~evSAkt  155 (247)
T cd04143         107 ---------------------------KTKENVKIPMVICGNKADRDFP-REVQRDEVEQLVG---GDENCAYFEVSAKK  155 (247)
T ss_pred             ---------------------------ccccCCCCcEEEEEECccchhc-cccCHHHHHHHHH---hcCCCEEEEEeCCC
Confidence                                       0001124899999999999742 1122233443333   23467899999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|...+
T Consensus       156 g~gI~elf~~L~~~~  170 (247)
T cd04143         156 NSNLDEMFRALFSLA  170 (247)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998643

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03118 Rab family protein; Provisional

Probab=98.11  E-value=1.8e-05  Score=82.59  Aligned_cols=115  Identities=15%  Similarity=0.133  Sum_probs=81.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+.+|+..+..+...  .+..    .-++|+|+|++.+.++ +.+. .|...++.+..                   
T Consensus        64 l~l~Dt~G~~~~~~~~~~--~~~~----~d~~vlv~D~~~~~sf-~~~~~~~~~~~~~~~~-------------------  117 (211)
T PLN03118         64 LTIWDTAGQERFRTLTSS--YYRN----AQGIILVYDVTRRETF-TNLSDVWGKEVELYST-------------------  117 (211)
T ss_pred             EEEEECCCchhhHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcC-------------------
Confidence            379999999776665444  2221    2379999999999987 4454 46655443111                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      .-++|+||||||+|+...-+.     -.+....++..+|...|.+|++
T Consensus       118 --------------------------------~~~~~~ilv~NK~Dl~~~~~i-----~~~~~~~~~~~~~~~~~e~SAk  160 (211)
T PLN03118        118 --------------------------------NQDCVKMLVGNKVDRESERDV-----SREEGMALAKEHGCLFLECSAK  160 (211)
T ss_pred             --------------------------------CCCCCEEEEEECccccccCcc-----CHHHHHHHHHHcCCEEEEEeCC
Confidence                                            013688999999999743111     1223445677889999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCC
Q psy11649        552 DPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~  570 (890)
                      ...|++.++.+|..+++..
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        161 TRENVEQCFEELALKIMEV  179 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999764

>cd04148 RGK RGK subfamily

Probab=98.10  E-value=1.4e-05  Score=84.48  Aligned_cols=113  Identities=17%  Similarity=0.093  Sum_probs=80.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|..  ..+...  .+..   ..-++++|+|++.+.++ +.++.|+..++.+..                    
T Consensus        52 l~i~Dt~G~~--~~~~~~--~~~~---~ad~iilV~d~td~~S~-~~~~~~~~~l~~~~~--------------------  103 (221)
T cd04148          52 LVVIDHWEQE--MWTEDS--CMQY---QGDAFVVVYSVTDRSSF-ERASELRIQLRRNRQ--------------------  103 (221)
T ss_pred             EEEEeCCCcc--hHHHhH--Hhhc---CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            4799999985  111111  1110   23478999999999987 788888876654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     ..++|+|||+||+|+...-     ..-.+..+.+|..+|+..+.||++.
T Consensus       104 -------------------------------~~~~piilV~NK~Dl~~~~-----~v~~~~~~~~a~~~~~~~~e~SA~~  147 (221)
T cd04148         104 -------------------------------LEDRPIILVGNKSDLARSR-----EVSVQEGRACAVVFDCKFIETSAGL  147 (221)
T ss_pred             -------------------------------CCCCCEEEEEEChhccccc-----eecHHHHHHHHHHcCCeEEEecCCC
Confidence                                           0148999999999986321     1112234567788899999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.+++.|...+..
T Consensus       148 ~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         148 QHNVDELLEGIVRQIRL  164 (221)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988763

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00066 G-alpha G protein alpha subunit

Probab=98.10  E-value=4.3e-05  Score=85.35  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=73.5

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCch------HHHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSL------WTEAETFLAKFRAIFESNESVREKRGSF  156 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~------~~~L~~wlq~I~e~~~~ll~~~~~~~~l  156 (890)
                      ..+.+||++|+...+..+..+    +  .++++||+|+|+++....      .+.+..-++.+...+..           
T Consensus       161 ~~~~~~DvgGq~~~R~kW~~~----f--~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~-----------  223 (317)
T cd00066         161 LKFRMFDVGGQRSERKKWIHC----F--EDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS-----------  223 (317)
T ss_pred             eEEEEECCCCCcccchhHHHH----h--CCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC-----------
Confidence            378899999999888888877    2  269999999999985321      01222222222222211           


Q ss_pred             ccccccccccccccccCCCCcEEEEeecccCCCC-------------CCc------chhhhhHHHHHHHHHH--cCCeEE
Q psy11649        157 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-------------LEP------NKKRIAVQCLRYLAHV--NGASLL  215 (890)
Q Consensus       157 ~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-------------~d~------e~r~~i~~~lr~la~~--~Ga~l~  215 (890)
                                    ..-.+.|++|++||.|++..             +..      +....+......+...  ..+-..
T Consensus       224 --------------~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~  289 (317)
T cd00066         224 --------------RWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPH  289 (317)
T ss_pred             --------------ccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence                          11136899999999997642             111      0111222222222211  123456


Q ss_pred             EEeccCCCCHHHHHHHHHHHHh
Q psy11649        216 FHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       216 etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +|+|.+..+++.+++.+...+.
T Consensus       290 ~t~a~Dt~~i~~vf~~v~~~i~  311 (317)
T cd00066         290 FTCATDTENIRFVFDAVKDIIL  311 (317)
T ss_pred             eccccchHHHHHHHHHHHHHHH
Confidence            7788888888888777777664

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>cd01893 Miro1 Miro1 subfamily

Probab=98.06  E-value=2.7e-05  Score=77.71  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=72.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .++|+..|.......+..  .+.    ..-++++|+|.+.|.++ +++ +.|+..++++-.                   
T Consensus        49 ~~i~Dt~G~~~~~~~~~~--~~~----~ad~~ilv~d~~~~~s~-~~~~~~~~~~i~~~~~-------------------  102 (166)
T cd01893          49 TTIVDTSSRPQDRANLAA--EIR----KANVICLVYSVDRPSTL-ERIRTKWLPLIRRLGV-------------------  102 (166)
T ss_pred             EEEEeCCCchhhhHHHhh--hcc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            479999998654443333  232    12268999999999998 665 578877654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-HHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-KKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                                                        ++|++|||||+|+....+.+ ..+.++..+.++..  -...+.||+
T Consensus       103 ----------------------------------~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa  146 (166)
T cd01893         103 ----------------------------------KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE--IETCVECSA  146 (166)
T ss_pred             ----------------------------------CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc--ccEEEEecc
Confidence                                              37899999999997543321 11222222222211  036899999


Q ss_pred             CChhhHHHHHHHHhhh
Q psy11649        551 LDPGLVKRTRDILNHY  566 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr  566 (890)
                      +++.|++.++..+.-.
T Consensus       147 ~~~~~v~~lf~~~~~~  162 (166)
T cd01893         147 KTLINVSEVFYYAQKA  162 (166)
T ss_pred             ccccCHHHHHHHHHHH
Confidence            9999999998877643

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.05  E-value=3.5e-05  Score=95.17  Aligned_cols=87  Identities=10%  Similarity=-0.009  Sum_probs=53.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccceeEEEEEEec-cccceEEEEEEcCCCcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALEYIYARKSGK-TVMKDICHLWELGSGTS   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~~~   95 (890)
                      -.+|+++|..++|||||+.+|+...+..                  .-+++++-........ ...+..++++||||...
T Consensus        20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d   99 (731)
T PRK07560         20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD   99 (731)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence            5689999999999999999998632110                  0011111000000000 11234799999999988


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCc
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS  127 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S  127 (890)
                      |...+...    ++  .+|++|+|+|......
T Consensus       100 f~~~~~~~----l~--~~D~avlVvda~~g~~  125 (731)
T PRK07560        100 FGGDVTRA----MR--AVDGAIVVVDAVEGVM  125 (731)
T ss_pred             hHHHHHHH----HH--hcCEEEEEEECCCCCC
Confidence            75444433    11  3899999999887544

>cd01892 Miro2 Miro2 subfamily

Probab=98.04  E-value=1.1e-05  Score=81.06  Aligned_cols=109  Identities=17%  Similarity=0.051  Sum_probs=73.9

Q ss_pred             eEEEEeCCCccccccccccccccccccc-ceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~-~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+.+|+.....+       ....+. .-++++|+|.+.|.++ +.+..|++.++    .                  
T Consensus        56 l~~~d~~g~~~~~~~-------~~~~~~~~d~~llv~d~~~~~s~-~~~~~~~~~~~----~------------------  105 (169)
T cd01892          56 LILREVGEDEVAILL-------NDAELAACDVACLVYDSSDPKSF-SYCAEVYKKYF----M------------------  105 (169)
T ss_pred             EEEEecCCccccccc-------chhhhhcCCEEEEEEeCCCHHHH-HHHHHHHHHhc----c------------------
Confidence            478999998544322       222222 2288999999999776 66666664321    0                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~  550 (890)
                                                      ...+|++||+||+|+...-.     ........||.++|+ ..+.+|+
T Consensus       106 --------------------------------~~~~p~iiv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa  148 (169)
T cd01892         106 --------------------------------LGEIPCLFVAAKADLDEQQQ-----RYEVQPDEFCRKLGLPPPLHFSS  148 (169)
T ss_pred             --------------------------------CCCCeEEEEEEccccccccc-----ccccCHHHHHHHcCCCCCEEEEe
Confidence                                            00379999999999863211     011123466778887 4699999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      +.+.|++.+++.|.-.++
T Consensus       149 ~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         149 KLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             ccCccHHHHHHHHHHHhh
Confidence            999999999999987665

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=98.04  E-value=1.7e-05  Score=78.57  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH  473 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~  473 (890)
                      ++|+.+|...+..+..-  .+..    .-.+++|+|.+.+.++ +.+..|+..++....                     
T Consensus        59 ~~~D~~g~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~---------------------  110 (169)
T cd04114          59 QIWDTAGQERFRSITQS--YYRS----ANALILTYDITCEESF-RCLPEWLREIEQYAN---------------------  110 (169)
T ss_pred             EEEECCCcHHHHHHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC---------------------
Confidence            79999998655544333  2222    2268999999999887 788888876644211                     


Q ss_pred             ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649        474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP  553 (890)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~  553 (890)
                                                     -++|+++|+||+|+...     .+..+...+.|........+.+|++.+
T Consensus       111 -------------------------------~~~~~i~v~NK~D~~~~-----~~i~~~~~~~~~~~~~~~~~~~Sa~~~  154 (169)
T cd04114         111 -------------------------------NKVITILVGNKIDLAER-----REVSQQRAEEFSDAQDMYYLETSAKES  154 (169)
T ss_pred             -------------------------------CCCeEEEEEECcccccc-----cccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence                                           13789999999998631     112223446677778889999999999


Q ss_pred             hhHHHHHHHHhhh
Q psy11649        554 GLVKRTRDILNHY  566 (890)
Q Consensus       554 ~n~~~l~kyi~hr  566 (890)
                      .|++.++.-|.-+
T Consensus       155 ~gv~~l~~~i~~~  167 (169)
T cd04114         155 DNVEKLFLDLACR  167 (169)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999887754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00157 Rho Rho (Ras homology) family

Probab=98.02  E-value=3e-05  Score=76.76  Aligned_cols=114  Identities=21%  Similarity=0.243  Sum_probs=80.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+.+|...+..+...  .+.    ..-++++|+|++.+.++-...+.|+..+..+.                     
T Consensus        50 l~~~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---------------------  102 (171)
T cd00157          50 LGLWDTAGQEEYDRLRPL--SYP----NTDVFLICFSVDSPSSFENVKTKWIPEIRHYC---------------------  102 (171)
T ss_pred             EEEEeCCCcccccccchh--hcC----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---------------------
Confidence            579999998655444333  111    23389999999999998677777766554411                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH------HHHHHHHHHHHHHHcCC-ce
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK------KRIAVQCLRYLAHVNGA-SL  545 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~------~d~Iq~~lR~fcl~yGA-sL  545 (890)
                                                      .++|++|||||+|+...-....      ...-....++++..+|. ..
T Consensus       103 --------------------------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  150 (171)
T cd00157         103 --------------------------------PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY  150 (171)
T ss_pred             --------------------------------CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence                                            0489999999999884322110      01124557788889998 89


Q ss_pred             eEeccCChhhHHHHHHHHhh
Q psy11649        546 LFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       546 ~ftS~K~~~n~~~l~kyi~h  565 (890)
                      +.+|++++.+++.++.+|..
T Consensus       151 ~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         151 MECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             EEeecCCCCCHHHHHHHHhh
Confidence            99999999999999988753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.02  E-value=4.9e-05  Score=84.07  Aligned_cols=146  Identities=18%  Similarity=0.149  Sum_probs=98.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--------------CC---------------------CCCCccceeEEEEEEec
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--------------DT---------------------PKPTLALEYIYARKSGK   78 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--------------~~---------------------~kptigvdY~f~~~~g~   78 (890)
                      ...+++.+|.--=||||||-||+...              ..                     ...++++|-.|.-..  
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs--   82 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS--   82 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc--
Confidence            35789999999999999999998631              00                     022344443331111  


Q ss_pred             cccceEEEEEEcCCCcch-hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHH--Hhhhhhhhhhccc
Q psy11649         79 TVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAI--FESNESVREKRGS  155 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~--~~~ll~~~~~~~~  155 (890)
                       ..+.++-|-||||++.| +++..-..       .||++|+++|.-.  .+       +++-++|  +..          
T Consensus        83 -T~KRkFIiADTPGHeQYTRNMaTGAS-------TadlAIlLVDAR~--Gv-------l~QTrRHs~I~s----------  135 (431)
T COG2895          83 -TEKRKFIIADTPGHEQYTRNMATGAS-------TADLAILLVDARK--GV-------LEQTRRHSFIAS----------  135 (431)
T ss_pred             -cccceEEEecCCcHHHHhhhhhcccc-------cccEEEEEEecch--hh-------HHHhHHHHHHHH----------
Confidence             23448999999999766 33332222       2899999999833  21       1112222  222          


Q ss_pred             cccccccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHH
Q psy11649        156 FEHFRTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVK  226 (890)
Q Consensus       156 l~~~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId  226 (890)
                                       .+|| -++++.||+||. +++++....|..+...||.++|.   .++++||..|.|+-
T Consensus       136 -----------------LLGIrhvvvAVNKmDLv-dy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         136 -----------------LLGIRHVVVAVNKMDLV-DYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             -----------------HhCCcEEEEEEeeeccc-ccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                             1243 367889999996 67777888899999999999985   49999999999885

>KOG0410|consensus

Probab=98.02  E-value=2e-05  Score=86.17  Aligned_cols=162  Identities=18%  Similarity=0.124  Sum_probs=95.7

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCc--cceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTL--ALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SS  105 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kpti--gvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~  105 (890)
                      .....-|.+||..|+|||||+++|++..-.++..+  ++|  .+...+....+..+-+.||-|..+-  ..++..|  +-
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLD--pT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATL  252 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLD--PTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATL  252 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheecc--chhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHH
Confidence            34456799999999999999999996321111111  122  1133344444557888999996432  3455555  32


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      +...  .+|+++-|.|+|+|.-- ...+..+..+.+.                     ..++    .+.-.-++=|=||+
T Consensus       253 eeVa--eadlllHvvDiShP~ae-~q~e~Vl~vL~~i---------------------gv~~----~pkl~~mieVdnki  304 (410)
T KOG0410|consen  253 EEVA--EADLLLHVVDISHPNAE-EQRETVLHVLNQI---------------------GVPS----EPKLQNMIEVDNKI  304 (410)
T ss_pred             HHHh--hcceEEEEeecCCccHH-HHHHHHHHHHHhc---------------------CCCc----HHHHhHHHhhcccc
Confidence            2222  59999999999999652 2222222211110                     0000    00112245578888


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |...++.+++             .++  .+.+||++|.|.+++.+.+......
T Consensus       305 D~e~~~~e~E-------------~n~--~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  305 DYEEDEVEEE-------------KNL--DVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ccccccCccc-------------cCC--ccccccccCccHHHHHHHHHHHhhh
Confidence            8754433222             233  4678999999999999999887643

>cd04157 Arl6 Arl6 subfamily

Probab=98.01  E-value=1.5e-05  Score=78.20  Aligned_cols=114  Identities=15%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+++|++.|...+..+...  .+.    ..-++|+|+|.+.+.++ +.++.|+..+..+..                   
T Consensus        46 ~~~l~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~D~~~~~~~-~~~~~~~~~~~~~~~-------------------   99 (162)
T cd04157          46 SFTAFDMSGQGKYRGLWEH--YYK----NIQGIIFVIDSSDRLRL-VVVKDELELLLNHPD-------------------   99 (162)
T ss_pred             EEEEEECCCCHhhHHHHHH--HHc----cCCEEEEEEeCCcHHHH-HHHHHHHHHHHcCcc-------------------
Confidence            3689999999777666555  222    22378999999999876 555566544322100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHH--HHcCCceeEec
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA--HVNGASLLFHS  549 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc--l~yGAsL~ftS  549 (890)
                                                    ..+.++|++||+||+|+......+.   +.+.+. ++  .......|.||
T Consensus       100 ------------------------------~~~~~~p~iiv~NK~Dl~~~~~~~~---~~~~l~-~~~~~~~~~~~~~~S  145 (162)
T cd04157         100 ------------------------------IKHRRVPILFFANKMDLPDALTAVK---ITQLLG-LENIKDKPWHIFASN  145 (162)
T ss_pred             ------------------------------cccCCCCEEEEEeCccccCCCCHHH---HHHHhC-CccccCceEEEEEee
Confidence                                          0013589999999999975433222   222111 11  11122367799


Q ss_pred             cCChhhHHHHHHHHhh
Q psy11649        550 SLDPGLVKRTRDILNH  565 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~h  565 (890)
                      ++.+.|++.++++|.+
T Consensus       146 a~~g~gv~~~~~~l~~  161 (162)
T cd04157         146 ALTGEGLDEGVQWLQA  161 (162)
T ss_pred             CCCCCchHHHHHHHhc
Confidence            9999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0079|consensus

Probab=97.99  E-value=6.6e-06  Score=80.65  Aligned_cols=127  Identities=17%  Similarity=0.253  Sum_probs=95.1

Q ss_pred             eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +-||+-.|+.-++..+.-       -. ..-.|++|-|.|+-.++ ....+|++.+|..-++                  
T Consensus        59 LqIwDtAGqErFrtitst-------yyrgthgv~vVYDVTn~ESF-~Nv~rWLeei~~ncds------------------  112 (198)
T KOG0079|consen   59 LQIWDTAGQERFRTITST-------YYRGTHGVIVVYDVTNGESF-NNVKRWLEEIRNNCDS------------------  112 (198)
T ss_pred             EEEeecccHHHHHHHHHH-------HccCCceEEEEEECcchhhh-HhHHHHHHHHHhcCcc------------------
Confidence            479999999666654443       22 22368899999999998 8999999888763332                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                         +|=|+||+|+|.-     |.+-.+..-+|.||++||-.||=||+|
T Consensus       113 -----------------------------------v~~vLVGNK~d~~-----~RrvV~t~dAr~~A~~mgie~FETSaK  152 (198)
T KOG0079|consen  113 -----------------------------------VPKVLVGNKNDDP-----ERRVVDTEDARAFALQMGIELFETSAK  152 (198)
T ss_pred             -----------------------------------ccceecccCCCCc-----cceeeehHHHHHHHHhcCchheehhhh
Confidence                                               4558999999964     455566778999999999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCCCCcceecccCCceE
Q psy11649        552 DPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIF  585 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~if  585 (890)
                      |+.|+.-.+..|...............-..+++-
T Consensus       153 e~~NvE~mF~cit~qvl~~k~r~~~~~~r~~~~~  186 (198)
T KOG0079|consen  153 ENENVEAMFHCITKQVLQAKLRESVEQQRADAVS  186 (198)
T ss_pred             hcccchHHHHHHHHHHHHHHHhhcHHHHhhcceE
Confidence            9999999888887665554444444444444443

>cd04151 Arl1 Arl1 subfamily

Probab=97.99  E-value=2e-05  Score=77.75  Aligned_cols=111  Identities=19%  Similarity=0.155  Sum_probs=69.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+-..  .+.    ...++|+|+|.+.+.++-...+.|...++.. .                    
T Consensus        45 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~--------------------   97 (158)
T cd04151          45 FQVWDLGGQTSIRPYWRC--YYS----NTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-E--------------------   97 (158)
T ss_pred             EEEEECCCCHHHHHHHHH--Hhc----CCCEEEEEEECCCHHHHHHHHHHHHHHHhch-h--------------------
Confidence            589999998665554332  122    2337899999999876633323222221110 0                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHH-HHHHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~-fcl~yGAsL~ftS~K  551 (890)
                                                     ..++|++||+||+|+......   +.+++.++. .....+...|.+|++
T Consensus        98 -------------------------------~~~~piiiv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~Sa~  143 (158)
T cd04151          98 -------------------------------LKGAVLLVFANKQDMPGALSE---AEISEKLGLSELKDRTWSIFKTSAI  143 (158)
T ss_pred             -------------------------------hcCCcEEEEEeCCCCCCCCCH---HHHHHHhCccccCCCcEEEEEeecc
Confidence                                           014799999999999743222   223333321 122345579999999


Q ss_pred             ChhhHHHHHHHHh
Q psy11649        552 DPGLVKRTRDILN  564 (890)
Q Consensus       552 ~~~n~~~l~kyi~  564 (890)
                      ++.|++.++.+|.
T Consensus       144 ~~~gi~~l~~~l~  156 (158)
T cd04151         144 KGEGLDEGMDWLV  156 (158)
T ss_pred             CCCCHHHHHHHHh
Confidence            9999999998875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.98  E-value=5e-05  Score=95.06  Aligned_cols=113  Identities=12%  Similarity=0.071  Sum_probs=69.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCC-------------C-----CCCccce-----eEEEEEE-------e-ccccce
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDT-------------P-----KPTLALE-----YIYARKS-------G-KTVMKD   83 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~-------------~-----kptigvd-----Y~f~~~~-------g-~~~~k~   83 (890)
                      -.+|+|+|..++|||||+.+|+...+.             +     ..++++.     +.|....       . ......
T Consensus        19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY   98 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence            568999999999999999999863210             0     0111111     1110000       0 011133


Q ss_pred             EEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  162 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~  162 (890)
                      .++++||||+..|..-.... +       .+|++|+|+|.+..-.. .....|.+ +                       
T Consensus        99 ~inliDtPGh~dF~~e~~~al~-------~~D~ailVvda~~Gv~~-~t~~~~~~-~-----------------------  146 (843)
T PLN00116         99 LINLIDSPGHVDFSSEVTAALR-------ITDGALVVVDCIEGVCV-QTETVLRQ-A-----------------------  146 (843)
T ss_pred             EEEEECCCCHHHHHHHHHHHHh-------hcCEEEEEEECCCCCcc-cHHHHHHH-H-----------------------
Confidence            78999999998774444333 3       38999999999986443 12222322 1                       


Q ss_pred             ccccccccccCCCCcEEEEeecccCC
Q psy11649        163 DEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       163 ~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                               ...++|++++.||+|+.
T Consensus       147 ---------~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116        147 ---------LGERIRPVLTVNKMDRC  163 (843)
T ss_pred             ---------HHCCCCEEEEEECCccc
Confidence                     11268999999999985

>PRK00098 GTPase RsgA; Reviewed

Probab=97.97  E-value=3e-05  Score=85.86  Aligned_cols=84  Identities=18%  Similarity=0.100  Sum_probs=62.6

Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|.+++|+|+++|......+..|+..+..                                .++|+++|+||+|+..  
T Consensus        80 niD~vllV~d~~~p~~~~~~idr~L~~~~~--------------------------------~~ip~iIVlNK~DL~~--  125 (298)
T PRK00098         80 NVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--------------------------------NGIKPIIVLNKIDLLD--  125 (298)
T ss_pred             cCCEEEEEEECCCCCCCHHHHHHHHHHHHH--------------------------------CCCCEEEEEEhHHcCC--
Confidence            699999999999987764455777754332                                2689999999999952  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                         .... .....+....+|.+++++||+++.|+++|++.+.
T Consensus       126 ---~~~~-~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        126 ---DLEE-ARELLALYRAIGYDVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             ---CHHH-HHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence               1221 2234445566788999999999999999988764

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.97  E-value=6.3e-05  Score=83.29  Aligned_cols=59  Identities=15%  Similarity=0.056  Sum_probs=38.5

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHH----HHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQ----CLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~----~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+|.++|+||+|+....   .......    .+..+...   ++.+++++||+++.|++++.+.|.+..
T Consensus       172 ~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       172 EIADIYVVNKADGEGAT---NVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             hhccEEEEEcccccchh---HHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            47889999999986311   1111111    11222121   234689999999999999999998764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd04154 Arl2 Arl2 subfamily

Probab=97.95  E-value=2.6e-05  Score=78.31  Aligned_cols=113  Identities=16%  Similarity=0.102  Sum_probs=71.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+++|+++|+..+..+...  .+.    ..-.+++|+|.+.+.++ +.+..|+..+..+..                   
T Consensus        59 ~l~l~D~~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  112 (173)
T cd04154          59 KLNIWDVGGQKTLRPYWRN--YFE----STDALIWVVDSSDRLRL-DDCKRELKELLQEER-------------------  112 (173)
T ss_pred             EEEEEECCCCHHHHHHHHH--HhC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHhChh-------------------
Confidence            3589999999665544332  122    22378999999999876 555555543321000                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS~  550 (890)
                                                      ..++|++|||||+|+......   +.+++.+... +...+...|.||+
T Consensus       113 --------------------------------~~~~p~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa  157 (173)
T cd04154         113 --------------------------------LAGATLLILANKQDLPGALSE---EEIREALELDKISSHHWRIQPCSA  157 (173)
T ss_pred             --------------------------------hcCCCEEEEEECcccccCCCH---HHHHHHhCccccCCCceEEEeccC
Confidence                                            014799999999999753322   2233222110 1235668999999


Q ss_pred             CChhhHHHHHHHHhh
Q psy11649        551 LDPGLVKRTRDILNH  565 (890)
Q Consensus       551 K~~~n~~~l~kyi~h  565 (890)
                      |.+.|++.++.+|..
T Consensus       158 ~~g~gi~~l~~~l~~  172 (173)
T cd04154         158 VTGEGLLQGIDWLVD  172 (173)
T ss_pred             CCCcCHHHHHHHHhc
Confidence            999999999988753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04149 Arf6 Arf6 subfamily

Probab=97.93  E-value=2.2e-05  Score=79.02  Aligned_cols=111  Identities=14%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+.+|+..+..+...  .+..    .-++|+|+|.+.|.++ +.+..|+..+.   ..                  
T Consensus        54 ~~~l~Dt~G~~~~~~~~~~--~~~~----a~~ii~v~D~t~~~s~-~~~~~~~~~~~---~~------------------  105 (168)
T cd04149          54 KFNVWDVGGQDKIRPLWRH--YYTG----TQGLIFVVDSADRDRI-DEARQELHRII---ND------------------  105 (168)
T ss_pred             EEEEEECCCCHHHHHHHHH--Hhcc----CCEEEEEEeCCchhhH-HHHHHHHHHHh---cC------------------
Confidence            3599999999766655443  2232    2389999999999776 44444333221   11                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHH--HHcCCceeEec
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA--HVNGASLLFHS  549 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc--l~yGAsL~ftS  549 (890)
                              ...                      -++|+||||||+|+....+.++   +++.+. ++  ...+...+.||
T Consensus       106 --------~~~----------------------~~~piilv~NK~Dl~~~~~~~~---i~~~~~-~~~~~~~~~~~~~~S  151 (168)
T cd04149         106 --------REM----------------------RDALLLVFANKQDLPDAMKPHE---IQEKLG-LTRIRDRNWYVQPSC  151 (168)
T ss_pred             --------Hhh----------------------cCCcEEEEEECcCCccCCCHHH---HHHHcC-CCccCCCcEEEEEee
Confidence                    000                      1479999999999874333332   222221 11  11223578899


Q ss_pred             cCChhhHHHHHHHHh
Q psy11649        550 SLDPGLVKRTRDILN  564 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~  564 (890)
                      +|.+.|++.++..|.
T Consensus       152 Ak~g~gv~~~~~~l~  166 (168)
T cd04149         152 ATSGDGLYEGLTWLS  166 (168)
T ss_pred             CCCCCChHHHHHHHh
Confidence            999999999988774

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=97.91  E-value=4e-05  Score=77.60  Aligned_cols=114  Identities=11%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+++|+.+|+..+..+.+..  +.  +  .-++|+|+|.|.|.++ +....|+..+...-.                   
T Consensus        58 ~l~l~D~~G~~~~~~~~~~~--~~--~--ad~ii~v~D~t~~~s~-~~~~~~l~~~~~~~~-------------------  111 (175)
T smart00177       58 SFTVWDVGGQDKIRPLWRHY--YT--N--TQGLIFVVDSNDRDRI-DEAREELHRMLNEDE-------------------  111 (175)
T ss_pred             EEEEEECCCChhhHHHHHHH--hC--C--CCEEEEEEECCCHHHH-HHHHHHHHHHhhCHh-------------------
Confidence            35899999997777655441  22  1  2289999999999876 444444433221000                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS~  550 (890)
                                .                      -++|++|||||+|+....+.++   |.+.+... +....+..+.||+
T Consensus       112 ----------~----------------------~~~piilv~NK~Dl~~~~~~~~---i~~~~~~~~~~~~~~~~~~~Sa  156 (175)
T smart00177      112 ----------L----------------------RDAVILVFANKQDLPDAMKAAE---ITEKLGLHSIRDRNWYIQPTCA  156 (175)
T ss_pred             ----------h----------------------cCCcEEEEEeCcCcccCCCHHH---HHHHhCccccCCCcEEEEEeeC
Confidence                      0                      1379999999999864433222   22222111 1122334556999


Q ss_pred             CChhhHHHHHHHHhhh
Q psy11649        551 LDPGLVKRTRDILNHY  566 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr  566 (890)
                      |.+.|++.+++.|.-.
T Consensus       157 ~~g~gv~e~~~~l~~~  172 (175)
T smart00177      157 TSGDGLYEGLTWLSNN  172 (175)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999988643

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=97.90  E-value=3.5e-05  Score=77.73  Aligned_cols=114  Identities=15%  Similarity=0.121  Sum_probs=72.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+++|+..+..+...  .+.    ..-++|+|+|.|.+.++ ...+.|+..+-.+..                   
T Consensus        60 ~~~l~D~~G~~~~~~~~~~--~~~----~~d~vi~V~D~s~~~~~-~~~~~~l~~~~~~~~-------------------  113 (174)
T cd04153          60 RFLMWDIGGQESLRSSWNT--YYT----NTDAVILVIDSTDRERL-PLTKEELYKMLAHED-------------------  113 (174)
T ss_pred             EEEEEECCCCHHHHHHHHH--Hhh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHhchh-------------------
Confidence            3589999999766655443  222    12378999999999776 333333332211100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~  550 (890)
                                                      ...+|++|||||+|+....+.+   .|++.+. ..+...+..++.+|+
T Consensus       114 --------------------------------~~~~p~viv~NK~Dl~~~~~~~---~i~~~l~~~~~~~~~~~~~~~SA  158 (174)
T cd04153         114 --------------------------------LRKAVLLVLANKQDLKGAMTPA---EISESLGLTSIRDHTWHIQGCCA  158 (174)
T ss_pred             --------------------------------hcCCCEEEEEECCCCCCCCCHH---HHHHHhCcccccCCceEEEeccc
Confidence                                            0137999999999997544333   2333332 112234557899999


Q ss_pred             CChhhHHHHHHHHhhh
Q psy11649        551 LDPGLVKRTRDILNHY  566 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr  566 (890)
                      +++.|++.++++|..|
T Consensus       159 ~~g~gi~e~~~~l~~~  174 (174)
T cd04153         159 LTGEGLPEGLDWIASR  174 (174)
T ss_pred             CCCCCHHHHHHHHhcC
Confidence            9999999999998643

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=97.90  E-value=3.1e-05  Score=76.57  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=73.3

Q ss_pred             CceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649        390 ADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  469 (890)
Q Consensus       390 kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~  469 (890)
                      +--..+|+.+|+..+..+...  .+.    ..-.+++|+|.+.+.++ +.+..|+..+..+..                 
T Consensus        49 ~~~~~l~Dt~G~~~~~~~~~~--~~~----~~~~~v~vvd~~~~~~~-~~~~~~~~~~~~~~~-----------------  104 (167)
T cd04160          49 NARLKFWDLGGQESLRSLWDK--YYA----ECHAIIYVIDSTDRERF-EESKSALEKVLRNEA-----------------  104 (167)
T ss_pred             CEEEEEEECCCChhhHHHHHH--HhC----CCCEEEEEEECchHHHH-HHHHHHHHHHHhChh-----------------
Confidence            344589999998665544333  111    12279999999998765 555555544432111                 


Q ss_pred             ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH---HHHcCCcee
Q psy11649        470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL---AHVNGASLL  546 (890)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f---cl~yGAsL~  546 (890)
                                                        ..++|++||+||+|+....+.+   .+...+..+   .-..+...+
T Consensus       105 ----------------------------------~~~~p~ilv~NK~D~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  147 (167)
T cd04160         105 ----------------------------------LEGVPLLILANKQDLPDALSVE---EIKEVFQDKAEEIGRRDCLVL  147 (167)
T ss_pred             ----------------------------------hcCCCEEEEEEccccccCCCHH---HHHHHhccccccccCCceEEE
Confidence                                              0148999999999986543322   233333222   123567899


Q ss_pred             EeccCChhhHHHHHHHHhh
Q psy11649        547 FHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       547 ftS~K~~~n~~~l~kyi~h  565 (890)
                      .+|++.+.+++.+.++|.-
T Consensus       148 ~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         148 PVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EeeCCCCcCHHHHHHHHhc
Confidence            9999999999999988853

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=97.89  E-value=3.8e-05  Score=75.37  Aligned_cols=115  Identities=17%  Similarity=0.122  Sum_probs=74.7

Q ss_pred             CceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649        390 ADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  469 (890)
Q Consensus       390 kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~  469 (890)
                      +....+|+++|...+..+...  .+..    ..++++|+|.+.|.++ ..+..|+..+..+..                 
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~--~~~~----~~~~i~v~D~~~~~~~-~~~~~~~~~~~~~~~-----------------   97 (158)
T cd00878          42 NVSFTVWDVGGQDKIRPLWKH--YYEN----TNGIIFVVDSSDRERI-EEAKEELHKLLNEEE-----------------   97 (158)
T ss_pred             CEEEEEEECCCChhhHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhCcc-----------------
Confidence            345689999999776655443  2222    2478899999999877 444444443322110                 


Q ss_pred             ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEe
Q psy11649        470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFH  548 (890)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ft  548 (890)
                                                        ..++|++||+||+|+...-+   .+.+.+.++.. +.......+.+
T Consensus        98 ----------------------------------~~~~piiiv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  140 (158)
T cd00878          98 ----------------------------------LKGVPLLIFANKQDLPGALS---VSELIEKLGLEKILGRRWHIQPC  140 (158)
T ss_pred             ----------------------------------cCCCcEEEEeeccCCccccC---HHHHHHhhChhhccCCcEEEEEe
Confidence                                              12479999999999975332   22333333332 23334578999


Q ss_pred             ccCChhhHHHHHHHHhh
Q psy11649        549 SSLDPGLVKRTRDILNH  565 (890)
Q Consensus       549 S~K~~~n~~~l~kyi~h  565 (890)
                      |++++.|++.+++.|..
T Consensus       141 Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         141 SAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             eCCCCCCHHHHHHHHhh
Confidence            99999999999988863

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00416 elongation factor 2; Provisional

Probab=97.88  E-value=5.6e-05  Score=94.53  Aligned_cols=114  Identities=14%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC------------------CCCccce-----eEEEEEE--eccccceEEEEEE
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP------------------KPTLALE-----YIYARKS--GKTVMKDICHLWE   89 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~------------------kptigvd-----Y~f~~~~--g~~~~k~~l~IwD   89 (890)
                      ..+|+|+|..++|||||+.+|+...+..                  ..+++++     +.+....  +....+..+++.|
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD   98 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID   98 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence            4589999999999999999998632110                  0011111     0010000  0011123799999


Q ss_pred             cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      |||...|..-+...    ++  .+|++|+|+|.+..-.. ....-|.+ +                              
T Consensus        99 tPG~~~f~~~~~~a----l~--~~D~ailVvda~~g~~~-~t~~~~~~-~------------------------------  140 (836)
T PTZ00416         99 SPGHVDFSSEVTAA----LR--VTDGALVVVDCVEGVCV-QTETVLRQ-A------------------------------  140 (836)
T ss_pred             CCCHHhHHHHHHHH----Hh--cCCeEEEEEECCCCcCc-cHHHHHHH-H------------------------------
Confidence            99987764433333    11  49999999999885442 12222221 1                              


Q ss_pred             cccCCCCcEEEEeecccCC
Q psy11649        170 LIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       170 li~~l~IPiIVVgNK~Dl~  188 (890)
                        ...++|++++.||+|+.
T Consensus       141 --~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416        141 --LQERIRPVLFINKVDRA  157 (836)
T ss_pred             --HHcCCCEEEEEEChhhh
Confidence              11258999999999985

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=97.88  E-value=3.4e-05  Score=77.22  Aligned_cols=109  Identities=20%  Similarity=0.088  Sum_probs=70.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+...  .+..    .-++|+|+|.+.+.++ +.++.|+..+..   .                   
T Consensus        46 l~i~Dt~G~~~~~~~~~~--~~~~----ad~ii~V~D~t~~~s~-~~~~~~l~~~~~---~-------------------   96 (164)
T cd04162          46 MELLEIGGSQNLRKYWKR--YLSG----SQGLIFVVDSADSERL-PLARQELHQLLQ---H-------------------   96 (164)
T ss_pred             EEEEECCCCcchhHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHh---C-------------------
Confidence            589999999665544333  1221    2268899999999876 555666443321   0                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHH--HHHHHHHcCCceeEecc
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC--LRYLAHVNGASLLFHSS  550 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~--lR~fcl~yGAsL~ftS~  550 (890)
                                                     .-++|++|||+|+|+......+   .|.+.  +..+|...|..+|-||+
T Consensus        97 -------------------------------~~~~piilv~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~Sa  142 (164)
T cd04162          97 -------------------------------PPDLPLVVLANKQDLPAARSVQ---EIHKELELEPIARGRRWILQGTSL  142 (164)
T ss_pred             -------------------------------CCCCcEEEEEeCcCCcCCCCHH---HHHHHhCChhhcCCCceEEEEeee
Confidence                                           0148999999999986543222   22222  45677778888888999


Q ss_pred             CC------hhhHHHHHHHHh
Q psy11649        551 LD------PGLVKRTRDILN  564 (890)
Q Consensus       551 K~------~~n~~~l~kyi~  564 (890)
                      |.      ..+++.++..+.
T Consensus       143 ~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         143 DDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             cCCCChhHHHHHHHHHHHHh
Confidence            99      555555555443

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.85  E-value=0.00038  Score=79.51  Aligned_cols=153  Identities=12%  Similarity=0.097  Sum_probs=94.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCC----------------CccceeEEEEEEeccccceEEEEEEcCCCcchhh
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKP----------------TLALEYIYARKSGKTVMKDICHLWELGSGTSRLE   98 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kp----------------tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~   98 (890)
                      -.+|++|-----|||||+.+|+.+.+....                .-|+.. ..+.+.....+.+++|.||||+..|-.
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITI-LaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITI-LAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEE-EeccceeecCCeEEEEecCCCcCCccc
Confidence            467999999999999999999985322111                111110 112222233345999999999988744


Q ss_pred             HHhhh-hccccccccCcEEEEEEeCCC---cCc-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         99 VASLF-SSFSLTAQSGFTLVLMLDLSR---LNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        99 Li~~~-r~~~~~~~~ad~IIIV~DlSn---p~S-~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      -+... .-       .|++++++|...   |.+ |  -+.       +.++                             
T Consensus        84 EVERvl~M-------VDgvlLlVDA~EGpMPQTrF--Vlk-------KAl~-----------------------------  118 (603)
T COG1217          84 EVERVLSM-------VDGVLLLVDASEGPMPQTRF--VLK-------KALA-----------------------------  118 (603)
T ss_pred             hhhhhhhh-------cceEEEEEEcccCCCCchhh--hHH-------HHHH-----------------------------
Confidence            33333 21       689999999988   332 2  222       2221                             


Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHH------HcCCeEEEEeccCCC----------CHHHHHHHHHHHH
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH------VNGASLLFHSSLDPG----------LVKRTRDILNHYA  236 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~------~~Ga~l~etSAK~~~----------nId~Lk~~I~~~l  236 (890)
                      .+.+-|||.||+|....   ....++.+...-|..      ++.++++|.|++.|.          +++-|++.|...+
T Consensus       119 ~gL~PIVVvNKiDrp~A---rp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         119 LGLKPIVVINKIDRPDA---RPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             cCCCcEEEEeCCCCCCC---CHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            26778999999998421   112333333333332      456789999998764          5666777776664

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=97.84  E-value=3.8e-05  Score=75.42  Aligned_cols=113  Identities=17%  Similarity=0.095  Sum_probs=71.9

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      ..+++|+++|...+..+...  .+..    .-++|+|+|.++|.++ +.+..|+..+..+-.                  
T Consensus        44 ~~l~i~D~~G~~~~~~~~~~--~~~~----~~~iv~v~D~~~~~~~-~~~~~~~~~~~~~~~------------------   98 (160)
T cd04156          44 LSLTVWDVGGQEKMRTVWKC--YLEN----TDGLVYVVDSSDEARL-DESQKELKHILKNEH------------------   98 (160)
T ss_pred             eEEEEEECCCCHhHHHHHHH--Hhcc----CCEEEEEEECCcHHHH-HHHHHHHHHHHhchh------------------
Confidence            35789999998655544332  1221    2378999999999866 444444433321000                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH--HHHHHHcCCceeEe
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL--RYLAHVNGASLLFH  548 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l--R~fcl~yGAsL~ft  548 (890)
                                                       ..++|++||+||+|+......   +.+...+  ..+|...+...+-|
T Consensus        99 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~  142 (160)
T cd04156          99 ---------------------------------IKGVPVVLLANKQDLPGALTA---EEITRRFKLKKYCSDRDWYVQPC  142 (160)
T ss_pred             ---------------------------------hcCCCEEEEEECcccccCcCH---HHHHHHcCCcccCCCCcEEEEec
Confidence                                             014799999999998633222   2232222  34555455567889


Q ss_pred             ccCChhhHHHHHHHHh
Q psy11649        549 SSLDPGLVKRTRDILN  564 (890)
Q Consensus       549 S~K~~~n~~~l~kyi~  564 (890)
                      |+|.+.+++.+++.|.
T Consensus       143 Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         143 SAVTGEGLAEAFRKLA  158 (160)
T ss_pred             ccccCCChHHHHHHHh
Confidence            9999999999998874

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.84  E-value=6.9e-05  Score=82.52  Aligned_cols=83  Identities=17%  Similarity=0.125  Sum_probs=62.1

Q ss_pred             cCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      ++|.+++|+|++++. ++ ..+++|+..+..                                .++|+++|+||+|+..+
T Consensus        78 nvD~vllV~d~~~p~~s~-~~ldr~L~~~~~--------------------------------~~ip~iIVlNK~DL~~~  124 (287)
T cd01854          78 NVDQLVIVVSLNEPFFNP-RLLDRYLVAAEA--------------------------------AGIEPVIVLTKADLLDD  124 (287)
T ss_pred             eCCEEEEEEEcCCCCCCH-HHHHHHHHHHHH--------------------------------cCCCEEEEEEHHHCCCh
Confidence            699999999999998 65 677778764432                                25899999999999631


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                           ..  ...........|.+++++||+++.|+++|++.|..
T Consensus       125 -----~~--~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         125 -----EE--EELELVEALALGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -----HH--HHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence                 11  11223334557889999999999999999887754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG0094|consensus

Probab=97.83  E-value=0.00013  Score=74.99  Aligned_cols=142  Identities=17%  Similarity=0.199  Sum_probs=100.1

Q ss_pred             cccCCCCceeeccccccccccccCcccccCce-eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHH
Q psy11649        361 VNFDYNKPIFVPFGTDSVASIEGTTQYVTADI-CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTE  439 (890)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kdi-~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~s  439 (890)
                      +-..|+--|-+-|=..-| .++      +..| +-+|+-.|+..++-|+..  =+..    .+++|+|.||+.-.++ ++
T Consensus        47 fd~~YqATIGiDFlskt~-~l~------d~~vrLQlWDTAGQERFrslips--Y~Rd----s~vaviVyDit~~~Sf-e~  112 (221)
T KOG0094|consen   47 FDNTYQATIGIDFLSKTM-YLE------DRTVRLQLWDTAGQERFRSLIPS--YIRD----SSVAVIVYDITDRNSF-EN  112 (221)
T ss_pred             hcccccceeeeEEEEEEE-EEc------CcEEEEEEEecccHHHHhhhhhh--hccC----CeEEEEEEeccccchH-HH
Confidence            344566666665543333 222      2333 379999999888877665  2222    3478999999999999 99


Q ss_pred             HHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccc
Q psy11649        440 AETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLF  519 (890)
Q Consensus       440 L~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~  519 (890)
                      ..+|+.-++.-...                                            +       ++=|++||+|.|+.
T Consensus       113 t~kWi~dv~~e~gs--------------------------------------------~-------~viI~LVGnKtDL~  141 (221)
T KOG0094|consen  113 TSKWIEDVRRERGS--------------------------------------------D-------DVIIFLVGNKTDLS  141 (221)
T ss_pred             HHHHHHHHHhccCC--------------------------------------------C-------ceEEEEEccccccc
Confidence            99999887762221                                            0       25579999999998


Q ss_pred             cCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCCCC
Q psy11649        520 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHL  572 (890)
Q Consensus       520 ~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~  572 (890)
                      .   +.+  +-+.---+.|..+||--+=||+|.+-|+..|+.=|-..+||..-
T Consensus       142 d---krq--vs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  142 D---KRQ--VSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             c---hhh--hhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            3   111  11111126788999988889999999999999999999999654

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.78  E-value=8.7e-05  Score=73.47  Aligned_cols=54  Identities=19%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      +|+|||+||.|+...   +..+.    ++.++...+...+.||+|.+.|++.++++|..++
T Consensus       114 ~pvilv~NK~Dl~~~---~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         114 KPVIVVLNKIDLLTF---EDLSE----IEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             CCeEEEEEccccCch---hhHHH----HHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            789999999999742   11111    3445555678899999999999999999998876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01890 LepA LepA subfamily

Probab=97.78  E-value=0.00012  Score=73.46  Aligned_cols=105  Identities=14%  Similarity=0.037  Sum_probs=70.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|...+..+...  .+..    .-++|+|+|.+++.+. .+++.|....    .                    
T Consensus        69 ~~l~Dt~G~~~~~~~~~~--~~~~----ad~~i~v~D~~~~~~~-~~~~~~~~~~----~--------------------  117 (179)
T cd01890          69 LNLIDTPGHVDFSYEVSR--SLAA----CEGALLLVDATQGVEA-QTLANFYLAL----E--------------------  117 (179)
T ss_pred             EEEEECCCChhhHHHHHH--HHHh----cCeEEEEEECCCCccH-hhHHHHHHHH----H--------------------
Confidence            489999998665554443  2221    2278999999998765 5555553210    0                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc---eeEec
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHS  549 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs---L~ftS  549 (890)
                                                      .++|+|||+||+|+...-..+       .+..++..+|..   .|.+|
T Consensus       118 --------------------------------~~~~iiiv~NK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~S  158 (179)
T cd01890         118 --------------------------------NNLEIIPVINKIDLPSADPER-------VKQQIEDVLGLDPSEAILVS  158 (179)
T ss_pred             --------------------------------cCCCEEEEEECCCCCcCCHHH-------HHHHHHHHhCCCcccEEEee
Confidence                                            147899999999986321111       122344455653   89999


Q ss_pred             cCChhhHHHHHHHHhhhh
Q psy11649        550 SLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~  567 (890)
                      ++.+.|++.|+++|...+
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         159 AKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccCCCCHHHHHHHHHhhC
Confidence            999999999999998654

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.75  E-value=0.00016  Score=81.69  Aligned_cols=87  Identities=15%  Similarity=0.136  Sum_probs=63.8

Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .+.|.+++|++++...++ ..+..|+..+.                                ..++|++||+||+|+..+
T Consensus       119 ANvD~vlIV~s~~p~~s~-~~Ldr~L~~a~--------------------------------~~~i~~VIVlNK~DL~~~  165 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSL-NIIDRYLVACE--------------------------------TLGIEPLIVLNKIDLLDD  165 (347)
T ss_pred             EEccEEEEEEeCCCCCCH-HHHHHHHHHHH--------------------------------hcCCCEEEEEECccCCCc
Confidence            468999999999877777 77888875332                                136899999999999631


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                         +.+..... ........|..++++||+++.|+++|++.|..
T Consensus       166 ---~~~~~~~~-~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        166 ---EGRAFVNE-QLDIYRNIGYRVLMVSSHTGEGLEELEAALTG  205 (347)
T ss_pred             ---HHHHHHHH-HHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhh
Confidence               12222222 22334567889999999999999999988865

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.75  E-value=0.00026  Score=77.89  Aligned_cols=140  Identities=12%  Similarity=0.075  Sum_probs=74.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCC------------CCCCccceeEEEEEE-eccccceEEEEEEcCCCcc------
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDT------------PKPTLALEYIYARKS-GKTVMKDICHLWELGSGTS------   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~------------~kptigvdY~f~~~~-g~~~~k~~l~IwDlpG~~~------   95 (890)
                      .++|+|+|.+|+|||||+|.|++....            ...++.+..  .+.. ........+.|+||||.-.      
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~   81 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEE--RTVELEENGVKLNLTIIDTPGFGDNIDNSD   81 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEE--EEEEEEETCEEEEEEEEEEC-CSSSSTHCH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceee--EEEEeccCCcceEEEEEeCCCccccccchh
Confidence            689999999999999999999984210            112222221  1111 1222233899999999321      


Q ss_pred             ------------hhhHHhhh----h--ccccccccCcEEEEEEeCCCc--CchHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649         96 ------------RLEVASLF----S--SFSLTAQSGFTLVLMLDLSRL--NSLWTEAETFLAKFRAIFESNESVREKRGS  155 (890)
Q Consensus        96 ------------~~~Li~~~----r--~~~~~~~~ad~IIIV~DlSnp--~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~  155 (890)
                                  |...+..-    |  ...-+   .+++++.++.+..  ..+  .+    +.+++...           
T Consensus        82 ~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~R---VH~cLYfI~pt~~~L~~~--Di----~~mk~Ls~-----------  141 (281)
T PF00735_consen   82 CWEPIVDYIESQFDSYLEEESKINRPRIEDTR---VHACLYFIPPTGHGLKPL--DI----EFMKRLSK-----------  141 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSS-TTS-------EEEEEEEE-TTSSSS-HH--HH----HHHHHHTT-----------
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccCcCCCC---cceEEEEEcCCCccchHH--HH----HHHHHhcc-----------
Confidence                        11111110    1  11123   6899999987652  222  22    22222111           


Q ss_pred             cccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649        156 FEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS  218 (890)
Q Consensus       156 l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS  218 (890)
                                         .+++|-|..|+|.+.   +++.....+.++.-...+++.++...
T Consensus       142 -------------------~vNvIPvIaKaD~lt---~~el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  142 -------------------RVNVIPVIAKADTLT---PEELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             -------------------TSEEEEEESTGGGS----HHHHHHHHHHHHHHHHHTT--S----
T ss_pred             -------------------cccEEeEEecccccC---HHHHHHHHHHHHHHHHHcCceeeccc
Confidence                               378899999999863   45666666777777778888766533

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00024  Score=80.91  Aligned_cols=149  Identities=9%  Similarity=0.025  Sum_probs=96.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-hhHHhhhhccccccc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQ  111 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~  111 (890)
                      |...|.=--|||||+..+++..     +.-+-+++.|..|......   +..+.+.|.||.+++ ..++...       .
T Consensus         3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~---d~~~~fIDvpgh~~~i~~miag~-------~   72 (447)
T COG3276           3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE---DGVMGFIDVPGHPDFISNLLAGL-------G   72 (447)
T ss_pred             EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC---CCceEEeeCCCcHHHHHHHHhhh-------c
Confidence            5677888889999999999853     2334555555444333321   126899999999776 4444443       1


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE-EEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL-ILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi-IVVgNK~Dl~~d  190 (890)
                      +.|.+++|+|.++--.- ...        +++.-                         ...++++- ++|.||+|..++
T Consensus        73 ~~d~alLvV~~deGl~~-qtg--------EhL~i-------------------------Ldllgi~~giivltk~D~~d~  118 (447)
T COG3276          73 GIDYALLVVAADEGLMA-QTG--------EHLLI-------------------------LDLLGIKNGIIVLTKADRVDE  118 (447)
T ss_pred             CCceEEEEEeCccCcch-hhH--------HHHHH-------------------------HHhcCCCceEEEEeccccccH
Confidence            47899999998652221 111        11111                         22345665 999999999631


Q ss_pred             CCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          .  .+.+..+++-...   .++++.+|+++|.||++|+++|..++
T Consensus       119 ----~--r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~  161 (447)
T COG3276         119 ----A--RIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL  161 (447)
T ss_pred             ----H--HHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence                1  2223333333332   46789999999999999999999987

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=0.00033  Score=78.78  Aligned_cols=87  Identities=13%  Similarity=0.122  Sum_probs=53.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---CCC-----CCCccceeEEEEEE---e--cc-ccce---EEEEEEcCCCcc--
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTP-----KPTLALEYIYARKS---G--KT-VMKD---ICHLWELGSGTS--   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~-----kptigvdY~f~~~~---g--~~-~~k~---~l~IwDlpG~~~--   95 (890)
                      .+++-|||-||||||||+|.+|...   .||     .|.+|+-|.-.-+-   +  .. ..+.   .+++.|++|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            3689999999999999999999842   233     44444433211000   1  11 1111   789999998643  


Q ss_pred             --hhhHHhhhhccccccccCcEEEEEEeCCC
Q psy11649         96 --RLEVASLFSSFSLTAQSGFTLVLMLDLSR  124 (890)
Q Consensus        96 --~~~Li~~~r~~~~~~~~ad~IIIV~DlSn  124 (890)
                        .+.|-..| -.+++  .+|+++-|+|.+.
T Consensus        82 s~GeGLGNkF-L~~IR--evdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKF-LDNIR--EVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHH-HHhhh--hcCeEEEEEEecC
Confidence              24444444 01122  4999999999884

>PRK12289 GTPase RsgA; Reviewed

Probab=97.74  E-value=0.00013  Score=82.58  Aligned_cols=83  Identities=17%  Similarity=0.053  Sum_probs=59.0

Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|.+++|+|++++..-...+.+|+..+.                                ..++|++||+||+|+..  
T Consensus        89 NvD~vLlV~d~~~p~~~~~~LdR~L~~a~--------------------------------~~~ip~ILVlNK~DLv~--  134 (352)
T PRK12289         89 NADQILLVFALAEPPLDPWQLSRFLVKAE--------------------------------STGLEIVLCLNKADLVS--  134 (352)
T ss_pred             cCCEEEEEEECCCCCCCHHHHHHHHHHHH--------------------------------HCCCCEEEEEEchhcCC--
Confidence            69999999999987632135667765331                                12689999999999962  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                         ..+ .. ........+|..++++||+++.|+++|++.|.
T Consensus       135 ---~~~-~~-~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~  171 (352)
T PRK12289        135 ---PTE-QQ-QWQDRLQQWGYQPLFISVETGIGLEALLEQLR  171 (352)
T ss_pred             ---hHH-HH-HHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhc
Confidence               111 11 22223346788999999999999999977764

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=97.74  E-value=0.00022  Score=66.83  Aligned_cols=111  Identities=18%  Similarity=0.224  Sum_probs=74.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+++|..........  .+.    ..-++++|+|++.|... +.+..|.......                     
T Consensus        46 ~~~l~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~---------------------   97 (157)
T cd00882          46 KLQIWDTAGQERFRSLRRL--YYR----GADGIILVYDVTDRESF-ENVKEWLLLILIN---------------------   97 (157)
T ss_pred             EEEEEecCChHHHHhHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHh---------------------
Confidence            3579999997554443222  111    12378999999999887 6666664110000                     


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                    ....++|++||+||+|.....+.+...    ..+.++...+..++.+|++
T Consensus        98 ------------------------------~~~~~~~~ivv~nk~D~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~  143 (157)
T cd00882          98 ------------------------------KEGENIPIILVGNKIDLPEERVVSEEE----LAEQLAKELGVPYFETSAK  143 (157)
T ss_pred             ------------------------------hccCCCcEEEEEeccccccccchHHHH----HHHHHHhhcCCcEEEEecC
Confidence                                          011258999999999998543332222    4556667788999999999


Q ss_pred             ChhhHHHHHHHHh
Q psy11649        552 DPGLVKRTRDILN  564 (890)
Q Consensus       552 ~~~n~~~l~kyi~  564 (890)
                      .+.+++.+..+|.
T Consensus       144 ~~~~i~~~~~~l~  156 (157)
T cd00882         144 TGENVEELFEELA  156 (157)
T ss_pred             CCCChHHHHHHHh
Confidence            9999999998875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01859 MJ1464 MJ1464

Probab=97.73  E-value=0.00012  Score=72.48  Aligned_cols=55  Identities=18%  Similarity=0.207  Sum_probs=41.2

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.|+++|+||+|+..     ... . .....+....+.+++++||+++.|+++|++.|...+
T Consensus        41 ~~p~iiv~NK~Dl~~-----~~~-~-~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~   95 (156)
T cd01859          41 GKKLLIVLNKADLVP-----KEV-L-EKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELA   95 (156)
T ss_pred             CCcEEEEEEhHHhCC-----HHH-H-HHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHH
Confidence            589999999999852     111 1 112234445677899999999999999999998876

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=97.71  E-value=0.00015  Score=74.42  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHH-----HHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-----HVNGA---SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-----~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.|+++|+||+|+...   +.   ....+..++     ...+.   .++++||+++.|++++++.|...+
T Consensus        61 ~~~~ilV~NK~Dl~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          61 NNPVILVGNKIDLLPK---DK---NLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcEEEEEEchhcCCC---CC---CHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            5799999999998631   11   111122222     23333   589999999999999999998875

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0093|consensus

Probab=97.69  E-value=5.8e-05  Score=74.15  Aligned_cols=112  Identities=18%  Similarity=0.251  Sum_probs=84.5

Q ss_pred             eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +.||+-.|+..++.       ++..-. +.+.+|+|.|.++-.++ +++|.|.-++...  .                  
T Consensus        72 lQiwDTagqEryrt-------iTTayyRgamgfiLmyDitNeeSf-~svqdw~tqIkty--s------------------  123 (193)
T KOG0093|consen   72 LQIWDTAGQERYRT-------ITTAYYRGAMGFILMYDITNEESF-NSVQDWITQIKTY--S------------------  123 (193)
T ss_pred             EEEEecccchhhhH-------HHHHHhhccceEEEEEecCCHHHH-HHHHHHHHHheee--e------------------
Confidence            37999999955443       333333 46789999999999998 9999999876542  0                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                             |                         ..+|||+||||||+-.+     +-.-..--|.|+.+.|--.|=||+|
T Consensus       124 -------w-------------------------~naqvilvgnKCDmd~e-----Rvis~e~g~~l~~~LGfefFEtSaK  166 (193)
T KOG0093|consen  124 -------W-------------------------DNAQVILVGNKCDMDSE-----RVISHERGRQLADQLGFEFFETSAK  166 (193)
T ss_pred             -------c-------------------------cCceEEEEecccCCccc-----eeeeHHHHHHHHHHhChHHhhhccc
Confidence                   1                         13789999999998532     1111234678888999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      ++.|+.-++.-++-.+..
T Consensus       167 ~NinVk~~Fe~lv~~Ic~  184 (193)
T KOG0093|consen  167 ENINVKQVFERLVDIICD  184 (193)
T ss_pred             ccccHHHHHHHHHHHHHH
Confidence            999999999888877764

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=97.69  E-value=0.00013  Score=72.53  Aligned_cols=108  Identities=14%  Similarity=0.148  Sum_probs=66.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+...  .+.    ..-++|+|+|.+.+.++ +.+.+|+..+-   ..    .              
T Consensus        46 ~~l~D~~G~~~~~~~~~~--~~~----~ad~~i~v~D~~~~~s~-~~~~~~~~~~~---~~----~--------------   97 (159)
T cd04150          46 FTVWDVGGQDKIRPLWRH--YFQ----NTQGLIFVVDSNDRERI-GEAREELQRML---NE----D--------------   97 (159)
T ss_pred             EEEEECCCCHhHHHHHHH--Hhc----CCCEEEEEEeCCCHHHH-HHHHHHHHHHH---hc----H--------------
Confidence            599999998655544333  112    12378999999998876 55555443221   10    0              


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH----HcCCceeEe
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH----VNGASLLFH  548 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl----~yGAsL~ft  548 (890)
                              .                      .-.+|++|||||+|+....+.++   +   ..++++    ..++..+-+
T Consensus        98 --------~----------------------~~~~piilv~NK~Dl~~~~~~~~---i---~~~~~~~~~~~~~~~~~~~  141 (159)
T cd04150          98 --------E----------------------LRDAVLLVFANKQDLPNAMSAAE---V---TDKLGLHSLRNRNWYIQAT  141 (159)
T ss_pred             --------H----------------------hcCCCEEEEEECCCCCCCCCHHH---H---HHHhCccccCCCCEEEEEe
Confidence                    0                      00368999999999965433222   1   112221    123334458


Q ss_pred             ccCChhhHHHHHHHHh
Q psy11649        549 SSLDPGLVKRTRDILN  564 (890)
Q Consensus       549 S~K~~~n~~~l~kyi~  564 (890)
                      |+|.+.|++.+++.|.
T Consensus       142 Sak~g~gv~~~~~~l~  157 (159)
T cd04150         142 CATSGDGLYEGLDWLS  157 (159)
T ss_pred             eCCCCCCHHHHHHHHh
Confidence            9999999999988774

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.66  E-value=0.0002  Score=78.81  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=39.7

Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +..+-++|.||+|+....    ........+.+...+ ++.++.+||++++|++++.++|...
T Consensus       229 f~~ADIVVLNKiDLl~~~----~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        229 FAAASLMLLNKVDLLPYL----NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hhcCcEEEEEhHHcCccc----HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            356789999999996311    111222233333322 6889999999999999999998764

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.64  E-value=0.00077  Score=80.72  Aligned_cols=123  Identities=10%  Similarity=-0.024  Sum_probs=69.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-C---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-------hhHHhh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-D---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-------LEVASL  102 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-------~~Li~~  102 (890)
                      ...+|+|+|.+||||||++|.|++.. .   ...+.++ ...  ...+.. .+..+.|+||||....       ..+...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~--ei~~~i-dG~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQ--EIEGLV-QGVKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEE--EEEEEE-CCceEEEEECCCCCccccchHHHHHHHHH
Confidence            45789999999999999999999953 1   2222222 110  111111 2347999999997542       111111


Q ss_pred             hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                      .. ..+...++|+||+|..++......+ -..+++.+.+.+..-                           .---+|||.
T Consensus       193 Ik-~~Lsk~gpDVVLlV~RLd~~~~D~e-D~~aLr~Iq~lFG~~---------------------------Iwk~tIVVF  243 (763)
T TIGR00993       193 VK-KFIKKNPPDIVLYVDRLDMQTRDSN-DLPLLRTITDVLGPS---------------------------IWFNAIVTL  243 (763)
T ss_pred             HH-HHHhcCCCCEEEEEEeCCCccccHH-HHHHHHHHHHHhCHH---------------------------hHcCEEEEE
Confidence            10 0011124889999998875433212 124455454443320                           112489999


Q ss_pred             ecccCCC
Q psy11649        183 GKYDLFE  189 (890)
Q Consensus       183 NK~Dl~~  189 (890)
                      |..|...
T Consensus       244 ThgD~lp  250 (763)
T TIGR00993       244 THAASAP  250 (763)
T ss_pred             eCCccCC
Confidence            9999863

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=97.64  E-value=0.00025  Score=72.49  Aligned_cols=115  Identities=13%  Similarity=0.146  Sum_probs=68.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+++|+..+..+...  -+..    .-.+|+|+|.|.+.++ +.++.|+..   ....                  
T Consensus        62 ~~~i~D~~Gq~~~~~~~~~--~~~~----a~~iI~V~D~s~~~s~-~~~~~~l~~---~l~~------------------  113 (181)
T PLN00223         62 SFTVWDVGGQDKIRPLWRH--YFQN----TQGLIFVVDSNDRDRV-VEARDELHR---MLNE------------------  113 (181)
T ss_pred             EEEEEECCCCHHHHHHHHH--Hhcc----CCEEEEEEeCCcHHHH-HHHHHHHHH---HhcC------------------
Confidence            4699999999766665443  1221    2378999999998776 333333322   1110                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~  550 (890)
                              ...                      -.+|++|||+|.|+....+.++   +...+.--++.-.. .++-||+
T Consensus       114 --------~~~----------------------~~~piilv~NK~Dl~~~~~~~~---~~~~l~l~~~~~~~~~~~~~Sa  160 (181)
T PLN00223        114 --------DEL----------------------RDAVLLVFANKQDLPNAMNAAE---ITDKLGLHSLRQRHWYIQSTCA  160 (181)
T ss_pred             --------Hhh----------------------CCCCEEEEEECCCCCCCCCHHH---HHHHhCccccCCCceEEEeccC
Confidence                    000                      1379999999999976554222   11111100000000 2334899


Q ss_pred             CChhhHHHHHHHHhhhh
Q psy11649        551 LDPGLVKRTRDILNHYA  567 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~  567 (890)
                      +.+.+++.++++|.+.+
T Consensus       161 ~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        161 TSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999999998764

>cd01898 Obg Obg subfamily

Probab=97.64  E-value=0.00024  Score=70.31  Aligned_cols=114  Identities=14%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             eeEEEEeCCCcccc----ccccccccccccccc-ceEEEEEEeCCCc-hhHHHHHHHHHHHHHHHHHhhhhHHhhccccc
Q psy11649        392 ICHLWELGSGTSRL----EVASLFSSFSLTAQS-GFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFE  465 (890)
Q Consensus       392 i~~vW~L~G~~~~~----~Ll~~~~al~~~~~~-~~~viivlDlS~P-w~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~  465 (890)
                      -+.+|+..|.....    ++...+  +  ..+. .-++++|+|.+.+ ..+ +++..|.+.++++...            
T Consensus        49 ~~~l~DtpG~~~~~~~~~~~~~~~--~--~~~~~~d~vi~v~D~~~~~~~~-~~~~~~~~~l~~~~~~------------  111 (170)
T cd01898          49 SFVVADIPGLIEGASEGKGLGHRF--L--RHIERTRLLLHVIDLSGDDDPV-EDYKTIRNELELYNPE------------  111 (170)
T ss_pred             eEEEEecCcccCcccccCCchHHH--H--HHHHhCCEEEEEEecCCCCCHH-HHHHHHHHHHHHhCcc------------
Confidence            46899999953211    111110  0  1111 2289999999999 454 8888888877663210            


Q ss_pred             ccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH-cCCc
Q psy11649        466 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-NGAS  544 (890)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~-yGAs  544 (890)
                                                            ..++|++||+||+|+...-+  ....++..    +.. .+..
T Consensus       112 --------------------------------------~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~----~~~~~~~~  147 (170)
T cd01898         112 --------------------------------------LLEKPRIVVLNKIDLLDEEE--LFELLKEL----LKELWGKP  147 (170)
T ss_pred             --------------------------------------ccccccEEEEEchhcCCchh--hHHHHHHH----HhhCCCCC
Confidence                                                  01478899999999864322  12223332    233 4678


Q ss_pred             eeEeccCChhhHHHHHHHHhhh
Q psy11649        545 LLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       545 L~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      .+.+|+|.+.+++.+++.|...
T Consensus       148 ~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         148 VFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            8999999999999999998754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=97.63  E-value=0.00026  Score=71.18  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|++.|...+..+...  .+.    ....+++++|.+...++ +.+..|+..+-+...                    
T Consensus        51 ~~l~D~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~--------------------  103 (180)
T cd04137          51 LEIVDTAGQDEYSILPQK--YSI----GIHGYILVYSVTSRKSF-EVVKVIYDKILDMLG--------------------  103 (180)
T ss_pred             EEEEECCChHhhHHHHHH--HHh----hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            479999998554433332  111    22368999999998877 777777554322110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     ..++|+|||+||+|+...   +  ..-...++.++..++...+.+|++.
T Consensus       104 -------------------------------~~~~p~ilv~NK~Dl~~~---~--~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (180)
T cd04137         104 -------------------------------KESVPIVLVGNKSDLHTQ---R--QVSTEEGKELAESWGAAFLESSARE  147 (180)
T ss_pred             -------------------------------CCCCCEEEEEEchhhhhc---C--ccCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                           124789999999998631   1  1112235666778889999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~  571 (890)
                      +.+++.++..|.-.+...+
T Consensus       148 ~~gv~~l~~~l~~~~~~~~  166 (180)
T cd04137         148 NENVEEAFELLIEEIEKVE  166 (180)
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999987766543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01858 NGP_1 NGP-1

Probab=97.62  E-value=0.00027  Score=70.36  Aligned_cols=86  Identities=16%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             cCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      ++|++++|+|+++|..- ...+..++.   .                              ...+.|+++|.||+|+.. 
T Consensus         8 ~aD~il~VvD~~~p~~~~~~~i~~~l~---~------------------------------~~~~~p~ilVlNKiDl~~-   53 (157)
T cd01858           8 SSDVVIQVLDARDPMGTRCKHVEEYLK---K------------------------------EKPHKHLIFVLNKCDLVP-   53 (157)
T ss_pred             hCCEEEEEEECCCCccccCHHHHHHHH---h------------------------------ccCCCCEEEEEEchhcCC-
Confidence            59999999999997431 122333222   1                              012489999999999962 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           +......+..+...+....+.+||+.+.|++.+.+.|...+
T Consensus        54 -----~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          54 -----TWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             -----HHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHH
Confidence                 11233445555544444468899999999999999997764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.61  E-value=0.00025  Score=70.56  Aligned_cols=56  Identities=21%  Similarity=0.219  Sum_probs=41.0

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+++|.||+|+..     . ....+.+..+....+..++.+||+++.|++++++.|....
T Consensus        29 ~~p~IiVlNK~Dl~~-----~-~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          29 GKKLILVLNKADLVP-----K-EVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             CCCEEEEEechhcCC-----H-HHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence            689999999999952     1 1122233344444567789999999999999999887653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.61  E-value=0.00018  Score=77.54  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccccc
Q psy11649        423 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLI  502 (890)
Q Consensus       423 ~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~  502 (890)
                      .+++|+|++.|..-++.+++|+..++.                                                     
T Consensus        39 ~viiV~d~~~p~~s~~~l~r~l~~~~~-----------------------------------------------------   65 (245)
T TIGR00157        39 QIVIVSSAVLPELSLNQLDRFLVVAEA-----------------------------------------------------   65 (245)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHH-----------------------------------------------------
Confidence            789999999998444889999854431                                                     


Q ss_pred             ccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649        503 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       503 ~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                        .++|+|||+||+|+..+   +  ....+.++.|+ ++|...|++|+|.+.|++.|++++..+
T Consensus        66 --~~i~~vIV~NK~DL~~~---~--~~~~~~~~~~~-~~g~~v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157        66 --QNIEPIIVLNKIDLLDD---E--DMEKEQLDIYR-NIGYQVLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             --CCCCEEEEEECcccCCC---H--HHHHHHHHHHH-HCCCeEEEEecCCchhHHHHHhhhcCC
Confidence              14788999999999631   1  12224555665 589999999999999999999988653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG2486|consensus

Probab=97.61  E-value=0.00015  Score=78.17  Aligned_cols=157  Identities=15%  Similarity=0.094  Sum_probs=89.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCC----c------ch
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG----T------SR   96 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~----~------~~   96 (890)
                      +.+...++++|.+|||||||+|-++...     +..+++-+      +............+.|+||.    +      .+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T------q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~  206 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT------QAINHFHVGKSWYEVDLPGYGRAGYGFELPADW  206 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc------eeeeeeeccceEEEEecCCcccccCCccCcchH
Confidence            4556789999999999999999998732     22222222      11111112236899999992    1      22


Q ss_pred             hhHHhhh--hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         97 LEVASLF--SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        97 ~~Li~~~--r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      ..+...|  ..+++     -.+.+.+|.+.+-.--+ ..-.|+.                                   .
T Consensus       207 ~~~t~~Y~leR~nL-----v~~FLLvd~sv~i~~~D~~~i~~~g-----------------------------------e  246 (320)
T KOG2486|consen  207 DKFTKSYLLERENL-----VRVFLLVDASVPIQPTDNPEIAWLG-----------------------------------E  246 (320)
T ss_pred             hHhHHHHHHhhhhh-----heeeeeeeccCCCCCCChHHHHHHh-----------------------------------h
Confidence            3444555  12222     25666777766322101 1122332                                   2


Q ss_pred             CCCcEEEEeecccCCCCCC-----c-chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        174 FPVPLILIGGKYDLFENLE-----P-NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d-----~-e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      .++|+.+|.||||...+..     + ...+.-.+.+-+.+.....+.+++|+.++.|+++|+=.|.+
T Consensus       247 ~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  247 NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence            3799999999999864321     0 01111122233333333456788999999999998555444

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.60  E-value=0.00016  Score=69.69  Aligned_cols=111  Identities=17%  Similarity=0.128  Sum_probs=69.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|++.|...+..+...  .+..  .  -.+++|+|++.+.++ .....|+..+....                     
T Consensus        46 ~~~~D~~g~~~~~~~~~~--~~~~--~--d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~---------------------   97 (159)
T cd04159          46 LKVWDLGGQPRFRSMWER--YCRG--V--NAIVYVVDAADRTAL-EAAKNELHDLLEKP---------------------   97 (159)
T ss_pred             EEEEECCCCHhHHHHHHH--HHhc--C--CEEEEEEECCCHHHH-HHHHHHHHHHHcCh---------------------
Confidence            589999999777665544  2221  1  268899999998876 44444433322100                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~K  551 (890)
                                                    ...++|++||+||+|+......   +.+...+. ......+...+.+|++
T Consensus        98 ------------------------------~~~~~p~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~  144 (159)
T cd04159          98 ------------------------------SLEGIPLLVLGNKNDLPGALSV---DELIEQMNLKSITDREVSCYSISCK  144 (159)
T ss_pred             ------------------------------hhcCCCEEEEEeCccccCCcCH---HHHHHHhCcccccCCceEEEEEEec
Confidence                                          0124799999999998743221   11111111 1112344678999999


Q ss_pred             ChhhHHHHHHHHh
Q psy11649        552 DPGLVKRTRDILN  564 (890)
Q Consensus       552 ~~~n~~~l~kyi~  564 (890)
                      .+.+++.++.+|.
T Consensus       145 ~~~gi~~l~~~l~  157 (159)
T cd04159         145 EKTNIDIVLDWLI  157 (159)
T ss_pred             cCCChHHHHHHHh
Confidence            9999999998875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.60  E-value=0.00025  Score=70.65  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~   58 (890)
                      |+|+|..++|||||+|.|+|.
T Consensus         1 V~v~G~~ssGKSTliNaLlG~   21 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGR   21 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTS
T ss_pred             CEEEcCCCCCHHHHHHHHHhc
Confidence            789999999999999999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>smart00053 DYNc Dynamin, GTPase

Probab=97.60  E-value=0.00076  Score=72.56  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -.+++|+|+.|+||||+++.+++.
T Consensus        26 ~p~i~vvG~~~~GKSt~l~~i~g~   49 (240)
T smart00053       26 LPQIAVVGGQSAGKSSVLENFVGR   49 (240)
T ss_pred             CCeEEEEcCCCccHHHHHHHHhCC
Confidence            347999999999999999999984

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.59  E-value=0.00027  Score=80.30  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=67.6

Q ss_pred             CcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649         93 GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR  172 (890)
Q Consensus        93 ~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~  172 (890)
                      .+.|..++..+    ++  +++++++|+|+++...-      |...+.+...                            
T Consensus        50 ~e~f~~~l~~~----~~--~~~~Il~VvD~~d~~~s------~~~~l~~~~~----------------------------   89 (360)
T TIGR03597        50 DDDFLNLLNSL----GD--SNALIVYVVDIFDFEGS------LIPELKRFVG----------------------------   89 (360)
T ss_pred             HHHHHHHHhhc----cc--CCcEEEEEEECcCCCCC------ccHHHHHHhC----------------------------
Confidence            34666666666    22  48899999999886542      3333333221                            


Q ss_pred             CCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHH
Q psy11649        173 TFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       173 ~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        +.|+++|+||+|+...  ..........++++++.+|+   .++++||+++.|++++++.|...
T Consensus        90 --~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597        90 --GNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             --CCCEEEEEEchhhCCC--CCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence              4699999999999631  11122334455566777886   48999999999999999988665

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1144|consensus

Probab=97.58  E-value=0.00035  Score=83.11  Aligned_cols=162  Identities=15%  Similarity=0.118  Sum_probs=100.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC---CC---CCCCCccceeEEEEEE----------eccccce-EEEEEEcCCCcc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK---ND---TPKPTLALEYIYARKS----------GKTVMKD-ICHLWELGSGTS   95 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~---~~---~~kptigvdY~f~~~~----------g~~~~k~-~l~IwDlpG~~~   95 (890)
                      .+..=|+|+|---+|||-|+..+.+.   .+   .....+|..|.-....          +....+. -+.++||||+++
T Consensus       473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            34455899999999999999999772   12   2223344443221100          1111122 689999999999


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR  172 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~  172 (890)
                      |..+.....      .-||.+|+|+|+-.   |.++ +++..+                                    +
T Consensus       553 FtnlRsrgs------slC~~aIlvvdImhGlepqti-ESi~lL------------------------------------R  589 (1064)
T KOG1144|consen  553 FTNLRSRGS------SLCDLAILVVDIMHGLEPQTI-ESINLL------------------------------------R  589 (1064)
T ss_pred             hhhhhhccc------cccceEEEEeehhccCCcchh-HHHHHH------------------------------------H
Confidence            988887661      13999999999987   4443 222221                                    1


Q ss_pred             CCCCcEEEEeecccCCCCCCcc------------hhhh-------hHHHHHHHHHH-------c-----C--CeEEEEec
Q psy11649        173 TFPVPLILIGGKYDLFENLEPN------------KKRI-------AVQCLRYLAHV-------N-----G--ASLLFHSS  219 (890)
Q Consensus       173 ~l~IPiIVVgNK~Dl~~d~d~e------------~r~~-------i~~~lr~la~~-------~-----G--a~l~etSA  219 (890)
                      .-..|+||+.||+|.+-+....            .+.+       ....+.+|+.+       |     |  +++++|||
T Consensus       590 ~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA  669 (1064)
T KOG1144|consen  590 MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSA  669 (1064)
T ss_pred             hcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccc
Confidence            2257999999999986331110            1111       11122233332       1     1  46899999


Q ss_pred             cCCCCHHHHHHHHHHHHh
Q psy11649        220 LDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       220 K~~~nId~Lk~~I~~~lf  237 (890)
                      .+|.||-.|.-+|.++..
T Consensus       670 ~sGeGipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  670 ISGEGIPDLLLLLVQLTQ  687 (1064)
T ss_pred             ccCCCcHHHHHHHHHHHH
Confidence            999999999888877653

>cd04171 SelB SelB subfamily

Probab=97.58  E-value=0.00061  Score=66.70  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=40.7

Q ss_pred             cEEEEEeccccccCCChhHHHHHHHHHHHHHHH---cCCceeEeccCChhhHHHHHHHHhh
Q psy11649        508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~---yGAsL~ftS~K~~~n~~~l~kyi~h  565 (890)
                      |+|+|+||+|+..   .+....+.+.+..++..   .+..++.+|++++.|++.++.+|.+
T Consensus       106 ~~ilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         106 RGLVVLTKADLVD---EDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             cEEEEEECccccC---HHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            8899999999973   22223333344444444   5789999999999999999999865

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01859 MJ1464 MJ1464

Probab=97.57  E-value=0.00027  Score=70.03  Aligned_cols=55  Identities=16%  Similarity=0.175  Sum_probs=37.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ..+++++|.+|+|||||+|+|.++. ..+.++.|..+.  ......  ...+.+|||||.
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~--~~~~~~--~~~~~~~DtpGi  156 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKG--EQLVKI--TSKIYLLDTPGV  156 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeee--eEEEEc--CCCEEEEECcCC
Confidence            5689999999999999999999753 233445553221  111111  125899999993

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PLN00023 GTP-binding protein; Provisional

Probab=97.57  E-value=0.00019  Score=80.07  Aligned_cols=102  Identities=21%  Similarity=0.232  Sum_probs=68.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+.+|+..+..+...  -+..    ...+|+|+|+|.+.++ +.|++|++.++.+...              ..+..
T Consensus        85 LqIWDTAGqErfrsL~~~--yyr~----AdgiILVyDITdr~SF-enL~kWl~eI~~~~~~--------------s~p~~  143 (334)
T PLN00023         85 VELWDVSGHERYKDCRSL--FYSQ----INGVIFVHDLSQRRTK-TSLQKWASEVAATGTF--------------SAPLG  143 (334)
T ss_pred             EEEEECCCChhhhhhhHH--hccC----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhccc--------------ccccc
Confidence            599999999877776665  2232    3379999999999988 9999999988765321              00000


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHH----HHHHHHHHHHHHHcCCc
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKK----RIAVQCLRYLAHVNGAS  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~----d~Iq~~lR~fcl~yGAs  544 (890)
                             ...        +           ....+|+||||+|+|+..   ++..    .......+.||.++|..
T Consensus       144 -------s~~--------~-----------~~~~ipIILVGNK~DL~~---~~~~r~~s~~~~e~a~~~A~~~g~l  190 (334)
T PLN00023        144 -------SGG--------P-----------GGLPVPYIVIGNKADIAP---KEGTRGSSGNLVDAARQWVEKQGLL  190 (334)
T ss_pred             -------ccc--------c-----------cCCCCcEEEEEECccccc---cccccccccccHHHHHHHHHHcCCC
Confidence                   000        0           001489999999999953   1111    12467889999998844

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=97.55  E-value=0.00035  Score=73.01  Aligned_cols=110  Identities=12%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  -..    ....+|+|+|++++.++ ..+..|+..+++..+                    
T Consensus        60 i~~~Dt~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  112 (215)
T PTZ00132         60 FNVWDTAGQEKFGGLRDG--YYI----KGQCAIIMFDVTSRITY-KNVPNWHRDIVRVCE--------------------  112 (215)
T ss_pred             EEEEECCCchhhhhhhHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            489999998655444322  011    23478999999999998 888888877664211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       .+|+++|++|+|+-..-..  .+.     -.++...|...+.+|+++
T Consensus       113 ---------------------------------~~~i~lv~nK~Dl~~~~~~--~~~-----~~~~~~~~~~~~e~Sa~~  152 (215)
T PTZ00132        113 ---------------------------------NIPIVLVGNKVDVKDRQVK--ARQ-----ITFHRKKNLQYYDISAKS  152 (215)
T ss_pred             ---------------------------------CCCEEEEEECccCccccCC--HHH-----HHHHHHcCCEEEEEeCCC
Confidence                                             2688999999998532111  111     136677888899999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++..+..|.-.+..
T Consensus       153 ~~~v~~~f~~ia~~l~~  169 (215)
T PTZ00132        153 NYNFEKPFLWLARRLTN  169 (215)
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999988888766654

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.55  E-value=0.00022  Score=72.92  Aligned_cols=54  Identities=17%  Similarity=0.169  Sum_probs=37.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ..++|+|+|.||||||||+|+|++...   ...|+++......    ..  ...+.++||||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~----~~--~~~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV----HL--DKKVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE----Ee--CCCEEEEECcCC
Confidence            357999999999999999999998532   3335555432211    11  125899999993

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0091|consensus

Probab=97.54  E-value=0.00028  Score=70.53  Aligned_cols=135  Identities=18%  Similarity=0.222  Sum_probs=101.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccce-EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGF-TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~-~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +.+|+-.|+..++.       ++..-.+++ -+++|.|.|+--++ +.++.|+..+.-++..                  
T Consensus        60 lqlwdtagqerfrs-------itksyyrnsvgvllvyditnr~sf-ehv~~w~~ea~m~~q~------------------  113 (213)
T KOG0091|consen   60 LQLWDTAGQERFRS-------ITKSYYRNSVGVLLVYDITNRESF-EHVENWVKEAAMATQG------------------  113 (213)
T ss_pred             EEEeeccchHHHHH-------HHHHHhhcccceEEEEeccchhhH-HHHHHHHHHHHHhcCC------------------
Confidence            47899999965553       343334433 48999999999998 9999998877765552                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      |.-+=+.+||+|+|+.+     |+..-.+-.-+||.++|-..+=||+|
T Consensus       114 --------------------------------P~k~VFlLVGhKsDL~S-----qRqVt~EEaEklAa~hgM~FVETSak  156 (213)
T KOG0091|consen  114 --------------------------------PDKVVFLLVGHKSDLQS-----QRQVTAEEAEKLAASHGMAFVETSAK  156 (213)
T ss_pred             --------------------------------CCeeEEEEeccccchhh-----hccccHHHHHHHHHhcCceEEEeccc
Confidence                                            01133579999999983     34444556778999999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCCCCcceecccCCceEecCcCCccccccC
Q psy11649        552 DPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEG  598 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~~~~~~~~v~~~d~ifIPaGwDs~~kI~~  598 (890)
                      .+.|++..+.+|..-+|..=+        ..-+-+--||+..+.+-+
T Consensus       157 ~g~NVeEAF~mlaqeIf~~i~--------qGeik~edgw~gvKSsrp  195 (213)
T KOG0091|consen  157 NGCNVEEAFDMLAQEIFQAIQ--------QGEIKLEDGWGGVKSSRP  195 (213)
T ss_pred             CCCcHHHHHHHHHHHHHHHHh--------cCceeeeeccccccccCC
Confidence            999999999999999996322        223445679999998655

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=97.52  E-value=0.00058  Score=69.74  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=67.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+.+|...+..+...  .+..    .-.+|+|+|.|.+.++ +.+++|+..+   +..    .             
T Consensus        62 ~~~l~D~~G~~~~~~~~~~--~~~~----ad~iI~v~D~t~~~s~-~~~~~~l~~~---~~~----~-------------  114 (182)
T PTZ00133         62 KFTMWDVGGQDKLRPLWRH--YYQN----TNGLIFVVDSNDRERI-GDAREELERM---LSE----D-------------  114 (182)
T ss_pred             EEEEEECCCCHhHHHHHHH--HhcC----CCEEEEEEeCCCHHHH-HHHHHHHHHH---HhC----H-------------
Confidence            3699999999766655443  1222    2268999999998776 3333333221   110    0             


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc--CCcee--E
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN--GASLL--F  547 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y--GAsL~--f  547 (890)
                               ..                      -.+|+||||||.|+......+   .|..   .+++.+  ....+  =
T Consensus       115 ---------~~----------------------~~~piilv~NK~Dl~~~~~~~---~i~~---~l~~~~~~~~~~~~~~  157 (182)
T PTZ00133        115 ---------EL----------------------RDAVLLVFANKQDLPNAMSTT---EVTE---KLGLHSVRQRNWYIQG  157 (182)
T ss_pred             ---------hh----------------------cCCCEEEEEeCCCCCCCCCHH---HHHH---HhCCCcccCCcEEEEe
Confidence                     00                      026899999999986433322   1211   111110  01123  3


Q ss_pred             eccCChhhHHHHHHHHhhhhc
Q psy11649        548 HSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       548 tS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ||++++.|++.+++.|...+.
T Consensus       158 ~Sa~tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        158 CCATTAQGLYEGLDWLSANIK  178 (182)
T ss_pred             eeCCCCCCHHHHHHHHHHHHH
Confidence            799999999999999987653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.50  E-value=0.00018  Score=70.51  Aligned_cols=52  Identities=21%  Similarity=0.206  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      .+++++|.+|||||||+|+|++...   ...++.+.....    .....  .+.||||||.
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~i~DtpG~  138 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT----IFLTP--TITLCDCPGL  138 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE----EEeCC--CEEEEECCCc
Confidence            3899999999999999999998532   112333332211    11111  5899999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.49  E-value=0.00025  Score=71.11  Aligned_cols=114  Identities=16%  Similarity=0.140  Sum_probs=73.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+++|+++|+..+..+...  .+.    ..-++|+|+|.|.+.++ +.+..|+..+..+..                   
T Consensus        44 ~~~i~D~~G~~~~~~~~~~--~~~----~a~~ii~V~D~s~~~s~-~~~~~~l~~l~~~~~-------------------   97 (167)
T cd04161          44 EVCIFDLGGGANFRGIWVN--YYA----EAHGLVFVVDSSDDDRV-QEVKEILRELLQHPR-------------------   97 (167)
T ss_pred             EEEEEECCCcHHHHHHHHH--HHc----CCCEEEEEEECCchhHH-HHHHHHHHHHHcCcc-------------------
Confidence            4589999998666554332  122    22378999999999876 666777665543100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC--ceeEec
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA--SLLFHS  549 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA--sL~ftS  549 (890)
                                                      ..++|++||++|+|+....+.+..... .-+-.+|-..+.  .++.||
T Consensus        98 --------------------------------~~~~piliv~NK~Dl~~~~~~~~i~~~-~~l~~~~~~~~~~~~~~~~S  144 (167)
T cd04161          98 --------------------------------VSGKPILVLANKQDKKNALLGADVIEY-LSLEKLVNENKSLCHIEPCS  144 (167)
T ss_pred             --------------------------------ccCCcEEEEEeCCCCcCCCCHHHHHHh-cCcccccCCCCceEEEEEeE
Confidence                                            014899999999999754432221111 012334544443  456699


Q ss_pred             cCCh------hhHHHHHHHHh
Q psy11649        550 SLDP------GLVKRTRDILN  564 (890)
Q Consensus       550 ~K~~------~n~~~l~kyi~  564 (890)
                      ++++      .+++...++|.
T Consensus       145 a~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         145 AIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             ceeCCCCccccCHHHHHHHHh
Confidence            9997      89999998885

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01858 NGP_1 NGP-1

Probab=97.48  E-value=0.00042  Score=69.01  Aligned_cols=53  Identities=21%  Similarity=0.250  Sum_probs=35.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ..+|+++|.||||||||+|+|.+...   ...|+.+....+.    ...  ..+.+.||||.
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~----~~~--~~~~liDtPGi  157 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI----TLM--KRIYLIDCPGV  157 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE----EcC--CCEEEEECcCC
Confidence            56899999999999999999998532   2223333222111    111  24789999993

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0393|consensus

Probab=97.47  E-value=0.00059  Score=71.02  Aligned_cols=115  Identities=22%  Similarity=0.252  Sum_probs=85.3

Q ss_pred             Cce-eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccc
Q psy11649        390 ADI-CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  468 (890)
Q Consensus       390 kdi-~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~  468 (890)
                      +-| +++|+=.|+..+..|-.+  ..+...    .+++++++++|.++.+-.++|+-.++.|-.                
T Consensus        51 ~~v~L~LwDTAGqedYDrlRpl--sY~~td----vfl~cfsv~~p~S~~nv~~kW~pEi~~~cp----------------  108 (198)
T KOG0393|consen   51 KPVELGLWDTAGQEDYDRLRPL--SYPQTD----VFLLCFSVVSPESFENVKSKWIPEIKHHCP----------------  108 (198)
T ss_pred             CEEEEeeeecCCCccccccccc--CCCCCC----EEEEEEEcCChhhHHHHHhhhhHHHHhhCC----------------
Confidence            444 589999999888775433  333332    457789999999999999999876666432                


Q ss_pred             cccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHH---------HHHHHHHHHHH
Q psy11649        469 TADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKR---------IAVQCLRYLAH  539 (890)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d---------~Iq~~lR~fcl  539 (890)
                                                           ++|+|+||||.|+-.+.  ...+         ....+.+..|.
T Consensus       109 -------------------------------------~vpiiLVGtk~DLr~d~--~~~~~l~~~~~~~Vt~~~g~~lA~  149 (198)
T KOG0393|consen  109 -------------------------------------NVPIILVGTKADLRDDP--STLEKLQRQGLEPVTYEQGLELAK  149 (198)
T ss_pred             -------------------------------------CCCEEEEeehHHhhhCH--HHHHHHHhccCCcccHHHHHHHHH
Confidence                                                 48999999999999432  2222         33678999999


Q ss_pred             HcCC-ceeEeccCChhhHHHHHHHHhh
Q psy11649        540 VNGA-SLLFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       540 ~yGA-sL~ftS~K~~~n~~~l~kyi~h  565 (890)
                      +.|| ..+=||+++.+|++..+.=-..
T Consensus       150 ~iga~~y~EcSa~tq~~v~~vF~~a~~  176 (198)
T KOG0393|consen  150 EIGAVKYLECSALTQKGVKEVFDEAIR  176 (198)
T ss_pred             HhCcceeeeehhhhhCCcHHHHHHHHH
Confidence            9995 5788999999998876654433

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.46  E-value=0.00024  Score=78.30  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=38.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ..++++|+|.||||||||+|+|++...   ...|+++....+..    .  ...+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~----~--~~~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIK----L--GKGLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEE----e--CCcEEEEECCCcC
Confidence            467999999999999999999998532   22355444322111    1  1258999999973

>cd00879 Sar1 Sar1 subfamily

Probab=97.44  E-value=0.00025  Score=72.10  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHH------------HcCCceeEeccCChhhHHHHHHHHhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH------------VNGASLLFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl------------~yGAsL~ftS~K~~~n~~~l~kyi~h  565 (890)
                      ++|++||+||+|+......   +.+++.++..-.            ...+.+|-||++...+++.++++|..
T Consensus       120 ~~pvivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         120 NVPFLILGNKIDLPGAVSE---EELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             CCCEEEEEeCCCCCCCcCH---HHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence            3799999999999753333   334444442211            13356899999999999999999864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01856 YlqF YlqF

Probab=97.43  E-value=0.00042  Score=70.15  Aligned_cols=55  Identities=22%  Similarity=0.154  Sum_probs=36.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ...++++++|.+|||||||+|+|++...   ...++.+....  .....    ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~--~~~~~----~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQ--WIKIS----PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeE--EEEec----CCEEEEECCCC
Confidence            3457999999999999999999998532   22233332211  11111    25899999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.41  E-value=0.00028  Score=77.30  Aligned_cols=54  Identities=24%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ...+++|+|.||||||||+|+|++..   ....|+++....+    ...  ...+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~----~~~--~~~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW----IKL--SDGLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE----EEe--CCCEEEEECCCc
Confidence            46899999999999999999999853   1223444433211    111  125899999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=97.38  E-value=0.00032  Score=72.03  Aligned_cols=52  Identities=25%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC-----------CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN-----------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~-----------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      .+++++|.+|||||||+|.|.+..           ....|+++.+.    .......  .+.|+||||.
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~----~~~~~~~--~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDL----IKIPLGN--GKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeee----EEEecCC--CCEEEeCcCC
Confidence            579999999999999999999732           12233433331    1111111  4799999993

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0098|consensus

Probab=97.37  E-value=0.00046  Score=70.59  Aligned_cols=132  Identities=20%  Similarity=0.209  Sum_probs=98.9

Q ss_pred             CCCCceeeccccccccccccCcccccCcee-EEEEeCCCcccccccccccccccccccce-EEEEEEeCCCchhHHHHHH
Q psy11649        364 DYNKPIFVPFGTDSVASIEGTTQYVTADIC-HLWELGSGTSRLEVASLFSSFSLTAQSGF-TLVLMLDLSRLNSLWTEAE  441 (890)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~kdi~-~vW~L~G~~~~~~Ll~~~~al~~~~~~~~-~viivlDlS~Pw~l~~sL~  441 (890)
                      +|.--|-|-||-+-++       +-.|.|- +||+-+|+.++..+       +..=.+++ =++||.|+++..++ +.|.
T Consensus        34 ~hd~TiGvefg~r~~~-------id~k~IKlqiwDtaGqe~frsv-------~~syYr~a~GalLVydit~r~sF-~hL~   98 (216)
T KOG0098|consen   34 VHDLTIGVEFGARMVT-------IDGKQIKLQIWDTAGQESFRSV-------TRSYYRGAAGALLVYDITRRESF-NHLT   98 (216)
T ss_pred             cccceeeeeeceeEEE-------EcCceEEEEEEecCCcHHHHHH-------HHHHhccCcceEEEEEccchhhH-HHHH
Confidence            4445677777766543       2345564 99999999777653       33344433 38999999999999 9999


Q ss_pred             HHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEecccccc-
Q psy11649        442 TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFE-  520 (890)
Q Consensus       442 ~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~-  520 (890)
                      .|+.-+|.|...                                                    .+-|+++|+|+|+-. 
T Consensus        99 ~wL~D~rq~~~~----------------------------------------------------NmvImLiGNKsDL~~r  126 (216)
T KOG0098|consen   99 SWLEDARQHSNE----------------------------------------------------NMVIMLIGNKSDLEAR  126 (216)
T ss_pred             HHHHHHHHhcCC----------------------------------------------------CcEEEEEcchhhhhcc
Confidence            999999987632                                                    144799999999963 


Q ss_pred             -CCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        521 -NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       521 -~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                       +..+|       -=+-||.++|---|=||+|.+.|+...+.=+-+-+|.
T Consensus       127 R~Vs~E-------EGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~  169 (216)
T KOG0098|consen  127 REVSKE-------EGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYR  169 (216)
T ss_pred             ccccHH-------HHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence             33333       3467899999888889999999999988877777775

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.34  E-value=0.00052  Score=64.24  Aligned_cols=50  Identities=18%  Similarity=0.311  Sum_probs=34.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHH
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRA  449 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~  449 (890)
                      +++|+.+|+..+......  .    .-...++|||+|+|+|.++ +.+..|++.++.
T Consensus        52 ~~~~d~~g~~~~~~~~~~--~----~~~~d~~ilv~D~s~~~s~-~~~~~~~~~l~~  101 (119)
T PF08477_consen   52 LQFWDFGGQEEFYSQHQF--F----LKKADAVILVYDLSDPESL-EYLSQLLKWLKN  101 (119)
T ss_dssp             EEEEEESSSHCHHCTSHH--H----HHHSCEEEEEEECCGHHHH-HHHHHHHHHHHH
T ss_pred             EEEEecCccceecccccc--h----hhcCcEEEEEEcCCChHHH-HHHHHHHHHHHH
Confidence            889999999655544333  1    1223489999999999988 666555555554

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.33  E-value=0.0011  Score=69.20  Aligned_cols=59  Identities=10%  Similarity=0.061  Sum_probs=45.5

Q ss_pred             cEEEEEeccccccCCChhHHHHHHHHHHHHHHHc---CCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y---GAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      |+|||+||.|+.   +++......+.++.++..+   ++..|++|++.+.|++.|+.+|..++.-
T Consensus       139 ~iiivvNK~Dl~---~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         139 HIIIVQNKIDLV---KEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             cEEEEEEchhcc---CHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            689999999996   3333333345566666655   6789999999999999999999987654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=97.28  E-value=0.0013  Score=74.27  Aligned_cols=91  Identities=13%  Similarity=0.130  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccccc
Q psy11649        423 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLI  502 (890)
Q Consensus       423 ~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~  502 (890)
                      ++++|+|+|.+.+ ++.++.|...++.+...                            +                    
T Consensus       239 vlI~ViD~s~~~s-~e~~~~~~~EL~~~~~~----------------------------L--------------------  269 (335)
T PRK12299        239 LLLHLVDIEAVDP-VEDYKTIRNELEKYSPE----------------------------L--------------------  269 (335)
T ss_pred             EEEEEEcCCCCCC-HHHHHHHHHHHHHhhhh----------------------------c--------------------
Confidence            8999999998775 48889998887765332                            0                    


Q ss_pred             ccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        503 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       503 ~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                        ...|+|||+||+|+...   +.  .....++.++...+...|++|++...|++.++++|...+..
T Consensus       270 --~~kp~IIV~NKiDL~~~---~~--~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        270 --ADKPRILVLNKIDLLDE---EE--EREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             --ccCCeEEEEECcccCCc---hh--HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence              13689999999998632   11  11223444566678899999999999999999999877643

>KOG0081|consensus

Probab=97.27  E-value=0.00083  Score=66.93  Aligned_cols=113  Identities=16%  Similarity=0.220  Sum_probs=86.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccce-EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGF-TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~-~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      -+.+|+-.|+..++.|       +..=++|. -+++++|||.--+++ .+..|+++++.|.=-                 
T Consensus        68 hLQlWDTAGQERFRSL-------TTAFfRDAMGFlLiFDlT~eqSFL-nvrnWlSQL~~hAYc-----------------  122 (219)
T KOG0081|consen   68 HLQLWDTAGQERFRSL-------TTAFFRDAMGFLLIFDLTSEQSFL-NVRNWLSQLQTHAYC-----------------  122 (219)
T ss_pred             EEeeeccccHHHHHHH-------HHHHHHhhccceEEEeccchHHHH-HHHHHHHHHHHhhcc-----------------
Confidence            3578999999766643       33334433 489999999999995 468999999998653                 


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                               +               .          -.||+.|+|+|+-     +++..-..+.+.+|-+||-+-|=||+
T Consensus       123 ---------E---------------~----------PDivlcGNK~DL~-----~~R~Vs~~qa~~La~kyglPYfETSA  163 (219)
T KOG0081|consen  123 ---------E---------------N----------PDIVLCGNKADLE-----DQRVVSEDQAAALADKYGLPYFETSA  163 (219)
T ss_pred             ---------C---------------C----------CCEEEEcCccchh-----hhhhhhHHHHHHHHHHhCCCeeeecc
Confidence                     0               0          1478999999986     23344466788999999999999999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      -.+.|+.+.-..++-++.
T Consensus       164 ~tg~Nv~kave~LldlvM  181 (219)
T KOG0081|consen  164 CTGTNVEKAVELLLDLVM  181 (219)
T ss_pred             ccCcCHHHHHHHHHHHHH
Confidence            999999887777766554

>KOG0458|consensus

Probab=97.26  E-value=0.0015  Score=76.71  Aligned_cols=159  Identities=17%  Similarity=0.113  Sum_probs=96.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC--C-------------------------------CCCCCCccceeEEEEEEec
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK--N-------------------------------DTPKPTLALEYIYARKSGK   78 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~-------------------------------~~~kptigvdY~f~~~~g~   78 (890)
                      .-....++++|.-.+|||||+-+|+..  .                               +....+++++-.  +. --
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~--~~-~f  250 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVK--TT-WF  250 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEee--eE-EE
Confidence            335689999999999999999888651  0                               001122222211  11 11


Q ss_pred             cccceEEEEEEcCCCcch-hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649         79 TVMKDICHLWELGSGTSR-LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE  157 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~-~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~  157 (890)
                      ......+.|.|.||+..| ..++.-..       .+|+.|+|+|++-- .|...++ -....+++..-            
T Consensus       251 es~~~~~tliDaPGhkdFi~nmi~g~s-------qaD~avLvvd~s~~-~FE~gfd-~~gQtrEha~l------------  309 (603)
T KOG0458|consen  251 ESKSKIVTLIDAPGHKDFIPNMISGAS-------QADVAVLVVDASTG-EFESGFD-PGGQTREHALL------------  309 (603)
T ss_pred             ecCceeEEEecCCCccccchhhhcccc-------ccceEEEEEECCcc-hhhhccC-CCCchHHHHHH------------
Confidence            122237899999996554 22222221       39999999998752 3322222 22233333211            


Q ss_pred             cccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHH-HHcC-----CeEEEEeccCCCCHHHH
Q psy11649        158 HFRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNG-----ASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       158 ~~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~~G-----a~l~etSAK~~~nId~L  228 (890)
                                   ++.+| --++|+.||+|++ +-+.+..+.|...+..|- +..|     +.|++||+.+|+|+-..
T Consensus       310 -------------lr~Lgi~qlivaiNKmD~V-~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  310 -------------LRSLGISQLIVAINKMDLV-SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             -------------HHHcCcceEEEEeeccccc-CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence                         22223 2478899999986 344456677777777777 4445     36999999999998765

>cd01878 HflX HflX subfamily

Probab=97.25  E-value=0.00089  Score=69.11  Aligned_cols=52  Identities=17%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|||+||+|+...-.   ..       .++...+...|++|++.+.|++.++.+|..++
T Consensus       153 ~~~viiV~NK~Dl~~~~~---~~-------~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         153 DIPMILVLNKIDLLDDEE---LE-------ERLEAGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             CCCEEEEEEccccCChHH---HH-------HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence            479999999999974311   11       44566788899999999999999999998754

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.25  E-value=0.002  Score=66.80  Aligned_cols=53  Identities=13%  Similarity=0.040  Sum_probs=36.2

Q ss_pred             EEEEeecccCCCCCCcchhhhhHHHHHHHHHH--cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        178 LILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--NGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       178 iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~--~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      =++|.||.|+..     .-....+..++-+++  -+++++++|+++|+|++++.+++...
T Consensus       145 DllVInK~DLa~-----~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         145 DLLVINKTDLAP-----YVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             eEEEEehHHhHH-----HhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            378999999963     111111222333333  25889999999999999998888654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.22  E-value=0.0005  Score=68.40  Aligned_cols=54  Identities=20%  Similarity=0.193  Sum_probs=37.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ...+++++|.+|||||||+|.|++...   ...+.++.+.....    .  ...+.+.||||.
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~----~--~~~~~liDtPG~  155 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK----L--DNKIKLLDTPGI  155 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE----e--cCCEEEEECCCC
Confidence            467899999999999999999998531   22244443322211    1  125899999993

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=97.22  E-value=0.0014  Score=67.01  Aligned_cols=113  Identities=15%  Similarity=0.109  Sum_probs=70.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+++|...+..+...  .+.  +  .-.+++|+|.+.|.++ .....|+..+-+...                    
T Consensus        63 ~~~~D~~G~~~~~~~~~~--~~~--~--ad~ii~vvD~~~~~~~-~~~~~~l~~l~~~~~--------------------  115 (184)
T smart00178       63 FTTFDLGGHQQARRLWKD--YFP--E--VNGIVYLVDAYDKERF-AESKRELDALLSDEE--------------------  115 (184)
T ss_pred             EEEEECCCCHHHHHHHHH--HhC--C--CCEEEEEEECCcHHHH-HHHHHHHHHHHcChh--------------------
Confidence            589999998766555444  222  2  2378999999999776 444444332211000                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH--HHH-----HHcC-Cc
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR--YLA-----HVNG-AS  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR--~fc-----l~yG-As  544 (890)
                                                     -.++|++||+||+|+-...+.++   |...+.  ...     .... -.
T Consensus       116 -------------------------------~~~~piliv~NK~Dl~~~~~~~~---i~~~l~l~~~~~~~~~~~~~~~~  161 (184)
T smart00178      116 -------------------------------LATVPFLILGNKIDAPYAASEDE---LRYALGLTNTTGSKGKVGVRPLE  161 (184)
T ss_pred             -------------------------------hcCCCEEEEEeCccccCCCCHHH---HHHHcCCCcccccccccCCceeE
Confidence                                           01489999999999865444443   222221  000     0111 23


Q ss_pred             eeEeccCChhhHHHHHHHHhhh
Q psy11649        545 LLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       545 L~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      ++.||++.+.+++.+.++|..+
T Consensus       162 i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      162 VFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEEeecccCCChHHHHHHHHhh
Confidence            8999999999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.0023  Score=74.18  Aligned_cols=139  Identities=20%  Similarity=0.246  Sum_probs=81.9

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSS  105 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~  105 (890)
                      ..+..+=|+|+|+||+|||||+..|..+-     ......++      ...|+.   .++.+.++|.  .+.+++....-
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~---RRiTflEcp~--Dl~~miDvaKI  133 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKT---RRITFLECPS--DLHQMIDVAKI  133 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------Eeecce---eEEEEEeChH--HHHHHHhHHHh
Confidence            35667788999999999999999887631     11112222      122322   2799999994  45666666522


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE-EEeec
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI-LIGGK  184 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI-VVgNK  184 (890)
                             +|.|++.+|..-.-.+ +. ..++..+..                                .|.|-| -|++-
T Consensus       134 -------aDLVlLlIdgnfGfEM-ET-mEFLnil~~--------------------------------HGmPrvlgV~Th  172 (1077)
T COG5192         134 -------ADLVLLLIDGNFGFEM-ET-MEFLNILIS--------------------------------HGMPRVLGVVTH  172 (1077)
T ss_pred             -------hheeEEEeccccCcee-hH-HHHHHHHhh--------------------------------cCCCceEEEEee
Confidence                   8999999998764443 22 233332222                                255654 48999


Q ss_pred             ccCCCCCCcchhhhhH-HHHHHHHHHc-CCeEEEEeccCC
Q psy11649        185 YDLFENLEPNKKRIAV-QCLRYLAHVN-GASLLFHSSLDP  222 (890)
Q Consensus       185 ~Dl~~d~d~e~r~~i~-~~lr~la~~~-Ga~l~etSAK~~  222 (890)
                      .|++.+.+. .|..-. ..-|.|..-| |+.+|+.|...+
T Consensus       173 lDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         173 LDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             cccccChHH-HHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence            999853221 111100 1112333333 899999996543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.17  E-value=0.0018  Score=64.97  Aligned_cols=59  Identities=14%  Similarity=0.053  Sum_probs=43.8

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH--------------cCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV--------------NGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~--------------yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|++||+||+|+..   ++..+.+...++.....              .+...|++|++++.|++.++.+|.+++
T Consensus       114 ~~~i~iv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         114 GLPIIVAINKIDRVG---EEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             CCCeEEEEECCCCcc---hhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            478999999999995   23333333334433333              468889999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.15  E-value=0.0019  Score=69.82  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=34.1

Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH-------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~-------~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.=++|+||+|+.      .-+....+++...+.       +.-+++.|||.++.|+++|.+.|....
T Consensus       168 iaDi~vVNKaD~~------gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  168 IADIFVVNKADRP------GADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             H-SEEEEE--SHH------HHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             hccEEEEeCCChH------HHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4558999999973      222223333333332       124799999999999999998887653

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>smart00275 G_alpha G protein alpha subunit

Probab=97.13  E-value=0.002  Score=72.91  Aligned_cols=125  Identities=16%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchH------HHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLW------TEAETFLAKFRAIFESNESVREKRGSF  156 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~------~~L~~wlq~I~e~~~~ll~~~~~~~~l  156 (890)
                      ..+.+||++|+...+..+..+    +.  ++++||+|+|+++.....      +.+..-+..+...+..           
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~----f~--~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~-----------  246 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHC----FD--NVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS-----------  246 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHH----hC--CCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC-----------
Confidence            368999999999888888887    22  689999999999743110      1122222222222211           


Q ss_pred             ccccccccccccccccCCCCcEEEEeecccCCCC-------------CCcc-----hhhhhHHHHHHHHHH---cCCeEE
Q psy11649        157 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-------------LEPN-----KKRIAVQCLRYLAHV---NGASLL  215 (890)
Q Consensus       157 ~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-------------~d~e-----~r~~i~~~lr~la~~---~Ga~l~  215 (890)
                                    -.-.++|++|++||.|++..             +...     ..+.+......+...   ..+-..
T Consensus       247 --------------~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h  312 (342)
T smart00275      247 --------------RWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHH  312 (342)
T ss_pred             --------------ccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEE
Confidence                          01125899999999998642             1110     011222222222111   123467


Q ss_pred             EEeccCCCCHHHHHHHHHHHHhc
Q psy11649        216 FHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       216 etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +|+|.+-.++..+.+.+...+..
T Consensus       313 ~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      313 FTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             EeeecccHHHHHHHHHHHHHHHH
Confidence            78888888888887777766643

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0395|consensus

Probab=97.10  E-value=0.0046  Score=64.57  Aligned_cols=115  Identities=22%  Similarity=0.258  Sum_probs=77.3

Q ss_pred             ccCceeEEEEeCCCc--ccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccc
Q psy11649        388 VTADICHLWELGSGT--SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE  465 (890)
Q Consensus       388 ~~kdi~~vW~L~G~~--~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~  465 (890)
                      .+..+|++++||...  .+..+...    .  ....-..++|.+.+.+.++ +.++.+.+++ .++..            
T Consensus        46 v~~~~~~l~ilDt~g~~~~~~~~~~----~--~~~~~gF~lVysitd~~SF-~~~~~l~~~I-~r~~~------------  105 (196)
T KOG0395|consen   46 VDGEVCMLEILDTAGQEEFSAMRDL----Y--IRNGDGFLLVYSITDRSSF-EEAKQLREQI-LRVKG------------  105 (196)
T ss_pred             ECCEEEEEEEEcCCCcccChHHHHH----h--hccCcEEEEEEECCCHHHH-HHHHHHHHHH-HHhhC------------
Confidence            346667666666543  22222222    1  1122367999999999999 6666666666 22221            


Q ss_pred             ccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCce
Q psy11649        466 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASL  545 (890)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL  545 (890)
                                      .           +           -+|+|+||+|+|+...     +..-.+..+.+|..++++.
T Consensus       106 ----------------~-----------~-----------~~PivlVGNK~Dl~~~-----R~V~~eeg~~la~~~~~~f  142 (196)
T KOG0395|consen  106 ----------------R-----------D-----------DVPIILVGNKCDLERE-----RQVSEEEGKALARSWGCAF  142 (196)
T ss_pred             ----------------c-----------C-----------CCCEEEEEEcccchhc-----cccCHHHHHHHHHhcCCcE
Confidence                            0           0           1899999999999852     2223333566699999999


Q ss_pred             eEeccCChhhHHHHHHHHhh
Q psy11649        546 LFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       546 ~ftS~K~~~n~~~l~kyi~h  565 (890)
                      +=||+|...|++.++.-|.+
T Consensus       143 ~E~Sak~~~~v~~~F~~L~r  162 (196)
T KOG0395|consen  143 IETSAKLNYNVDEVFYELVR  162 (196)
T ss_pred             EEeeccCCcCHHHHHHHHHH
Confidence            99999999999998888877

>KOG0468|consensus

Probab=97.09  E-value=0.0022  Score=75.77  Aligned_cols=116  Identities=14%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCc----------------cceeEEE--EEEe-ccccc-eEEEEEEc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTL----------------ALEYIYA--RKSG-KTVMK-DICHLWEL   90 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kpti----------------gvdY~f~--~~~g-~~~~k-~~l~IwDl   90 (890)
                      ...-.+|.++|.-..|||+|+..|.++.. ...+..                |+...-.  +... ....+ ..++|.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34457899999999999999999987421 000000                1111000  1111 11222 27899999


Q ss_pred             CCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         91 GSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        91 pG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      ||+-.|.+-.... +.       +|++++|+|+-.--.+  +.++.+.   ..+++                        
T Consensus       205 PGHVnF~DE~ta~l~~-------sDgvVlvvDv~EGVml--ntEr~ik---haiq~------------------------  248 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRL-------SDGVVLVVDVAEGVML--NTERIIK---HAIQN------------------------  248 (971)
T ss_pred             CCcccchHHHHHHhhh-------cceEEEEEEcccCcee--eHHHHHH---HHHhc------------------------
Confidence            9998886655544 43       8999999999887666  5454433   32322                        


Q ss_pred             cccCCCCcEEEEeecccCC
Q psy11649        170 LIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       170 li~~l~IPiIVVgNK~Dl~  188 (890)
                           ..|+++|.||+|++
T Consensus       249 -----~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  249 -----RLPIVVVINKVDRL  262 (971)
T ss_pred             -----cCcEEEEEehhHHH
Confidence                 58999999999974

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.09  E-value=0.00074  Score=75.71  Aligned_cols=55  Identities=24%  Similarity=0.202  Sum_probs=38.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ...++.|||-||||||||||+|.++.   ....|+++-....    .....  .+.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~----i~~~~--~i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW----IKLDD--GIYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE----EEcCC--CeEEecCCCcC
Confidence            35779999999999999999999963   2344665544211    11111  48999999963

>cd01889 SelB_euk SelB subfamily

Probab=97.09  E-value=0.0021  Score=66.00  Aligned_cols=63  Identities=21%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             CCcEEEEEeccccccCCC-hhHHHHHHHHHHH-HHH--HcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLE-PNKKRIAVQCLRY-LAH--VNGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~-~E~~d~Iq~~lR~-fcl--~yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++|++||+||+|+...-+ .+..+.+++.++. ++.  ..+...|++|++.+.|++.|+.+|.+.+-
T Consensus       120 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         120 CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            578999999999973211 1123344444433 221  24678999999999999999999998763

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=97.08  E-value=0.003  Score=71.13  Aligned_cols=89  Identities=18%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             EEEEEEeCCCch--hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccc
Q psy11649        423 TLVLMLDLSRLN--SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKG  500 (890)
Q Consensus       423 ~viivlDlS~Pw--~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  500 (890)
                      ++++|+|++.+.  +.+++++.|.+.+......                            +                  
T Consensus       238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~----------------------------l------------------  271 (329)
T TIGR02729       238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE----------------------------L------------------  271 (329)
T ss_pred             EEEEEEcCccccccCHHHHHHHHHHHHHHhhhh----------------------------h------------------
Confidence            899999999872  4558888888777654321                            0                  


Q ss_pred             ccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        501 LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       501 l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                          ...|+|||+||+|+...   +.   +++.+..++..+|..+|++|++...+++.++.+|...+
T Consensus       272 ----~~kp~IIV~NK~DL~~~---~~---~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       272 ----AEKPRIVVLNKIDLLDE---EE---LAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             ----ccCCEEEEEeCccCCCh---HH---HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence                13689999999998632   22   34445566777788999999999999999999987653

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=97.05  E-value=0.003  Score=64.21  Aligned_cols=115  Identities=16%  Similarity=0.168  Sum_probs=74.8

Q ss_pred             CceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649        390 ADICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  469 (890)
Q Consensus       390 kdi~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~  469 (890)
                      +-.+++|++||+..+..+-+..  ...    .-.||+|+|-|.+..+-++.+...+.+    ..    .           
T Consensus        57 ~~~~~~~d~gG~~~~~~~w~~y--~~~----~~~iIfVvDssd~~~l~e~~~~L~~ll----~~----~-----------  111 (175)
T PF00025_consen   57 GYSLTIWDLGGQESFRPLWKSY--FQN----ADGIIFVVDSSDPERLQEAKEELKELL----ND----P-----------  111 (175)
T ss_dssp             TEEEEEEEESSSGGGGGGGGGG--HTT----ESEEEEEEETTGGGGHHHHHHHHHHHH----TS----G-----------
T ss_pred             cEEEEEEeccccccccccceee--ccc----cceeEEEEecccceeecccccchhhhc----ch----h-----------
Confidence            3456899999998888776662  221    237999999999987633333222111    10    0           


Q ss_pred             ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH--HcCCceeE
Q psy11649        470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH--VNGASLLF  547 (890)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl--~yGAsL~f  547 (890)
                                                       ..-++|++|+++|.|.-..++.++....   +.---+  ...-.++-
T Consensus       112 ---------------------------------~~~~~piLIl~NK~D~~~~~~~~~i~~~---l~l~~l~~~~~~~v~~  155 (175)
T PF00025_consen  112 ---------------------------------ELKDIPILILANKQDLPDAMSEEEIKEY---LGLEKLKNKRPWSVFS  155 (175)
T ss_dssp             ---------------------------------GGTTSEEEEEEESTTSTTSSTHHHHHHH---TTGGGTTSSSCEEEEE
T ss_pred             ---------------------------------hcccceEEEEeccccccCcchhhHHHhh---hhhhhcccCCceEEEe
Confidence                                             0015899999999998866665554321   111112  24456888


Q ss_pred             eccCChhhHHHHHHHHhh
Q psy11649        548 HSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       548 tS~K~~~n~~~l~kyi~h  565 (890)
                      ||++.+.+++...+.|..
T Consensus       156 ~sa~~g~Gv~e~l~WL~~  173 (175)
T PF00025_consen  156 CSAKTGEGVDEGLEWLIE  173 (175)
T ss_dssp             EBTTTTBTHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHh
Confidence            999999999998888764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.03  E-value=0.0019  Score=63.26  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             cCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .+|++++|+|++++.+..+ .+..|+...                                 ..+.|+++|+||+|+.. 
T Consensus        11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---------------------------------~~~k~~iivlNK~DL~~-   56 (141)
T cd01857          11 RSDIVVQIVDARNPLLFRPPDLERYVKEV---------------------------------DPRKKNILLLNKADLLT-   56 (141)
T ss_pred             hCCEEEEEEEccCCcccCCHHHHHHHHhc---------------------------------cCCCcEEEEEechhcCC-
Confidence            4999999999999876421 333333210                                 02579999999999852 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCC
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGL  224 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~n  224 (890)
                          +.. . ....+.....+..++++||+++.+
T Consensus        57 ----~~~-~-~~~~~~~~~~~~~ii~iSa~~~~~   84 (141)
T cd01857          57 ----EEQ-R-KAWAEYFKKEGIVVVFFSALKENA   84 (141)
T ss_pred             ----HHH-H-HHHHHHHHhcCCeEEEEEecCCCc
Confidence                111 1 233344556678899999998875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.02  E-value=0.0034  Score=59.75  Aligned_cols=108  Identities=18%  Similarity=0.170  Sum_probs=69.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCc-hhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRL-NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~P-w~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +.+|+.+|...+..+...  . ...   ...++.++|++-. .++-+.++.|+..+....+                   
T Consensus        52 ~~~~D~~G~~~~~~~~~~--~-~~~---~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-------------------  106 (161)
T TIGR00231        52 FNLLDTAGQEDYRAIRRL--Y-YRA---VESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-------------------  106 (161)
T ss_pred             EEEEECCCcccchHHHHH--H-Hhh---hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-------------------
Confidence            368999997666555444  1 111   2267788999887 6664444455554433211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      . ++|++||+||.|+...-      ...+..+.+....+-..+.+|++
T Consensus       107 --------------------------------~-~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~~~~~~~sa~  147 (161)
T TIGR00231       107 --------------------------------S-NVPIILVGNKIDLRDAK------LKTHVAFLFAKLNGEPIIPLSAE  147 (161)
T ss_pred             --------------------------------c-CCcEEEEEEcccCCcch------hhHHHHHHHhhccCCceEEeecC
Confidence                                            0 47899999999997421      22233333334445679999999


Q ss_pred             ChhhHHHHHHHHh
Q psy11649        552 DPGLVKRTRDILN  564 (890)
Q Consensus       552 ~~~n~~~l~kyi~  564 (890)
                      ++.+++.++++|.
T Consensus       148 ~~~gv~~~~~~l~  160 (161)
T TIGR00231       148 TGKNIDSAFKIVE  160 (161)
T ss_pred             CCCCHHHHHHHhh
Confidence            9999999998874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04155 Arl3 Arl3 subfamily

Probab=97.01  E-value=0.0042  Score=61.83  Aligned_cols=113  Identities=14%  Similarity=0.117  Sum_probs=65.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+.+|...+......  .+.  .  .-.+++|+|.+.+..+ +....|+..+.....                   
T Consensus        59 ~~~~~D~~G~~~~~~~~~~--~~~--~--~~~ii~v~D~~~~~~~-~~~~~~~~~~~~~~~-------------------  112 (173)
T cd04155          59 KLNVWDIGGQRAIRPYWRN--YFE--N--TDCLIYVIDSADKKRL-EEAGAELVELLEEEK-------------------  112 (173)
T ss_pred             EEEEEECCCCHHHHHHHHH--Hhc--C--CCEEEEEEeCCCHHHH-HHHHHHHHHHHhChh-------------------
Confidence            3578999998554433332  111  1  1268999999998876 443444333221100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~  550 (890)
                                                      ..++|++||++|+|.....+   .+.+.+.+....+... ...+.+|+
T Consensus       113 --------------------------------~~~~p~ivv~nK~D~~~~~~---~~~i~~~l~~~~~~~~~~~~~~~Sa  157 (173)
T cd04155         113 --------------------------------LAGVPVLVFANKQDLATAAP---AEEIAEALNLHDLRDRTWHIQACSA  157 (173)
T ss_pred             --------------------------------hcCCCEEEEEECCCCccCCC---HHHHHHHcCCcccCCCeEEEEEeEC
Confidence                                            01489999999999864322   1222222221111111 12578999


Q ss_pred             CChhhHHHHHHHHhh
Q psy11649        551 LDPGLVKRTRDILNH  565 (890)
Q Consensus       551 K~~~n~~~l~kyi~h  565 (890)
                      +.+.|++.++++|.+
T Consensus       158 ~~~~gi~~~~~~l~~  172 (173)
T cd04155         158 KTGEGLQEGMNWVCK  172 (173)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999998864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.0057  Score=67.49  Aligned_cols=161  Identities=15%  Similarity=0.153  Sum_probs=97.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC-----CCCCCCCcc--ceeEEE---------------EEE-----ecccc-ceEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK-----NDTPKPTLA--LEYIYA---------------RKS-----GKTVM-KDIC   85 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~-----~~~~kptig--vdY~f~---------------~~~-----g~~~~-k~~l   85 (890)
                      .+.+|-++|----|||||..+|++-     .+..+-+++  +.|.-.               ...     +.... -..+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            4789999999999999999999982     122222222  122111               111     00000 1178


Q ss_pred             EEEEcCCCcchh-hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccc
Q psy11649         86 HLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  164 (890)
Q Consensus        86 ~IwDlpG~~~~~-~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~  164 (890)
                      .+.|.||++-+- .++   ....+    -|++++|++.+.+.--        -+-++|+..+.                 
T Consensus        89 SfVDaPGHe~LMATML---sGAAl----MDgAlLvIaANEpcPQ--------PQT~EHl~Ale-----------------  136 (415)
T COG5257          89 SFVDAPGHETLMATML---SGAAL----MDGALLVIAANEPCPQ--------PQTREHLMALE-----------------  136 (415)
T ss_pred             EEeeCCchHHHHHHHh---cchhh----hcceEEEEecCCCCCC--------CchHHHHHHHh-----------------
Confidence            999999986431 111   11112    3789999998875432        11122222100                 


Q ss_pred             ccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        165 HRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       165 ~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                            +.. -.-+++|-||+|+..   .|+.....+++.+|.+-   -+++++.+||..+.||+.|.++|...+
T Consensus       137 ------Iig-ik~iiIvQNKIDlV~---~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         137 ------IIG-IKNIIIVQNKIDLVS---RERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             ------hhc-cceEEEEecccceec---HHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence                  101 134899999999973   22323334445555543   368999999999999999999999987

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=97.00  E-value=0.005  Score=59.95  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=42.3

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      ++|+|+|+||.|+.....      +......++..+|+..|.+|++.+.|++.++..|...
T Consensus       101 ~~~~iiv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879         101 GLPVVVALNMIDEAEKRG------IKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             CCCEEEEEehhhhccccc------chhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            478999999999974321      1122335666679999999999999999999988764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=96.99  E-value=0.0067  Score=74.27  Aligned_cols=113  Identities=14%  Similarity=0.033  Sum_probs=72.8

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC------CC--------------CCCccceeEEEEEEeccccceEEEEEEcCC
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND------TP--------------KPTLALEYIYARKSGKTVMKDICHLWELGS   92 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~------~~--------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG   92 (890)
                      ..-.+|.++|.-.+|||||..+++-..+      +.              .-++++.-.  ..........+++++||||
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~sa--a~s~~~~~~~~iNlIDTPG   85 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSA--ATTLFWKGDYRINLIDTPG   85 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeee--eeEEEEcCceEEEEeCCCC
Confidence            3467899999999999999999875211      11              111222211  1111111135899999999


Q ss_pred             CcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649         93 GTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus        93 ~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                      +-.|..-+... +-       .|++|+|+|...--.. ..-.-|.+.                                 
T Consensus        86 HVDFt~EV~rslrv-------lDgavvVvdaveGV~~-QTEtv~rqa---------------------------------  124 (697)
T COG0480          86 HVDFTIEVERSLRV-------LDGAVVVVDAVEGVEP-QTETVWRQA---------------------------------  124 (697)
T ss_pred             ccccHHHHHHHHHh-------hcceEEEEECCCCeee-cHHHHHHHH---------------------------------
Confidence            98886655544 43       8999999999874432 222334431                                 


Q ss_pred             cCCCCcEEEEeecccCC
Q psy11649        172 RTFPVPLILIGGKYDLF  188 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~  188 (890)
                      ...++|.+++.||+|..
T Consensus       125 ~~~~vp~i~fiNKmDR~  141 (697)
T COG0480         125 DKYGVPRILFVNKMDRL  141 (697)
T ss_pred             hhcCCCeEEEEECcccc
Confidence            12379999999999986

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=96.97  E-value=0.0035  Score=62.18  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=66.7

Q ss_pred             EEEEEEeCCCch-----hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcc
Q psy11649        423 TLVLMLDLSRLN-----SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  497 (890)
Q Consensus       423 ~viivlDlS~Pw-----~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (890)
                      ++++|+|.+.+.     ...+.++.|...+..+.....                                          
T Consensus        77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------  114 (176)
T cd01881          77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETI------------------------------------------  114 (176)
T ss_pred             EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhH------------------------------------------
Confidence            799999999994     455888888776654322100                                          


Q ss_pred             cccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        498 DKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       498 d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                         .....++|++||+||+|+...   +....+.  .+..+...+...+.+|++.+.+++.+++.|.+.+
T Consensus       115 ---~~~~~~~p~ivv~NK~Dl~~~---~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         115 ---LGLLTAKPVIYVLNKIDLDDA---EELEEEL--VRELALEEGAEVVPISAKTEEGLDELIRAIYELL  176 (176)
T ss_pred             ---HHHHhhCCeEEEEEchhcCch---hHHHHHH--HHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence               000124899999999999742   2221111  5666777889999999999999999999887653

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG2655|consensus

Probab=96.91  E-value=0.0076  Score=68.07  Aligned_cols=146  Identities=13%  Similarity=0.082  Sum_probs=81.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--C---------CCCCCccceeEEEEEEe-ccccceEEEEEEcCCCcch-----
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--D---------TPKPTLALEYIYARKSG-KTVMKDICHLWELGSGTSR-----   96 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~---------~~kptigvdY~f~~~~g-~~~~k~~l~IwDlpG~~~~-----   96 (890)
                      -+++++++|++|.|||||+|.|+..+  .         ....|+.++  ..+... ...-+..+.|.||||--..     
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~--~~~~~iee~g~~l~LtvidtPGfGD~vdns~   97 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIE--STKVEIEENGVKLNLTVIDTPGFGDAVDNSN   97 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceee--eeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence            47999999999999999999998752  1         122233433  212222 2222338999999994211     


Q ss_pred             ---------hhHHhhh--------hccc--cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649         97 ---------LEVASLF--------SSFS--LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE  157 (890)
Q Consensus        97 ---------~~Li~~~--------r~~~--~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~  157 (890)
                               .+-...|        |...  -+   .+++++.+.-+.- .+ .-+.  +..+++..              
T Consensus        98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~R---VH~cLYFI~P~gh-gL-~p~D--i~~Mk~l~--------------  156 (366)
T KOG2655|consen   98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNR---VHCCLYFISPTGH-GL-KPLD--IEFMKKLS--------------  156 (366)
T ss_pred             cchhhhHHHHHHHHHHHhhhccCCcccccCCc---eEEEEEEeCCCCC-CC-cHhh--HHHHHHHh--------------
Confidence                     1111111        2111  13   5677777653321 11 1111  01111111              


Q ss_pred             cccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC
Q psy11649        158 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  221 (890)
Q Consensus       158 ~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~  221 (890)
                                      ..+.+|-|..|+|.+.   .++.......+++-...+++.++....-.
T Consensus       157 ----------------~~vNiIPVI~KaD~lT---~~El~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  157 ----------------KKVNLIPVIAKADTLT---KDELNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             ----------------ccccccceeeccccCC---HHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence                            1467888899999873   34555566677777788888876655443

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=96.91  E-value=0.0039  Score=75.31  Aligned_cols=62  Identities=13%  Similarity=0.096  Sum_probs=50.0

Q ss_pred             CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHc----CCceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649        506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y----GAsL~ftS~K~~~n~~~l~kyi~hr~fg~  570 (890)
                      |+| +|||+||+|+.   +++..+.+...++.++..+    ++..|.+|++.+.|++.++++|...+=..
T Consensus       102 gi~~iIVVlNK~Dlv---~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       102 GIPHTIVVITKADRV---NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             CCCeEEEEEECCCCC---CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence            678 99999999997   4555566677778887776    57899999999999999999887655443

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=96.91  E-value=0.0028  Score=82.36  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCCCC------------CCCccceeEEEEEEeccccceEEEEEEcCCCcc----------
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKNDTP------------KPTLALEYIYARKSGKTVMKDICHLWELGSGTS----------   95 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~~~~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----------   95 (890)
                      .+|||++|+||||++++- |-....            .+|-.+++.|         ....-++|++|.+-          
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf---------~~~avliDtaG~y~~~~~~~~~~~  183 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWF---------TDEAVLIDTAGRYTTQDSDPEEDA  183 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEe---------cCCEEEEcCCCccccCCCcccccH
Confidence            699999999999999975 322111            0111122221         11467999999542          


Q ss_pred             --hhhHHhhh-hccccccccCcEEEEEEeCCCcCch-HHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649         96 --RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSL-WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus        96 --~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~-~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                        ...++... +...-+  ..++||+++|+++.-.- .+.+....+.++..+.++..                      .
T Consensus       184 ~~W~~fL~~L~k~R~r~--plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~----------------------~  239 (1169)
T TIGR03348       184 AAWLGFLGLLRKHRRRQ--PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELRE----------------------Q  239 (1169)
T ss_pred             HHHHHHHHHHHHhCCCC--CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHH----------------------H
Confidence              12222222 111111  37999999999875321 13445555666666555332                      2


Q ss_pred             cCCCCcEEEEeecccCCCC
Q psy11649        172 RTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~~d  190 (890)
                      -...+||.||.||+|+...
T Consensus       240 lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       240 LGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             hCCCCCEEEEEecchhhcC
Confidence            2346999999999998743

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG1143|consensus

Probab=96.90  E-value=0.003  Score=70.49  Aligned_cols=159  Identities=17%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC---CCC----------------------CCCccc-------eeEEEEEEecc-
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTP----------------------KPTLAL-------EYIYARKSGKT-   79 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~----------------------kptigv-------dY~f~~~~g~~-   79 (890)
                      .-+.+|+++|...+|||||+--|+.+.   ++-                      ..++|.       .|.-....... 
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            347899999999999999998877631   110                      112221       11110000000 


Q ss_pred             -ccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649         80 -VMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH  158 (890)
Q Consensus        80 -~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~  158 (890)
                       .....+.++|++|..+|..-.-.- -..|.   ++..++|+....--..  .-..-+..                    
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~g-LtgY~---Ph~A~LvVsA~~Gi~~--tTrEHLgl--------------------  298 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHG-LTGYT---PHFACLVVSADRGITW--TTREHLGL--------------------  298 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeee-cccCC---CceEEEEEEcCCCCcc--ccHHHHHH--------------------
Confidence             011267899999987763322111 11244   8889999887764432  11222211                    


Q ss_pred             ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHH-----------------------------HHHH
Q psy11649        159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-----------------------------LAHV  209 (890)
Q Consensus       159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-----------------------------la~~  209 (890)
                                  +.-+.+|+.++.+|+|+..      ++.....+++                             .|..
T Consensus       299 ------------~~AL~iPfFvlvtK~Dl~~------~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~  360 (591)
T KOG1143|consen  299 ------------IAALNIPFFVLVTKMDLVD------RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSG  360 (591)
T ss_pred             ------------HHHhCCCeEEEEEeecccc------chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccC
Confidence                        2335799999999999963      2111111221                             1112


Q ss_pred             cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        210 NGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       210 ~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +=.++|-+|+.+|++.+.++..++-+
T Consensus       361 nivPif~vSsVsGegl~ll~~fLn~L  386 (591)
T KOG1143|consen  361 NIVPIFAVSSVSGEGLRLLRTFLNCL  386 (591)
T ss_pred             CceeEEEEeecCccchhHHHHHHhhc
Confidence            23578889999999999998777654

>KOG0705|consensus

Probab=96.89  E-value=0.0024  Score=74.23  Aligned_cols=159  Identities=16%  Similarity=0.169  Sum_probs=100.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      -.+.|+-|||+.++|||+|+++++.+.- ....+.+-.|.  +..........+-|.|-+|... .    .|      ..
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k--kE~vv~gqs~lLlirdeg~~~~-a----Qf------t~   94 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK--KEVVVDGQSHLLLIRDEGGHPD-A----QF------CQ   94 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCcCccce--eeEEeeccceEeeeecccCCch-h----hh------hh
Confidence            3578999999999999999999987532 11223333332  2222222233677888877321 1    12      11


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ..|++|+||.+.+..+| +.+....-.+-.                            ..+...+|+++|+++.=...  
T Consensus        95 wvdavIfvf~~~d~~s~-q~v~~l~~~l~~----------------------------~r~r~~i~l~lvgtqd~iS~--  143 (749)
T KOG0705|consen   95 WVDAVVFVFSVEDEQSF-QAVQALAHEMSS----------------------------YRNISDLPLILVGTQDHISA--  143 (749)
T ss_pred             hccceEEEEEeccccCH-HHHHHHHhhccc----------------------------ccccccchHHhhcCcchhhc--
Confidence            37999999999999998 444443322211                            12234689999998753321  


Q ss_pred             CcchhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      + ..+.......++++.. ..+.+|++.+..|.|++..++.+...+
T Consensus       144 ~-~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~k~  188 (749)
T KOG0705|consen  144 K-RPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQKI  188 (749)
T ss_pred             c-cccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHHHH
Confidence            1 1233444455555554 468999999999999999887776654

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=96.87  E-value=0.002  Score=66.15  Aligned_cols=50  Identities=14%  Similarity=0.010  Sum_probs=34.1

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHH-------HHcCCceeEeccCChhhHHHH
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-------HVNGASLLFHSSLDPGLVKRT  559 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc-------l~yGAsL~ftS~K~~~n~~~l  559 (890)
                      ++|++||+||+|+...    ..+.+...++.++       .++|..++++|++.+.|++-+
T Consensus       117 ~~p~iiv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         117 GLKPIVVINKIDRPDA----RPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             CCCEEEEEECCCCCCC----CHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence            4789999999999632    2223333344444       345789999999999887433

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG1547|consensus

Probab=96.86  E-value=0.0075  Score=64.12  Aligned_cols=39  Identities=26%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             HHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649          8 DIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus         8 ~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      |.++++++.+..+..           .+++|+|||.+|.|||||+|.|..
T Consensus        30 dtI~~Qm~~k~mk~G-----------F~FNIMVVgqSglgkstlinTlf~   68 (336)
T KOG1547|consen   30 DTIIEQMRKKTMKTG-----------FDFNIMVVGQSGLGKSTLINTLFK   68 (336)
T ss_pred             HHHHHHHHHHHHhcc-----------CceEEEEEecCCCCchhhHHHHHH
Confidence            667777766665442           379999999999999999999876

>PRK13796 GTPase YqeH; Provisional

Probab=96.86  E-value=0.005  Score=70.26  Aligned_cols=59  Identities=24%  Similarity=0.323  Sum_probs=44.0

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +.|+++|+||+|+...  ...+..+...++.+++.+|+   .++++||+++.|++++.+.|...
T Consensus        96 ~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796         96 NNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4699999999999631  11223344456666777776   58999999999999999998765

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.85  E-value=0.0043  Score=67.99  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=40.1

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.|+++|.||+|+..      ........+.+ ...+..++++||+++.|++.|.+.|...+
T Consensus        48 ~kp~IiVlNK~DL~~------~~~~~~~~~~~-~~~~~~vi~iSa~~~~gi~~L~~~i~~~~  102 (276)
T TIGR03596        48 NKPRLIVLNKADLAD------PAVTKQWLKYF-EEKGIKALAINAKKGKGVKKIIKAAKKLL  102 (276)
T ss_pred             CCCEEEEEEccccCC------HHHHHHHHHHH-HHcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence            479999999999852      11122223333 23567889999999999999999988776

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=96.83  E-value=0.0016  Score=62.83  Aligned_cols=51  Identities=29%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccCChhhHHHHHHHHh
Q psy11649        508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILN  564 (890)
Q Consensus       508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K~~~n~~~l~kyi~  564 (890)
                      |+|+|+||+|+...  .+    ..+.++.++..+|. ..|.+|+|.+.|++.++++|.
T Consensus        90 p~ilv~NK~Dl~~~--~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        90 PVIGLVTKIDLAEA--DV----DIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             CeEEEEEeeccCCc--cc----CHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            78999999998631  11    12234566666776 689999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK00098 GTPase RsgA; Reviewed

Probab=96.78  E-value=0.0039  Score=69.19  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccccccc
Q psy11649        423 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLI  502 (890)
Q Consensus       423 ~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~  502 (890)
                      .+++|+|++.|....+-+++|+..++.                                                     
T Consensus        83 ~vllV~d~~~p~~~~~~idr~L~~~~~-----------------------------------------------------  109 (298)
T PRK00098         83 QAVLVFAAKEPDFSTDLLDRFLVLAEA-----------------------------------------------------  109 (298)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHH-----------------------------------------------------
Confidence            678999999997665666777665432                                                     


Q ss_pred             ccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649        503 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       503 ~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                        .++|+|||+||+|+..+  .+   .++. +..++...|..++++|++.+.+++.|+.+|..+
T Consensus       110 --~~ip~iIVlNK~DL~~~--~~---~~~~-~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk  165 (298)
T PRK00098        110 --NGIKPIIVLNKIDLLDD--LE---EARE-LLALYRAIGYDVLELSAKEGEGLDELKPLLAGK  165 (298)
T ss_pred             --CCCCEEEEEEhHHcCCC--HH---HHHH-HHHHHHHCCCeEEEEeCCCCccHHHHHhhccCc
Confidence              14788999999999621  12   2222 333456678899999999999999999987543

>cd01856 YlqF YlqF

Probab=96.76  E-value=0.0045  Score=62.63  Aligned_cols=55  Identities=24%  Similarity=0.283  Sum_probs=38.7

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.|+++|.||+|+..     .. ......+. ....+..++.+||+++.|++++++.+...+
T Consensus        46 ~k~~ilVlNK~Dl~~-----~~-~~~~~~~~-~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          46 NKPRIIVLNKADLAD-----PK-KTKKWLKY-FESKGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             CCCEEEEEehhhcCC-----hH-HHHHHHHH-HHhcCCeEEEEECCCcccHHHHHHHHHHHH
Confidence            469999999999852     11 11112222 223355689999999999999999998875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=96.76  E-value=0.011  Score=60.70  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=44.7

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC------ceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA------SLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA------sL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|||.||+|..   +.+..+.+.+....|...+|.      +.|++|++.+.|++.|.++|...+
T Consensus       122 ~~p~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  122 GIPIIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             T-SEEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             ccceEEeeeeccch---hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            58899999999999   333334444444477777764      499999999999999999988754

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01854 YjeQ_engC YjeQ/EngC

Probab=96.74  E-value=0.0054  Score=67.69  Aligned_cols=81  Identities=17%  Similarity=0.155  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCch-hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649        423 TLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL  501 (890)
Q Consensus       423 ~viivlDlS~Pw-~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l  501 (890)
                      .+++|+|...|+ +. ..+++|+..++.                                                    
T Consensus        81 ~vllV~d~~~p~~s~-~~ldr~L~~~~~----------------------------------------------------  107 (287)
T cd01854          81 QLVIVVSLNEPFFNP-RLLDRYLVAAEA----------------------------------------------------  107 (287)
T ss_pred             EEEEEEEcCCCCCCH-HHHHHHHHHHHH----------------------------------------------------
Confidence            688999999998 55 678888766542                                                    


Q ss_pred             cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649        502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                         .++|+|+|+||+|+..+  .+.     .....++.+.|..++++|++++.+++.|+.+|..+
T Consensus       108 ---~~ip~iIVlNK~DL~~~--~~~-----~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~k  162 (287)
T cd01854         108 ---AGIEPVIVLTKADLLDD--EEE-----ELELVEALALGYPVLAVSAKTGEGLDELREYLKGK  162 (287)
T ss_pred             ---cCCCEEEEEEHHHCCCh--HHH-----HHHHHHHHhCCCeEEEEECCCCccHHHHHhhhccc
Confidence               13788999999999743  111     11233445688999999999999999999988753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=96.72  E-value=0.0042  Score=70.72  Aligned_cols=58  Identities=17%  Similarity=0.245  Sum_probs=47.8

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc---eeEeccCChhhHHHHHHHHhhh
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs---L~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      .|+++|+||+|+..  .+...+.+.++++.+|..+|..   .+++|++.+.|++.|+++|...
T Consensus        91 ~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597        91 NPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             CCEEEEEEchhhCC--CCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            57899999999974  2223567788888889999974   8999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.71  E-value=0.0072  Score=68.80  Aligned_cols=83  Identities=20%  Similarity=0.156  Sum_probs=56.3

Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .+.|.+++|+++..+-+. .-+++++..+.                                ..++|.+||.||+|+..+
T Consensus       111 ANvD~vliV~s~~p~~~~-~~ldr~L~~a~--------------------------------~~~i~piIVLNK~DL~~~  157 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNL-RRIERYLALAW--------------------------------ESGAEPVIVLTKADLCED  157 (356)
T ss_pred             EeCCEEEEEEecCCCCCh-hHHHHHHHHHH--------------------------------HcCCCEEEEEEChhcCCC
Confidence            468999999999754443 34445544222                                236888999999999631


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                           .....+.+..+  ..|.+++++|++++.|++.|.++|.
T Consensus       158 -----~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        158 -----AEEKIAEVEAL--APGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             -----HHHHHHHHHHh--CCCCcEEEEECCCCccHHHHHHHhh
Confidence                 11111233333  4578899999999999999988863

>KOG0082|consensus

Probab=96.66  E-value=0.027  Score=63.69  Aligned_cols=127  Identities=15%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHH---hhhhhhhhhcccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIF---ESNESVREKRGSFEHFR  160 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~---~~ll~~~~~~~~l~~~~  160 (890)
                      .+.++|.+||.+-+.-+-.+    +  .++++||+|+++|........ ..-.+++.+.+   +.+..            
T Consensus       196 ~f~~~DvGGQRseRrKWihc----F--e~v~aviF~vslSeYdq~l~E-D~~~NRM~eS~~LF~sI~n------------  256 (354)
T KOG0082|consen  196 KFRMFDVGGQRSERKKWIHC----F--EDVTAVIFCVSLSEYDQVLEE-DETTNRMHESLKLFESICN------------  256 (354)
T ss_pred             ceEEEeCCCcHHHhhhHHHh----h--cCCCEEEEEEehhhhhhhccc-ccchhHHHHHHHHHHHHhc------------
Confidence            78999999997655555545    2  369999999999986543100 00111111111   11000            


Q ss_pred             ccccccccccccCCCCcEEEEeecccCCCC-------------CCcc-----hhhhhHHHHHHHHHHc--CCeEEEEecc
Q psy11649        161 TADEHRDKGLIRTFPVPLILIGGKYDLFEN-------------LEPN-----KKRIAVQCLRYLAHVN--GASLLFHSSL  220 (890)
Q Consensus       161 ~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-------------~d~e-----~r~~i~~~lr~la~~~--Ga~l~etSAK  220 (890)
                          +     ---...++|+..||.|++++             +...     ....+....+++....  .+-..+|.|.
T Consensus       257 ----~-----~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~At  327 (354)
T KOG0082|consen  257 ----N-----KWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCAT  327 (354)
T ss_pred             ----C-----cccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeec
Confidence                0     00124799999999999853             1111     1122222222222222  2335667888


Q ss_pred             CCCCHHHHHHHHHHHHhc
Q psy11649        221 DPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       221 ~~~nId~Lk~~I~~~lf~  238 (890)
                      +-.||+.++.++...+..
T Consensus       328 DT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  328 DTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            888999888887777654

>KOG0088|consensus

Probab=96.63  E-value=0.0091  Score=59.67  Aligned_cols=112  Identities=16%  Similarity=0.295  Sum_probs=84.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +|||+-.|+..+..|=.+  --. .   .--+++|.|+|...++ .-++.|...+|.-...                   
T Consensus        64 L~IWDTAGQErfHALGPI--YYR-g---SnGalLVyDITDrdSF-qKVKnWV~Elr~mlGn-------------------  117 (218)
T KOG0088|consen   64 LHIWDTAGQERFHALGPI--YYR-G---SNGALLVYDITDRDSF-QKVKNWVLELRTMLGN-------------------  117 (218)
T ss_pred             eeeeeccchHhhhccCce--EEe-C---CCceEEEEeccchHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            489999999777655444  111 1   1247899999999988 8888898887763332                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       -|-++|||+|.|+-     |++..--|-.-.||..-||--+=||+|+
T Consensus       118 ---------------------------------ei~l~IVGNKiDLE-----eeR~Vt~qeAe~YAesvGA~y~eTSAk~  159 (218)
T KOG0088|consen  118 ---------------------------------EIELLIVGNKIDLE-----EERQVTRQEAEAYAESVGALYMETSAKD  159 (218)
T ss_pred             ---------------------------------eeEEEEecCcccHH-----HhhhhhHHHHHHHHHhhchhheeccccc
Confidence                                             16679999999984     4444555667788999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.-+.-|+.-+..+..
T Consensus       160 N~Gi~elFe~Lt~~Mi  175 (218)
T KOG0088|consen  160 NVGISELFESLTAKMI  175 (218)
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            9988887766665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	890
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 1e-12
 Identities = 91/635 (14%), Positives = 167/635 (26%), Gaps = 195/635 (30%)

Query: 22  SSSEVHKIDIQSQ--ERTLLLIGTKSVGKSTLVFRFLE--------------KNDTPKPT 65
           S  E+  I +       TL L  T    +  +V +F+E              K +  +P+
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 66  LALE-YIYARKS---------------GKTVMKDICHLWEL------------GSGTSRL 97
           +    YI  R                  +  +K    L EL            GSG + +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 98  EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE 157
               +  S+ +  +  F  +  L+L   NS  T  E  L K     + N + R    S  
Sbjct: 167 -ALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNI 223

Query: 158 HFRTAD-EHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLF 216
             R    +   + L+++ P                          CL  L +V  A    
Sbjct: 224 KLRIHSIQAELRRLLKSKPYE-----------------------NCLLVLLNVQNAKAW- 259

Query: 217 HSSLDPG---LVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKD 273
            ++ +     L+  TR                                V           
Sbjct: 260 -NAFNLSCKILLT-TRFK-----------------------------QVTDFLSAATTTH 288

Query: 274 ASLESGGRGFNRSRGMK-FEKKRGWIEGTVT-----------------ARNLEPNKKRIA 315
            SL+                K   +++                     A ++        
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344

Query: 316 VQCLRYLAHVNGASL-----LFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIF 370
                   HVN   L        + L+P   ++       +        +V F  +  I 
Sbjct: 345 ----DNWKHVNCDKLTTIIESSLNVLEPAEYRK------MF-----DRLSV-FPPSAHI- 387

Query: 371 VPFGTDSVASIEGTTQYVTADICHLWELGSGTSRLEVASLFSSFSLTAQSG--FTLVLM- 427
            P                   +  +W     +  + V +    +SL  +     T+ +  
Sbjct: 388 -PTIL----------------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 428 LDLSRLNSLWTEAE---TFLAKFRAI--FESNE-SVREKRGSF-----EHFRTADEHRDK 476
           + L     L  E     + +  +     F+S++         F      H +  +     
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490

Query: 477 GLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY 536
            L R   +    +  K         IR         G   +  + L+  K  I     +Y
Sbjct: 491 TLFRMVFLDFRFLEQK---------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 537 LAHVNGASLL-FHSSLDPGLVK-RTRDILNHYAFS 569
              VN  ++L F   ++  L+  +  D+L   A  
Sbjct: 542 ERLVN--AILDFLPKIEENLICSKYTDLL-RIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 87/629 (13%), Positives = 179/629 (28%), Gaps = 171/629 (27%)

Query: 209 VNGASLLFHSSLDPG--LVKR-TRDILN-HYAFSSHLASAVNFDYNKPIFVPFGTDSVAS 264
           V+G   LF + L     +V++   ++L  +Y F   L S +  +  +P        +   
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQP-----SMMTRMY 112

Query: 265 IEGTTHGKDASLESGGRGF---NRSRGMKFEKKRGWIEGTVTARNLEPNKKRIAV----- 316
           IE     +   L +  + F   N SR   + K R  +        L P K  + +     
Sbjct: 113 IE--QRDR---LYNDNQVFAKYNVSRLQPYLKLRQAL------LELRPAKN-VLIDGVLG 160

Query: 317 ---QCLRYLAHVNGASLLFHSS-----LDPGLVKRTRDILN-----HYAFSSHLASAVNF 363
                +          +          L+         +L       Y    +  S  + 
Sbjct: 161 SGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 364 DYNKPIFVPFGTDSVASIEGTTQYVTA-----DICHLWELGSGTSRLEVASLFSSFSLTA 418
             N  + +      +  +  +  Y        ++ +                +++F+L+ 
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-------------AWNAFNLSC 266

Query: 419 QSGFTLVLMLDLSRLNSL--WTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK 476
           +    L+        + L   T     L         +E                + R +
Sbjct: 267 K---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-------SLLLKYLDCRPQ 316

Query: 477 GL----IRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQ 532
            L    + T P  L +I            IR            +D ++++  +K    ++
Sbjct: 317 DLPREVLTTNPRRLSIIAE---------SIRDGL-------ATWDNWKHVNCDKLTTIIE 360

Query: 533 CLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDS 592
                     +SL   + L+P   ++       +        +V F  +  I  P    S
Sbjct: 361 ----------SSL---NVLEPAEYRK------MF-----DRLSV-FPPSAHI--PTILLS 393

Query: 593 V---ASIEGTTQYVTADTEVGRKHLTTKYSSNSALGLM---------NDNPLWIVIPKLG 640
           +     I+     V    ++ +  L  K    S + +           +N       +  
Sbjct: 394 LIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-------EYA 444

Query: 641 LHNTHHICYDHPCNKHVENQGWIIKILKWVVSSRGSF-----EHFRTADEHRDKGLIRTF 695
           LH +    Y+ P     ++      I  ++      F      H +  +      L R  
Sbjct: 445 LHRSIVDHYNIPKTFDSDD-----LIPPYL---DQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 696 PVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG 755
            +    +  K         IR         G   +  + L+  K  I     +Y   VN 
Sbjct: 497 FLDFRFLEQK---------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN- 546

Query: 756 ASLL-FHSSLDPGLVK-RTRDILNHYAFS 782
            ++L F   ++  L+  +  D+L   A  
Sbjct: 547 -AILDFLPKIEENLICSKYTDLL-RIALM 573

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	890
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.88
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.88
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.88
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.87
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.87
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.87
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.87
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.87
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.87
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.87
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.87
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.87
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.87
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.87
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.87
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.87
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.87
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.87
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.87
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.87
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.87
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.87
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.87
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.87
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.87
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.87
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.87
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.87
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.86
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.86
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.86
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.86
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.86
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.86
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.86
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.86
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.86
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.86
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.86
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.86
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.86
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.86
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.86
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.85
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.85
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.85
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.85
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.85
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.85
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.85
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.85
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.85
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.85
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.85
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.85
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.85
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.85
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.85
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.85
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.85
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.85
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.85
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.84
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.84
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.84
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.84
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.84
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.84
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.84
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.84
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.83
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.83
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.83
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.83
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.82
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.82
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.82
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.82
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.81
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.81
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.81
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.81
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.81
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.81
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.81
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.8
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.8
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.8
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.8
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.79
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.79
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.79
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.79
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.78
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.77
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.77
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.76
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.63
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.76
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.76
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.75
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.75
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.75
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.75
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.74
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.73
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.73
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.73
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.73
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.73
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.73
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.72
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.71
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.7
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.69
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.69
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.68
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.67
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.64
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.6
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.59
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.57
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.55
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.54
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.53
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.52
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.52
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.51
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.51
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.5
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.5
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.5
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.49
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.48
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.47
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.47
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.46
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.45
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.45
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.45
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.44
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.43
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.42
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.42
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.42
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.41
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.41
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.41
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.39
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.39
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.38
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.38
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.38
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.37
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.36
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.33
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.33
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.33
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.32
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.29
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.29
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.28
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.26
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.25
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.23
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.23
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.23
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.21
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.18
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.18
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.18
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.17
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.15
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.15
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.15
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.14
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.14
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.13
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.09
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.09
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.07
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.07
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.05
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.02
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.0
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.97
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.95
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.95
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.93
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.89
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.85
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.83
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.78
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.77
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.75
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.75
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.74
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.73
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.72
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.71
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.71
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.71
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.71
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.7
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.7
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.7
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.69
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.69
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	98.68
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	98.66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.66
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.65
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.65
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.64
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.64
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.63
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.63
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.63
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	98.63
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.63
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.63
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.62
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.62
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.62
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.61
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.6
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.6
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	98.6
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.6
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	98.59
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.59
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.59
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.58
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.58
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.57
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.57
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.56
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.56
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.55
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.54
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.54
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	98.54
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.54
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.54
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.54
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.53
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.53
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.52
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.52
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.52
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.52
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.52
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.52
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.51
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.49
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.49
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.48
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.48
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.48
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.47
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.47
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.47
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.47
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.47
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.47
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.47
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.47
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.44
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.42
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.42
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.41
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.4
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.38
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.37
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.37
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.37
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.36
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.35
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.33
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.33
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.33
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.31
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.31
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.26
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.24
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.24
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.24
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.23
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.2
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.2
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.5
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.19
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.16
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.1
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.08
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.05
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.03
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.99
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.99
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.97
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.93
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.91
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.9
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.85
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.84
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.8
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	97.8
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.78
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.77
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.75
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.74
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.73
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.71
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	97.69
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	97.66
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	97.63
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.62
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	97.61
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.6
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.58
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.53
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.51
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.49
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.47
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.43
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.42
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.33
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.25
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.24
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.22
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.2
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.2
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	97.2
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.13
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.07
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.02
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.98
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.98
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.98
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	96.95
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.93
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.88
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.78
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.62
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.61
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.58
1wb1_A	482	Translation elongation factor SELB; selenocysteine	96.56
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	96.41
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.27
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	96.26
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	96.26
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.23
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	96.18
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	96.14
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.13
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.13
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	96.13
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.08
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	96.08
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.07
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.96
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	95.93
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	95.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.87
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	95.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	95.62
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	95.59
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	95.56
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.49
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	95.31
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.25
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.17
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	94.91
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	94.86
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.67
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	94.61
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	94.54
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.42
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	93.85
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.68
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	93.61
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	93.41
2xxa_A	433	Signal recognition particle protein; protein trans	93.23
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	93.22
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	93.02
2hf9_A	226	Probable hydrogenase nickel incorporation protein	92.85
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	92.77
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.74
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	92.66
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	92.62
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	92.53
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	92.47
1wxq_A	397	GTP-binding protein; structural genomics, riken st	92.33
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	92.33
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	92.3
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	92.3
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.24
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	92.23
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	92.01
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	91.89
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	91.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	91.84
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	91.53
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	91.49
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	91.45
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	91.42
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	91.3
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	91.12
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	91.01
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	90.89
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	90.87
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	90.74
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	90.7
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	90.6
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	90.42
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	90.39
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	90.31
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	90.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	90.26
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	90.21
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	90.16
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	90.06
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	90.01
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	89.99
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	89.99
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	89.96
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	89.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	89.88
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	89.87
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	89.65
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	89.65
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	89.62
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	89.5
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	89.49
4a74_A	231	DNA repair and recombination protein RADA; hydrola	89.44
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	89.39
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	89.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	89.36
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	89.31
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	89.29
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	89.28
1sgw_A	214	Putative ABC transporter; structural genomics, P p	89.26
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	89.25
1b0u_A	262	Histidine permease; ABC transporter, transport pro	89.22
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	89.07
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	89.06
1g6h_A	257	High-affinity branched-chain amino acid transport	89.02
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	89.02
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	88.96
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	88.93
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	88.92
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	88.91
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	88.89
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	88.84
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	88.83
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	88.83
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	88.78
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	88.75
1ji0_A	240	ABC transporter; ATP binding protein, structural g	88.71
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	88.7
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	88.68
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	88.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	88.5
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	88.5
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	88.46
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	88.41
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	88.38
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	88.37
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	88.32
2eyu_A	261	Twitching motility protein PILT; pilus retraction	88.29
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	88.28
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	88.22
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	88.19
2ghi_A	260	Transport protein; multidrug resistance protein, M	88.19
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	88.17
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	88.17
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	88.08
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	87.97
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	87.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	87.91
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	87.91

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.94  E-value=2.3e-26  Score=239.33  Aligned_cols=166  Identities=18%  Similarity=0.251  Sum_probs=129.4

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      ...+++||+|||++|||||||++||+++.  ..+.||++.+|...... ......+++||||+|+++|..+...|    +
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~-~~~~~v~l~iwDtaGqe~~~~l~~~~----~   83 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRTIRLQLWDTAGLERFRSLIPSY----I   83 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEE-CSSCEEEEEEECCSCTTTCGGGHHHH----H
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEE-ecceEEEEEEEECCCchhhhhHHHHH----h
Confidence            34578999999999999999999999864  57789999887543332 22233489999999999999999988    3


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  +++++|+|||++++++| +++..|+..+.+....                             ++|++|||||+|+.
T Consensus        84 ~--~a~~~ilv~di~~~~Sf-~~i~~~~~~i~~~~~~-----------------------------~~piilVgNK~Dl~  131 (216)
T 4dkx_A           84 R--DSAAAVVVYDITNVNSF-QQTTKWIDDVRTERGS-----------------------------DVIIMLVGNKTDLA  131 (216)
T ss_dssp             T--TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-----------------------------SSEEEEEEECTTCG
T ss_pred             c--cccEEEEEeecchhHHH-HHHHHHHHHHHHhcCC-----------------------------CCeEEEEeeccchH
Confidence            3  59999999999999999 9999999988765432                             68999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           ++|.+..++++++|.++|+.|++|||++|.||+++++.|...+..
T Consensus       132 -----~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          132 -----DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             -----GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred             -----hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence                 478888999999999999999999999999999999999887743

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.89  E-value=2e-22  Score=197.98  Aligned_cols=168  Identities=18%  Similarity=0.272  Sum_probs=133.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.+|++.++..............+++||+||++.+..+...+    ++ 
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~----~~-   78 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKY----IY-   78 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHH----HT-
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHH----Hh-
Confidence            457999999999999999999999864  34568888876543333222123489999999999988887777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc-EEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~  189 (890)
                       ++|++|+|||++++.++ +.+..|+..+.+.....                           .+.| +++|+||+|+..
T Consensus        79 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~---------------------------~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           79 -GAQGVLLVYDITNYQSF-ENLEDWYTVVKKVSEES---------------------------ETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHHHH---------------------------TCCCEEEEEEECGGGGG
T ss_pred             -hCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhccc---------------------------CCCCeEEEEEEcccccc
Confidence             59999999999999997 88889998887654320                           1345 899999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                           .+.+..++++.++..+++++++|||+++.|++++++.|...++..
T Consensus       130 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  174 (178)
T 2hxs_A          130 -----MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI  174 (178)
T ss_dssp             -----GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred             -----ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence                 455566788899999999999999999999999999999888553

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.88  E-value=1.4e-21  Score=190.20  Aligned_cols=163  Identities=17%  Similarity=0.286  Sum_probs=125.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++.+..+...+    ++ 
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~----~~-   77 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIY----YR-   77 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCS----ST-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhhHHHH----hc-
Confidence            357899999999999999999999864  356688887765333322 2223389999999998887777666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|+|++++.++ +.+..|+..+.+....                             ++|+++|+||+|+.. 
T Consensus        78 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-----------------------------~~piilv~nK~Dl~~-  125 (170)
T 1z08_A           78 -DSNGAILVYDITDEDSF-QKVKNWVKELRKMLGN-----------------------------EICLCIVGNKIDLEK-  125 (170)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHGG-----------------------------GSEEEEEEECGGGGG-
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-----------------------------CCeEEEEEECccccc-
Confidence             59999999999999998 8888998877665432                             589999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                          .+.+..+++++++..+|+.++++||+++.|++++++.|...+.
T Consensus       126 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          126 ----ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             ----GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence                4455567888999999999999999999999999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.88  E-value=7.8e-22  Score=197.98  Aligned_cols=166  Identities=17%  Similarity=0.196  Sum_probs=126.5

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS  107 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~  107 (890)
                      ......+||+|+|++|||||||+++|+++.  ..+.+|++.+|..  ..........++|||++|++++..+. .+    
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~-~~----   88 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSS--EETVDHQPVHLRVMDTADLDTPRNCE-RY----   88 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEE--EEEETTEEEEEEEEECCC---CCCTH-HH----
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeE--EEEECCEEEEEEEEECCCCCcchhHH-HH----
Confidence            345667999999999999999999999864  4667888876532  22112223489999999998877653 34    


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      ++  +++++|+|||++++.++ +.+..|+..+.+....                          ...++|++||+||+|+
T Consensus        89 ~~--~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl  139 (187)
T 3c5c_A           89 LN--WAHAFLVVYSVDSRQSF-DSSSSYLELLALHAKE--------------------------TQRSIPALLLGNKLDM  139 (187)
T ss_dssp             HT--TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHHH--------------------------HCCCCCEEEEEECGGG
T ss_pred             Hh--hCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhhc--------------------------cCCCCCEEEEEECcch
Confidence            12  49999999999999998 8888999888765432                          0126899999999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEec-cCCCCHHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSS-LDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSA-K~~~nId~Lk~~I~~~l  236 (890)
                      .     +.+.+..+++++++..+|+.+++||| +++.|++++++.|...+
T Consensus       140 ~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          140 A-----QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             G-----GGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred             h-----hcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence            5     24566778899999999999999999 89999999999998775

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=1e-21  Score=190.45  Aligned_cols=164  Identities=17%  Similarity=0.288  Sum_probs=129.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++++..+...+    ++  
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~----~~--   74 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPXY----YR--   74 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHH----HT--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhhhhhh----hc--
Confidence            36899999999999999999999864  356688887764333322 1123389999999999888887776    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|+|++++.++ +.+..|+..+.+...                             .++|+++|+||+|+..+.
T Consensus        75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~piilv~nK~Dl~~~~  124 (170)
T 1ek0_A           75 NAQAALVVYDVTKPQSF-IKARHWVKELHEQAS-----------------------------KDIIIALVGNKIDXLQEG  124 (170)
T ss_dssp             TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-----------------------------TTCEEEEEEECGGGGGSS
T ss_pred             cCcEEEEEEecCChHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCCccccc
Confidence            49999999999999998 788888877665321                             268999999999996321


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        +.+.+..+..++++..+++.+++|||+++.|++++++.|.+.+
T Consensus       125 --~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          125 --GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             --CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             --cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence              1255667788899999999999999999999999999887654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.87  E-value=1.4e-21  Score=189.60  Aligned_cols=162  Identities=17%  Similarity=0.254  Sum_probs=128.4

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++++..+...+    ++ 
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~----~~-   77 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMY----YR-   77 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHH----HT-
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhhhHHh----cc-
Confidence            457899999999999999999999863  345678887754333222 1123489999999999988887777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|+|++++.++ +.+..|+..+.+..                             ..++|+++|+||+|+.. 
T Consensus        78 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilv~nK~Dl~~-  125 (170)
T 1r2q_A           78 -GAQAAIVVYDITNEESF-ARAKNWVKELQRQA-----------------------------SPNIVIALSGNKADLAN-  125 (170)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG-
T ss_pred             -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccCcc-
Confidence             49999999999999998 78888887665532                             12689999999999852 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          .+....++++.++..+++++++|||++|.|++++++.|...+
T Consensus       126 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          126 ----KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             ----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             ----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence                344556778889999999999999999999999999988765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.87  E-value=1.4e-21  Score=192.52  Aligned_cols=164  Identities=18%  Similarity=0.285  Sum_probs=130.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|++..  ..+.++++.++....... ......+++||+||++++..+...+    ++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~   83 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSLAPMY----YR   83 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGGTHHH----HT
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhhhHHH----hc
Confidence            4567899999999999999999999863  345678887765433322 1123489999999999888877776    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|+|++++.++ +.+..|+..+.+...                             .++|+++|+||+|+..
T Consensus        84 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~p~i~v~nK~Dl~~  131 (181)
T 2efe_B           84 --GAAAAIIVFDVTNQASF-ERAKKWVQELQAQGN-----------------------------PNMVMALAGNKSDLLD  131 (181)
T ss_dssp             --TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCTT
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCcccc
Confidence              49999999999999998 788888887765321                             2689999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           .+....++++.++..++++++++||+++.|++++++.|...+.
T Consensus       132 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          132 -----ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP  174 (181)
T ss_dssp             -----TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred             -----cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence                 3455567888999999999999999999999999999988763

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.4e-21  Score=199.70  Aligned_cols=164  Identities=20%  Similarity=0.229  Sum_probs=132.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.+|++.+|........ .....+++||+||++++..+...+    ++ 
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~----~~-   97 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-GEKVKLQIWDTAGQERFRSITQSY----YR-   97 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHGGG----ST-
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHH----Hh-
Confidence            456899999999999999999999863  3567888888654333221 122489999999999988887777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+.....                             .++|+++|+||+|+.. 
T Consensus        98 -~~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~NK~Dl~~-  145 (201)
T 2ew1_A           98 -SANALILTYDITCEESF-RCLPEWLREIEQYAS-----------------------------NKVITVLVGNKIDLAE-  145 (201)
T ss_dssp             -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECGGGGG-
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECCCCcc-
Confidence             59999999999999998 788899887765321                             2689999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.+..++++.++...++.+++|||++|.|++++++.|...+..
T Consensus       146 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          146 ----RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             ----GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                45556677888999999999999999999999999999888753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.87  E-value=1.8e-21  Score=189.11  Aligned_cols=162  Identities=14%  Similarity=0.234  Sum_probs=129.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||.+++..+...+    ++ 
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~----~~-   77 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRALAPMY----YR-   77 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGTHHH----HT-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcccHhh----Cc-
Confidence            457899999999999999999999864  456788887754333222 1223489999999998888777766    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|+|++++.++ +.+..|++.+....                             ...+|+++|+||+|+.. 
T Consensus        78 -~~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~-----------------------------~~~~~iilv~nK~Dl~~-  125 (170)
T 1z0j_A           78 -GSAAAIIVYDITKEETF-STLKNWVRELRQHG-----------------------------PPSIVVAIAGNKCDLTD-  125 (170)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTSEEEEEEECTTCGG-
T ss_pred             -CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCcEEEEEECCcccc-
Confidence             49999999999999998 78888888776532                             12589999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          .++...+.++.++..++++++++||+++.|++++++.|...+
T Consensus       126 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          126 ----VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             ----GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ----ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence                345566778899999999999999999999999999998775

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=199.60  Aligned_cols=165  Identities=18%  Similarity=0.217  Sum_probs=126.6

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.+|++.+|........ .....++|||+||++++..+...+    ++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~~  100 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSY----YR  100 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGGGHHHHHHH----HT
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHH----Hh
Confidence            4456899999999999999999999864  3567888887654333321 122489999999999998888777    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++.++ +.+..|+..+.+..                             ..++|++||+||+|+..
T Consensus       101 --~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~NK~Dl~~  148 (201)
T 2hup_A          101 --SANGAILAYDITKRSSF-LSVPHWIEDVRKYA-----------------------------GSNIVQLLIGNKSDLSE  148 (201)
T ss_dssp             --TCSEEEEEEETTBHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG
T ss_pred             --hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECCcccc
Confidence              59999999999999998 78888988776532                             12689999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           .+.+..+++++++..+++ .+++|||+++.|++++++.|...+..
T Consensus       149 -----~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          149 -----LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             -----GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -----ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                 455667788999999999 99999999999999999999888753

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.87  E-value=1.8e-21  Score=190.75  Aligned_cols=164  Identities=20%  Similarity=0.231  Sum_probs=130.7

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....++|+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++++..+...+    ++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~   86 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSY----YR   86 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHH----HH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhhHHHH----hc
Confidence            3457999999999999999999999864  355678887754322222 1123489999999999988887777    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|+|++++.++ +.+..|+..+....                             ..++|+++|+||+|+..
T Consensus        87 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~piilv~nK~Dl~~  134 (179)
T 1z0f_A           87 --GAAGALMVYDITRRSTY-NHLSSWLTDARNLT-----------------------------NPNTVIILIGNKADLEA  134 (179)
T ss_dssp             --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG
T ss_pred             --cCCEEEEEEeCcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccccc
Confidence              49999999999999988 78888888766532                             12689999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           .+....+++++++..+++.+++|||+++.|++++++.|.+.+.
T Consensus       135 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          135 -----QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             -----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             -----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence                 4555667888999999999999999999999999999988763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.5e-21  Score=192.19  Aligned_cols=164  Identities=18%  Similarity=0.237  Sum_probs=124.8

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      ....++|+|+|++|||||||+++|+++.   ..+.+|++.+|....... ......+++||+||++++..+...+    +
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~----~   81 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAY----Y   81 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CC----G
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHH----c
Confidence            3567899999999999999999999864   356788888865433222 1222379999999999887777666    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|+|++++.++ +.+..|+..+.+...                             .++|+++|+||+|+.
T Consensus        82 ~--~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~  129 (180)
T 2g6b_A           82 R--DAHALLLLYDVTNKASF-DNIQAWLTEIHEYAQ-----------------------------HDVALMLLGNKVDSA  129 (180)
T ss_dssp             G--GCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECCSTT
T ss_pred             c--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCcEEEEEECcccC
Confidence            2  59999999999999987 788888887765321                             268999999999996


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .     .+.+..++++.++..+++++++|||+++.|++++++.|.+.+.
T Consensus       130 ~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (180)
T 2g6b_A          130 H-----ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  173 (180)
T ss_dssp             S-----CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             c-----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3     3445566788899999999999999999999999999988874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.87  E-value=2.2e-21  Score=192.13  Aligned_cols=164  Identities=18%  Similarity=0.256  Sum_probs=131.6

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.++++..|.  ...........+++||+||++.+..+...+    ++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~   88 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYL--KHTEIDNQWAILDVLDTAGQEEFSAMREQY----MR   88 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCSCGGGCSSHHHH----HH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeE--EEEEeCCcEEEEEEEECCCchhhHHHHHHH----Hh
Confidence            4568999999999999999999999863  466678876652  222222223378899999999888887777    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++.++ +.+..|+..+.+...                            ..++|+++|+||+|+..
T Consensus        89 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ilv~nK~Dl~~  137 (183)
T 3kkq_A           89 --TGDGFLIVYSVTDKASF-EHVDRFHQLILRVKD----------------------------RESFPMILVANKVDLMH  137 (183)
T ss_dssp             --HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT----------------------------SSCCCEEEEEECTTCST
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECCCchh
Confidence              49999999999999998 888889887765432                            23689999999999852


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEecc-CCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSL-DPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK-~~~nId~Lk~~I~~~lf  237 (890)
                           .+.+..+++++++..+++++++|||+ ++.|++++++.|.+.+.
T Consensus       138 -----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          138 -----LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             -----TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             -----ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence                 55667788999999999999999999 99999999999988763

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.87  E-value=2.8e-21  Score=187.18  Aligned_cols=161  Identities=19%  Similarity=0.276  Sum_probs=127.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      +.+||+|+|++|||||||+++|+++.  ..+.+|++..+.  ...........+++||+||++.+..+...+    ++  
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~--   73 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--KQVEVDCQQCMLEILDTAGTEQFTAMRDLY----MK--   73 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE--EEEESSSCEEEEEEEEECSSCSSTTHHHHH----HH--
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE--EEEEECCEEEEEEEEECCChHHHHHHHHHH----hc--
Confidence            46899999999999999999999863  456677775543  222222223489999999999988888777    11  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|||++++.++ +.+..|++.+.+...                            ..++|+++|+||+|+..  
T Consensus        74 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~--  122 (167)
T 1c1y_A           74 NGQGFALVYSITAQSTF-NDLQDLREQILRVKD----------------------------TEDVPMILVGNKCDLED--  122 (167)
T ss_dssp             HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHC----------------------------CSCCCEEEEEECTTCGG--
T ss_pred             cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC----------------------------cCCCcEEEEEECccccc--
Confidence            49999999999999998 778888877665431                            23689999999999952  


Q ss_pred             CcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .+....++++.++..+ ++++++|||++|.|++++++.|...+
T Consensus       123 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          123 ---ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             ---GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ---cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence               4455567788889888 78999999999999999999998765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.87  E-value=2.4e-21  Score=195.60  Aligned_cols=164  Identities=18%  Similarity=0.277  Sum_probs=131.5

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|++..  ..+.++++.++....... ......+++||+||++++..+...+    ++ 
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-   79 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGLERYRTITTAY----YR-   79 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTT----GG-
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEE-CCeEEEEEEEECCCchhhcchHHHh----hc-
Confidence            356899999999999999999999865  456688887765333322 1223489999999999988887777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+....                             ..++|+++|+||+|+.. 
T Consensus        80 -~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~~-  127 (203)
T 1zbd_A           80 -GAMGFILMYDITNEESF-NAVQDWSTQIKTYS-----------------------------WDNAQVLLVGNKCDMED-  127 (203)
T ss_dssp             -GCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CSSCEEEEEEECTTCTT-
T ss_pred             -CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECcccCc-
Confidence             59999999999999998 78888888765532                             12589999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.+..+.+++++..+|+++++|||+++.|++++++.|...+..
T Consensus       128 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          128 ----ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             ----SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                34555678889999999999999999999999999999887753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.87  E-value=3.5e-22  Score=197.83  Aligned_cols=163  Identities=18%  Similarity=0.244  Sum_probs=105.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+|+|++|||||||+++|+++.  ..+.+|++.+|....... ......+++||+||++++..+...+    ++  
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~--   79 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAY----YR--   79 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------CCTT----TT--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhhHHHH----Hh--
Confidence            46899999999999999999999864  356688887765433322 1122489999999998887776666    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++.++ +.+..|+..+.+...                             .++|++||+||+|+..  
T Consensus        80 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~~--  127 (183)
T 2fu5_C           80 GAMGIMLVYDITNEKSF-DNIRNWIRNIEEHAS-----------------------------ADVEKMILGNKCDVND--  127 (183)
T ss_dssp             TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-----------------------------TTCEEEEEEEC--CCS--
T ss_pred             cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECccCCc--
Confidence            59999999999999998 788889887765321                             2689999999999952  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         .+.+..+++++++..+++++++|||+++.|++++++.|...+..
T Consensus       128 ---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          128 ---KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA  171 (183)
T ss_dssp             ---CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             ---cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence               34555677889999999999999999999999999999888753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.87  E-value=1.7e-21  Score=191.43  Aligned_cols=169  Identities=17%  Similarity=0.284  Sum_probs=120.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|++..  ..+.++++.++..............+.+||+||++.+..+...+    ++ 
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-   80 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF----YR-   80 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC----ST-
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHH----hh-
Confidence            347899999999999999999999864  45678888776543333221223489999999998888777666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+......                         ....++|+++|+||+|+.. 
T Consensus        81 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~Dl~~-  132 (182)
T 1ky3_A           81 -GADCCVLVYDVTNASSF-ENIKSWRDEFLVHANV-------------------------NSPETFPFVILGNKIDAEE-  132 (182)
T ss_dssp             -TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------------SCTTTCCEEEEEECTTSCG-
T ss_pred             -cCCEEEEEEECCChHHH-HHHHHHHHHHHHHhcc-------------------------cCcCCCcEEEEEECCcccc-
Confidence             59999999999999998 8888898877665421                         1224689999999999852 


Q ss_pred             CCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                         +.+.+..++++.++. ..++++++|||++|.|++++++.|...+.
T Consensus       133 ---~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          133 ---SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL  177 (182)
T ss_dssp             ---GGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---ccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence               234455677888888 56789999999999999999999988764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.87  E-value=2.9e-21  Score=191.48  Aligned_cols=166  Identities=15%  Similarity=0.263  Sum_probs=131.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecccc---------ceEEEEEEcCCCcchhhHHh
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVM---------KDICHLWELGSGTSRLEVAS  101 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~---------k~~l~IwDlpG~~~~~~Li~  101 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.+|++.+|...........         ...+++||+||++++..+..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            457899999999999999999999853  4567888887641122211111         34899999999999888877


Q ss_pred             hhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649        102 LFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI  181 (890)
Q Consensus       102 ~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV  181 (890)
                      .+    ++  ++|++|+|+|++++.++ +.+..|+..+.....                            ..++|+++|
T Consensus        89 ~~----~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv  133 (195)
T 3bc1_A           89 AF----FR--DAMGFLLLFDLTNEQSF-LNVRNWISQLQMHAY----------------------------SENPDIVLC  133 (195)
T ss_dssp             HT----TT--TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSS----------------------------SSSCCEEEE
T ss_pred             HH----Hc--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEE
Confidence            77    22  59999999999999998 778888887665321                            136899999


Q ss_pred             eecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        182 GGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +||+|+..     .+....+.+++++..+|+++++|||+++.|++++++.|...+..
T Consensus       134 ~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          134 GNKSDLED-----QRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             EECTTCGG-----GCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EECccccc-----ccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            99999952     44556678889999999999999999999999999999888753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=191.36  Aligned_cols=163  Identities=18%  Similarity=0.268  Sum_probs=130.4

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.++++.++........ .....+.+||+||++.+..+...+    ++ 
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   80 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GEKVKLQIWDTAGQERFRTITSTY----YR-   80 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-TEEEEEEEEEETTGGGCSSCCGGG----GT-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-CEEEEEEEEcCCCchhhhhhHHHH----hc-
Confidence            457899999999999999999999863  4667888877654333321 122479999999998887776666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|+|++++.++ +.+..|+..+.+...                              ++|+++|+||+|+.  
T Consensus        81 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~--  126 (181)
T 3tw8_B           81 -GTHGVIVVYDVTSAESF-VNVKRWLHEINQNCD------------------------------DVCRILVGNKNDDP--  126 (181)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHCT------------------------------TSEEEEEEECTTCG--
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC------------------------------CCCEEEEEECCCCc--
Confidence             59999999999999998 788888887765321                              48999999999985  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         +.+.......+.++..+++++++|||++|.|++++++.|...+..
T Consensus       127 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          127 ---ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             ---GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ---hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence               245556678889999999999999999999999999999888754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.87  E-value=2.6e-21  Score=186.72  Aligned_cols=161  Identities=19%  Similarity=0.285  Sum_probs=126.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      +.++|+|+|++|||||||+++|+++.  ..+.++++..+.  ...........+.+||+||++.+..+...+    ++  
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~--   73 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR--KEIEVDSSPSVLEILDTAGTEQFASMRDLY----IK--   73 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTCCHHHHHHH----HH--
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----hc--
Confidence            46899999999999999999999864  355567664432  222112222379999999999988888777    11  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|+|++++.++ +.+..|+..+.+...                            ..++|+++|+||+|+..  
T Consensus        74 ~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~--  122 (167)
T 1kao_A           74 NGQGFILVYSLVNQQSF-QDIKPMRDQIIRVKR----------------------------YEKVPVILVGNKVDLES--  122 (167)
T ss_dssp             HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHTT----------------------------TSCCCEEEEEECGGGGG--
T ss_pred             cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECCcccc--
Confidence            48999999999999998 788888876655432                            13689999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .+....++.+.++..+|+++++|||+++.|++++++.|...+
T Consensus       123 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          123 ---EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             ---GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             ---cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence               455566778889999999999999999999999999998765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.87  E-value=2.5e-21  Score=194.39  Aligned_cols=165  Identities=16%  Similarity=0.198  Sum_probs=131.6

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.+|++..|..  ..........+++|||||++.+..+...+    ++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~   93 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH--VMKYKNEEFILHLWDTAGQEEYDRLRPLS----YA   93 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGTTTGGGG----CT
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE--EEEECCEEEEEEEEECCCcHHHHHHhHhh----cc
Confidence            4457999999999999999999999864  3667888876542  22222223378999999999988887777    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        ++|++|+|||++++.++ +.+ ..|+..+.....                              ++|+++|+||+|+.
T Consensus        94 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~  140 (194)
T 3reg_A           94 --DSDVVLLCFAVNNRTSF-DNISTKWEPEIKHYID------------------------------TAKTVLVGLKVDLR  140 (194)
T ss_dssp             --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT------------------------------TSEEEEEEECGGGC
T ss_pred             --CCcEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------------------CCCEEEEEEChhhc
Confidence              59999999999999998 554 778877664321                              48999999999996


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCe-EEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~-l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .   ...+.+..+++.+++..+|+. +++|||++|.|++++++.|.+.++.
T Consensus       141 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          141 K---DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             C---TTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             c---CCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence            3   124667778899999999998 9999999999999999999988754

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.87  E-value=2.2e-21  Score=193.96  Aligned_cols=164  Identities=19%  Similarity=0.281  Sum_probs=130.7

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.++++.+|....... ......+.+||+||++.+..+...+    ++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~   93 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYR-HDKRIKLQIWDTAGQERYRTITTAY----YR   93 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEE-TTEEEEEEEEECCSCCSSCCSGGGG----GT
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEE-CCeEEEEEEEeCCCcHHHhhhHHHh----cc
Confidence            3456899999999999999999999864  456688887765333222 1123489999999999887777666    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++.++ +.+..|+..+.+..                             ..++|++||+||+|+..
T Consensus        94 --~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~~  141 (189)
T 2gf9_A           94 --GAMGFLLMYDIANQESF-AAVQDWATQIKTYS-----------------------------WDNAQVILVGNKCDLED  141 (189)
T ss_dssp             --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG
T ss_pred             --CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECccccc
Confidence              59999999999999998 78888888776532                             12589999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           .+....+++++++..+|+.+++|||+++.|++++++.|...+.
T Consensus       142 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  184 (189)
T 2gf9_A          142 -----ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC  184 (189)
T ss_dssp             -----GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence                 4455567889999999999999999999999999999988764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.87  E-value=3.1e-21  Score=192.77  Aligned_cols=164  Identities=19%  Similarity=0.261  Sum_probs=132.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.++++.++........ .....+.+||+||++.+..+...+    ++ 
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   87 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSY----YR-   87 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGCTTHHHH----HT-
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhhhhhHHHH----Hh-
Confidence            356899999999999999999999864  4566888877654333321 122379999999999888887777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+.....                             .++|+++|+||+|+.. 
T Consensus        88 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~p~ilv~nK~Dl~~-  135 (196)
T 3tkl_A           88 -GAHGIIVVYDVTDQESF-NNVKQWLQEIDRYAS-----------------------------ENVNKLLVGNKCDLTT-  135 (196)
T ss_dssp             -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCTT-
T ss_pred             -hCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECccccc-
Confidence             49999999999999998 788889887765432                             2689999999999853 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+......++.++..+++++++|||+++.|++++++.|...+..
T Consensus       136 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          136 ----KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             ----TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                44555677899999999999999999999999999999888754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.87  E-value=1.8e-21  Score=188.72  Aligned_cols=161  Identities=16%  Similarity=0.182  Sum_probs=129.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+|+|++|||||||+++|+++.  ..+.+|++.++....... ......+.+||+||+..+..+...+    ++  
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~--   76 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAY----YR--   76 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHH----HT--
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHHHHHH----hc--
Confidence            47899999999999999999999863  466788888865433322 1123389999999998887776666    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++++|+|++++.++ +.+..|+..+....                              .++|+++|+||+|+..  
T Consensus        77 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~--  123 (168)
T 1z2a_A           77 GAQACVLVFSTTDRESF-EAISSWREKVVAEV------------------------------GDIPTALVQNKIDLLD--  123 (168)
T ss_dssp             TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHH------------------------------CSCCEEEEEECGGGGG--
T ss_pred             CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC------------------------------CCCCEEEEEECcccCc--
Confidence            49999999999999988 78888888776543                              1589999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                         .+....++++.++..++++++++||+++.|++++++.|...++
T Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          124 ---DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             ---GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             ---ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence               3445567788999999999999999999999999999988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.87  E-value=1.9e-21  Score=199.99  Aligned_cols=170  Identities=18%  Similarity=0.193  Sum_probs=131.7

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      .....+||+|+|++|||||||+++|+++.  ..+.+|++.+|.  ...........++|||++|++++..+...+    +
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~   96 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT--ACLETEEQRVELSLWDTSGSPYYDNVRPLC----Y   96 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEEC--CEEEEEEEEECCSGGGTTTGGGG----C
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE--EEEEECCEEEEEEEEECCCCHhHHHHHHHH----c
Confidence            35568999999999999999999999864  466788887653  222222223489999999999988888777    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|||++++.++.+.+..|+..+.+..                              .++|++|||||+|+.
T Consensus        97 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~  144 (214)
T 3q3j_B           97 S--DSDAVLLCFDISRPETVDSALKKWRTEILDYC------------------------------PSTRVLLIGCKTDLR  144 (214)
T ss_dssp             T--TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC------------------------------TTSEEEEEEECGGGG
T ss_pred             C--CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhhc
Confidence            2  59999999999999998333789998876642                              158999999999996


Q ss_pred             CCCC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCC-HHHHHHHHHHHHhc
Q psy11649        189 ENLE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGL-VKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~n-Id~Lk~~I~~~lf~  238 (890)
                      .+..       ...+.+..+++..++..+++ ++++|||+++.| ++++++.|...+..
T Consensus       145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             GCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             cchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence            3210       01256778889999999999 999999999998 99999999988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=4.6e-22  Score=199.56  Aligned_cols=166  Identities=16%  Similarity=0.264  Sum_probs=134.2

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      .....+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......++|||+||++.+..+...+    +
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~   93 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTITTAY----Y   93 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHHHHHH----H
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHHHHHH----H
Confidence            34567999999999999999999999854  456677777765433322 2233489999999999888888777    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|||++++.++ +.+..|+..+....                             ..++|++||+||+|+.
T Consensus        94 ~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~  141 (191)
T 3dz8_A           94 R--GAMGFILMYDITNEESF-NAVQDWATQIKTYS-----------------------------WDNAQVILVGNKCDME  141 (191)
T ss_dssp             T--TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCG
T ss_pred             c--cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECCCCc
Confidence            2  59999999999999998 88888988776532                             1268999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           +.+....+.++.++..+|+++++|||+++.|++++++.|.+.+..
T Consensus       142 -----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          142 -----EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD  186 (191)
T ss_dssp             -----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -----cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence                 355667788899999999999999999999999999999888743

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.87  E-value=3.9e-21  Score=190.44  Aligned_cols=164  Identities=19%  Similarity=0.223  Sum_probs=130.9

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++.+..+...+    ++ 
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-   81 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSY----YR-   81 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTT----ST-
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHH----Hh-
Confidence            457899999999999999999999864  456678887754332222 1112389999999999988887777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+....                             ..++|+++|+||+|+.. 
T Consensus        82 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~piilv~nK~Dl~~-  129 (186)
T 2bme_A           82 -GAAGALLVYDITSRETY-NALTNWLTDARMLA-----------------------------SQNIVIILCGNKKDLDA-  129 (186)
T ss_dssp             -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG-
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccccc-
Confidence             59999999999999998 78888887765532                             12689999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.....+++.++..+++++++|||+++.|++++++.|.+.+..
T Consensus       130 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          130 ----DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             ----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence                34555677889999999999999999999999999999888754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.87  E-value=1.8e-21  Score=195.19  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=128.3

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      .....+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......++|||+||++++..+...+    +
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~   91 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSY----Y   91 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHH----H
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhhHHHH----h
Confidence            34567999999999999999999999864  345678887765333322 1122489999999998887776666    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|+|++++.++ +.+..|+..+....                             ..++|++||+||+|+.
T Consensus        92 ~--~~d~ii~v~d~~~~~s~-~~~~~~l~~i~~~~-----------------------------~~~~piilv~nK~Dl~  139 (191)
T 2a5j_A           92 R--GAAGALLVYDITRRETF-NHLTSWLEDARQHS-----------------------------SSNMVIMLIGNKSDLE  139 (191)
T ss_dssp             T--TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCG
T ss_pred             c--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECcccC
Confidence            2  59999999999999998 78888888776532                             1268999999999995


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .     .+.+..++++.++..+++.+++|||+++.|++++++.|...+..
T Consensus       140 ~-----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          140 S-----RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             G-----GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             C-----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2     44556677889999999999999999999999999999887743

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.87  E-value=1.3e-21  Score=190.17  Aligned_cols=160  Identities=18%  Similarity=0.263  Sum_probs=122.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .++|+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++.+..+...+    ++  +
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~----~~--~   75 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAY----YR--G   75 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHH----HT--T
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhhHHHH----hc--c
Confidence            5899999999999999999999864  456788887765433322 1123479999999998887766666    22  4


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|+|++++.++ +.+..|+..+.+...                             .++|+++|+||+|+.    
T Consensus        76 ~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~----  121 (170)
T 1g16_A           76 AMGIILVYDITDERTF-TNIKQWFKTVNEHAN-----------------------------DEAQLLLVGNKSDME----  121 (170)
T ss_dssp             EEEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCT----
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECccCC----
Confidence            8999999999999987 788888887765321                             268999999999983    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+....+.++.++..+|+++++|||+++.|++++++.|.+.+.
T Consensus       122 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          122 --TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             --TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             --cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence              3445566788899999999999999999999999999988874

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.87  E-value=5.2e-21  Score=184.82  Aligned_cols=161  Identities=19%  Similarity=0.258  Sum_probs=125.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+|+|++|||||||+++|+++.  ..+.++++..+.  ...........+.+||+||+.++..+...+    ++  
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~----~~--   74 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEEVQIDILDTAGQEDYAAIRDNY----FR--   74 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCC---CHHHHHHH----HH--
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE--EEEEECCEEEEEEEEECCCcchhHHHHHHH----hh--
Confidence            46899999999999999999999864  455677775543  211112222379999999999888888777    11  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|||++++.++ +.+..|+..+.+...                            ..++|+++|+||+|+..  
T Consensus        75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~--  123 (168)
T 1u8z_A           75 SGEGFLCVFSITEMESF-AATADFREQILRVKE----------------------------DENVPFLLVGNKSDLED--  123 (168)
T ss_dssp             HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHC----------------------------CTTSCEEEEEECGGGGG--
T ss_pred             cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECccccc--
Confidence            49999999999999998 888888887766432                            12589999999999952  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .+....++++.++..++++++++||+++.|++++++.|...+
T Consensus       124 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          124 ---KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             ---GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ---cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence               344556788889999999999999999999999999998776

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.86  E-value=3e-21  Score=194.25  Aligned_cols=165  Identities=18%  Similarity=0.235  Sum_probs=127.4

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      .....++|+|+|++|||||||+++|+++.  ..+.++++.++........ .....+.+||++|++++..+...+    +
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~----~   96 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAY----Y   96 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHHH----H
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcHHHHHHHHHH----h
Confidence            34567899999999999999999999864  3567888877654333321 122379999999999988887777    1


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|||++++.++ +.+..|++.+....                             ..++|++||+||+|+.
T Consensus        97 ~--~~d~iilV~D~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilV~NK~Dl~  144 (192)
T 2il1_A           97 R--SAKGIILVYDITKKETF-DDLPKWMKMIDKYA-----------------------------SEDAELLLVGNKLDCE  144 (192)
T ss_dssp             H--HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGG
T ss_pred             c--CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECcccc
Confidence            2  49999999999999998 78888887765532                             1268999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .     .+.+..+++++++..+ ++.+++|||++|.|++++++.|...+.
T Consensus       145 ~-----~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          145 T-----DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             G-----GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             c-----ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            2     4555567788899885 889999999999999999999988764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.86  E-value=3.7e-21  Score=189.64  Aligned_cols=163  Identities=15%  Similarity=0.125  Sum_probs=124.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ...+||+|+|++|||||||+++|+++.. .+.||++..|.  ...........+++||++|+++.     .+    ++  
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~-----~~----~~--   71 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK--KEMLVDGQTHLVLIREEAGAPDA-----KF----SG--   71 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEE--EEEEETTEEEEEEEEECSSSCCH-----HH----HH--
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEE--EEEEECCEEEEEEEEECCCCchh-----HH----HH--
Confidence            4579999999999999999999998632 36688885542  22222222347999999999762     23    11  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++.++ +.+..|++.+.+....                          ...++|++|||||+|+..  
T Consensus        72 ~~d~~ilv~D~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl~~--  122 (178)
T 2iwr_A           72 WADAVIFVFSLEDENSF-QAVSRLHGQLSSLRGE--------------------------GRGGLALALVGTQDRISA--  122 (178)
T ss_dssp             HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCS--------------------------SSCCCEEEEEEECTTCBT--
T ss_pred             hCCEEEEEEECcCHHHH-HHHHHHHHHHHHHHhc--------------------------CCCCCCEEEEEECccccc--
Confidence            38999999999999998 8888888766654321                          123689999999999842  


Q ss_pred             CcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       ...+.+..+++++++..+ ++++++|||++|.|++++++.|...+..
T Consensus       123 -~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          123 -SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             -TBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             -cccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence             124556677888898886 6899999999999999999999887754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.86  E-value=3.2e-21  Score=195.48  Aligned_cols=165  Identities=17%  Similarity=0.154  Sum_probs=126.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~  108 (890)
                      ....+||+|+|++|||||||+++|++.  ...+.++++.++...... .......+.+||++|+..+.. +...+    +
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~~~~~~~~~----~   94 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIM-VDKEEVTLVVYDIWEQGDAGGWLRDHC----L   94 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEE-ETTEEEEEEEECCCCCSGGGHHHHHHH----H
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEE-ECCEEEEEEEEecCCCccchhhhHHHh----h
Confidence            445799999999999999999999863  334556777665432222 122234899999999987765 55555    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  +++++|+|||++++.+| +.+..|+..+.....                            ..++|+++||||+|+.
T Consensus        95 ~--~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~  143 (195)
T 3cbq_A           95 Q--TGDAFLIVFSVTDRRSF-SKVPETLLRLRAGRP----------------------------HHDLPVILVGNKSDLA  143 (195)
T ss_dssp             H--HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHST----------------------------TSCCCEEEEEECTTCT
T ss_pred             c--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEeechhcc
Confidence            2  48999999999999998 888889887655321                            1268999999999995


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .     .+.+..++++.++..+++.+++|||+++.|++++++.|...+.
T Consensus       144 ~-----~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  187 (195)
T 3cbq_A          144 R-----SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR  187 (195)
T ss_dssp             T-----TCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             c-----cCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence            2     4555667788999999999999999999999999999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.86  E-value=2.2e-21  Score=191.77  Aligned_cols=164  Identities=19%  Similarity=0.225  Sum_probs=129.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++  ...+.+|++..+.  ...........+++||+||++.+..+...+    ++ 
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-   76 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT--KLITVNGQEYHLQLVDTAGQDEYSIFPQTY----SI-   76 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCCCTTCCCCGGG----TT-
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEE--EEEEECCEEEEEEEEeCCCchhhhHHHHHH----Hh-
Confidence            35789999999999999999999975  3466678876652  222222223478999999999887776666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+.+...                            ..++|+++|+||+|+.  
T Consensus        77 -~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ilv~nK~Dl~--  124 (181)
T 3t5g_A           77 -DINGYILVYSVTSIKSF-EVIKVIHGKLLDMVG----------------------------KVQIPIMLVGNKKDLH--  124 (181)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHC--------------------------------CCEEEEEECTTCT--
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccch--
Confidence             59999999999999998 888888887765432                            2358999999999985  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         +.+.+..++++.++..++++++++||+++.|++++++.|...+..
T Consensus       125 ---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          125 ---MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK  169 (181)
T ss_dssp             ---TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred             ---hcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence               256667788999999999999999999999999999999888754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=4e-21  Score=193.08  Aligned_cols=162  Identities=15%  Similarity=0.263  Sum_probs=130.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++.+..+...+    ++ 
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   94 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSLAPMY----YR-   94 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGGTHHH----HT-
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhhhHHh----hc-
Confidence            457899999999999999999999864  356788887754332222 2223489999999999888877776    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+.+..                             ..++|+++|+||+|+.. 
T Consensus        95 -~~d~iilV~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piiiv~NK~Dl~~-  142 (192)
T 2fg5_A           95 -GSAAAVIVYDITKQDSF-YTLKKWVKELKEHG-----------------------------PENIVMAIAGNKCDLSD-  142 (192)
T ss_dssp             -TCSEEEEEEETTCTHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG-
T ss_pred             -cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhC-----------------------------CCCCcEEEEEECccccc-
Confidence             49999999999999998 88888988776532                             12689999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          .+.+..+++++++..+++++++|||+++.|++++++.|...+
T Consensus       143 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  184 (192)
T 2fg5_A          143 ----IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI  184 (192)
T ss_dssp             ----GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             ----ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence                355566788999999999999999999999999999998875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.86  E-value=2e-21  Score=188.68  Aligned_cols=161  Identities=20%  Similarity=0.176  Sum_probs=110.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .+||+|+|++|||||||+++|++... ...++.+..+.  ...........+.+||++|++.+..+...+    ++  ++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~--~~   73 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD--RSIVVDGEEASLMVYDIWEQDGGRWLPGHC----MA--MG   73 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEEE--EEEEETTEEEEEEEEECC---------------------C
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE--EEEEECCEEEEEEEEECCCCccchhhhhhh----hh--hC
Confidence            57999999999999999999998543 33355554432  222222233489999999999888887777    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|||++++.++ +.+..|+..+.+..                            ...++|+++|+||+|+..    
T Consensus        74 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~p~ilv~nK~Dl~~----  120 (166)
T 3q72_A           74 DAYVIVYSVTDKGSF-EKASELRVQLRRAR----------------------------QTDDVPIILVGNKSDLVR----  120 (166)
T ss_dssp             CEEEEEEETTCHHHH-HHHHHHHHHHHHCC-------------------------------CCCEEEEEECTTCCS----
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEecccccc----
Confidence            999999999999998 88888887665421                            123689999999999963    


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       .+....+..+.++..+++++++|||++|.|++++++.|.+.+.
T Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  163 (166)
T 3q72_A          121 -SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR  163 (166)
T ss_dssp             -SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             -ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Confidence             4556677788999999999999999999999999999988763

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.86  E-value=6.4e-21  Score=187.10  Aligned_cols=165  Identities=15%  Similarity=0.231  Sum_probs=130.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .+..++|+|+|++|||||||+++|+++.  ..+.+|++..|.  ...........+++||+||++.+..+...+    ++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~----~~   79 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT--KICSVDGIPARLDILDTAGQEEFGAMREQY----MR   79 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTTTSCCHHHH----HH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----Hh
Confidence            3457899999999999999999999863  456678876654  222111122479999999999888777776    11


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++|+|||++++.++ +.+..|+..+.+...                            ..++|+++|+||+|+..
T Consensus        80 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piilv~nK~Dl~~  128 (181)
T 2fn4_A           80 --AGHGFLLVFAINDRQSF-NEVGKLFTQILRVKD----------------------------RDDFPVVLVGNKADLES  128 (181)
T ss_dssp             --HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT----------------------------SSCCCEEEEEECGGGGG
T ss_pred             --hCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccccc
Confidence              48999999999999998 788888877644321                            23689999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           .+.+...+++.++..+++.+++|||+++.|++++++.|...+..
T Consensus       129 -----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          129 -----QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             -----GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -----ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence                 44555677889999999999999999999999999999888743

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=2.5e-21  Score=195.71  Aligned_cols=169  Identities=17%  Similarity=0.251  Sum_probs=121.9

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      .....+||+|+|++|||||||+++|+++.  ..+.++++.++........ .....++|||+||++.+..+...+    +
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~----~   98 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-GERTVLQLWDTAGQERFRSIAKSY----F   98 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-TEEEEEEEEECTTCTTCHHHHHHH----H
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-CEEEEEEEEECCCCcchhhhHHHH----H
Confidence            34557999999999999999999999864  3566788877653333221 122379999999999988887777    1


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|||++++.++ +.+..|++.+.....                             .++|++||+||+|+.
T Consensus        99 ~--~~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~NK~Dl~  146 (199)
T 2p5s_A           99 R--KADGVLLLYDVTCEKSF-LNIREWVDMIEDAAH-----------------------------ETVPIMLVGNKADIR  146 (199)
T ss_dssp             H--HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHC--------------------------------CCEEEEEECGGGH
T ss_pred             h--hCCEEEEEEECCChHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECcccc
Confidence            1  49999999999999998 788889887765322                             258999999999985


Q ss_pred             CCCC-cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        189 ENLE-PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~d-~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .... ...+.+..+.++.++..+++++++|||+++.|++++++.|...+
T Consensus       147 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i  195 (199)
T 2p5s_A          147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV  195 (199)
T ss_dssp             HHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            2100 01345667788899999999999999999999999999998876

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.86  E-value=8.3e-21  Score=186.29  Aligned_cols=167  Identities=14%  Similarity=0.201  Sum_probs=128.4

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++.+..+...+    ++ 
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   78 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPF----YR-   78 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGG----GT-
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhHHHH----Hh-
Confidence            457899999999999999999999863  456688887764333221 1122389999999999988888777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++++|||++++.++ +.+..|+..+......                         ....++|+++|+||+|+.  
T Consensus        79 -~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~i~v~nK~Dl~--  129 (177)
T 1wms_A           79 -GSDCCLLTFSVDDSQSF-QNLSNWKKEFIYYADV-------------------------KEPESFPFVILGNKIDIS--  129 (177)
T ss_dssp             -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC-------------------------SCTTTSCEEEEEECTTCS--
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHccc-------------------------cccCCCcEEEEEECCccc--
Confidence             59999999999999998 7888899887765432                         122468999999999985  


Q ss_pred             CCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+....+++++++. ..++++++|||+++.|++++++.|...++.
T Consensus       130 ----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          130 ----ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             ----SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ----ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                34455667888888 567899999999999999999999888753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.86  E-value=4.1e-21  Score=194.63  Aligned_cols=164  Identities=20%  Similarity=0.284  Sum_probs=131.8

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|++..  ..+.++++.+|........ .....+.+||+||++.+..+...+    ++ 
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~----~~-   79 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAGQERFRTITSSY----YR-   79 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGG----GT-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHh----cc-
Confidence            346899999999999999999999864  4567888888754333321 122379999999998887776666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+....                             ..++|++||+||+|+.. 
T Consensus        80 -~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~piilv~nK~Dl~~-  127 (206)
T 2bcg_Y           80 -GSHGIIIVYDVTDQESF-NGVKMWLQEIDRYA-----------------------------TSTVLKLLVGNKCDLKD-  127 (206)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCTT-
T ss_pred             -CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCCEEEEEECCCCcc-
Confidence             59999999999999998 88888988776532                             12689999999999953 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.+..+.++.++..++++++++||++|.|++++++.|...+..
T Consensus       128 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          128 ----KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             ----TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                34555677888999999999999999999999999999888754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.86  E-value=7.6e-21  Score=187.54  Aligned_cols=166  Identities=18%  Similarity=0.237  Sum_probs=129.7

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      ..+..+||+|+|++|||||||+++|+++.  ..+.++++..+.  ...........+.+||+||+..+..+...+    +
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~   87 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEEVQIDILDTAGQEDYAAIRDNY----F   87 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTCCHHHHHHH----H
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE--EEEEECCEEEEEEEEECCCCcccHHHHHHH----h
Confidence            35567999999999999999999999864  455677775542  222112222379999999999988888777    1


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|||++++.++ +.+..|+..+.+...                            ..++|++||+||+|+.
T Consensus        88 ~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~  136 (187)
T 2a9k_A           88 R--SGEGFLCVFSITEMESF-AATADFREQILRVKE----------------------------DENVPFLLVGNKSDLE  136 (187)
T ss_dssp             H--HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHC----------------------------CTTCCEEEEEECGGGG
T ss_pred             c--cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECcccc
Confidence            1  49999999999999998 888888887766432                            1258999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .     .+....+++++++..+++++++|||+++.|++++++.|...+..
T Consensus       137 ~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          137 D-----KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             G-----GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             c-----cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            2     44556678889999999999999999999999999999887743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.86  E-value=3.9e-21  Score=192.53  Aligned_cols=165  Identities=20%  Similarity=0.310  Sum_probs=129.8

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|++..  ..+.++++.++....... ......+.+||+||++++..+...+    ++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~   96 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDTAGLERYRAITSAY----YR   96 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEE-TTEEEEEEEEEESCCCTTCTTHHHH----HT
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCchhhhhhhHHH----hc
Confidence            3456899999999999999999999864  355678887754332222 1223489999999999888877777    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++.++ +.+..|+..+...                             ...++|+++|+||+|+..
T Consensus        97 --~~d~vi~v~D~~~~~s~-~~~~~~l~~i~~~-----------------------------~~~~~piilv~nK~Dl~~  144 (193)
T 2oil_A           97 --GAVGALLVFDLTKHQTY-AVVERWLKELYDH-----------------------------AEATIVVMLVGNKSDLSQ  144 (193)
T ss_dssp             --TCCEEEEEEETTCHHHH-HTHHHHHHHHHTT-----------------------------SCTTCEEEEEEECGGGGG
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHh-----------------------------cCCCCeEEEEEECCCccc
Confidence              49999999999999987 7778888765432                             123689999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           .+.+....++.++..+++.+++|||+++.|++++++.|...+..
T Consensus       145 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          145 -----AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             -----GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             -----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                 34556677889999999999999999999999999999887743

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.86  E-value=5.4e-21  Score=187.33  Aligned_cols=163  Identities=18%  Similarity=0.249  Sum_probs=129.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .+..++|+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++.+..+...+    ++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~----~~   85 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSY----IR   85 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGSHHH----HH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHHHHHHH----hc
Confidence            3456999999999999999999999753  456688887764333322 1122379999999999888877776    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|+|++++.++ +.+..|+..+.....                             .++|+++|+||+|+..
T Consensus        86 --~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~~  133 (179)
T 2y8e_A           86 --DSTVAVVVYDITNTNSF-HQTSKWIDDVRTERG-----------------------------SDVIIMLVGNKTDLSD  133 (179)
T ss_dssp             --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT-----------------------------TSSEEEEEEECGGGGG
T ss_pred             --CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCcccc
Confidence              49999999999999987 788888887765432                             2589999999999852


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           .+.....+.+.++..+++++++|||+++.|++++++.|...+
T Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          134 -----KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             -----GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             -----cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence                 445556778888999999999999999999999999988765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.86  E-value=4.6e-21  Score=186.71  Aligned_cols=162  Identities=17%  Similarity=0.134  Sum_probs=115.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQ  111 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~  111 (890)
                      .+||+|+|++|||||||+++|++..  ..+.++.+.++...... .......+.+||++|+..+.. +...+    ++  
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~----~~--   74 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGGWLQDHC----LQ--   74 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEE-ETTEEEEEEEECCCCC--------CHH----HH--
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEE-ECCeEEEEEEEECCCccccchhhhhhh----hc--
Confidence            5799999999999999999998743  23334445454322222 222234899999999988765 44444    11  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++++|||+++++++ +.+..|+..+.....                            ..++|+++|+||+|+.   
T Consensus        75 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~ilv~nK~Dl~---  122 (169)
T 3q85_A           75 TGDAFLIVFSVTDRRSF-SKVPETLLRLRAGRP----------------------------HHDLPVILVGNKSDLA---  122 (169)
T ss_dssp             HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHST----------------------------TSCCCEEEEEECTTCG---
T ss_pred             cCCEEEEEEECCChHHH-HHHHHHHHHHHhccc----------------------------CCCCCEEEEeeCcchh---
Confidence            38999999999999998 888888877655321                            1268999999999985   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        +.+.+..+++.+++..+++++++|||+++.|++++++.|.+.+.
T Consensus       123 --~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~  166 (169)
T 3q85_A          123 --RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR  166 (169)
T ss_dssp             --GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             --hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence              35667778899999999999999999999999999999988763

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=7.7e-21  Score=184.65  Aligned_cols=162  Identities=19%  Similarity=0.215  Sum_probs=125.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+|+|++|||||||+++|+++..  .+.++++..+.  ...........+.+||+||+.++..+...+    +.  
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~----~~--   73 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR--QVISCDKSICTLQITDTTGSHQFPAMQRLS----IS--   73 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE--EEEEETTEEEEEEEEECCSCSSCHHHHHHH----HH--
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE--EEEEECCEEEEEEEEECCCchhhHHHHHHh----cc--
Confidence            368999999999999999999998643  55677775542  222112222379999999999988887777    11  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|+|++++.++ +.+..|+..+.+....                           ..++|+++|+||+|+..  
T Consensus        74 ~~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~---------------------------~~~~pii~v~nK~Dl~~--  123 (172)
T 2erx_A           74 KGHAFILVYSITSRQSL-EELKPIYEQICEIKGD---------------------------VESIPIMLVGNKCDESP--  123 (172)
T ss_dssp             HCSEEEEEEETTCHHHH-HTTHHHHHHHHHHHC------------------------------CCCEEEEEECGGGGG--
T ss_pred             cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC---------------------------CCCCCEEEEEEcccccc--
Confidence            48999999999999987 7788888777654321                           12589999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .+.......+.++..++++++++||+++.|++++++.|...+
T Consensus       124 ---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          124 ---SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             ---GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             ---ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence               344556677888999999999999999999999999998764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.86  E-value=9.4e-21  Score=187.54  Aligned_cols=162  Identities=17%  Similarity=0.273  Sum_probs=124.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+|+|++|||||||+++|+++.  ..+.++++..+.  ...........+++||+||++.+..+...+    ++  
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--   74 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQY----MR--   74 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE--EEEEETTEEEEEEEEECCCC---CTTHHHH----HH--
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE--EEEEECCcEEEEEEEECCCcHHHHHHHHHH----Hh--
Confidence            47899999999999999999999864  455566653322  222222223378999999999988888877    11  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|||++++.++ +.+..|+..+.....                            ..++|+++|+||+|+.   
T Consensus        75 ~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~p~i~v~nK~Dl~---  122 (189)
T 4dsu_A           75 TGEGFLCVFAINNTKSF-EDIHHYREQIKRVKD----------------------------SEDVPMVLVGNKCDLP---  122 (189)
T ss_dssp             HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHTT----------------------------CSCCCEEEEEECTTSS---
T ss_pred             cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEECccCc---
Confidence            48999999999999998 788888887765422                            2368999999999995   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         .+....+.++.++..++++++++||++|.|++++++.|...+..
T Consensus       123 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          123 ---SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             ---SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ---ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence               34455677889999999999999999999999999999888753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.86  E-value=1.2e-20  Score=187.76  Aligned_cols=161  Identities=17%  Similarity=0.274  Sum_probs=127.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEecccc-----------------------------
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVM-----------------------------   81 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~-----------------------------   81 (890)
                      ...++|+|+|++|||||||+++|++..  ..+.+|++.++...........                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            347899999999999999999999863  4667888877654333311100                             


Q ss_pred             -------ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649         82 -------KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRG  154 (890)
Q Consensus        82 -------k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~  154 (890)
                             ...+.|||+||++.+..+...+    ++  ++|++|+|+|++++.++ +.+..|+..+.+..           
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~~-----------  146 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLY----YR--GATCAIVVFDISNSNTL-DRAKTWVNQLKISS-----------  146 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHH----HT--TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHH----hc--CCCEEEEEEECCCHHHH-HHHHHHHHHHHhhC-----------
Confidence                   0579999999999888877776    22  49999999999999998 77888887665421           


Q ss_pred             ccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        155 SFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       155 ~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                                          ++|+++|+||+|+.      .+....+++++++..+++++++|||+++.|++++++.|.+
T Consensus       147 --------------------~~piilv~NK~D~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  200 (208)
T 3clv_A          147 --------------------NYIIILVANKIDKN------KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAE  200 (208)
T ss_dssp             --------------------CCEEEEEEECTTCC-------CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             --------------------CCcEEEEEECCCcc------cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence                                38999999999942      4455667889999999999999999999999999999988


Q ss_pred             HHh
Q psy11649        235 YAF  237 (890)
Q Consensus       235 ~lf  237 (890)
                      .++
T Consensus       201 ~~~  203 (208)
T 3clv_A          201 EIY  203 (208)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.86  E-value=4.6e-21  Score=191.65  Aligned_cols=164  Identities=18%  Similarity=0.308  Sum_probs=126.6

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh-hHHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL-EVASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~-~Li~~~r~~~~  108 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.+||+||++++. .+...+    +
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~----~   91 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSMVQHY----Y   91 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTTHHHH----H
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhhhHHH----h
Confidence            4567999999999999999999999864  356688888765433322 1122489999999998887 666666    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|||++++.++ +.+..|+..+.+...                            ..++|+++|+||+|+.
T Consensus        92 ~--~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~  140 (189)
T 1z06_A           92 R--NVHAVVFVYDMTNMASF-HSLPAWIEECKQHLL----------------------------ANDIPRILVGNKCDLR  140 (189)
T ss_dssp             T--TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHCC----------------------------CSCCCEEEEEECTTCG
T ss_pred             c--CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECcccc
Confidence            2  49999999999999998 788889887765431                            2368999999999995


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCC---CCHHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP---GLVKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~---~nId~Lk~~I~~~l  236 (890)
                      .     .+.+..+.+++++..+++.+++|||+++   .|++++++.|...+
T Consensus       141 ~-----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          141 S-----AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             G-----GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred             c-----cceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence            2     4455667788999999999999999999   99999988876654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.85  E-value=2e-20  Score=180.03  Aligned_cols=159  Identities=17%  Similarity=0.271  Sum_probs=124.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTA  110 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~  110 (890)
                      ..++|+++|++|||||||+++|+++.  ..+.++++..+.  ...........+.+||+||+.++..+...+ +      
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------   73 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQYMR------   73 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCCSSCCHHHHHHHH------
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEE--EEEEECCEEEEEEEEECCCchhhhHHHHHhhc------
Confidence            36799999999999999999999863  345566664432  222122223378999999999888887777 3      


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++++|+|++++.++ +.+..|+..+.+...                            ..++|+++|+||+|+.. 
T Consensus        74 -~~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~----------------------------~~~~p~iiv~nK~Dl~~-  122 (166)
T 2ce2_X           74 -TGEGFLCVFAINNTKSF-EDIHQYREQIKRVKD----------------------------SDDVPMVLVGNKSDLAA-  122 (166)
T ss_dssp             -HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT----------------------------CSCCCEEEEEECTTCSC-
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCcEEEEEEchhhhh-
Confidence             38999999999999988 778888887765432                            12589999999999862 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           +....+.+++++..++++++++||+++.|++++++.|...+
T Consensus       123 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          123 -----RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             -----CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             -----cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence                 34456778889999999999999999999999999998775

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=188.94  Aligned_cols=165  Identities=18%  Similarity=0.244  Sum_probs=130.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....++|+|+|++|||||||+++|+++.  ..+.+|++..+.  ...........+.+||+||++.+..+...+    ++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~   84 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR--KKVVLDGEEVQIDILDTAGQEDYAAIRDNY----FR   84 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTCCHHHHHHH----HH
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE--EEEEECCEEEEEEEEcCCChhhhHHHHHHH----Hh
Confidence            4457999999999999999999999864  456677775542  222112222379999999999998888777    11


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++|+|||++++.++ +.+..|+..+.....                            ..++|++||+||+|+..
T Consensus        85 --~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~~  133 (206)
T 2bov_A           85 --SGEGFLCVFSITEMESF-AATADFREQILRVKE----------------------------DENVPFLLVGNKSDLED  133 (206)
T ss_dssp             --HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHTT----------------------------CSCCCEEEEEECTTCGG
T ss_pred             --hCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEeccCccc
Confidence              48999999999999998 888888887765432                            23689999999999952


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           .+.+..++++.++..++++++++||++|.|++++++.|...+..
T Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          134 -----KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             -----GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             -----cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                 44556678889999999999999999999999999999888754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.85  E-value=4.5e-21  Score=194.08  Aligned_cols=165  Identities=20%  Similarity=0.252  Sum_probs=128.6

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.+|++..|  ............++||||||++.+..+...+    ++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~   94 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY--SKIVTLGKDEFHLHLVDTAGQDEYSILPYSF----II   94 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE--EEEEC----CEEEEEEEECCCCTTCCCCGGG----TT
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE--EEEEEECCEEEEEEEEECCCccchHHHHHHH----Hh
Confidence            4567999999999999999999999864  45567777654  2222222233489999999999887777766    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++.++ +.+..|+..+.+...                            ..++|++||+||+|+. 
T Consensus        95 --~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~nK~Dl~-  142 (201)
T 3oes_A           95 --GVHGYVLVYSVTSLHSF-QVIESLYQKLHEGHG----------------------------KTRVPVVLVGNKADLS-  142 (201)
T ss_dssp             --TCCEEEEEEETTCHHHH-HHHHHHHHHHHC---------------------------------CCCEEEEEECTTCG-
T ss_pred             --cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcC----------------------------CCCCCEEEEEECccCc-
Confidence              59999999999999998 888888876654321                            2368999999999985 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          +.+.+...+++.++..+++++++|||+++.|++++++.|...+..
T Consensus       143 ----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          143 ----PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             ----GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ----cccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                255666778899999999999999999999999999999988754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.85  E-value=7.8e-21  Score=185.84  Aligned_cols=163  Identities=18%  Similarity=0.149  Sum_probs=116.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc--hhhHHhhhhcccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS--RLEVASLFSSFSLTA  110 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~--~~~Li~~~r~~~~~~  110 (890)
                      ..+||+|+|++|||||||+++|++... ...++.+.++...... .......+.+||++|+..  +..+...+    ++ 
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~~~~~~~~~~~----~~-   76 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLT-VDGEDTTLVVVDTWEAEKLDKSWSQESC----LQ-   76 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEE-ETTEEEEEEEECCC-------CHHHHHT----TT-
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEE-ECCEEEEEEEEecCCCCccchhhhHHhh----cc-
Confidence            468999999999999999999998643 2235666664322221 112223799999999977  44555555    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++++|||++++.++ +.+..|+..+.+..                            ...++|+++|+||+|+.. 
T Consensus        77 -~~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~----------------------------~~~~~piilv~NK~Dl~~-  125 (175)
T 2nzj_A           77 -GGSAYVIVYSIADRGSF-ESASELRIQLRRTH----------------------------QADHVPIILVGNKADLAR-  125 (175)
T ss_dssp             -SCSEEEEEEETTCHHHH-HHHHHHHHHHHHCC--------------------------------CCEEEEEECTTCTT-
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhh----------------------------ccCCCCEEEEEEChhhcc-
Confidence             58999999999999998 77888887665421                            112689999999999953 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                          .+.+..++.+.++..+++++++|||++|.|++++++.|.+.+.
T Consensus       126 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  168 (175)
T 2nzj_A          126 ----CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR  168 (175)
T ss_dssp             ----TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence                3455566788899999999999999999999999999988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.85  E-value=4.8e-21  Score=194.26  Aligned_cols=164  Identities=18%  Similarity=0.213  Sum_probs=123.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......+.|||+||++.+..+...+    ++ 
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~----~~-   96 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSVTRSY----YR-   96 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCCCHHH----HT-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHHHHHH----hc-
Confidence            457899999999999999999999863  356688887764332221 1122489999999998777666665    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+.....                             .++|++||+||+|+.. 
T Consensus        97 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~piilv~nK~Dl~~-  144 (200)
T 2o52_A           97 -GAAGALLVYDITSRETY-NSLAAWLTDARTLAS-----------------------------PNIVVILCGNKKDLDP-  144 (200)
T ss_dssp             -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHTC-----------------------------TTCEEEEEEECGGGGG-
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCcEEEEEECCCccc-
Confidence             59999999999999998 788888887665322                             2689999999999852 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.+...++..++..+++.+++|||+++.|++++++.|...+..
T Consensus       145 ----~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          145 ----EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             ----GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                44555677888999999999999999999999999999888754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1e-20  Score=195.89  Aligned_cols=165  Identities=19%  Similarity=0.163  Sum_probs=121.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhhhccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLFSSFS  107 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~r~~~  107 (890)
                      ....+||+|||++|||||||+++|++...   ...+++|.++...... .......+.+|||+|+.. +..+...+    
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~-~~~~~~~l~~~Dt~g~~~~~~~l~~~~----  108 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM-VDGESATIILLDMWENKGENEWLHDHC----  108 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE-ETTEEEEEEEECCTTTTHHHHHHHHCC----
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEE-ECCeeeEEEEeecCCCcchhhhHHHHH----
Confidence            34568999999999999999999997432   3335677775322222 122223789999999876 33444444    


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      ++  +++++|+|||++++.+| +.+..|...+.+..                            ...++|++|||||+|+
T Consensus       109 ~~--~a~~~ilVydvt~~~sf-~~~~~~~~~l~~~~----------------------------~~~~~piilVgNK~DL  157 (211)
T 2g3y_A          109 MQ--VGDAYLIVYSITDRASF-EKASELRIQLRRAR----------------------------QTEDIPIILVGNKSDL  157 (211)
T ss_dssp             CC--CCSEEEEEEETTCHHHH-HHHHHHHHHHHTSG----------------------------GGTTSCEEEEEECTTC
T ss_pred             Hh--hCCEEEEEEECCCHHHH-HHHHHHHHHHHHHh----------------------------CCCCCcEEEEEEChHH
Confidence            23  58999999999999998 78888876554311                            1126899999999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .     +.+.+...+.+.++..+++.+++|||++|.|++++++.|...+.
T Consensus       158 ~-----~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          158 V-----RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             G-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             h-----cCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5     24556667788889999999999999999999999999988763

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.85  E-value=5.6e-21  Score=197.02  Aligned_cols=164  Identities=20%  Similarity=0.283  Sum_probs=124.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|++..  ..+.++++.+|....... ......++|||+||++++..+...+    ++ 
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   84 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAITSAY----YR-   84 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGG----TT-
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhhHHHH----hc-
Confidence            456899999999999999999999864  356688888865433322 1112489999999999887777666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++.++ +.+..|+..+.....                             .++|++||+||+|+.. 
T Consensus        85 -~~d~vilV~D~~~~~s~-~~~~~~l~~i~~~~~-----------------------------~~~piilv~nK~Dl~~-  132 (223)
T 3cpj_B           85 -GAVGALIVYDISKSSSY-ENCNHWLSELRENAD-----------------------------DNVAVGLIGNKSDLAH-  132 (223)
T ss_dssp             -TCCEEEEEEC-CCHHHH-HHHHHHHHHHHHHCC-------------------------------CEEEEEECCGGGGG-
T ss_pred             -cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-----------------------------CCCeEEEEEECccccc-
Confidence             59999999999999998 788889887765321                             2589999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+.+..++++.++..+++++++|||+++.|++++++.|.+.+..
T Consensus       133 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          133 ----LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             ----GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred             ----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                44555677889999999999999999999999999999988854

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=7.7e-21  Score=189.45  Aligned_cols=164  Identities=16%  Similarity=0.226  Sum_probs=129.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|++..  ..+.++++.++....... ......+.|||+||++.+..+...+    ++ 
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   86 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTLTPSY----YR-   86 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCSHHHH----HT-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhhhHHH----hc-
Confidence            456899999999999999999999864  456788887764333322 1123489999999999888777776    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|+|++++.++ +.+..|+..+...                            ....++|+++|+||+|+.  
T Consensus        87 -~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~----------------------------~~~~~~p~ilv~nK~Dl~--  134 (195)
T 1x3s_A           87 -GAQGVILVYDVTRRDTF-VKLDNWLNELETY----------------------------CTRNDIVNMLVGNKIDKE--  134 (195)
T ss_dssp             -TCCEEEEEEETTCHHHH-HTHHHHHHHHTTC----------------------------CSCSCCEEEEEEECTTSS--
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHh----------------------------cCcCCCcEEEEEECCcCc--
Confidence             49999999999999987 7778887655331                            112368999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+....+++.+++..+++.+++|||+++.|++++++.|...+..
T Consensus       135 ----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          135 ----NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             ----SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ----ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence                34455677888999999999999999999999999999988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=8.7e-21  Score=190.13  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=128.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.+|++..|.  ...........++|||+||++++..+...+    ++ 
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~----~~-   88 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA--VSVTVGGKQYLLGLYDTAGQEDYDRLRPLS----YP-   88 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE--EEEESSSCEEEEEEECCCCSSSSTTTGGGG----CT-
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE--EEEEECCEEEEEEEEECCCCcchhHHHHHh----cC-
Confidence            356899999999999999999999863  466788886653  222222223489999999999888877776    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       ++|++|+|||++++.++ +.+. .|+..+.+...                              ++|++||+||+|+..
T Consensus        89 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------------------~~piilv~nK~Dl~~  136 (194)
T 2atx_A           89 -MTDVFLICFSVVNPASF-QNVKEEWVPELKEYAP------------------------------NVPFLLIGTQIDLRD  136 (194)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHST------------------------------TCCEEEEEECTTSTT
T ss_pred             -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------------------CCCEEEEEEChhhcc
Confidence             59999999999999998 6665 78877765321                              589999999999963


Q ss_pred             CCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +...       .++.+..+++.+++..+++ .+++|||++|.|++++++.|.+.++
T Consensus       137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             CHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            2100       1245667788999999998 8999999999999999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.85  E-value=1.5e-20  Score=188.70  Aligned_cols=162  Identities=16%  Similarity=0.150  Sum_probs=124.3

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS  107 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~  107 (890)
                      ...+..+||+|+|++|||||||+++|+++.  ..+.+|.+ +|.  ...........++||||+|++.+.    .++   
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~--~~~~~~~~~~~l~i~Dt~G~~~~~----~~~---   84 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK--KEIVVDGQSYLLLIRDEGGPPELQ----FAA---   84 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEE--EEEEETTEEEEEEEEECSSSCCHH----HHH---
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEE--EEEEECCEEEEEEEEECCCChhhh----eec---
Confidence            456778999999999999999999999864  34556633 442  222222223478999999998876    222   


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                          +++++|+|||++++.+| +.+..|+..+....                            ...++|++|||||+|+
T Consensus        85 ----~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~----------------------------~~~~~piilv~nK~Dl  131 (184)
T 3ihw_A           85 ----WVDAVVFVFSLEDEISF-QTVYNYFLRLCSFR----------------------------NASEVPMVLVGTQDAI  131 (184)
T ss_dssp             ----HCSEEEEEEETTCHHHH-HHHHHHHHHHHTTS----------------------------CGGGSCEEEEEECTTC
T ss_pred             ----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc----------------------------CCCCCCEEEEEECccc
Confidence                38999999999999998 78888988765421                            1125899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ..   ...+.+..+++++++..++ +.+++|||+++.|++++++.|...+.
T Consensus       132 ~~---~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          132 SA---ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV  179 (184)
T ss_dssp             BT---TBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             cc---ccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            42   2345667788999999997 89999999999999999999988764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.85  E-value=2.6e-21  Score=190.81  Aligned_cols=161  Identities=19%  Similarity=0.216  Sum_probs=115.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.+|++..|..  ..........+++||+||++++..+...+    ++ 
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   78 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA--NVVVNGATVNLGLWDTAGQEDYNRLRPLS----YR-   78 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC--CCC-------CEEECCCC-CTTTTTGGGG----GT-
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE--EEEECCEEEEEEEEECCCChhhhhhHHhh----cc-
Confidence            457899999999999999999999864  3556777654421  11111122368899999999888777766    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       ++|++|+|||++++.++ +.+. .|+..+....                              .++|+++|+||+|+..
T Consensus        79 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~  126 (182)
T 3bwd_D           79 -GADVFILAFSLISKASY-ENVSKKWIPELKHYA------------------------------PGVPIVLVGTKLDLRD  126 (182)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCCEEEEEECHHHHT
T ss_pred             -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEechhhhc
Confidence             59999999999999998 6665 6887766532                              1589999999999853


Q ss_pred             CCCcchhh----------hhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKR----------IAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~----------~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           .+.          +..+++.+++..+++ ++++|||+++.|++++++.|.+.++
T Consensus       127 -----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          127 -----DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             -----CHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             -----CcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence                 222          356778899999997 8999999999999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.85  E-value=8.8e-21  Score=189.06  Aligned_cols=167  Identities=17%  Similarity=0.247  Sum_probs=127.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.||++..|.  ...........+++||+||++.+..+...+    ++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~   77 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYDNVRPLS----YP   77 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEECSSCEEEEEEEEECCSGGGTTTGGGG----CT
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEECCEEEEEEEEECCCChhhhhhHHhh----cC
Confidence            3457899999999999999999999864  456788886653  222222223489999999999888777666    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        +++++|+|||++++.++ +.+ ..|+..+.+..                              .++|+++||||+|+.
T Consensus        78 --~~~~~i~v~d~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~  124 (184)
T 1m7b_A           78 --DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC------------------------------PNTKMLLVGCKSDLR  124 (184)
T ss_dssp             --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCEEEEEEECGGGG
T ss_pred             --CCcEEEEEEECCCHHHH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEEEcchhh
Confidence              59999999999999998 666 78887775532                              158999999999995


Q ss_pred             CCCC-------cchhhhhHHHHHHHHHHcC-CeEEEEecc-CCCCHHHHHHHHHHHHh
Q psy11649        189 ENLE-------PNKKRIAVQCLRYLAHVNG-ASLLFHSSL-DPGLVKRTRDILNHYAF  237 (890)
Q Consensus       189 ~d~d-------~e~r~~i~~~lr~la~~~G-a~l~etSAK-~~~nId~Lk~~I~~~lf  237 (890)
                      .+..       ...+.+..+++++++..+| +++++|||+ ++.|++++++.|...+.
T Consensus       125 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             GCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             cchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence            3100       0124456678899999988 689999999 68999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.85  E-value=2.7e-21  Score=197.63  Aligned_cols=167  Identities=13%  Similarity=0.160  Sum_probs=128.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.++++..+..............+++||+||++.+..+...+    +.
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~   83 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVY----YI   83 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHH----HT
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHH----hh
Confidence            4457999999999999999999999753  34457777654332222222222479999999998887766666    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++.++ +.+..|+..+......                             ++|+++|+||+|+..
T Consensus        84 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-----------------------------~~piilv~nK~Dl~~  131 (218)
T 4djt_A           84 --GASGAILFFDVTSRITC-QNLARWVKEFQAVVGN-----------------------------EAPIVVCANKIDIKN  131 (218)
T ss_dssp             --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCS-----------------------------SSCEEEEEECTTCC-
T ss_pred             --cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-----------------------------CCCEEEEEECCCCcc
Confidence              59999999999999998 7888998877665432                             589999999999852


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                           .+.+....++.++..+++++++|||++|.|++++++.|...+...
T Consensus       132 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  176 (218)
T 4djt_A          132 -----RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR  176 (218)
T ss_dssp             --------CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred             -----ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence                 446667788889999999999999999999999999999988543

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.85  E-value=1.2e-20  Score=186.43  Aligned_cols=167  Identities=19%  Similarity=0.179  Sum_probs=127.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      +..++|+|+|++|||||||+++|+++.  ..+.+|++..+..  ..........+++||+||++++..+...+    ++ 
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   75 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTAGQEDYDRLRPLS----YP-   75 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEE--EEEETTEEEEEEEECCCCSGGGTTTGGGG----CT-
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEE--EEEECCEEEEEEEEECCCCHhHHHHHHHh----cc-
Confidence            467899999999999999999999753  4566777755432  11112223378999999999887777666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       ++|++|+|||++++.++ +.+. .|+..+.+..                              .++|+++|+||+|+..
T Consensus        76 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~  123 (186)
T 1mh1_A           76 -QTDVSLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLRD  123 (186)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHS------------------------------TTSCEEEEEECHHHHT
T ss_pred             -CCcEEEEEEECCChhhH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEeEcccccc
Confidence             59999999999999998 6665 6887665532                              1589999999999853


Q ss_pred             CCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +...       ..+.+..++...++..+++ ++++|||++|.|++++++.|...++.
T Consensus       124 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             cchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            2100       0134556778889999997 89999999999999999999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=2.2e-20  Score=187.97  Aligned_cols=162  Identities=23%  Similarity=0.190  Sum_probs=127.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.+|++..|.  ...........+++||+||++. ..+...+    ++ 
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~----~~-   97 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR--HQATIDDEVVSMEILDTAGQED-TIQREGH----MR-   97 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCCCC-CHHHHHH----HH-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE--EEEEECCEEEEEEEEECCCCCc-ccchhhh----hc-
Confidence            457899999999999999999999864  456678876653  2121122234799999999987 5555555    12 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|++.+.+...                            ..++|++||+||+|+.. 
T Consensus        98 -~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilv~NK~Dl~~-  146 (196)
T 2atv_A           98 -WGEGFVLVYDITDRGSF-EEVLPLKNILDEIKK----------------------------PKNVTLILVGNKADLDH-  146 (196)
T ss_dssp             -HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT----------------------------TSCCCEEEEEECGGGGG-
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhhC----------------------------CCCCcEEEEEECccccc-
Confidence             48999999999999998 888888887766432                            12689999999999952 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCC-CHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPG-LVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~-nId~Lk~~I~~~lf  237 (890)
                          .+.+..++++.++..+++++++|||+++. |++++++.|...+.
T Consensus       147 ----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~  190 (196)
T 2atv_A          147 ----SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR  190 (196)
T ss_dssp             ----GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence                45566778889999999999999999999 99999999988774

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=1e-20  Score=191.72  Aligned_cols=164  Identities=18%  Similarity=0.257  Sum_probs=128.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....++|+|+|++|||||||+++|++..  ..+.++++.++........ .....+.+||+||++.+..+...+    ++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~----~~   91 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQLWDTAGQERFRTITTAY----YR   91 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-TEEEEEEEECCTTGGGGTCCCHHH----HT
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHH----hc
Confidence            3456899999999999999999999864  4567888888654333321 112379999999998887766666    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|||++++.++ +.+..|+..+.....                             .++|+++|+||+|+. 
T Consensus        92 --~~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-----------------------------~~~piilv~nK~Dl~-  138 (213)
T 3cph_A           92 --GAMGIILVYDVTDERTF-TNIKQWFKTVNEHAN-----------------------------DEAQLLLVGNKSDME-  138 (213)
T ss_dssp             --TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHTT-----------------------------TCSEEEEEEECTTCS-
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-----------------------------CCCCEEEEEECCCCc-
Confidence              59999999999999987 788888887765432                             258999999999983 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           .+....+.++.++..+++++++|||+++.|++++++.|...+..
T Consensus       139 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          139 -----TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             -----SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             -----ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                 34455667888999999999999999999999999999887743

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.85  E-value=1.1e-20  Score=192.37  Aligned_cols=162  Identities=20%  Similarity=0.203  Sum_probs=126.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.+|++..|..  ..........++|||+||++.+..+...+    ++ 
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~-   79 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA--NVAVDGQIVNLGLWDTAGQEDYSRLRPLS----YR-   79 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEE--EEECSSCEEEEEEECCCCCCCCCC--CGG----GT-
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEE--EEEECCEEEEEEEEECCCcHHHHHHHHhh----cc-
Confidence            357899999999999999999999864  4567888866532  22122223489999999999988887776    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       ++|++|+|||++++.++ +++. .|+..+....                              .++|++||+||+|+..
T Consensus        80 -~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~  127 (212)
T 2j0v_A           80 -GADIFVLAFSLISKASY-ENVLKKWMPELRRFA------------------------------PNVPIVLVGTKLDLRD  127 (212)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCCEEEEEECHHHHT
T ss_pred             -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEeCHHhhh
Confidence             59999999999999998 6664 7888776532                              1589999999999853


Q ss_pred             CCCcchhh--------hhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPNKKR--------IAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e~r~--------~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                           .+.        +..+++..++..+|+ ++++|||+++.|++++++.|...+..
T Consensus       128 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          128 -----DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             -----CHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             -----CccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence                 222        256778899999996 89999999999999999999988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.85  E-value=1.1e-20  Score=191.63  Aligned_cols=169  Identities=18%  Similarity=0.257  Sum_probs=128.6

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFS  107 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~  107 (890)
                      ......+||+|+|++|||||||+++|+++.  ..+.+|++.+|..  ..........+.+||+||++++..+...+    
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----   93 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA--DIEVDGKQVELALWDTAGQEDYDRLRPLS----   93 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE--EEEETTEEEEEEEECCCCSGGGTTTGGGG----
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE--EEEECCEEEEEEEEECCCchhHHHHHHHh----
Confidence            345567899999999999999999999863  4567888877642  12111122389999999999888777766    


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      ++  ++|++|+|||++++.++ +.+ ..|.+.+.+..                              .++|+++|+||+|
T Consensus        94 ~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~D  140 (201)
T 2gco_A           94 YP--DTDVILMCFSIDSPDSL-ENIPEKWTPEVKHFC------------------------------PNVPIILVGNKKD  140 (201)
T ss_dssp             CT--TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHS------------------------------TTCCEEEEEECGG
T ss_pred             cC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEecHH
Confidence            22  59999999999999998 566 67887665532                              1589999999999


Q ss_pred             CCCCCCcc-------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        187 LFENLEPN-------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       187 l~~d~d~e-------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +..+....       .+.+..+++..++..+++ .+++|||+++.|++++++.|...++
T Consensus       141 l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             GTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            96421100       133556778899999998 8999999999999999999988764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.85  E-value=2.8e-21  Score=194.62  Aligned_cols=169  Identities=16%  Similarity=0.182  Sum_probs=97.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC--C--CCCCCCccceeEEEEEEecccc-ceEEEEEEcCCCcchhhHHhhhhccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK--N--DTPKPTLALEYIYARKSGKTVM-KDICHLWELGSGTSRLEVASLFSSFS  107 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~--~~~kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~~~~~~Li~~~r~~~  107 (890)
                      ...++|+|+|++|||||||+++|++.  .  ..+.+|+++++........... ...+.+||+||++.+..+...+    
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----   93 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQY----   93 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTT----
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHH----
Confidence            45689999999999999999999986  3  3667888877543333221110 3489999999998888877776    


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      ++  ++|++|+|||++++.++ +.+..|+..+......                          ...++|++||+||+|+
T Consensus        94 ~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------------~~~~~piilv~nK~Dl  144 (208)
T 2yc2_C           94 WN--GVYYAILVFDVSSMESF-ESCKAWFELLKSARPD--------------------------RERPLRAVLVANKTDL  144 (208)
T ss_dssp             CC--CCCEEEEEEETTCHHHH-HHHHHHHHHHHHHCSC--------------------------TTSCCEEEEEEECC--
T ss_pred             Hh--hCcEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc--------------------------cccCCcEEEEEECccc
Confidence            22  59999999999999998 8888898877654320                          0136899999999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC-CCCHHHHHHHHHHHHhc
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD-PGLVKRTRDILNHYAFS  238 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~-~~nId~Lk~~I~~~lf~  238 (890)
                      ..+    .+.+..++++.++..+++++++|||++ +.|++++++.|...+..
T Consensus       145 ~~~----~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          145 PPQ----RHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             ---------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred             chh----hccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence            520    345556788999999999999999999 99999999999887643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.84  E-value=2.9e-20  Score=185.45  Aligned_cols=167  Identities=16%  Similarity=0.240  Sum_probs=119.3

Q ss_pred             ccCCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649         29 IDIQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF  106 (890)
Q Consensus        29 ~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~  106 (890)
                      +...+..++|+|+|++|||||||+++|+++.  ..+.++++..+.  ...........+.|||+||+..+..+...+   
T Consensus        15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~---   89 (190)
T 3con_A           15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGETCLLDILDTAGQEEYSAMRDQY---   89 (190)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCC--------------
T ss_pred             cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE--EEEEECCEEEEEEEEECCChHHHHHHHHHh---
Confidence            3345678999999999999999999999863  345566664432  222112222379999999998887777766   


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                       ++  +++++++|||++++.++ +.+..|+..+.....                            ..++|+++|+||+|
T Consensus        90 -~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~p~ilv~nK~D  137 (190)
T 3con_A           90 -MR--TGEGFLCVFAINNSKSF-ADINLYREQIKRVKD----------------------------SDDVPMVLVGNKCD  137 (190)
T ss_dssp             -CT--TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT----------------------------CSCCCEEEEEECTT
T ss_pred             -hC--cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhC----------------------------CCCCeEEEEEECCc
Confidence             22  59999999999999997 788889887765432                            12589999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +..      +....+++++++..+++++++|||+++.|++++++.|...+..
T Consensus       138 l~~------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          138 LPT------RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             CSC------CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCc------ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            852      3445677889999999999999999999999999999887743

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.84  E-value=2e-20  Score=188.74  Aligned_cols=167  Identities=15%  Similarity=0.247  Sum_probs=129.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|++..  ..+.++++.++....... ......+.+||+||+..+..+...+    ++ 
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-   79 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAF----YR-   79 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGG----GT-
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHhHHHH----Hh-
Confidence            357899999999999999999999864  456788887754333221 1123489999999998887766665    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|+|++++.++ +.+..|+..+......                         ....++|+++|+||+|+.  
T Consensus        80 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------------~~~~~~piilv~nK~Dl~--  130 (207)
T 1vg8_A           80 -GADCCVLVFDVTAPNTF-KTLDSWRDEFLIQASP-------------------------RDPENFPFVVLGNKIDLE--  130 (207)
T ss_dssp             -TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------------SSGGGSCEEEEEECTTSS--
T ss_pred             -CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhccc-------------------------ccCCCCcEEEEEECCCCc--
Confidence             59999999999999998 7888898877665421                         112358999999999995  


Q ss_pred             CCcchhhhhHHHHHHHHH-HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 LEPNKKRIAVQCLRYLAH-VNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~-~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                          .+....+.++.++. ..++++++|||++|.|++++++.|...+..
T Consensus       131 ----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          131 ----NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             ----CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                23444566777887 678899999999999999999999988764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=189.44  Aligned_cols=168  Identities=18%  Similarity=0.205  Sum_probs=123.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....++|+|+|++|||||||+++|+++.  ..+.+|++..|.  ...........+++||+||++++..+...+    ++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~~   90 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS--AVVSVDGRPVRLQLCDTAGQDEFDKLRPLC----YT   90 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE--EEEEETTEEEEEEEEECCCSTTCSSSGGGG----GT
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE--EEEEECCEEEEEEEEECCCCHHHHHHhHhh----cC
Confidence            4567999999999999999999999864  456677775543  222112222378999999999887777666    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        ++|++|+|||++++.++ +.+. .|+..+....                              .++|++||+||+|+.
T Consensus        91 --~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~p~ilv~nK~Dl~  137 (201)
T 2q3h_A           91 --NTDIFLLCFSVVSPSSF-QNVSEKWVPEIRCHC------------------------------PKAPIILVGTQSDLR  137 (201)
T ss_dssp             --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------SSSCEEEEEECGGGG
T ss_pred             --CCcEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEECHhhh
Confidence              59999999999999998 6665 7887766532                              158999999999996


Q ss_pred             CCCC-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLE-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .+..       ...+.+..+++..++..+++ ++++|||+++.|++++++.|...+..
T Consensus       138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             GCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            3100       01244566788899999998 89999999999999999999887753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.84  E-value=6e-21  Score=194.94  Aligned_cols=167  Identities=20%  Similarity=0.310  Sum_probs=128.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccc---------cceEEEEEEcCCCcchhhHH
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTV---------MKDICHLWELGSGTSRLEVA  100 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~---------~k~~l~IwDlpG~~~~~~Li  100 (890)
                      ....+||+|+|++|||||||+++|++..  ..+.+|++++|..........         ....++|||+||++++..+.
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            3457999999999999999999999864  345577777764333221110         03479999999999888877


Q ss_pred             hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      ..+    ++  ++|++|+|||++++.++ +.+..|+..+...                            ....++|++|
T Consensus       102 ~~~----~~--~~d~iilV~D~~~~~s~-~~~~~~l~~i~~~----------------------------~~~~~~piil  146 (217)
T 2f7s_A          102 TAF----FR--DAMGFLLMFDLTSQQSF-LNVRNWMSQLQAN----------------------------AYCENPDIVL  146 (217)
T ss_dssp             HHH----HT--TCCEEEEEEETTCHHHH-HHHHHHHHTCCCC----------------------------CTTTCCEEEE
T ss_pred             HHH----hc--CCCEEEEEEECcCHHHH-HHHHHHHHHHHHh----------------------------cCcCCCCEEE
Confidence            776    22  59999999999999987 7777777532210                            1113689999


Q ss_pred             EeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |+||+|+..     .+.+..+.+++++..+++.+++|||+++.|++++++.|...+..
T Consensus       147 V~NK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          147 IGNKADLPD-----QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             EEECTTCGG-----GCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EEECCcccc-----ccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            999999952     45556778899999999999999999999999999999888754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=3.4e-20  Score=185.66  Aligned_cols=162  Identities=20%  Similarity=0.237  Sum_probs=126.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...++|+|+|++|||||||+++|+++.  ..+.++++..|.  ...........+.+||+||+..+..+...+    +. 
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~-   78 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR--QVISCDKSVCTLQITDTTGSHQFPAMQRLS----IS-   78 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE--EEEEETTEEEEEEEEECCGGGSCHHHHHHH----HH-
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee--EEEEECCEEEEEEEEeCCChHHhHHHHHHh----hc-
Confidence            346899999999999999999999863  345677775543  222112222379999999999888877777    12 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+.+....                           ..++|+++|+||+|+.. 
T Consensus        79 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~---------------------------~~~~piilv~nK~Dl~~-  128 (199)
T 2gf0_A           79 -KGHAFILVFSVTSKQSL-EELGPIYKLIVQIKGS---------------------------VEDIPVMLVGNKCDETQ-  128 (199)
T ss_dssp             -HCSEEEEEEETTCHHHH-HTTHHHHHHHHHHHSC---------------------------GGGSCEEEEEECTTCSS-
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhcC---------------------------CCCCCEEEEEECccCCc-
Confidence             48999999999999988 7777787766654321                           12589999999999852 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           +....+.+..++..+++.+++|||+++.|++++++.|...+
T Consensus       129 -----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  169 (199)
T 2gf0_A          129 -----REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLE  169 (199)
T ss_dssp             -----CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             -----cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence                 34456677888999999999999999999999999998876

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.84  E-value=3.2e-21  Score=191.97  Aligned_cols=161  Identities=17%  Similarity=0.185  Sum_probs=118.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC-CC-----------CCCCccceeEEEEEEe-cccc-ceEEEEEEcCCCcchh
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-DT-----------PKPTLALEYIYARKSG-KTVM-KDICHLWELGSGTSRL   97 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-~~-----------~kptigvdY~f~~~~g-~~~~-k~~l~IwDlpG~~~~~   97 (890)
                      ....+||+|+|++|||||||++.+.+.. ..           +.+|++.+|.  .... .... ...++||||||++.+.
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL--PLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEEC--CSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeec--ccccccccCCceEEEEEeCCChHHHH
Confidence            3457999999999999999998777642 22           2346665532  2211 2222 2389999999999998


Q ss_pred             hHHhhhhccccccccCcEEEEEEeCCCc------CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649         98 EVASLFSSFSLTAQSGFTLVLMLDLSRL------NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus        98 ~Li~~~r~~~~~~~~ad~IIIV~DlSnp------~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                      .+...+    ++  ++|++|+|||++++      +++ +.+..|+..++                              .
T Consensus        89 ~~~~~~----~~--~~d~~i~v~D~~~~~~~~~~~s~-~~l~~~l~~~~------------------------------~  131 (198)
T 3t1o_A           89 ASRKLI----LR--GVDGIVFVADSAPNRLRANAESM-RNMRENLAEYG------------------------------L  131 (198)
T ss_dssp             HHHHHH----TT--TCCEEEEEEECCGGGHHHHHHHH-HHHHHHHHHTT------------------------------C
T ss_pred             HHHHHH----Hh--cCCEEEEEEECCcchhhHhHHHH-HHHHHHHHhhc------------------------------c
Confidence            888877    22  59999999999954      333 44444444221                              1


Q ss_pred             cCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        172 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      ...++|++||+||+|+..       ....+++++++..+++ ++++|||+++.|++++++.|...+..
T Consensus       132 ~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          132 TLDDVPIVIQVNKRDLPD-------ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             CTTSSCEEEEEECTTSTT-------CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEEchhccc-------ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence            223689999999999952       2456678899999999 99999999999999999999888753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.84  E-value=2.3e-20  Score=190.99  Aligned_cols=166  Identities=16%  Similarity=0.243  Sum_probs=127.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|++..  ..+.+|++.+|.  ...........++|||++|++.+..+...+    ++ 
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~-   98 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYDNVRPLS----YP-   98 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEESSSSEEEEEEEEECCSGGGTTTGGGG----CT-
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE--EEEEECCEEEEEEEEeCCCcHhhhHHHHhh----cc-
Confidence            456899999999999999999999864  456788886653  222222223489999999999888777766    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       +++++|+|||++++.++ +++ ..|+..+.+..                              .++|++|||||+|+..
T Consensus        99 -~~d~~ilv~D~~~~~s~-~~~~~~~~~~i~~~~------------------------------~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A           99 -DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC------------------------------PNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------TTCEEEEEEECGGGGG
T ss_pred             -CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHC------------------------------CCCCEEEEEechhhcc
Confidence             59999999999999998 666 78888775532                              1589999999999963


Q ss_pred             CCC-------cchhhhhHHHHHHHHHHcC-CeEEEEecc-CCCCHHHHHHHHHHHHh
Q psy11649        190 NLE-------PNKKRIAVQCLRYLAHVNG-ASLLFHSSL-DPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d-------~e~r~~i~~~lr~la~~~G-a~l~etSAK-~~~nId~Lk~~I~~~lf  237 (890)
                      +..       ...+.+..+++++++..++ +.+++|||+ ++.|++++++.|...+.
T Consensus       147 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence            110       0124456677899999988 689999999 68999999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.84  E-value=4.8e-20  Score=179.51  Aligned_cols=163  Identities=15%  Similarity=0.157  Sum_probs=117.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ...++|+|+|++|||||||+++|+++. ..+.||++..+  ......   ...+++||+||++.+..+...+    ++  
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~----~~--   73 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK---NLKFQVWDLGGLTSIRPYWRCY----YS--   73 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET---TEEEEEEEECCCGGGGGGGGGG----CT--
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC---CEEEEEEECCCChhhhHHHHHH----hc--
Confidence            456899999999999999999998854 34567776432  222222   4489999999999888877766    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|+|++++.++ +.+..|+..+...                            ....++|+++|+||+|+....
T Consensus        74 ~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~~~  124 (171)
T 1upt_A           74 NTDAVIYVVDSCDRDRI-GISKSELVAMLEE----------------------------EELRKAILVVFANKQDMEQAM  124 (171)
T ss_dssp             TCSEEEEEEETTCCTTH-HHHHHHHHHHHTC----------------------------GGGTTCEEEEEEECTTSTTCC
T ss_pred             cCCEEEEEEECCCHHHH-HHHHHHHHHHHhc----------------------------hhhCCCEEEEEEECCCCcCCC
Confidence            59999999999999998 6666666543221                            111368999999999996321


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +  .+++........+...++++++|||+++.|++++++.|...+.
T Consensus       125 ~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (171)
T 1upt_A          125 T--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK  168 (171)
T ss_dssp             C--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             C--HHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence            1  1222222222233445778999999999999999999988763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.84  E-value=3.6e-20  Score=187.26  Aligned_cols=163  Identities=20%  Similarity=0.174  Sum_probs=118.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-hhhHHhhhhccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-RLEVASLFSSFSLT  109 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-~~~Li~~~r~~~~~  109 (890)
                      ..+||+|+|++|||||||+++|++..   ....+++|.++...... .......+.+|||+|+.. ...+...+    ++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Dt~~~~~~~~~~~~~~----~~   79 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM-VDGESATIILLDMWENKGENEWLHDHC----MQ   79 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEE-ETTEEEEEEEECCCCC----CTTGGGH----HH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEE-ECCeEEEEEEEEeccCcchhhhHHHhh----cc
Confidence            46899999999999999999999632   12335677775322221 122223788999999876 33344444    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        .++++|+|||++++.+| +.+..|...+.+..                            ...++|+++|+||+|+..
T Consensus        80 --~~~~~i~v~dv~~~~s~-~~~~~~~~~l~~~~----------------------------~~~~~piilV~NK~Dl~~  128 (192)
T 2cjw_A           80 --VGDAYLIVYSITDRASF-EKASELRIQLRRAR----------------------------QTEDIPIILVGNKSDLVR  128 (192)
T ss_dssp             --HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHT----------------------------TTSCCCEEEEEECTTCGG
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhh----------------------------CCCCCeEEEEEechhhhc
Confidence              48999999999999998 78888887665431                            112689999999999852


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           .+.+...+.+.++..+++.+++|||++|.|++++++.|...+.
T Consensus       129 -----~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          129 -----XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             -----GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence                 4555566778888899999999999999999999999988763

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.83  E-value=6.8e-20  Score=183.47  Aligned_cols=174  Identities=11%  Similarity=0.080  Sum_probs=122.3

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSF  106 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~  106 (890)
                      .......+|+|+|++|||||||+++|+++..   .+.+|++..+  ....   .....++||||||++++..+...+   
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~---   83 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE---KGRVAFTVFDMGGAKKFRGLWETY---   83 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE---ETTEEEEEEEECCSGGGGGGGGGG---
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE---eCCEEEEEEECCCCHhHHHHHHHH---
Confidence            3456678999999999999999999999643   4578888442  2222   233489999999999998888777   


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                       ++  ++|++|+|||++++.+| +.+..|+..+.+.....                     .......++|++||+||+|
T Consensus        84 -~~--~~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~piilv~NK~D  138 (199)
T 4bas_A           84 -YD--NIDAVIFVVDSSDHLRL-CVVKSEIQAMLKHEDIR---------------------RELPGGGRVPFLFFANKMD  138 (199)
T ss_dssp             -CT--TCSEEEEEEETTCGGGH-HHHHHHHHHHHTSHHHH---------------------SBCTTSCBCCEEEEEECTT
T ss_pred             -Hh--cCCEEEEEEECCcHHHH-HHHHHHHHHHHhChhhh---------------------hcccccCCCCEEEEEECcC
Confidence             22  59999999999999998 77777877654432110                     0000112689999999999


Q ss_pred             CCCCCCcchhhhhHH-HHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        187 LFENLEPNKKRIAVQ-CLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       187 l~~d~d~e~r~~i~~-~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +....+  ..+.... .+..++...++.+++|||+++.|++++++.|...+..
T Consensus       139 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          139 AAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             STTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            964211  1111111 1223335578899999999999999999999888743

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.83  E-value=3.4e-20  Score=190.15  Aligned_cols=167  Identities=20%  Similarity=0.253  Sum_probs=112.9

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.+|++..|.  ...........+.|||+||++.+..+...+    ++ 
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~----~~-  104 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM--VNLQVKGKPVHLHIWDTAGQDDYDRLRPLF----YP-  104 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE--EEEEETTEEEEEEEEEC--------------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEECCEEEEEEEEECCCchhhhHHHHHH----hc-
Confidence            347899999999999999999999863  456677765542  221111223379999999999888877776    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       ++|++|+|||++++.++ +.+. .|+..+.+..                              .++|++||+||+|+..
T Consensus       105 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~~  152 (214)
T 2j1l_A          105 -DASVLLLCFDVTSPNSF-DNIFNRWYPEVNHFC------------------------------KKVPIIVVGCKTDLRK  152 (214)
T ss_dssp             -CEEEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------SSCCEEEEEECGGGGS
T ss_pred             -cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEChhhhc
Confidence             59999999999999998 6664 7887765532                              1589999999999963


Q ss_pred             CCCcc-------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        190 NLEPN-------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       190 d~d~e-------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +....       .+.+..++++.++..+|+ .+++|||++|.|++++++.|...+..
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            21000       124455678899999998 89999999999999999999888754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=5.5e-20  Score=187.22  Aligned_cols=169  Identities=17%  Similarity=0.215  Sum_probs=123.5

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      ..+..+||+|+|++|||||||+++|+++.  ..+.++++.++...  .........+.||||||++.+..+...+    +
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~   94 (207)
T 2fv8_A           21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD--IEVDGKQVELALWDTAGQEDYDRLRPLS----Y   94 (207)
T ss_dssp             GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE--EEETTEEEEEEEEECTTCTTCTTTGGGG----C
T ss_pred             ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE--EEECCEEEEEEEEECCCcHHHHHHHHhh----c
Confidence            34567899999999999999999999864  35567877665322  2111122379999999999888777666    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHH-HHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L-~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +  ++|++|+|||++++.++ +.+ ..|+..+.+..                              .++|+++|+||+|+
T Consensus        95 ~--~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl  141 (207)
T 2fv8_A           95 P--DTDVILMCFSVDSPDSL-ENIPEKWVPEVKHFC------------------------------PNVPIILVANKKDL  141 (207)
T ss_dssp             T--TCCEEEEEEETTCHHHH-HHHHHTHHHHHHHHS------------------------------TTCCEEEEEECGGG
T ss_pred             C--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEEchhh
Confidence            2  59999999999999998 566 67887665532                              15899999999999


Q ss_pred             CCCCCcc-------hhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        188 FENLEPN-------KKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       188 ~~d~d~e-------~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .......       .+.+...+...++..+++ .+++|||++|.|++++++.|...++.
T Consensus       142 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             GGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             hccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            6321000       023456678889999998 89999999999999999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.83  E-value=4.6e-20  Score=178.72  Aligned_cols=159  Identities=14%  Similarity=0.159  Sum_probs=113.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      +||+|+|++|||||||+++|+++. ..+.||++..+  .....   ....+++||+||++++..+...+    ++  ++|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~d   69 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ--NTQ   69 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEEC---SSCEEEEEECCCCGGGHHHHHHH----TT--TCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEEE---CCEEEEEEEcCCChhhHHHHHHH----hc--cCC
Confidence            489999999999999999998753 34567777432  22222   23489999999999988887776    22  599


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|+|++++.++ +.+..|+..+....                            ...++|+++|+||+|+....+  
T Consensus        70 ~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~nK~Dl~~~~~--  118 (164)
T 1r8s_A           70 GLIFVVDSNDRERV-NEAREELMRMLAED----------------------------ELRDAVLLVFANKQDLPNAMN--  118 (164)
T ss_dssp             EEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTSTTCCC--
T ss_pred             EEEEEEECCCHHHH-HHHHHHHHHHHhch----------------------------hhcCCeEEEEEECcCCcCCCC--
Confidence            99999999999998 67777776443211                            113589999999999953211  


Q ss_pred             hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+.+........+...++++++|||+++.|++++++.|...+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            111111111112223456799999999999999999998775

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.82  E-value=6.8e-20  Score=186.60  Aligned_cols=166  Identities=19%  Similarity=0.186  Sum_probs=122.0

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.++++..+.  ...........++|||+||++.+..+...+    ++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~  100 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTAGLEDYDRLRPLS----YP  100 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEE--EEEECC-CEEEEEEEEECCSGGGTTTGGGG----CT
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeE--EEEEECCEEEEEEEEECCCchhhHHHHHHH----hc
Confidence            3457999999999999999999999753  456677764432  222222223378899999999888777776    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        ++|++|+|||++++.++ +.+. .|+..+....                              .++|+++|+||+|+.
T Consensus       101 --~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl~  147 (204)
T 4gzl_A          101 --QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLR  147 (204)
T ss_dssp             --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC------------------------------SSCCEEEEEECHHHH
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC------------------------------CCCCEEEEEechhhc
Confidence              59999999999999998 6664 7887666532                              258999999999986


Q ss_pred             CCCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        189 ENLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+...       ..+.+..+++..++..+++ ++++|||++|.|++++++.|...+
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             cchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            31100       0012556778889999987 499999999999999999987654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.82  E-value=2.6e-20  Score=187.97  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEec--cccceEEEEEEcCCCcchhhHH---hhhh
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGK--TVMKDICHLWELGSGTSRLEVA---SLFS  104 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~--~~~k~~l~IwDlpG~~~~~~Li---~~~r  104 (890)
                      ......+||+|+|++|||||||+++++++.. ..+++++++........  ......++|||++|++++..+.   ..+ 
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-   92 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI-   92 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCC-GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH-
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCC-CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc-
Confidence            3456689999999999999999999888533 23666666432222211  1223489999999999987766   455 


Q ss_pred             ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649        105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK  184 (890)
Q Consensus       105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK  184 (890)
                         ++  +++++|+|||+++. .+ +.+..|.+.+.+....                           ..++|++|||||
T Consensus        93 ---~~--~~~~~i~v~d~~~~-~~-~~~~~~~~~l~~~~~~---------------------------~~~~piilv~nK  138 (196)
T 3llu_A           93 ---FR--GTGALIYVIDAQDD-YM-EALTRLHITVSKAYKV---------------------------NPDMNFEVFIHK  138 (196)
T ss_dssp             ---HH--TCSEEEEEEETTSC-CH-HHHHHHHHHHHHHHHH---------------------------CTTCEEEEEEEC
T ss_pred             ---cc--cCCEEEEEEECCCc-hH-HHHHHHHHHHHHHHhc---------------------------CCCCcEEEEEec
Confidence               22  49999999999997 22 4445544444332111                           126899999999


Q ss_pred             ccCCCCC--CcchhhhhHHHHHHHHH----HcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        185 YDLFENL--EPNKKRIAVQCLRYLAH----VNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       185 ~Dl~~d~--d~e~r~~i~~~lr~la~----~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+..+.  ....+.+.......++.    .+++.+++|||++ .|++++++.|.+.+
T Consensus       139 ~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          139 VDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            9985311  01245666777888888    7789999999999 99999998887754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.82  E-value=2.7e-20  Score=186.09  Aligned_cols=162  Identities=16%  Similarity=0.269  Sum_probs=116.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC----CCCCCCCccceeEEEEEEe--ccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK----NDTPKPTLALEYIYARKSG--KTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~----~~~~kptigvdY~f~~~~g--~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      .+||+|+|++|||||||+++|++.    ...+.+|+|+++.......  .......+++||++|++++..+...+    +
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~----~   77 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHF----M   77 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHH----H
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHH----c
Confidence            479999999999999999999984    2356788888764322221  11123489999999998887777666    2


Q ss_pred             ccccCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        109 TAQSGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +  +++++++|||++++. ++ +.+..|+..+.+..                              .++|+++||||+|+
T Consensus        78 ~--~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~------------------------------~~~piilv~nK~Dl  124 (184)
T 2zej_A           78 T--QRALYLAVYDLSKGQAEV-DAMKPWLFNIKARA------------------------------SSSPVILVGTHLDV  124 (184)
T ss_dssp             H--HSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHC------------------------------TTCEEEEEEECGGG
T ss_pred             c--CCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhC------------------------------CCCcEEEEEECCCc
Confidence            2  489999999999984 66 78888988765431                              15899999999998


Q ss_pred             CCCCCcchhhh---hHHHHHHHHHHcCCe----EEEEeccCCC-CHHHHHHHHHHHHhc
Q psy11649        188 FENLEPNKKRI---AVQCLRYLAHVNGAS----LLFHSSLDPG-LVKRTRDILNHYAFS  238 (890)
Q Consensus       188 ~~d~d~e~r~~---i~~~lr~la~~~Ga~----l~etSAK~~~-nId~Lk~~I~~~lf~  238 (890)
                      ..     .+..   .......++..+|++    +++|||+++. ++++|++.|...+..
T Consensus       125 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          125 SD-----EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CC-----HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             cc-----chhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            52     3332   234556777778886    9999999997 999999999887743

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.82  E-value=1.1e-20  Score=194.00  Aligned_cols=163  Identities=14%  Similarity=0.138  Sum_probs=125.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+.+  ...+.++++.++....... ......++||||||++.+..+...+    ++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~   86 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGLRDGY----YI   86 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCCCHHH----HT
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHHHHHH----Hh
Confidence            445799999999999999999996653  3455677776654322221 2223489999999998887777666    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++|+|||++++.++ +.+..|+..+.+...                              ++|+++|+||+|+..
T Consensus        87 --~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~~  133 (221)
T 3gj0_A           87 --QAQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCE------------------------------NIPIVLCGNKVDIKD  133 (221)
T ss_dssp             --TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHST------------------------------TCCEEEEEECTTSSS
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC------------------------------CCCEEEEEECCcccc
Confidence              59999999999999998 888889887766421                              589999999999863


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                      ..      . ......++..+++.+++|||+++.|++++++.|...+...
T Consensus       134 ~~------~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          134 RK------V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             CS------S-CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             cc------c-cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            21      1 1244567788899999999999999999999999988653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=1.3e-19  Score=180.77  Aligned_cols=157  Identities=14%  Similarity=0.160  Sum_probs=112.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      .++|+|+|++|||||||+++|+++.. .+.||++..+.  ....   .+..+++||+||++++..+...+    ++  ++
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~~   84 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVI---NNTRFLMWDIGGQESLRSSWNTY----YT--NT   84 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEE---TTEEEEEEECCC----CGGGHHH----HT--TC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--CC
Confidence            68999999999999999999997533 45567764422  2221   23589999999999888877766    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      |++|+|+|+++++++ +.+..|+..+.+..                            ...++|+++|+||+|+....+ 
T Consensus        85 d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~~~-  134 (187)
T 1zj6_A           85 EFVIVVVDSTDRERI-SVTREELYKMLAHE----------------------------DLRKAGLLIFANKQDVKECMT-  134 (187)
T ss_dssp             CEEEEEEETTCTTTH-HHHHHHHHHHHTSG----------------------------GGTTCEEEEEEECTTSTTCCC-
T ss_pred             CEEEEEEeCCCHHHH-HHHHHHHHHHHhch----------------------------hhCCCeEEEEEECCCCcCCCC-
Confidence            999999999999998 77777776554321                            113689999999999963211 


Q ss_pred             chhhhhHHHHHHHH-----HHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        194 NKKRIAVQCLRYLA-----HVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       194 e~r~~i~~~lr~la-----~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                            .+++.+..     ...++.+++|||++|.|++++++.|...+..
T Consensus       135 ------~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          135 ------VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             ------HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence                  11222221     2346789999999999999999999988743

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.81  E-value=1.1e-19  Score=181.90  Aligned_cols=163  Identities=17%  Similarity=0.195  Sum_probs=116.8

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....++|+|+|++|||||||+++|+++.  ..+.+|++.++.  ....   ....++|||+||++++..+...+    ++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~~   89 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK---GNVTIKLWDIGGQPRFRSMWERY----CR   89 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE---TTEEEEEEEECCSHHHHTTHHHH----HT
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEe---CCEEEEEEECCCCHhHHHHHHHH----Hc
Confidence            3457999999999999999999999864  356788887653  2222   23489999999999888777776    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|+|++++.++ +.+..|+..+.+.                            ....++|++||+||+|+..
T Consensus        90 --~~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~NK~Dl~~  138 (188)
T 1zd9_A           90 --GVSAIVYMVDAADQEKI-EASKNELHNLLDK----------------------------PQLQGIPVLVLGNKRDLPG  138 (188)
T ss_dssp             --TCSEEEEEEETTCGGGH-HHHHHHHHHHHTC----------------------------GGGTTCCEEEEEECTTSTT
T ss_pred             --cCCEEEEEEECCCHHHH-HHHHHHHHHHHhC----------------------------cccCCCCEEEEEECCCCcc
Confidence              59999999999999998 6777776544321                            1123689999999999963


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..+  ..+.........+...++.+++|||+++.|++++++.|...+
T Consensus       139 ~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  183 (188)
T 1zd9_A          139 ALD--EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  183 (188)
T ss_dssp             CCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             CCC--HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            211  111111111111223456899999999999999999988765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.81  E-value=1.8e-19  Score=181.39  Aligned_cols=154  Identities=18%  Similarity=0.187  Sum_probs=112.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +..+|+++|++|||||||+++|+++. ..+.+|++..+  .....   .+..+++|||||++.+..+...+    ++  +
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   90 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAI---GNIKFTTFDLGGHIQARRLWKDY----FP--E   90 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEE---TTEEEEEEECCCSGGGTTSGGGG----CT--T
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEE---CCEEEEEEECCCCHHHHHHHHHH----Hh--c
Confidence            35799999999999999999999854 35566777542  12221   12589999999999888777666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|+|++++.++ +.+..|+..+.+..                            ...++|+++|+||+|+..   
T Consensus        91 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~---  138 (190)
T 1m2o_B           91 VNGIVFLVDAADPERF-DEARVELDALFNIA----------------------------ELKDVPFVILGNKIDAPN---  138 (190)
T ss_dssp             CCEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCCEEEEEECTTSTT---
T ss_pred             CCEEEEEEECCChHHH-HHHHHHHHHHHcch----------------------------hhcCCCEEEEEECCCCcC---
Confidence            9999999999999998 77777776553311                            113689999999999953   


Q ss_pred             cchhhhhHHHHHHHHH------------HcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAH------------VNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~------------~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                          ....+++++.+.            ..++.+++|||++|.|++++++.|..
T Consensus       139 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          139 ----AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             ----CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             ----CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence                122333444432            24568999999999999999988864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.81  E-value=1.2e-19  Score=184.08  Aligned_cols=155  Identities=19%  Similarity=0.222  Sum_probs=109.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +..+|+++|++|||||||+++|+++. ..+.||++..+.  ....   .+..+++|||||++.+..+...+    ++  +
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~l~i~Dt~G~~~~~~~~~~~----~~--~   92 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTI---AGMTFTTFDLGGHIQARRVWKNY----LP--A   92 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEE---TTEEEEEEEECC----CCGGGGG----GG--G
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEE---CCEEEEEEECCCcHhhHHHHHHH----Hh--c
Confidence            35799999999999999999999853 345567765432  2221   12589999999999888877766    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|+|++++.++ +.+..|+..+.+..                            ...++|+++|+||+|+..   
T Consensus        93 ~d~~i~v~D~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~~---  140 (198)
T 1f6b_A           93 INGIVFLVDCADHERL-LESKEELDSLMTDE----------------------------TIANVPILILGNKIDRPE---  140 (198)
T ss_dssp             CSEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTSCEEEEEECTTSTT---
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHhCc----------------------------ccCCCcEEEEEECCCccc---
Confidence            9999999999999998 77777876554311                            113689999999999952   


Q ss_pred             cchhhhhHHHHHHHHHH-----------------cCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHV-----------------NGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~-----------------~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                          ....+++++++..                 .++.+++|||++|.|++++++.|...
T Consensus       141 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          141 ----AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ----cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence                2233445555442                 34679999999999999999888653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.81  E-value=5.1e-18  Score=193.83  Aligned_cols=148  Identities=16%  Similarity=0.112  Sum_probs=96.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch---------hhHHhhh
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR---------LEVASLF  103 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~---------~~Li~~~  103 (890)
                      .+|+|||.||||||||+|+|+++.   ....|+++.++.+.....   .+..+++|||||++..         ......+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   78 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW---YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNM   78 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEE---TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE---CCeEEEEEECCCccccccchHHHHHHHHHHHH
Confidence            379999999999999999999863   234467776655433332   1236899999998642         2222223


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                          ++  ++|++|+|+|.++..+..+ .+..|++   +                                .++|+++|+
T Consensus        79 ----~~--~ad~il~V~D~~~~~~~~d~~i~~~l~---~--------------------------------~~~p~ilv~  117 (439)
T 1mky_A           79 ----IR--EADLVLFVVDGKRGITKEDESLADFLR---K--------------------------------STVDTILVA  117 (439)
T ss_dssp             ----HT--TCSEEEEEEETTTCCCHHHHHHHHHHH---H--------------------------------HTCCEEEEE
T ss_pred             ----HH--hCCEEEEEEECCCCCCHHHHHHHHHHH---H--------------------------------cCCCEEEEE
Confidence                22  5999999999998766411 2222222   1                                158999999


Q ss_pred             ecccCCCCCCcchhhhhHHHH-HHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        183 GKYDLFENLEPNKKRIAVQCL-RYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~l-r~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ||+|+.      .. . ...+ ..++ .+|+ .++++||++|.|++++++.|...+
T Consensus       118 NK~D~~------~~-~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  164 (439)
T 1mky_A          118 NKAENL------RE-F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKL  164 (439)
T ss_dssp             ESCCSH------HH-H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred             eCCCCc------cc-c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence            999984      11 1 1222 3444 4676 689999999999999999998776

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.81  E-value=1.1e-19  Score=183.39  Aligned_cols=163  Identities=13%  Similarity=0.145  Sum_probs=110.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ....++|+|+|++|||||||+++|+++.. .+.||++..  ......   ....+++||+||++++..+...+    ++ 
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~-   95 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY---KNICFTVWDVGGQDKIRPLWRHY----FQ-   95 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEE---TTEEEEEEECC-----CTTHHHH----HH-
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEE---CCEEEEEEECCCCHhHHHHHHHH----hc-
Confidence            34578999999999999999999987643 345666632  222222   23489999999999888777666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|+|++++.++ +.+..|+..+.+..                            ...++|+++|+||+|+...
T Consensus        96 -~~d~iilv~D~~~~~s~-~~~~~~l~~~~~~~----------------------------~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A           96 -NTQGLIFVVDSNDRERV-QESADELQKMLQED----------------------------ELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             -TCCEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTSTTC
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHhccc----------------------------ccCCCeEEEEEECCCCCCC
Confidence             49999999999999998 77777776543211                            1135899999999999532


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+  .+++........+...++++++|||++|.|++++++.|...+
T Consensus       146 ~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  189 (192)
T 2b6h_A          146 MP--VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL  189 (192)
T ss_dssp             CC--HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred             CC--HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence            11  111111111112223456799999999999999999998775

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.81  E-value=9.8e-20  Score=180.99  Aligned_cols=163  Identities=15%  Similarity=0.145  Sum_probs=112.3

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      ....+.++|+|+|++|||||||+++|+++.. .+.+|++..+.  ....   .+..+.+||+||++++..+...+    +
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~   86 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVI---NNTRFLMWDIGGQESLRSSWNTY----Y   86 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEE---TTEEEEEEEESSSGGGTCGGGGG----G
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEE---CCEEEEEEECCCCHhHHHHHHHH----h
Confidence            3455679999999999999999999998653 45567765432  2221   23589999999999888777766    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|+|++++.++ +.+..|+..+.+..                            ...++|+++|+||+|+.
T Consensus        87 ~--~~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           87 T--NTEFVIVVVDSTDRERI-SVTREELYKMLAHE----------------------------DLRKAGLLIFANKQDVK  135 (181)
T ss_dssp             T--TCCEEEEEEETTCTTTH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTST
T ss_pred             c--cCCEEEEEEECCCHHHH-HHHHHHHHHHHhCh----------------------------hhCCCeEEEEEECCCcc
Confidence            2  59999999999999998 77777776443211                            12368999999999996


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      ...+  ..++........+...++.+++|||+++.|++++++.|..
T Consensus       136 ~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          136 ECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             TCCC--HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred             cCCC--HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence            3211  1111111000111234668999999999999999888764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.80  E-value=1.2e-19  Score=207.26  Aligned_cols=149  Identities=16%  Similarity=0.116  Sum_probs=89.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc--------chhhHHhhh
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT--------SRLEVASLF  103 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~--------~~~~Li~~~  103 (890)
                      ..+|+|+|.+|||||||+|+|++...   ...++++.+..+....  . .+..+.+|||||+.        .+......+
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~--~-~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~   79 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAE--W-LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   79 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECT--T-CSSCCEEEC---------CHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEE--E-CCceEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence            35899999999999999999998532   2234555453322221  1 12379999999985        333333333


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                          ++  ++|++|+|+|.++..+..   ..|+.   +.+                            ...++|+++|+|
T Consensus        80 ----~~--~ad~il~vvD~~~~~~~~---d~~~~---~~l----------------------------~~~~~pvilv~N  119 (436)
T 2hjg_A           80 ----MD--EADVIIFMVNGREGVTAA---DEEVA---KIL----------------------------YRTKKPVVLAVN  119 (436)
T ss_dssp             ----HH--HCSEEEEEEETTTCSCHH---HHHHH---HHH----------------------------TTCCSCEEEEEE
T ss_pred             ----HH--hCCEEEEEEeCCCCCCHH---HHHHH---HHH----------------------------HHcCCCEEEEEE
Confidence                22  499999999999987751   22222   111                            123689999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+|+...     +.    .+.++. .+|. .++++||++|.|+++|++.|...+
T Consensus       120 K~D~~~~-----~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  163 (436)
T 2hjg_A          120 KLDNTEM-----RA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF  163 (436)
T ss_dssp             CCCC--------------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTG
T ss_pred             CccCccc-----hh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhc
Confidence            9998531     11    111122 3455 689999999999999999998765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.80  E-value=3.3e-19  Score=178.33  Aligned_cols=160  Identities=14%  Similarity=0.202  Sum_probs=115.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSL  108 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~  108 (890)
                      ....++|+|+|++|||||||+++|++..   ..+.+|++..  .......   +..+.+|||||++.+..+...+    +
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~----~   88 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS---SLSFTVFDMSGQGRYRNLWEHY----Y   88 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECS---SCEEEEEEECCSTTTGGGGGGG----G
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEEC---CEEEEEEECCCCHHHHHHHHHH----H
Confidence            4557899999999999999999999854   3556777632  2222221   3489999999999988887766    2


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  ++|++|+|+|++++.++ +.+..|+..+.+...                          ....++|+++|+||+|+.
T Consensus        89 ~--~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------------~~~~~~piilv~nK~Dl~  139 (190)
T 2h57_A           89 K--EGQAIIFVIDSSDRLRM-VVAKEELDTLLNHPD--------------------------IKHRRIPILFFANKMDLR  139 (190)
T ss_dssp             G--GCSEEEEEEETTCHHHH-HHHHHHHHHHHHSTT--------------------------TTTSCCCEEEEEECTTST
T ss_pred             h--cCCEEEEEEECCCHHHH-HHHHHHHHHHHhChh--------------------------hccCCCeEEEEEeCcCcc
Confidence            2  59999999999999887 677777765543210                          011368999999999996


Q ss_pred             CCCCcchhhhhHHHHHHHHH-----HcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAH-----VNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~-----~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ...       ..+++.+.+.     ..++.+++|||+++.|++++++.|...+
T Consensus       140 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          140 DAV-------TSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             TCC-------CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cCC-------CHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence            321       1223333332     2367899999999999999999998775

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.80  E-value=3.2e-19  Score=177.26  Aligned_cols=157  Identities=19%  Similarity=0.210  Sum_probs=115.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ..++|+|+|++|||||||+++|+++. ..+.||++..  ......   ....+++|||||++++..+...+    ++  +
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~---~~~~~~~~Dt~G~~~~~~~~~~~----~~--~   85 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEH---RGFKLNIWDVGGQKSLRSYWRNY----FE--S   85 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEE---TTEEEEEEEECCSHHHHTTGGGG----CT--T
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--C
Confidence            46899999999999999999999864 3556777743  222222   24589999999998887777666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|+|++++.++ +.+..|+..+.+..                            ...++|+++|+||+|+....+
T Consensus        86 ~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------~~~~~piilv~nK~Dl~~~~~  136 (186)
T 1ksh_A           86 TDGLIWVVDSADRQRM-QDCQRELQSLLVEE----------------------------RLAGATLLIFANKQDLPGALS  136 (186)
T ss_dssp             CSEEEEEEETTCGGGH-HHHHHHHHHHHTCG----------------------------GGTTCEEEEEEECTTSTTCCC
T ss_pred             CCEEEEEEECcCHHHH-HHHHHHHHHHHhCh----------------------------hcCCCcEEEEEeCccCCCCCC
Confidence            9999999999999998 77777776443311                            123689999999999963211


Q ss_pred             cchhhhhHHHHH-HHH----HHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLR-YLA----HVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr-~la----~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                             ..++. .+.    ...++++++|||+++.|++++++.|.+.+.
T Consensus       137 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  179 (186)
T 1ksh_A          137 -------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS  179 (186)
T ss_dssp             -------HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                   11111 111    234678999999999999999999988874

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.80  E-value=1.9e-19  Score=179.65  Aligned_cols=156  Identities=17%  Similarity=0.189  Sum_probs=112.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ..++|+++|++|||||||+++|++... .+.||+|..  ......   ....+++||+||++.+..+...+    ++  +
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~---~~~~l~i~Dt~G~~~~~~~~~~~----~~--~   83 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQS---QGFKLNVWDIGGQRKIRPYWRSY----FE--N   83 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEE---TTEEEEEEECSSCGGGHHHHHHH----HT--T
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEE---CCEEEEEEECCCCHHHHHHHHHH----hC--C
Confidence            468999999999999999999998643 345666632  212221   14589999999999988887776    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|+|+++++++ +.+..|+..+.+.                            ....++|+++|+||+|+.....
T Consensus        84 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~NK~Dl~~~~~  134 (181)
T 1fzq_A           84 TDILIYVIDSADRKRF-EETGQELTELLEE----------------------------EKLSCVPVLIFANKQDLLTAAP  134 (181)
T ss_dssp             CSEEEEEEETTCGGGH-HHHHHHHHHHTTC----------------------------GGGTTCCEEEEEECTTSTTCCC
T ss_pred             CCEEEEEEECcCHHHH-HHHHHHHHHHHhC----------------------------hhhcCCCEEEEEECcCcccCCC
Confidence            9999999999999998 6677776543221                            1123689999999999963211


Q ss_pred             cchhhhhHHHHH-HH----HHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLR-YL----AHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr-~l----a~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                             .+++. .+    +...++.+++|||++|.|++++++.|...+
T Consensus       135 -------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          135 -------ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV  176 (181)
T ss_dssp             -------HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             -------HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence                   11111 11    122356799999999999999999988765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.79  E-value=1.9e-21  Score=196.49  Aligned_cols=162  Identities=19%  Similarity=0.266  Sum_probs=117.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++..  .+.++++.++........ .....+.|||+||++.+..+...+    ++ 
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~----~~-  104 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSY----YR-  104 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-TEEEEEEEECCTTCTTCCCCSCC------C-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHH----hh-
Confidence            4568999999999999999999998643  445777777654333321 122379999999998887776666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++|+|||++++.++ +.+..|+..+...                             ...++|++||+||+|+.. 
T Consensus       105 -~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~-----------------------------~~~~~p~ilv~nK~Dl~~-  152 (199)
T 3l0i_B          105 -GAHGIIVVYDVTDQESF-NNVKQWLQEIDRY-----------------------------ASENVNKLLVGNKCDLTT-  152 (199)
T ss_dssp             -CCSEEEECC-CCCSHHH-HHHHHHHHHHHSC-----------------------------C-CCSEEEEC-CCSSCC--
T ss_pred             -cCCEEEEEEECCCHHHH-HHHHHHHHHHHHh-----------------------------ccCCCCEEEEEECccCCc-
Confidence             59999999999999998 7888888766432                             123689999999999853 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          .+......++.++..+++++++|||+++.|++++++.|...+
T Consensus       153 ----~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l  194 (199)
T 3l0i_B          153 ----KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI  194 (199)
T ss_dssp             -----CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred             ----cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence                333334457788999999999999999999999998887654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.79  E-value=4.7e-20  Score=198.01  Aligned_cols=154  Identities=18%  Similarity=0.154  Sum_probs=110.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH----------Hh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV----------AS  101 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L----------i~  101 (890)
                      +.++|+|+|++|||||||+|+|++...  ...|+++++.........   ...+.+|||||++++..+          ..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT---DHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS---SCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC---CCceEEEECcCCCccccccccCCHHHHHHH
Confidence            468999999999999999999999642  334777777443333221   237899999999876522          22


Q ss_pred             hhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649        102 LFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI  181 (890)
Q Consensus       102 ~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV  181 (890)
                      .+    +...++|++|+|+|.+++++.    ..|...+.+                                .++|+++|
T Consensus        79 ~~----~~~~~~d~ii~VvD~~~~~~~----~~~~~~l~~--------------------------------~~~p~ivv  118 (274)
T 3i8s_A           79 HY----ILSGDADLLINVVDASNLERN----LYLTLQLLE--------------------------------LGIPCIVA  118 (274)
T ss_dssp             HH----HHHTCCSEEEEEEEGGGHHHH----HHHHHHHHH--------------------------------HTCCEEEE
T ss_pred             HH----HhhcCCCEEEEEecCCChHHH----HHHHHHHHh--------------------------------cCCCEEEE
Confidence            22    100159999999999986543    333333322                                15899999


Q ss_pred             eecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        182 GGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +||+|+..      ..........++..+|+++++|||++|.|++++++.|...+
T Consensus       119 ~NK~Dl~~------~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          119 LNMLDIAE------KQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             EECHHHHH------HTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             EECccchh------hhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            99999852      22223346778889999999999999999999999987765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.79  E-value=2.1e-19  Score=179.29  Aligned_cols=162  Identities=16%  Similarity=0.144  Sum_probs=114.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +.++|+|+|++|||||||+++|+++.. .+.||++..+  .....   ....+++|||||++++..+...+    ++  +
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~Dt~G~~~~~~~~~~~----~~--~   89 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQY---KNISFEVWDLGGQTGVRPYWRCY----FS--D   89 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEE---TTEEEEEEEECCSSSSCCCCSSS----ST--T
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEE---CCEEEEEEECCCCHhHHHHHHHH----hh--c
Confidence            468999999999999999999987543 4567777442  22222   23489999999998877766655    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|+|++++.++ +.+..|+..+...                            ....++|+++|+||+|+....+
T Consensus        90 ~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~~~~  140 (189)
T 2x77_A           90 TDAVIYVVDSTDRDRM-GVAKHELYALLDE----------------------------DELRKSLLLIFANKQDLPDAAS  140 (189)
T ss_dssp             CCEEEEEEETTCCTTH-HHHHHHHHHHHTC----------------------------STTTTCEEEEEEECTTSTTCCC
T ss_pred             CCEEEEEEeCCCHHHH-HHHHHHHHHHHhh----------------------------hhcCCCeEEEEEECCCCcCCCC
Confidence            9999999999999998 6666666543221                            1123689999999999963211


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+++........+...++++++|||+++.|++++++.|...+.
T Consensus       141 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  183 (189)
T 2x77_A          141 --EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR  183 (189)
T ss_dssp             --HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence              1111111111222334668999999999999999999988774

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.79  E-value=6.9e-19  Score=172.77  Aligned_cols=153  Identities=17%  Similarity=0.123  Sum_probs=107.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh-h
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF-S  104 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~-r  104 (890)
                      ..++|+|+|++|||||||+++|++..  ..+.|++++++.......   ....+++|||||++++.      .+...+ +
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NGEKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEE---TTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEE---CCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            35799999999999999999999853  233466666543322221   13479999999998763      344444 2


Q ss_pred             ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649        105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK  184 (890)
Q Consensus       105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK  184 (890)
                      .     .+++++++|+|.++.+    .+..|+..+.+                                .++|+++|+||
T Consensus        79 ~-----~~~~~~i~v~D~~~~~----~~~~~~~~~~~--------------------------------~~~p~ilv~nK  117 (165)
T 2wji_A           79 N-----EKPDLVVNIVDATALE----RNLYLTLQLME--------------------------------MGANLLLALNK  117 (165)
T ss_dssp             H-----HCCSEEEEEEETTCHH----HHHHHHHHHHH--------------------------------TTCCEEEEEEC
T ss_pred             c-----CCCCEEEEEecCCchh----HhHHHHHHHHh--------------------------------cCCCEEEEEEc
Confidence            1     1489999999999853    34456654432                                15899999999


Q ss_pred             ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+..     .+.+. .+.+.++..+|+++++|||++|.|++++++.|...+
T Consensus       118 ~Dl~~-----~~~~~-~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          118 MDLAK-----SLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             HHHHH-----HTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             hHhcc-----ccChh-hHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            99842     22221 246778888999999999999999999999987764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.79  E-value=1.8e-18  Score=188.74  Aligned_cols=161  Identities=16%  Similarity=0.166  Sum_probs=120.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-----hhHHhhh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-----LEVASLF  103 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-----~~Li~~~  103 (890)
                      ..+||+|+|++|||||||+++|+++.     ..+.+|++.++.  ....  .+...++||||||++++     ..+...+
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   77 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRF--LGNMTLNLWDCGGQDVFMENYFTKQKDHI   77 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEE--TTTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEe--CCceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence            36899999999999999999999862     245667776653  2221  12458999999999887     3444444


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                          ++  ++|++|+|||++++.++ +++..|.+.+.+....                           ..++|+++|||
T Consensus        78 ----~~--~ad~vi~V~D~t~~~s~-~~l~~~~~~l~~l~~~---------------------------~~~~piilv~N  123 (307)
T 3r7w_A           78 ----FQ--MVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKY---------------------------SPDAKIFVLLH  123 (307)
T ss_dssp             ----HT--TCSEEEEEEETTCSCHH-HHHHHHHHHHHHHHHH---------------------------CTTCEEEEEEE
T ss_pred             ----hc--cCCEEEEEEECCChhhH-HHHHHHHHHHHHHHHh---------------------------CCCCeEEEEEe
Confidence                23  59999999999999998 8888887766554321                           12589999999


Q ss_pred             cccCCCCCCcchhh----hhHHHHHHHHHHcC---CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        184 KYDLFENLEPNKKR----IAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       184 K~Dl~~d~d~e~r~----~i~~~lr~la~~~G---a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+|+..   .+++.    +..+++++++..+|   +++++|||++ .++.+++..+.+.+
T Consensus       124 K~Dl~~---~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          124 KMDLVQ---LDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             CGGGSC---HHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             cccccc---hhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence            999962   22454    77788999999998   7899999999 67777665555443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.78  E-value=3.6e-18  Score=172.70  Aligned_cols=163  Identities=20%  Similarity=0.286  Sum_probs=124.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+|+|++|||||||+++|++..  ..+.|+++.++........ .....+.+||++|++.+..+...+    ++  
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~----~~--   76 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERYRRITSAY----YR--   76 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-TEEEEEEEEECSSGGGTTCCCHHH----HT--
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHH----Hh--
Confidence            36899999999999999999999963  3566888877643333221 112378999999998877766666    12  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|+|++++.++ +++..|+..+....                             ....|+++|+||+|+..  
T Consensus        77 ~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~i~~v~nK~Dl~~--  124 (199)
T 2f9l_A           77 GAVGALLVYDIAKHLTY-ENVERWLKELRDHA-----------------------------DSNIVIMLVGNKSDLRH--  124 (199)
T ss_dssp             TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCGG--
T ss_pred             cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCeEEEEEECccccc--
Confidence            48999999999999887 77778877654321                             12579999999999852  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         .+......++.++...++.+++|||+++.|++++++.|...+..
T Consensus       125 ---~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          125 ---LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             ---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ---ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence               34445567889999999999999999999999999999888754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=4.9e-19  Score=174.89  Aligned_cols=157  Identities=18%  Similarity=0.200  Sum_probs=109.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ..++|+|+|++|||||||+++|+++. ..+.+|++..+  .....   ....+.+||+||++++..+...+    ++  +
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   85 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSY---KNLKLNVWDLGGQTSIRPYWRCY----YA--D   85 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEE---TTEEEEEEEEC----CCTTGGGT----TT--T
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEE---CCEEEEEEECCCCHhHHHHHHHH----hc--c
Confidence            47899999999999999999999753 34557777442  12221   23589999999998887776666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|+|++++.++ +.+..|+..+.+.                            ....++|+++|+||+|+....+
T Consensus        86 ~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilv~nK~Dl~~~~~  136 (183)
T 1moz_A           86 TAAVIFVVDSTDKDRM-STASKELHLMLQE----------------------------EELQDAALLVFANKQDQPGALS  136 (183)
T ss_dssp             EEEEEEEEETTCTTTH-HHHHHHHHHHTTS----------------------------STTSSCEEEEEEECTTSTTCCC
T ss_pred             CCEEEEEEECCCHHHH-HHHHHHHHHHHcC----------------------------hhhCCCeEEEEEECCCCCCCCC
Confidence            9999999999999998 6677776543221                            1123689999999999953211


Q ss_pred             cchhhhhHHHHHHHH-----HHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLA-----HVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la-----~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                             ..++.+..     ...++++++|||+++.|++++++.|...+.
T Consensus       137 -------~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          137 -------ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             -------HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence                   11222221     123457999999999999999999988763

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.77  E-value=3.1e-18  Score=185.48  Aligned_cols=165  Identities=18%  Similarity=0.183  Sum_probs=125.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+++|++|||||||+++|+++.  ..+.+|++..+.  ...........+++||+||++.+..+...+    ++  
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~--  225 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTAGLEDYDRLRPLS----YP--  225 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE--EEEEETTEEEEEEEEEECCCGGGTTTGGGG----CT--
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE--EEEEECCEEEEEEEEeCCCchhhhHHHHHh----cc--
Confidence            35899999999999999999999753  456677775543  222112223378899999999888777766    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      ++|++|+|||++++.++ +.+. .|+..+.....                              ++|+++|+||+|+..+
T Consensus       226 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------------------~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          226 QTDVFLICFSLVSPASF-HHVRAKWYPEVRHHCP------------------------------NTPIILVGTKLDLRDD  274 (332)
T ss_dssp             TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT------------------------------TSCEEEEEECHHHHTC
T ss_pred             CCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhCC------------------------------CCcEEEEEEchhcccc
Confidence            59999999999999998 5555 68776654321                              5899999999998531


Q ss_pred             CCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ...       ..+.+..+++..++..+++ ++++|||++|.|++++++.|...++
T Consensus       275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            000       0145667788999999997 8999999999999999999988774

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.77  E-value=1.7e-19  Score=192.08  Aligned_cols=151  Identities=17%  Similarity=0.111  Sum_probs=108.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh----------HHhhh
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE----------VASLF  103 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~----------Li~~~  103 (890)
                      .+|+|+|++|||||||+|+|++...  ...|+++++........   .+..+.+|||||++++..          +...+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~---~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLL---GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEE---TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEE---CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            4799999999999999999999632  23477887754333222   223799999999987753          33333


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                          +...++|++|+|+|.+++++. ..+..|+                                   ...++|+++|+|
T Consensus        79 ----~~~~~~d~vi~VvDas~~~~~-~~l~~~l-----------------------------------~~~~~pvilv~N  118 (256)
T 3iby_A           79 ----VIDLEYDCIINVIDACHLERH-LYLTSQL-----------------------------------FELGKPVVVALN  118 (256)
T ss_dssp             ----HHHSCCSEEEEEEEGGGHHHH-HHHHHHH-----------------------------------TTSCSCEEEEEE
T ss_pred             ----HhhCCCCEEEEEeeCCCchhH-HHHHHHH-----------------------------------HHcCCCEEEEEE
Confidence                100259999999999996553 1222111                                   123789999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      |+|+..      ..........++..+|+++++|||++|.|++++++.|...
T Consensus       119 K~Dl~~------~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          119 MMDIAE------HRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CHHHHH------HTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             ChhcCC------cCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            999852      2223334667888899999999999999999999988765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.76  E-value=9.9e-18  Score=170.69  Aligned_cols=164  Identities=15%  Similarity=0.110  Sum_probs=104.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~  111 (890)
                      ..+||+|+|++|||||||+++|+++.. ...++++.++.  ...........++||||||++++.. +...+    ++  
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~----~~--   77 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRF----KS--   77 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHH----GG--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHH----Hh--
Confidence            468999999999999999999998642 22245554543  2222211134899999999998877 66666    22  


Q ss_pred             cCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        112 SGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      +++++|+|+|+++.. ++......|.+.+....                           ....++|++||+||+|+...
T Consensus        78 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B           78 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSM---------------------------ALKNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH---------------------------TSTTCCEEEEEEECTTSTTC
T ss_pred             hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhh---------------------------hcccCCCEEEEEECCCCCCc
Confidence            499999999999854 33223333443332211                           11236899999999999642


Q ss_pred             CCcchhhhhHHHHHHHHH---------------------------------Hc--CCeEEEEeccCC------CCHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAH---------------------------------VN--GASLLFHSSLDP------GLVKRTR  229 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~---------------------------------~~--Ga~l~etSAK~~------~nId~Lk  229 (890)
                      ..   ...+.+.+.+...                                 .+  ++.+++|||++|      .|+++++
T Consensus       131 ~~---~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf  207 (214)
T 2fh5_B          131 KS---AKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLE  207 (214)
T ss_dssp             CC---HHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHH
T ss_pred             cc---HHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHH
Confidence            21   1111222221111                                 11  677999999999      9999999


Q ss_pred             HHHHHH
Q psy11649        230 DILNHY  235 (890)
Q Consensus       230 ~~I~~~  235 (890)
                      ++|...
T Consensus       208 ~~l~~~  213 (214)
T 2fh5_B          208 KWLAKI  213 (214)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.63  E-value=3.3e-20  Score=187.87  Aligned_cols=165  Identities=19%  Similarity=0.186  Sum_probs=121.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.+|++..+..  ..........+++||+||++++..+...+    ++ 
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~----~~-  100 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA--NVMVDGKPVNLGLWDTAGQEDYDRLRPLS----YP-  100 (204)
Confidence            457899999999999999999999753  3455666644321  11111122378899999999888777766    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHH-HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                       ++|++|+|||++++.++ +.+. .|+..+....                              .++|+++|+||+|+..
T Consensus       101 -~~d~iilv~D~~~~~s~-~~~~~~~~~~l~~~~------------------------------~~~piilv~NK~Dl~~  148 (204)
T 3th5_A          101 -QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLRD  148 (204)
Confidence             59999999999999998 5554 7776554321                              1589999999999963


Q ss_pred             CCCc-------chhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        190 NLEP-------NKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       190 d~d~-------e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +...       ..+.+..++++.++..+++ ++++|||++|.|++++++.|...+
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            2110       0124556778888999998 899999999999999998887654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.76  E-value=8.4e-18  Score=169.57  Aligned_cols=161  Identities=21%  Similarity=0.288  Sum_probs=124.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..++|+|+|++|||||||+++|++..  ..+.+|++.++........ .....+++||++|++++..++..+    ++  
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~----~~--  100 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGLERYRAITSAY----YR--  100 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-TEEEEEEEEEECSCCSSSCCCHHH----HT--
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCCCcchhhhhHHH----hh--
Confidence            46899999999999999999999863  4567888887653333221 112367889999998877766665    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|+|+++..++ +++..|+..+.+..                             ....|+++|+||+|+..  
T Consensus       101 ~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~i~~v~nK~Dl~~--  148 (191)
T 1oix_A          101 GAVGALLVYDIAKHLTY-ENVERWLKELRDHA-----------------------------DSNIVIMLVGNKSDLRH--  148 (191)
T ss_dssp             TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGG--
T ss_pred             cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhc-----------------------------CCCCcEEEEEECccccc--
Confidence            47899999999999887 77778887654421                             12579999999999842  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .+......++.++...++.+++|||+++.|++++++.|...+
T Consensus       149 ---~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          149 ---LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             ---GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ---ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence               344456678899999999999999999999999999988765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=184.97  Aligned_cols=170  Identities=15%  Similarity=0.118  Sum_probs=116.3

Q ss_pred             CCccceEEEEEcCC---------CCCHHHHHHHHHcC-----CCCCCCCc-cceeEEEEE----------Ee---ccccc
Q psy11649         31 IQSQERTLLLIGTK---------SVGKSTLVFRFLEK-----NDTPKPTL-ALEYIYARK----------SG---KTVMK   82 (890)
Q Consensus        31 ~~~~e~kIvLVGd~---------nvGKSSLInrL~~~-----~~~~kpti-gvdY~f~~~----------~g---~~~~k   82 (890)
                      .....+||+|+|++         |||||||+++|+++     ...+.+|+ +++|.....          .+   .....
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            35567999999999         99999999999983     23455665 555421100          00   11122


Q ss_pred             eEEEEEE-----------------------cCCCcchhhHHhhh-h-ccccc-------------cccCcEEEEEEeCCC
Q psy11649         83 DICHLWE-----------------------LGSGTSRLEVASLF-S-SFSLT-------------AQSGFTLVLMLDLSR  124 (890)
Q Consensus        83 ~~l~IwD-----------------------lpG~~~~~~Li~~~-r-~~~~~-------------~~~ad~IIIV~DlSn  124 (890)
                      ..++|||                       ++|++++..+...+ + .+..-             ..++|++|+|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            3799999                       55555555444444 2 00000             004899999999999


Q ss_pred             c--CchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHH
Q psy11649        125 L--NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC  202 (890)
Q Consensus       125 p--~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~  202 (890)
                      +  .+| +.+..|+..+.+....                            .++|++||+||+|+.     +.+.+  .+
T Consensus       175 ~~~~s~-~~~~~~l~~i~~~~~~----------------------------~~~piilV~NK~Dl~-----~~~~v--~~  218 (255)
T 3c5h_A          175 GMNRNF-DDQLKFVSNLYNQLAK----------------------------TKKPIVVVLTKCDEG-----VERYI--RD  218 (255)
T ss_dssp             ----CH-HHHHHHHHHHHHHHHH----------------------------TTCCEEEEEECGGGB-----CHHHH--HH
T ss_pred             CchhhH-HHHHHHHHHHHHHhcc----------------------------CCCCEEEEEEccccc-----ccHHH--HH
Confidence            8  898 8889999887765221                            158999999999984     23443  57


Q ss_pred             HHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        203 LRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       203 lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++.++.. .++++++|||+++.|++++++.|...+
T Consensus       219 ~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          219 AHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             HHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            7888877 489999999999999999999987765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.76  E-value=2.7e-18  Score=183.02  Aligned_cols=153  Identities=18%  Similarity=0.093  Sum_probs=112.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh------HHhhh-h
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE------VASLF-S  104 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~------Li~~~-r  104 (890)
                      ..++|+|+|++|||||||+|+|++...  ...|+++++........   ....+.+|||||++++..      +...+ .
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTY---KGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---TTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEE---CCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            468999999999999999999998532  23367776643222222   234899999999987743      33344 2


Q ss_pred             ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649        105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK  184 (890)
Q Consensus       105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK  184 (890)
                      .     .++|++|+|+|.+++++.    ..|...+.                                ..++|+++|+||
T Consensus        81 ~-----~~~d~ii~V~D~t~~~~~----~~~~~~l~--------------------------------~~~~pvilv~NK  119 (258)
T 3a1s_A           81 K-----GDADLVILVADSVNPEQS----LYLLLEIL--------------------------------EMEKKVILAMTA  119 (258)
T ss_dssp             H-----SCCSEEEEEEETTSCHHH----HHHHHHHH--------------------------------TTTCCEEEEEEC
T ss_pred             h-----cCCCEEEEEeCCCchhhH----HHHHHHHH--------------------------------hcCCCEEEEEEC
Confidence            1     149999999999997653    23443322                                126899999999


Q ss_pred             ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+.      ....+..+..+++..+|+++++|||++|.|++++++.|.+.+
T Consensus       120 ~Dl~------~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A          120 IDEA------KKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             HHHH------HHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCC------CccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence            9985      222222357889999999999999999999999999998875

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.75  E-value=8.6e-18  Score=192.88  Aligned_cols=152  Identities=17%  Similarity=0.140  Sum_probs=89.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCC--------CcchhhHH
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGS--------GTSRLEVA  100 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG--------~~~~~~Li  100 (890)
                      .+...+|+|+|.+|||||||+|+|+++..   ...++++.+..+...  . .....+.||||||        +..+....
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~--~-~~~~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--E-WLNYDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEEC--T-TCSSCCEEECCCC------CCHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEE--E-ECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence            45567999999999999999999998532   222444444222111  1 1223799999999        44444455


Q ss_pred             hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      ..+    +.  ++|++|+|+|.++.-+.   ...|+..   .+                            ...++|+++
T Consensus        97 ~~~----~~--~ad~il~VvD~~~~~~~---~d~~l~~---~l----------------------------~~~~~pvil  136 (456)
T 4dcu_A           97 EIA----MD--EADVIIFMVNGREGVTA---ADEEVAK---IL----------------------------YRTKKPVVL  136 (456)
T ss_dssp             HHH----HH--HCSEEEEEEESSSCSCH---HHHHHHH---HH----------------------------TTCCSCEEE
T ss_pred             Hhh----Hh--hCCEEEEEEeCCCCCCh---HHHHHHH---HH----------------------------HHcCCCEEE
Confidence            444    22  49999999998875552   2233221   11                            123689999


Q ss_pred             EeecccCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+||+|+..     .+.    ....+. .+|. ..+++||++|.|++++.+.+...+
T Consensus       137 V~NK~D~~~-----~~~----~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l  183 (456)
T 4dcu_A          137 AVNKLDNTE-----MRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHF  183 (456)
T ss_dssp             EEECC------------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred             EEECccchh-----hhh----hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhc
Confidence            999999852     110    111111 2232 467999999999999988886654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.75  E-value=1.5e-18  Score=170.34  Aligned_cols=159  Identities=10%  Similarity=-0.011  Sum_probs=106.2

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .....+|+|+|++|||||||+++|++...  .+.++++.++.......   .+..+.+|||||++++..+...+    +.
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~----~~   77 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV---NDKKITFLDTPGHEAFTTMRARG----AQ   77 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE---TTEEEEESCCCSSSSSSCSCCSS----CC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe---CCceEEEEECCCCHHHHHHHHHH----Hh
Confidence            34578999999999999999999998642  34456665543322221   22378999999998877665544    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ++|++|+|+|++++... ..+    +.+....                             ..++|+++|+||+|+..
T Consensus        78 --~~d~~i~v~d~~~~~~~-~~~----~~l~~~~-----------------------------~~~~p~ilv~nK~Dl~~  121 (178)
T 2lkc_A           78 --VTDIVILVVAADDGVMP-QTV----EAINHAK-----------------------------AANVPIIVAINKMDKPE  121 (178)
T ss_dssp             --CCCEEEEEEETTCCCCH-HHH----HHHHHHG-----------------------------GGSCCEEEEEETTTSSC
T ss_pred             --hCCEEEEEEECCCCCcH-HHH----HHHHHHH-----------------------------hCCCCEEEEEECccCCc
Confidence              58999999999986542 222    2222111                             12589999999999963


Q ss_pred             CCCcchhhhhHHHH---HHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCL---RYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~l---r~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .    ........+   ..++..++  +++++|||+++.|++++++.|...+.
T Consensus       122 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          122 A----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE  170 (178)
T ss_dssp             S----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             C----CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence            1    111111111   11222333  58999999999999999999988764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.75  E-value=4.9e-18  Score=168.71  Aligned_cols=156  Identities=16%  Similarity=0.097  Sum_probs=114.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF  103 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~  103 (890)
                      .+..++|+|+|++|||||||+++|++..  ....++++.++.......   ....+++|||||++.+.      .+...+
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY---NGEKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE---TTEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe---CCcEEEEEECCCcCccccccHHHHHHHHH
Confidence            4567899999999999999999999853  233466676644333222   23479999999998763      344444


Q ss_pred             -hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        104 -SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       104 -r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                       +.     .+++++++|+|.++.    +.+..|+..+.+                                .++|+++|+
T Consensus        81 ~~~-----~~~~~~i~v~d~~~~----~~~~~~~~~~~~--------------------------------~~~piilv~  119 (188)
T 2wjg_A           81 IIN-----EKPDLVVNIVDATAL----ERNLYLTLQLME--------------------------------MGANLLLAL  119 (188)
T ss_dssp             HHH-----HCCSEEEEEEEGGGH----HHHHHHHHHHHT--------------------------------TTCCEEEEE
T ss_pred             Hhc-----cCCCEEEEEecchhH----HHHHHHHHHHHh--------------------------------cCCCEEEEE
Confidence             21     138999999998863    455566654322                                258999999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ||+|+..     .+. ....++.++..+|+++++|||+++.|++++++.|...+.
T Consensus       120 nK~Dl~~-----~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~  168 (188)
T 2wjg_A          120 NKMDLAK-----SLG-IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK  168 (188)
T ss_dssp             ECHHHHH-----HTT-CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred             Ehhhccc-----ccc-chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence            9999852     222 224567888889999999999999999999999988874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.75  E-value=1.7e-17  Score=171.73  Aligned_cols=165  Identities=12%  Similarity=0.032  Sum_probs=107.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCC--CCCCccceeEEEEEEeccccceEEEEEEcCCCc------c----hhhHH
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDT--PKPTLALEYIYARKSGKTVMKDICHLWELGSGT------S----RLEVA  100 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~--~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~------~----~~~Li  100 (890)
                      ...++|+|+|++|||||||+++|+++...  ..+..+.++.+....   .....+.||||||+.      .    +..+.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFD---HKLNKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEE---ETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeee---cCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            45789999999999999999999986431  122223232211111   123479999999983      2    22222


Q ss_pred             hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      ..+     .  .+|++|+|+|++++.++  .+..|...+......                           ..++|+++
T Consensus       104 ~~~-----~--~~d~~i~v~d~~~~~s~--~~~~~~~~~~~l~~~---------------------------~~~~piil  147 (228)
T 2qu8_A          104 ALA-----H--INGVILFIIDISEQCGL--TIKEQINLFYSIKSV---------------------------FSNKSIVI  147 (228)
T ss_dssp             HHH-----T--SSEEEEEEEETTCTTSS--CHHHHHHHHHHHHTC---------------------------C-CCCEEE
T ss_pred             Hhh-----c--cccEEEEEEecccccCc--chHHHHHHHHHHHHh---------------------------hcCCcEEE
Confidence            111     1  37999999999999887  344443333221110                           12589999


Q ss_pred             EeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      |+||+|+.....  ........++.++...+  +.+++|||++|.|++++++.|...+..
T Consensus       148 v~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          148 GFNKIDKCNMDS--LSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             EEECGGGCC--C--CCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEeCcccCCchh--hHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence            999999963111  11122345777888888  899999999999999999999888743

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.74  E-value=9.7e-18  Score=166.29  Aligned_cols=154  Identities=14%  Similarity=0.150  Sum_probs=105.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFS  107 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~  107 (890)
                      ..+|+|+|++|||||||+++|++...   ...++++.++.......   .+..+++|||||+.++.......    ....
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI---DGMPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE---TTEEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE---CCeEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            47999999999999999999998532   33456666653322221   12368999999987542211110    0011


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      ++  ++|++++|+|++++.++ + ...|+..+.+..                             ..++|+++|+||+|+
T Consensus        81 ~~--~ad~~i~v~D~~~~~s~-~-~~~~~~~~~~~~-----------------------------~~~~p~ilv~NK~Dl  127 (172)
T 2gj8_A           81 IE--QADRVLFMVDGTTTDAV-D-PAEIWPEFIARL-----------------------------PAKLPITVVRNKADI  127 (172)
T ss_dssp             HH--TCSEEEEEEETTTCCCC-S-HHHHCHHHHHHS-----------------------------CTTCCEEEEEECHHH
T ss_pred             HH--hCCEEEEEEECCCCCCH-H-HHHHHHHHHHhc-----------------------------ccCCCEEEEEECccC
Confidence            22  59999999999999997 3 456766554421                             126899999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ...    ..        .++...++.+++|||+++.|++++++.|...+
T Consensus       128 ~~~----~~--------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          128 TGE----TL--------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             HCC----CC--------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             Ccc----hh--------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            421    00        11223467899999999999999999998775

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.73  E-value=8e-17  Score=160.02  Aligned_cols=160  Identities=12%  Similarity=0.096  Sum_probs=111.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCC----------CcchhhHH
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGS----------GTSRLEVA  100 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG----------~~~~~~Li  100 (890)
                      ....++|+|+|++|||||||+++|++.. ..+.++.+..+......  .  ...+.+|||||          +..+..+.
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--V--NSKYYFVDLPGYGYAKVSKKERMLWKRLV   95 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--E--TTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--E--CCcEEEEECCCCccccCChhhHHHHHHHH
Confidence            4567899999999999999999999864 33334444332211111  1  12588999999          55566666


Q ss_pred             hhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE
Q psy11649        101 SLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI  179 (890)
Q Consensus       101 ~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI  179 (890)
                      ..+ +..    ..++++++|+|.++..+.  ....+...+..                                .++|++
T Consensus        96 ~~~~~~~----~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~p~i  137 (195)
T 3pqc_A           96 EDYFKNR----WSLQMVFLLVDGRIPPQD--SDLMMVEWMKS--------------------------------LNIPFT  137 (195)
T ss_dssp             HHHHHHC----TTEEEEEEEEETTSCCCH--HHHHHHHHHHH--------------------------------TTCCEE
T ss_pred             HHHHhcC----cCceEEEEEecCCCCCCH--HHHHHHHHHHH--------------------------------cCCCEE
Confidence            666 320    136999999999987653  21222221111                                158999


Q ss_pred             EEeecccCCCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        180 LIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       180 VVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+||+|+..   .+.+....+.++.++..++ +++++|||+++.|++++++.|...+
T Consensus       138 ~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  192 (195)
T 3pqc_A          138 IVLTKMDKVK---MSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL  192 (195)
T ss_dssp             EEEECGGGSC---GGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEChhcCC---hHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence            9999999963   3356666677888888754 7899999999999999999998876

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.73  E-value=5.8e-18  Score=182.05  Aligned_cols=151  Identities=18%  Similarity=0.149  Sum_probs=110.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhh-hc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLF-SS  105 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~-r~  105 (890)
                      .++|+|+|++|||||||+|+|++..  ....|+++++..    .+.......+++|||||++++.      .+...+ +.
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~----~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERK----SGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCE----EEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEE----EEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            5799999999999999999999853  223366776632    2211113379999999999875      445555 21


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                           .++|++|+|+|+++.++    ...|...+.+                                .++|+++|+||+
T Consensus        79 -----~~~d~vi~V~D~t~~e~----~~~~~~~l~~--------------------------------~~~p~ilv~NK~  117 (272)
T 3b1v_A           79 -----QRADSILNVVDATNLER----NLYLTTQLIE--------------------------------TGIPVTIALNMI  117 (272)
T ss_dssp             -----TCCSEEEEEEEGGGHHH----HHHHHHHHHH--------------------------------TCSCEEEEEECH
T ss_pred             -----CCCCEEEEEecCCchHh----HHHHHHHHHh--------------------------------cCCCEEEEEECh
Confidence                 14999999999998644    2345543322                                268999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+..     .+ .+......++..+|+++++|||++|.|++++++.|...+
T Consensus       118 Dl~~-----~~-~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          118 DVLD-----GQ-GKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             HHHH-----HT-TCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             hhCC-----cC-CcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            9852     22 222456788899999999999999999999999987754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.73  E-value=4.8e-18  Score=186.84  Aligned_cols=158  Identities=13%  Similarity=0.063  Sum_probs=114.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh---HHhhhhcccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE---VASLFSSFSL  108 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~---Li~~~r~~~~  108 (890)
                      ||+++|+.|||||||++++.++..     .+.||+|+++..  . +   ...+++||||+|+++|..   +...|    |
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v-~---~~v~LqIWDTAGQErf~~~~l~~~~y----y   70 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F-S---TLIDLAVMELPGQLNYFEPSYDSERL----F   70 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E-C---SSSCEEEEECCSCSSSCCCSHHHHHH----H
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E-c---cEEEEEEEECCCchhccchhhhhhhh----c
Confidence            689999999999999999887522     357899988642  2 1   224799999999999864   35566    3


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +  +++++|+|||+++. .+ +.+..|.+.+.+....                           ..++|+++||||+|+.
T Consensus        71 r--~a~~~IlV~Ditd~-~~-~~~~~l~~~l~~~~~~---------------------------~~~ipillvgNK~DL~  119 (331)
T 3r7w_B           71 K--SVGALVYVIDSQDE-YI-NAITNLAMIIEYAYKV---------------------------NPSINIEVLIHKVDGL  119 (331)
T ss_dssp             T--TCSEEEEECCCSSC-TT-HHHHHHHHHHHHHHHH---------------------------CTTCEEEEECCCCCSS
T ss_pred             c--CCCEEEEEEECCch-HH-HHHHHHHHHHHHHhhc---------------------------CCCCcEEEEEECcccC
Confidence            3  59999999999998 33 5555554433322111                           1258999999999996


Q ss_pred             CCCC--cchhhhhHHHHHHHHHH----cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        189 ENLE--PNKKRIAVQCLRYLAHV----NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~d--~e~r~~i~~~lr~la~~----~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+..  ...|++..++.+++|..    +++.+++|||++ .|+.+.+..|.+.+
T Consensus       120 ~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          120 SEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             CSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred             chhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence            3100  00266777888888886    789999999998 58888877776655

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.73  E-value=6.3e-18  Score=186.26  Aligned_cols=163  Identities=15%  Similarity=0.158  Sum_probs=109.8

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .+.++|+|+|++|||||||+++|+++.. ...||++..+  .....   ....++||||||++.+..+...+    ++  
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~--~~~~~---~~~~l~i~Dt~G~~~~~~~~~~~----~~--  231 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHY----FQ--  231 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEE--EEEEE---TTEEEEEEECC-----CCSHHHH----HT--
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEE--EEEec---CcEEEEEEECCCCHhHHHHHHHH----hc--
Confidence            3557999999999999999999998643 2346666553  23322   23479999999999988887777    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++.++ +.+..|+..+...                            ....++|++||+||+|+....
T Consensus       232 ~ad~vilV~D~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~piilV~NK~Dl~~~~  282 (329)
T 3o47_A          232 NTQGLIFVVDSNDRERV-NEAREELMRMLAE----------------------------DELRDAVLLVFANKQDLPNAM  282 (329)
T ss_dssp             TEEEEEEEEETTCSSSH-HHHHHHHHHHHTC----------------------------GGGTTCEEEEEEECTTSTTCC
T ss_pred             cCCEEEEEEECCchHHH-HHHHHHHHHHHhh----------------------------hccCCCeEEEEEECccCCccc
Confidence            49999999999999998 6666665433221                            112368999999999996321


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +  ..++........+...++++++|||++|.|++++++.|...+.
T Consensus       283 ~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          283 N--AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             C--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             C--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence            1  1111111111112223567999999999999999999988763

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.73  E-value=1.4e-17  Score=165.03  Aligned_cols=153  Identities=15%  Similarity=0.188  Sum_probs=108.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCC-----------CcchhhHHhh
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGS-----------GTSRLEVASL  102 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG-----------~~~~~~Li~~  102 (890)
                      +||+|+|++|||||||+++|++...  .+.|+++.+...  ..  ..   .+.+|||||           ++.+..+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~--~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IE--WK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EE--ET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--Ee--cC---CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            5899999999999999999999643  445665544321  11  11   589999999           4555556555


Q ss_pred             hhcccccccc-CcEEEEEEeCCCcCchHHHHHHHHHH--------HHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649        103 FSSFSLTAQS-GFTLVLMLDLSRLNSLWTEAETFLAK--------FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus       103 ~r~~~~~~~~-ad~IIIV~DlSnp~S~~~~L~~wlq~--------I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      +    ++  + ++++++|+|+++..++.+.+..|...        +....                            ..
T Consensus        75 ~----~~--~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~  120 (190)
T 2cxx_A           75 F----IE--DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL----------------------------RE  120 (190)
T ss_dssp             H----HH--HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH----------------------------HH
T ss_pred             H----HH--hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH----------------------------Hh
Confidence            5    11  2 56677777777788873334777652        11111                            12


Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe-------EEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-------LLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~-------l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .++|+++|+||+|+..     .+   .+.+++++..+|++       +++|||++|.|++++++.|...+.
T Consensus       121 ~~~piilv~nK~Dl~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  183 (190)
T 2cxx_A          121 LDIPTIVAVNKLDKIK-----NV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  183 (190)
T ss_dssp             TTCCEEEEEECGGGCS-----CH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCceEEEeehHhccC-----cH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence            3689999999999952     22   45678888888874       799999999999999999988764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.73  E-value=2.7e-17  Score=158.41  Aligned_cols=148  Identities=18%  Similarity=0.116  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch-------hhHHhhhhc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR-------LEVASLFSS  105 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~-------~~Li~~~r~  105 (890)
                      +||+++|++|||||||+++|++...   ...++.+.++.......   .+..+.+||+||...+       ......+  
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~--   76 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET---DRGRFLLVDTGGLWSGDKWEKKIQEKVDRA--   76 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE---TTEEEEEEECGGGCSSSSCCHHHHHHHHHH--
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe---CCceEEEEECCCCCCccchHHHHHHHHHHH--
Confidence            5899999999999999999998642   23344444433222222   1237999999998763       2222222  


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                        ++  +++++|+|+|++++.+.  .-..+.+.+.+                                .++|+++|+||+
T Consensus        77 --~~--~~~~~i~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~p~ilv~nK~  118 (161)
T 2dyk_A           77 --LE--DAEVVLFAVDGRAELTQ--ADYEVAEYLRR--------------------------------KGKPVILVATKV  118 (161)
T ss_dssp             --TT--TCSEEEEEEESSSCCCH--HHHHHHHHHHH--------------------------------HTCCEEEEEECC
T ss_pred             --HH--hCCEEEEEEECCCcccH--hHHHHHHHHHh--------------------------------cCCCEEEEEECc
Confidence              22  59999999999997663  21222222211                                158999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+...     +    +.+++++ .+|+ ++++|||+++.|++++++.|...+
T Consensus       119 Dl~~~-----~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          119 DDPKH-----E----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CSGGG-----G----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ccccc-----h----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            99631     1    2334455 6777 799999999999999999887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.72  E-value=6.2e-17  Score=161.67  Aligned_cols=160  Identities=14%  Similarity=0.151  Sum_probs=101.6

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCC----------CcchhhH
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGS----------GTSRLEV   99 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG----------~~~~~~L   99 (890)
                      ....++|+|+|.+|||||||+++|+++.  ..+.++.+..+.......  .  ..+.+|||||          ++.+..+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N--DELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T--TTEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C--CcEEEEECCCCCccccCHHHHHHHHHH
Confidence            3457899999999999999999999864  233344332221111111  1  1599999999          6666666


Q ss_pred             Hhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649        100 ASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus       100 i~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      ...+ +..    ..++++++|+|++++.++ ..+ .+...+.+                                .++|+
T Consensus        96 ~~~~~~~~----~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~--------------------------------~~~p~  137 (195)
T 1svi_A           96 IETYITTR----EELKAVVQIVDLRHAPSN-DDV-QMYEFLKY--------------------------------YGIPV  137 (195)
T ss_dssp             HHHHHHHC----TTEEEEEEEEETTSCCCH-HHH-HHHHHHHH--------------------------------TTCCE
T ss_pred             HHHHHhhh----hcCCEEEEEEECCCCCCH-HHH-HHHHHHHH--------------------------------cCCCE
Confidence            6666 320    124899999999998886 222 12221111                                25899


Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHH-HHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+||+|+..   ........+.+++ ++...++.+++|||+++.|++++++.|...+
T Consensus       138 i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          138 IVIATKADKIP---KGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEEECGGGSC---GGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEECcccCC---hHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            99999999963   1112112233333 4434578999999999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.71  E-value=1.8e-17  Score=177.08  Aligned_cols=155  Identities=18%  Similarity=0.146  Sum_probs=112.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh------HHhhhhc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE------VASLFSS  105 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~------Li~~~r~  105 (890)
                      ..++|+|+|++|||||||+|+|++...  ...+++++++.......   .+..+.+|||||++++..      +...+  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~~~~~~~~~~--   76 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEY---REKEFLVVDLPGIYSLTAHSIDELIARNF--   76 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEE---TTEEEEEEECCCCSCCCSSCHHHHHHHHH--
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEE---CCceEEEEeCCCccccccCCHHHHHHHHh--
Confidence            468999999999999999999998642  34477777744322222   223699999999987754      44444  


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC-CcEEEEeec
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP-VPLILIGGK  184 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~-IPiIVVgNK  184 (890)
                        +...++|++|+|+|.++.++   ++..|.+ +.+                                .+ +|+++|+||
T Consensus        77 --~~~~~~d~vi~v~D~~~~~~---~~~~~~~-~~~--------------------------------~~~~p~ilv~NK  118 (271)
T 3k53_A           77 --ILDGNADVIVDIVDSTCLMR---NLFLTLE-LFE--------------------------------MEVKNIILVLNK  118 (271)
T ss_dssp             --HHTTCCSEEEEEEEGGGHHH---HHHHHHH-HHH--------------------------------TTCCSEEEEEEC
T ss_pred             --hhccCCcEEEEEecCCcchh---hHHHHHH-HHh--------------------------------cCCCCEEEEEEC
Confidence              10124999999999998633   3333332 211                                14 899999999


Q ss_pred             ccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        185 YDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       185 ~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +|+.      .+.........++..+|+++++|||++|.|++++++.|...+-
T Consensus       119 ~Dl~------~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~  165 (271)
T 3k53_A          119 FDLL------KKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE  165 (271)
T ss_dssp             HHHH------HHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             hhcC------cccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            9985      2222333477888899999999999999999999999988863

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=2.7e-17  Score=167.97  Aligned_cols=154  Identities=17%  Similarity=0.133  Sum_probs=104.8

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSF  106 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~  106 (890)
                      ....+|+|+|++|||||||+++|++...     .+.++++.+|          ....+++||+||++.+...+..+ +..
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            3468999999999999999999998642     2445555443          23379999999999988777777 321


Q ss_pred             ccccccCcEEEEEEeCC-CcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        107 SLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlS-np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      ..   .++++|+|+|++ ++.++ ..+..|+..+......                         ....++|+++|+||+
T Consensus        80 ~~---~~~~~i~v~D~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~  130 (218)
T 1nrj_B           80 AK---FVKGLIFMVDSTVDPKKL-TTTAEFLVDILSITES-------------------------SCENGIDILIACNKS  130 (218)
T ss_dssp             GG---GEEEEEEEEETTSCTTCC-HHHHHHHHHHHHHHHH-------------------------HSTTCCCEEEEEECT
T ss_pred             cc---cCCEEEEEEECCCChHHH-HHHHHHHHHHHhcccc-------------------------cccCCCCEEEEEEch
Confidence            11   279999999999 88888 7777787766543321                         012368999999999


Q ss_pred             cCCCCCC-cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCH
Q psy11649        186 DLFENLE-PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLV  225 (890)
Q Consensus       186 Dl~~d~d-~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nI  225 (890)
                      |+..... .+.++.+..++..++...++.++++||+++.+-
T Consensus       131 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~  171 (218)
T 1nrj_B          131 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEED  171 (218)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             HhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            9964222 112334466778888888899999999998763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.69  E-value=3.2e-17  Score=191.70  Aligned_cols=161  Identities=17%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEE----Ee--c-cccceEEEEEEcCCCcchhhHHhh
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARK----SG--K-TVMKDICHLWELGSGTSRLEVASL  102 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~----~g--~-~~~k~~l~IwDlpG~~~~~~Li~~  102 (890)
                      ....+||+|+|++|||||||+++|++..  ..+.+|+|.++.....    ..  . ......+.|||+||++.+..+...
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            4567999999999999999999999864  4667888877542110    11  1 111348999999999988887777


Q ss_pred             hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                      +    ++  +++++|+|+|+++.+    .+..|+..+.+...                              ++|++||+
T Consensus       118 ~----l~--~~d~ii~V~D~s~~~----~~~~~~~~l~~~~~------------------------------~~pvilV~  157 (535)
T 3dpu_A          118 F----MT--RSSVYMLLLDSRTDS----NKHYWLRHIEKYGG------------------------------KSPVIVVM  157 (535)
T ss_dssp             H----HH--SSEEEEEEECGGGGG----GHHHHHHHHHHHSS------------------------------SCCEEEEE
T ss_pred             H----cc--CCcEEEEEEeCCCch----hHHHHHHHHHHhCC------------------------------CCCEEEEE
Confidence            6    21  499999999998763    55778877765321                              48999999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ||+|+..     .+....+.++.++...++++++|||++|.|++++++.|...+.
T Consensus       158 NK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~  207 (535)
T 3dpu_A          158 NKIDENP-----SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL  207 (535)
T ss_dssp             CCTTTCT-----TCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHT
T ss_pred             ECCCccc-----ccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHh
Confidence            9999953     3444567788888889999999999999999999999998874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.69  E-value=3.5e-16  Score=159.98  Aligned_cols=162  Identities=14%  Similarity=0.174  Sum_probs=105.7

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCccceeEEEEEEeccccceEEEEEEcCCC----------cchh
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND----TPKPTLALEYIYARKSGKTVMKDICHLWELGSG----------TSRL   97 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~----------~~~~   97 (890)
                      .....+|+|+|.+|||||||+|+|+++..    ...++.+.+..+...  .......+.||||||.          +.+.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSV--GPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEE--SCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEe--cCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            34578999999999999999999998641    222333433322221  1122347999999994          3345


Q ss_pred             hHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         98 EVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        98 ~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      .+...+ +.  .  ..+|++|+|+|.++..+.  ....|++.+.+                                .++
T Consensus       104 ~~~~~~~~~--~--~~~d~vi~v~d~~~~~~~--~~~~~~~~l~~--------------------------------~~~  145 (223)
T 4dhe_A          104 QLLSSYLQT--R--PQLCGMILMMDARRPLTE--LDRRMIEWFAP--------------------------------TGK  145 (223)
T ss_dssp             HHHHHHHHH--C--TTEEEEEEEEETTSCCCH--HHHHHHHHHGG--------------------------------GCC
T ss_pred             HHHHHHHhc--C--cCcCEEEEEEeCCCCCCH--HHHHHHHHHHh--------------------------------cCC
Confidence            555555 22  1  137899999999986553  33344433221                                268


Q ss_pred             cEEEEeecccCCCCCCcchhhhhHHHHHH-HHHH------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        177 PLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHV------NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       177 PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~-la~~------~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+++|+||+|+..   ..........+++ +...      .++++++|||+++.|++++++.|...+
T Consensus       146 p~i~v~nK~Dl~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  209 (223)
T 4dhe_A          146 PIHSLLTKCDKLT---RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWL  209 (223)
T ss_dssp             CEEEEEECGGGSC---HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CEEEEEeccccCC---hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence            9999999999963   1111112222233 3332      567899999999999999999999887

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.68  E-value=8.3e-16  Score=167.76  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=116.7

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh----------
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----------   97 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----------   97 (890)
                      +.+..-.|+++|.+|||||||+|+|++...   ...++.+.+.......  .....++.+|||||+....          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~--~~~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKN--IPNEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEe--cCCCCeEEEEECcCCCccccchhHHHHHH
Confidence            455667899999999999999999999642   3344444332211111  1114489999999986543          


Q ss_pred             hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCc
Q psy11649         98 EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVP  177 (890)
Q Consensus        98 ~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IP  177 (890)
                      .....+    +.  ++|++++|+|+++..+. .....|++.+.+                                .++|
T Consensus        84 ~~~~~~----l~--~aD~il~VvD~~~~~~~-~~~~~~~~~l~~--------------------------------~~~p  124 (308)
T 3iev_A           84 EIAKQS----LE--EADVILFMIDATEGWRP-RDEEIYQNFIKP--------------------------------LNKP  124 (308)
T ss_dssp             HHHHHH----HH--HCSEEEEEEETTTBSCH-HHHHHHHHHTGG--------------------------------GCCC
T ss_pred             HHHHHH----hh--cCCEEEEEEeCCCCCCc-hhHHHHHHHHHh--------------------------------cCCC
Confidence            222222    22  59999999999999887 566666654322                                2689


Q ss_pred             EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        178 LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       178 iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +++|+||+|+..     .+......+..++..++  +.++++||++|.|++++++.|...+..
T Consensus       125 vilV~NK~Dl~~-----~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          125 VIVVINKIDKIG-----PAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             EEEEEECGGGSS-----SGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEEEEECccCCC-----CHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            999999999852     34455677888888886  789999999999999999999988743

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.67  E-value=2.6e-16  Score=179.60  Aligned_cols=185  Identities=14%  Similarity=0.102  Sum_probs=114.6

Q ss_pred             CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEec
Q psy11649          2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGK   78 (890)
Q Consensus         2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~   78 (890)
                      |.++|.+.+.+.+.+.....         .....++|+|+|.+|||||||+|+|++...   ...++++.+........ 
T Consensus       151 gv~~L~~~i~~~l~~~~~~~---------~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~-  220 (436)
T 2hjg_A          151 GLGDLLDAVAEHFKNIPETK---------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-  220 (436)
T ss_dssp             THHHHHHHHHHTGGGCCSSC---------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEE-
T ss_pred             ChHHHHHHHHHhcCcccccc---------ccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEE-
Confidence            45677888877765322100         123468999999999999999999998642   33466665543222211 


Q ss_pred             cccceEEEEEEcCCC----------cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhh
Q psy11649         79 TVMKDICHLWELGSG----------TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNES  148 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~----------~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~  148 (890)
                        .+..+.||||||+          +.+..+....   .++  ++|++|+|+|++++.++ .+ ..|...+.+       
T Consensus       221 --~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~--~ad~~llv~D~~~~~s~-~~-~~~~~~~~~-------  284 (436)
T 2hjg_A          221 --NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK---AID--RSEVVAVVLDGEEGIIE-QD-KRIAGYAHE-------  284 (436)
T ss_dssp             --TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH---HHH--HCSEEEEEEETTTCCCH-HH-HHHHHHHHH-------
T ss_pred             --CCeEEEEEECCCcCcCccccchHHHHHHHHHHH---HHH--hCCEEEEEEcCCcCCcH-HH-HHHHHHHHH-------
Confidence              2236999999997          3333332211   112  49999999999999887 33 345554322       


Q ss_pred             hhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649        149 VREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       149 ~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L  228 (890)
                                               .++|+++|+||+|+.........+...+..+.++...++++++|||++|.|++++
T Consensus       285 -------------------------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l  339 (436)
T 2hjg_A          285 -------------------------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTL  339 (436)
T ss_dssp             -------------------------TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGH
T ss_pred             -------------------------cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHH
Confidence                                     2689999999999963211000111122223333345789999999999999999


Q ss_pred             HHHHHHHHh
Q psy11649        229 RDILNHYAF  237 (890)
Q Consensus       229 k~~I~~~lf  237 (890)
                      ++.+...+.
T Consensus       340 ~~~i~~~~~  348 (436)
T 2hjg_A          340 MPAIIKASE  348 (436)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.64  E-value=9.6e-16  Score=175.86  Aligned_cols=180  Identities=14%  Similarity=0.097  Sum_probs=115.9

Q ss_pred             CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEec
Q psy11649          2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGK   78 (890)
Q Consensus         2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~   78 (890)
                      |.++|.+.+.+.+.......         ......+|+++|.+|||||||+|+|++..   ....++++.++....... 
T Consensus       171 gv~~L~~~i~~~l~~~~~~~---------~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~-  240 (456)
T 4dcu_A          171 GLGDLLDAVAEHFKNIPETK---------YNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTY-  240 (456)
T ss_dssp             THHHHHHHHHTTGGGSCSSC---------CCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEE-
T ss_pred             chHHHHHHHHhhcccccccc---------cccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEE-
Confidence            44567777766554322111         12346899999999999999999999753   233455565532222221 


Q ss_pred             cccceEEEEEEcCC----------CcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhh
Q psy11649         79 TVMKDICHLWELGS----------GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNES  148 (890)
Q Consensus        79 ~~~k~~l~IwDlpG----------~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~  148 (890)
                        .+..+.||||||          ++.+..+....   .++  .+|++|+|+|.++..+  +....|...+.+       
T Consensus       241 --~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~---~~~--~ad~~llviD~~~~~~--~~~~~~~~~~~~-------  304 (456)
T 4dcu_A          241 --NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK---AID--RSEVVAVVLDGEEGII--EQDKRIAGYAHE-------  304 (456)
T ss_dssp             --TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH---HHH--HCSEEEEEEETTTCCC--HHHHHHHHHHHH-------
T ss_pred             --CCceEEEEECCCCCcCcccchHHHHHHHHHHHH---HHh--hCCEEEEEEeCCCCcC--HHHHHHHHHHHH-------
Confidence              223799999999          56665554432   011  3899999999998766  344455544332       


Q ss_pred             hhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-----CCeEEEEeccCCC
Q psy11649        149 VREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-----GASLLFHSSLDPG  223 (890)
Q Consensus       149 ~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-----Ga~l~etSAK~~~  223 (890)
                                               .++|++||+||+|+..     .+....+++.+.+...     ++++++|||++|.
T Consensus       305 -------------------------~~~~~ilv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  354 (456)
T 4dcu_A          305 -------------------------AGKAVVIVVNKWDAVD-----KDESTMKEFEENIRDHFQFLDYAPILFMSALTKK  354 (456)
T ss_dssp             -------------------------TTCEEEEEEECGGGSC-----CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred             -------------------------cCCCEEEEEEChhcCC-----CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence                                     2689999999999963     2222233344444433     5899999999999


Q ss_pred             CHHHHHHHHHHHHh
Q psy11649        224 LVKRTRDILNHYAF  237 (890)
Q Consensus       224 nId~Lk~~I~~~lf  237 (890)
                      |++++++.|...+.
T Consensus       355 gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          355 RIHTLMPAIIKASE  368 (456)
T ss_dssp             TGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988763

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.60  E-value=4.2e-15  Score=171.66  Aligned_cols=158  Identities=16%  Similarity=0.147  Sum_probs=91.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF  106 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~  106 (890)
                      ..++|+|+|.+|||||||+|+|++.+   ....++++.++.......   .+..+.+|||||+..+...+..+    ...
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~---~g~~l~liDT~G~~~~~~~ve~~gi~~~~~  308 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH---DKTMFRLTDTAGLREAGEEIEHEGIRRSRM  308 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE---TTEEEEEEC--------------------C
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE---CCeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence            35789999999999999999999863   233466666643222221   23479999999998776555442    122


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .++  ++|++|+|+|.+++.++ +.+..+.+.+..                             +.  ++|+++|+||+|
T Consensus       309 ~~~--~aD~vl~VvD~s~~~s~-~~~~~~~~~l~~-----------------------------l~--~~piIvV~NK~D  354 (476)
T 3gee_A          309 KMA--EADLILYLLDLGTERLD-DELTEIRELKAA-----------------------------HP--AAKFLTVANKLD  354 (476)
T ss_dssp             CCS--SCSEEEEEEETTTCSSG-GGHHHHHHHHHH-----------------------------CT--TSEEEEEEECTT
T ss_pred             hcc--cCCEEEEEEECCCCcch-hhhHHHHHHHHh-----------------------------cC--CCCEEEEEECcC
Confidence            233  69999999999999886 333333322111                             11  589999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +..     ....   ..+.++.....++++|||+++.|++++++.|...+
T Consensus       355 l~~-----~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          355 RAA-----NADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             SCT-----TTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             CCC-----ccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence            963     2221   11344444337899999999999999999998876

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.59  E-value=9.5e-15  Score=159.15  Aligned_cols=158  Identities=19%  Similarity=0.217  Sum_probs=100.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF  106 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~  106 (890)
                      +..+|+|+|.+|||||||+|+|++...   ...|+.+.+......   ...+.++.+|||||.......+..+    ...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~---~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGIL---TEGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEE---EETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEE---EeCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            456799999999999999999999643   234444433211111   1224489999999987632211111    111


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHH-HHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFL-AKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wl-q~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      .++  ++|++++|+|++++.+.   ...|+ +.+++.                              ..++|+++|+||+
T Consensus        83 ~l~--~ad~il~VvD~~~~~~~---~~~~i~~~l~~~------------------------------~~~~p~ilV~NK~  127 (301)
T 1wf3_A           83 ALA--DVNAVVWVVDLRHPPTP---EDELVARALKPL------------------------------VGKVPILLVGNKL  127 (301)
T ss_dssp             HTS--SCSEEEEEEETTSCCCH---HHHHHHHHHGGG------------------------------TTTSCEEEEEECG
T ss_pred             HHh--cCCEEEEEEECCCCCCh---HHHHHHHHHHhh------------------------------cCCCCEEEEEECc
Confidence            133  69999999999998664   23333 222110                              0258999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+..     .+......++.+  ...+.++++||++|.|++++++.|...+
T Consensus       128 Dl~~-----~~~~~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          128 DAAK-----YPEEAMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             GGCS-----SHHHHHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             ccCC-----chHHHHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            9852     111022333333  1135799999999999999999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.57  E-value=5.3e-14  Score=156.36  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=109.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh---------hHHhh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL---------EVASL  102 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~---------~Li~~  102 (890)
                      ...+|+++|.+|||||||+|+|++...  ...+..+.+........   ....+.+|||||.....         .....
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFED---GYFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEE---TTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEe---cCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            467999999999999999999998642  11123333322211111   23479999999985421         11111


Q ss_pred             hhccccccccCcEEEEEEeCCCcC--chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        103 FSSFSLTAQSGFTLVLMLDLSRLN--SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       103 ~r~~~~~~~~ad~IIIV~DlSnp~--S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      +   ..   .+|++++|+|++++.  ++ +....|+..+.+...                              ++|+++
T Consensus       243 ~---~~---~ad~illV~D~s~~~~~~~-~~~~~~~~~i~~~~~------------------------------~~piil  285 (357)
T 2e87_A          243 L---RY---LGNLIIYIFDPSEHCGFPL-EEQIHLFEEVHGEFK------------------------------DLPFLV  285 (357)
T ss_dssp             G---GG---TCSEEEEEECTTCTTSSCH-HHHHHHHHHHHHHTT------------------------------TSCEEE
T ss_pred             H---Hh---cCCEEEEEEeCCccccCCH-HHHHHHHHHHHHhcC------------------------------CCCEEE
Confidence            1   11   389999999999987  55 566677766554221                              589999


Q ss_pred             EeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      |+||+|+..     ...  ...+..++...++++++|||++|.|++++++.|...+.
T Consensus       286 V~NK~Dl~~-----~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~  335 (357)
T 2e87_A          286 VINKIDVAD-----EEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR  335 (357)
T ss_dssp             EECCTTTCC-----HHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEECcccCC-----hHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence            999999852     222  24456677778899999999999999999999988874

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.55  E-value=3.8e-14  Score=161.87  Aligned_cols=191  Identities=16%  Similarity=0.141  Sum_probs=109.4

Q ss_pred             CcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEec
Q psy11649          2 GPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGK   78 (890)
Q Consensus         2 ~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~   78 (890)
                      |.++|.+.+.+.+.+........     ......++|+|+|++|||||||+|+|++...   ...++++.+........ 
T Consensus       152 gv~~L~~~i~~~l~~~~~~~~~~-----~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-  225 (439)
T 1mky_A          152 NLDTMLETIIKKLEEKGLDLESK-----PEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-  225 (439)
T ss_dssp             SHHHHHHHHHHHHHHTTCCSSSC-----CCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-
T ss_pred             CHHHHHHHHHHhcccccccchhc-----cccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-
Confidence            45677888877765332110000     0122468999999999999999999998642   33456655532222221 


Q ss_pred             cccceEEEEEEcCCCcchhhHH----hhh---h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh
Q psy11649         79 TVMKDICHLWELGSGTSRLEVA----SLF---S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR  150 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~Li----~~~---r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~  150 (890)
                        .+..+.+|||+|..+...+.    ..+   + ...++  .++++++|+|+++..+. .. ..+..    .+.      
T Consensus       226 --~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~--~ad~vllv~d~~~~~~~-~~-~~i~~----~l~------  289 (439)
T 1mky_A          226 --DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE--KADVVVIVLDATQGITR-QD-QRMAG----LME------  289 (439)
T ss_dssp             --TTEEEEESSCSCC-----------CCSCCHHHHHHHH--HCSEEEEEEETTTCCCH-HH-HHHHH----HHH------
T ss_pred             --CCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHh--hCCEEEEEEeCCCCCCH-HH-HHHHH----HHH------
Confidence              12368999999985543322    111   1 11122  48999999999987775 22 11211    111      


Q ss_pred             hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649        151 EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRD  230 (890)
Q Consensus       151 ~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~  230 (890)
                                            ..+.|+++|+||+|+.+.......+......+.++...++++++|||++|.|++++++
T Consensus       290 ----------------------~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~  347 (439)
T 1mky_A          290 ----------------------RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID  347 (439)
T ss_dssp             ----------------------HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred             ----------------------HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence                                  1368999999999986310000011111112333334468899999999999999999


Q ss_pred             HHHHHH
Q psy11649        231 ILNHYA  236 (890)
Q Consensus       231 ~I~~~l  236 (890)
                      .|...+
T Consensus       348 ~i~~~~  353 (439)
T 1mky_A          348 AMNLAY  353 (439)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.54  E-value=1.9e-13  Score=154.48  Aligned_cols=159  Identities=11%  Similarity=0.056  Sum_probs=107.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEe-------------------c----cccceEEEEEE
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSG-------------------K----TVMKDICHLWE   89 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g-------------------~----~~~k~~l~IwD   89 (890)
                      ...++|+++|.+|+|||||+++|++.....  .  ..|...+...                   .    ......+.+||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSK--K--LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCS--S--SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccc--c--cCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            357899999999999999999999843221  1  1111111100                   0    00114799999


Q ss_pred             cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      |||++.|......+    +.  ++|++|+|+|+++..++ .....|+..+....                          
T Consensus        82 tPGh~~~~~~~~~~----~~--~~D~~ilVvda~~~~~~-~qt~~~~~~~~~~~--------------------------  128 (403)
T 3sjy_A           82 APGHEVLMATMLSG----AA--LMDGAILVVAANEPFPQ-PQTREHFVALGIIG--------------------------  128 (403)
T ss_dssp             CCCCGGGHHHHHHH----HT--TCSEEEEEEETTSCSSC-HHHHHHHHHHHHHT--------------------------
T ss_pred             CCCcHHHHHHHHHH----Hh--hCCEEEEEEECCCCCCc-HHHHHHHHHHHHcC--------------------------
Confidence            99998886665555    11  49999999999998755 45566665433210                          


Q ss_pred             cccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        170 LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       170 li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           ..|+++|+||+|+..   .+......++++++...+   +++++++||++|.|+++|++.|...+
T Consensus       129 -----~~~iivviNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          129 -----VKNLIIVQNKVDVVS---KEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             -----CCCEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             -----CCCEEEEEECccccc---hHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence                 148999999999963   122222333444444433   56899999999999999999998875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.53  E-value=2.3e-14  Score=142.98  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=81.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSF  106 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~  106 (890)
                      ...++|+|+|++|||||||+++|++...     .+.++++.+|          ....+.+||+||+..+...+..+ +..
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            4578999999999999999999998642     2234444332          22368999999998886666555 221


Q ss_pred             ccccccCcEEEEEEeCC-CcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        107 SLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlS-np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      ..   .++++|+|+|++ ++.++ ..+..|+..+......                         ....++|+++|+||+
T Consensus       116 ~~---~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~-------------------------~~~~~~p~ilv~nK~  166 (193)
T 2ged_A          116 AK---FVKGLIFMVDSTVDPKKL-TTTAEFLVDILSITES-------------------------SCENGIDILIACNKS  166 (193)
T ss_dssp             GG---GEEEEEEEEETTCCHHHH-HHHHHHHHHHHHHHHH-------------------------HSTTCCCEEEEEECT
T ss_pred             cc---cCCEEEEEEECCCCchhH-HHHHHHHHHHHhhhhh-------------------------ccccCCCEEEEEEch
Confidence            11   279999999999 78887 6777777665543221                         012368999999999


Q ss_pred             cCCC
Q psy11649        186 DLFE  189 (890)
Q Consensus       186 Dl~~  189 (890)
                      |+..
T Consensus       167 Dl~~  170 (193)
T 2ged_A          167 ELFT  170 (193)
T ss_dssp             TSTT
T ss_pred             HhcC
Confidence            9963

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.52  E-value=1.3e-14  Score=167.67  Aligned_cols=154  Identities=14%  Similarity=0.145  Sum_probs=104.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCc-chhhHHhhh----hcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGT-SRLEVASLF----SSF  106 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~-~~~~Li~~~----r~~  106 (890)
                      .++|+|+|.+|||||||+|+|++.+   ....++++.++.......   .+..+.+|||||.. .+...+..+    ...
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~---~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI---RGILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE---TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec---CCeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            4799999999999999999999853   334466666643322222   23479999999987 543221110    001


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .++  ++|++|+|+|++++.++ +... +++    .+                              .++|+++|+||+|
T Consensus       320 ~~~--~aD~vl~VvD~s~~~s~-~~~~-il~----~l------------------------------~~~piivV~NK~D  361 (482)
T 1xzp_A          320 EIE--KADIVLFVLDASSPLDE-EDRK-ILE----RI------------------------------KNKRYLVVINKVD  361 (482)
T ss_dssp             HHH--HCSEEEEEEETTSCCCH-HHHH-HHH----HH------------------------------TTSSEEEEEEECS
T ss_pred             Hhh--cccEEEEEecCCCCCCH-HHHH-HHH----Hh------------------------------cCCCEEEEEECcc
Confidence            122  49999999999999886 3322 111    11                              1479999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +....       ...++++++. .++++++|||+++.|++++++.|...++
T Consensus       362 L~~~~-------~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          362 VVEKI-------NEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             SCCCC-------CHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             ccccc-------CHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            95311       1223344332 4578999999999999999999988763

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.52  E-value=1.9e-14  Score=159.60  Aligned_cols=157  Identities=15%  Similarity=0.060  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc----hhhHHhhh-hcccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----RLEVASLF-SSFSL  108 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----~~~Li~~~-r~~~~  108 (890)
                      +|+|+|.+|||||||+++|++...   ++ +..+++..+....  ......+.||||||...    +..+...+ +.  +
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~-~ftTl~p~~g~v~--~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~--i  234 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADY-HFTTLVPNLGMVE--TDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH--I  234 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESST-TSSCCCCCEEEEE--CSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH--H
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccC-CccccCceEEEEE--eCCCceEEEecCCCCcccccccchhHHHHHHH--H
Confidence            588999999999999999998531   22 2222222221222  11124799999999643    23344444 21  1


Q ss_pred             ccccCcEEEEEEeCCC---cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        109 TAQSGFTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSn---p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                        ..++++|+|+|+++   ..++ +.+..|.+++..+...                           ...+|++||+||+
T Consensus       235 --~~~d~ll~VvD~s~~~~~~~~-~~~~~~~~eL~~~~~~---------------------------l~~~p~ilV~NK~  284 (342)
T 1lnz_A          235 --ERTRVIVHVIDMSGLEGRDPY-DDYLTINQELSEYNLR---------------------------LTERPQIIVANKM  284 (342)
T ss_dssp             --HHCCEEEEEEESSCSSCCCHH-HHHHHHHHHHHHSCSS---------------------------TTTSCBCBEEECT
T ss_pred             --HhccEEEEEEECCcccccChH-HHHHHHHHHHHHhhhh---------------------------hcCCCEEEEEECc
Confidence              13899999999999   6666 7778888766553211                           1358999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      |+..     .+    +.+.+++..++  .++++|||+++.|++++++.|...+.
T Consensus       285 Dl~~-----~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          285 DMPE-----AA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE  329 (342)
T ss_dssp             TSTT-----HH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             cCCC-----CH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence            9852     22    34566777776  68999999999999999999998874

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.51  E-value=7.6e-14  Score=161.48  Aligned_cols=162  Identities=11%  Similarity=0.072  Sum_probs=108.6

Q ss_pred             cCCccceEEEEEcCCCCCHHHHHHHHHcCC---------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHH
Q psy11649         30 DIQSQERTLLLIGTKSVGKSTLVFRFLEKN---------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVA  100 (890)
Q Consensus        30 ~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li  100 (890)
                      ...+..++|+++|..++|||||+++|++..         ....++++++..|.....   .+..+.+|||||++.|....
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~i~iiDtPGh~~~~~~~   90 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL---ENYRITLVDAPGHADLIRAV   90 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE---TTEEEEECCCSSHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE---CCEEEEEEECCChHHHHHHH
Confidence            345678999999999999999999999854         122333443332222221   23479999999998775554


Q ss_pred             hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      ...    +.  ++|++|+|+|+++...-  ....++..+.                                ..++|+++
T Consensus        91 ~~~----~~--~aD~~ilVvda~~g~~~--qt~e~l~~~~--------------------------------~~~ip~Iv  130 (482)
T 1wb1_A           91 VSA----AD--IIDLALIVVDAKEGPKT--QTGEHMLILD--------------------------------HFNIPIIV  130 (482)
T ss_dssp             HHH----TT--SCCEEEEEEETTTCSCH--HHHHHHHHHH--------------------------------HTTCCBCE
T ss_pred             HHH----Hh--hCCEEEEEEecCCCccH--HHHHHHHHHH--------------------------------HcCCCEEE
Confidence            444    11  49999999999984331  1222222111                                13689999


Q ss_pred             EeecccCCCCCCcchhhhhHHHHHHHHHHc----CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        181 IGGKYDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~~----Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      |+||+|+..   .+..+.+.++++.++...    +++++++||++|.|+++|++.|...+.
T Consensus       131 viNK~Dl~~---~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          131 VITKSDNAG---TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EEECTTSSC---HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECCCccc---chhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            999999962   233455566777777666    578999999999999999999988763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.51  E-value=3.8e-13  Score=140.28  Aligned_cols=170  Identities=14%  Similarity=0.110  Sum_probs=100.8

Q ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHcCCC--CCCC--CccceeEEEEEEeccccceEEEEEEcCCCcch--------hh
Q psy11649         31 IQSQERTLLLIGTKSVGKSTLVFRFLEKND--TPKP--TLALEYIYARKSGKTVMKDICHLWELGSGTSR--------LE   98 (890)
Q Consensus        31 ~~~~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kp--tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--------~~   98 (890)
                      .....++|+|+|.+|||||||+|+|++...  ...+  +++.++.......   .+..+.||||||....        ..
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW---KETELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE---TTEEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe---CCceEEEEECCCccCCCCCHHHHHHH
Confidence            345679999999999999999999999643  2223  3444432212211   2347999999995431        22


Q ss_pred             HHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649         99 VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus        99 Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      +...+. ..+.  +++++|+|+|+++...   ....|+..+.+....-                           ...|+
T Consensus       102 ~~~~~~-~~~~--~~~~~l~v~d~~~~~~---~~~~~l~~~~~~~~~~---------------------------~~~~~  148 (239)
T 3lxx_A          102 IIRCIL-LTSP--GPHALLLVVPLGRYTE---EEHKATEKILKMFGER---------------------------ARSFM  148 (239)
T ss_dssp             HHHHHH-HTTT--CCSEEEEEEETTCCSS---HHHHHHHHHHHHHHHH---------------------------HGGGE
T ss_pred             HHHHHH-hcCC--CCcEEEEEeeCCCCCH---HHHHHHHHHHHHhhhh---------------------------ccceE
Confidence            333221 0122  5899999999987655   2344554444433220                           13599


Q ss_pred             EEEeecccCCCCCCcch-hhhhHHHHHHHHHHcCCeEEEEeccCC-----CCHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNK-KRIAVQCLRYLAHVNGASLLFHSSLDP-----GLVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~-r~~i~~~lr~la~~~Ga~l~etSAK~~-----~nId~Lk~~I~~~l  236 (890)
                      +||+||+|+..+.+-+. .......++.++..+|..++.++++.+     .++.+|.+.|...+
T Consensus       149 iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          149 ILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             EEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            99999999863211000 000124678888889988888887654     57888877777765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.50  E-value=3.3e-15  Score=170.05  Aligned_cols=158  Identities=14%  Similarity=0.160  Sum_probs=106.3

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh---hc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF---SS  105 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~---r~  105 (890)
                      ....++|+|+|..|+|||||+++|++...   ...++++.+..+.......  ...+++|||||+..+..+....   ..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP--IGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETT--TEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC--CCeEEEEECcCCCcccchhHHHHHHHH
Confidence            44578999999999999999999998642   3345555554443333221  2279999999997664432110   00


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      ..+.  ++|++|+|+|++. .   +....|++.+.+                                .++|+++|+||+
T Consensus       109 ~~l~--~aD~vllVvD~~~-~---~~~~~~l~~l~~--------------------------------~~~piIvV~NK~  150 (423)
T 3qq5_A          109 RVFY--RADCGILVTDSAP-T---PYEDDVVNLFKE--------------------------------MEIPFVVVVNKI  150 (423)
T ss_dssp             HHHT--SCSEEEEECSSSC-C---HHHHHHHHHHHH--------------------------------TTCCEEEECCCC
T ss_pred             HHHh--cCCEEEEEEeCCC-h---HHHHHHHHHHHh--------------------------------cCCCEEEEEeCc
Confidence            0122  4999999999932 2   344566665443                                158999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+...     +.  .+..+.++..+|++++++||++|.|++++++.|...+
T Consensus       151 Dl~~~-----~~--~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          151 DVLGE-----KA--EELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             TTTTC-----CC--THHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred             CCCCc-----cH--HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            99632     11  1456777788899999999999999999999999887

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.50  E-value=3.9e-14  Score=161.70  Aligned_cols=159  Identities=15%  Similarity=0.145  Sum_probs=106.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CC-------------------------------CCCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DT-------------------------------PKPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~-------------------------------~kptigvdY~f~~~~g~~~   80 (890)
                      ..++|+++|..++|||||+++|++..  ..                               ...+++++..+.....   
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~---   81 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET---   81 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC---
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec---
Confidence            36899999999999999999998631  10                               0233444433222221   


Q ss_pred             cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                      ....+.||||||+..|......+    +.  .+|++|+|+|+++ .+| +++..|....+++...               
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~----~~--~aD~~ilVvDa~~-gsf-e~~~~~~~qt~~~~~~---------------  138 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITG----AS--QADAAILVVSAKK-GEY-EAGMSVEGQTREHIIL---------------  138 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHT----SS--CCSEEEEEEECST-THH-HHHHSTTCHHHHHHHH---------------
T ss_pred             CCeEEEEEECCCcHHHHHHHHhh----hh--hcCEEEEEEECCC-Ccc-ccccccchHHHHHHHH---------------
Confidence            23379999999999887665555    22  5999999999999 666 6666666655555432               


Q ss_pred             ccccccccccccCCCC-cEEEEeecccCCCC-CCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649        161 TADEHRDKGLIRTFPV-PLILIGGKYDLFEN-LEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       161 ~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d-~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L  228 (890)
                                ....++ |+++|+||+|+... .+++....+..+++.++..+|     ++++++||++|.|+.++
T Consensus       139 ----------~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          139 ----------AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             ----------HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             ----------HHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence                      112345 58999999999632 222233556778888888877     67999999999999744

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.50  E-value=2.8e-13  Score=151.41  Aligned_cols=165  Identities=13%  Similarity=0.079  Sum_probs=101.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch--hhHHhhh--hccccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR--LEVASLF--SSFSLT  109 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~--~~Li~~~--r~~~~~  109 (890)
                      ..|+|+|.+|||||||+|+|++...  ...+..+.++........   +..+.+|||+|..+.  ..++..+  ..+.+.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~---g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~  256 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN---NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK  256 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEET---TEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC---CEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence            3599999999999999999998642  112333334322222211   236899999997321  2222222  111122


Q ss_pred             cccCcEEEEEEeCCCcCc-hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRLNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S-~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        .+|++++|+|++++.+ ..+.+..|.+.+.+.                             ...++|+++|+||+|+.
T Consensus       257 --~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-----------------------------~~~~~p~ilV~NK~Dl~  305 (364)
T 2qtf_A          257 --YSDALILVIDSTFSENLLIETLQSSFEILREI-----------------------------GVSGKPILVTLNKIDKI  305 (364)
T ss_dssp             --GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-----------------------------TCCSCCEEEEEECGGGC
T ss_pred             --hCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-----------------------------CcCCCCEEEEEECCCCC
Confidence              4999999999999862 224555555444331                             11258999999999986


Q ss_pred             CCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      ..   . .......+..++..+   +..+++|||+++.|++++++.|...+..
T Consensus       306 ~~---~-~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          306 NG---D-LYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             CS---C-HHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             Cc---h-HHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            31   1 111122344445555   2468999999999999999999988754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.49  E-value=1.9e-14  Score=165.54  Aligned_cols=153  Identities=16%  Similarity=0.180  Sum_probs=95.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSF  106 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~  106 (890)
                      ..++|+|+|.+|||||||+|+|++.+   ....++++.++......   ..+..+.+|||||...+...+...    ...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~---~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLV---VGGIPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEE---ETTEEEEECC--------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEE---ECCEEEEEEECCccccchhHHHHHHHHHHhh
Confidence            45789999999999999999999842   23346666553211111   123478999999987665554442    112


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .+.  ++|++++|+|.+++.+.  ....|++.+    .                              ..|+++|+||+|
T Consensus       300 ~~~--~aD~vl~VvD~s~~~~~--~~~~i~~~l----~------------------------------~~piivV~NK~D  341 (462)
T 3geh_A          300 AAN--TADLVLLTIDAATGWTT--GDQEIYEQV----K------------------------------HRPLILVMNKID  341 (462)
T ss_dssp             CCC--SCSEEEEEEETTTCSCH--HHHHHHHHH----T------------------------------TSCEEEEEECTT
T ss_pred             hhh--cCCEEEEEeccCCCCCH--HHHHHHHhc----c------------------------------CCcEEEEEECCC
Confidence            233  69999999999998885  333444322    1                              269999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +...     +...  .++.++  .+.++++|||+++.|++++++.|...+
T Consensus       342 l~~~-----~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          342 LVEK-----QLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             SSCG-----GGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CCcc-----hhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            9631     1111  111111  356899999999999999999999886

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.48  E-value=4.7e-13  Score=153.11  Aligned_cols=160  Identities=16%  Similarity=0.051  Sum_probs=105.2

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEec
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGK   78 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~   78 (890)
                      ....++|+++|.+|+|||||+++|+....                                 ...++++++..+..... 
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-   92 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-   92 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-
Confidence            34568999999999999999999965311                                 11245566544433322 


Q ss_pred             cccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCc---hHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649         79 TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS---LWTEAETFLAKFRAIFESNESVREKRGS  155 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S---~~~~L~~wlq~I~e~~~~ll~~~~~~~~  155 (890)
                        .+..+.||||||++.|.......    +.  ++|++|+|+|+++...   | +....+.+.+..              
T Consensus        93 --~~~~~~iiDTPGh~~f~~~~~~~----~~--~aD~~ilVVDa~~g~~e~~~-~~~~qt~e~l~~--------------  149 (439)
T 3j2k_7           93 --EKKHFTILDAPGHKSFVPNMIGG----AS--QADLAVLVISARKGEFETGF-EKGGQTREHAML--------------  149 (439)
T ss_pred             --CCeEEEEEECCChHHHHHHHHhh----Hh--hCCEEEEEEECCCCcccccc-CCCchHHHHHHH--------------
Confidence              22379999999998886655554    11  4999999999998642   1 000011111111              


Q ss_pred             cccccccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHcC------CeEEEEeccCCCCHHH
Q psy11649        156 FEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG------ASLLFHSSLDPGLVKR  227 (890)
Q Consensus       156 l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~G------a~l~etSAK~~~nId~  227 (890)
                                     ...+++| +++|+||+|+.. +.+.+....+..++..++..+|      ++++++||++|.|+++
T Consensus       150 ---------------~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~  214 (439)
T 3j2k_7          150 ---------------AKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE  214 (439)
T ss_pred             ---------------HHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccc
Confidence                           1123678 999999999852 2223344556667777777765      4699999999999999


Q ss_pred             HHH
Q psy11649        228 TRD  230 (890)
Q Consensus       228 Lk~  230 (890)
                      +.+
T Consensus       215 l~~  217 (439)
T 3j2k_7          215 QSD  217 (439)
T ss_pred             ccc
Confidence            654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.47  E-value=2.8e-13  Score=142.95  Aligned_cols=167  Identities=19%  Similarity=0.155  Sum_probs=99.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCC-ccceeEEEEEEeccccceEEEEEEcCCCcchh--------hH
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPT-LALEYIYARKSGKTVMKDICHLWELGSGTSRL--------EV   99 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kpt-igvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~--------~L   99 (890)
                      .....+|+|+|.+|||||||+|+|++..   ..+.++ ++.+........   .+..+.||||||...+.        .+
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW---GNREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE---TTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe---CCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            4457899999999999999999999854   223343 444432222221   23479999999976542        11


Q ss_pred             HhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEE
Q psy11649        100 ASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLI  179 (890)
Q Consensus       100 i~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiI  179 (890)
                      ...+ ...++  ++|++|+|+|+++...   ....+.+.+.+....                           ....|++
T Consensus        96 ~~~~-~~~~~--~~d~il~V~d~~~~~~---~~~~~~~~l~~~~~~---------------------------~~~~~~i  142 (260)
T 2xtp_A           96 QRCY-LLSAP--GPHVLLLVTQLGRYTS---QDQQAAQRVKEIFGE---------------------------DAMGHTI  142 (260)
T ss_dssp             HHHH-HHHTT--CCSEEEEEEETTCCCH---HHHHHHHHHHHHHCG---------------------------GGGGGEE
T ss_pred             HHHH-HhcCC--CCcEEEEEEeCCCCCH---HHHHHHHHHHHHhCc---------------------------hhhccEE
Confidence            2111 01123  5999999999997333   222233333332211                           0124566


Q ss_pred             EEee-cccCCCCCCcchhhhhH----HHHHHHHHHcCCeE-----EEEeccCCCCHHHHHHHHHHHHh
Q psy11649        180 LIGG-KYDLFENLEPNKKRIAV----QCLRYLAHVNGASL-----LFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       180 VVgN-K~Dl~~d~d~e~r~~i~----~~lr~la~~~Ga~l-----~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +|+| |+|+...   .....+.    ..++.++..++..+     +++||+++.|++++++.|...+.
T Consensus       143 ~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~  207 (260)
T 2xtp_A          143 VLFTHKEDLNGG---SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLM  207 (260)
T ss_dssp             EEEECGGGGTTC---CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcccccCCc---cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHH
Confidence            6555 9999521   1111111    33555666665432     78999999999999999988873

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.47  E-value=3e-13  Score=152.85  Aligned_cols=159  Identities=13%  Similarity=0.078  Sum_probs=108.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC---CC------CC----------CCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK---ND------TP----------KPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~---~~------~~----------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ...++|+++|.+|+|||||+++|++.   .+      .+          ..+++++..+.....   ....+.||||||+
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~~~iiDtpG~   85 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET---AKRHYSHVDCPGH   85 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC---SSCEEEEEECCCS
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc---CCeEEEEEECCCh
Confidence            34689999999999999999999872   11      00          123333332211111   2347999999999


Q ss_pred             cchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         94 TSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        94 ~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      +.|......+    +.  .+|++|+|+|.++....  ....|+..+..                                
T Consensus        86 ~~f~~~~~~~----~~--~aD~~ilVvda~~g~~~--qt~~~l~~~~~--------------------------------  125 (405)
T 2c78_A           86 ADYIKNMITG----AA--QMDGAILVVSAADGPMP--QTREHILLARQ--------------------------------  125 (405)
T ss_dssp             GGGHHHHHHH----HT--TCSSEEEEEETTTCCCH--HHHHHHHHHHH--------------------------------
T ss_pred             HHHHHHHHHH----HH--HCCEEEEEEECCCCCcH--HHHHHHHHHHH--------------------------------
Confidence            8876555444    11  49999999999987653  44445443321                                


Q ss_pred             CCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCC------------------HHHHH
Q psy11649        174 FPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL------------------VKRTR  229 (890)
Q Consensus       174 l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~n------------------Id~Lk  229 (890)
                      .++| +++|+||+|+..  +.+..+.+..+++.++..++     ++++++||++|.|                  ++.|.
T Consensus       126 ~~ip~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll  203 (405)
T 2c78_A          126 VGVPYIVVFMNKVDMVD--DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELL  203 (405)
T ss_dssp             TTCCCEEEEEECGGGCC--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHH
T ss_pred             cCCCEEEEEEECccccC--cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHH
Confidence            2688 899999999963  11222344556778888776     6799999999987                  77888


Q ss_pred             HHHHHHH
Q psy11649        230 DILNHYA  236 (890)
Q Consensus       230 ~~I~~~l  236 (890)
                      +.|...+
T Consensus       204 ~~l~~~l  210 (405)
T 2c78_A          204 DAIDEYI  210 (405)
T ss_dssp             HHHHHHS
T ss_pred             HHHHhhc
Confidence            8877765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.46  E-value=5.9e-13  Score=151.87  Aligned_cols=151  Identities=14%  Similarity=0.052  Sum_probs=100.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC--------------CCCC---------------------ccceeEEEEEEec
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDT--------------PKPT---------------------LALEYIYARKSGK   78 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~--------------~kpt---------------------igvdY~f~~~~g~   78 (890)
                      ..++|+++|..++|||||+++|++....              ..++                     ++++..+....  
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~--  100 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS--  100 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE--
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee--
Confidence            3589999999999999999999864210              0112                     12221111111  


Q ss_pred             cccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649         79 TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH  158 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~  158 (890)
                       .....+.||||||++.|......+    +.  .+|++|+|+|+++....  ....|+..+..                 
T Consensus       101 -~~~~~~~iiDtpGh~~f~~~~~~~----~~--~aD~~ilVvDa~~g~~~--qt~~~l~~~~~-----------------  154 (434)
T 1zun_B          101 -TAKRKFIIADTPGHEQYTRNMATG----AS--TCDLAIILVDARYGVQT--QTRRHSYIASL-----------------  154 (434)
T ss_dssp             -CSSEEEEEEECCCSGGGHHHHHHH----HT--TCSEEEEEEETTTCSCH--HHHHHHHHHHH-----------------
T ss_pred             -cCCceEEEEECCChHHHHHHHHHH----Hh--hCCEEEEEEECCCCCcH--HHHHHHHHHHH-----------------
Confidence             123479999999999886655544    12  49999999999997653  44444432211                 


Q ss_pred             ccccccccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649        159 FRTADEHRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       159 ~~~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L  228 (890)
                                     .++ |+++|+||+|+.. .+++....+..+++.++..+|     ++++++||++|.|++++
T Consensus       155 ---------------~~~~~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          155 ---------------LGIKHIVVAINKMDLNG-FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ---------------TTCCEEEEEEECTTTTT-SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ---------------cCCCeEEEEEEcCcCCc-ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence                           245 5999999999963 111222345677888888888     68999999999999873

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.45  E-value=3.7e-13  Score=143.94  Aligned_cols=165  Identities=13%  Similarity=0.084  Sum_probs=92.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC---CCC-------CCCccceeEEEEEEecc-ccceEEEEEEcCCCc-------
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTP-------KPTLALEYIYARKSGKT-VMKDICHLWELGSGT-------   94 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~-------kptigvdY~f~~~~g~~-~~k~~l~IwDlpG~~-------   94 (890)
                      ...++|+|+|.+|+|||||+|+|++..   ..+       .+|+++++.  ...... .....+.||||||..       
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~l~liDTpG~~d~~~~~~   83 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQS--KVLIKEGGVQLLLTIVDTPGFGDAVDNSN   83 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEE--EEEECC--CCEEEEEEECCCCSCCSCCTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEE--EEEEecCCeEEEEEEEECCCccccccchh
Confidence            347999999999999999999998742   232       567776643  222221 122389999999972       


Q ss_pred             chhhHH-------hhh-h------ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         95 SRLEVA-------SLF-S------SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        95 ~~~~Li-------~~~-r------~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                      .+..+.       ..+ +      ...+.-..+|++++++|.+...-. ..-..+++.+                     
T Consensus        84 ~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l---------------------  141 (274)
T 3t5d_A           84 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRL---------------------  141 (274)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHH---------------------
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHH---------------------
Confidence            233333       222 1      001111126789999977663221 1112222221                     


Q ss_pred             ccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        161 TADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       161 ~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                                 .. ++|+++|+||+|+..   .++.......+++.....++.++.+||+++.+++++.+.|...+
T Consensus       142 -----------~~-~~pvi~V~nK~D~~~---~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          142 -----------HE-KVNIIPLIAKADTLT---PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             -----------TT-TSCEEEEESSGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             -----------hc-cCCEEEEEeccCCCC---HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence                       11 589999999999862   22333344556666777899999999999999999988887764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.45  E-value=7.4e-13  Score=149.81  Aligned_cols=161  Identities=9%  Similarity=0.076  Sum_probs=96.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCC--CccceeEEEEEEec------------c--c----cceEEEEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKP--TLALEYIYARKSGK------------T--V----MKDICHLW   88 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kp--tigvdY~f~~~~g~------------~--~----~k~~l~Iw   88 (890)
                      ..++|+++|..++|||||+++|++..     ....+  |+.+.|........            .  .    ....+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            46899999999999999999999631     23334  45445443222110            0  0    01479999


Q ss_pred             EcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649         89 ELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK  168 (890)
Q Consensus        89 DlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~  168 (890)
                      |+||++.|.......    .  ..+|++|+|+|+++........ ..+..+..                           
T Consensus        87 DtPGh~~f~~~~~~~----~--~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~---------------------------  132 (408)
T 1s0u_A           87 DSPGHETLMATMLSG----A--SLMDGAILVIAANEPCPQPQTK-EHLMALEI---------------------------  132 (408)
T ss_dssp             ECSSHHHHHHHHHTT----C--SCCSEEEEEEETTSCSSCHHHH-HHHHHHHH---------------------------
T ss_pred             ECCCHHHHHHHHHHh----H--hhCCEEEEEEECCCCCCCchhH-HHHHHHHH---------------------------
Confidence            999987765433222    1  1489999999999754210122 22211110                           


Q ss_pred             ccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        169 GLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       169 ~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           ++ .|+++|+||+|+...   +......+++++++..+   +++++++||++|.|+++|++.|...+
T Consensus       133 -----l~~~~iivv~NK~Dl~~~---~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          133 -----LGIDKIIIVQNKIDLVDE---KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             -----TTCCCEEEEEECTTSSCT---TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             -----cCCCeEEEEEEccCCCCH---HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence                 12 379999999999632   11122345566666653   67899999999999999999998865

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.45  E-value=6.9e-13  Score=144.31  Aligned_cols=158  Identities=18%  Similarity=0.134  Sum_probs=104.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc-chhh-HHhhh---hc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT-SRLE-VASLF---SS  105 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~-~~~~-Li~~~---r~  105 (890)
                      +..+|+|+|.+|||||||+|+|++...   ...+..+.+......   .....++.+|||||.. .... +...+   ..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~---~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIH---TEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEE---EETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEE---EECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            345799999999999999999998632   233433322111111   1123479999999987 3322 21122   12


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      ..++  .+|++++|+|.++ -+   ....|+-   +.+                            ...+.|+++|+||+
T Consensus        84 ~~l~--~~D~vl~Vvd~~~-~~---~~~~~i~---~~l----------------------------~~~~~P~ilvlNK~  126 (301)
T 1ega_A           84 SSIG--DVELVIFVVEGTR-WT---PDDEMVL---NKL----------------------------REGKAPVILAVNKV  126 (301)
T ss_dssp             SCCC--CEEEEEEEEETTC-CC---HHHHHHH---HHH----------------------------HSSSSCEEEEEEST
T ss_pred             HHHh--cCCEEEEEEeCCC-CC---HHHHHHH---HHH----------------------------HhcCCCEEEEEECc
Confidence            2233  6899999999987 33   2223321   111                            11258999999999


Q ss_pred             cCCCCCCcchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        186 DLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       186 Dl~~d~d~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+..     .+......+..++..+|. .++++||+++.|++.+.+.|...+
T Consensus       127 D~~~-----~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          127 DNVQ-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             TTCC-----CHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ccCc-----cHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            9852     244455667778777786 699999999999999999988765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.44  E-value=5.8e-13  Score=155.70  Aligned_cols=112  Identities=15%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---------------C---------CCCCccceeEEEEEEeccccceEEEEEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------T---------PKPTLALEYIYARKSGKTVMKDICHLWE   89 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------~---------~kptigvdY~f~~~~g~~~~k~~l~IwD   89 (890)
                      ...+|+|+|.+|+|||||+++|+....               .         ...++++.........   .+..++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~~i~liD   88 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY---KDYLINLLD   88 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE---TTEEEEEEC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe---CCEEEEEEE
Confidence            357899999999999999999972100               0         0122222221111111   234799999


Q ss_pred             cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      |||+..|......+    ++  .+|++|+|+|.++..+. .....|.. +                              
T Consensus        89 TPG~~df~~~~~~~----l~--~aD~allVvDa~~g~~~-~t~~~~~~-~------------------------------  130 (528)
T 3tr5_A           89 TPGHADFTEDTYRT----LT--AVDSALMVIDAAKGVEP-RTIKLMEV-C------------------------------  130 (528)
T ss_dssp             CCCSTTCCHHHHHG----GG--GCSEEEEEEETTTCSCH-HHHHHHHH-H------------------------------
T ss_pred             CCCchhHHHHHHHH----HH--hCCEEEEEEeCCCCCCH-HHHHHHHH-H------------------------------
Confidence            99999887766655    22  49999999999998775 44444432 1                              


Q ss_pred             cccCCCCcEEEEeecccCC
Q psy11649        170 LIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       170 li~~l~IPiIVVgNK~Dl~  188 (890)
                        ...++|+++|+||+|+.
T Consensus       131 --~~~~iPiivviNK~Dl~  147 (528)
T 3tr5_A          131 --RLRHTPIMTFINKMDRD  147 (528)
T ss_dssp             --HTTTCCEEEEEECTTSC
T ss_pred             --HHcCCCEEEEEeCCCCc
Confidence              12368999999999985

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.43  E-value=6.7e-13  Score=153.47  Aligned_cols=155  Identities=14%  Similarity=0.049  Sum_probs=96.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---------------------------------CCCCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---------------------------------TPKPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---------------------------------~~kptigvdY~f~~~~g~~~   80 (890)
                      ..++|+++|.+|+|||||+++|++...                                 ...++++++..+.....   
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---  108 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST---  108 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC---
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec---
Confidence            468999999999999999999976311                                 11123343332222221   


Q ss_pred             cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHH--HHHHHHHHHHHhhhhhhhhhcccccc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA--ETFLAKFRAIFESNESVREKRGSFEH  158 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L--~~wlq~I~e~~~~ll~~~~~~~~l~~  158 (890)
                      .+..+.||||||++.|......+    +.  ++|++|+|+|+++..++ ..+  ..+..+......              
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~----~~--~aD~~llVvDa~~g~~~-~~~~~~~qt~e~~~~~~--------------  167 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMG----IS--QADMAILCVDCSTNAFE-SGFDLDGQTKEHMLLAS--------------  167 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHH----HT--TCSEEEEEEECCC-------CCCCHHHHHHHHHHH--------------
T ss_pred             CCceEEEEECCCcHHHHHHHHHh----hh--hCCEEEEEEECCCCccc-cccchhhhHHHHHHHHH--------------
Confidence            23489999999999887666665    12  49999999999997542 111  112221111111              


Q ss_pred             ccccccccccccccCCC-CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649        159 FRTADEHRDKGLIRTFP-VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR  227 (890)
Q Consensus       159 ~~~~~~~~d~~li~~l~-IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~  227 (890)
                                    .++ .|++||+||+|+.. .+.+....+...++.+...+|     ++++++||++|.|+++
T Consensus       168 --------------~~~~~~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          168 --------------SLGIHNLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             --------------HTTCCCEEEEEECGGGGT-TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             --------------HcCCCcEEEEEECcCccc-chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence                          123 35999999999863 112223334555666655554     5799999999999984

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.42  E-value=1.2e-12  Score=154.98  Aligned_cols=155  Identities=13%  Similarity=0.023  Sum_probs=102.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------CCCccceeEEEEEEec--cccceEEEEEEcCCCcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTP-----------------KPTLALEYIYARKSGK--TVMKDICHLWELGSGTS   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~-----------------kptigvdY~f~~~~g~--~~~k~~l~IwDlpG~~~   95 (890)
                      -.+|+|+|..++|||||+++|+...+..                 ..++++..........  ......++||||||+..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            5789999999999999999998621100                 1112221111111111  11234899999999998


Q ss_pred             hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCC
Q psy11649         96 RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFP  175 (890)
Q Consensus        96 ~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~  175 (890)
                      |...+..+    ++  .+|++|+|+|+++..+. .++..|.....                                 .+
T Consensus        84 F~~ev~~~----l~--~aD~aILVVDa~~gv~~-qt~~~~~~~~~---------------------------------~~  123 (599)
T 3cb4_D           84 FSYEVSRS----LA--ACEGALLVVDAGQGVEA-QTLANCYTAME---------------------------------MD  123 (599)
T ss_dssp             GHHHHHHH----HH--HCSEEEEEEETTTCCCT-HHHHHHHHHHH---------------------------------TT
T ss_pred             HHHHHHHH----HH--HCCEEEEEEECCCCCCH-HHHHHHHHHHH---------------------------------CC
Confidence            87766655    11  49999999999998776 66666664321                                 26


Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +|+++|+||+|+...     .  ......+++..++..   ++++||++|.|++++++.|...+
T Consensus       124 ipiIvViNKiDl~~a-----~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          124 LEVVPVLNKIDLPAA-----D--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             CEEEEEEECTTSTTC-----C--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             CCEEEeeeccCcccc-----c--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcC
Confidence            899999999999521     1  223455666677764   89999999999999999998876

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.42  E-value=5e-13  Score=150.77  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=105.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC---CC--C-------------CCCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK---ND--T-------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR   96 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~---~~--~-------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~   96 (890)
                      .++|+++|..++|||||+++|++.   .+  .             ...+++++..+....   .....+.||||||++.|
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~---~~~~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS---TAARHYAHTDCPGHADY   79 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE---CSSCEEEEEECSSHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec---cCCeEEEEEECCChHHH
Confidence            579999999999999999999873   10  0             012233332221111   12247999999999887


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ......+    +.  .+|++|+|+|+++.... ...+.| ..+.                                ..++
T Consensus        80 ~~~~~~~----~~--~aD~~ilVvda~~g~~~-qt~e~l-~~~~--------------------------------~~~v  119 (397)
T 1d2e_A           80 VKNMITG----TA--PLDGCILVVAANDGPMP-QTREHL-LLAR--------------------------------QIGV  119 (397)
T ss_dssp             HHHHHHT----SS--CCSEEEEEEETTTCSCH-HHHHHH-HHHH--------------------------------HTTC
T ss_pred             HHHHHhh----Hh--hCCEEEEEEECCCCCCH-HHHHHH-HHHH--------------------------------HcCC
Confidence            5554444    22  59999999999996553 222222 2221                                1268


Q ss_pred             c-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCC----------HHHHHHHHHHHH
Q psy11649        177 P-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL----------VKRTRDILNHYA  236 (890)
Q Consensus       177 P-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~n----------Id~Lk~~I~~~l  236 (890)
                      | +++|+||+|+..  +.+..+.+..++++++..++     ++++++||+++.|          +++|.+.|...+
T Consensus       120 p~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          120 EHVVVYVNKADAVQ--DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             CCEEEEEECGGGCS--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CeEEEEEECcccCC--CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            8 789999999963  11122345567788888776     5899999999775          888888887765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.41  E-value=2.3e-12  Score=145.74  Aligned_cols=162  Identities=12%  Similarity=0.081  Sum_probs=103.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-----CCCCC--CccceeEEEEEEec---------------cc---cceEEEEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-----DTPKP--TLALEYIYARKSGK---------------TV---MKDICHLW   88 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-----~~~kp--tigvdY~f~~~~g~---------------~~---~k~~l~Iw   88 (890)
                      ..++|+++|..++|||||+++|++..     ....+  |+.+.|........               ..   ....+.+|
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            46899999999999999999999631     22334  44444432222110               00   01479999


Q ss_pred             EcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649         89 ELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK  168 (890)
Q Consensus        89 DlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~  168 (890)
                      ||||++.|.......    .  ..+|++|+|+|+++........+ .+..+...  .                       
T Consensus        89 DtPGh~~f~~~~~~~----~--~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~--~-----------------------  136 (410)
T 1kk1_A           89 DAPGHEALMTTMLAG----A--SLMDGAILVIAANEPCPRPQTRE-HLMALQII--G-----------------------  136 (410)
T ss_dssp             ECSSHHHHHHHHHHC----G--GGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH--T-----------------------
T ss_pred             ECCChHHHHHHHHhh----h--hhCCEEEEEEECCCCCCChhHHH-HHHHHHHc--C-----------------------
Confidence            999987764433222    1  13899999999997531101222 22211110  0                       


Q ss_pred             ccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH---cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        169 GLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       169 ~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~---~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                            ..|+++|+||+|+..   .+......+++++++..   .+++++++||+++.|+++|+++|...+
T Consensus       137 ------~~~iivviNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          137 ------QKNIIIAQNKIELVD---KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             ------CCCEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ------CCcEEEEEECccCCC---HHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence                  147999999999963   11112233455566554   367899999999999999999998865

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.41  E-value=1.7e-12  Score=153.59  Aligned_cols=156  Identities=17%  Similarity=0.112  Sum_probs=104.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC---------C--------CCCccceeEEEEEE--eccccceEEEEEEcCCCc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDT---------P--------KPTLALEYIYARKS--GKTVMKDICHLWELGSGT   94 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~---------~--------kptigvdY~f~~~~--g~~~~k~~l~IwDlpG~~   94 (890)
                      .-.+|+++|..++|||||+++|+...+.         .        ..++++.-......  ........+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            3578999999999999999999762110         0        01111110000111  111122489999999999


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .|...+..+    ++  .+|++|+|+|+++..+. ..+..|.....                                 .
T Consensus        85 dF~~ev~r~----l~--~aD~aILVVDa~~gv~~-qt~~~~~~a~~---------------------------------~  124 (600)
T 2ywe_A           85 DFSYEVSRA----LA--ACEGALLLIDASQGIEA-QTVANFWKAVE---------------------------------Q  124 (600)
T ss_dssp             GGHHHHHHH----HH--TCSEEEEEEETTTBCCH-HHHHHHHHHHH---------------------------------T
T ss_pred             hHHHHHHHH----HH--hCCEEEEEEECCCCccH-HHHHHHHHHHH---------------------------------C
Confidence            886655555    12  49999999999998876 66666654221                                 2


Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCe---EEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS---LLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~---l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+++|+||+|+...     .  ......+++..+|..   ++++||++|.|++++++.|...+
T Consensus       125 ~ipiIvviNKiDl~~a-----~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          125 DLVIIPVINKIDLPSA-----D--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             TCEEEEEEECTTSTTC-----C--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeccCcccc-----C--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence            6899999999999521     1  223455677777763   89999999999999999998876

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.41  E-value=2.2e-12  Score=130.54  Aligned_cols=158  Identities=13%  Similarity=0.075  Sum_probs=98.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcc----------hhhHH
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS----------RLEVA  100 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~----------~~~Li  100 (890)
                      ....+|+|+|.+|||||||+++|++..  ..+.++.|..+........  .  .+.+||+||...          +....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA--D--GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE--T--TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec--C--CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            345789999999999999999999854  2223444433211111111  1  478999999742          22233


Q ss_pred             hhh-hccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649        101 SLF-SSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus       101 ~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      ..+ ..  ..  .++++++|+|++++.+..+ .+..|+.                                   ..++|+
T Consensus       100 ~~~~~~--~~--~~~~~~~v~d~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~  140 (210)
T 1pui_A          100 GEYLEK--RQ--SLQGLVVLMDIRHPLKDLDQQMIEWAV-----------------------------------DSNIAV  140 (210)
T ss_dssp             HHHHHH--CT--TEEEEEEEEETTSCCCHHHHHHHHHHH-----------------------------------HTTCCE
T ss_pred             HHHHHh--hh--cccEEEEEEECCCCCchhHHHHHHHHH-----------------------------------HcCCCe
Confidence            333 11  11  3789999999999876521 1222221                                   126899


Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+||+|+..   ..+++.....++.++...+  +.+++|||+++.|++++++.|...+
T Consensus       141 ~~v~nK~D~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          141 LVLLTKADKLA---SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             EEEEECGGGSC---HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEecccCCC---chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence            99999999862   2233333455666666654  5688999999999999999998876

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.39  E-value=2.7e-14  Score=166.83  Aligned_cols=157  Identities=13%  Similarity=0.033  Sum_probs=104.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      +..+|+++|.+|+|||||+++|++..  ....++++.++.+....  ......+.+|||||++.|..+...+    +.  
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~--~~~g~~i~~iDTPGhe~f~~~~~~~----~~--   74 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVS--LPSGEKITFLDTPGHAAFSAMRARG----TQ--   74 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBC--SSCSSCCBCEECSSSCCTTTSBBSS----SB--
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEE--eCCCCEEEEEECCChHHHHHHHHHH----Hc--
Confidence            35689999999999999999999742  23446666554322221  1122379999999998887776655    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      .+|++|+|+|+++.... ...+.|.    .                             ....++|+++|+||+|+....
T Consensus        75 ~aD~vILVVDa~dg~~~-qt~e~l~----~-----------------------------~~~~~vPiIVViNKiDl~~~~  120 (537)
T 3izy_P           75 VTDIVILVVAADDGVMK-QTVESIQ----H-----------------------------AKDAHVPIVLAINKCDKAEAD  120 (537)
T ss_dssp             SBSSCEEECBSSSCCCH-HHHHHHH----H-----------------------------HHTTTCCEEECCBSGGGTTTS
T ss_pred             cCCEEEEEEECCCCccH-HHHHHHH----H-----------------------------HHHcCCcEEEEEecccccccc
Confidence            59999999999996654 2222221    1                             112368999999999985311


Q ss_pred             CcchhhhhHHHHHHH---HHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYL---AHVN--GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~l---a~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       .+..   ...+..+   +..+  .++++++||++|.|+++|++.|...+
T Consensus       121 -~~~v---~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          121 -PEKV---KKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             -CCSS---SSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             -hHHH---HHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence             1111   1112111   2223  25799999999999999999998876

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.39  E-value=2e-12  Score=144.79  Aligned_cols=146  Identities=10%  Similarity=-0.007  Sum_probs=100.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTL  116 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~I  116 (890)
                      +|+++|.+++|||||+++|+.      .+++++..+.....   .+.+++||||||++.|.......    ++  .+|++
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~------~giTi~~~~~~~~~---~~~~i~iiDtPGh~~f~~~~~~~----~~--~aD~a   87 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGK------KGTSSDITMYNNDK---EGRNMVFVDAHSYPKTLKSLITA----LN--ISDIA   87 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSE------EEEESSSEEEEECS---SSSEEEEEECTTTTTCHHHHHHH----HH--TCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHh------CCEEEEeeEEEEec---CCeEEEEEECCChHHHHHHHHHH----HH--HCCEE
Confidence            899999999999999999983      33333333323222   22379999999998875443333    11  49999


Q ss_pred             EEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcE-EEEee-cccCCCCCCcc
Q psy11649        117 VLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL-ILIGG-KYDLFENLEPN  194 (890)
Q Consensus       117 IIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi-IVVgN-K~Dl~~d~d~e  194 (890)
                      |+|+| +....  .....|+..+..                                .++|. ++|+| |+|+ .   .+
T Consensus        88 ilVvd-~~g~~--~qt~e~~~~~~~--------------------------------~~i~~~ivvvNNK~Dl-~---~~  128 (370)
T 2elf_A           88 VLCIP-PQGLD--AHTGECIIALDL--------------------------------LGFKHGIIALTRSDST-H---MH  128 (370)
T ss_dssp             EEEEC-TTCCC--HHHHHHHHHHHH--------------------------------TTCCEEEEEECCGGGS-C---HH
T ss_pred             EEEEc-CCCCc--HHHHHHHHHHHH--------------------------------cCCCeEEEEEEeccCC-C---HH
Confidence            99999 65433  344455443221                                35787 88999 9998 3   11


Q ss_pred             hhhhhHHHHHHHHHHcC---CeEEE--EeccC---CCCHHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAHVNG---ASLLF--HSSLD---PGLVKRTRDILNHYA  236 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~G---a~l~e--tSAK~---~~nId~Lk~~I~~~l  236 (890)
                      ......+++++++..++   +++++  +||++   +.|+++|++.|...+
T Consensus       129 ~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          129 AIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA  178 (370)
T ss_dssp             HHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence            22223456667666654   68999  99999   999999999998876

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.38  E-value=4.7e-13  Score=154.26  Aligned_cols=157  Identities=16%  Similarity=0.053  Sum_probs=91.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEecc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKT   79 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~   79 (890)
                      ...++|+++|..++|||||+++|+......                                 ..+++++..+....   
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~---  117 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE---  117 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE---
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe---
Confidence            345899999999999999999997521100                                 11222222111111   


Q ss_pred             ccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---chHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649         80 VMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SLWTEAETFLAKFRAIFESNESVREKRGSF  156 (890)
Q Consensus        80 ~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l  156 (890)
                      ..+..+.||||||++.|.......    +.  .+|++|+|+|+++..   +| +....|.+.+...              
T Consensus       118 ~~~~~~~iiDtPGh~~f~~~~~~~----~~--~aD~~ilVvDa~~g~~e~sf-~~~~qt~e~l~~~--------------  176 (467)
T 1r5b_A          118 TEHRRFSLLDAPGHKGYVTNMING----AS--QADIGVLVISARRGEFEAGF-ERGGQTREHAVLA--------------  176 (467)
T ss_dssp             CSSEEEEECCCCC---------------TT--SCSEEEEEEECSTTHHHHTT-STTCCHHHHHHHH--------------
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhh----cc--cCCEEEEEEeCCcCcccccc-CCCCcHHHHHHHH--------------
Confidence            123479999999998875554444    12  599999999999852   22 1111222222111              


Q ss_pred             ccccccccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHc-C------CeEEEEeccCCCCHHH
Q psy11649        157 EHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVN-G------ASLLFHSSLDPGLVKR  227 (890)
Q Consensus       157 ~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~-G------a~l~etSAK~~~nId~  227 (890)
                                     ...++| ++||+||+|+.. +.+.+..+.+..+++.++..+ |      ++++++||++|.|+++
T Consensus       177 ---------------~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~  241 (467)
T 1r5b_A          177 ---------------RTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD  241 (467)
T ss_dssp             ---------------HHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred             ---------------HHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence                           113688 999999999852 222333455666777887776 4      5699999999999986


Q ss_pred             H
Q psy11649        228 T  228 (890)
Q Consensus       228 L  228 (890)
                      +
T Consensus       242 l  242 (467)
T 1r5b_A          242 R  242 (467)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.38  E-value=2.2e-12  Score=142.08  Aligned_cols=121  Identities=17%  Similarity=0.124  Sum_probs=85.3

Q ss_pred             ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCC-------CcCchHHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649         82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS-------RLNSLWTEAETFLAKFRAIFESNESVREKRG  154 (890)
Q Consensus        82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlS-------np~S~~~~L~~wlq~I~e~~~~ll~~~~~~~  154 (890)
                      ..+++|||++|+++++.++..|    |+  +++++|+|+|+|       +..+. +.+..|...+.+.+..         
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~y----f~--~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~---------  229 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHC----FE--NVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITY---------  229 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGG----CS--SCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTS---------
T ss_pred             ceeeEEEEcCCchhHHHHHHHH----hC--CCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhh---------
Confidence            3489999999999999999888    34  699999999776       32222 3344444433333321         


Q ss_pred             ccccccccccccccccccCCCCcEEEEeecccCCCCCCcchh----------------hhhHHHHHHHH----------H
Q psy11649        155 SFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK----------------RIAVQCLRYLA----------H  208 (890)
Q Consensus       155 ~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r----------------~~i~~~lr~la----------~  208 (890)
                                      ....++|++|+|||+|++.     ++                ....+++.+++          .
T Consensus       230 ----------------~~~~~~~iiL~~NK~DL~~-----~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~  288 (327)
T 3ohm_A          230 ----------------PWFQNSSVILFLNKKDLLE-----EKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS  288 (327)
T ss_dssp             ----------------GGGTTCEEEEEEECHHHHH-----HHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred             ----------------hccCCceEEEEEECchhhh-----hhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence                            1112589999999999863     22                23445566553          3


Q ss_pred             HcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        209 VNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       209 ~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                      ..++.+++|||+++.||+.+++.+...+...
T Consensus       289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          289 DKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             TSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999998887653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.38  E-value=1.2e-12  Score=150.43  Aligned_cols=152  Identities=12%  Similarity=0.049  Sum_probs=99.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEeccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKTV   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~~   80 (890)
                      ..++|+++|.+++|||||+++|++.....                                 ..+++++..+.....   
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~---   82 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET---   82 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC---
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec---
Confidence            46899999999999999999998631000                                 123333322222221   


Q ss_pred             cceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---chHH---HHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649         81 MKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SLWT---EAETFLAKFRAIFESNESVREKRG  154 (890)
Q Consensus        81 ~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~~~---~L~~wlq~I~e~~~~ll~~~~~~~  154 (890)
                      .+..+.||||||+..|......+    +.  .+|++|+|+|+++..   +| +   ....++..+               
T Consensus        83 ~~~~~~iiDtPGh~~f~~~~~~~----~~--~aD~~ilVvda~~g~~~~sf-~~~~qt~~~~~~~---------------  140 (458)
T 1f60_A           83 PKYQVTVIDAPGHRDFIKNMITG----TS--QADCAILIIAGGVGEFEAGI-SKDGQTREHALLA---------------  140 (458)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHS----SS--CCSEEEEEEECSHHHHHHHT-CTTSHHHHHHHHH---------------
T ss_pred             CCceEEEEECCCcHHHHHHHHhh----hh--hCCEEEEEEeCCcCcccccc-CcchhHHHHHHHH---------------
Confidence            23479999999998876665555    22  599999999998752   11 0   111111111               


Q ss_pred             ccccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649        155 SFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       155 ~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L  228 (890)
                                       ...++| ++||+||+|+.. .+.+....+..+++.++..+|     ++++++||++|.|++++
T Consensus       141 -----------------~~~~v~~iivviNK~Dl~~-~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          141 -----------------FTLGVRQLIVAVNKMDSVK-WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             -----------------HHTTCCEEEEEEECGGGGT-TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             -----------------HHcCCCeEEEEEEcccccc-CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence                             113576 999999999962 122233456667888887776     68999999999998754

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.6e-12  Score=154.40  Aligned_cols=156  Identities=13%  Similarity=0.048  Sum_probs=98.8

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCCC---------------------------------CCCccceeEEEEEEecc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTP---------------------------------KPTLALEYIYARKSGKT   79 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~~---------------------------------kptigvdY~f~~~~g~~   79 (890)
                      ...++|+++|.+|+|||||+++|++.....                                 .++++++..+.....  
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~--  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST--  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC--
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec--
Confidence            346899999999999999999999752211                                 123443322222221  


Q ss_pred             ccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---chHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q psy11649         80 VMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SLWTEAETFLAKFRAIFESNESVREKRGSF  156 (890)
Q Consensus        80 ~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l  156 (890)
                       .+..+.||||||+..|......+    +.  ++|++|+|+|+++..   ++ +....+..    ++..           
T Consensus       243 -~~~~~~iiDTPG~e~f~~~~~~~----~~--~aD~~llVVDa~~g~~e~~~-~~~~qt~e----~l~~-----------  299 (611)
T 3izq_1          243 -HRANFTIVDAPGHRDFVPNAIMG----IS--QADMAILCVDCSTNAFESGF-DLDGQTKE----HMLL-----------  299 (611)
T ss_dssp             -SSCEEEEEECCSSSCHHHHHTTT----SS--CCSEEEEEEECSHHHHHTTC-CTTSHHHH----HHHH-----------
T ss_pred             -CCceEEEEECCCCcccHHHHHHH----Hh--hcCceEEEEECCCCcccccc-hhhhHHHH----HHHH-----------
Confidence             23379999999998886665555    22  599999999998741   10 00001111    1110           


Q ss_pred             ccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHHH
Q psy11649        157 EHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       157 ~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~L  228 (890)
                                    ...+++| ++||+||+|+.. .+.+....+...+..+...+|     +++++|||++|.|++++
T Consensus       300 --------------~~~lgi~~iIVVvNKiDl~~-~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          300 --------------ASSLGIHNLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             --------------HHTTTCCEEEEEEECTTTTT-TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             --------------HHHcCCCeEEEEEecccccc-hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence                          1122444 999999999863 112223344556666666655     58999999999999865

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.36  E-value=1.5e-12  Score=139.43  Aligned_cols=155  Identities=17%  Similarity=0.125  Sum_probs=91.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC--------CCCCc-----------------cceeEEEEEE------------
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDT--------PKPTL-----------------ALEYIYARKS------------   76 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~--------~kpti-----------------gvdY~f~~~~------------   76 (890)
                      ...+|+|+|.+|||||||+|+|++....        ..|+.                 |..|  .+..            
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~--tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF--TDFEEVRLEIEAETDR  102 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB--CCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc--CCHHHHHHHHHHHHHH
Confidence            4579999999999999999999986432        12320                 0000  0000            


Q ss_pred             --e--------------ccccceEEEEEEcCCCcc-------------hhhHHhhhhccccccccCcEEE-EEEeCCCcC
Q psy11649         77 --G--------------KTVMKDICHLWELGSGTS-------------RLEVASLFSSFSLTAQSGFTLV-LMLDLSRLN  126 (890)
Q Consensus        77 --g--------------~~~~k~~l~IwDlpG~~~-------------~~~Li~~~r~~~~~~~~ad~II-IV~DlSnp~  126 (890)
                        +              .......+.+|||||...             +..+...+    ++  +++.+| +|+|.++..
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~il~v~d~~~~~  176 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQF----VT--KENCLILAVSPANSDL  176 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHH----HT--STTEEEEEEEESSSCG
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHH----Hc--CCCeEEEEEecCCcch
Confidence              0              000123799999999642             23344444    11  356555 799998865


Q ss_pred             chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHH
Q psy11649        127 SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL  206 (890)
Q Consensus       127 S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~l  206 (890)
                      +. .....|.+.                                ....+.|+++|+||+|+...     .......++..
T Consensus       177 ~~-~~~~~~~~~--------------------------------~~~~~~~~i~V~NK~Dl~~~-----~~~~~~~~~~~  218 (299)
T 2aka_B          177 AN-SDALKIAKE--------------------------------VDPQGQRTIGVITKLDLMDE-----GTDARDVLENK  218 (299)
T ss_dssp             GG-CHHHHHHHH--------------------------------HCTTCSSEEEEEECGGGSCT-----TCCCHHHHTTC
T ss_pred             hh-hHHHHHHHH--------------------------------hCCCCCeEEEEEEccccCCC-----CchHHHHHhCC
Confidence            43 122223321                                11236899999999999632     11111222210


Q ss_pred             --HHHcC-CeEEEEeccCCCCHHHHHHHHHH
Q psy11649        207 --AHVNG-ASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       207 --a~~~G-a~l~etSAK~~~nId~Lk~~I~~  234 (890)
                        ....| ++++++||+++.|++++++.|..
T Consensus       219 ~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          219 LLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             SSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             cCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence              01113 46889999999999999888865

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.33  E-value=5.3e-12  Score=156.63  Aligned_cols=159  Identities=12%  Similarity=0.057  Sum_probs=105.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC---C--C-------------CCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN---D--T-------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~--~-------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ...++|+++|.+++|||||+++|++..   +  .             ...+++++..+...   ......+.||||||++
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f---~~~~~kI~IIDTPGHe  370 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY---DTPTRHYAHVDCPGHA  370 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE---ECSSCEEEEEECCCHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE---cCCCEEEEEEECCChH
Confidence            346899999999999999999998730   0  0             01122222111111   1123489999999998


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .|......+    +.  .+|++|+|+|+++....  ....|+..+..                                .
T Consensus       371 dF~~~mi~g----as--~AD~aILVVDAtdGv~~--QTrEhL~ll~~--------------------------------l  410 (1289)
T 3avx_A          371 DYVKNMITG----AA--QMDGAILVVAATDGPMP--QTREHILLGRQ--------------------------------V  410 (1289)
T ss_dssp             HHHHHHHHT----SC--CCSEEEEEEETTTCSCT--THHHHHHHHHH--------------------------------H
T ss_pred             HHHHHHHHH----Hh--hCCEEEEEEcCCccCcH--HHHHHHHHHHH--------------------------------c
Confidence            876555444    22  59999999999996543  33344433321                                2


Q ss_pred             CCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCC--------CCHHHHHHHHHHHH
Q psy11649        175 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDP--------GLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~--------~nId~Lk~~I~~~l  236 (890)
                      ++| +|||+||+|+..  +.+..+.+..+++.++..+|     ++++++||++|        .|+++|.+.|...+
T Consensus       411 gIP~IIVVINKiDLv~--d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          411 GVPYIIVFLNKCDMVD--DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TCSCEEEEEECCTTCC--CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             CCCeEEEEEeeccccc--chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            688 899999999963  11112345567788888776     58999999999        46888888887754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.33  E-value=6.8e-12  Score=148.53  Aligned_cols=161  Identities=11%  Similarity=0.053  Sum_probs=99.5

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------CCCCCccceeEEEEEE------ecccc-------ceEEEEEEcCCCc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------TPKPTLALEYIYARKS------GKTVM-------KDICHLWELGSGT   94 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------~~kptigvdY~f~~~~------g~~~~-------k~~l~IwDlpG~~   94 (890)
                      +..+|+|+|.+|+|||||+++|++...      ...++++..+  ....      +....       ...+++|||||++
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~--~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATE--IPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEE--EEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEE--EeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            457899999999999999999987411      1223444332  1111      10000       1159999999998


Q ss_pred             chhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         95 SRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        95 ~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      .|..+...+    ++  .+|++|+|+|+++.-.- .+.+.|. .++                                ..
T Consensus        82 ~F~~~~~r~----~~--~aD~aILVvDa~~Gv~~-qT~e~l~-~l~--------------------------------~~  121 (594)
T 1g7s_A           82 AFTTLRKRG----GA--LADLAILIVDINEGFKP-QTQEALN-ILR--------------------------------MY  121 (594)
T ss_dssp             CCTTSBCSS----SB--SCSEEEEEEETTTCCCH-HHHHHHH-HHH--------------------------------HT
T ss_pred             HHHHHHHHH----Hh--hCCEEEEEEECCCCccH-hHHHHHH-HHH--------------------------------Hc
Confidence            887665544    22  59999999999993221 2222222 111                                12


Q ss_pred             CCcEEEEeecccCCCCCCcc---------------hhhhhHHH----HHHHHHH--------------cCCeEEEEeccC
Q psy11649        175 PVPLILIGGKYDLFENLEPN---------------KKRIAVQC----LRYLAHV--------------NGASLLFHSSLD  221 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e---------------~r~~i~~~----lr~la~~--------------~Ga~l~etSAK~  221 (890)
                      ++|+++|+||+|+.......               -+....+.    ...+...              ..++++++||++
T Consensus       122 ~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~t  201 (594)
T 1g7s_A          122 RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAIT  201 (594)
T ss_dssp             TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTT
T ss_pred             CCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccC
Confidence            68999999999996432210               00111111    1122211              113799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy11649        222 PGLVKRTRDILNHYA  236 (890)
Q Consensus       222 ~~nId~Lk~~I~~~l  236 (890)
                      |.|+++|.+.|...+
T Consensus       202 G~GI~eLl~~I~~~~  216 (594)
T 1g7s_A          202 GEGIPELLTMLMGLA  216 (594)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHhhc
Confidence            999999999998775

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.33  E-value=7.2e-12  Score=138.65  Aligned_cols=121  Identities=17%  Similarity=0.130  Sum_probs=81.4

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCC----------CcCchHHHHHHHHHHHHHHHhhhhhhhhh
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS----------RLNSLWTEAETFLAKFRAIFESNESVREK  152 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlS----------np~S~~~~L~~wlq~I~e~~~~ll~~~~~  152 (890)
                      .+++|||++|+++++.++..|    |+  +++++|+|+|+|          +..++ .....|+..+..   .       
T Consensus       161 v~l~iwDtaGQe~~R~~w~~y----y~--~a~~iIfV~diS~ydq~l~e~~~~nr~-~es~~~~~~i~~---~-------  223 (340)
T 4fid_A          161 IPFHLIDVGGQRSERKXWVSF----FS--DVDCAIFVTSLAEYDMKLYEDGNTSRL-TESIAVFKDIMT---N-------  223 (340)
T ss_dssp             CEEEEEECCSCHHHHHHHHTT----SC--SCSEEEEEEEGGGTTCBCC--CCSBHH-HHHHHHHHHHHH---C-------
T ss_pred             eeeccccCCCcccccccHHHH----hc--cCCEEEEEEECCccccccccccccchH-HHHHHHHHHHhh---h-------
Confidence            489999999999999999988    34  699999999999          56666 333334433322   1       


Q ss_pred             ccccccccccccccccccccCCCCcEEEEeecccCCCC-C---------Cc-chhhhhHHHHHHHHHHc-----------
Q psy11649        153 RGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-L---------EP-NKKRIAVQCLRYLAHVN-----------  210 (890)
Q Consensus       153 ~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-~---------d~-e~r~~i~~~lr~la~~~-----------  210 (890)
                                        ....++|++|+|||+|+..+ .         .+ .......+..+.+..++           
T Consensus       224 ------------------~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~  285 (340)
T 4fid_A          224 ------------------EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNI  285 (340)
T ss_dssp             ------------------GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC
T ss_pred             ------------------hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhc
Confidence                              01125899999999998631 0         00 00001122222222233           


Q ss_pred             ---------------CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        211 ---------------GASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       211 ---------------Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                                     ++.+++|||++..||+.+++.+...++.
T Consensus       286 ~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          286 SGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             --------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence                           3678999999999999999998888765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.32  E-value=1e-12  Score=146.55  Aligned_cols=159  Identities=13%  Similarity=0.061  Sum_probs=80.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CC--------CCCccceeEEEEEEecccc-ceEEEEEEcCCC-------c
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TP--------KPTLALEYIYARKSGKTVM-KDICHLWELGSG-------T   94 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~--------kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~-------~   94 (890)
                      ..++|+|+|.+|||||||+++|++...   .+        .+|+++++  ......... ...+.||||||.       +
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~--~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e  113 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEA--STVEIEERGVKLRLTVVDTPGYGDAINCRD  113 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEE--EEEC----CEEEEEEEEC------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEE--EEEEeecCCcccceEEEEeccccccCccHH
Confidence            468999999999999999999877421   11        24555442  122211111 227999999998       5


Q ss_pred             chhhHHh-------hh-hc------cccccccCcEEEEEEeCCC-cCchHHHHH-HHHHHHHHHHhhhhhhhhhcccccc
Q psy11649         95 SRLEVAS-------LF-SS------FSLTAQSGFTLVLMLDLSR-LNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEH  158 (890)
Q Consensus        95 ~~~~Li~-------~~-r~------~~~~~~~ad~IIIV~DlSn-p~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~~  158 (890)
                      ++..+..       .| +.      ..+.  ++.+.++||++++ ..++ ..+. .|++.+                   
T Consensus       114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~--d~rv~~~vy~I~~~~~~l-~~~d~~~~~~l-------------------  171 (361)
T 2qag_A          114 CFKTIISYIDEQFERYLHDESGLNRRHII--DNRVHCCFYFISPFGHGL-KPLDVAFMKAI-------------------  171 (361)
T ss_dssp             --CCTHHHHHHHHHHHHHHHTCSCCC-CC--CCCCCEEEEEECSSSSSC-CHHHHHHHHHT-------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccccc--CCceEEEEEEEecCCCCc-chhHHHHHHHh-------------------
Confidence            5655554       33 11      0111  2223345555554 3444 3333 233211                   


Q ss_pred             ccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhH--HHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        159 FRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAV--QCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       159 ~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~--~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                                    ..++|+|+|+||+|+..     .+....  ..++.++..+|++++++||+++.+ ++....+...+
T Consensus       172 --------------~~~~piIlV~NK~Dl~~-----~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i  231 (361)
T 2qag_A          172 --------------HNKVNIVPVIAKADTLT-----LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL  231 (361)
T ss_dssp             --------------CS-SCEEEEEECCSSSC-----HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred             --------------ccCCCEEEEEECCCCCC-----HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence                          12689999999999962     333322  577888888899999999999998 55544444443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.1e-11  Score=138.89  Aligned_cols=243  Identities=12%  Similarity=0.020  Sum_probs=137.5

Q ss_pred             CccccccCCccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----
Q psy11649         24 SEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----   96 (890)
Q Consensus        24 ~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----   96 (890)
                      .++++...+.+..+|+|||.||||||||+|+|++..   .++ |..+++-......   ..+.++++.||||....    
T Consensus        61 ~~~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~-pftT~~~~~g~~~---~~~~~i~l~D~pGl~~~a~~~  136 (376)
T 4a9a_A           61 AGIGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEY-EFTTLVTVPGVIR---YKGAKIQMLDLPGIIDGAKDG  136 (376)
T ss_dssp             CSBTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGT-CSSCCCEEEEEEE---ETTEEEEEEECGGGCCC----
T ss_pred             CCCCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCC-CCceeeeeeEEEE---eCCcEEEEEeCCCccCCchhh
Confidence            345677888999999999999999999999999843   233 5555553222221   22348999999997532    


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh-----hhccc----cccc--------
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR-----EKRGS----FEHF--------  159 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~-----~~~~~----l~~~--------  159 (890)
                      ..+...+ -...+  .+|++++|+|.++|..-   .+....++......+....     +....    +...        
T Consensus       137 ~~~g~~~-l~~i~--~ad~il~vvD~~~p~~~---~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~  210 (376)
T 4a9a_A          137 RGRGKQV-IAVAR--TCNLLFIILDVNKPLHH---KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGN  210 (376)
T ss_dssp             -CHHHHH-HHHHH--HCSEEEEEEETTSHHHH---HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCH
T ss_pred             hHHHHHH-HHHHH--hcCccccccccCccHHH---HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccH
Confidence            1122222 00011  39999999999987543   2222233322211111100     00000    0000        


Q ss_pred             -----------c-----------cccccccc-ccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEE
Q psy11649        160 -----------R-----------TADEHRDK-GLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLF  216 (890)
Q Consensus       160 -----------~-----------~~~~~~d~-~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~e  216 (890)
                                 +           ..++..+. .......+|+++|+||+|...          .+++..+...  -.+++
T Consensus       211 eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~~~----------~eele~l~~~--~~~~~  278 (376)
T 4a9a_A          211 DEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDSLS----------IEELELLYRI--PNAVP  278 (376)
T ss_dssp             HHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGGSC----------HHHHHHHTTS--TTEEE
T ss_pred             HHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccccC----------HHHHHHHhcc--cchhh
Confidence                       0           00010110 112234679999999999752          1223333221  24788


Q ss_pred             EeccCCCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCCCCCCCCccccccccccccchhHHHhhc
Q psy11649        217 HSSLDPGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRG  296 (890)
Q Consensus       217 tSAK~~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~  296 (890)
                      +|+..+.|+++|.+.+..++--..+ ........+...+|.|      +..|    .++..+++..+|+++...|.++.+
T Consensus       279 is~~~e~gLd~Li~~~y~~L~Li~~-fT~g~~E~rawt~~~~------~~a~----~at~~D~a~~ih~d~~~~F~~a~v  347 (376)
T 4a9a_A          279 ISSGQDWNLDELLQVMWDRLNLVRI-YTKPKGQIPDFTDPVV------LRSD----RCSVKDFCNQIHKSLVDDFRNALV  347 (376)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHCCEEE-EECCSSSCCCSSSCEE------EBTT----BCBHHHHHHHHCGGGGGGEEEEEE
T ss_pred             hhhhhcccchhHHHHHHHHcCCcEE-EeCCCCCcCCCCcccc------ccCC----CCcHHHHHHHHHHHHHHhhhHhhh
Confidence            9999999999999998888721111 1111112222222211      1112    468889999999999999999999


Q ss_pred             ccc
Q psy11649        297 WIE  299 (890)
Q Consensus       297 w~~  299 (890)
                      |=.
T Consensus       348 ~Gs  350 (376)
T 4a9a_A          348 YGS  350 (376)
T ss_dssp             EST
T ss_pred             cCc
Confidence            943

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.29  E-value=2.4e-12  Score=152.43  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=83.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC---------------------------------CCCCCCccceeEEEEEEec
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN---------------------------------DTPKPTLALEYIYARKSGK   78 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~---------------------------------~~~kptigvdY~f~~~~g~   78 (890)
                      ....++|+++|.+|+|||||+++|++..                                 ....++++++..+..... 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            3455789999999999999999996420                                 011334454433322221 


Q ss_pred             cccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC---ch--HHHHHHHHHHHHHHHhhhhhhhhhc
Q psy11649         79 TVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN---SL--WTEAETFLAKFRAIFESNESVREKR  153 (890)
Q Consensus        79 ~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~---S~--~~~L~~wlq~I~e~~~~ll~~~~~~  153 (890)
                        .+..+.||||||+..|.......    +.  .+|++|+|+|+++..   .+  .......+..               
T Consensus       253 --~~~~i~iiDTPGh~~f~~~~~~~----~~--~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~---------------  309 (592)
T 3mca_A          253 --DKKIYEIGDAPGHRDFISGMIAG----AS--SADFAVLVVDSSQNNFERGFLENGQTREHAYL---------------  309 (592)
T ss_dssp             --------CCEEESSSEEEEECCC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHH---------------
T ss_pred             --CCeEEEEEECCChHHHHHHHHHH----Hh--hCCEEEEEEECCCCccccccccchHHHHHHHH---------------
Confidence              12379999999998775444333    22  499999999999642   00  0011111111               


Q ss_pred             cccccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHH-HHcCC-----eEEEEeccCCCCHH
Q psy11649        154 GSFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNGA-----SLLFHSSLDPGLVK  226 (890)
Q Consensus       154 ~~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la-~~~Ga-----~l~etSAK~~~nId  226 (890)
                                       ...+++| +|||+||+|+.. .+.+....+...++.+. ..+|+     +++++||++|.|++
T Consensus       310 -----------------~~~lgip~iIvviNKiDl~~-~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          310 -----------------LRALGISEIVVSVNKLDLMS-WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             -----------------HHHSSCCCEEEEEECGGGGT-TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             -----------------HHHcCCCeEEEEEecccccc-ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence                             1113676 999999999852 12223344556666666 55565     69999999999998

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.28  E-value=2.1e-11  Score=129.54  Aligned_cols=124  Identities=13%  Similarity=0.064  Sum_probs=77.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-h--ccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-S--SFS  107 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r--~~~  107 (890)
                      ..++|+|+|.+|||||||+|+|++...   ...++.+.+.......   ..+..+.||||||+..+..+...+ +  ...
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT---MGGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEE---ETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEE---ECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            478999999999999999999998642   2223333232211111   123379999999997664332222 0  000


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +...+++++++|+|++... +.+.-..|++.+.+....                           ....|+++|+||+|+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~---------------------------~~~~~~ivv~nK~Dl  163 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGK---------------------------EIWCKTLLVLTHAQF  163 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCG---------------------------GGGGGEEEEEECTTC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhch---------------------------hhhcCEEEEEeCccc
Confidence            1001389999999998755 423334677777665432                           112599999999998


Q ss_pred             C
Q psy11649        188 F  188 (890)
Q Consensus       188 ~  188 (890)
                      .
T Consensus       164 ~  164 (262)
T 3def_A          164 S  164 (262)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.26  E-value=3.6e-13  Score=156.20  Aligned_cols=156  Identities=11%  Similarity=0.031  Sum_probs=95.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      +..+|+++|..++|||||+++|++..  ....++++.+.......   ..+..+.+|||||++.|..+....    +.  
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~---~~~~~i~~iDTPGhe~f~~~~~~~----~~--   73 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVE---TENGMITFLDTPGHAAFTSMRARG----AQ--   73 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCC---TTSSCCCEECCCTTTCCTTSBCSS----SB--
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEE---ECCEEEEEEECCCcHHHHHHHHHH----Hh--
Confidence            45689999999999999999998731  12223444332111111   112378999999998886665444    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      .+|++|+|+|+++.... ...+.| ..+                                ...++|+++|+||+|+....
T Consensus        74 ~aD~aILVVda~~g~~~-qT~e~l-~~~--------------------------------~~~~vPiIVviNKiDl~~~~  119 (501)
T 1zo1_I           74 ATDIVVLVVAADDGVMP-QTIEAI-QHA--------------------------------KAAQVPVVVAVNKIDKPEAD  119 (501)
T ss_dssp             SCSSEEEEEETTTBSCT-TTHHHH-HHH--------------------------------HHTTCCEEEEEECSSSSTTC
T ss_pred             hCCEEEEEeecccCccH-HHHHHH-HHH--------------------------------HhcCceEEEEEEeccccccC
Confidence            58999999999983321 111222 111                                11368999999999985311


Q ss_pred             CcchhhhhHHHHHHHHHHcC--CeEEEEeccCCCCHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~G--a~l~etSAK~~~nId~Lk~~I~  233 (890)
                      ...-..... ....++..++  ++++++||++|.|+++|++.|.
T Consensus       120 ~~~v~~~l~-~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~  162 (501)
T 1zo1_I          120 PDRVKNELS-QYGILPEEWGGESQFVHVSAKAGTGIDELLDAIL  162 (501)
T ss_dssp             CCCTTCCCC-CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTT
T ss_pred             HHHHHHHHH-HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhh
Confidence            000000000 0011223344  6899999999999999988764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.25  E-value=7.1e-12  Score=139.22  Aligned_cols=107  Identities=12%  Similarity=0.038  Sum_probs=71.4

Q ss_pred             EEEEEEcCCCcch-------------hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhh
Q psy11649         84 ICHLWELGSGTSR-------------LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVR  150 (890)
Q Consensus        84 ~l~IwDlpG~~~~-------------~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~  150 (890)
                      .+.+|||||..++             ..+...|    +.  +++++|+|+|.++....   ...|+..++.         
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~----i~--~~d~iilvv~~~~~~~~---~~~~~~l~~~---------  198 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSY----IE--KPNCIILAISPANQDLA---TSDAIKISRE---------  198 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHH----HH--SSSEEEEEEEETTSCGG---GCHHHHHHHH---------
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHH----hh--cCCeEEEEeecccCCcC---CHHHHHHHHH---------
Confidence            6899999998765             4444444    22  59999999998765442   1334433322         


Q ss_pred             hhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649        151 EKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRD  230 (890)
Q Consensus       151 ~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~  230 (890)
                                          +...+.|+++|+||+|+..     ........++.++..++..++.+|++++.+++....
T Consensus       199 --------------------~~~~~~~~i~V~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~  253 (360)
T 3t34_A          199 --------------------VDPSGDRTFGVLTKIDLMD-----KGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVD  253 (360)
T ss_dssp             --------------------SCTTCTTEEEEEECGGGCC-----TTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCC
T ss_pred             --------------------hcccCCCEEEEEeCCccCC-----CcccHHHHHcCccccccCCeEEEEECChHHhccCCC
Confidence                                2334789999999999973     222223344445566788899999999998887654


Q ss_pred             HHH
Q psy11649        231 ILN  233 (890)
Q Consensus       231 ~I~  233 (890)
                      .+.
T Consensus       254 ~~~  256 (360)
T 3t34_A          254 MIA  256 (360)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.23  E-value=4.5e-11  Score=143.99  Aligned_cols=111  Identities=13%  Similarity=0.014  Sum_probs=75.5

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC----------------------CCCCCccceeEEEEEEeccccceEEEEEEc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND----------------------TPKPTLALEYIYARKSGKTVMKDICHLWEL   90 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~----------------------~~kptigvdY~f~~~~g~~~~k~~l~IwDl   90 (890)
                      ....+|+|+|.+|+|||||+++|+....                      ....|+...  ......   ....++||||
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~---~~~~i~liDT   84 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW---KDHRINIIDT   84 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE---TTEEEEEECC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE---CCeEEEEEEC
Confidence            4568999999999999999999984100                      112222222  111111   2348999999


Q ss_pred             CCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         91 GSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        91 pG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      ||+..|......+ +       .+|++|+|+|.++..+. .....|.. +.+                            
T Consensus        85 PG~~df~~~~~~~l~-------~aD~~ilVvDa~~g~~~-~t~~~~~~-~~~----------------------------  127 (691)
T 1dar_A           85 PGHVDFTIEVERSMR-------VLDGAIVVFDSSQGVEP-QSETVWRQ-AEK----------------------------  127 (691)
T ss_dssp             CSSTTCHHHHHHHHH-------HCSEEEEEEETTTCSCH-HHHHHHHH-HHH----------------------------
T ss_pred             cCccchHHHHHHHHH-------HCCEEEEEEECCCCcch-hhHHHHHH-HHH----------------------------
Confidence            9998887666655 3       39999999999998876 45555543 111                            


Q ss_pred             cccCCCCcEEEEeecccCCC
Q psy11649        170 LIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       170 li~~l~IPiIVVgNK~Dl~~  189 (890)
                          .++|+++|+||+|+..
T Consensus       128 ----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A          128 ----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             ----TTCCEEEEEECTTSTT
T ss_pred             ----cCCCEEEEEECCCccc
Confidence                2689999999999863

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.23  E-value=8.1e-11  Score=141.21  Aligned_cols=111  Identities=14%  Similarity=0.036  Sum_probs=74.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC--CC------------------CCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDT--PK------------------PTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~--~k------------------ptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ...+|+|+|..|+|||||+++|++....  ..                  .++++...  .... ......++||||||+
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~--~~~~-~~~~~~~nliDTpG~   84 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTG--VAPL-LFRGHRVFLLDAPGY   84 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCE--EEEE-EETTEEEEEEECCCS
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEec--ceEE-eeCCEEEEEEeCCCc
Confidence            3578999999999999999999952111  10                  12222211  1111 112348999999999


Q ss_pred             cchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649         94 TSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR  172 (890)
Q Consensus        94 ~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~  172 (890)
                      ..|......+ +       .+|++++|+|.++....  ....++..+..                               
T Consensus        85 ~~f~~~~~~~l~-------~ad~~ilVvD~~~g~~~--qt~~~~~~~~~-------------------------------  124 (665)
T 2dy1_A           85 GDFVGEIRGALE-------AADAALVAVSAEAGVQV--GTERAWTVAER-------------------------------  124 (665)
T ss_dssp             GGGHHHHHHHHH-------HCSEEEEEEETTTCSCH--HHHHHHHHHHH-------------------------------
T ss_pred             cchHHHHHHHHh-------hcCcEEEEEcCCcccch--hHHHHHHHHHH-------------------------------
Confidence            9887666555 3       38999999999886553  33333332221                               


Q ss_pred             CCCCcEEEEeecccCC
Q psy11649        173 TFPVPLILIGGKYDLF  188 (890)
Q Consensus       173 ~l~IPiIVVgNK~Dl~  188 (890)
                       .++|+++|+||+|+.
T Consensus       125 -~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          125 -LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             -TTCCEEEEEECGGGC
T ss_pred             -ccCCEEEEecCCchh
Confidence             268999999999985

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.23  E-value=1.2e-10  Score=132.41  Aligned_cols=160  Identities=19%  Similarity=0.140  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFS  107 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~  107 (890)
                      ..|+|+|.+|||||||+++|++...   .+ +..++.........  .....+.+||++|....    ..+...+ +.  
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-~ftTl~p~~G~V~~--~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~--  232 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY-PFTTLSPNLGVVEV--SEEERFTLADIPGIIEGASEGKGLGLEFLRH--  232 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCC-TTCSSCCEEEEEEC--SSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCc-ccceecceeeEEEe--cCcceEEEEeccccccchhhhhhhhHHHHHH--
Confidence            3489999999999999999998521   11 21222211111111  11237899999997532    1121222 11  


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      .  ..++.++.|+|++ ...+ ..+..|.+++......+.                           ..|.++|+||+|+
T Consensus       233 ~--era~~lL~vvDls-~~~~-~~ls~g~~el~~la~aL~---------------------------~~P~ILVlNKlDl  281 (416)
T 1udx_A          233 I--ARTRVLLYVLDAA-DEPL-KTLETLRKEVGAYDPALL---------------------------RRPSLVALNKVDL  281 (416)
T ss_dssp             H--TSSSEEEEEEETT-SCHH-HHHHHHHHHHHHHCHHHH---------------------------HSCEEEEEECCTT
T ss_pred             H--HHHHhhhEEeCCc-cCCH-HHHHHHHHHHHHHhHHhh---------------------------cCCEEEEEECCCh
Confidence            1  1389999999998 4444 778888776665433222                           3699999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      ..      + .....+.+.+...++.++++||+++.|++++++.|...+..
T Consensus       282 ~~------~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          282 LE------E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS  325 (416)
T ss_dssp             SC------H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hh------H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence            52      2 23344556666678899999999999999999999998854

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.21  E-value=1.5e-10  Score=135.32  Aligned_cols=113  Identities=14%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCC------------------------CCCccceeEEEEEEeccccceEEEEEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDTP------------------------KPTLALEYIYARKSGKTVMKDICHLWE   89 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~------------------------kptigvdY~f~~~~g~~~~k~~l~IwD   89 (890)
                      ...+|+|+|.+|+|||||+++|+......                        ..++++......   .......++|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~---~~~~~~~i~liD   88 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQ---FPYHDCLVNLLD   88 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEE---EEETTEEEEEEC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEE---EEECCeEEEEEE
Confidence            35799999999999999999998631100                        001111100000   111234899999


Q ss_pred             cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      |||+..|......+    ++  .+|++|+|+|.++....  ....+++    .+                          
T Consensus        89 TPG~~df~~~~~~~----l~--~aD~~IlVvDa~~g~~~--~t~~~~~----~~--------------------------  130 (529)
T 2h5e_A           89 TPGHEDFSEDTYRT----LT--AVDCCLMVIDAAKGVED--RTRKLME----VT--------------------------  130 (529)
T ss_dssp             CCCSTTCCHHHHHG----GG--GCSEEEEEEETTTCSCH--HHHHHHH----HH--------------------------
T ss_pred             CCCChhHHHHHHHH----HH--HCCEEEEEEeCCccchH--HHHHHHH----HH--------------------------
Confidence            99998886655555    22  49999999999986542  2222222    11                          


Q ss_pred             cccCCCCcEEEEeecccCCC
Q psy11649        170 LIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       170 li~~l~IPiIVVgNK~Dl~~  189 (890)
                        ...++|+++|+||+|+..
T Consensus       131 --~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A          131 --RLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             --TTTTCCEEEEEECTTSCC
T ss_pred             --HHcCCCEEEEEcCcCCcc
Confidence              123689999999999853

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.18  E-value=1.4e-10  Score=139.87  Aligned_cols=165  Identities=18%  Similarity=0.195  Sum_probs=100.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccc--eeEE------EEEE--ec---------------cc-----
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLAL--EYIY------ARKS--GK---------------TV-----   80 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigv--dY~f------~~~~--g~---------------~~-----   80 (890)
                      ..++|+|+|.+|+|||||+|+|++...   ...|++..  .+.|      +...  +.               ..     
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999998532   22344421  0000      0100  00               00     


Q ss_pred             ---------------------c---ceEEEEEEcCCCcchh---hHHhhhhccccccccCcEEEEEEeCCCcCchHHHHH
Q psy11649         81 ---------------------M---KDICHLWELGSGTSRL---EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE  133 (890)
Q Consensus        81 ---------------------~---k~~l~IwDlpG~~~~~---~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~  133 (890)
                                           .   +..+.||||||.....   .....+    +.  ++|++|+|+|.+++.+. ..+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~----i~--~aD~vL~Vvda~~~~s~-~e~~  220 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGY----VN--NCHAILFVMRASQPCTL-GERR  220 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHH----HH--SSSEEEEEEETTSTTCH-HHHH
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHH----HH--hCCEEEEEEeCCCccch-hHHH
Confidence                                 0   0258999999975532   223233    22  59999999999998876 4554


Q ss_pred             HHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC--Ccchh---h----hhHHHH-
Q psy11649        134 TFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL--EPNKK---R----IAVQCL-  203 (890)
Q Consensus       134 ~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~--d~e~r---~----~i~~~l-  203 (890)
                      .|.+.                                +...+.|+++|+||+|+..+.  +++..   .    .+.... 
T Consensus       221 ~l~~~--------------------------------l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~  268 (695)
T 2j69_A          221 YLENY--------------------------------IKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFN  268 (695)
T ss_dssp             HHHHH--------------------------------TTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--------------------------------HHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHH
Confidence            45432                                122367999999999986321  11110   0    011111 


Q ss_pred             HHHHHHc--------CCeEEEEecc--------------CCCCHHHHHHHHHHHHh
Q psy11649        204 RYLAHVN--------GASLLFHSSL--------------DPGLVKRTRDILNHYAF  237 (890)
Q Consensus       204 r~la~~~--------Ga~l~etSAK--------------~~~nId~Lk~~I~~~lf  237 (890)
                      ..+....        +..+++|||+              ++.|++++.+.|...+.
T Consensus       269 ~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          269 ANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence            1122221        2469999999              99999999999988763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.18  E-value=3.1e-11  Score=131.34  Aligned_cols=165  Identities=12%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC-CC--CC--------CCCccceeEEEEEEec-cccceEEEEEEcCCC-------
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK-ND--TP--------KPTLALEYIYARKSGK-TVMKDICHLWELGSG-------   93 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~-~~--~~--------kptigvdY~f~~~~g~-~~~k~~l~IwDlpG~-------   93 (890)
                      .-.++|+|+|++|||||||+++|++. ..  ..        .++++..  +...... ......+.+||++|.       
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~--~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIE--ASTVEIEERGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEe--eEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence            34689999999999999999998874 21  11        1222221  1111111 111237999999998       


Q ss_pred             cchhhHHh-------hh-hc------cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q psy11649         94 TSRLEVAS-------LF-SS------FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHF  159 (890)
Q Consensus        94 ~~~~~Li~-------~~-r~------~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~  159 (890)
                      +.+..+..       .+ +.      +.+....+++++++.+.+. .++ +.+..  +.+++. .               
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~L-d~~~~--~~l~~l-~---------------  153 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGL-KPLDV--AFMKAI-H---------------  153 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSC-CHHHH--HHHHHH-T---------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCC-CHHHH--HHHHHH-H---------------
Confidence            55555543       33 11      1111011333444433222 233 23221  222221 1               


Q ss_pred             cccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        160 RTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       160 ~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                                    ..+|+++|+||+|+..   ..+.....+.+++++..+++.++++||+++ |+++++..+...+.
T Consensus       154 --------------~~~~iilV~~K~Dl~~---~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          154 --------------NKVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             --------------TTSCEEEEECCGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             --------------hcCCEEEEEEeCCCCC---HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence                          1479999999999862   122334456788899999999999999999 99999888877763

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.18  E-value=1.8e-10  Score=122.71  Aligned_cols=122  Identities=12%  Similarity=0.019  Sum_probs=75.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHh----hh-hc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVAS----LF-SS  105 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~----~~-r~  105 (890)
                      ..++|+|+|.+|||||||+|+|++...   ...++.+.+..  .... ......+.||||||...+..+..    .. +.
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--MVSR-SRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE--EEEE-EETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE--EEEE-eeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            368999999999999999999998642   11122222211  1111 11234799999999876532211    11 10


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecc
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKY  185 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~  185 (890)
                      -..  .++|++++|+|++.. ++...-..|++.+.+....                           ...+|+++|+||+
T Consensus       115 ~~~--~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~---------------------------~~~~~iivV~nK~  164 (270)
T 1h65_A          115 LLD--KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGK---------------------------GIWNKAIVALTHA  164 (270)
T ss_dssp             TTT--CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCG---------------------------GGGGGEEEEEECC
T ss_pred             hhc--CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCc---------------------------ccccCEEEEEECc
Confidence            001  148999999999764 3422334677666554321                           1136999999999


Q ss_pred             cCC
Q psy11649        186 DLF  188 (890)
Q Consensus       186 Dl~  188 (890)
                      |+.
T Consensus       165 Dl~  167 (270)
T 1h65_A          165 QFS  167 (270)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            985

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.17  E-value=8.1e-11  Score=133.02  Aligned_cols=87  Identities=14%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEE----EE-----------------eccccceEEEEEEcCC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYAR----KS-----------------GKTVMKDICHLWELGS   92 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~----~~-----------------g~~~~k~~l~IwDlpG   92 (890)
                      ++|+|+|.+|||||||+|+|++...  ...|..+.+.....    ..                 ........+++|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            4799999999999999999998532  11222222211111    00                 0000123799999999


Q ss_pred             Ccch----hhHHhhhhccccccccCcEEEEEEeCCCc
Q psy11649         93 GTSR----LEVASLFSSFSLTAQSGFTLVLMLDLSRL  125 (890)
Q Consensus        93 ~~~~----~~Li~~~r~~~~~~~~ad~IIIV~DlSnp  125 (890)
                      ....    +.+...+ ...++  ++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~-l~~i~--~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKF-LDDLR--MASALIHVVDATGK  114 (397)
T ss_dssp             --------------C-CCSST--TCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHH-HHHHh--cCCEEEEEEecccc
Confidence            8542    3333333 01133  69999999999986

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.15  E-value=1.9e-10  Score=138.67  Aligned_cols=114  Identities=13%  Similarity=0.050  Sum_probs=74.9

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC--CCC------C------------CCCccceeEEEEEEeccccceEEEEEEcCC
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK--NDT------P------------KPTLALEYIYARKSGKTVMKDICHLWELGS   92 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~--~~~------~------------kptigvdY~f~~~~g~~~~k~~l~IwDlpG   92 (890)
                      ....+|+|+|.+|+|||||+++|+..  ...      .            .+++++........   .....++||||||
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~---~~~~~i~liDTPG   84 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA---WEGHRVNIIDTPG   84 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE---ETTEEEEEECCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE---ECCeeEEEEECcC
Confidence            34689999999999999999999851  110      0            11112111111111   1234899999999


Q ss_pred             CcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccc
Q psy11649         93 GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIR  172 (890)
Q Consensus        93 ~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~  172 (890)
                      +..|......+    ++  .+|++|+|+|.++..+. .....|.. +.+                               
T Consensus        85 ~~df~~~~~~~----l~--~aD~~llVvDa~~g~~~-~~~~~~~~-~~~-------------------------------  125 (693)
T 2xex_A           85 HVDFTVEVERS----LR--VLDGAVTVLDAQSGVEP-QTETVWRQ-ATT-------------------------------  125 (693)
T ss_dssp             CSSCCHHHHHH----HH--HCSEEEEEEETTTBSCH-HHHHHHHH-HHH-------------------------------
T ss_pred             CcchHHHHHHH----HH--HCCEEEEEECCCCCCcH-HHHHHHHH-HHH-------------------------------
Confidence            98886666555    11  39999999999998776 44444432 211                               


Q ss_pred             CCCCcEEEEeecccCCC
Q psy11649        173 TFPVPLILIGGKYDLFE  189 (890)
Q Consensus       173 ~l~IPiIVVgNK~Dl~~  189 (890)
                       .++|+++|+||+|+..
T Consensus       126 -~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A          126 -YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             -TTCCEEEEEECTTSTT
T ss_pred             -cCCCEEEEEECCCccc
Confidence             2689999999999863

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.15  E-value=1.5e-10  Score=129.19  Aligned_cols=236  Identities=10%  Similarity=0.019  Sum_probs=130.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCC-CCCccceeEEEEEEecc------------ccceEEEEEEcCCCcchhh-
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTP-KPTLALEYIYARKSGKT------------VMKDICHLWELGSGTSRLE-   98 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~-kptigvdY~f~~~~g~~------------~~k~~l~IwDlpG~~~~~~-   98 (890)
                      .+|+|||.+|||||||+|+|++..   .++ ..|+..........+..            .....+++|||||+.++.. 
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            689999999999999999999853   222 11222221111111100            0013799999999987532 


Q ss_pred             ---HHhhhhccccccccCcEEEEEEeCCCc----------CchHHHHHHHHHHHHH--------HHhhhhhhh---h---
Q psy11649         99 ---VASLFSSFSLTAQSGFTLVLMLDLSRL----------NSLWTEAETFLAKFRA--------IFESNESVR---E---  151 (890)
Q Consensus        99 ---Li~~~r~~~~~~~~ad~IIIV~DlSnp----------~S~~~~L~~wlq~I~e--------~~~~ll~~~---~---  151 (890)
                         +...+ -..++  ++|++++|+|+++.          +.+ +.+..+..++.-        .+.++....   .   
T Consensus        83 ~~gl~~~f-l~~ir--~ad~il~VvD~~~~~~v~~v~~~~dp~-~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~  158 (363)
T 1jal_A           83 GEGLGNKF-LANIR--ETDAIGHVVRCFENDDIVHVAGKIDPL-DDIDTINTELALADLDSCERAIQRLQKRAKGGDKEA  158 (363)
T ss_dssp             HGGGTCCH-HHHHH--TCSEEEEEEECSCC---------CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             cchHHHHH-HHHHH--hcCeEEEEEecCCCCceeeecCCcChH-HHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhH
Confidence               22222 00122  59999999999973          222 444444444431        111100000   0   


Q ss_pred             -----hccc----ccccc--ccccc--cccc----cccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeE
Q psy11649        152 -----KRGS----FEHFR--TADEH--RDKG----LIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASL  214 (890)
Q Consensus       152 -----~~~~----l~~~~--~~~~~--~d~~----li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l  214 (890)
                           ....    +++..  ...+.  .+..    +.-....|+++|+||.|.-  ++   .......++.++...++.+
T Consensus       159 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~--~~---~n~~~~~v~~~~~~~~~~~  233 (363)
T 1jal_A          159 KFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDG--FE---NNPYLDRVREIAAKEGAVV  233 (363)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTC--SS---SCHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccc--cc---ccHHHHHHHHHHHHcCCCE
Confidence                 0000    11000  00000  0001    1122358999999999862  11   1234566888898889999


Q ss_pred             EEEeccC----------------------CCCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCccccccccCC-CC
Q psy11649        215 LFHSSLD----------------------PGLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HG  271 (890)
Q Consensus       215 ~etSAK~----------------------~~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r  271 (890)
                      +++||+.                      +.|++++.+...+++ +...            +-+.|.+..    .+. ++
T Consensus       234 i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L-~li~------------~ft~g~~e~----raw~i~  296 (363)
T 1jal_A          234 VPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL-NLQT------------YFTAGVKEV----RAWTVS  296 (363)
T ss_dssp             EEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT-TEEE------------EEEECSSEE----EEEEEE
T ss_pred             EEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh-CCEE------------EECCCCCCc----ceeEec
Confidence            9999764                      356777666655554 1000            112333322    122 66


Q ss_pred             CCCCccccccccccccchhHHHhhcc
Q psy11649        272 KDASLESGGRGFNRSRGMKFEKKRGW  297 (890)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~f~~~~~w  297 (890)
                      ++++..+.+..+|.++...|-++.+|
T Consensus       297 ~G~ta~~aAg~IH~D~~~gFi~Aev~  322 (363)
T 1jal_A          297 VGATAPKAAAVIHTDFEKGFIRAEVI  322 (363)
T ss_dssp             TTCBHHHHHHTTCTTHHHHCCEEEEE
T ss_pred             CCCcHHHHHHhhHHHHHhccEEEEEc
Confidence            78888899999999999999999887

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.15  E-value=1.8e-10  Score=124.43  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND   60 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~   60 (890)
                      ...+|+|+|.+|||||||+|+|++...
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            357899999999999999999998643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.14  E-value=1.3e-10  Score=126.38  Aligned_cols=131  Identities=11%  Similarity=0.102  Sum_probs=99.5

Q ss_pred             HHHHHHHcC--C-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcC
Q psy11649         50 TLVFRFLEK--N-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN  126 (890)
Q Consensus        50 SLInrL~~~--~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~  126 (890)
                      ||+.+++.+  . ..+.||+|..|..  .. ...  .+++|||+  ++++..+...+    ++  ++|++|+|||++++.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~--~~-~~~--~~~~iwD~--qer~~~l~~~~----~~--~ad~vilV~D~~~~~   98 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEY--TP-DET--GSGVIENV--LHRKNLLTKPH----VA--NVDQVILVVTVKMPE   98 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEE--EC-CCS--SSEEEEEE--CCCSCEETTTT----EE--SCCEEEEEECSSTTC
T ss_pred             cEEEEEEcccccccCCCCCCccEEEE--EE-cCC--CeEEEEEE--ccccceeeccc----cc--cCCEEEEEEeCCCCC
Confidence            688787764  3 5678999955432  21 111  26999999  88888888877    33  699999999999998


Q ss_pred             -chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHH
Q psy11649        127 -SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY  205 (890)
Q Consensus       127 -S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~  205 (890)
                       ++ +.+..|+..++.                                .++|++||+||+|+..     .+.+  +++.+
T Consensus        99 ~s~-~~l~~~l~~~~~--------------------------------~~~piilv~NK~DL~~-----~~~v--~~~~~  138 (301)
T 1u0l_A           99 TST-YIIDKFLVLAEK--------------------------------NELETVMVINKMDLYD-----EDDL--RKVRE  138 (301)
T ss_dssp             CCH-HHHHHHHHHHHH--------------------------------TTCEEEEEECCGGGCC-----HHHH--HHHHH
T ss_pred             CCH-HHHHHHHHHHHH--------------------------------CCCCEEEEEeHHHcCC-----chhH--HHHHH
Confidence             55 788999875533                                1589999999999952     3332  45677


Q ss_pred             HHHHcC--CeEEEEeccCCCCHHHHHHHHH
Q psy11649        206 LAHVNG--ASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       206 la~~~G--a~l~etSAK~~~nId~Lk~~I~  233 (890)
                      ++..++  +.+++|||+++.|++++++.+.
T Consensus       139 ~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          139 LEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            777777  8999999999999999987664

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.14  E-value=4.7e-10  Score=135.42  Aligned_cols=116  Identities=10%  Similarity=-0.019  Sum_probs=75.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC------CC--------------CCCccceeEEEEEEec----cccceEEEEE
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND------TP--------------KPTLALEYIYARKSGK----TVMKDICHLW   88 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~------~~--------------kptigvdY~f~~~~g~----~~~k~~l~Iw   88 (890)
                      ....+|+|+|..|+|||||+++|+....      ..              ..++++...+......    ......++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            3467999999999999999999975211      00              1122222222122111    1112489999


Q ss_pred             EcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649         89 ELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK  168 (890)
Q Consensus        89 DlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~  168 (890)
                      ||||+..|...+..+    ++  .+|++|+|+|.++..+. .....|.. +.                            
T Consensus        88 DTPG~~df~~~~~~~----l~--~aD~aIlVvDa~~gv~~-qt~~~~~~-~~----------------------------  131 (704)
T 2rdo_7           88 DTPGHVDFTIEVERS----MR--VLDGAVMVYCAVGGVQP-QSETVWRQ-AN----------------------------  131 (704)
T ss_pred             eCCCccchHHHHHHH----HH--HCCEEEEEEeCCCCCcH-HHHHHHHH-HH----------------------------
Confidence            999998887666555    12  49999999999987664 33333422 11                            


Q ss_pred             ccccCCCCcEEEEeecccCC
Q psy11649        169 GLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       169 ~li~~l~IPiIVVgNK~Dl~  188 (890)
                          ..++|+++|+||+|+.
T Consensus       132 ----~~~ip~ilviNKiD~~  147 (704)
T 2rdo_7          132 ----KYKVPRIAFVNKMDRM  147 (704)
T ss_pred             ----HcCCCEEEEEeCCCcc
Confidence                1268999999999985

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.13  E-value=1.5e-10  Score=128.60  Aligned_cols=101  Identities=15%  Similarity=-0.026  Sum_probs=65.8

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  162 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~  162 (890)
                      ..+.||||||...-...+..         .+|++|+|+|.+....+        +.+.                      
T Consensus       172 ~~~iiiDTpGi~~~~~~~~~---------~aD~vl~V~d~~~~~~~--------~~l~----------------------  212 (355)
T 3p32_A          172 FDVILIETVGVGQSEVAVAN---------MVDTFVLLTLARTGDQL--------QGIK----------------------  212 (355)
T ss_dssp             CCEEEEEECSCSSHHHHHHT---------TCSEEEEEEESSTTCTT--------TTCC----------------------
T ss_pred             CCEEEEeCCCCCcHHHHHHH---------hCCEEEEEECCCCCccH--------HHHH----------------------
Confidence            47899999995432222111         38999999998765543        1000                      


Q ss_pred             ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH----------cCCeEEEEeccCCCCHHHHHHHH
Q psy11649        163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV----------NGASLLFHSSLDPGLVKRTRDIL  232 (890)
Q Consensus       163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~----------~Ga~l~etSAK~~~nId~Lk~~I  232 (890)
                              .....+|+++|+||+|+..      .........++...          ++.++++|||++|.|++++.+.|
T Consensus       213 --------~~~~~~p~ivVlNK~Dl~~------~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i  278 (355)
T 3p32_A          213 --------KGVLELADIVVVNKADGEH------HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTV  278 (355)
T ss_dssp             --------TTSGGGCSEEEEECCCGGG------HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHH
T ss_pred             --------HhHhhcCCEEEEECCCCcC------hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHH
Confidence                    0012368999999999852      11122222223222          25789999999999999999999


Q ss_pred             HHHH
Q psy11649        233 NHYA  236 (890)
Q Consensus       233 ~~~l  236 (890)
                      ...+
T Consensus       279 ~~~~  282 (355)
T 3p32_A          279 ERHR  282 (355)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.09  E-value=2.2e-10  Score=127.62  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=86.5

Q ss_pred             ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCc----------CchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649         82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRL----------NSLWTEAETFLAKFRAIFESNESVRE  151 (890)
Q Consensus        82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp----------~S~~~~L~~wlq~I~e~~~~ll~~~~  151 (890)
                      ...++|||++|+++++.++..+    ++  ++++||+|+|+++.          .++ +....|++.+.   ..      
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~y----f~--~a~~iIfV~dls~~d~~l~ed~~~nr~-~e~~~~~~~i~---~~------  255 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHC----FE--GVTAIIFCVALSDYDLVLAEDEEMNRM-HESMKLFDSIC---NN------  255 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGG----CT--TCSEEEEEEEGGGGGCEETTEEEEEHH-HHHHHHHHHHH---TC------
T ss_pred             CeeEEEEeCCCchhhhHHHHHH----Hh--cCCEEEEEEECccccccccccchhhhH-HHHHHHHHHHH---cC------
Confidence            3489999999999999999888    33  69999999999994          444 44444444332   21      


Q ss_pred             hccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchh---------------hhhHHHHHHHHH--------
Q psy11649        152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKK---------------RIAVQCLRYLAH--------  208 (890)
Q Consensus       152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r---------------~~i~~~lr~la~--------  208 (890)
                                         ....++|++|||||+|+..     ++               .+..+++..++.        
T Consensus       256 -------------------~~~~~~piiLv~NK~DL~~-----~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~  311 (353)
T 1cip_A          256 -------------------KWFTDTSIILFLNKKDLFE-----EKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK  311 (353)
T ss_dssp             -------------------GGGTTSEEEEEEECHHHHH-----HHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCS
T ss_pred             -------------------ccccCCcEEEEEECcCchh-----hhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhc
Confidence                               0112589999999999852     11               134556777765        


Q ss_pred             ---HcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        209 ---VNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       209 ---~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         ..++.+++|||+++.||+++++.+...+..
T Consensus       312 ~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          312 RKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             CTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence               356789999999999999999999887754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.09  E-value=4.1e-10  Score=114.99  Aligned_cols=151  Identities=15%  Similarity=0.041  Sum_probs=90.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-CC-CCCcccee--------------EEEEEEe--c-------------cccce
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-TP-KPTLALEY--------------IYARKSG--K-------------TVMKD   83 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-~~-kptigvdY--------------~f~~~~g--~-------------~~~k~   83 (890)
                      ..+|+|+|.+|||||||+++|++... .. ...+..++              .......  .             .....
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            46899999999999999999987311 01 01111111              0000000  0             11123


Q ss_pred             EEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  163 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~  163 (890)
                      .+.+|||+|+..    .+.+    +. .+++.+++|+|+++....   +..+...                         
T Consensus       110 d~iiidt~G~~~----~~~~----~~-~~~~~~i~vvd~~~~~~~---~~~~~~~-------------------------  152 (221)
T 2wsm_A          110 DLLLIENVGNLI----CPVD----FD-LGENYRVVMVSVTEGDDV---VEKHPEI-------------------------  152 (221)
T ss_dssp             SEEEEEEEEBSS----GGGG----CC-CSCSEEEEEEEGGGCTTH---HHHCHHH-------------------------
T ss_pred             CEEEEeCCCCCC----CCch----hc-cccCcEEEEEeCCCcchh---hhhhhhh-------------------------
Confidence            678899888511    0111    00 137889999999876432   1111110                         


Q ss_pred             cccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        164 EHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       164 ~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                                .++|+++|+||+|+..     .+......+...+..+  +++++++||++|.|++++++.|...+.
T Consensus       153 ----------~~~~~iiv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          153 ----------FRVADLIVINKVALAE-----AVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             ----------HHTCSEEEEECGGGHH-----HHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             ----------hhcCCEEEEecccCCc-----chhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence                      1368999999999852     1112233344444443  478999999999999999999988763

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.07  E-value=4.9e-10  Score=125.44  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=68.1

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCC----------------------CCHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP----------------------GLVKRTRDIL  232 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~----------------------~nId~Lk~~I  232 (890)
                      ..|+++|+||.|.-  +....+......++.++...|+.++++||+.+                      .|++++.+.+
T Consensus       201 ~KPvi~v~N~~e~d--~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~  278 (368)
T 2dby_A          201 AKPVIYVANVAEED--LPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAG  278 (368)
T ss_dssp             GSCEEEEEECCGGG--TTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred             cCCeEEeccccHHh--hcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHH
Confidence            47999999999841  10111123456788899988999999999874                      4455544444


Q ss_pred             HHHHhccCcccccccCCCCcccccCCCccccccccCC-CCCCCCccccccccccccchhHHHhhcc
Q psy11649        233 NHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTT-HGKDASLESGGRGFNRSRGMKFEKKRGW  297 (890)
Q Consensus       233 ~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl-~r~~~~~~~~~~~~~~~~~~~f~~~~~w  297 (890)
                      .+++ +          ...  +-+.|.+..    .+. ++++++..+.+..+|.++...|.++.+|
T Consensus       279 ~~~L-~----------li~--~ft~g~~e~----~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~  327 (368)
T 2dby_A          279 YRAL-D----------LLT--FFTAGEKEV----RAWTVRRGTKAPRAAGEIHSDMERGFIRAEVI  327 (368)
T ss_dssp             HHHT-T----------EEE--EEEESSSCE----EEEEEETTCBHHHHHHHHCHHHHHSCCEEEEE
T ss_pred             HHHh-C----------CEE--EECCCCCCc----ceEEecCCCcHHHHHHhhHHHHHhhCeEEEEc
Confidence            4333 1          000  112333322    133 6678888999999999999999999887

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.07  E-value=4.3e-11  Score=132.75  Aligned_cols=56  Identities=21%  Similarity=0.065  Sum_probs=36.3

Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHH--HHHHcC-CeEEEEeccCCCCHHHHHHHHHH
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRY--LAHVNG-ASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~--la~~~G-a~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      .+.|+++|+||+|+....     ......++.  +....| +.++++||+++.|++++++.+..
T Consensus       196 ~~~~~i~V~NK~Dl~~~~-----~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          196 QGQRTIGVITKLDLMDEG-----TDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TCTTEEEEEECGGGSCTT-----CCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             CCCceEEEeccccccCcc-----hhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            378999999999996321     101111110  111124 35788999999999999888865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.05  E-value=3.7e-10  Score=128.35  Aligned_cols=163  Identities=13%  Similarity=0.109  Sum_probs=79.1

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCCCC---C-------CCCccceeEEEEEEecccc-ceEEEEEEcCCCcch----
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKNDT---P-------KPTLALEYIYARKSGKTVM-KDICHLWELGSGTSR----   96 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~~~---~-------kptigvdY~f~~~~g~~~~-k~~l~IwDlpG~~~~----   96 (890)
                      ..-.++|+|+|++|||||||++.|++....   +       .++++.++  ......... ...+.|||++|....    
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~--i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~  105 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ--SKVLIKEGGVQLLLTIVDTPGFGDAVDNS  105 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEE--EECC------CEEEEEEECC---------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeee--EEEEEecCCcccceeeeechhhhhhccch
Confidence            445689999999999999999999985321   1       12222221  011111111 127899999997543    


Q ss_pred             ---hhHHh-------hh-h------ccccccccCcEEEEEEeCCCc-CchHHHHH-HHHHHHHHHHhhhhhhhhhccccc
Q psy11649         97 ---LEVAS-------LF-S------SFSLTAQSGFTLVLMLDLSRL-NSLWTEAE-TFLAKFRAIFESNESVREKRGSFE  157 (890)
Q Consensus        97 ---~~Li~-------~~-r------~~~~~~~~ad~IIIV~DlSnp-~S~~~~L~-~wlq~I~e~~~~ll~~~~~~~~l~  157 (890)
                         ..+..       .+ .      ...+.  ++++.+++|+.+.. .++ +.+. .|+..+.                 
T Consensus       106 ~~~~~i~~~i~~~~~~~l~qr~~IaRal~~--d~~~~vlL~ldePt~~~L-~~~d~~~lk~L~-----------------  165 (418)
T 2qag_C          106 NCWQPVIDYIDSKFEDYLNAESRVNRRQMP--DNRVQCCLYFIAPSGHGL-KPLDIEFMKRLH-----------------  165 (418)
T ss_dssp             --CHHHHHHHHHHHHHHTTTSCC-CCCCCC--CC-CCEEEEECCC-CCSC-CHHHHHHHHHHT-----------------
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCeeEEEEEecCcccCC-CHHHHHHHHHHh-----------------
Confidence               12211       11 0      01112  35555555555442 344 3333 3444321                 


Q ss_pred             cccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        158 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       158 ~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                                     . ++|+|+|+||+|+..   ..+.......++..+..+|+.++++|++++.+++++...|...
T Consensus       166 ---------------~-~v~iIlVinK~Dll~---~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          166 ---------------E-KVNIIPLIAKADTLT---PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             ---------------T-TSEEEEEEESTTSSC---HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             ---------------c-cCcEEEEEEcccCcc---HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence                           1 589999999999862   1222222367888888899999999999999998765555443

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.02  E-value=6.4e-10  Score=125.71  Aligned_cols=116  Identities=16%  Similarity=0.165  Sum_probs=85.3

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCC----------cCchHHHHHHHHHHHHHHHhhhhhhhhh
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVREK  152 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSn----------p~S~~~~L~~wlq~I~e~~~~ll~~~~~  152 (890)
                      ..++||||+|+++++.++..|    ++  +++++|+|||+|+          ..+| +.+..|++.+...          
T Consensus       217 v~l~iwDtaGQe~~r~~w~~y----f~--~a~~iIfV~dis~ydq~l~ed~~~ns~-~e~~~~~~~i~~~----------  279 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQC----FN--DVTAIIFVVASSSYNMVIREDNQTNRL-QEALNLFKSIWNN----------  279 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGG----TT--TCCEEEEEEETTGGGCBCTTTSCSBHH-HHHHHHHHHHHTC----------
T ss_pred             ccceecccchhhhhhhhhHhh----cc--CCCEEEEEEECcccccccccccccchH-HHHHHHHHHHHhc----------
Confidence            589999999999999999888    33  6999999999999          7787 6666676644321          


Q ss_pred             ccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhh---h---------------------------hHHH
Q psy11649        153 RGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKR---I---------------------------AVQC  202 (890)
Q Consensus       153 ~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~---~---------------------------i~~~  202 (890)
                                        ....++|++|||||+|+..     ++.   .                           ..+.
T Consensus       280 ------------------~~~~~~piiLvgNK~DL~~-----~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~  336 (402)
T 1azs_C          280 ------------------RWLRTISVILFLNKQDLLA-----EKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTR  336 (402)
T ss_dssp             ------------------TTCSSCCEEEEEECHHHHH-----HHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHH
T ss_pred             ------------------ccCCCCeEEEEEEChhhhh-----hhhcccccchhhccccccccccccccccccCCcccHHH
Confidence                              0112589999999999852     111   0                           1234


Q ss_pred             HHHHH-----HH--------cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        203 LRYLA-----HV--------NGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       203 lr~la-----~~--------~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +..++     ..        .++.+++|||+++.||+.+++.+...+..
T Consensus       337 a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~  385 (402)
T 1azs_C          337 AKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence            44443     22        25667899999999999999988877643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.00  E-value=1.3e-09  Score=111.74  Aligned_cols=57  Identities=11%  Similarity=0.058  Sum_probs=43.5

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.|.++|+||+|+..     .+......+..++..+  +++++++||++|.|++++++.|...+
T Consensus       164 ~~~~iiv~NK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          164 KTADLIVINKIDLAD-----AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             TTCSEEEEECGGGHH-----HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCc-----hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            467899999999842     2223345566666654  67899999999999999999998765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.97  E-value=2.4e-09  Score=118.83  Aligned_cols=101  Identities=13%  Similarity=-0.070  Sum_probs=59.4

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  162 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~  162 (890)
                      ..+.++||+|...-...+  ..       .+|++++|+|.+++...        +.+..   .                 
T Consensus       167 ~~~iliDT~Gi~~~~~~l--~~-------~~d~vl~V~d~~~~~~~--------~~i~~---~-----------------  209 (349)
T 2www_A          167 YDIILIETVGVGQSEFAV--AD-------MVDMFVLLLPPAGGDEL--------QGIKR---G-----------------  209 (349)
T ss_dssp             CSEEEEECCCC--CHHHH--HT-------TCSEEEEEECCC---------------------------------------
T ss_pred             CCEEEEECCCcchhhhhH--Hh-------hCCEEEEEEcCCcchhH--------HHhHH---H-----------------
Confidence            368999999963211111  11       38999999999876432        11111   0                 


Q ss_pred             ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHH----------HcCCeEEEEeccCCCCHHHHHHHH
Q psy11649        163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH----------VNGASLLFHSSLDPGLVKRTRDIL  232 (890)
Q Consensus       163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~----------~~Ga~l~etSAK~~~nId~Lk~~I  232 (890)
                              +  ...|.++|+||+|+..      ..........+..          .++.++++|||+++.|++++.+.|
T Consensus       210 --------i--l~~~~ivVlNK~Dl~~------~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I  273 (349)
T 2www_A          210 --------I--IEMADLVAVTKSDGDL------IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKM  273 (349)
T ss_dssp             -----------CCSCSEEEECCCSGGG------HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHH
T ss_pred             --------H--HhcCCEEEEeeecCCC------chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHH
Confidence                    0  1358899999999852      1111111222221          224678999999999999999999


Q ss_pred             HHHH
Q psy11649        233 NHYA  236 (890)
Q Consensus       233 ~~~l  236 (890)
                      ...+
T Consensus       274 ~~~~  277 (349)
T 2www_A          274 KDFQ  277 (349)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.95  E-value=3e-09  Score=130.76  Aligned_cols=115  Identities=10%  Similarity=0.040  Sum_probs=76.8

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------------------CCCCCccceeEEEEEEec-------------cccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------TPKPTLALEYIYARKSGK-------------TVMK   82 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------~~kptigvdY~f~~~~g~-------------~~~k   82 (890)
                      ...+|+|+|..|+|||||+++|+....                  ....++++...+......             ....
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            357999999999999999999986310                  011222221111111111             1113


Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  162 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~  162 (890)
                      ..++||||||+..|...+..+    ++  .+|++|+|+|+++..++ .....|.+..                       
T Consensus        98 ~~i~liDTPG~~df~~~~~~~----l~--~aD~ailVvDa~~g~~~-qt~~~~~~~~-----------------------  147 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAA----LR--VTDGALVVVDTIEGVCV-QTETVLRQAL-----------------------  147 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHH----HH--TCSEEEEEEETTTBSCH-HHHHHHHHHH-----------------------
T ss_pred             ceEEEEECcCchhhHHHHHHH----HH--hCCEEEEEEeCCCCCCH-HHHHHHHHHH-----------------------
Confidence            489999999999987777666    22  49999999999998887 4544454321                       


Q ss_pred             ccccccccccCCCCcEEEEeecccCC
Q psy11649        163 DEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       163 ~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                                ..++|+++|+||+|+.
T Consensus       148 ----------~~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          148 ----------GERIKPVVVINKVDRA  163 (842)
T ss_dssp             ----------HTTCEEEEEEECHHHH
T ss_pred             ----------HcCCCeEEEEECCCcc
Confidence                      1268999999999985

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.95  E-value=1.4e-09  Score=121.55  Aligned_cols=122  Identities=13%  Similarity=0.084  Sum_probs=78.1

Q ss_pred             ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCC----------cCchHHHHHHHHHHHHHHHhhhhhhhh
Q psy11649         82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVRE  151 (890)
Q Consensus        82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSn----------p~S~~~~L~~wlq~I~e~~~~ll~~~~  151 (890)
                      ...++|||++|+++++.++..+    ++  +++++|+|+|+++          ..++ .....|+..+...         
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~----f~--~~~~iIfv~dls~~dq~l~ed~~~n~~-~es~~~~~~i~~~---------  263 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFEC----FD--SVTSILFLVSSSEFDQVLMEDRQTNRL-TESLNIFETIVNN---------  263 (362)
T ss_dssp             TEEEEEEEECC-------CTTS----CT--TCCEEEEEEETTCTTCEETTEEEEEHH-HHHHHHHHHHHTC---------
T ss_pred             CeEEEEEeccchhhhhhhHHHH----hC--CCCEEEEEEECccccccccccccccHH-HHHHHHHHHHhcc---------
Confidence            3489999999999999888887    33  6999999999999          6676 4445555433221         


Q ss_pred             hccccccccccccccccccccCCCCcEEEEeecccCCCCC----------Cc-chhhhhHHHHHHHH--------H---H
Q psy11649        152 KRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL----------EP-NKKRIAVQCLRYLA--------H---V  209 (890)
Q Consensus       152 ~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~----------d~-e~r~~i~~~lr~la--------~---~  209 (890)
                                         ....++|+|||+||+|+..+-          .+ .......+++..++        .   .
T Consensus       264 -------------------~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~  324 (362)
T 1zcb_A          264 -------------------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQ  324 (362)
T ss_dssp             -------------------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC-
T ss_pred             -------------------hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCC
Confidence                               011258999999999986210          00 00013345555554        1   3


Q ss_pred             cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        210 NGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       210 ~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .++.+++|||+++.|++++++.+...+..
T Consensus       325 ~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          325 RPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             -CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            46789999999999999999998887754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.93  E-value=1.4e-09  Score=121.22  Aligned_cols=121  Identities=14%  Similarity=0.209  Sum_probs=82.6

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCC----------CcCchHHHHHHHHHHHHHHHhhhhhhhhh
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS----------RLNSLWTEAETFLAKFRAIFESNESVREK  152 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlS----------np~S~~~~L~~wlq~I~e~~~~ll~~~~~  152 (890)
                      ..++||||+|+++++.++..+    ++  +++++|+|||++          +..++ +....|++.+....         
T Consensus       183 v~l~iwDtaGQe~~r~~~~~y----~~--~~~~iI~v~dis~ydq~l~e~~~~~s~-~~~~~~~~~i~~~~---------  246 (354)
T 2xtz_A          183 EVYRLFDVGGQRNERRKWIHL----FE--GVTAVIFCAAISEYDQTLFEDEQKNRM-METKELFDWVLKQP---------  246 (354)
T ss_dssp             -EEEEEEECCSTTGGGGTGGG----CT--TEEEEEEEEEGGGTTCBCSSCTTSBHH-HHHHHHHHHHHTCG---------
T ss_pred             eeeEEEECCCchhhhHHHHHH----hC--CCCEEEEEEECcccccccccccchhHH-HHHHHHHHHHHhcc---------
Confidence            489999999999999999888    33  699999999999          67776 55555555432210         


Q ss_pred             ccccccccccccccccccccCCCCcEEEEeecccCCCC-CC--c--------c-----hhhhhHHHHHHHHHH-------
Q psy11649        153 RGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN-LE--P--------N-----KKRIAVQCLRYLAHV-------  209 (890)
Q Consensus       153 ~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d-~d--~--------e-----~r~~i~~~lr~la~~-------  209 (890)
                                         ...++|++|||||+|+.++ ..  +        +     ......+++.+++..       
T Consensus       247 -------------------~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~  307 (354)
T 2xtz_A          247 -------------------CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYY  307 (354)
T ss_dssp             -------------------GGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------ccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhh
Confidence                               1125899999999998521 00  0        0     000123445555332       


Q ss_pred             ---------cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        210 ---------NGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       210 ---------~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                               ..+.+++|||+++.||+++++.+...+..
T Consensus       308 ~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          308 QNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR  345 (354)
T ss_dssp             HTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence                     12346899999999999999988877643

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.89  E-value=2.7e-09  Score=117.89  Aligned_cols=104  Identities=11%  Similarity=-0.020  Sum_probs=63.0

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  162 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~  162 (890)
                      ..+.||||||.......+..         .+|++++|+|.+....+        +.+....                   
T Consensus       149 ~~i~liDTpG~~~~~~~~~~---------~aD~vl~Vvd~~~~~~~--------~~l~~~~-------------------  192 (341)
T 2p67_A          149 YDVVIVETVGVGQSETEVAR---------MVDCFISLQIAGGGDDL--------QGIKKGL-------------------  192 (341)
T ss_dssp             CSEEEEEEECCTTHHHHHHT---------TCSEEEEEECC--------------CCCCHHH-------------------
T ss_pred             CCEEEEeCCCccchHHHHHH---------hCCEEEEEEeCCccHHH--------HHHHHhh-------------------
Confidence            37999999997654433222         39999999998765332        1000000                   


Q ss_pred             ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc-------CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-------GASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~-------Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                                 .++|.++|+||+|+...   .........++.....+       ..+++++||++|.|++++.+.|...
T Consensus       193 -----------~~~p~ivv~NK~Dl~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          193 -----------MEVADLIVINKDDGDNH---TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             -----------HHHCSEEEECCCCTTCH---HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             -----------hcccCEEEEECCCCCCh---HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence                       13688999999998520   01111111233222222       4578999999999999999999887


Q ss_pred             H
Q psy11649        236 A  236 (890)
Q Consensus       236 l  236 (890)
                      +
T Consensus       259 ~  259 (341)
T 2p67_A          259 K  259 (341)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.85  E-value=1.2e-08  Score=119.87  Aligned_cols=115  Identities=19%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCccceeEEEEEEecc----------------------------
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLALEYIYARKSGKT----------------------------   79 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptigvdY~f~~~~g~~----------------------------   79 (890)
                      ....+|+|+|.+|||||||+|+|++...     ...|++.....  ...+..                            
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~--i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVA--VMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEE--EECCSSSEEECCC------------------CCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEE--EEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            3467999999999999999999998642     33344321100  000000                            


Q ss_pred             --------ccc--eEEEEEEcCCCcc-----------hhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHH
Q psy11649         80 --------VMK--DICHLWELGSGTS-----------RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAK  138 (890)
Q Consensus        80 --------~~k--~~l~IwDlpG~~~-----------~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~  138 (890)
                              ...  ..+.+|||||...           +..+...+    +.  .+|++|+|+|.+++... +....|++.
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~----l~--~aD~il~VvDa~~~~~~-~~~~~~l~~  213 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWF----AE--RVDLIILLFDAHKLEIS-DEFSEAIGA  213 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHH----HH--HCSEEEEEEETTSCCCC-HHHHHHHHH
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHH----HH--hCCEEEEEEeCCcCCCC-HHHHHHHHH
Confidence                    000  2589999999865           33444444    11  48999999999986543 445555542


Q ss_pred             HHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        139 FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       139 I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      +                                ...+.|+++|+||+|+.
T Consensus       214 l--------------------------------~~~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          214 L--------------------------------RGHEDKIRVVLNKADMV  231 (550)
T ss_dssp             T--------------------------------TTCGGGEEEEEECGGGS
T ss_pred             H--------------------------------HhcCCCEEEEEECCCcc
Confidence            2                                12357999999999986

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.83  E-value=6.4e-09  Score=107.79  Aligned_cols=115  Identities=16%  Similarity=0.173  Sum_probs=87.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ++||+.+|+..+..+.+.  -..    ...++++|+|++.+.++ +.+++|+..++.+...                   
T Consensus        64 l~iwDtaGqe~~~~l~~~--~~~----~a~~~ilv~di~~~~Sf-~~i~~~~~~i~~~~~~-------------------  117 (216)
T 4dkx_A           64 LQLWDTAGLERFRSLIPS--YIR----DSAAAVVVYDITNVNSF-QQTTKWIDDVRTERGS-------------------  117 (216)
T ss_dssp             EEEECCSCTTTCGGGHHH--HHT----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-------------------
T ss_pred             EEEEECCCchhhhhHHHH--Hhc----cccEEEEEeecchhHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            489999999877766555  122    23389999999999999 9999999887664321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       .+|+||||+|+|+...     +..-....+.||.++|+..|.||+|.
T Consensus       118 ---------------------------------~~piilVgNK~Dl~~~-----r~V~~~e~~~~a~~~~~~~~e~SAkt  159 (216)
T 4dkx_A          118 ---------------------------------DVIIMLVGNKTDLADK-----RQVSIEEGERKAKELNVMFIETSAKA  159 (216)
T ss_dssp             ---------------------------------SSEEEEEEECTTCGGG-----CCSCHHHHHHHHHHHTCEEEEEBTTT
T ss_pred             ---------------------------------CCeEEEEeeccchHhc-----CcccHHHHhhHHHHhCCeeEEEeCCC
Confidence                                             3799999999998632     11223446788999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~  571 (890)
                      +.|++.++..|...+.+..
T Consensus       160 g~nV~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          160 GYNVKQLFRRVAAALPGME  178 (216)
T ss_dssp             TBSHHHHHHHHHHHC----
T ss_pred             CcCHHHHHHHHHHHHHhhh
Confidence            9999999999999887644

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.78  E-value=2.8e-08  Score=104.14  Aligned_cols=117  Identities=11%  Similarity=-0.047  Sum_probs=67.2

Q ss_pred             EEEEEEcCCCcchhhHHhh---hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASL---FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~---~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                      .+.||||||+.........   .. ..+.  . +++|+|+|.+...+. ..+...........                 
T Consensus       110 d~iiiDtpG~~~~~~~~~l~~~~~-~~~~--~-~~iv~vvD~~~~~~~-~~~~~~~~~~~~~~-----------------  167 (262)
T 1yrb_A          110 DYVLIDTPGQMETFLFHEFGVRLM-ENLP--Y-PLVVYISDPEILKKP-NDYCFVRFFALLID-----------------  167 (262)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHH-HTSS--S-CEEEEEECGGGCCSH-HHHHHHHHHHHHHH-----------------
T ss_pred             CEEEEeCCCccchhhhhhhHHHHH-HHHh--h-ceEEeccchhhhcCH-HHHHHHHHHHHHHh-----------------
Confidence            6899999998765433211   10 1122  4 788889998765443 12221111111100                 


Q ss_pred             ccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHH-------HH-----------------HHHHcC--CeE
Q psy11649        161 TADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-------RY-----------------LAHVNG--ASL  214 (890)
Q Consensus       161 ~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~l-------r~-----------------la~~~G--a~l  214 (890)
                                 ...++|+++|+||+|+...   .......+.+       ..                 ++..++  +++
T Consensus       168 -----------~~~~~p~~iv~NK~D~~~~---~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  233 (262)
T 1yrb_A          168 -----------LRLGATTIPALNKVDLLSE---EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRV  233 (262)
T ss_dssp             -----------HHHTSCEEEEECCGGGCCH---HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             -----------cccCCCeEEEEeccccccc---ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccc
Confidence                       0125799999999998531   1010011111       01                 123443  479


Q ss_pred             EEEeccCCCCHHHHHHHHHHHH
Q psy11649        215 LFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       215 ~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +++||+++.|++++++.|...+
T Consensus       234 ~~~SA~~~~gi~~l~~~i~~~~  255 (262)
T 1yrb_A          234 LYLSAKTREGFEDLETLAYEHY  255 (262)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEecCcccHHHHHHHHHHHh
Confidence            9999999999999999998776

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.77  E-value=2.8e-08  Score=97.66  Aligned_cols=113  Identities=12%  Similarity=0.178  Sum_probs=73.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|...+..+...  .+.    ..-++|+|+|++.|.++ +.+..|+..++.+..                    
T Consensus        59 ~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  111 (183)
T 2fu5_C           59 LQIWDTAGQERFRTITTA--YYR----GAMGIMLVYDITNEKSF-DNIRNWIRNIEEHAS--------------------  111 (183)
T ss_dssp             EEEEEC---------CCT--TTT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred             EEEEcCCCChhhhhhHHH--HHh----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999998766655444  222    12378999999999987 888889877754211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-+     .-...++.+|..+|+..|.||++.
T Consensus       112 --------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~  154 (183)
T 2fu5_C          112 --------------------------------ADVEKMILGNKCDVNDKRQ-----VSKERGEKLALDYGIKFMETSAKA  154 (183)
T ss_dssp             --------------------------------TTCEEEEEEEC--CCSCCC-----SCHHHHHHHHHHHTCEEEECCC--
T ss_pred             --------------------------------CCCCEEEEEECccCCccCc-----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            1479999999999974211     112345678888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|...++.
T Consensus       155 ~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          155 NINVENAFFTLARDIKA  171 (183)
T ss_dssp             -CCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.75  E-value=3.1e-08  Score=96.50  Aligned_cols=120  Identities=18%  Similarity=0.187  Sum_probs=90.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|+..+..+...  .+..    .-++++|+|.+.|.++ +.++.|+..++.+...                  
T Consensus        57 ~~~~~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------  111 (178)
T 2hxs_A           57 TLQIWDIGGQTIGGKMLDK--YIYG----AQGVLLVYDITNYQSF-ENLEDWYTVVKKVSEE------------------  111 (178)
T ss_dssp             EEEEEECTTCCTTCTTHHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHHH------------------
T ss_pred             EEEEEECCCCccccchhhH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcc------------------
Confidence            3589999999766655544  2221    2378999999999986 8899999888776542                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                                .                      .+.| +|||+||+|+...-.     .-...++.+|..+|+..+.+|+
T Consensus       112 ----------~----------------------~~~~~iilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa  154 (178)
T 2hxs_A          112 ----------S----------------------ETQPLVALVGNKIDLEHMRT-----IKPEKHLRFCQENGFSSHFVSA  154 (178)
T ss_dssp             ----------H----------------------TCCCEEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCEEEEECT
T ss_pred             ----------c----------------------CCCCeEEEEEEccccccccc-----cCHHHHHHHHHHcCCcEEEEeC
Confidence                      0                      0234 899999999974211     1123456778889999999999


Q ss_pred             CChhhHHHHHHHHhhhhcCCCCC
Q psy11649        551 LDPGLVKRTRDILNHYAFSSHLA  573 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~fg~~~~  573 (890)
                      +.+.|++.++..|...+++.+..
T Consensus       155 ~~~~gi~~l~~~l~~~~~~~~~~  177 (178)
T 2hxs_A          155 KTGDSVFLCFQKVAAEILGIKLN  177 (178)
T ss_dssp             TTCTTHHHHHHHHHHHHTTCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999887653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.75  E-value=1.9e-08  Score=102.86  Aligned_cols=120  Identities=18%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..||+.+|+..+..+...  .+..    .-++|+|+|++.+.++-+.++.|+..++.+..                    
T Consensus        77 l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--------------------  130 (214)
T 3q3j_B           77 LSLWDTSGSPYYDNVRPL--CYSD----SDAVLLCFDISRPETVDSALKKWRTEILDYCP--------------------  130 (214)
T ss_dssp             EEEEEECCSGGGTTTGGG--GCTT----CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT--------------------
T ss_pred             EEEEECCCCHhHHHHHHH--HcCC----CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC--------------------
Confidence            589999999777666655  2332    23799999999999995568999988875311                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-c
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA-S  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA-s  544 (890)
                                                       ++|+||||||+|+..+...+.       .....+.++.+|..+|+ .
T Consensus       131 ---------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  177 (214)
T 3q3j_B          131 ---------------------------------STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI  177 (214)
T ss_dssp             ---------------------------------TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             ---------------------------------CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence                                             378999999999975422111       11234567889999999 8


Q ss_pred             eeEeccCChhh-HHHHHHHHhhhhcCCC
Q psy11649        545 LLFHSSLDPGL-VKRTRDILNHYAFSSH  571 (890)
Q Consensus       545 L~ftS~K~~~n-~~~l~kyi~hr~fg~~  571 (890)
                      .|.||+|.+.| ++.++..|...++...
T Consensus       178 ~~e~SA~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          178 YLEGSAFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             EEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred             EEEeccCCCcccHHHHHHHHHHHHhccC
Confidence            99999999998 9999999999887643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.74  E-value=1.8e-08  Score=96.95  Aligned_cols=116  Identities=13%  Similarity=0.153  Sum_probs=86.5

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++++|+|.+.|.++ +.+..|+..+..+..                   
T Consensus        53 ~~~~~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  106 (170)
T 1ek0_A           53 KFEIWDTAGQERFASLAPX--YYRN----AQAALVVYDVTKPQSF-IKARHWVKELHEQAS-------------------  106 (170)
T ss_dssp             EEEEEEECCSGGGGGGHHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEECCCChhhhhhhhh--hhcc----CcEEEEEEecCChHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3689999998776665544  2222    2378999999999887 888888877665211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|++||+||+|+...-+.  .....+..+.+|..+|+..+.+|++
T Consensus       107 ---------------------------------~~~piilv~nK~Dl~~~~~~--~~v~~~~~~~~~~~~~~~~~~~Sa~  151 (170)
T 1ek0_A          107 ---------------------------------KDIIIALVGNKIDXLQEGGE--RKVAREEGEKLAEEKGLLFFETSAK  151 (170)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGGGSSCC--CCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred             ---------------------------------CCCcEEEEEECCCccccccc--cCCCHHHHHHHHHHcCCEEEEEeCC
Confidence                                             14789999999999853211  1223445677888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++.+|...+.
T Consensus       152 ~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          152 TGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             TCTTHHHHHHHHHTTSC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999987764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.73  E-value=8.6e-08  Score=92.47  Aligned_cols=112  Identities=14%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+.    ..-++++|+|++.+.++ +.++.|+..++.+...                   
T Consensus        57 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  110 (170)
T 1z08_A           57 LAIWDTAGQERFHALGPI--YYR----DSNGAILVYDITDEDSF-QKVKNWVKELRKMLGN-------------------  110 (170)
T ss_dssp             EEEEECCCC-------CC--SST----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHGG-------------------
T ss_pred             EEEEECCCcHhhhhhHHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            589999998766655444  222    12378999999999987 8888998887654321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       ++|++||+||+|+...-.-     -...++.+|..+|+..+.+|++.
T Consensus       111 ---------------------------------~~piilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~~  152 (170)
T 1z08_A          111 ---------------------------------EICLCIVGNKIDLEKERHV-----SIQEAESYAESVGAKHYHTSAKQ  152 (170)
T ss_dssp             ---------------------------------GSEEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             ---------------------------------CCeEEEEEECccccccccc-----CHHHHHHHHHHcCCeEEEecCCC
Confidence                                             3789999999999742111     12345678888999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|...+.
T Consensus       153 ~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          153 NKGIEELFLDLCKRMI  168 (170)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999988765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.72  E-value=4.2e-08  Score=97.81  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+..    .-++|+|+|++.+.++-+..+.|+..++.+..                    
T Consensus        73 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------------------  126 (194)
T 3reg_A           73 LHLWDTAGQEEYDRLRPL--SYAD----SDVVLLCFAVNNRTSFDNISTKWEPEIKHYID--------------------  126 (194)
T ss_dssp             EEEEEECCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--------------------
T ss_pred             EEEEECCCcHHHHHHhHh--hccC----CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--------------------
Confidence            589999998776665554  2222    23799999999999984434888887764211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc-eeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-LLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs-L~ftS~K  551 (890)
                                                       ++|+||||||+|+..+   +........++.+|..+|+. .+.||++
T Consensus       127 ---------------------------------~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  170 (194)
T 3reg_A          127 ---------------------------------TAKTVLVGLKVDLRKD---GSDDVTKQEGDDLCQKLGCVAYIEASSV  170 (194)
T ss_dssp             ---------------------------------TSEEEEEEECGGGCCT---TTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred             ---------------------------------CCCEEEEEEChhhccC---CCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence                                             3789999999999742   11222334567788999999 9999999


Q ss_pred             ChhhHHHHHHHHhhhhcCC
Q psy11649        552 DPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~  570 (890)
                      .+.|++.++..|...++.-
T Consensus       171 ~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          171 AKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             TTBSHHHHHHHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHHHhc
Confidence            9999999999999988764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.71  E-value=5.9e-08  Score=107.23  Aligned_cols=102  Identities=10%  Similarity=-0.084  Sum_probs=60.9

Q ss_pred             eEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649         83 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  162 (890)
Q Consensus        83 ~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~  162 (890)
                      ..+.++||+|...-...+..         .+|.+++|+|.+..+..        +.+.+..                   
T Consensus       148 ~~~iliDT~Gi~~~~~~v~~---------~~d~vl~v~d~~~~~~~--------~~i~~~i-------------------  191 (337)
T 2qm8_A          148 FDVILVETVGVGQSETAVAD---------LTDFFLVLMLPGAGDEL--------QGIKKGI-------------------  191 (337)
T ss_dssp             CCEEEEEECSSSSCHHHHHT---------TSSEEEEEECSCC--------------CCTTH-------------------
T ss_pred             CCEEEEECCCCCcchhhHHh---------hCCEEEEEEcCCCcccH--------HHHHHHH-------------------
Confidence            37899999997542222211         38999999998654321        1010000                   


Q ss_pred             ccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH----------cCCeEEEEeccCCCCHHHHHHHH
Q psy11649        163 DEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV----------NGASLLFHSSLDPGLVKRTRDIL  232 (890)
Q Consensus       163 ~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~----------~Ga~l~etSAK~~~nId~Lk~~I  232 (890)
                                 ..+|.++|.||+|+..     .........++++..          ++.+++++||+++.|+++|.+.|
T Consensus       192 -----------~~~~~ivvlNK~Dl~~-----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I  255 (337)
T 2qm8_A          192 -----------FELADMIAVNKADDGD-----GERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRI  255 (337)
T ss_dssp             -----------HHHCSEEEEECCSTTC-----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHH
T ss_pred             -----------hccccEEEEEchhccC-----chhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHH
Confidence                       0245677889999742     122222222333221          14578999999999999999999


Q ss_pred             HHHH
Q psy11649        233 NHYA  236 (890)
Q Consensus       233 ~~~l  236 (890)
                      ....
T Consensus       256 ~~~~  259 (337)
T 2qm8_A          256 EDHR  259 (337)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.71  E-value=2.4e-08  Score=120.70  Aligned_cols=107  Identities=16%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             EEEEEEcCCCcc-------------hhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhh
Q psy11649         84 ICHLWELGSGTS-------------RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESV  149 (890)
Q Consensus        84 ~l~IwDlpG~~~-------------~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~  149 (890)
                      .+.++||||..+             +..++..| .      ..+|++++|+|.++...- .....+++.           
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~------~~aDlIL~VVDAs~~~~~-~d~l~ll~~-----------  212 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT------KENCLILAVSPANSDLAN-SDALKIAKE-----------  212 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT------STTEEEEEEEETTSCSSS-CHHHHHHHH-----------
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh------cCCcEEEEEEcCCCCcch-hHHHHHHHH-----------
Confidence            578999999654             12233333 2      148999999999986543 111122221           


Q ss_pred             hhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHH-H-HHHHcC-CeEEEEeccCCCCHH
Q psy11649        150 REKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-Y-LAHVNG-ASLLFHSSLDPGLVK  226 (890)
Q Consensus       150 ~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr-~-la~~~G-a~l~etSAK~~~nId  226 (890)
                                           +...+.|+++|.||+|+.....   .  .....+ + +...+| +.++.+||+++.|++
T Consensus       213 ---------------------L~~~g~pvIlVlNKiDlv~~~~---~--~~~il~~~~~~l~lg~~~VV~iSA~~G~Gvd  266 (772)
T 3zvr_A          213 ---------------------VDPQGQRTIGVITKLDLMDEGT---D--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKK  266 (772)
T ss_dssp             ---------------------HCTTCSSEEEEEECTTSSCTTC---C--SHHHHTTCSSCCSSCEEECCCCCCEESSSSE
T ss_pred             ---------------------HHhcCCCEEEEEeCcccCCcch---h--hHHHHHHHhhhhhccCCceEEecccccccch
Confidence                                 2234789999999999973211   1  111111 0 001123 357889999999999


Q ss_pred             HHHHHHHH
Q psy11649        227 RTRDILNH  234 (890)
Q Consensus       227 ~Lk~~I~~  234 (890)
                      .|.+.|..
T Consensus       267 eL~eaI~~  274 (772)
T 3zvr_A          267 DITAALAA  274 (772)
T ss_dssp             EHHHHHHH
T ss_pred             hHHHHHHH
Confidence            99999876

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.71  E-value=2.9e-08  Score=96.99  Aligned_cols=116  Identities=15%  Similarity=0.195  Sum_probs=86.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.++.|+..++.+..                   
T Consensus        62 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  115 (181)
T 2efe_B           62 KFEIWDTAGQERYHSLAPM--YYRG----AAAAIIVFDVTNQASF-ERAKKWVQELQAQGN-------------------  115 (181)
T ss_dssp             EEEEEECCCSGGGGGGTHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEeCCCChhhhhhhHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998766665554  2222    2378999999999987 888888877655211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|++||+||+|+...-+     .-...++.+|..+|+..|.+|++
T Consensus       116 ---------------------------------~~~p~i~v~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  157 (181)
T 2efe_B          116 ---------------------------------PNMVMALAGNKSDLLDARK-----VTAEDAQTYAQENGLFFMETSAK  157 (181)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCTTTCC-----SCHHHHHHHHHHTTCEEEECCSS
T ss_pred             ---------------------------------CCCcEEEEEECCccccccc-----CCHHHHHHHHHHcCCEEEEEECC
Confidence                                             0378999999999964211     11235667888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCC
Q psy11649        552 DPGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~~  571 (890)
                      .+.|++.++.+|...+...+
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          158 TATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SCTTHHHHHHHHHHTCC---
T ss_pred             CCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999887643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.71  E-value=7.8e-08  Score=92.41  Aligned_cols=113  Identities=13%  Similarity=0.139  Sum_probs=84.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.++.|+..+..+..                   
T Consensus        56 ~~~~~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  109 (170)
T 1r2q_A           56 KFEIWDTAGQERYHSLAPM--YYRG----AQAAIVVYDITNEESF-ARAKNWVKELQRQAS-------------------  109 (170)
T ss_dssp             EEEEEEECCSGGGGGGHHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEeCCCcHHhhhhhHH--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998776665444  2221    2378999999999987 888888876654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|+||||||+|+...-...     ...++.+|..+|+..+.+|++
T Consensus       110 ---------------------------------~~~~iilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~~~~~~~Sa~  151 (170)
T 1r2q_A          110 ---------------------------------PNIVIALSGNKADLANKRAVD-----FQEAQSYADDNSLLFMETSAK  151 (170)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHHTTCEEEECCTT
T ss_pred             ---------------------------------CCCcEEEEEECccCccccccC-----HHHHHHHHHHcCCeEEEEeCC
Confidence                                             147999999999996421111     234567888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++.+|...+.
T Consensus       152 ~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          152 TSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TCTTHHHHHHHHHHTSC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.70  E-value=2.2e-08  Score=97.32  Aligned_cols=113  Identities=17%  Similarity=0.199  Sum_probs=85.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.++.|+..++.+..                   
T Consensus        65 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  118 (179)
T 1z0f_A           65 KLQIWDTAGQERFRAVTRS--YYRG----AAGALMVYDITRRSTY-NHLSSWLTDARNLTN-------------------  118 (179)
T ss_dssp             EEEEEECTTGGGTCHHHHH--HHHT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEECCCChHhhhhHHH--Hhcc----CCEEEEEEeCcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998766655444  2222    2379999999999887 888888877654211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|++||+||+|+...-+     .-...++.+|..+|+..+.+|++
T Consensus       119 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  160 (179)
T 1z0f_A          119 ---------------------------------PNTVIILIGNKADLEAQRD-----VTYEEAKQFAEENGLLFLEASAK  160 (179)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECCTT
T ss_pred             ---------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHHcCCEEEEEeCC
Confidence                                             1479999999999964211     11235677888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++++|...++
T Consensus       161 ~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          161 TGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             TCTTHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.70  E-value=9.2e-08  Score=93.08  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=85.4

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++++|+|.+.|.++ +.+..|+..++.+..                   
T Consensus        59 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  112 (181)
T 3tw8_B           59 KLQIWDTAGQERFRTITST--YYRG----THGVIVVYDVTSAESF-VNVKRWLHEINQNCD-------------------  112 (181)
T ss_dssp             EEEEEEETTGGGCSSCCGG--GGTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHCT-------------------
T ss_pred             EEEEEcCCCchhhhhhHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            3689999998766655544  2222    2379999999999887 778888877754111                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        ++|+|||+||+|+...-.     .-...++.+|..+|+.++.+|++
T Consensus       113 ----------------------------------~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  153 (181)
T 3tw8_B          113 ----------------------------------DVCRILVGNKNDDPERKV-----VETEDAYKFAGQMGIQLFETSAK  153 (181)
T ss_dssp             ----------------------------------TSEEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCCEEECBTT
T ss_pred             ----------------------------------CCCEEEEEECCCCchhcc-----cCHHHHHHHHHHcCCeEEEEECC
Confidence                                              378999999999864211     11234678899999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.+++.|...+..
T Consensus       154 ~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999887754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.70  E-value=5.1e-08  Score=95.58  Aligned_cols=116  Identities=15%  Similarity=0.090  Sum_probs=86.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+.    ..-++++|+|++.|.++ +.+..|+..+..+...                   
T Consensus        56 ~~l~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  109 (181)
T 3t5g_A           56 LQLVDTAGQDEYSIFPQT--YSI----DINGYILVYSVTSIKSF-EVIKVIHGKLLDMVGK-------------------  109 (181)
T ss_dssp             EEEEECCCCCTTCCCCGG--GTT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHC---------------------
T ss_pred             EEEEeCCCchhhhHHHHH--HHh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            489999998766554444  122    12378999999999988 8888898766553321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-     ......++.+|..+|+..+.+|++.
T Consensus       110 --------------------------------~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (181)
T 3t5g_A          110 --------------------------------VQIPIMLVGNKKDLHMER-----VISYEEGKALAESWNAAFLESSAKE  152 (181)
T ss_dssp             ----------------------------------CCEEEEEECTTCTTTC-----CSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred             --------------------------------CCCCEEEEEECccchhcc-----eecHHHHHHHHHHhCCcEEEEecCC
Confidence                                            147999999999985321     1223457788999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~  571 (890)
                      +.|++.++..|...+....
T Consensus       153 ~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          153 NQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTC-
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999988644

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.69  E-value=8e-08  Score=93.75  Aligned_cols=113  Identities=16%  Similarity=0.185  Sum_probs=80.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|++.|.++ +.++.|+..++.+..                    
T Consensus        62 ~~~~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  114 (180)
T 2g6b_A           62 LQMWDTAGQERFRSVTHA--YYRD----AHALLLLYDVTNKASF-DNIQAWLTEIHEYAQ--------------------  114 (180)
T ss_dssp             EEEEECCCC--------C--CGGG----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEeCCCcHHHHHHHHH--HccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            589999998776665444  2222    2378999999999987 888888877654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|++||+||+|+...-.     .....++.+|..+|+..+.||++.
T Consensus       115 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~  157 (180)
T 2g6b_A          115 --------------------------------HDVALMLLGNKVDSAHERV-----VKREDGEKLAKEYGLPFMETSAKT  157 (180)
T ss_dssp             --------------------------------TTCEEEEEEECCSTTSCCC-----SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             --------------------------------CCCcEEEEEECcccCcccc-----cCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            1479999999999974211     112334667888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|.+.+..
T Consensus       158 ~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          158 GLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.69  E-value=4.2e-08  Score=97.91  Aligned_cols=114  Identities=12%  Similarity=0.159  Sum_probs=85.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.++.|+..++.+..                   
T Consensus        73 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~iilV~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  126 (192)
T 2fg5_A           73 KFLIWDTAGQERFHSLAPM--YYRG----SAAAVIVYDITKQDSF-YTLKKWVKELKEHGP-------------------  126 (192)
T ss_dssp             EEEEEEECCSGGGGGGTHH--HHTT----CSEEEEEEETTCTHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEcCCCchhhHhhhHH--hhcc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            3589999998766655544  2222    2378999999999987 888889877654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|++||+||+|+...-+     .-...++.+|..+|+..|.+|++
T Consensus       127 ---------------------------------~~~piiiv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~  168 (192)
T 2fg5_A          127 ---------------------------------ENIVMAIAGNKCDLSDIRE-----VPLKDAKEYAESIGAIVVETSAK  168 (192)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHTTTCEEEECBTT
T ss_pred             ---------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHHcCCEEEEEeCC
Confidence                                             1479999999999963211     11234677888999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.+++.|...+..
T Consensus       169 ~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          169 NAINIEELFQGISRQIPP  186 (192)
T ss_dssp             TTBSHHHHHHHHHHTCC-
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            999999999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=98.68  E-value=4.8e-08  Score=96.96  Aligned_cols=113  Identities=17%  Similarity=0.208  Sum_probs=85.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++++|+|.+.+.++ +.++.|+..++.+..                   
T Consensus        72 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  125 (189)
T 2gf9_A           72 KLQIWDTAGQERYRTITTA--YYRG----AMGFLLMYDIANQESF-AAVQDWATQIKTYSW-------------------  125 (189)
T ss_dssp             EEEEEECCSCCSSCCSGGG--GGTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEeCCCcHHHhhhHHH--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998766665544  2222    2378999999999987 888889877655211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|+|||+||+|+...-.     .....++.+|..+|+..|.+|++
T Consensus       126 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  167 (189)
T 2gf9_A          126 ---------------------------------DNAQVILVGNKCDLEDERV-----VPAEDGRRLADDLGFEFFEASAK  167 (189)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEECBTT
T ss_pred             ---------------------------------CCCCEEEEEECcccccccC-----CCHHHHHHHHHHcCCeEEEEECC
Confidence                                             1378999999999974211     11245677888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++.+|...+.
T Consensus       168 ~g~gi~~l~~~l~~~i~  184 (189)
T 2gf9_A          168 ENINVKQVFERLVDVIC  184 (189)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.67  E-value=1.4e-08  Score=102.07  Aligned_cols=117  Identities=18%  Similarity=0.194  Sum_probs=85.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.++.|+..++....                    
T Consensus        79 l~i~Dt~G~~~~~~~~~~--~~~~----~d~iilv~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  131 (199)
T 2p5s_A           79 LQLWDTAGQERFRSIAKS--YFRK----ADGVLLLYDVTCEKSF-LNIREWVDMIEDAAH--------------------  131 (199)
T ss_dssp             EEEEECTTCTTCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHC---------------------
T ss_pred             EEEEECCCCcchhhhHHH--HHhh----CCEEEEEEECCChHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999998776665444  2222    2379999999999987 888889876654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-HHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-KKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      .++|+|||+||+|+......+ ........++.+|..+|+..+.||+|
T Consensus       132 --------------------------------~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~  179 (199)
T 2p5s_A          132 --------------------------------ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK  179 (199)
T ss_dssp             ----------------------------------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred             --------------------------------CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence                                            137899999999996321111 11223455678888999999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++.+|...+.
T Consensus       180 ~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          180 DGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             TCTTHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=98.66  E-value=3.1e-08  Score=98.66  Aligned_cols=114  Identities=15%  Similarity=0.167  Sum_probs=85.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.+..|+..++.+..                   
T Consensus        71 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~l~~i~~~~~-------------------  124 (191)
T 2a5j_A           71 KLQIWDTAGQESFRSITRS--YYRG----AAGALLVYDITRRETF-NHLTSWLEDARQHSS-------------------  124 (191)
T ss_dssp             EEEEECCTTGGGTSCCCHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEECCCchhhhhhHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998766655444  2221    2378999999999987 788888877654211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|++||+||+|+...-+     .-...++.+|..+|+..+.||++
T Consensus       125 ---------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~  166 (191)
T 2a5j_A          125 ---------------------------------SNMVIMLIGNKSDLESRRD-----VKREEGEAFAREHGLIFMETSAK  166 (191)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEEECTT
T ss_pred             ---------------------------------CCCCEEEEEECcccCCccc-----cCHHHHHHHHHHcCCEEEEEeCC
Confidence                                             1479999999999964211     11234567888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...++.
T Consensus       167 ~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999888753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.66  E-value=4.7e-08  Score=96.10  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=86.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++|+|+|.+.|.++ +.+..|+..+..+...                  
T Consensus        71 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------  125 (195)
T 3bc1_A           71 HLQLWDTAGLERFRSLTTA--FFRD----AMGFLLLFDLTNEQSF-LNVRNWISQLQMHAYS------------------  125 (195)
T ss_dssp             EEEEEEECCSGGGHHHHHH--TTTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSSS------------------
T ss_pred             EEEEEeCCCcHHHHHHHHH--HHcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence            4689999999776665444  2222    2378999999999987 7788888776653210                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|+|||+||+|+...-.     .....++.+|..+|+..+.+|++
T Consensus       126 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A          126 ---------------------------------ENPDIVLCGNKSDLEDQRA-----VKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             ---------------------------------SSCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCCEEECCTT
T ss_pred             ---------------------------------CCCCEEEEEECcccccccc-----cCHHHHHHHHHHcCCCEEEEECC
Confidence                                             1479999999999964211     11344677888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...+..
T Consensus       168 ~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.65  E-value=1.2e-07  Score=94.08  Aligned_cols=114  Identities=14%  Similarity=0.173  Sum_probs=86.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.++.|+..++.+..                   
T Consensus        66 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  119 (196)
T 3tkl_A           66 KLQIWDTAGQERFRTITSS--YYRG----AHGIIVVYDVTDQESF-NNVKQWLQEIDRYAS-------------------  119 (196)
T ss_dssp             EEEEEEECCSGGGCTTHHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEECCCcHhhhhhHHH--HHhh----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3689999998766655544  2222    2379999999999987 888889887754211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|+|||+||+|+...-..     -...++.+|..+|+..+.+|++
T Consensus       120 ---------------------------------~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~  161 (196)
T 3tkl_A          120 ---------------------------------ENVNKLLVGNKCDLTTKKVV-----DYTTAKEFADSLGIPFLETSAK  161 (196)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCTTTCCS-----CHHHHHHHHHHTTCCEEEECTT
T ss_pred             ---------------------------------CCCCEEEEEECccccccccc-----CHHHHHHHHHHcCCcEEEEeCC
Confidence                                             14789999999998743111     1234678899999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...+..
T Consensus       162 ~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988875

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.65  E-value=5.9e-08  Score=95.43  Aligned_cols=114  Identities=17%  Similarity=0.155  Sum_probs=85.8

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|.+.|.++ +.+..|+..++.+..                   
T Consensus        60 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  113 (186)
T 2bme_A           60 KLQIWDTAGQERFRSVTRS--YYRG----AAGALLVYDITSRETY-NALTNWLTDARMLAS-------------------  113 (186)
T ss_dssp             EEEEEEECCSGGGHHHHHT--TSTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEeCCCcHHHHHHHHH--HHhc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998776665444  2222    2379999999999987 888888877654211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|++||+||+|+...-+-     -...++.+|..+|...+.||++
T Consensus       114 ---------------------------------~~~piilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~  155 (186)
T 2bme_A          114 ---------------------------------QNIVIILCGNKKDLDADREV-----TFLEASRFAQENELMFLETSAL  155 (186)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEECCTT
T ss_pred             ---------------------------------CCCcEEEEEECccccccccc-----CHHHHHHHHHHcCCEEEEecCC
Confidence                                             14799999999999632111     1234567888999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...++.
T Consensus       156 ~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          156 TGENVEEAFVQCARKILN  173 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.64  E-value=5.9e-08  Score=95.32  Aligned_cols=113  Identities=13%  Similarity=0.117  Sum_probs=85.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+..    .-++++|+|++.+.++ +.++.|+..+..+...                   
T Consensus        68 l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  121 (183)
T 3kkq_A           68 LDVLDTAGQEEFSAMREQ--YMRT----GDGFLIVYSVTDKASF-EHVDRFHQLILRVKDR-------------------  121 (183)
T ss_dssp             EEEEECCSCGGGCSSHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTS-------------------
T ss_pred             EEEEECCCchhhHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            578999998766665554  2222    2378999999999987 8888998877653321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC-
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL-  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K-  551 (890)
                                                      .++|+|||+||+|+...-.     .-...++.+|..+|+..+.||++ 
T Consensus       122 --------------------------------~~~p~ilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~  164 (183)
T 3kkq_A          122 --------------------------------ESFPMILVANKVDLMHLRK-----VTRDQGKEMATKYNIPYIETSAKD  164 (183)
T ss_dssp             --------------------------------SCCCEEEEEECTTCSTTCC-----SCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred             --------------------------------CCCcEEEEEECCCchhccC-----cCHHHHHHHHHHhCCeEEEeccCC
Confidence                                            1479999999999874211     11234678888999999999999 


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++..|...+.
T Consensus       165 ~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          165 PPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             SCBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999987753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.64  E-value=3.4e-08  Score=95.15  Aligned_cols=111  Identities=14%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+.    ..-++++|+|++.+.++ +.++.|+..++.+..                    
T Consensus        54 ~~l~D~~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  106 (170)
T 1g16_A           54 LQIWDTAGQERFRTITTA--YYR----GAMGIILVYDITDERTF-TNIKQWFKTVNEHAN--------------------  106 (170)
T ss_dssp             EEEECCTTGGGTSCCCHH--HHT----TEEEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEeCCCChhhhhhHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999998665554443  122    23379999999999987 888889877765321                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|++||+||+|+...-      .....++.+|..+|+..+.+|++.
T Consensus       107 --------------------------------~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~  148 (170)
T 1g16_A          107 --------------------------------DEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKN  148 (170)
T ss_dssp             --------------------------------TTCEEEEEEECTTCTTCC------SCHHHHHHHHHHHTCCEEECBTTT
T ss_pred             --------------------------------CCCcEEEEEECccCCcCc------cCHHHHHHHHHHcCCeEEEEECCC
Confidence                                            147899999999994211      112345677888899999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|...+.
T Consensus       149 ~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998775

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.63  E-value=2.1e-07  Score=92.43  Aligned_cols=124  Identities=13%  Similarity=0.073  Sum_probs=88.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.+..|+..+..+..-     .            
T Consensus        64 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~~-----~------------  119 (199)
T 4bas_A           64 AFTVFDMGGAKKFRGLWET--YYDN----IDAVIFVVDSSDHLRL-CVVKSEIQAMLKHEDI-----R------------  119 (199)
T ss_dssp             EEEEEEECCSGGGGGGGGG--GCTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTSHHH-----H------------
T ss_pred             EEEEEECCCCHhHHHHHHH--HHhc----CCEEEEEEECCcHHHH-HHHHHHHHHHHhChhh-----h------------
Confidence            4589999999777766655  2332    2379999999999987 7777887766543221     0            


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHH--HHHHHHHcCCceeEec
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQC--LRYLAHVNGASLLFHS  549 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~--lR~fcl~yGAsL~ftS  549 (890)
                              +..                   ....++|+|||+||+|+....+.++   +.+.  +..+|...++..|.||
T Consensus       120 --------~~~-------------------~~~~~~piilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~S  169 (199)
T 4bas_A          120 --------REL-------------------PGGGRVPFLFFANKMDAAGAKTAAE---LVEILDLTTLMGDHPFVIFASN  169 (199)
T ss_dssp             --------SBC-------------------TTSCBCCEEEEEECTTSTTCCCHHH---HHHHHTHHHHHTTSCEEEEECB
T ss_pred             --------hcc-------------------cccCCCCEEEEEECcCCCCCCCHHH---HHHHhcchhhccCCeeEEEEee
Confidence                    000                   0112589999999999986544332   2222  4455567899999999


Q ss_pred             cCChhhHHHHHHHHhhhhcC
Q psy11649        550 SLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++.+.|++.++.+|...+..
T Consensus       170 a~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          170 GLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             TTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHH
Confidence            99999999999999887754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.63  E-value=1.8e-07  Score=90.89  Aligned_cols=114  Identities=15%  Similarity=0.118  Sum_probs=84.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.+..|+..++.+..                   
T Consensus        64 ~~~~~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  117 (179)
T 2y8e_A           64 RLQLWDTAGQERFRSLIPS--YIRD----STVAVVVYDITNTNSF-HQTSKWIDDVRTERG-------------------  117 (179)
T ss_dssp             EEEEEEECCSGGGGGGSHH--HHHT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT-------------------
T ss_pred             EEEEEECCCcHHHHHHHHH--HhcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3689999998766665554  2221    2379999999999987 888888877765321                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|++||+||+|+...-+     .-....+.+|..+|+..+.+|++
T Consensus       118 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  159 (179)
T 2y8e_A          118 ---------------------------------SDVIIMLVGNKTDLSDKRQ-----VSTEEGERKAKELNVMFIETSAK  159 (179)
T ss_dssp             ---------------------------------TSSEEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTCEEEEEBTT
T ss_pred             ---------------------------------CCCcEEEEEECCcccccCc-----CCHHHHHHHHHHcCCeEEEEeCC
Confidence                                             1378999999999974211     11233566778889999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++.+|...+..
T Consensus       160 ~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          160 AGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TTBSHHHHHHHHHHTCC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999987754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.63  E-value=8.5e-08  Score=108.11  Aligned_cols=239  Identities=10%  Similarity=0.057  Sum_probs=114.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccc--------------cceEEEEEEcCCCcchh
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTV--------------MKDICHLWELGSGTSRL   97 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~--------------~k~~l~IwDlpG~~~~~   97 (890)
                      ...+|+|+|.+|||||||+|+|++...  ...|+.+++...........              ....+++|||||..+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            457899999999999999999998532  22344454443333321100              01259999999987654


Q ss_pred             h----HHhhhhccccccccCcEEEEEEeCCCcCchH---------HHHHHHHHHH--------HHHHhhhhh---hh-hh
Q psy11649         98 E----VASLFSSFSLTAQSGFTLVLMLDLSRLNSLW---------TEAETFLAKF--------RAIFESNES---VR-EK  152 (890)
Q Consensus        98 ~----Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~---------~~L~~wlq~I--------~e~~~~ll~---~~-~~  152 (890)
                      +    +...+ ...++  ++|++++|+|+++..++.         +.+.....++        ...+..+..   .. ..
T Consensus       101 s~~~glg~~~-l~~ir--~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g~~  177 (396)
T 2ohf_A          101 HNGQGLGNAF-LSHIS--ACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDK  177 (396)
T ss_dssp             ------CCHH-HHHHH--TSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC------
T ss_pred             chhhHHHHHH-HHHHH--hcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhcccch
Confidence            3    21112 00122  499999999998755431         1121111111        111111000   00 00


Q ss_pred             c------------cccccc-c-c--cccc-c-cc----ccccCCCCcEEEEeeccc--CCCCCCcchhhhhHHHHHHHHH
Q psy11649        153 R------------GSFEHF-R-T--ADEH-R-DK----GLIRTFPVPLILIGGKYD--LFENLEPNKKRIAVQCLRYLAH  208 (890)
Q Consensus       153 ~------------~~l~~~-~-~--~~~~-~-d~----~li~~l~IPiIVVgNK~D--l~~d~d~e~r~~i~~~lr~la~  208 (890)
                      .            ..+.+. . .  ..+. . +.    .+......|++.++|+.+  ...     ...-....+++++.
T Consensus       178 ~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~-----~~n~~~~~v~~~~~  252 (396)
T 2ohf_A          178 KLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR-----KKNKWLIKIKEWVD  252 (396)
T ss_dssp             --CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHH-----TCCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcc-----cccHHHHHHHHHHH
Confidence            0            001111 0 0  0000 0 00    111224589999999984  210     00112334666665


Q ss_pred             H--cCCeEEEEeccCC---------------------CCHHHHHHHHHHHHhccCcccccccCCCCcccccCCCcccccc
Q psy11649        209 V--NGASLLFHSSLDP---------------------GLVKRTRDILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASI  265 (890)
Q Consensus       209 ~--~Ga~l~etSAK~~---------------------~nId~Lk~~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I  265 (890)
                      .  .|+.++.+||+..                     .+++++.....+++-           ...  +-+.|.|..   
T Consensus       253 ~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~-----------li~--~fT~g~~ev---  316 (396)
T 2ohf_A          253 KYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQ-----------LEY--FFTAGPDEV---  316 (396)
T ss_dssp             HHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTT-----------EEE--EEEESSSEE---
T ss_pred             hhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhC-----------CEE--EECCCCCcc---
Confidence            5  3688999999853                     345555555544431           000  112333332   


Q ss_pred             ccCC-CCCCCCccccccccccccchhHHHhhcc
Q psy11649        266 EGTT-HGKDASLESGGRGFNRSRGMKFEKKRGW  297 (890)
Q Consensus       266 ~~pl-~r~~~~~~~~~~~~~~~~~~~f~~~~~w  297 (890)
                      . +. ++++++..+.+..+|.++...|.++.+|
T Consensus       317 r-awti~~g~ta~~aAg~IH~D~~~gFi~Aev~  348 (396)
T 2ohf_A          317 R-AWTIRKGTKAPQAAGKIHTDFEKGFIMAEVM  348 (396)
T ss_dssp             E-EEEEETTCBHHHHHHTTCTHHHHHEEEEEEE
T ss_pred             e-eEEecCCCcHHHHHhhhHHHHHhcceEEEEc
Confidence            1 22 5678888899999999999999999988

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.63  E-value=7.1e-08  Score=97.97  Aligned_cols=113  Identities=18%  Similarity=0.184  Sum_probs=85.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.++.|+..++.+..                    
T Consensus        77 l~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~~~--------------------  129 (201)
T 2ew1_A           77 LQIWDTAGQERFRSITQS--YYRS----ANALILTYDITCEESF-RCLPEWLREIEQYAS--------------------  129 (201)
T ss_dssp             EEEEEECCSGGGHHHHGG--GSTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCcHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999999766655444  2322    2379999999999987 888899877654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+||||||+|+...-+     .-.+.++.+|..+|...|.||++.
T Consensus       130 --------------------------------~~~piilv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~  172 (201)
T 2ew1_A          130 --------------------------------NKVITVLVGNKIDLAERRE-----VSQQRAEEFSEAQDMYYLETSAKE  172 (201)
T ss_dssp             --------------------------------TTCEEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             --------------------------------CCCCEEEEEECCCCccccc-----cCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            1478999999999963211     112345677888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|...++.
T Consensus       173 g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          173 SDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.63  E-value=1.4e-07  Score=90.70  Aligned_cols=113  Identities=19%  Similarity=0.181  Sum_probs=75.8

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.++.|+..+..+..                   
T Consensus        50 ~~~i~D~~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  103 (166)
T 3q72_A           50 SLMVYDIWEQDGGRWLPGH--CMAM----GDAYVIVYSVTDKGSF-EKASELRVQLRRARQ-------------------  103 (166)
T ss_dssp             EEEEEECC---------------------CCEEEEEEETTCHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred             EEEEEECCCCccchhhhhh--hhhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3479999998776655554  2221    2378999999999987 888888876654211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      ..++|+|||+||+|+...-+     .-....+.+|..+|+..+.||++
T Consensus       104 --------------------------------~~~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  146 (166)
T 3q72_A          104 --------------------------------TDDVPIILVGNKSDLVRSRE-----VSVDEGRACAVVFDCKFIETSAA  146 (166)
T ss_dssp             ----------------------------------CCCEEEEEECTTCCSSCC-----SCHHHHHHHHHHTTCEEEECBGG
T ss_pred             --------------------------------CCCCCEEEEEeccccccccc-----cCHHHHHHHHHHhCCcEEEeccC
Confidence                                            01479999999999974321     11233577889999999999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.|++.++..|...+
T Consensus       147 ~~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          147 LHHNVQALFEGVVRQI  162 (166)
T ss_dssp             GTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998765

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.63  E-value=2.1e-07  Score=93.55  Aligned_cols=116  Identities=19%  Similarity=0.148  Sum_probs=86.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.+..|+..+..+...                   
T Consensus        74 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  127 (201)
T 3oes_A           74 LHLVDTAGQDEYSILPYS--FIIG----VHGYVLVYSVTSLHSF-QVIESLYQKLHEGHGK-------------------  127 (201)
T ss_dssp             EEEEEECCCCTTCCCCGG--GTTT----CCEEEEEEETTCHHHH-HHHHHHHHHHHC-----------------------
T ss_pred             EEEEECCCccchHHHHHH--HHhc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            589999998766665544  2222    2379999999999987 8888888776653221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-+     .-...++.+|..+|+..|.+|++.
T Consensus       128 --------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~  170 (201)
T 3oes_A          128 --------------------------------TRVPVVLVGNKADLSPERE-----VQAVEGKKLAESWGATFMESSARE  170 (201)
T ss_dssp             ---------------------------------CCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEECCTTC
T ss_pred             --------------------------------CCCCEEEEEECccCccccc-----cCHHHHHHHHHHhCCeEEEEeCCC
Confidence                                            1489999999999874211     112345788899999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~  571 (890)
                      +.|++.++..|...+....
T Consensus       171 ~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          171 NQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHhhh
Confidence            9999999999999887643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.62  E-value=1.4e-07  Score=92.17  Aligned_cols=115  Identities=15%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.++.|+..+..+...                  
T Consensus        67 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------  121 (187)
T 2a9k_A           67 QIDILDTAGQEDYAAIRDN--YFRS----GEGFLCVFSITEMESF-AATADFREQILRVKED------------------  121 (187)
T ss_dssp             EEEEEECCCTTCCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCC------------------
T ss_pred             EEEEEECCCCcccHHHHHH--Hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence            3579999998766665554  2222    2278999999999987 8888888877664331                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|++||+||+|+...-+     .-...++.+|..+|+..|.+|++
T Consensus       122 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  163 (187)
T 2a9k_A          122 ---------------------------------ENVPFLLVGNKSDLEDKRQ-----VSVEEAKNRAEQWNVNYVETSAK  163 (187)
T ss_dssp             ---------------------------------TTCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEECCTT
T ss_pred             ---------------------------------CCCCEEEEEECccccccCc-----cCHHHHHHHHHHcCCeEEEeCCC
Confidence                                             1379999999999974211     11345677888999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++.+|...+..
T Consensus       164 ~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          164 TRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.62  E-value=9.4e-08  Score=92.04  Aligned_cols=112  Identities=11%  Similarity=0.118  Sum_probs=84.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.++.|+..++.+..                    
T Consensus        57 ~~~~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~--------------------  109 (170)
T 1z0j_A           57 FLIWDTAGLERFRALAPM--YYRG----SAAAIIVYDITKEETF-STLKNWVRELRQHGP--------------------  109 (170)
T ss_dssp             EEEEEECCSGGGGGGTHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred             EEEEcCCCchhhhcccHh--hCcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC--------------------
Confidence            579999998666655444  2222    2378999999999987 888889887765210                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|++||+||+|+...-+     .....++.+|..+|+..+.+|++.
T Consensus       110 --------------------------------~~~~iilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~  152 (170)
T 1z0j_A          110 --------------------------------PSIVVAIAGNKCDLTDVRE-----VMERDAKDYADSIHAIFVETSAKN  152 (170)
T ss_dssp             --------------------------------TTSEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             --------------------------------CCCcEEEEEECCccccccc-----cCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            0378999999999974211     123346678888999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|..++.
T Consensus       153 ~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          153 AININELFIEISRRIP  168 (170)
T ss_dssp             TBSHHHHHHHHHHHCC
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.62  E-value=1.7e-08  Score=100.56  Aligned_cols=113  Identities=15%  Similarity=0.217  Sum_probs=86.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.++.|+..++.+..                    
T Consensus        74 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  126 (191)
T 3dz8_A           74 LQIWDTAGQERYRTITTA--YYRG----AMGFILMYDITNEESF-NAVQDWATQIKTYSW--------------------  126 (191)
T ss_dssp             EEEECHHHHHHCHHHHHH--HHTT----CCEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEeCCChHHHHHHHHH--HHcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            689999998666655544  2222    2379999999999988 888999888765211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+|||+||+|+...-     ......++.+|..+|+..|.||+|.
T Consensus       127 --------------------------------~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  169 (191)
T 3dz8_A          127 --------------------------------DNAQVILVGNKCDMEEER-----VVPTEKGQLLAEQLGFDFFEASAKE  169 (191)
T ss_dssp             --------------------------------TTCEEEEEEECTTCGGGC-----CSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             --------------------------------CCCCEEEEEECCCCcccc-----ccCHHHHHHHHHHcCCeEEEEECCC
Confidence                                            147999999999986321     1223456778899999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|...++.
T Consensus       170 ~~gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          170 NISVRQAFERLVDAICD  186 (191)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.61  E-value=1.3e-07  Score=94.26  Aligned_cols=114  Identities=13%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+..+   +..    .-++++|+|++.+.++ +.+..|+..++.+....                  
T Consensus        71 l~i~Dt~G~~~~~~~~~~---~~~----~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~------------------  124 (187)
T 3c5c_A           71 LRVMDTADLDTPRNCERY---LNW----AHAFLVVYSVDSRQSF-DSSSSYLELLALHAKET------------------  124 (187)
T ss_dssp             EEEEECCC---CCCTHHH---HTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHHHH------------------
T ss_pred             EEEEECCCCCcchhHHHH---Hhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhhcc------------------
Confidence            579999998766554333   221    2378999999999987 88999999888765420                  


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc-C
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS-L  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~-K  551 (890)
                                                     .-++|+||||||+|+...-.     .-...++.+|..+|+..+.||+ +
T Consensus       125 -------------------------------~~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~e~Sa~~  168 (187)
T 3c5c_A          125 -------------------------------QRSIPALLLGNKLDMAQYRQ-----VTKAEGVALAGRFGCLFFEVSACL  168 (187)
T ss_dssp             -------------------------------CCCCCEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCEEEECCSSS
T ss_pred             -------------------------------CCCCCEEEEEECcchhhcCc-----cCHHHHHHHHHHcCCcEEEEeecC
Confidence                                           01479999999999963211     1234467788889999999999 8


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++..|...+.
T Consensus       169 ~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          169 DFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             CSHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHh
Confidence            99999999999987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.60  E-value=1e-07  Score=91.18  Aligned_cols=112  Identities=18%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-.+++|+|++.+.++ +.+..|+..+.++...                   
T Consensus        53 ~~l~D~~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  106 (167)
T 1kao_A           53 LEILDTAGTEQFASMRDL--YIKN----GQGFILVYSLVNQQSF-QDIKPMRDQIIRVKRY-------------------  106 (167)
T ss_dssp             EEEEECCCTTCCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHTTT-------------------
T ss_pred             EEEEECCCchhhHHHHHH--Hhcc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            689999998776665544  2222    2378999999999987 7888887766543221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|++||+||+|+...-+     .....++.+|..+|+..+.+|++.
T Consensus       107 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~  149 (167)
T 1kao_A          107 --------------------------------EKVPVILVGNKVDLESERE-----VSSSEGRALAEEWGCPFMETSAKS  149 (167)
T ss_dssp             --------------------------------SCCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTSCEEEECTTC
T ss_pred             --------------------------------CCCCEEEEEECCccccccc-----CCHHHHHHHHHHhCCCEEEecCCC
Confidence                                            1479999999999864211     123345678888899999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++.+|...+
T Consensus       150 ~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          150 KTMVDELFAEIVRQM  164 (167)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998765

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.60  E-value=2.4e-07  Score=93.20  Aligned_cols=114  Identities=16%  Similarity=0.217  Sum_probs=86.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++|+|+|.+.|.++ +.++.|+..++.+..                   
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  111 (206)
T 2bcg_Y           58 KLQIWDTAGQERFRTITSS--YYRG----SHGIIIVYDVTDQESF-NGVKMWLQEIDRYAT-------------------  111 (206)
T ss_dssp             EEEEECCTTTTTTTCCCGG--GGTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEeCCChHHHHHHHHH--hccC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998776665554  2322    2379999999999987 888888877654211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|++||+||+|+...-.     .-...++.+|..+|+..|++|++
T Consensus       112 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  153 (206)
T 2bcg_Y          112 ---------------------------------STVLKLLVGNKCDLKDKRV-----VEYDVAKEFADANKMPFLETSAL  153 (206)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCTTTCC-----SCHHHHHHHHHHTTCCEEECCTT
T ss_pred             ---------------------------------CCCCEEEEEECCCCccccc-----cCHHHHHHHHHHcCCeEEEEeCC
Confidence                                             1378999999999974211     11234566788899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...+..
T Consensus       154 ~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          154 DSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=98.60  E-value=1e-07  Score=96.24  Aligned_cols=114  Identities=16%  Similarity=0.165  Sum_probs=85.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.+..|+..++.+..                   
T Consensus        79 ~l~i~Dt~G~~~~~~~~~~--~~~~----~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~-------------------  132 (201)
T 2hup_A           79 KLQIWDTAGQERFRTITQS--YYRS----ANGAILAYDITKRSSF-LSVPHWIEDVRKYAG-------------------  132 (201)
T ss_dssp             EEEEECCTTCGGGHHHHHH--HHTT----CSEEEEEEETTBHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEECCCcHhHHHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999999766665544  2222    2379999999999987 888899877655211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~  550 (890)
                                                       .++|+|||+||+|+...-.     .-...++.+|..+|+ ..|.||+
T Consensus       133 ---------------------------------~~~piilv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~~SA  174 (201)
T 2hup_A          133 ---------------------------------SNIVQLLIGNKSDLSELRE-----VSLAEAQSLAEHYDILCAIETSA  174 (201)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCSEEEECBT
T ss_pred             ---------------------------------CCCCEEEEEECCccccccc-----cCHHHHHHHHHHcCCCEEEEEeC
Confidence                                             1479999999999974211     112345678888999 9999999


Q ss_pred             CChhhHHHHHHHHhhhhcC
Q psy11649        551 LDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~fg  569 (890)
                      |.+.|++.++..|...+..
T Consensus       175 ~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          175 KDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.60  E-value=4e-07  Score=106.94  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC------------------------CCCCCccceeEEEEEEeccccceEEEEEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND------------------------TPKPTLALEYIYARKSGKTVMKDICHLWE   89 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~------------------------~~kptigvdY~f~~~~g~~~~k~~l~IwD   89 (890)
                      +-.+|+|||-.++|||||..+|+...+                        ...-++++.-.....   ...+.+++|+|
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~---~~~~~~iNlID  106 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF---PYRDRVVNLLD  106 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE---EETTEEEEEEC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEE---EECCEEEEEEe
Confidence            457899999999999999999963110                        001111111111111   11234899999


Q ss_pred             cCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649         90 LGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK  168 (890)
Q Consensus        90 lpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~  168 (890)
                      |||...|..-+... +-       +|++|+|+|...--.- .....|.+ +.+                           
T Consensus       107 TPGHvDF~~Ev~raL~~-------~DgAvlVvda~~GV~~-qT~~v~~~-a~~---------------------------  150 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTA-------VDSALVVIDAAKGVEA-QTRKLMDV-CRM---------------------------  150 (548)
T ss_dssp             CCCGGGCSHHHHHHHHS-------CSEEEEEEETTTBSCH-HHHHHHHH-HHH---------------------------
T ss_pred             CCCcHHHHHHHHHHHHh-------cCceEEEeecCCCccc-ccHHHHHH-HHH---------------------------
Confidence            99998885544444 43       8999999999985553 34444543 211                           


Q ss_pred             ccccCCCCcEEEEeecccCC
Q psy11649        169 GLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       169 ~li~~l~IPiIVVgNK~Dl~  188 (890)
                           .++|+++++||+|..
T Consensus       151 -----~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          151 -----RATPVMTFVNKMDRE  165 (548)
T ss_dssp             -----TTCCEEEEEECTTSC
T ss_pred             -----hCCceEEEEecccch
Confidence                 279999999999974

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=98.59  E-value=6.6e-08  Score=96.10  Aligned_cols=113  Identities=20%  Similarity=0.299  Sum_probs=83.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|++.|.++ +.+..|+..+..+.                     
T Consensus        76 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~vi~v~D~~~~~s~-~~~~~~l~~i~~~~---------------------  127 (193)
T 2oil_A           76 AQIWDTAGLERYRAITSA--YYRG----AVGALLVFDLTKHQTY-AVVERWLKELYDHA---------------------  127 (193)
T ss_dssp             EEEEEESCCCTTCTTHHH--HHTT----CCEEEEEEETTCHHHH-HTHHHHHHHHHTTS---------------------
T ss_pred             EEEEeCCCchhhhhhhHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhc---------------------
Confidence            579999998766655544  2222    2378999999999987 77788876654310                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     ..++|+|||+||+|+...-+     .-...++.+|..+|+..|.||++.
T Consensus       128 -------------------------------~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~  171 (193)
T 2oil_A          128 -------------------------------EATIVVMLVGNKSDLSQARE-----VPTEEARMFAENNGLLFLETSALD  171 (193)
T ss_dssp             -------------------------------CTTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             -------------------------------CCCCeEEEEEECCCcccccc-----cCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                           01479999999999974211     112346778889999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|...++.
T Consensus       172 ~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          172 STNVELAFETVLKEIFA  188 (193)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.59  E-value=1.1e-07  Score=94.58  Aligned_cols=117  Identities=19%  Similarity=0.234  Sum_probs=85.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      ...+|+..|...+..+...  .+..    .-++|+|+|++.|.++ +.++ .|+..++++..                  
T Consensus        67 ~~~i~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  121 (194)
T 2atx_A           67 LLGLYDTAGQEDYDRLRPL--SYPM----TDVFLICFSVVNPASF-QNVKEEWVPELKEYAP------------------  121 (194)
T ss_dssp             EEEEECCCCSSSSTTTGGG--GCTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHST------------------
T ss_pred             EEEEEECCCCcchhHHHHH--hcCC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------
Confidence            3589999998776665554  2222    2378999999999988 5554 88877665210                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA  543 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA  543 (890)
                                                         ++|+|||+||+|+....+...       ...-...++.+|..+|+
T Consensus       122 -----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  166 (194)
T 2atx_A          122 -----------------------------------NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGA  166 (194)
T ss_dssp             -----------------------------------TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTC
T ss_pred             -----------------------------------CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCC
Confidence                                               378999999999975311000       01123567788999998


Q ss_pred             -ceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        544 -SLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       544 -sL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                       ..|.||+|.+.|++.++..|...++
T Consensus       167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          167 CCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence             8999999999999999999988765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.59  E-value=7.6e-08  Score=96.45  Aligned_cols=114  Identities=17%  Similarity=0.206  Sum_probs=85.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.+..|+..+..+..                   
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  111 (203)
T 1zbd_A           58 KLQIWDTAGLERYRTITTA--YYRG----AMGFILMYDITNEESF-NAVQDWSTQIKTYSW-------------------  111 (203)
T ss_dssp             EEEEEEECCSGGGHHHHHT--TGGG----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-------------------
T ss_pred             EEEEEECCCchhhcchHHH--hhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            3589999998766655444  2221    2379999999999887 888888877654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|+|||+||+|+...-.     .-...++.+|..+|+..|.+|++
T Consensus       112 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  153 (203)
T 1zbd_A          112 ---------------------------------DNAQVLLVGNKCDMEDERV-----VSSERGRQLADHLGFEFFEASAK  153 (203)
T ss_dssp             ---------------------------------SSCEEEEEEECTTCTTSCC-----SCHHHHHHHHHHHTCEEEECBTT
T ss_pred             ---------------------------------CCCCEEEEEECcccCcccc-----cCHHHHHHHHHHCCCeEEEEECC
Confidence                                             1378999999999964211     11234667888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++.+|...+..
T Consensus       154 ~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          154 DNINVKQTFERLVDVICE  171 (203)
T ss_dssp             TTBSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999888764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.9e-07  Score=95.64  Aligned_cols=114  Identities=18%  Similarity=0.221  Sum_probs=84.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    ..++|+|+|++.+.++ +.++.|+..++.+..                   
T Consensus        63 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~vilV~D~~~~~s~-~~~~~~l~~i~~~~~-------------------  116 (223)
T 3cpj_B           63 KAQIWDTAGQERYRAITSA--YYRG----AVGALIVYDISKSSSY-ENCNHWLSELRENAD-------------------  116 (223)
T ss_dssp             EEEEECCTTTTTTTCCCGG--GTTT----CCEEEEEEC-CCHHHH-HHHHHHHHHHHHHCC-------------------
T ss_pred             EEEEEECCCccchhhhHHH--Hhcc----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            3589999998776665554  2222    2378999999999987 888889887755211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|+|||+||+|+...-+-     -...++.+|..+|+..+.+|++
T Consensus       117 ---------------------------------~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~~Sa~  158 (223)
T 3cpj_B          117 ---------------------------------DNVAVGLIGNKSDLAHLRAV-----PTEESKTFAQENQLLFTETSAL  158 (223)
T ss_dssp             -----------------------------------CEEEEEECCGGGGGGCCS-----CHHHHHHHHHHTTCEEEECCCC
T ss_pred             ---------------------------------CCCeEEEEEECccccccccc-----CHHHHHHHHHHcCCEEEEEeCC
Confidence                                             14799999999999742111     1223567788899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...++.
T Consensus       159 ~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          159 NSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             -CCCHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999999986

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.58  E-value=1.6e-07  Score=90.14  Aligned_cols=112  Identities=16%  Similarity=0.136  Sum_probs=84.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+.    ..-++++|+|.+.|.++ +.+..|+..+..+..                   
T Consensus        55 ~~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  108 (168)
T 1z2a_A           55 RLMLWDTAGQEEFDAITKA--YYR----GAQACVLVFSTTDRESF-EAISSWREKVVAEVG-------------------  108 (168)
T ss_dssp             EEEEECCTTGGGTTCCCHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHHC-------------------
T ss_pred             EEEEEcCCCcHhHHHHHHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            3589999998666655444  222    12378999999999987 888888877765321                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        ++|++||+||+|+...-+     .-...++.+|..+|+..+.+|++
T Consensus       109 ----------------------------------~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  149 (168)
T 1z2a_A          109 ----------------------------------DIPTALVQNKIDLLDDSC-----IKNEEAEGLAKRLKLRFYRTSVK  149 (168)
T ss_dssp             ----------------------------------SCCEEEEEECGGGGGGCS-----SCHHHHHHHHHHHTCEEEECBTT
T ss_pred             ----------------------------------CCCEEEEEECcccCcccc-----cCHHHHHHHHHHcCCeEEEEecC
Confidence                                              278999999999974211     11234567888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++++|...++
T Consensus       150 ~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          150 EDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             TTBSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988775

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.57  E-value=2.4e-07  Score=88.61  Aligned_cols=113  Identities=15%  Similarity=0.169  Sum_probs=82.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.+..|+..+..+...                   
T Consensus        54 ~~l~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  107 (168)
T 1u8z_A           54 IDILDTAGQEDYAAIRDN--YFRS----GEGFLCVFSITEMESF-AATADFREQILRVKED-------------------  107 (168)
T ss_dssp             EEEEECCC---CHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCC-------------------
T ss_pred             EEEEECCCcchhHHHHHH--Hhhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            579999998766655444  2221    2378999999999987 8888898877654321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|++||+||+|+...-+     .-...++.+|..+|+..+.+|++.
T Consensus       108 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~~  150 (168)
T 1u8z_A          108 --------------------------------ENVPFLLVGNKSDLEDKRQ-----VSVEEAKNRADQWNVNYVETSAKT  150 (168)
T ss_dssp             --------------------------------TTSCEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             --------------------------------CCCcEEEEEECccccccCc-----cCHHHHHHHHHHcCCeEEEeCCCC
Confidence                                            1479999999999974322     112345667788899999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++.+|...+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          151 RANVDKVFFDLMREIR  166 (168)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999987764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.57  E-value=3.4e-07  Score=88.96  Aligned_cols=115  Identities=11%  Similarity=0.085  Sum_probs=85.4

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ...+|+..|...+..+...  .+..    .-++++|+|++.+.++ +.+..|+..+..+...                  
T Consensus        58 ~~~~~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  112 (181)
T 2fn4_A           58 RLDILDTAGQEEFGAMREQ--YMRA----GHGFLLVFAINDRQSF-NEVGKLFTQILRVKDR------------------  112 (181)
T ss_dssp             EEEEEECCCTTTTSCCHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHTS------------------
T ss_pred             EEEEEECCCchhhHHHHHH--HHhh----CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence            3579999998766665554  2222    2378999999999987 7888888766443221                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|++||+||+|+...-+-     -...++.+|..+|+..+.+|++
T Consensus       113 ---------------------------------~~~piilv~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~~Sa~  154 (181)
T 2fn4_A          113 ---------------------------------DDFPVVLVGNKADLESQRQV-----PRSEASAFGASHHVAYFEASAK  154 (181)
T ss_dssp             ---------------------------------SCCCEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEECBTT
T ss_pred             ---------------------------------CCCCEEEEEECccccccccc-----CHHHHHHHHHHcCCeEEEecCC
Confidence                                             14799999999999742111     1233567888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++++|...+..
T Consensus       155 ~~~gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          155 LRLNVDEAFEQLVRAVRK  172 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.56  E-value=7.6e-08  Score=96.18  Aligned_cols=118  Identities=14%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|.+.|.++ +.+..|+..+..+...                  
T Consensus        74 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------  128 (208)
T 2yc2_C           74 ELFLLDTAGSDLYKEQISQ--YWNG----VYYAILVFDVSSMESF-ESCKAWFELLKSARPD------------------  128 (208)
T ss_dssp             EEEEEETTTTHHHHHHHST--TCCC----CCEEEEEEETTCHHHH-HHHHHHHHHHHHHCSC------------------
T ss_pred             EEEEEECCCcHHHHHHHHH--HHhh----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhhcc------------------
Confidence            3589999999666555444  2221    2379999999999987 8888998877663220                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                     ...++|+|||+||+|+...    ....-...++.+|..+|+..+.||++
T Consensus       129 -------------------------------~~~~~piilv~nK~Dl~~~----~~~v~~~~~~~~~~~~~~~~~~~Sa~  173 (208)
T 2yc2_C          129 -------------------------------RERPLRAVLVANKTDLPPQ----RHQVRLDMAQDWATTNTLDFFDVSAN  173 (208)
T ss_dssp             -------------------------------TTSCCEEEEEEECC-----------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred             -------------------------------cccCCcEEEEEECcccchh----hccCCHHHHHHHHHHcCCEEEEeccC
Confidence                                           0124899999999999741    01111345677888999999999999


Q ss_pred             C-hhhHHHHHHHHhhhhcC
Q psy11649        552 D-PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~-~~n~~~l~kyi~hr~fg  569 (890)
                      . +.|++.++..|...+..
T Consensus       174 ~~~~gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          174 PPGKDADAPFLSIATTFYR  192 (208)
T ss_dssp             ------CHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9 99999999999887753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.56  E-value=7e-08  Score=97.21  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.+..|+..++.+..                   
T Consensus        75 ~l~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  128 (200)
T 2o52_A           75 KLQIWDTAGQERFRSVTRS--YYRG----AAGALLVYDITSRETY-NSLAAWLTDARTLAS-------------------  128 (200)
T ss_dssp             EEEEECCTTHHHHSCCCHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHTC-------------------
T ss_pred             EEEEEcCCCcHhHHHHHHH--Hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            4589999998655554443  2221    2378999999999987 888888877655211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|+|||+||+|+...-.-.     ...++.+|..+|+..|.||++
T Consensus       129 ---------------------------------~~~piilv~nK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~~SA~  170 (200)
T 2o52_A          129 ---------------------------------PNIVVILCGNKKDLDPEREVT-----FLEASRFAQENELMFLETSAL  170 (200)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGGGGCCSC-----HHHHHHHHHHTTCEEEEECTT
T ss_pred             ---------------------------------CCCcEEEEEECCCcccccccC-----HHHHHHHHHHcCCEEEEEeCC
Confidence                                             147999999999996321111     233567888999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...++.
T Consensus       171 ~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          171 TGENVEEAFLKCARTILN  188 (200)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.55  E-value=1.7e-07  Score=95.20  Aligned_cols=117  Identities=9%  Similarity=0.144  Sum_probs=89.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+.    ..-++|+|+|.+.+.++ +.+..|+..++.....                   
T Consensus        63 ~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  116 (218)
T 4djt_A           63 FNVWDTAGQEKKAVLKDV--YYI----GASGAILFFDVTSRITC-QNLARWVKEFQAVVGN-------------------  116 (218)
T ss_dssp             EEEEEECSGGGTSCCCHH--HHT----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCS-------------------
T ss_pred             EEEEecCCchhhchHHHH--Hhh----cCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            689999998665554444  122    13378999999999988 8888998887664321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       ++|+|||+||+|+...     .......++.+|..+|+..|.+|++.
T Consensus       117 ---------------------------------~~piilv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (218)
T 4djt_A          117 ---------------------------------EAPIVVCANKIDIKNR-----QKISKKLVMEVLKGKNYEYFEISAKT  158 (218)
T ss_dssp             ---------------------------------SSCEEEEEECTTCC---------CCHHHHHHHTTTCCCEEEEEBTTT
T ss_pred             ---------------------------------CCCEEEEEECCCCccc-----cccCHHHHHHHHHHcCCcEEEEecCC
Confidence                                             3789999999998632     22334567788899999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSHLA  573 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~~~  573 (890)
                      +.|++.++.+|...+......
T Consensus       159 g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          159 AHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             TBTTTHHHHHHHHHHHCCTTC
T ss_pred             CCCHHHHHHHHHHHHhccccc
Confidence            999999999999999875443

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.54  E-value=6.4e-08  Score=95.73  Aligned_cols=114  Identities=12%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+..|...+..+...  .+..    .-++|+|+|.+.|.++ +.++.|+..+..+..                    
T Consensus        66 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  118 (195)
T 1x3s_A           66 LAIWDTAGQERFRTLTPS--YYRG----AQGVILVYDVTRRDTF-VKLDNWLNELETYCT--------------------  118 (195)
T ss_dssp             EEEEEECSSGGGCCSHHH--HHTT----CCEEEEEEETTCHHHH-HTHHHHHHHHTTCCS--------------------
T ss_pred             EEEEeCCCchhhhhhhHH--Hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999998766665544  2222    2379999999999887 777788765432110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     ..++|++||+||+|+... +     ...+.++.+|..+|+..|.+|++.
T Consensus       119 -------------------------------~~~~p~ilv~nK~Dl~~~-~-----~~~~~~~~~~~~~~~~~~~~Sa~~  161 (195)
T 1x3s_A          119 -------------------------------RNDIVNMLVGNKIDKENR-E-----VDRNEGLKFARKHSMLFIEASAKT  161 (195)
T ss_dssp             -------------------------------CSCCEEEEEEECTTSSSC-C-----SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             -------------------------------cCCCcEEEEEECCcCccc-c-----cCHHHHHHHHHHcCCEEEEecCCC
Confidence                                           114899999999999421 1     112346678889999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCC
Q psy11649        553 PGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~  570 (890)
                      +.|++.++.+|...+...
T Consensus       162 ~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          162 CDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             CTTHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHHhh
Confidence            999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.54  E-value=5.3e-07  Score=88.18  Aligned_cols=118  Identities=19%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|...+..+...  .+.    ..-++++|+|++.+.++ +.+. .|+..++.+..                   
T Consensus        55 ~~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  108 (186)
T 1mh1_A           55 LGLWDTAGQEDYDRLRPL--SYP----QTDVSLICFSLVSPASF-ENVRAKWYPEVRHHCP-------------------  108 (186)
T ss_dssp             EEEECCCCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHST-------------------
T ss_pred             EEEEECCCCHhHHHHHHH--hcc----CCcEEEEEEECCChhhH-HHHHHHHHHHHHHhCC-------------------
Confidence            479999999766655444  222    22378999999999988 5554 78776654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHH---------HHHHHHHHHHcC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIA---------VQCLRYLAHVNG  542 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~I---------q~~lR~fcl~yG  542 (890)
                                                        ++|+|||+||+|+...-  +..+.+         ....+.+|..+|
T Consensus       109 ----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (186)
T 1mh1_A          109 ----------------------------------NTPIILVGTKLDLRDDK--DTIEKLKEKKLTPITYPQGLAMAKEIG  152 (186)
T ss_dssp             ----------------------------------TSCEEEEEECHHHHTCH--HHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             ----------------------------------CCCEEEEeEcccccccc--hhhhhhcccccccCCHHHHHHHHHhcC
Confidence                                              37899999999997431  111111         245677889999


Q ss_pred             C-ceeEeccCChhhHHHHHHHHhhhhcCCCC
Q psy11649        543 A-SLLFHSSLDPGLVKRTRDILNHYAFSSHL  572 (890)
Q Consensus       543 A-sL~ftS~K~~~n~~~l~kyi~hr~fg~~~  572 (890)
                      + ..|.+|++.+.|++.++.+|...++.-+.
T Consensus       153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          153 AVKYLECSALTQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred             CcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence            8 89999999999999999999999876443

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=98.54  E-value=9.5e-08  Score=95.49  Aligned_cols=112  Identities=16%  Similarity=0.167  Sum_probs=82.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.++.|+..++.+..                    
T Consensus        77 l~l~Dt~G~~~~~~~~~~--~~~~----~d~iilV~D~~~~~s~-~~~~~~~~~i~~~~~--------------------  129 (192)
T 2il1_A           77 LQIWDTAGQERFNSITSA--YYRS----AKGIILVYDITKKETF-DDLPKWMKMIDKYAS--------------------  129 (192)
T ss_dssp             EEEEEECCSGGGHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEeCCCcHHHHHHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999998766655444  2221    2378999999999987 888889776654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K  551 (890)
                                                      .++|++||+||+|+...-+     .....++.+|..+ |...+.||+|
T Consensus       130 --------------------------------~~~piilV~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A          130 --------------------------------EDAELLLVGNKLDCETDRE-----ITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             --------------------------------TTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             --------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHhcCCCeEEEEeCC
Confidence                                            1478999999999964211     1122346677775 8899999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++++|...+.
T Consensus       173 ~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999988764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.54  E-value=2.1e-07  Score=92.89  Aligned_cols=115  Identities=15%  Similarity=0.164  Sum_probs=86.8

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++++|+|.+.+.++ +.+..|+..+..+...                  
T Consensus        63 ~~~l~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~------------------  117 (206)
T 2bov_A           63 QIDILDTAGQEDYAAIRDN--YFRS----GEGFLCVFSITEMESF-AATADFREQILRVKED------------------  117 (206)
T ss_dssp             EEEEEECCCTTCCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHTTC------------------
T ss_pred             EEEEEcCCChhhhHHHHHH--HHhh----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC------------------
Confidence            3579999998776665554  2222    2378999999999987 8888888777653221                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|+|||+||+|+...-+     .-...++.+|..+|+..|.+|++
T Consensus       118 ---------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  159 (206)
T 2bov_A          118 ---------------------------------ENVPFLLVGNKSDLEDKRQ-----VSVEEAKNRAEQWNVNYVETSAK  159 (206)
T ss_dssp             ---------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEEECTT
T ss_pred             ---------------------------------CCCCEEEEEeccCcccccc-----ccHHHHHHHHHHhCCeEEEEeCC
Confidence                                             1489999999999974321     11234667788899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++.+|...+..
T Consensus       160 ~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.54  E-value=1.3e-07  Score=91.34  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=78.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+...+.-. .+..    .-++++|+|++.|.++ +.+..|+..+..+...                   
T Consensus        53 ~~i~D~~g~~~~~~~~~~~-~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  107 (169)
T 3q85_A           53 LIVYDIWEQGDAGGWLQDH-CLQT----GDAFLIVFSVTDRRSF-SKVPETLLRLRAGRPH-------------------  107 (169)
T ss_dssp             EEEECCCCC--------CH-HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSTT-------------------
T ss_pred             EEEEECCCccccchhhhhh-hhcc----CCEEEEEEECCChHHH-HHHHHHHHHHHhcccC-------------------
Confidence            4799999986554422210 1111    2378999999999987 8888888766542110                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+|||+||+|+...-     ......++.+|..+|+..+.+|++.
T Consensus       108 --------------------------------~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (169)
T 3q85_A          108 --------------------------------HDLPVILVGNKSDLARSR-----EVSLEEGRHLAGTLSCKHIETSAAL  150 (169)
T ss_dssp             --------------------------------SCCCEEEEEECTTCGGGC-----CSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             --------------------------------CCCCEEEEeeCcchhhcc-----cCCHHHHHHHHHHcCCcEEEecCcc
Confidence                                            148999999999986321     1223446788999999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|...+
T Consensus       151 ~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          151 HHNTRELFEGAVRQI  165 (169)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999998765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.54  E-value=9.9e-08  Score=94.67  Aligned_cols=114  Identities=17%  Similarity=0.286  Sum_probs=81.5

Q ss_pred             eeEEEEeCCCcccc-cccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRL-EVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~-~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      -..+|+..|...+. .+...  .+.    ..-++|+|+|.+.+.++ +.+..|+..+..+...                 
T Consensus        70 ~~~l~Dt~G~~~~~~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~-----------------  125 (189)
T 1z06_A           70 KIQLWDTAGQERFRKSMVQH--YYR----NVHAVVFVYDMTNMASF-HSLPAWIEECKQHLLA-----------------  125 (189)
T ss_dssp             EEEEEECCCSHHHHTTTHHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHCCC-----------------
T ss_pred             EEEEEECCCchhhhhhhhHH--Hhc----CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcCC-----------------
Confidence            36899999986554 43333  122    12389999999999988 7888898777653321                 


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                                                        .++|+|||+||+|+...-+     .-...++.+|..+|+..+.+|+
T Consensus       126 ----------------------------------~~~piilv~nK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa  166 (189)
T 1z06_A          126 ----------------------------------NDIPRILVGNKCDLRSAIQ-----VPTDLAQKFADTHSMPLFETSA  166 (189)
T ss_dssp             ----------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCCEEECCS
T ss_pred             ----------------------------------CCCCEEEEEECccccccce-----eCHHHHHHHHHHcCCEEEEEeC
Confidence                                              1479999999999964211     1123457788899999999999


Q ss_pred             CCh---hhHHHHHHHHhhhhc
Q psy11649        551 LDP---GLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~---~n~~~l~kyi~hr~f  568 (890)
                      |.+   .|++.++..|...+.
T Consensus       167 ~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          167 KNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             SSGGGGSCHHHHHHHHC----
T ss_pred             CcCCcccCHHHHHHHHHHHHh
Confidence            999   999999999887653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.53  E-value=2.4e-07  Score=88.25  Aligned_cols=111  Identities=14%  Similarity=0.182  Sum_probs=84.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++++|+|.+.++++ +.+..|+..++.+...                   
T Consensus        53 ~~~~D~~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~-------------------  106 (166)
T 2ce2_X           53 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINNTKSF-EDIHQYREQIKRVKDS-------------------  106 (166)
T ss_dssp             EEEEECCCCSSCCHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHTC-------------------
T ss_pred             EEEEECCCchhhhHHHHH--hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            578999998766655553  1221    2278999999999987 7888898877664321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|++||+||+|+...  .    .....++.+|..+|+..+.+|++.
T Consensus       107 --------------------------------~~~p~iiv~nK~Dl~~~--~----~~~~~~~~~~~~~~~~~~~~Sa~~  148 (166)
T 2ce2_X          107 --------------------------------DDVPMVLVGNKSDLAAR--T----VESRQAQDLARSYGIPYIETSAKT  148 (166)
T ss_dssp             --------------------------------SCCCEEEEEECTTCSCC--C----SCHHHHHHHHHHHTCCEEEECTTT
T ss_pred             --------------------------------CCCcEEEEEEchhhhhc--c----cCHHHHHHHHHHcCCeEEEecCCC
Confidence                                            14789999999999752  1    113456677888999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++.+|...+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          149 RQGVEDAFYTLVREI  163 (166)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999998775

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.53  E-value=3.2e-07  Score=90.76  Aligned_cols=113  Identities=14%  Similarity=0.172  Sum_probs=79.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++++|+|++.++++ +.++.|+..++.+...                   
T Consensus        71 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  124 (190)
T 3con_A           71 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINNSKSF-ADINLYREQIKRVKDS-------------------  124 (190)
T ss_dssp             EEEEECCC-------------CTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHTC-------------------
T ss_pred             EEEEECCChHHHHHHHHH--hhCc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            579999998766655544  2221    2378899999999987 8889998877654321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|++||+||+|+...  .    .....++.+|..+|+..+.||++.
T Consensus       125 --------------------------------~~~p~ilv~nK~Dl~~~--~----~~~~~~~~~~~~~~~~~~~~Sa~~  166 (190)
T 3con_A          125 --------------------------------DDVPMVLVGNKCDLPTR--T----VDTKQAHELAKSYGIPFIETSAKT  166 (190)
T ss_dssp             --------------------------------SCCCEEEEEECTTCSCC--C----SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             --------------------------------CCCeEEEEEECCcCCcc--c----CCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            14799999999998741  1    123455677888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.+++.|...+..
T Consensus       167 ~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          167 RQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.52  E-value=3e-07  Score=89.86  Aligned_cols=116  Identities=20%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|...+..+...  .+..    .-++++|+|.+.|.++ +.+. .|+..++.+..                   
T Consensus        58 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  111 (182)
T 3bwd_D           58 LGLWDTAGQEDYNRLRPL--SYRG----ADVFILAFSLISKASY-ENVSKKWIPELKHYAP-------------------  111 (182)
T ss_dssp             CEEECCCC-CTTTTTGGG--GGTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT-------------------
T ss_pred             EEEEECCCChhhhhhHHh--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            479999998766655544  2221    2379999999999988 5554 78877654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-----HHHHHHHHHHHHHHHcCC-ce
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-----KKRIAVQCLRYLAHVNGA-SL  545 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-----~~d~Iq~~lR~fcl~yGA-sL  545 (890)
                                                        ++|++||+||+|+..+-...     ........++.+|..+|+ ..
T Consensus       112 ----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  157 (182)
T 3bwd_D          112 ----------------------------------GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAY  157 (182)
T ss_dssp             ----------------------------------TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEE
T ss_pred             ----------------------------------CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEE
Confidence                                              37899999999997431100     000134567788999997 89


Q ss_pred             eEeccCChhhHHHHHHHHhhhhc
Q psy11649        546 LFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       546 ~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      |.||+|.+.|++.++..|...++
T Consensus       158 ~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          158 IECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.52  E-value=1.1e-07  Score=95.83  Aligned_cols=112  Identities=14%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.++.|+..++.+..                    
T Consensus        71 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  123 (213)
T 3cph_A           71 LQLWDTAGQERFRTITTA--YYRG----AMGIILVYDVTDERTF-TNIKQWFKTVNEHAN--------------------  123 (213)
T ss_dssp             EEEECCTTGGGGTCCCHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHTT--------------------
T ss_pred             EEEEeCCCcHHHHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            589999998666554443  2221    2378999999999986 888888877765321                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-      .....++.+|..+|+..|.+|++.
T Consensus       124 --------------------------------~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~  165 (213)
T 3cph_A          124 --------------------------------DEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKN  165 (213)
T ss_dssp             --------------------------------TCSEEEEEEECTTCSSCC------SCHHHHHHHHHHHTCCEEECBTTT
T ss_pred             --------------------------------CCCCEEEEEECCCCcccc------cCHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            137899999999994211      112345677888899999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++.+|...+..
T Consensus       166 ~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          166 DDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             TBSSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.52  E-value=2.3e-07  Score=100.84  Aligned_cols=98  Identities=12%  Similarity=0.085  Sum_probs=73.1

Q ss_pred             CcchhhHHhhhhccccccccCcEEEEEEeCCCcC-chHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649         93 GTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus        93 ~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~-S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                      ++++..+...+    ++  ++|++++|+|+++|. ++ +.+..|+..+..                              
T Consensus        66 ~er~~~l~r~~----~~--naD~vliV~d~~~p~~s~-~~l~~~l~~~~~------------------------------  108 (302)
T 2yv5_A           66 EERKNLLIRPK----VA--NVDRVIIVETLKMPEFNN-YLLDNMLVVYEY------------------------------  108 (302)
T ss_dssp             CCCSCEEETTE----EE--SCCEEEEEECSTTTTCCH-HHHHHHHHHHHH------------------------------
T ss_pred             CChHHHHhHHH----HH--hcCEEEEEEECCCCCCCH-HHHHHHHHHHHh------------------------------
Confidence            45555555555    33  699999999999986 76 678888875432                              


Q ss_pred             cCCCCcEEEEeecccCCCCCCcchhhhh-HHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        172 RTFPVPLILIGGKYDLFENLEPNKKRIA-VQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i-~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                        .++|+++|+||+|+..     .+.+. .+....++..+|..++++||+++.|+++|++.+..
T Consensus       109 --~~~~~ilV~NK~DL~~-----~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          109 --FKVEPVIVFNKIDLLN-----EEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             --TTCEEEEEECCGGGCC-----HHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred             --CCCCEEEEEEcccCCC-----ccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence              2689999999999962     22212 34556677778999999999999999999877643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.52  E-value=2.3e-07  Score=90.30  Aligned_cols=117  Identities=15%  Similarity=0.212  Sum_probs=77.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.+..|+..+..+...                   
T Consensus        60 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  113 (182)
T 1ky3_A           60 MQVWDTAGQERFQSLGVA--FYRG----ADCCVLVYDVTNASSF-ENIKSWRDEFLVHANV-------------------  113 (182)
T ss_dssp             EEEECCC----------C--CSTT----CCEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------
T ss_pred             EEEEECCCChHhhhhhHH--Hhhc----CCEEEEEEECCChHHH-HHHHHHHHHHHHHhcc-------------------
Confidence            589999998766655444  2221    2378999999999987 8889998887765431                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH-HcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-VNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS~K  551 (890)
                                                   ....++|++||+||+|+...-..    .....++.+|. ..+...+.||++
T Consensus       114 -----------------------------~~~~~~p~ilv~nK~Dl~~~~~~----v~~~~~~~~~~~~~~~~~~~~Sa~  160 (182)
T 1ky3_A          114 -----------------------------NSPETFPFVILGNKIDAEESKKI----VSEKSAQELAKSLGDIPLFLTSAK  160 (182)
T ss_dssp             -----------------------------SCTTTCCEEEEEECTTSCGGGCC----SCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred             -----------------------------cCcCCCcEEEEEECCcccccccc----CCHHHHHHHHHhcCCCeEEEEecC
Confidence                                         00125899999999998632111    11233455665 567899999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++..|...+.
T Consensus       161 ~~~gi~~l~~~l~~~~~  177 (182)
T 1ky3_A          161 NAINVDTAFEEIARSAL  177 (182)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999988764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.52  E-value=1.9e-07  Score=93.99  Aligned_cols=117  Identities=19%  Similarity=0.234  Sum_probs=85.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ...+|+..|...+..+...  .+..    .-++++|+|++.|.++-+..+.|+..++.+..                   
T Consensus        74 ~l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-------------------  128 (201)
T 2gco_A           74 ELALWDTAGQEDYDRLRPL--SYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-------------------  128 (201)
T ss_dssp             EEEEECCCCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-------------------
T ss_pred             EEEEEECCCchhHHHHHHH--hcCC----CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-------------------
Confidence            3589999998766665554  2222    23789999999999884333788877654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHH---------HHHHHHHHHHHcC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI---------AVQCLRYLAHVNG  542 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~---------Iq~~lR~fcl~yG  542 (890)
                                                        ++|++||+||+|+....  +..+.         -....+.+|..+|
T Consensus       129 ----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~  172 (201)
T 2gco_A          129 ----------------------------------NVPIILVGNKKDLRQDE--HTRRELAKMKQEPVRSEEGRDMANRIS  172 (201)
T ss_dssp             ----------------------------------TCCEEEEEECGGGTTCH--HHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred             ----------------------------------CCCEEEEEecHHhhcCc--cchhhhcccccCcCCHHHHHHHHHhCC
Confidence                                              37899999999997531  11111         1346678899999


Q ss_pred             C-ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        543 A-SLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       543 A-sL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      + ..|.||++.+.|++.++..|...++.
T Consensus       173 ~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          173 AFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            9 89999999999999999999988764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.52  E-value=2.7e-07  Score=93.25  Aligned_cols=121  Identities=21%  Similarity=0.206  Sum_probs=85.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ...+|+..|...+..+...  .+..    .-++|+|+|++.|.++-+..+.|+..++.+..                   
T Consensus        58 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-------------------  112 (212)
T 2j0v_A           58 NLGLWDTAGQEDYSRLRPL--SYRG----ADIFVLAFSLISKASYENVLKKWMPELRRFAP-------------------  112 (212)
T ss_dssp             EEEEECCCCCCCCCC--CG--GGTT----CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-------------------
T ss_pred             EEEEEECCCcHHHHHHHHh--hccC----CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-------------------
Confidence            4589999999777666554  2222    23789999999999984444589877665210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh---hHHHHHHHHHHHHHHHcCC-ceeE
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP---NKKRIAVQCLRYLAHVNGA-SLLF  547 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~---E~~d~Iq~~lR~fcl~yGA-sL~f  547 (890)
                                                        ++|+|||+||+|+..+-..   +....-...++.+|..+|+ ..|.
T Consensus       113 ----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  158 (212)
T 2j0v_A          113 ----------------------------------NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIE  158 (212)
T ss_dssp             ----------------------------------TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEE
T ss_pred             ----------------------------------CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEE
Confidence                                              3789999999998742100   0000124556788889997 8999


Q ss_pred             eccCChhhHHHHHHHHhhhhcCCC
Q psy11649        548 HSSLDPGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       548 tS~K~~~n~~~l~kyi~hr~fg~~  571 (890)
                      ||++.+.|++.++..|...+....
T Consensus       159 ~Sa~~g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          159 CSSKTQQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred             ccCCCCCCHHHHHHHHHHHHhhhh
Confidence            999999999999999999987643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.52  E-value=1.6e-07  Score=93.86  Aligned_cols=117  Identities=19%  Similarity=0.218  Sum_probs=84.5

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      ...+|+..|...+..+...  .+..    .-++|+|+|++.|.++ +.+ +.|+..++.+..                  
T Consensus        69 ~~~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  123 (201)
T 2q3h_A           69 RLQLCDTAGQDEFDKLRPL--CYTN----TDIFLLCFSVVSPSSF-QNVSEKWVPEIRCHCP------------------  123 (201)
T ss_dssp             EEEEEECCCSTTCSSSGGG--GGTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCS------------------
T ss_pred             EEEEEECCCCHHHHHHhHh--hcCC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------
Confidence            3579999999776665554  2221    2379999999999988 555 478876654210                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-------HHHHHHHHHHHHHHHcCC
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-------KKRIAVQCLRYLAHVNGA  543 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-------~~d~Iq~~lR~fcl~yGA  543 (890)
                                                         ++|+|||+||+|+....+..       ........++.+|..+|+
T Consensus       124 -----------------------------------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  168 (201)
T 2q3h_A          124 -----------------------------------KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA  168 (201)
T ss_dssp             -----------------------------------SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred             -----------------------------------CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence                                               37899999999997431100       011123456788888998


Q ss_pred             -ceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        544 -SLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       544 -sL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                       ..|.||++.+.|++.++.+|...++
T Consensus       169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          169 ASYIECSALTQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCCHHHHHHHHHHHHh
Confidence             8999999999999999999988775

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.51  E-value=3.2e-07  Score=89.24  Aligned_cols=116  Identities=10%  Similarity=0.136  Sum_probs=85.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++++|+|++.+.++ +.+..|+..+..+...                  
T Consensus        57 ~~~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  111 (177)
T 1wms_A           57 TMQIWDTAGQERFRSLRTP--FYRG----SDCCLLTFSVDDSQSF-QNLSNWKKEFIYYADV------------------  111 (177)
T ss_dssp             EEEEEECCCCGGGHHHHGG--GGTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC------------------
T ss_pred             EEEEEeCCCchhhhhhHHH--HHhc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHccc------------------
Confidence            3689999998776665544  2222    2378999999999987 8889999888765432                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEecccccc-CCChhHHHHHHHHHHHHHH-HcCCceeEec
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFE-NLEPNKKRIAVQCLRYLAH-VNGASLLFHS  549 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~-~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS  549 (890)
                                                    ....++|++||+||+|+.. ...       ...++.+|. ..++..|.+|
T Consensus       112 ------------------------------~~~~~~p~i~v~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~S  154 (177)
T 1wms_A          112 ------------------------------KEPESFPFVILGNKIDISERQVS-------TEEAQAWCRDNGDYPYFETS  154 (177)
T ss_dssp             ------------------------------SCTTTSCEEEEEECTTCSSCSSC-------HHHHHHHHHHTTCCCEEECC
T ss_pred             ------------------------------cccCCCcEEEEEECCcccccccC-------HHHHHHHHHhcCCceEEEEe
Confidence                                          0012589999999999972 111       223455565 6788999999


Q ss_pred             cCChhhHHHHHHHHhhhhcC
Q psy11649        550 SLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++.+.|++.++..|...++.
T Consensus       155 a~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          155 AKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TTTCTTHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999988865

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.49  E-value=1.6e-07  Score=92.62  Aligned_cols=116  Identities=16%  Similarity=0.119  Sum_probs=79.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  .+..    .-++|+|+|.+.+... +..+.|.. +..++..+    .   .         
T Consensus        76 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~~~-~~~~s~~~-l~~~l~~~----~---~---------  131 (198)
T 3t1o_A           76 FHLYTVPGQVFYNASRKL--ILRG----VDGIVFVADSAPNRLR-ANAESMRN-MRENLAEY----G---L---------  131 (198)
T ss_dssp             EEEEECCSCCSCSHHHHH--HTTT----CCEEEEEEECCGGGHH-HHHHHHHH-HHHHHHHT----T---C---------
T ss_pred             EEEEeCCChHHHHHHHHH--HHhc----CCEEEEEEECCcchhh-HhHHHHHH-HHHHHHhh----c---c---------
Confidence            589999999777766665  2332    2378999999976433 33333322 12222220    0   0         


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K  551 (890)
                                                    ...++|+||||||+|+......       ..++.+|..+|+ ..+.||++
T Consensus       132 ------------------------------~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~  174 (198)
T 3t1o_A          132 ------------------------------TLDDVPIVIQVNKRDLPDALPV-------EMVRAVVDPEGKFPVLEAVAT  174 (198)
T ss_dssp             ------------------------------CTTSSCEEEEEECTTSTTCCCH-------HHHHHHHCTTCCSCEEECBGG
T ss_pred             ------------------------------ccCCCCEEEEEEchhcccccCH-------HHHHHHHHhcCCceEEEEecC
Confidence                                          0124899999999999765332       346778888999 99999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...+..
T Consensus       175 ~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          175 EGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             GTBTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999887753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.49  E-value=2.1e-07  Score=91.88  Aligned_cols=111  Identities=15%  Similarity=0.251  Sum_probs=81.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+..    .-++++|+|.+.|.++ +.++.|+..+..+                     
T Consensus        94 ~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~s~-~~~~~~~~~i~~~---------------------  145 (208)
T 3clv_A           94 KFDIWDTAGQERYASIVPL--YYRG----ATCAIVVFDISNSNTL-DRAKTWVNQLKIS---------------------  145 (208)
T ss_dssp             EEEEEECTTGGGCTTTHHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHH---------------------
T ss_pred             EEEEEECCCcHHHHHHHHH--HhcC----CCEEEEEEECCCHHHH-HHHHHHHHHHHhh---------------------
Confidence            3579999998666655443  2221    2279999999999987 7788887766431                     


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       .++|+|||+||+| ...-.     .....++.+|..+|...|.+|++
T Consensus       146 ---------------------------------~~~piilv~NK~D-~~~~~-----~~~~~~~~~~~~~~~~~~~~Sa~  186 (208)
T 3clv_A          146 ---------------------------------SNYIIILVANKID-KNKFQ-----VDILEVQKYAQDNNLLFIQTSAK  186 (208)
T ss_dssp             ---------------------------------SCCEEEEEEECTT-CC-CC-----SCHHHHHHHHHHTTCEEEEECTT
T ss_pred             ---------------------------------CCCcEEEEEECCC-ccccc-----CCHHHHHHHHHHcCCcEEEEecC
Confidence                                             1278999999999 32111     11234567788899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...++.
T Consensus       187 ~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          187 TGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999887753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.48  E-value=2.3e-07  Score=94.61  Aligned_cols=114  Identities=10%  Similarity=0.091  Sum_probs=87.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+.    ..-++|+|+|.+.+.++ +.+..|+..+..+..                   
T Consensus        65 ~~~i~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  118 (221)
T 3gj0_A           65 KFNVWDTAGQEKFGGLRDG--YYI----QAQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCE-------------------  118 (221)
T ss_dssp             EEEEEEECSGGGTSCCCHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHST-------------------
T ss_pred             EEEEEeCCChHHHhHHHHH--HHh----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhCC-------------------
Confidence            3589999998666655444  222    23389999999999987 888889887765311                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        ++|+|||+||+|+...-..+       ....+|..+|+..|.||+|
T Consensus       119 ----------------------------------~~p~ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~Sa~  157 (221)
T 3gj0_A          119 ----------------------------------NIPIVLCGNKVDIKDRKVKA-------KSIVFHRKKNLQYYDISAK  157 (221)
T ss_dssp             ----------------------------------TCCEEEEEECTTSSSCSSCG-------GGCCHHHHHTCEEEECBGG
T ss_pred             ----------------------------------CCCEEEEEECCccccccccH-------HHHHHHHHcCCEEEEEeCC
Confidence                                              37899999999997432222       3445778889999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCCC
Q psy11649        552 DPGLVKRTRDILNHYAFSSHL  572 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~~~  572 (890)
                      .+.|++.++.+|...+.+.+.
T Consensus       158 ~~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          158 SNYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             GTBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999987643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.48  E-value=6.7e-07  Score=87.69  Aligned_cols=113  Identities=14%  Similarity=0.173  Sum_probs=83.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|...+..+...  .+..    .-++++|+|++.+.++ +.+..|+..+..+...                   
T Consensus        54 ~~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  107 (189)
T 4dsu_A           54 LDILDTAGQEEYSAMRDQ--YMRT----GEGFLCVFAINNTKSF-EDIHHYREQIKRVKDS-------------------  107 (189)
T ss_dssp             EEEEECCCC---CTTHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHTTC-------------------
T ss_pred             EEEEECCCcHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCC-------------------
Confidence            578999998776665554  2222    2378999999999887 8888888777653221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-      .....++.+|..+|+..+.+|++.
T Consensus       108 --------------------------------~~~p~i~v~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~  149 (189)
T 4dsu_A          108 --------------------------------EDVPMVLVGNKCDLPSRT------VDTKQAQDLARSYGIPFIETSAKT  149 (189)
T ss_dssp             --------------------------------SCCCEEEEEECTTSSSCS------SCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             --------------------------------CCCcEEEEEECccCcccc------cCHHHHHHHHHHcCCeEEEEeCCC
Confidence                                            147999999999997321      122346678888899999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|...+..
T Consensus       150 g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          150 RQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999887753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.48  E-value=2.4e-07  Score=92.62  Aligned_cols=112  Identities=17%  Similarity=0.088  Sum_probs=82.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|... ..+...  .+.    ..-++++|+|++.|.++ +.++.|+..+.++...                   
T Consensus        78 ~~l~Dt~G~~~-~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~-------------------  130 (196)
T 2atv_A           78 MEILDTAGQED-TIQREG--HMR----WGEGFVLVYDITDRGSF-EEVLPLKNILDEIKKP-------------------  130 (196)
T ss_dssp             EEEEECCCCCC-CHHHHH--HHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-------------------
T ss_pred             EEEEECCCCCc-ccchhh--hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHhhCC-------------------
Confidence            57999999865 222222  111    12378999999999987 8889998877664321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+|||+||+|+...-+     .-...++.+|..+|+..|.+|++.
T Consensus       131 --------------------------------~~~piilv~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~~  173 (196)
T 2atv_A          131 --------------------------------KNVTLILVGNKADLDHSRQ-----VSTEEGEKLATELACAFYECSACT  173 (196)
T ss_dssp             --------------------------------SCCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTSEEEECCTTT
T ss_pred             --------------------------------CCCcEEEEEECcccccccc-----cCHHHHHHHHHHhCCeEEEECCCc
Confidence                                            1479999999999974311     112345677888899999999999


Q ss_pred             hh-hHHHHHHHHhhhhc
Q psy11649        553 PG-LVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~-n~~~l~kyi~hr~f  568 (890)
                      +. |++.++..|...+.
T Consensus       174 g~~gi~~l~~~l~~~i~  190 (196)
T 2atv_A          174 GEGNITEIFYELCREVR  190 (196)
T ss_dssp             CTTCHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99 99999999988775

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.47  E-value=6.4e-07  Score=89.72  Aligned_cols=117  Identities=10%  Similarity=0.073  Sum_probs=81.6

Q ss_pred             eeEEEEeCCCccccccc---ccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccc
Q psy11649        392 ICHLWELGSGTSRLEVA---SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  468 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll---~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~  468 (890)
                      -.++|+..|+..+..+.   ..  .+..    .-++|+|+|++.+  +.++++.|...+++....               
T Consensus        70 ~l~i~Dt~G~~~~~~~~~~~~~--~~~~----~~~~i~v~d~~~~--~~~~~~~~~~~l~~~~~~---------------  126 (196)
T 3llu_A           70 NFQIWDFPGQMDFFDPTFDYEM--IFRG----TGALIYVIDAQDD--YMEALTRLHITVSKAYKV---------------  126 (196)
T ss_dssp             CEEEEECCSSCCTTCTTCCHHH--HHHT----CSEEEEEEETTSC--CHHHHHHHHHHHHHHHHH---------------
T ss_pred             EEEEEECCCCHHHHhhhhhccc--cccc----CCEEEEEEECCCc--hHHHHHHHHHHHHHHHhc---------------
Confidence            35899999997655544   22  1222    3378999999998  346777776666553221               


Q ss_pred             cccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC--hhHHHHHHHHHHHHHH----HcC
Q psy11649        469 TADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE--PNKKRIAVQCLRYLAH----VNG  542 (890)
Q Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~--~E~~d~Iq~~lR~fcl----~yG  542 (890)
                                                         .-++|+||||||+|+..+-.  +.+...-......+|.    .+|
T Consensus       127 -----------------------------------~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A          127 -----------------------------------NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             -----------------------------------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             -----------------------------------CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence                                               01489999999999974211  1123444555677888    789


Q ss_pred             CceeEeccCChhhHHHHHHHHhhhh
Q psy11649        543 ASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       543 AsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      +..+.||+|. .|++.++..|...+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            9999999999 99999999988765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.47  E-value=9.6e-07  Score=87.24  Aligned_cols=117  Identities=17%  Similarity=0.248  Sum_probs=81.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+.    ..-++|+|+|++.+.++-+.++.|+..++.+..                    
T Consensus        57 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--------------------  110 (184)
T 1m7b_A           57 LSLWDTSGSPYYDNVRPL--SYP----DSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--------------------  110 (184)
T ss_dssp             EEEEEECCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--------------------
T ss_pred             EEEEECCCChhhhhhHHh--hcC----CCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--------------------
Confidence            589999998766655544  222    223789999999999983333888876654210                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-------HHHHHHHHHHHHHHHcC-Cc
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-------KKRIAVQCLRYLAHVNG-AS  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-------~~d~Iq~~lR~fcl~yG-As  544 (890)
                                                       ++|+||||||+|+..+....       +...-...++.+|..+| ..
T Consensus       111 ---------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (184)
T 1m7b_A          111 ---------------------------------NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT  157 (184)
T ss_dssp             ---------------------------------TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred             ---------------------------------CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence                                             37899999999997431100       00011345678888899 57


Q ss_pred             eeEeccC-ChhhHHHHHHHHhhhhc
Q psy11649        545 LLFHSSL-DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       545 L~ftS~K-~~~n~~~l~kyi~hr~f  568 (890)
                      .|.||+| .+.|++.++..|...+.
T Consensus       158 ~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          158 YIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             EEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             EEEeeecCCCcCHHHHHHHHHHHHh
Confidence            8899999 68999999999987654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.47  E-value=2.3e-07  Score=94.60  Aligned_cols=115  Identities=20%  Similarity=0.246  Sum_probs=76.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +.+|+..|...+..+...  .+.    ..-++|+|+|++.+.++ +.+ +.|+..++.+..                   
T Consensus        84 l~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  137 (214)
T 2j1l_A           84 LHIWDTAGQDDYDRLRPL--FYP----DASVLLLCFDVTSPNSF-DNIFNRWYPEVNHFCK-------------------  137 (214)
T ss_dssp             EEEEEC---------------------CEEEEEEEEETTCHHHH-HHHHHTHHHHHHHHCS-------------------
T ss_pred             EEEEECCCchhhhHHHHH--Hhc----cCCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            589999998766655444  122    23478999999999988 555 478877654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHH---------HHHHHHHHHHcC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIA---------VQCLRYLAHVNG  542 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~I---------q~~lR~fcl~yG  542 (890)
                                                        ++|+|||+||+|+...-  +..+.+         ...++.+|..+|
T Consensus       138 ----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~  181 (214)
T 2j1l_A          138 ----------------------------------KVPIIVVGCKTDLRKDK--SLVNKLRRNGLEPVTYHRGQEMARSVG  181 (214)
T ss_dssp             ----------------------------------SCCEEEEEECGGGGSCH--HHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred             ----------------------------------CCCEEEEEEChhhhccc--hhhhhhcccccCcccHHHHHHHHHhcC
Confidence                                              37899999999997531  111111         245688999999


Q ss_pred             C-ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        543 A-SLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       543 A-sL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      + ..|.||+|.+.|++.++..|...++.
T Consensus       182 ~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          182 AVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            8 89999999999999999999988764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.47  E-value=7.4e-07  Score=85.41  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=82.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++++|+|.+.|.++ +.++.|+..+..+...                   
T Consensus        53 ~~l~D~~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  106 (167)
T 1c1y_A           53 LEILDTAGTEQFTAMRDL--YMKN----GQGFALVYSITAQSTF-NDLQDLREQILRVKDT-------------------  106 (167)
T ss_dssp             EEEEEECSSCSSTTHHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------
T ss_pred             EEEEECCChHHHHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhhCc-------------------
Confidence            589999998766665544  2222    2378999999999887 7888888776553221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K  551 (890)
                                                      .++|++||+||+|+...-.     .-...++.+|..+ +...+.+|++
T Consensus       107 --------------------------------~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~Sa~  149 (167)
T 1c1y_A          107 --------------------------------EDVPMILVGNKCDLEDERV-----VGKEQGQNLARQWCNCAFLESSAK  149 (167)
T ss_dssp             --------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTSCEEEECBTT
T ss_pred             --------------------------------CCCcEEEEEECcccccccc-----CCHHHHHHHHHHccCCcEEEecCC
Confidence                                            1479999999999974211     1123445667777 7889999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.|++.++.+|...+
T Consensus       150 ~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          150 SKINVNEIFYDLVRQI  165 (167)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.47  E-value=4.7e-07  Score=87.08  Aligned_cols=113  Identities=19%  Similarity=0.168  Sum_probs=83.9

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.++.|+..+.++...                   
T Consensus        53 ~~~~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~~-------------------  106 (172)
T 2erx_A           53 LQITDTTGSHQFPAMQRL--SISK----GHAFILVYSITSRQSL-EELKPIYEQICEIKGD-------------------  106 (172)
T ss_dssp             EEEEECCSCSSCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTTHHHHHHHHHHHC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--hccc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            589999998766655544  2222    2378999999999987 8888888877664321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                               .                      -++|++||+||+|+...-+-     -....+.+|..+|+..|.+|++.
T Consensus       107 ---------~----------------------~~~pii~v~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~~Sa~~  150 (172)
T 2erx_A          107 ---------V----------------------ESIPIMLVGNKCDESPSREV-----QSSEAEALARTWKCAFMETSAKL  150 (172)
T ss_dssp             ---------------------------------CCCEEEEEECGGGGGGCCS-----CHHHHHHHHHHHTCEEEECBTTT
T ss_pred             ---------C----------------------CCCCEEEEEEcccccccccc-----CHHHHHHHHHHhCCeEEEecCCC
Confidence                     0                      14799999999999743111     12334567888899999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++.+|...+
T Consensus       151 ~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          151 NHNVKELFQELLNLE  165 (172)
T ss_dssp             TBSHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998755

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.47  E-value=4.7e-07  Score=87.67  Aligned_cols=113  Identities=18%  Similarity=0.098  Sum_probs=76.4

Q ss_pred             eEEEEeCCCccc--ccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        393 CHLWELGSGTSR--LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       393 ~~vW~L~G~~~~--~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      ..+|+..|....  ..+...  .+.    ..-++++|+|++.|.++ +.+..|+..+.....                  
T Consensus        54 ~~~~D~~g~~~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~------------------  108 (175)
T 2nzj_A           54 LVVVDTWEAEKLDKSWSQES--CLQ----GGSAYVIVYSIADRGSF-ESASELRIQLRRTHQ------------------  108 (175)
T ss_dssp             EEEECCC-------CHHHHH--TTT----SCSEEEEEEETTCHHHH-HHHHHHHHHHHHCC-------------------
T ss_pred             EEEEecCCCCccchhhhHHh--hcc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhc------------------
Confidence            479999998552  222222  111    12378999999999987 788888776544110                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                                                       ..++|+||||||+|+...-+-.     ....+.+|..+|+..+.||+
T Consensus       109 ---------------------------------~~~~piilv~NK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~~Sa  150 (175)
T 2nzj_A          109 ---------------------------------ADHVPIILVGNKADLARCREVS-----VEEGRACAVVFDCKFIETSA  150 (175)
T ss_dssp             ------------------------------------CCEEEEEECTTCTTTCCSC-----HHHHHHHHHHHTSEEEECBT
T ss_pred             ---------------------------------cCCCCEEEEEEChhhccccccC-----HHHHHHHHHHcCCeEEEEec
Confidence                                             0148999999999997431111     12356778889999999999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      |.+.|++.++..|...+.
T Consensus       151 ~~g~gi~~l~~~l~~~~~  168 (175)
T 2nzj_A          151 TLQHNVAELFEGVVRQLR  168 (175)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.47  E-value=3.8e-07  Score=91.33  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=86.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|++.|.++ +.++.|+..+..+...                  
T Consensus        58 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  112 (207)
T 1vg8_A           58 TMQIWDTAGQERFQSLGVA--FYRG----ADCCVLVFDVTAPNTF-KTLDSWRDEFLIQASP------------------  112 (207)
T ss_dssp             EEEEEEECSSGGGSCSCCG--GGTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC------------------
T ss_pred             EEEEEeCCCcHHHHHhHHH--HHhC----CcEEEEEEECCCHHHH-HHHHHHHHHHHHhccc------------------
Confidence            3689999998666655444  2221    2378999999999987 8889998877764431                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH-HcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-VNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl-~yGAsL~ftS~  550 (890)
                                                    ....++|+|||+||+|+...-  .    ....++.+|. ..++..|.+|+
T Consensus       113 ------------------------------~~~~~~piilv~nK~Dl~~~~--~----~~~~~~~~~~~~~~~~~~~~Sa  156 (207)
T 1vg8_A          113 ------------------------------RDPENFPFVVLGNKIDLENRQ--V----ATKRAQAWCYSKNNIPYFETSA  156 (207)
T ss_dssp             ------------------------------SSGGGSCEEEEEECTTSSCCC--S----CHHHHHHHHHHTTSCCEEECBT
T ss_pred             ------------------------------ccCCCCcEEEEEECCCCcccc--c----CHHHHHHHHHhcCCceEEEEeC
Confidence                                          001248999999999997211  1    1223455565 67899999999


Q ss_pred             CChhhHHHHHHHHhhhhcCC
Q psy11649        551 LDPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~fg~  570 (890)
                      +.+.|++.++..|...+...
T Consensus       157 ~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          157 KEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             TTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.47  E-value=3.6e-07  Score=92.90  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=82.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|...+..+...  .+..    .-++|+|+|++.+.++ +.+ +.|+..++.+..                   
T Consensus        78 l~i~Dt~G~~~~~~~~~~--~~~~----~d~~ilv~D~~~~~s~-~~~~~~~~~~i~~~~~-------------------  131 (205)
T 1gwn_A           78 LSLWDTSGSPYYDNVRPL--SYPD----SDAVLICFDISRPETL-DSVLKKWKGEIQEFCP-------------------  131 (205)
T ss_dssp             EEEEEECCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT-------------------
T ss_pred             EEEEeCCCcHhhhHHHHh--hccC----CCEEEEEEECCCHHHH-HHHHHHHHHHHHHHCC-------------------
Confidence            589999998766665554  2221    2379999999999988 555 889877654210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-------HHHHHHHHHHHHHHHcC-C
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-------KKRIAVQCLRYLAHVNG-A  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-------~~d~Iq~~lR~fcl~yG-A  543 (890)
                                                        ++|+||||||+|+..+....       ....-...++.+|..+| .
T Consensus       132 ----------------------------------~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  177 (205)
T 1gwn_A          132 ----------------------------------NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA  177 (205)
T ss_dssp             ----------------------------------TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             ----------------------------------CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCC
Confidence                                              37899999999997431100       00111345778888888 5


Q ss_pred             ceeEeccC-ChhhHHHHHHHHhhhhc
Q psy11649        544 SLLFHSSL-DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       544 sL~ftS~K-~~~n~~~l~kyi~hr~f  568 (890)
                      ..|.||+| .+.|++.++.+|...+.
T Consensus       178 ~~~e~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          178 TYIECSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccCCcCHHHHHHHHHHHHh
Confidence            78999999 68999999999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.44  E-value=7.9e-08  Score=97.50  Aligned_cols=115  Identities=20%  Similarity=0.263  Sum_probs=82.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.++.|+..+..+.                    
T Consensus        85 ~l~l~Dt~G~~~~~~~~~~--~~~~----~d~iilV~D~~~~~s~-~~~~~~l~~i~~~~--------------------  137 (217)
T 2f7s_A           85 HLQLWDTAGQERFRSLTTA--FFRD----AMGFLLMFDLTSQQSF-LNVRNWMSQLQANA--------------------  137 (217)
T ss_dssp             EEEEEEEESHHHHHHHHHH--HHTT----CCEEEEEEETTCHHHH-HHHHHHHHTCCCCC--------------------
T ss_pred             EEEEEECCCcHhHHhHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhc--------------------
Confidence            3589999998666655444  2222    2379999999999887 66666654321100                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                     ...++|+|||+||+|+...-+     .-...++.+|..+|+..|.||++
T Consensus       138 -------------------------------~~~~~piilV~NK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~~~Sa~  181 (217)
T 2f7s_A          138 -------------------------------YCENPDIVLIGNKADLPDQRE-----VNERQARELADKYGIPYFETSAA  181 (217)
T ss_dssp             -------------------------------TTTCCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             -------------------------------CcCCCCEEEEEECCccccccc-----cCHHHHHHHHHHCCCcEEEEECC
Confidence                                           012589999999999964211     11345677888999999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++.+|...+..
T Consensus       182 ~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          182 TGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.42  E-value=1e-06  Score=88.99  Aligned_cols=115  Identities=21%  Similarity=0.223  Sum_probs=83.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|...+..+...  .+.    ..-++|+|+|.+.+.++ +.+ +.|+..++...                    
T Consensus        80 l~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  132 (204)
T 4gzl_A           80 LGLWDTAGLEDYDRLRPL--SYP----QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHC--------------------  132 (204)
T ss_dssp             EEEEEECCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence            469999999666655544  222    22379999999999998 555 48887776521                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHH-H------HHHHHHHHHHHHcCCc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKK-R------IAVQCLRYLAHVNGAS  544 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~-d------~Iq~~lR~fcl~yGAs  544 (890)
                                                       -++|+|||+||+|+...-+.+.. +      .-....+.+|..+|+.
T Consensus       133 ---------------------------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (204)
T 4gzl_A          133 ---------------------------------PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  179 (204)
T ss_dssp             ---------------------------------SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             ---------------------------------CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCc
Confidence                                             03789999999999743111110 0      1235678899999976


Q ss_pred             -eeEeccCChhhHHHHHHHHhhhh
Q psy11649        545 -LLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       545 -L~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                       .|.+|+|.+.|++.++..|...+
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          180 KYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHh
Confidence             99999999999999999998765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.42  E-value=6.7e-07  Score=90.36  Aligned_cols=118  Identities=18%  Similarity=0.216  Sum_probs=86.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHH-HHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEA-ETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL-~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      -..+|+..|...+..+...  .+.    ..-++++|+|++.|.++ +.+ +.|+..++....                  
T Consensus        74 ~~~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  128 (207)
T 2fv8_A           74 ELALWDTAGQEDYDRLRPL--SYP----DTDVILMCFSVDSPDSL-ENIPEKWVPEVKHFCP------------------  128 (207)
T ss_dssp             EEEEEECTTCTTCTTTGGG--GCT----TCCEEEEEEETTCHHHH-HHHHHTHHHHHHHHST------------------
T ss_pred             EEEEEECCCcHHHHHHHHh--hcC----CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC------------------
Confidence            3589999998766655444  222    12378999999999988 555 788777654110                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHH---------HHHHHHHHHHHc
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRI---------AVQCLRYLAHVN  541 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~---------Iq~~lR~fcl~y  541 (890)
                                                         ++|+|||+||+|+...-  +..+.         -....+.+|..+
T Consensus       129 -----------------------------------~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~  171 (207)
T 2fv8_A          129 -----------------------------------NVPIILVANKKDLRSDE--HVRTELARMKQEPVRTDDGRAMAVRI  171 (207)
T ss_dssp             -----------------------------------TCCEEEEEECGGGGGCH--HHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred             -----------------------------------CCCEEEEEEchhhhccc--cchhhhhhcccCCCCHHHHHHHHHhc
Confidence                                               37899999999997431  11111         133567889999


Q ss_pred             CC-ceeEeccCChhhHHHHHHHHhhhhcCCC
Q psy11649        542 GA-SLLFHSSLDPGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       542 GA-sL~ftS~K~~~n~~~l~kyi~hr~fg~~  571 (890)
                      |+ ..|.||++.+.|++.++.+|...++.-.
T Consensus       172 ~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          172 QAYDYLECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             TCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            99 8999999999999999999999887543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.41  E-value=4.4e-08  Score=98.36  Aligned_cols=112  Identities=14%  Similarity=0.182  Sum_probs=76.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|+..+..+...  .+..    .-++|+|+|++.+.++ +.++.|+..++.+..                    
T Consensus        84 ~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  136 (199)
T 3l0i_B           84 LQIWDTAGQERFRTITSS--YYRG----AHGIIVVYDVTDQESF-NNVKQWLQEIDRYAS--------------------  136 (199)
T ss_dssp             EEEECCTTCTTCCCCSCC----CC----CSEEEECC-CCCSHHH-HHHHHHHHHHHSCC---------------------
T ss_pred             EEEEECCCcHhHHHHHHH--Hhhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcc--------------------
Confidence            589999998766665554  2222    2378999999999987 888888876632100                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+|||+||+|+...-..     -...++.+|..+|+..|.+|++.
T Consensus       137 --------------------------------~~~p~ilv~nK~Dl~~~~~v-----~~~~~~~~~~~~~~~~~~vSA~~  179 (199)
T 3l0i_B          137 --------------------------------ENVNKLLVGNKCDLTTKKVV-----DYTTAKEFADSLGIPFLETSAKN  179 (199)
T ss_dssp             --------------------------------CCSEEEEC-CCSSCC--CCC-----CSCC-CHHHHTTTCCBCCCCC--
T ss_pred             --------------------------------CCCCEEEEEECccCCccccC-----CHHHHHHHHHHcCCeEEEEECCC
Confidence                                            14799999999998632110     01235678889999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|...+.
T Consensus       180 g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          180 ATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             -HHHHHHHHHHTTTTT
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.40  E-value=5.2e-07  Score=88.08  Aligned_cols=113  Identities=11%  Similarity=0.042  Sum_probs=80.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|....    .+   +..    .-++|+|+|++.|.++ +.++.|+..++.....                   
T Consensus        56 l~i~Dt~G~~~~----~~---~~~----~d~~ilv~D~~~~~s~-~~~~~~~~~i~~~~~~-------------------  104 (178)
T 2iwr_A           56 VLIREEAGAPDA----KF---SGW----ADAVIFVFSLEDENSF-QAVSRLHGQLSSLRGE-------------------  104 (178)
T ss_dssp             EEEEECSSSCCH----HH---HHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCS-------------------
T ss_pred             EEEEECCCCchh----HH---HHh----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHHhc-------------------
Confidence            589999998541    12   221    2378999999999988 8899998877663321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K  551 (890)
                               .                     .-++|+||||||+|+...-+   ...-...++.+|..+ |+..|.||+|
T Consensus       105 ---------~---------------------~~~~piilv~nK~Dl~~~~~---~~v~~~~~~~~~~~~~~~~~~~~Sa~  151 (178)
T 2iwr_A          105 ---------G---------------------RGGLALALVGTQDRISASSP---RVVGDARARALXADMKRCSYYETXAT  151 (178)
T ss_dssp             ---------S---------------------SCCCEEEEEEECTTCBTTBC---CCSCHHHHHHHHHHHSSEEEEEEBTT
T ss_pred             ---------C---------------------CCCCCEEEEEECcccccccc---CcCCHHHHHHHHHhhcCCeEEEEecc
Confidence                     0                     01489999999999852111   111123345667666 6889999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...++.
T Consensus       152 ~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          152 YGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999887764

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.38  E-value=2.7e-06  Score=95.92  Aligned_cols=105  Identities=11%  Similarity=-0.004  Sum_probs=65.8

Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC--CeEEEEeccC---------------------CCCHHHHHH
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLD---------------------PGLVKRTRD  230 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G--a~l~etSAK~---------------------~~nId~Lk~  230 (890)
                      ...|++.++|+.|.-  +.. ...-....+++++...+  +.++.+||+.                     +.|++++.+
T Consensus       223 t~kp~~y~~Nv~e~~--~~~-~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~  299 (392)
T 1ni3_A          223 TAKPVIYLVNMSERD--FLR-QKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIV  299 (392)
T ss_dssp             GGSCEEEEEECCHHH--HTT-TCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHH
T ss_pred             ccCceEEEEEecchh--hcc-cchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHH
Confidence            458999999999841  000 00112345778887776  8899999986                     577888766


Q ss_pred             HHHHHHhccCcccccccCCCCcccccCCCccccccccCCCCCCCCccccccccccccchhHHHhhcc
Q psy11649        231 ILNHYAFSSHLASAVNFDYNKPIFVPFGTDSVASIEGTTHGKDASLESGGRGFNRSRGMKFEKKRGW  297 (890)
Q Consensus       231 ~I~~~lf~~~~~~~~~~d~~kpl~Ip~G~Ds~~~I~~pl~r~~~~~~~~~~~~~~~~~~~f~~~~~w  297 (890)
                      ...+++ +...            +-+.|.+..   ..=+++++++-.+.+..+|.++...|-++.++
T Consensus       300 ~~~~~L-~l~~------------~ft~g~~e~---rawti~~G~~a~~aag~IH~d~~~gfi~ae~~  350 (392)
T 1ni3_A          300 TGYNAL-NLIN------------YFTCGEDEV---RSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIM  350 (392)
T ss_dssp             HHHHHT-TEEE------------EEECCSSEE---EEEEEETTCBHHHHHHHHCHHHHHTCSEEEEE
T ss_pred             HHHHHh-CCEE------------EECCCCCcc---eeEEeCCCCcHHHHccccchhhhhccEEEEEC
Confidence            666554 1111            112333321   11115567777778888899998888777765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.37  E-value=4.7e-07  Score=89.79  Aligned_cols=119  Identities=13%  Similarity=0.233  Sum_probs=84.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+..|...+..+...  .+.    ...++++|+|+|.+.+-++.++.|+..++.+.                    
T Consensus        57 ~~~i~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--------------------  110 (184)
T 2zej_A           57 VLNVWDFAGREEFYSTHPH--FMT----QRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--------------------  110 (184)
T ss_dssp             EEEEEEECSHHHHHTTSHH--HHH----HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--------------------
T ss_pred             EEEEEecCCCHHHHHhhHH--Hcc----CCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--------------------
Confidence            4689999998665554443  122    13467889999999533388888987665410                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc----eeE
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS----LLF  547 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs----L~f  547 (890)
                                                       -++|+||||||+|+...  .+..+.+......+|.++|+.    .+.
T Consensus       111 ---------------------------------~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T 2zej_A          111 ---------------------------------SSSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRGFPAIRDYHF  155 (184)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTTSCEEEEEEE
T ss_pred             ---------------------------------CCCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcCCcchhheEE
Confidence                                             03789999999998631  111123455567788889987    899


Q ss_pred             eccCChh-hHHHHHHHHhhhhcCCC
Q psy11649        548 HSSLDPG-LVKRTRDILNHYAFSSH  571 (890)
Q Consensus       548 tS~K~~~-n~~~l~kyi~hr~fg~~  571 (890)
                      ||+|.+. +++.|++.|...+..++
T Consensus       156 ~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          156 VNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             EecccCchhHHHHHHHHHHHHhccc
Confidence            9999996 99999999998887654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.37  E-value=6.7e-07  Score=88.46  Aligned_cols=122  Identities=11%  Similarity=0.043  Sum_probs=79.1

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --+.+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.+..|+..+..+..                  
T Consensus        60 ~~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------  114 (187)
T 1zj6_A           60 TRFLMWDIGGQESLRSSWNT--YYTN----TEFVIVVVDSTDRERI-SVTREELYKMLAHED------------------  114 (187)
T ss_dssp             EEEEEEECCC----CGGGHH--HHTT----CCEEEEEEETTCTTTH-HHHHHHHHHHHTSGG------------------
T ss_pred             EEEEEEECCCCHhHHHHHHH--HhcC----CCEEEEEEeCCCHHHH-HHHHHHHHHHHhchh------------------
Confidence            34589999999766665443  2221    2379999999999887 667777655443111                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS  549 (890)
                                                       ..++|+|||+||+|+....+.+   .+.+.+..- +...|...+.||
T Consensus       115 ---------------------------------~~~~piilv~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~S  158 (187)
T 1zj6_A          115 ---------------------------------LRKAGLLIFANKQDVKECMTVA---EISQFLKLTSIKDHQWHIQACC  158 (187)
T ss_dssp             ---------------------------------GTTCEEEEEEECTTSTTCCCHH---HHHHHHTGGGCCSSCEEEEECB
T ss_pred             ---------------------------------hCCCeEEEEEECCCCcCCCCHH---HHHHHhChhhhcCCCcEEEEcc
Confidence                                             1147999999999998544332   233332211 224677899999


Q ss_pred             cCChhhHHHHHHHHhhhhcCCCCC
Q psy11649        550 SLDPGLVKRTRDILNHYAFSSHLA  573 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~fg~~~~  573 (890)
                      ++.+.|++.+++.|...+...+.+
T Consensus       159 a~~g~gi~~l~~~l~~~~~~~~~~  182 (187)
T 1zj6_A          159 ALTGEGLCQGLEWMMSRLKIRLEH  182 (187)
T ss_dssp             TTTTBTHHHHHHHHHHHHCC----
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999988765443

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.37  E-value=4.9e-07  Score=90.04  Aligned_cols=110  Identities=12%  Similarity=0.070  Sum_probs=80.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|...+.    +   +..    .-++++|+|++.+.++ +.++.|+..++.+..                    
T Consensus        69 l~i~Dt~G~~~~~----~---~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  116 (184)
T 3ihw_A           69 LLIRDEGGPPELQ----F---AAW----VDAVVFVFSLEDEISF-QTVYNYFLRLCSFRN--------------------  116 (184)
T ss_dssp             EEEEECSSSCCHH----H---HHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHTTSC--------------------
T ss_pred             EEEEECCCChhhh----e---ecC----CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            4789999985544    2   111    2379999999999988 888889877654211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K  551 (890)
                                                     ..++|+||||||+|+...-   ....-...++.+|..+| +..|.||+|
T Consensus       117 -------------------------------~~~~piilv~nK~Dl~~~~---~~~v~~~~~~~~~~~~~~~~~~e~Sa~  162 (184)
T 3ihw_A          117 -------------------------------ASEVPMVLVGTQDAISAAN---PRVIDDSRARKLSTDLKRCTYYETCAT  162 (184)
T ss_dssp             -------------------------------GGGSCEEEEEECTTCBTTB---CCCSCHHHHHHHHHHTTTCEEEEEBTT
T ss_pred             -------------------------------CCCCCEEEEEECccccccc---ccccCHHHHHHHHHHcCCCeEEEecCC
Confidence                                           0137999999999985211   11122345677888998 889999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++..|...+.
T Consensus       163 ~~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          163 YGLNVERVFQDVAQKVV  179 (184)
T ss_dssp             TTBTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.37  E-value=3.4e-07  Score=109.43  Aligned_cols=109  Identities=13%  Similarity=0.025  Sum_probs=69.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC------C--CCCC------------CccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN------D--TPKP------------TLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~------~--~~kp------------tigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      .+|+|+|...+|||||..+|+...      +  ....            ++++.-.   .......+.+++|+||||+..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~---~~~~~~~~~~iNlIDTPGH~D   79 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTG---ITSFQWENTKVNIIDTPGHMD   79 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCC---CCCCBCSSCBCCCEECCCSSS
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEee---eEEEEECCEEEEEEECCCcHH
Confidence            468999999999999999996410      0  0000            1121100   000111233799999999998


Q ss_pred             hhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         96 RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        96 ~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      |..-+... +-       +|++|+|+|...--.- .....|.+.. +                                .
T Consensus        80 F~~Ev~raL~~-------~DgavlVVDa~~GV~~-qT~~v~~~a~-~--------------------------------~  118 (638)
T 3j25_A           80 FLAEVYRSLSV-------LDGAILLISAKDGVQA-QTRILFHALR-K--------------------------------M  118 (638)
T ss_dssp             THHHHHHHHTT-------CSEEECCEESSCTTCS-HHHHHHHHHH-H--------------------------------H
T ss_pred             HHHHHHHHHHH-------hCEEEEEEeCCCCCcH-HHHHHHHHHH-H--------------------------------c
Confidence            86555444 43       8999999999984433 2334444321 1                                1


Q ss_pred             CCcEEEEeecccCC
Q psy11649        175 PVPLILIGGKYDLF  188 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~  188 (890)
                      ++|.+++.||+|..
T Consensus       119 ~lp~i~~INKmDr~  132 (638)
T 3j25_A          119 GIPTIFFINKIDQN  132 (638)
T ss_dssp             TCSCEECCEECCSS
T ss_pred             CCCeEEEEeccccc
Confidence            68999999999974

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.36  E-value=1.1e-06  Score=84.64  Aligned_cols=117  Identities=13%  Similarity=0.055  Sum_probs=80.9

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --+.+|+..|...+..+...  .+.    ..-++++|+|.+.|.++ +.+..|+..+..+..                  
T Consensus        51 ~~~~~~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------  105 (171)
T 1upt_A           51 LKFQVWDLGGLTSIRPYWRC--YYS----NTDAVIYVVDSCDRDRI-GISKSELVAMLEEEE------------------  105 (171)
T ss_dssp             EEEEEEEECCCGGGGGGGGG--GCT----TCSEEEEEEETTCCTTH-HHHHHHHHHHHTCGG------------------
T ss_pred             EEEEEEECCCChhhhHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHhchh------------------
Confidence            34689999999776665544  232    22379999999999887 555555543321000                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS  549 (890)
                                                       ..++|++||+||+|+....+.   +.+.+.+ ..++...|...+.||
T Consensus       106 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S  149 (171)
T 1upt_A          106 ---------------------------------LRKAILVVFANKQDMEQAMTS---SEMANSLGLPALKDRKWQIFKTS  149 (171)
T ss_dssp             ---------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHHTGGGCTTSCEEEEECC
T ss_pred             ---------------------------------hCCCEEEEEEECCCCcCCCCH---HHHHHHhCchhccCCceEEEECc
Confidence                                             014899999999999865432   2233333 234556778899999


Q ss_pred             cCChhhHHHHHHHHhhhhc
Q psy11649        550 SLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++.+.|++.++.+|...+.
T Consensus       150 a~~~~gi~~l~~~l~~~i~  168 (171)
T 1upt_A          150 ATKGTGLDEAMEWLVETLK  168 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.35  E-value=5.6e-07  Score=86.33  Aligned_cols=117  Identities=15%  Similarity=0.068  Sum_probs=77.7

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --+++|+..|...+..+...  .+..    .-++++|+|++.|.++ +.+..|+..+.....                  
T Consensus        44 ~~~~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------   98 (164)
T 1r8s_A           44 ISFTVWDVGGQDKIRPLWRH--YFQN----TQGLIFVVDSNDRERV-NEAREELMRMLAEDE------------------   98 (164)
T ss_dssp             CEEEEEECCCCGGGHHHHHH--HTTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG------------------
T ss_pred             EEEEEEEcCCChhhHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhchh------------------
Confidence            34689999999776665544  2222    2378999999999887 666666654432100                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS  549 (890)
                                                       ..++|+|||+||+|+....+.   +.+.+.+ ..++...+...+.||
T Consensus        99 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S  142 (164)
T 1r8s_A           99 ---------------------------------LRDAVLLVFANKQDLPNAMNA---AEITDKLGLHSLRHRNWYIQATC  142 (164)
T ss_dssp             ---------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECB
T ss_pred             ---------------------------------hcCCeEEEEEECcCCcCCCCH---HHHHHHhCcccccCccEEEEEcc
Confidence                                             014799999999999754332   2222222 122333556789999


Q ss_pred             cCChhhHHHHHHHHhhhhc
Q psy11649        550 SLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~f  568 (890)
                      +|.+.|++.++.+|...+.
T Consensus       143 a~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC-
T ss_pred             cCCCcCHHHHHHHHHHHHh
Confidence            9999999999999987763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.33  E-value=9.5e-07  Score=87.04  Aligned_cols=115  Identities=12%  Similarity=0.083  Sum_probs=77.7

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --..+|+..|...+..+...  .+..    .-++++|+|.+.+.++ +.+..|+..+..+..                  
T Consensus        65 ~~~~i~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~------------------  119 (181)
T 2h17_A           65 TRFLMWDIGGQESLRSSWNT--YYTN----TEFVIVVVDSTDRERI-SVTREELYKMLAHED------------------  119 (181)
T ss_dssp             EEEEEEEESSSGGGTCGGGG--GGTT----CCEEEEEEETTCTTTH-HHHHHHHHHHHTCGG------------------
T ss_pred             EEEEEEECCCCHhHHHHHHH--Hhcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhChh------------------
Confidence            34589999999776665544  2322    2379999999999887 666666644332100                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS  549 (890)
                                                       ..++|+|||+||+|+....+.++   +.+.+. ..+...|...|.||
T Consensus       120 ---------------------------------~~~~piilv~NK~Dl~~~~~~~~---i~~~~~~~~~~~~~~~~~~~S  163 (181)
T 2h17_A          120 ---------------------------------LRKAGLLIFANKQDVKECMTVAE---ISQFLKLTSIKDHQWHIQACC  163 (181)
T ss_dssp             ---------------------------------GTTCEEEEEEECTTSTTCCCHHH---HHHHTTGGGCCSSCEEEEECB
T ss_pred             ---------------------------------hCCCeEEEEEECCCcccCCCHHH---HHHHhCcccccCCceEEEEcc
Confidence                                             12489999999999976444332   222221 11233567899999


Q ss_pred             cCChhhHHHHHHHHhhh
Q psy11649        550 SLDPGLVKRTRDILNHY  566 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr  566 (890)
                      +|.+.|++.++..|..+
T Consensus       164 a~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          164 ALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTTTBTHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHhh
Confidence            99999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.33  E-value=1.5e-06  Score=86.11  Aligned_cols=119  Identities=11%  Similarity=0.087  Sum_probs=80.4

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --+.+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.+..|+..+..+...                 
T Consensus        67 ~~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~-----------------  122 (190)
T 2h57_A           67 LSFTVFDMSGQGRYRNLWEH--YYKE----GQAIIFVIDSSDRLRM-VVAKEELDTLLNHPDI-----------------  122 (190)
T ss_dssp             CEEEEEEECCSTTTGGGGGG--GGGG----CSEEEEEEETTCHHHH-HHHHHHHHHHHHSTTT-----------------
T ss_pred             EEEEEEECCCCHHHHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhChhh-----------------
Confidence            35689999998777766554  2322    2378999999999877 6666676555431110                 


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHH-HHHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~-fcl~yGAsL~ftS  549 (890)
                                                      .+.++|+|||+||+|+....+.+   .+.+.+.. -....|...+.||
T Consensus       123 --------------------------------~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~S  167 (190)
T 2h57_A          123 --------------------------------KHRRIPILFFANKMDLRDAVTSV---KVSQLLCLENIKDKPWHICASD  167 (190)
T ss_dssp             --------------------------------TTSCCCEEEEEECTTSTTCCCHH---HHHHHHTGGGCCSSCEEEEECB
T ss_pred             --------------------------------ccCCCeEEEEEeCcCcccCCCHH---HHHHHhChhhccCCceEEEEcc
Confidence                                            01258999999999998544332   23332220 0012477899999


Q ss_pred             cCChhhHHHHHHHHhhhhc
Q psy11649        550 SLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++.+.|++.++++|...+-
T Consensus       168 a~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          168 AIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TTTTBTHHHHHHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999999999999987763

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.33  E-value=6e-07  Score=89.11  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=84.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+..    .-++++|+|++.|.++ +.+..|+..+.+....                   
T Consensus        58 ~~l~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  111 (199)
T 2gf0_A           58 LQITDTTGSHQFPAMQRL--SISK----GHAFILVFSVTSKQSL-EELGPIYKLIVQIKGS-------------------  111 (199)
T ss_dssp             EEEEECCGGGSCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEeCCChHHhHHHHHH--hhcc----CCEEEEEEECcCHHHH-HHHHHHHHHHHHHhcC-------------------
Confidence            579999998666655444  2222    2378999999999987 8888888777654321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     ..++|+|||+||+|+...-      .....++.+|..+|+..|.+|++.
T Consensus       112 -------------------------------~~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~~Sa~~  154 (199)
T 2gf0_A          112 -------------------------------VEDIPVMLVGNKCDETQRE------VDTREAQAVAQEWKCAFMETSAKM  154 (199)
T ss_dssp             -------------------------------GGGSCEEEEEECTTCSSCS------SCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             -------------------------------CCCCCEEEEEECccCCccc------cCHHHHHHHHHHhCCeEEEEecCC
Confidence                                           0137899999999997421      112345567888999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|...+..
T Consensus       155 ~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          155 NYNVKELFQELLTLETR  171 (199)
T ss_dssp             TBSHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.31  E-value=9.3e-06  Score=98.14  Aligned_cols=115  Identities=11%  Similarity=-0.036  Sum_probs=71.9

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcC------CC--------------CCCCCccceeEEEEEE--ec--cccceEEEEE
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEK------ND--------------TPKPTLALEYIYARKS--GK--TVMKDICHLW   88 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~------~~--------------~~kptigvdY~f~~~~--g~--~~~k~~l~Iw   88 (890)
                      .+-.+|+|||.-.+|||||..+|+..      .+              ...-++++.-......  +.  ...+..++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            34678999999999999999999731      00              0111122111111111  11  0113489999


Q ss_pred             EcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccc
Q psy11649         89 ELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRD  167 (890)
Q Consensus        89 DlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d  167 (890)
                      ||||+..|..-+... +-       +|++|+|+|...--.. .....|.+..++                          
T Consensus        91 DTPGHvDF~~Ev~~aLr~-------~DgavlvVDaveGV~~-qT~~v~~~a~~~--------------------------  136 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRV-------LDGAVVVFCGTSGVEP-QSETVWRQANKY--------------------------  136 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHH-------CSEEEEEEETTTCSCH-HHHHHHHHHHHH--------------------------
T ss_pred             eCCCCcccHHHHHHHHHH-------hCeEEEEEECCCCCch-hHHHHHHHHHHc--------------------------
Confidence            999998886555544 54       8999999999985543 333444442222                          


Q ss_pred             cccccCCCCcEEEEeecccCC
Q psy11649        168 KGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       168 ~~li~~l~IPiIVVgNK~Dl~  188 (890)
                             ++|.++++||+|..
T Consensus       137 -------~lp~i~~iNKiDr~  150 (709)
T 4fn5_A          137 -------GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             -------TCCEEEEEECSSST
T ss_pred             -------CCCeEEEEcccccc
Confidence                   69999999999974

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.31  E-value=2e-06  Score=86.49  Aligned_cols=114  Identities=15%  Similarity=0.120  Sum_probs=81.3

Q ss_pred             eEEEEeCCCccccc-ccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~-Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|...+.. +.+.  .+.    ..-++|+|+|++.+.++ +.++.|+..++.+..                   
T Consensus        74 l~i~Dt~g~~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  127 (195)
T 3cbq_A           74 LVVYDIWEQGDAGGWLRDH--CLQ----TGDAFLIVFSVTDRRSF-SKVPETLLRLRAGRP-------------------  127 (195)
T ss_dssp             EEEECCCCCSGGGHHHHHH--HHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHST-------------------
T ss_pred             EEEEecCCCccchhhhHHH--hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            47899999865443 2222  111    12378999999999987 888889876654211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      ..++|+||||||+|+...-.-     -...++.+|..+|+..+.||+|
T Consensus       128 --------------------------------~~~~piilv~nK~Dl~~~~~v-----~~~~~~~~a~~~~~~~~e~Sa~  170 (195)
T 3cbq_A          128 --------------------------------HHDLPVILVGNKSDLARSREV-----SLEEGRHLAGTLSCKHIETSAA  170 (195)
T ss_dssp             --------------------------------TSCCCEEEEEECTTCTTTCCS-----CHHHHHHHHHHTTCEEEEEBTT
T ss_pred             --------------------------------CCCCCEEEEeechhccccCCc-----CHHHHHHHHHHhCCEEEEEcCC
Confidence                                            014899999999999742110     1123456788889999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|...+..
T Consensus       171 ~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          171 LHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             TTBSHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999887753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.26  E-value=9.4e-07  Score=87.77  Aligned_cols=116  Identities=14%  Similarity=0.129  Sum_probs=77.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+..    .-++|+|+|.+.+.++ +.+..|+..+..+..                   
T Consensus        68 ~~~l~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~D~~~~~s~-~~~~~~~~~~~~~~~-------------------  121 (188)
T 1zd9_A           68 TIKLWDIGGQPRFRSMWER--YCRG----VSAIVYMVDAADQEKI-EASKNELHNLLDKPQ-------------------  121 (188)
T ss_dssp             EEEEEEECCSHHHHTTHHH--HHTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred             EEEEEECCCCHhHHHHHHH--HHcc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhCcc-------------------
Confidence            4589999998666555444  2221    2378999999999887 666666644322100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~  550 (890)
                                                      ..++|+|||+||+|+....+.++   +...+ ..++...+...|.||+
T Consensus       122 --------------------------------~~~~piilv~NK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~SA  166 (188)
T 1zd9_A          122 --------------------------------LQGIPVLVLGNKRDLPGALDEKE---LIEKMNLSAIQDREICCYSISC  166 (188)
T ss_dssp             --------------------------------GTTCCEEEEEECTTSTTCCCHHH---HHHHTTGGGCCSSCEEEEECCT
T ss_pred             --------------------------------cCCCCEEEEEECCCCccCCCHHH---HHHHhChhhhccCCeeEEEEEC
Confidence                                            12489999999999986543322   22211 1222345678899999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      +.+.|++.++.+|...+.
T Consensus       167 ~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          167 KEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             TTCTTHHHHHHHHHHTCC
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999987664

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.24  E-value=2.1e-06  Score=92.49  Aligned_cols=118  Identities=19%  Similarity=0.205  Sum_probs=84.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  .+.    ..-++++|+|.+.+.++-+..+.|+..++.+..                    
T Consensus       205 ~~l~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--------------------  258 (332)
T 2wkq_A          205 LGLWDTAGLEDYDRLRPL--SYP----QTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP--------------------  258 (332)
T ss_dssp             EEEEEECCCGGGTTTGGG--GCT----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--------------------
T ss_pred             EEEEeCCCchhhhHHHHH--hcc----CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC--------------------
Confidence            469999998666655444  222    123789999999999883333478776654110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-c
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA-S  544 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA-s  544 (890)
                                                       ++|+||||||+|+....+...       ...-.+.++.+|..+|+ .
T Consensus       259 ---------------------------------~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  305 (332)
T 2wkq_A          259 ---------------------------------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  305 (332)
T ss_dssp             ---------------------------------TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             ---------------------------------CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcE
Confidence                                             378999999999964311100       01124567789999998 8


Q ss_pred             eeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        545 LLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       545 L~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      .|.||+|.+.|++.++..|...++.
T Consensus       306 ~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          306 YLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999999887764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.24  E-value=2e-06  Score=85.06  Aligned_cols=117  Identities=15%  Similarity=0.043  Sum_probs=78.9

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --..+|+..|...+..+...  .+.    ..-++++|+|.+.|.++ +.+..|+..+....                   
T Consensus        66 ~~~~~~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~-------------------  119 (189)
T 2x77_A           66 ISFEVWDLGGQTGVRPYWRC--YFS----DTDAVIYVVDSTDRDRM-GVAKHELYALLDED-------------------  119 (189)
T ss_dssp             EEEEEEEECCSSSSCCCCSS--SST----TCCEEEEEEETTCCTTH-HHHHHHHHHHHTCS-------------------
T ss_pred             EEEEEEECCCCHhHHHHHHH--Hhh----cCCEEEEEEeCCCHHHH-HHHHHHHHHHHhhh-------------------
Confidence            34589999999776665544  222    22378999999999887 55555554332100                   


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS  549 (890)
                                                      ...++|+|||+||+|+....+.   +.+.+.+. .++...+...+.||
T Consensus       120 --------------------------------~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S  164 (189)
T 2x77_A          120 --------------------------------ELRKSLLLIFANKQDLPDAASE---AEIAEQLGVSSIMNRTWTIVKSS  164 (189)
T ss_dssp             --------------------------------TTTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECC
T ss_pred             --------------------------------hcCCCeEEEEEECCCCcCCCCH---HHHHHHhChhhccCCceEEEEcc
Confidence                                            0014799999999999754332   22222222 23445567899999


Q ss_pred             cCChhhHHHHHHHHhhhhc
Q psy11649        550 SLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++.+.|++.++..|...+.
T Consensus       165 a~~~~gi~~l~~~l~~~i~  183 (189)
T 2x77_A          165 SKTGDGLVEGMDWLVERLR  183 (189)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHH
Confidence            9999999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.24  E-value=1.1e-06  Score=87.84  Aligned_cols=116  Identities=14%  Similarity=0.074  Sum_probs=73.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+..|...+..+...  .+.    ..-++++|+|.+.|.++ +.+..|+..+.....                   
T Consensus        74 ~~~i~Dt~G~~~~~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~l~~~~~~~~-------------------  127 (192)
T 2b6h_A           74 CFTVWDVGGQDKIRPLWRH--YFQ----NTQGLIFVVDSNDRERV-QESADELQKMLQEDE-------------------  127 (192)
T ss_dssp             EEEEEECC-----CTTHHH--HHH----TCCEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred             EEEEEECCCCHhHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHhcccc-------------------
Confidence            4689999999766655443  222    12378999999999887 666666654322100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~  550 (890)
                                                      ..++|+|||+||+|+....+.   +.+.+.+ ..++...+...+.||+
T Consensus       128 --------------------------------~~~~piilv~NK~Dl~~~~~~---~~i~~~~~~~~~~~~~~~~~~~SA  172 (192)
T 2b6h_A          128 --------------------------------LRDAVLLVFANKQDMPNAMPV---SELTDKLGLQHLRSRTWYVQATCA  172 (192)
T ss_dssp             --------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCSSCCEEEEECBT
T ss_pred             --------------------------------cCCCeEEEEEECCCCCCCCCH---HHHHHHhCcccccCCceEEEECcC
Confidence                                            014799999999999754331   2222221 1223345667899999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      +.+.|++.++.+|...+.
T Consensus       173 ~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          173 TQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             TTTBTHHHHHHHHHHHTT
T ss_pred             CCcCCHHHHHHHHHHHHh
Confidence            999999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.23  E-value=1.8e-06  Score=84.94  Aligned_cols=117  Identities=14%  Similarity=0.040  Sum_probs=79.5

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      --..+|+..|...+..+...  .+..    .-++++|+|.+.|.++ +.+..|+..+..+..                  
T Consensus        62 ~~~~~~Dt~G~~~~~~~~~~--~~~~----~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~------------------  116 (186)
T 1ksh_A           62 FKLNIWDVGGQKSLRSYWRN--YFES----TDGLIWVVDSADRQRM-QDCQRELQSLLVEER------------------  116 (186)
T ss_dssp             EEEEEEEECCSHHHHTTGGG--GCTT----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG------------------
T ss_pred             EEEEEEECCCCHhHHHHHHH--HhcC----CCEEEEEEECcCHHHH-HHHHHHHHHHHhChh------------------
Confidence            34589999999666655444  2221    2379999999999987 777777654432100                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS  549 (890)
                                                       ..++|+|||+||+|+....+.   +.+.+.+. ..+...+...+.||
T Consensus       117 ---------------------------------~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1ksh_A          117 ---------------------------------LAGATLLIFANKQDLPGALSC---NAIQEALELDSIRSHHWRIQGCS  160 (186)
T ss_dssp             ---------------------------------GTTCEEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECC
T ss_pred             ---------------------------------cCCCcEEEEEeCccCCCCCCH---HHHHHHhChhhccCCceEEEEee
Confidence                                             014799999999999764332   22322221 11224577899999


Q ss_pred             cCChhhHHHHHHHHhhhhc
Q psy11649        550 SLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~f  568 (890)
                      +|.+.|++.+++.|...+-
T Consensus       161 a~~~~gi~~l~~~l~~~i~  179 (186)
T 1ksh_A          161 AVTGEDLLPGIDWLLDDIS  179 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999987764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.20  E-value=9.3e-06  Score=88.18  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=84.3

Q ss_pred             eeEEEEeCCCccc-----ccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccc
Q psy11649        392 ICHLWELGSGTSR-----LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEH  466 (890)
Q Consensus       392 i~~vW~L~G~~~~-----~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~  466 (890)
                      -.+||+++|+..+     ..+...  .+.    ..-++|+|+|.+.+.++ +.++.|.+.+.+....             
T Consensus        53 ~l~i~Dt~G~~~~~~~~~~~~~~~--~~~----~ad~vi~V~D~t~~~s~-~~l~~~~~~l~~l~~~-------------  112 (307)
T 3r7w_A           53 TLNLWDCGGQDVFMENYFTKQKDH--IFQ----MVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKY-------------  112 (307)
T ss_dssp             EEEEEEECCSHHHHHHHHTTTHHH--HHT----TCSEEEEEEETTCSCHH-HHHHHHHHHHHHHHHH-------------
T ss_pred             EEEEEECCCcHHHhhhhhhhHHHH--Hhc----cCCEEEEEEECCChhhH-HHHHHHHHHHHHHHHh-------------
Confidence            4689999998554     222222  111    23379999999999987 8888888877664331             


Q ss_pred             cccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHH----HHHHHHHHHHHHcC
Q psy11649        467 FRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKR----IAVQCLRYLAHVNG  542 (890)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d----~Iq~~lR~fcl~yG  542 (890)
                                                           .-++|++|||||+|+..   ++++.    .....++.+|..+|
T Consensus       113 -------------------------------------~~~~piilv~NK~Dl~~---~~~r~~~~~v~~~~~~~~~~~~g  152 (307)
T 3r7w_A          113 -------------------------------------SPDAKIFVLLHKMDLVQ---LDKREELFQIMMKNLSETSSEFG  152 (307)
T ss_dssp             -------------------------------------CTTCEEEEEEECGGGSC---HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             -------------------------------------CCCCeEEEEEecccccc---hhhhhHHHHHHHHHHHHHHHHcC
Confidence                                                 01489999999999973   33443    67788999999999


Q ss_pred             ---CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        543 ---ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       543 ---AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                         ...+.||++. .++..++.-+...+.
T Consensus       153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence               6889999999 777777777776654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.20  E-value=2.7e-06  Score=84.95  Aligned_cols=114  Identities=18%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+..|...+..+...  .+.    ..-++++|+|.+.+.++ +.+..|+..+..+..                   
T Consensus        68 ~~~i~Dt~G~~~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  121 (190)
T 1m2o_B           68 KFTTFDLGGHIQARRLWKD--YFP----EVNGIVFLVDAADPERF-DEARVELDALFNIAE-------------------  121 (190)
T ss_dssp             EEEEEECCCSGGGTTSGGG--GCT----TCCEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred             EEEEEECCCCHHHHHHHHH--HHh----cCCEEEEEEECCChHHH-HHHHHHHHHHHcchh-------------------
Confidence            3589999999776655444  222    22379999999999987 777777755432100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH--------HHHcCC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL--------AHVNGA  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f--------cl~yGA  543 (890)
                                                      ..++|+|||+||+|+....+.+   .+++.+...        +...+.
T Consensus       122 --------------------------------~~~~piilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  166 (190)
T 1m2o_B          122 --------------------------------LKDVPFVILGNKIDAPNAVSEA---ELRSALGLLNTTGSQRIEGQRPV  166 (190)
T ss_dssp             --------------------------------GTTCCEEEEEECTTSTTCCCHH---HHHHHTTCSSCCC---CCSSCCE
T ss_pred             --------------------------------hcCCCEEEEEECCCCcCCCCHH---HHHHHhCCccccccccccccceE
Confidence                                            0147999999999997643332   233332211        223567


Q ss_pred             ceeEeccCChhhHHHHHHHHhhh
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      ..+.||+|.+.|++.++.+|..+
T Consensus       167 ~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          167 EVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEeECCcCCCHHHHHHHHHhh
Confidence            78999999999999999998764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.50  E-value=2e-07  Score=93.82  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=81.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHH-HHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAE-TFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~-~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|...+..+...  .+.    ..-++++|+|++.|.++ +.+. .|+..++.+..                   
T Consensus        80 l~i~Dt~G~~~~~~~~~~--~~~----~~d~iilv~D~~~~~s~-~~~~~~~~~~l~~~~~-------------------  133 (204)
T 3th5_A           80 LGLWDTAGQEDYDRLRPL--SYP----QTDVFLICFSLVSPASF-ENVRAKWYPEVRHHCP-------------------  133 (204)
Confidence            469999998666555444  222    12378999999999988 4443 77655543110                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH-------HHHHHHHHHHHHHHcCC-
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK-------KRIAVQCLRYLAHVNGA-  543 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~-------~d~Iq~~lR~fcl~yGA-  543 (890)
                                                        ++|+|||+||+|+...-+...       ...-...++.+|..+|+ 
T Consensus       134 ----------------------------------~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  179 (204)
T 3th5_A          134 ----------------------------------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  179 (204)
Confidence                                              378999999999974321111       12334667889999998 


Q ss_pred             ceeEeccCChhhHHHHHHHHhhhh
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ..|.||+|.+.|++.++.+|...+
T Consensus       180 ~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          180 KYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            899999999999999999987665

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.19  E-value=6.6e-06  Score=82.75  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=74.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+.+|...+..+...  .+..    .-++++|+|.+.+.++ +.+..|+..+..+..                   
T Consensus        70 ~l~i~Dt~G~~~~~~~~~~--~~~~----~d~~i~v~D~~~~~s~-~~~~~~~~~~~~~~~-------------------  123 (198)
T 1f6b_A           70 TFTTFDLGGHIQARRVWKN--YLPA----INGIVFLVDCADHERL-LESKEELDSLMTDET-------------------  123 (198)
T ss_dssp             EEEEEEECC----CCGGGG--GGGG----CSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred             EEEEEECCCcHhhHHHHHH--HHhc----CCEEEEEEECCCHHHH-HHHHHHHHHHHhCcc-------------------
Confidence            3489999998766665443  2221    2379999999999987 677777654432100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHH---------H---
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA---------H---  539 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc---------l---  539 (890)
                                                      ..++|+||||||+|+....+.|   .+++.+....         +   
T Consensus       124 --------------------------------~~~~piilv~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  168 (198)
T 1f6b_A          124 --------------------------------IANVPILILGNKIDRPEAISEE---RLREMFGLYGQTTGKGSVSLKEL  168 (198)
T ss_dssp             --------------------------------GTTSCEEEEEECTTSTTCCCHH---HHHHHHTCTTTCCCSSCCCTTTC
T ss_pred             --------------------------------cCCCcEEEEEECCCccccCCHH---HHHHHhCcccccccccccccccc
Confidence                                            0148999999999997543332   2333332211         0   


Q ss_pred             -HcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        540 -VNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       540 -~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                       ..++..+.||+|.+.|++.++.+|...+
T Consensus       169 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          169 NARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             cCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence             1456789999999999999999987643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.16  E-value=9.9e-06  Score=85.39  Aligned_cols=88  Identities=15%  Similarity=0.086  Sum_probs=68.4

Q ss_pred             ceEEEEEEeCCCc--hhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccc
Q psy11649        421 GFTLVLMLDLSRL--NSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFED  498 (890)
Q Consensus       421 ~~~viivlDlS~P--w~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  498 (890)
                      .-++|+|+|+++|  .++ +.++.|+..+..+...                                             
T Consensus       163 ad~vilV~D~t~~~~~s~-~~~~~~l~~i~~~~~~---------------------------------------------  196 (255)
T 3c5h_A          163 VDGFLLGIDVSRGMNRNF-DDQLKFVSNLYNQLAK---------------------------------------------  196 (255)
T ss_dssp             CCEEEEEEECBC----CH-HHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred             CCEEEEEEECCCCchhhH-HHHHHHHHHHHHHhcc---------------------------------------------
Confidence            4589999999999  887 8899999888765431                                             


Q ss_pred             ccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH-cCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        499 KGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       499 ~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~-yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                            -++|+||||||+|+..   +   ..+ ..++.+|.. .|+..|.||+|.+.|++.++..|...+
T Consensus       197 ------~~~piilV~NK~Dl~~---~---~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          197 ------TKKPIVVVLTKCDEGV---E---RYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             ------TTCCEEEEEECGGGBC---H---HHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ------CCCCEEEEEEcccccc---c---HHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence                  0379999999999852   1   112 467788887 489999999999999999999988764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.10  E-value=4.9e-06  Score=85.64  Aligned_cols=110  Identities=18%  Similarity=0.135  Sum_probs=76.9

Q ss_pred             EEEEeCCCcccccccccccccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+|++.|.......+      ..... ..-++|+|+|++.+.++ +.++.|...+++...                    
T Consensus        90 ~~~Dt~g~~~~~~~l------~~~~~~~a~~~ilVydvt~~~sf-~~~~~~~~~l~~~~~--------------------  142 (211)
T 2g3y_A           90 ILLDMWENKGENEWL------HDHCMQVGDAYLIVYSITDRASF-EKASELRIQLRRARQ--------------------  142 (211)
T ss_dssp             EEECCTTTTHHHHHH------HHCCCCCCSEEEEEEETTCHHHH-HHHHHHHHHHHTSGG--------------------
T ss_pred             EEeecCCCcchhhhH------HHHHHhhCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC--------------------
Confidence            679888774421111      11111 12378999999999988 788888765532100                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC--CChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN--LEPNKKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~--~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                                                     .-++|+||||+|+|+...  ...       ...+.+|..+|+..|.||+
T Consensus       143 -------------------------------~~~~piilVgNK~DL~~~r~v~~-------~e~~~~a~~~~~~~~e~SA  184 (211)
T 2g3y_A          143 -------------------------------TEDIPIILVGNKSDLVRCREVSV-------SEGRACAVVFDCKFIETSA  184 (211)
T ss_dssp             -------------------------------GTTSCEEEEEECTTCGGGCCSCH-------HHHHHHHHHHTCEEEECBT
T ss_pred             -------------------------------CCCCcEEEEEEChHHhcCceEeH-------HHHHHHHHHcCCEEEEEeC
Confidence                                           014899999999999642  221       2345678889999999999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      |.+.|++.++..|...+.
T Consensus       185 k~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          185 AVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999987663

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.08  E-value=4e-06  Score=81.94  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      .-+.+|+..|...+..+...  .+.    ..-++++|+|.+.+.++ +.+..|+..+..+.                   
T Consensus        62 ~~~~i~Dt~G~~~~~~~~~~--~~~----~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~-------------------  115 (183)
T 1moz_A           62 LKLNVWDLGGQTSIRPYWRC--YYA----DTAAVIFVVDSTDKDRM-STASKELHLMLQEE-------------------  115 (183)
T ss_dssp             EEEEEEEEC----CCTTGGG--TTT----TEEEEEEEEETTCTTTH-HHHHHHHHHHTTSS-------------------
T ss_pred             EEEEEEECCCCHhHHHHHHH--Hhc----cCCEEEEEEECCCHHHH-HHHHHHHHHHHcCh-------------------
Confidence            34589999998766555443  222    23479999999999887 66666654332100                   


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHH-HHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYL-AHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~f-cl~yGAsL~ftS  549 (890)
                                                      ...++|+|||+||+|+....+.+   .+.+.+... +...+...+.||
T Consensus       116 --------------------------------~~~~~piilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~S  160 (183)
T 1moz_A          116 --------------------------------ELQDAALLVFANKQDQPGALSAS---EVSKELNLVELKDRSWSIVASS  160 (183)
T ss_dssp             --------------------------------TTSSCEEEEEEECTTSTTCCCHH---HHHHHTTTTTCCSSCEEEEEEB
T ss_pred             --------------------------------hhCCCeEEEEEECCCCCCCCCHH---HHHHHhCcccccCCceEEEEcc
Confidence                                            01248999999999997543322   222222111 122455789999


Q ss_pred             cCChhhHHHHHHHHhhhhc
Q psy11649        550 SLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++.+.|++.++.+|...+.
T Consensus       161 a~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          161 AIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             GGGTBTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHH
Confidence            9999999999999987653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.05  E-value=1.9e-06  Score=96.32  Aligned_cols=145  Identities=14%  Similarity=0.042  Sum_probs=84.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC-----C-C--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh---
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK-----N-D--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF---  103 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~-----~-~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~---  103 (890)
                      ..+|+++|.+|||||||+|+|++.     . .  ...|+++.+.    .......  .+.++||||......+....   
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~----~~~~~~~--~~~liDtPG~~~~~~~~~~l~~~  235 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM----IEIPLES--GATLYDTPGIINHHQMAHFVDAR  235 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE----EEEECST--TCEEEECCSCCCCSSGGGGSCTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee----EEEEeCC--CeEEEeCCCcCcHHHHHHHHhHH
Confidence            457999999999999999999984     1 1  2234444442    1111111  37999999975432222111   


Q ss_pred             -hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        104 -SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       104 -r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                       ....+.....+.+++++|..+.--+ ..+..                                 ...+...++|++++.
T Consensus       236 ~l~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~---------------------------------l~~l~~~~~~~~~v~  281 (369)
T 3ec1_A          236 DLKIITPKREIHPRVYQLNEGQTLFF-GGLAR---------------------------------LDYIKGGRRSFVCYM  281 (369)
T ss_dssp             THHHHSCSSCCCCEEEEECTTEEEEE-TTTEE---------------------------------EEEEESSSEEEEEEE
T ss_pred             HHHHHhcccccCceEEEEcCCceEEE-CCEEE---------------------------------EEEccCCCceEEEEe
Confidence             0000000136788888876322111 00000                                 011333468999999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCH
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLV  225 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nI  225 (890)
                      ||+|..      ++.........+.+..|..+...++++..++
T Consensus       282 ~k~d~~------~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~  318 (369)
T 3ec1_A          282 ANELTV------HRTKLEKADSLYANQLGELLSPPSKRYAAEF  318 (369)
T ss_dssp             CTTSCE------EEEEGGGHHHHHHHHBTTTBCSSCGGGTTTC
T ss_pred             cCCccc------ccccHHHHHHHHHHhcCCccCCCCchhhhhc
Confidence            999986      3444455566777888888777777664444

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.03  E-value=5.4e-06  Score=81.98  Aligned_cols=116  Identities=14%  Similarity=0.095  Sum_probs=75.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+.+|...+..+...  .+..    .-++++|+|.+.+.++ +.+..|+..+....                    
T Consensus        61 ~l~i~Dt~G~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~--------------------  113 (181)
T 1fzq_A           61 KLNVWDIGGQRKIRPYWRS--YFEN----TDILIYVIDSADRKRF-EETGQELTELLEEE--------------------  113 (181)
T ss_dssp             EEEEEECSSCGGGHHHHHH--HHTT----CSEEEEEEETTCGGGH-HHHHHHHHHHTTCG--------------------
T ss_pred             EEEEEECCCCHHHHHHHHH--HhCC----CCEEEEEEECcCHHHH-HHHHHHHHHHHhCh--------------------
Confidence            4589999998666554333  1221    2378999999999987 66666654321100                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~  550 (890)
                                                     ...++|++||+||+|+....+.   +.+.+.+. ..+...+...+.||+
T Consensus       114 -------------------------------~~~~~piilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa  159 (181)
T 1fzq_A          114 -------------------------------KLSCVPVLIFANKQDLLTAAPA---SEIAEGLNLHTIRDRVWQIQSCSA  159 (181)
T ss_dssp             -------------------------------GGTTCCEEEEEECTTSTTCCCH---HHHHHHTTGGGCCSSCEEEEECCT
T ss_pred             -------------------------------hhcCCCEEEEEECcCcccCCCH---HHHHHHhCchhccCCceEEEEccC
Confidence                                           0124899999999999754332   22222221 012234667899999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      +.+.|++.++.+|...+.
T Consensus       160 ~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          160 LTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             TTCTTHHHHHHHHHHTC-
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999988764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.99  E-value=3.8e-05  Score=87.13  Aligned_cols=154  Identities=12%  Similarity=0.078  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCCCCCCCc---cc-----eeEEEEEEeccccceEEEEEEcCCCcc----hhhHHhhhh
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKNDTPKPTL---AL-----EYIYARKSGKTVMKDICHLWELGSGTS----RLEVASLFS  104 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~~~kpti---gv-----dY~f~~~~g~~~~k~~l~IwDlpG~~~----~~~Li~~~r  104 (890)
                      .++|+|.+|||||||+|.++|-.....-.+   +.     .|.+.     ......+.+||++|...    ...++..+ 
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-----~~~~~~ltv~D~~g~~~~~~~~~~~L~~~-  144 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-----HPNIPNVVFWDLPGIGSTNFPPDTYLEKM-  144 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-----CSSCTTEEEEECCCGGGSSCCHHHHHHHT-
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-----ccccCCeeehHhhcccchHHHHHHHHHHc-
Confidence            699999999999999999998311110000   00     11111     11111589999998532    23333332 


Q ss_pred             ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeec
Q psy11649        105 SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGK  184 (890)
Q Consensus       105 ~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK  184 (890)
                        .+.  +.+.+++ ++......-.-.+..++.                                   ..+.|+++|.||
T Consensus       145 --~L~--~~~~~~~-lS~G~~~kqrv~la~aL~-----------------------------------~~~~p~~lV~tk  184 (413)
T 1tq4_A          145 --KFY--EYDFFII-ISATRFKKNDIDIAKAIS-----------------------------------MMKKEFYFVRTK  184 (413)
T ss_dssp             --TGG--GCSEEEE-EESSCCCHHHHHHHHHHH-----------------------------------HTTCEEEEEECC
T ss_pred             --CCC--ccCCeEE-eCCCCccHHHHHHHHHHH-----------------------------------hcCCCeEEEEec
Confidence              111  2344554 777632221012222221                                   125899999999


Q ss_pred             ccCC------CCCCcchhhhhHHHHHHHHH----HcC---CeEEEEec--cCCCCHHHHHHHHHHHH
Q psy11649        185 YDLF------ENLEPNKKRIAVQCLRYLAH----VNG---ASLLFHSS--LDPGLVKRTRDILNHYA  236 (890)
Q Consensus       185 ~Dl~------~d~d~e~r~~i~~~lr~la~----~~G---a~l~etSA--K~~~nId~Lk~~I~~~l  236 (890)
                      .|+.      ..+|+..+..+.+.+++++.    ..|   ..++.+|+  .++.|++++.+.|...+
T Consensus       185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence            9974      13455566666677777762    333   35788899  67778999999998776

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.99  E-value=2.2e-06  Score=95.80  Aligned_cols=140  Identities=11%  Similarity=0.050  Sum_probs=78.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC-----C----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh--
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN-----D----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF--  103 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~-----~----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~--  103 (890)
                      ..+|+++|.+|||||||+|+|++..     .    ...|+++.+.    .......  .+.++||||......+....  
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~----~~~~~~~--~~~liDtPG~~~~~~~~~~l~~  233 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL----IDIPLDE--ESSLYDTPGIINHHQMAHYVGK  233 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE----EEEESSS--SCEEEECCCBCCTTSGGGGSCH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce----EEEEecC--CeEEEeCCCcCcHHHHHHHhhH
Confidence            3579999999999999999999841     0    1223333331    1111111  38999999975433222111  


Q ss_pred             --hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEE
Q psy11649        104 --SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILI  181 (890)
Q Consensus       104 --r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVV  181 (890)
                        ....+.....+.+++++|....--+ ..+..                                 ...+...++|+++|
T Consensus       234 ~~l~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~---------------------------------~d~l~~~~~~~~~v  279 (368)
T 3h2y_A          234 QSLKLITPTKEIKPMVFQLNEEQTLFF-SGLAR---------------------------------FDYVSGGRRAFTCH  279 (368)
T ss_dssp             HHHHHHSCSSCCCCEEEEECTTEEEEE-TTTEE---------------------------------EEEEESSSEEEEEE
T ss_pred             HHHHHhccccccCceEEEEcCCCEEEE-cceEE---------------------------------EEEecCCCceEEEE
Confidence              0000000135677777765221110 00000                                 01133447899999


Q ss_pred             eecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        182 GGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       182 gNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      .||+|..      ++.........+.+..|..+...+++
T Consensus       280 ~nk~d~~------~~~~~~~~~~~~~~~~g~~l~p~~~~  312 (368)
T 3h2y_A          280 FSNRLTI------HRTKLEKADELYKNHAGDLLSPPTPE  312 (368)
T ss_dssp             ECTTSCE------EEEEHHHHHHHHHHHBTTTBCSSCHH
T ss_pred             ecCcccc------ccccHHHHHHHHHHHhCCccCCCchh
Confidence            9999986      44455666777788888876666654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.97  E-value=1.7e-05  Score=79.38  Aligned_cols=90  Identities=21%  Similarity=0.197  Sum_probs=68.6

Q ss_pred             eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649        422 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL  501 (890)
Q Consensus       422 ~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l  501 (890)
                      -++++|+|++.+.++ +.++.|...++....                                                 
T Consensus        82 ~~~i~v~dv~~~~s~-~~~~~~~~~l~~~~~-------------------------------------------------  111 (192)
T 2cjw_A           82 DAYLIVYSITDRASF-EKASELRIQLRRARQ-------------------------------------------------  111 (192)
T ss_dssp             SEEEEEEETTCHHHH-HHHHHHHHHHHHHTT-------------------------------------------------
T ss_pred             CEEEEEEECCCHHHH-HHHHHHHHHHHHhhC-------------------------------------------------
Confidence            378999999999988 788888876654211                                                 


Q ss_pred             cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                        .-++|+|+|++|+|+..+-.     ......+.+|..+|+..|.||+|.+.|++.++..|...+.
T Consensus       112 --~~~~piilV~NK~Dl~~~r~-----v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          112 --TEDIPIILVGNKSDLVRXRE-----VSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             --TSCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             --CCCCeEEEEEechhhhcccc-----ccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence              01479999999999863211     1122345678889999999999999999999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.93  E-value=3.4e-05  Score=83.64  Aligned_cols=106  Identities=9%  Similarity=0.087  Sum_probs=76.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..||++  +..+..|.+.  .+.  +.  -.+|+|+|.+.|....+.+++|+..++.   .                  
T Consensus        64 ~~~iwD~--qer~~~l~~~--~~~--~a--d~vilV~D~~~~~~s~~~l~~~l~~~~~---~------------------  114 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKP--HVA--NV--DQVILVVTVKMPETSTYIIDKFLVLAEK---N------------------  114 (301)
T ss_dssp             SEEEEEE--CCCSCEETTT--TEE--SC--CEEEEEECSSTTCCCHHHHHHHHHHHHH---T------------------
T ss_pred             eEEEEEE--ccccceeecc--ccc--cC--CEEEEEEeCCCCCCCHHHHHHHHHHHHH---C------------------
Confidence            4689999  5555655554  222  22  2799999999997433889999875532   0                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEec
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHS  549 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS  549 (890)
                                                        ++|+|||+||+|+..   +...    ..+..++..|+  +..|.||
T Consensus       115 ----------------------------------~~piilv~NK~DL~~---~~~v----~~~~~~~~~~~~~~~~~~~S  153 (301)
T 1u0l_A          115 ----------------------------------ELETVMVINKMDLYD---EDDL----RKVRELEEIYSGLYPIVKTS  153 (301)
T ss_dssp             ----------------------------------TCEEEEEECCGGGCC---HHHH----HHHHHHHHHHTTTSCEEECC
T ss_pred             ----------------------------------CCCEEEEEeHHHcCC---chhH----HHHHHHHHHHhhhCcEEEEE
Confidence                                              378999999999963   2221    33556666777  8899999


Q ss_pred             cCChhhHHHHHHHHhhhh
Q psy11649        550 SLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       550 ~K~~~n~~~l~kyi~hr~  567 (890)
                      +|.+.|++.++.++...+
T Consensus       154 Aktg~gv~~lf~~l~gei  171 (301)
T 1u0l_A          154 AKTGMGIEELKEYLKGKI  171 (301)
T ss_dssp             TTTCTTHHHHHHHHSSSE
T ss_pred             CCCCcCHHHHHHHhcCCe
Confidence            999999999999886543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.93  E-value=1.5e-05  Score=89.05  Aligned_cols=101  Identities=19%  Similarity=0.255  Sum_probs=71.7

Q ss_pred             CCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccc
Q psy11649         92 SGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLI  171 (890)
Q Consensus        92 G~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li  171 (890)
                      ..++|.+++..+    ++  +++++++|+|++++.      ..|...+.+...                           
T Consensus        55 ~~e~f~~~l~~i----~~--~~~~il~VvD~~d~~------~~~~~~l~~~~~---------------------------   95 (368)
T 3h2y_A           55 TDDDFLRILNGI----GK--SDALVVKIVDIFDFN------GSWLPGLHRFVG---------------------------   95 (368)
T ss_dssp             -CHHHHHHHHHH----HH--SCCEEEEEEETTSHH------HHCCTTHHHHSS---------------------------
T ss_pred             CHHHHHHHHHHH----hc--cCcEEEEEEECCCCc------ccHHHHHHHHhC---------------------------
Confidence            346788888777    22  377999999999853      234444433211                           


Q ss_pred             cCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        172 RTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       172 ~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         +.|+++|+||+|+....  .......+.++.++...|.   .++++||+++.|++++++.|....
T Consensus        96 ---~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A           96 ---NNKVLLVGNKADLIPKS--VKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             ---SSCEEEEEECGGGSCTT--SCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ---CCcEEEEEEChhcCCcc--cCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence               47999999999996321  1223344556667788887   799999999999999999997764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.91  E-value=1e-05  Score=78.50  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=43.4

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++|++||+||+|+... +.+......+..+.++..+|  +..|.||++.+.|++.++..|...+-
T Consensus       107 ~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          107 NVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE  170 (178)
T ss_dssp             SCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence            4789999999999753 22221111122334555566  68899999999999999999987654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.91  E-value=1.2e-05  Score=81.42  Aligned_cols=114  Identities=17%  Similarity=0.043  Sum_probs=73.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCC-CchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS-~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      -..+|+..|...+..++..  .+.......-.+|+|+|.+ .+.++ +.+..|+..+..+...                 
T Consensus        56 ~~~l~Dt~G~~~~~~~~~~--~~~~~~~~~~~~i~v~D~~~~~~~~-~~~~~~~~~~~~~~~~-----------------  115 (218)
T 1nrj_B           56 GVTLVDFPGHVKLRYKLSD--YLKTRAKFVKGLIFMVDSTVDPKKL-TTTAEFLVDILSITES-----------------  115 (218)
T ss_dssp             SCEEEECCCCGGGTHHHHH--HHHHHGGGEEEEEEEEETTSCTTCC-HHHHHHHHHHHHHHHH-----------------
T ss_pred             eEEEEECCCcHHHHHHHHH--HHHhccccCCEEEEEEECCCChHHH-HHHHHHHHHHHhcccc-----------------
Confidence            4689999999776555443  1221111124689999999 77776 6677776555443321                 


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCC-hhHHHHHHHHHHHHHHHcCCceeEec
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLE-PNKKRIAVQCLRYLAHVNGASLLFHS  549 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~-~E~~d~Iq~~lR~fcl~yGAsL~ftS  549 (890)
                                                     ..+.++|++|||||+|+..... ++..+.++..++.+|..+|+.++.+|
T Consensus       116 -------------------------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~S  164 (218)
T 1nrj_B          116 -------------------------------SCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVE  164 (218)
T ss_dssp             -------------------------------HSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             -------------------------------cccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccc
Confidence                                           0012589999999999986655 45567888899999999999999999


Q ss_pred             cCChhhH
Q psy11649        550 SLDPGLV  556 (890)
Q Consensus       550 ~K~~~n~  556 (890)
                      +|++.|-
T Consensus       165 a~~~~~~  171 (218)
T 1nrj_B          165 RKINEED  171 (218)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            9998874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.90  E-value=2.1e-05  Score=79.32  Aligned_cols=119  Identities=13%  Similarity=0.036  Sum_probs=72.5

Q ss_pred             eeEEEEeCCCccccc-ccccccccccccccceEEEEEEeCCCchh-HHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649        392 ICHLWELGSGTSRLE-VASLFSSFSLTAQSGFTLVLMLDLSRLNS-LWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  469 (890)
Q Consensus       392 i~~vW~L~G~~~~~~-Ll~~~~al~~~~~~~~~viivlDlS~Pw~-l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~  469 (890)
                      -+.||+..|...+.. +...  -+.    ..-++|+|+|.+.+.. +.+.++.|...++....                 
T Consensus        55 ~~~i~Dt~G~~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----------------  111 (214)
T 2fh5_B           55 SLTLIDLPGHESLRFQLLDR--FKS----SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA-----------------  111 (214)
T ss_dssp             EEEEEECCCCHHHHHHHHHH--HGG----GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT-----------------
T ss_pred             EEEEEECCCChhHHHHHHHH--HHh----hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhh-----------------
Confidence            368999999865554 3332  111    1237899999998643 43444445444433110                 


Q ss_pred             ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-HHHHHHHHHHH------------
Q psy11649        470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-KKRIAVQCLRY------------  536 (890)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~~d~Iq~~lR~------------  536 (890)
                                                       ...++|+||||||+|+....+.+ ..+.+++.+..            
T Consensus       112 ---------------------------------~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~  158 (214)
T 2fh5_B          112 ---------------------------------LKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTL  158 (214)
T ss_dssp             ---------------------------------STTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------
T ss_pred             ---------------------------------cccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccc
Confidence                                             01248999999999998544322 23455554442            


Q ss_pred             ----------------HHHHc---CCceeEeccCCh------hhHHHHHHHHhhh
Q psy11649        537 ----------------LAHVN---GASLLFHSSLDP------GLVKRTRDILNHY  566 (890)
Q Consensus       537 ----------------fcl~y---GAsL~ftS~K~~------~n~~~l~kyi~hr  566 (890)
                                      ||...   ++..|-||+|.+      .|++.++.+|...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                            12212   666788999999      9999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.88  E-value=1.6e-05  Score=81.58  Aligned_cols=62  Identities=8%  Similarity=-0.118  Sum_probs=48.4

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++|+|||+||+|+...-  +........++.++..+|  +..|.||+|.+.|++.++..|...+..
T Consensus       142 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          142 NKSIVIGFNKIDKCNMD--SLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCcccCCch--hhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence            47999999999997421  111233456777888898  899999999999999999999887754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.87  E-value=2.1e-05  Score=87.83  Aligned_cols=118  Identities=18%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCC----------chhHHHHHHHHHHHHHHHHHhhhhHHhhc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVREKR  461 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~----------Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~  461 (890)
                      .++|+.||+.++..+-..       .+ ...++|||+|+|.          +..+-++++.|..++    ..        
T Consensus       203 l~i~Dt~Gq~~~r~~w~~-------~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~----~~--------  263 (362)
T 1zcb_A          203 FKMVDVGGQRSERKRWFE-------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV----NN--------  263 (362)
T ss_dssp             EEEEEECC-------CTT-------SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHH----TC--------
T ss_pred             EEEEeccchhhhhhhHHH-------HhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHh----cc--------
Confidence            589999999776654433       22 2358999999999          777754444332222    11        


Q ss_pred             ccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------CC-----
Q psy11649        462 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------LE-----  523 (890)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~~-----  523 (890)
                                        +.+                      .++|+|||++|+|++.+             |+     
T Consensus       264 ------------------~~~----------------------~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~  303 (362)
T 1zcb_A          264 ------------------RVF----------------------SNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHC  303 (362)
T ss_dssp             ------------------GGG----------------------TTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTC
T ss_pred             ------------------hhh----------------------CCCCEEEEEEChhhhhhhccccchhhcCccccCCCCC
Confidence                              000                      14899999999999731             11     


Q ss_pred             -hhHHHHHHHHHHHHHH---HcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        524 -PNKKRIAVQCLRYLAH---VNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       524 -~E~~d~Iq~~lR~fcl---~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                       ++-.+++......++.   ..+...++||++...|++.++..+...+..
T Consensus       304 ~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          304 LRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence             1111222222111212   346778899999999999999988876653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.85  E-value=7.3e-05  Score=83.14  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHH
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFL   56 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~   56 (890)
                      ...+.||+++|.++|||||++.++-
T Consensus         6 ~~~~~k~lllG~~~sGKsT~~kq~~   30 (354)
T 2xtz_A            6 GIHIRKLLLLGAGESGKSTIFKQIK   30 (354)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceeEEEECCCCCcHHHHHHHHH
Confidence            4567899999999999999999974

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.84  E-value=9.2e-05  Score=86.01  Aligned_cols=23  Identities=17%  Similarity=0.488  Sum_probs=20.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHH
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFL   56 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~   56 (890)
                      ....|+|+|.+||||||++++|.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999998

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.80  E-value=4.3e-05  Score=75.48  Aligned_cols=59  Identities=19%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             CCcEEEEEeccccccCCChhHHH-HHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKR-IAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d-~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|++||+||+|+..   ++... .+.+..+.++...++..|.+|++.+.|++.++.+|...+
T Consensus       134 ~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          134 GIPVIVIATKADKIP---KGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCCEEEEEECGGGSC---GGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCC---hHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            478999999999974   22232 233333336666789999999999999999999987654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=97.80  E-value=3.2e-05  Score=86.04  Aligned_cols=124  Identities=16%  Similarity=0.187  Sum_probs=75.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhH------HHHHHHHHHHHHHHHHhhhhHHhhccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSL------WTEAETFLAKFRAIFESNESVREKRGSFE  465 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l------~~sL~~W~~~~r~~i~~~~~~~~~~~~~~  465 (890)
                      ..++|+.||+..+..+-..  -.  .+  ..+||||+|+|.+.+.      .++++.|...++.....            
T Consensus       194 ~l~iwDt~GQe~~r~~w~~--yf--~~--a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~------------  255 (353)
T 1cip_A          194 HFKMFDVGGQRSERKKWIH--CF--EG--VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN------------  255 (353)
T ss_dssp             EEEEEEECCSGGGGGGGGG--GC--TT--CSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC------------
T ss_pred             eEEEEeCCCchhhhHHHHH--HH--hc--CCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC------------
Confidence            3589999999777655443  11  12  3489999999995320      02334444333332221            


Q ss_pred             ccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------C----C-hhHH
Q psy11649        466 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------L----E-PNKK  527 (890)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~----~-~E~~  527 (890)
                                    ..+                      -++|+||||+|+|++.+             |    + +|-.
T Consensus       256 --------------~~~----------------------~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~  299 (353)
T 1cip_A          256 --------------KWF----------------------TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAA  299 (353)
T ss_dssp             --------------GGG----------------------TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHH
T ss_pred             --------------ccc----------------------cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHH
Confidence                          000                      14899999999999721             1    1 1112


Q ss_pred             HHHHHHHHHHH---HHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        528 RIAVQCLRYLA---HVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       528 d~Iq~~lR~fc---l~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      +++......+.   ...+...++||++...|++.++..+...+..
T Consensus       300 ~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          300 AYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            23322211111   1357788999999999999999998877764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.78  E-value=4e-05  Score=85.54  Aligned_cols=100  Identities=19%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             CCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccc
Q psy11649         92 SGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGL  170 (890)
Q Consensus        92 G~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~l  170 (890)
                      .+++|.+++..+ +       +++++++|+|++++.+-      |...+.+.+                           
T Consensus        57 ~~e~f~~~L~~~~~-------~~~lil~VvD~~d~~~s------~~~~l~~~l---------------------------   96 (369)
T 3ec1_A           57 DDDDFLSMLHRIGE-------SKALVVNIVDIFDFNGS------FIPGLPRFA---------------------------   96 (369)
T ss_dssp             --CHHHHHHHHHHH-------HCCEEEEEEETTCSGGG------CCSSHHHHC---------------------------
T ss_pred             CHHHHHHHHHHhhc-------cCcEEEEEEECCCCCCc------hhhHHHHHh---------------------------
Confidence            467888888777 3       38899999999997652      222222221                           


Q ss_pred             ccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC---eEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        171 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       171 i~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga---~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .+.|+++|+||+|+....  .......+.++.++...|.   .++++||+++.|++++.+.|....
T Consensus        97 ---~~~piilV~NK~DLl~~~--~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A           97 ---ADNPILLVGNKADLLPRS--VKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             ---TTSCEEEEEECGGGSCTT--CCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             ---CCCCEEEEEEChhcCCCc--cCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence               147999999999997321  1123345556666777887   689999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.78  E-value=8.9e-05  Score=74.18  Aligned_cols=113  Identities=18%  Similarity=0.264  Sum_probs=82.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+..|...+..+...  ...  .  ...+++|+|++.+.++ +.+..|+..++.+..                    
T Consensus        56 ~~i~Dt~g~~~~~~~~~~--~~~--~--~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  108 (199)
T 2f9l_A           56 AQIWDTAGQERYRRITSA--YYR--G--AVGALLVYDIAKHLTY-ENVERWLKELRDHAD--------------------  108 (199)
T ss_dssp             EEEEECSSGGGTTCCCHH--HHT--T--CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCchhhhhhhHH--HHh--c--CCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC--------------------
Confidence            478999998665554444  122  1  2368999999999986 777788765543100                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+++|++|+|+....+..     ...+|.+|...+..++.||++.
T Consensus       109 --------------------------------~~~~i~~v~nK~Dl~~~~~~~-----~~~a~~l~~~~~~~~~d~Sal~  151 (199)
T 2f9l_A          109 --------------------------------SNIVIMLVGNKSDLRHLRAVP-----TDEARAFAEKNNLSFIETSALD  151 (199)
T ss_dssp             --------------------------------TTCEEEEEEECTTCGGGCCSC-----HHHHHHHHHHTTCEEEECCTTT
T ss_pred             --------------------------------CCCeEEEEEECcccccccCcC-----HHHHHHHHHHcCCeEEEEeCCC
Confidence                                            136899999999996322111     1237889999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.+++.|...++.
T Consensus       152 ~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          152 STNVEEAFKNILTEIYR  168 (199)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999988875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.77  E-value=3e-05  Score=75.23  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|+|++|+|+...-.-      ......+|..+|+..+.||+|.+.|++.++..|...+
T Consensus       108 ~~p~ilv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          108 GANLLLALNKMDLAKSLGI------EIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             TCCEEEEEECHHHHHHTTC------CCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             CCCEEEEEEchHhccccCh------hhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4789999999998632110      0124567778899999999999999999999987654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.75  E-value=2.6e-05  Score=74.25  Aligned_cols=51  Identities=22%  Similarity=0.087  Sum_probs=41.6

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccCChhhHHHHHHHHhhhh
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      +|++||+||+|+... +        ..++.++ .+|+ ..+.+|+|.+.|++.++.+|...+
T Consensus       109 ~p~ilv~nK~Dl~~~-~--------~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          109 KPVILVATKVDDPKH-E--------LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CCEEEEEECCCSGGG-G--------GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CCEEEEEECcccccc-h--------HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            789999999999754 1        2344566 7888 799999999999999999987653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.74  E-value=3.2e-05  Score=75.84  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=45.8

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCc-------eeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGAS-------LLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAs-------L~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++|++||+||+|+...-        ...++.+|..+|+.       .+.||++.+.|++.++.+|...+..
T Consensus       122 ~~piilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          122 DIPTIVAVNKLDKIKNV--------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  184 (190)
T ss_dssp             TCCEEEEEECGGGCSCH--------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCceEEEeehHhccCcH--------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence            58999999999997432        44566778888875       6999999999999999999887643

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.73  E-value=2.3e-05  Score=86.01  Aligned_cols=117  Identities=15%  Similarity=0.093  Sum_probs=73.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..||+..|+..+..+...  .+.    ..-++|+|+|.+.+.++ +.+..|+..+..+..                   
T Consensus       210 ~l~i~Dt~G~~~~~~~~~~--~~~----~ad~vilV~D~~~~~s~-~~~~~~~~~~~~~~~-------------------  263 (329)
T 3o47_A          210 SFTVWDVGGQDKIRPLWRH--YFQ----NTQGLIFVVDSNDRERV-NEAREELMRMLAEDE-------------------  263 (329)
T ss_dssp             EEEEEECC-----CCSHHH--HHT----TEEEEEEEEETTCSSSH-HHHHHHHHHHHTCGG-------------------
T ss_pred             EEEEEECCCCHhHHHHHHH--Hhc----cCCEEEEEEECCchHHH-HHHHHHHHHHHhhhc-------------------
Confidence            3589999998766655443  222    13379999999999987 555555433221000                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~  550 (890)
                                                      ..++|+|||+||+|+....+.+   .+.+.+ ..++...+...|.+|+
T Consensus       264 --------------------------------~~~~piilV~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~vSA  308 (329)
T 3o47_A          264 --------------------------------LRDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRHRNWYIQATCA  308 (329)
T ss_dssp             --------------------------------GTTCEEEEEEECTTSTTCCCHH---HHHHHHTCTTCCSSCEEEEECBT
T ss_pred             --------------------------------cCCCeEEEEEECccCCcccCHH---HHHHHhchhhhhcCCCEEEEEEC
Confidence                                            0148999999999997543322   222222 2222334667899999


Q ss_pred             CChhhHHHHHHHHhhhhcC
Q psy11649        551 LDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~fg  569 (890)
                      |.+.|++.++..|...+..
T Consensus       309 k~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          309 TSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             TTTBTHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHHHh
Confidence            9999999999999887653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.71  E-value=0.00011  Score=72.04  Aligned_cols=60  Identities=13%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++|+|||+||+|+.   +++........++.++..+| +..+.+|++.+.|++.++..|...+.
T Consensus       133 ~~p~i~v~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          133 NIPFTIVLTKMDKV---KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             TCCEEEEEECGGGS---CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCCEEEEEEChhcC---ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            47899999999997   44556667777888888866 68899999999999999999987764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=97.69  E-value=4.1e-05  Score=89.33  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=80.0

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+++|...+..+...  .+..    ..++|+|+|.+.+    +.++.|+..++++..                   
T Consensus        99 ~~~i~Dt~G~e~~~~~~~~--~l~~----~d~ii~V~D~s~~----~~~~~~~~~l~~~~~-------------------  149 (535)
T 3dpu_A           99 LFHFWDFGGQEIMHASHQF--FMTR----SSVYMLLLDSRTD----SNKHYWLRHIEKYGG-------------------  149 (535)
T ss_dssp             EEEEECCCSCCTTTTTCHH--HHHS----SEEEEEEECGGGG----GGHHHHHHHHHHHSS-------------------
T ss_pred             EEEEEECCcHHHHHHHHHH--HccC----CcEEEEEEeCCCc----hhHHHHHHHHHHhCC-------------------
Confidence            4699999998777666555  2222    3478999999986    566788877765210                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        .+|+|||+||+|+...-+-.     .+.++.++..+|+..|.+|++
T Consensus       150 ----------------------------------~~pvilV~NK~Dl~~~~~v~-----~~~~~~~~~~~~~~~~~vSA~  190 (535)
T 3dpu_A          150 ----------------------------------KSPVIVVMNKIDENPSYNIE-----QKKINERFPAIENRFHRISCK  190 (535)
T ss_dssp             ----------------------------------SCCEEEEECCTTTCTTCCCC-----HHHHHHHCGGGTTCEEECCC-
T ss_pred             ----------------------------------CCCEEEEEECCCcccccccC-----HHHHHHHHHhcCCceEEEecC
Confidence                                              26899999999997432211     245677888899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcCCCC
Q psy11649        552 DPGLVKRTRDILNHYAFSSHL  572 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg~~~  572 (890)
                      .+.|++.|+..|...+...+.
T Consensus       191 ~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          191 NGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             ----CTTHHHHHHHHHTCTTS
T ss_pred             cccCHHHHHHHHHHHHhcccc
Confidence            999999999999998876543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=97.66  E-value=5e-05  Score=83.60  Aligned_cols=123  Identities=15%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCC-------CchhHHHHHHHHHHHHHHHHHhhhhHHhhcccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLS-------RLNSLWTEAETFLAKFRAIFESNESVREKRGSF  464 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS-------~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~  464 (890)
                      .+||+.||+..++.+-..       .+ ...++|+|+|+|       ...+. ++++.|...++..+..           
T Consensus       169 l~iwDtgGQe~~R~~w~~-------yf~~~~~iIfV~dls~ydq~l~d~~~~-nr~~es~~~~~~i~~~-----------  229 (327)
T 3ohm_A          169 FRMVDVGGQRSERRKWIH-------CFENVTSIMFLVALSEYDQVLVESDNE-NRMEESKALFRTIITY-----------  229 (327)
T ss_dssp             EEEEEECCSHHHHTTGGG-------GCSSCSEEEEEEEGGGGGCBCSSCTTS-BHHHHHHHHHHHHHTS-----------
T ss_pred             eEEEEcCCchhHHHHHHH-------HhCCCCEEEEEEECccccccccccccH-hHHHHHHHHHHHHhhh-----------
Confidence            589999999776654332       22 234899999988       33222 4555555555543332           


Q ss_pred             cccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------CC------hh
Q psy11649        465 EHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------LE------PN  525 (890)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~~------~E  525 (890)
                                     ..+                      -.+|+|||++|+|++.+             +.      ++
T Consensus       230 ---------------~~~----------------------~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~  272 (327)
T 3ohm_A          230 ---------------PWF----------------------QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQA  272 (327)
T ss_dssp             ---------------GGG----------------------TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHH
T ss_pred             ---------------hcc----------------------CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHH
Confidence                           000                      13899999999999731             11      11


Q ss_pred             HHHHHHHHHHHH--HHHcCCceeEeccCChhhHHHHHHHHhhhhcCCC
Q psy11649        526 KKRIAVQCLRYL--AHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       526 ~~d~Iq~~lR~f--cl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~  571 (890)
                      -.+||.......  +...+.-.+|||+|+..|++.++..+...+..-.
T Consensus       273 a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          273 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            223443333222  2334556789999999999999999988776543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.62  E-value=0.00024  Score=80.77  Aligned_cols=44  Identities=18%  Similarity=0.060  Sum_probs=28.1

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccC
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  221 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~  221 (890)
                      ++|+|+|.||+|.+.   +++.......++.-....|++++++|.-+
T Consensus       176 ~~~vI~Vi~KtD~Lt---~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          176 KVNIIPIIAKADAIS---KSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             CSEEEEEESCGGGSC---HHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             CCCEEEEEcchhccc---hHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            689999999999863   23333344445543345789999988643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=97.61  E-value=0.00014  Score=82.19  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             eEEEEeCCCcccccccccccccccccc-cceEEEEEEeCCC----------chhHHHHHHHHHHHHHHHHHhhhhHHhhc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSR----------LNSLWTEAETFLAKFRAIFESNESVREKR  461 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~----------Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~  461 (890)
                      .+||+.||+..++.+-..       .+ ...++|||+|+|.          ..++ +....|...+..   .        
T Consensus       219 l~iwDtaGQe~~r~~w~~-------yf~~a~~iIfV~dis~ydq~l~ed~~~ns~-~e~~~~~~~i~~---~--------  279 (402)
T 1azs_C          219 FHMFDVGGQRDERRKWIQ-------CFNDVTAIIFVVASSSYNMVIREDNQTNRL-QEALNLFKSIWN---N--------  279 (402)
T ss_dssp             EEEEEECCSGGGGGGGGG-------GTTTCCEEEEEEETTGGGCBCTTTSCSBHH-HHHHHHHHHHHT---C--------
T ss_pred             ceecccchhhhhhhhhHh-------hccCCCEEEEEEECcccccccccccccchH-HHHHHHHHHHHh---c--------
Confidence            589999999777655443       22 2358999999999          7776 444455433221   0        


Q ss_pred             ccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-----C-C-----hh-----
Q psy11649        462 GSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-----L-E-----PN-----  525 (890)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-----~-~-----~E-----  525 (890)
                                        ..+                      -.+||||||+|+|++..     . +     +|     
T Consensus       280 ------------------~~~----------------------~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~  319 (402)
T 1azs_C          280 ------------------RWL----------------------RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYT  319 (402)
T ss_dssp             ------------------TTC----------------------SSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCC
T ss_pred             ------------------ccC----------------------CCCeEEEEEEChhhhhhhhcccccchhhccccccccc
Confidence                              000                      13799999999998631     1 0     00     


Q ss_pred             -------------HHHHHHHHH-HHHHHHc--------CCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        526 -------------KKRIAVQCL-RYLAHVN--------GASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       526 -------------~~d~Iq~~l-R~fcl~y--------GAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                                   ..+..++.+ .+|+..+        +.-.++||+++..|++.++..+...+.
T Consensus       320 ~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~  384 (402)
T 1azs_C          320 TPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ  384 (402)
T ss_dssp             CCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence                         112222222 3344442        445578999999999999998877665

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.60  E-value=5.5e-05  Score=83.30  Aligned_cols=118  Identities=13%  Similarity=0.044  Sum_probs=78.6

Q ss_pred             eEEEEeCCCccccc-cc--ccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccc
Q psy11649        393 CHLWELGSGTSRLE-VA--SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  469 (890)
Q Consensus       393 ~~vW~L~G~~~~~~-Ll--~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~  469 (890)
                      ++||+.+|+..+.. .+  ..  -..    ....+|+|+|.+.+  +.++++.|.+.++..-+.                
T Consensus        48 LqIWDTAGQErf~~~~l~~~~--yyr----~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~----------------  103 (331)
T 3r7w_B           48 LAVMELPGQLNYFEPSYDSER--LFK----SVGALVYVIDSQDE--YINAITNLAMIIEYAYKV----------------  103 (331)
T ss_dssp             EEEEECCSCSSSCCCSHHHHH--HHT----TCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHH----------------
T ss_pred             EEEEECCCchhccchhhhhhh--hcc----CCCEEEEEEECCch--HHHHHHHHHHHHHHHhhc----------------
Confidence            69999999966542 11  11  111    23379999999998  446666665544331110                


Q ss_pred             ccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-h-HHHHHHHHHHHHHHH----cCC
Q psy11649        470 ADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-N-KKRIAVQCLRYLAHV----NGA  543 (890)
Q Consensus       470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E-~~d~Iq~~lR~fcl~----yGA  543 (890)
                                  .                      -++|++|||+|+|+..+-+. + +++.-++....+|..    +|+
T Consensus       104 ------------~----------------------~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i  149 (331)
T 3r7w_B          104 ------------N----------------------PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV  149 (331)
T ss_dssp             ------------C----------------------TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred             ------------C----------------------CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence                        0                      04899999999999742111 1 234445556678886    788


Q ss_pred             ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ..|=||+|+ .|+...+..|.+.+..
T Consensus       150 ~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          150 SFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence            888899998 5999999999998874

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.58  E-value=0.00035  Score=69.60  Aligned_cols=111  Identities=20%  Similarity=0.280  Sum_probs=79.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccc-eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSG-FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~-~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..+|+..|...+..+...       .... ..+++|+|.+.+.++ +.++.|+..+++...                   
T Consensus        80 ~~i~Dt~g~~~~~~~~~~-------~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------  132 (191)
T 1oix_A           80 AQIWDTAGLERYRAITSA-------YYRGAVGALLVYDIAKHLTY-ENVERWLKELRDHAD-------------------  132 (191)
T ss_dssp             EEEEEECSCCSSSCCCHH-------HHTTCCEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEEECCCCcchhhhhHH-------HhhcCCEEEEEEECcCHHHH-HHHHHHHHHHHHhcC-------------------
Confidence            368999987555443333       1221 268899999999876 778888765543100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       ...|+++|++|+|+-.....     -...+|.+|...+..++.||++
T Consensus       133 ---------------------------------~~~~i~~v~nK~Dl~~~~~~-----~~~~a~~l~~~~~~~~ld~Sal  174 (191)
T 1oix_A          133 ---------------------------------SNIVIMLVGNKSDLRHLRAV-----PTDEARAFAEKNGLSFIETSAL  174 (191)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGGGGCCS-----CHHHHHHHHHHTTCEEEECCTT
T ss_pred             ---------------------------------CCCcEEEEEECccccccccc-----CHHHHHHHHHHcCCEEEEEeCC
Confidence                                             02688999999998632111     1234788999999999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.+++.|...+|
T Consensus       175 d~~~v~~l~~~l~~~i~  191 (191)
T 1oix_A          175 DSTNVEAAFQTILTEIY  191 (191)
T ss_dssp             TCTTHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhC
Confidence            99999999999987764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.53  E-value=0.00026  Score=71.60  Aligned_cols=61  Identities=11%  Similarity=0.148  Sum_probs=43.3

Q ss_pred             CCcEEEEEeccccccCCChhHH----HHHHHHHHHHHH---HcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKK----RIAVQCLRYLAH---VNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~----d~Iq~~lR~fcl---~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++|+|||+||+|+..   .+..    +.+.+.+..+..   ..++..|.+|++.+.|++.++.+|...+-.
T Consensus       144 ~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          144 GKPIHSLLTKCDKLT---RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             CCCEEEEEECGGGSC---HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEeccccCC---hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            478999999999973   2332    222233332221   267889999999999999999999887743

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.51  E-value=0.00017  Score=74.65  Aligned_cols=110  Identities=7%  Similarity=-0.078  Sum_probs=62.4

Q ss_pred             cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      .+||.+++.++..|    |.  ++|++|+|+|.++.+++ + ...-+..+...+.+                     +  
T Consensus       109 ~GGQ~klRplWr~Y----y~--~TdglIfVVDSsD~~R~-e-ak~EL~eL~~mL~e---------------------e--  157 (227)
T 3l82_B          109 QGSRYSVIPQIQKV----CE--VVDGFIYVANAEAHKRH-E-WQDEFSHIMAMTDP---------------------A--  157 (227)
T ss_dssp             --------CCHHHH----HH--HCSEEEEEEECBTTCCC-C-HHHHHHHHHHHSCT---------------------T--
T ss_pred             cCcHHHHHHHHHHH----hc--CCCEEEEEeccccHhHH-H-HHHHHHHHHHHhcc---------------------h--
Confidence            34888999999999    22  59999999999998775 2 22222222221111                     0  


Q ss_pred             cccCCCCcEEEEeecc-cCCCCCCcchhhhhHHH--HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        170 LIRTFPVPLILIGGKY-DLFENLEPNKKRIAVQC--LRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       170 li~~l~IPiIVVgNK~-Dl~~d~d~e~r~~i~~~--lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       ....++|++|.+||. |+...++..+   +.+.  +..+  .....+..|||++|+|+.+-.++|...+
T Consensus       158 -~~L~gapLLVlANKqqDlp~Ams~~E---I~e~L~L~~l--~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          158 -FGSSGRPLLVLSCISQGDVKRMPCFY---LAHELHLNLL--NHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             -SSCSCSCEEEEEEESSTTSCBCCHHH---HHHHTTGGGG--CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             -hhhCCCeEEEEeCCCcCccCCCCHHH---HHHHcCCcCC--CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence             011378999999996 6643222111   1111  1111  1234689999999999999988887654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.49  E-value=0.00089  Score=71.53  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +++++|+|.+|+|||||+|.|++
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999999999998

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.47  E-value=0.00013  Score=71.51  Aligned_cols=59  Identities=15%  Similarity=0.092  Sum_probs=46.8

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~  570 (890)
                      ++|+|||+||+|+...-.      +...++.+|..+|+..+.||++.+.|++.++..|...+.+.
T Consensus       112 ~~piilv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          112 GANLLLALNKMDLAKSLG------IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             TCCEEEEEECHHHHHHTT------CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEhhhcccccc------chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            478999999999863211      11235667788899999999999999999999999887663

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.43  E-value=8e-05  Score=82.41  Aligned_cols=27  Identities=11%  Similarity=-0.054  Sum_probs=23.1

Q ss_pred             CceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        543 ASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       543 AsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      .--+|||+++..|++.++..+...++.
T Consensus       302 iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          302 VYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence            456899999999999999988877764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.42  E-value=0.00035  Score=75.76  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=65.9

Q ss_pred             EEEEEEeCCCch-hHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649        423 TLVLMLDLSRLN-SLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL  501 (890)
Q Consensus       423 ~viivlDlS~Pw-~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l  501 (890)
                      .+++|+|++.|. +. +.+++|+..++.                                                    
T Consensus        82 ~vliV~d~~~p~~s~-~~l~~~l~~~~~----------------------------------------------------  108 (302)
T 2yv5_A           82 RVIIVETLKMPEFNN-YLLDNMLVVYEY----------------------------------------------------  108 (302)
T ss_dssp             EEEEEECSTTTTCCH-HHHHHHHHHHHH----------------------------------------------------
T ss_pred             EEEEEEECCCCCCCH-HHHHHHHHHHHh----------------------------------------------------
Confidence            789999999995 66 778899876542                                                    


Q ss_pred             cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                         .++|+|||+||+|+..   ++..+.+ ..+..++...|...+++|++.+.|++.|+.++...+.+
T Consensus       109 ---~~~~~ilV~NK~DL~~---~~~v~~~-~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~  169 (302)
T 2yv5_A          109 ---FKVEPVIVFNKIDLLN---EEEKKEL-ERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICI  169 (302)
T ss_dssp             ---TTCEEEEEECCGGGCC---HHHHHHH-HHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEE
T ss_pred             ---CCCCEEEEEEcccCCC---ccccHHH-HHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEE
Confidence               1478899999999973   2221222 34456667789999999999999999999998755444

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.36  E-value=0.00023  Score=75.35  Aligned_cols=56  Identities=18%  Similarity=0.085  Sum_probs=45.1

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|||+||+|+...-      .+...+..++..+|.+.|.||++.+.|++.+++.|...+
T Consensus       110 ~~pvilv~NK~Dl~~~~------~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A          110 EKKVILAMTAIDEAKKT------GMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             TCCEEEEEECHHHHHHT------TCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcCCCCcc------chHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence            58999999999986321      111235677888899999999999999999999998865

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.33  E-value=0.00043  Score=74.86  Aligned_cols=110  Identities=7%  Similarity=-0.078  Sum_probs=68.6

Q ss_pred             cCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Q psy11649         90 LGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKG  169 (890)
Q Consensus        90 lpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~  169 (890)
                      .+||.+++.++..|    |.  ++|++|+|+|.++.+++ + ...-+.++...+.+    .                   
T Consensus       194 ~GGQ~~lRplWr~Y----y~--~tdglIfVVDSsDreRl-e-ak~EL~eL~~mL~e----~-------------------  242 (312)
T 3l2o_B          194 QGSRYSVIPQIQKV----CE--VVDGFIYVANAEAHKRH-E-WQDEFSHIMAMTDP----A-------------------  242 (312)
T ss_dssp             ---CCCCCHHHHHH----HH--HCSEEEECCBCBTTCCC-C-HHHHHHHHHHHHCH----H-------------------
T ss_pred             CCCHHHHHHHHHHH----hc--CCCEEEEEecCCcHhHH-H-HHHHHHHHHHHhcc----h-------------------
Confidence            56889999999999    22  59999999999999886 3 22222222222211    0                   


Q ss_pred             cccCCCCcEEEEeec-ccCCCCCCcchhhhhHHHH--HHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        170 LIRTFPVPLILIGGK-YDLFENLEPNKKRIAVQCL--RYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       170 li~~l~IPiIVVgNK-~Dl~~d~d~e~r~~i~~~l--r~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       ....++|++|.+|| .|+...++..+   +.+.+  ..+  .....+..|||.+|+|+.+-.++|...+
T Consensus       243 -~~l~~apLLVfANKkQDlp~Ams~~E---I~e~L~L~~l--~r~W~Iq~csA~tGeGL~EGldWL~~~l  306 (312)
T 3l2o_B          243 -FGSSGRPLLVLSCISQGDVKRMPCFY---LAHELHLNLL--NHPWLVQDTEAETLTGFLNGIEWILEEV  306 (312)
T ss_dssp             -HHCTTCCEEEEEEESSTTSCBCCHHH---HHHHTTGGGG--CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred             -hhcCCCeEEEEeCCcccccCCCCHHH---HHHHcCCccC--CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence             00126899999997 57743322111   11111  111  1234589999999999999999998775

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.25  E-value=0.00034  Score=74.85  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=43.9

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      |+|+|||++|+|+...-.      +...+..++..+|+..|.||++.+.|++.++..|...+
T Consensus       107 ~~p~ilv~NK~Dl~~~~~------~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          107 GIPVTIALNMIDVLDGQG------KKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             CSCEEEEEECHHHHHHTT------CCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             CCCEEEEEEChhhCCcCC------cHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            589999999999863211      11234566777899999999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.24  E-value=0.00088  Score=72.64  Aligned_cols=60  Identities=12%  Similarity=0.125  Sum_probs=47.4

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~fg~  570 (890)
                      ++|+|+|+||+|+..+     .+.+...+..++..+|  +..|.+|++.+.|++.|+..|...+-..
T Consensus       122 ~~pvilV~NK~Dl~~~-----~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          122 NKPVIVVINKIDKIGP-----AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             CCCEEEEEECGGGSSS-----GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             CCCEEEEEECccCCCC-----HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence            4789999999999731     1233445566777787  8899999999999999999999887543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.22  E-value=0.00011  Score=78.26  Aligned_cols=56  Identities=13%  Similarity=0.112  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      .+++++|.+|||||||+|+|++... ...++.|.....  .....  ...+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~--~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSL--ENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEEC--TTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEe--CCCEEEEECCCccc
Confidence            5999999999999999999998532 222222211100  00011  12589999999754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.20  E-value=0.00023  Score=76.50  Aligned_cols=55  Identities=27%  Similarity=0.305  Sum_probs=34.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      ..++|+++|.||||||||+|+|++...   ...|+++.+...    ...  ...+.+|||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~----~~~--~~~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW----VKV--GKELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC----EEE--TTTEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE----EEe--CCCEEEEECcCcC
Confidence            468999999999999999999998531   222333322110    011  1258999999974

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.20  E-value=0.00045  Score=74.30  Aligned_cols=99  Identities=15%  Similarity=0.019  Sum_probs=62.9

Q ss_pred             EEEcCCCcc--hhhHHhhhhccccccccCcEEEEEEeCCCcCchHH-HHHHHHHHHHHHHhhhhhhhhhccccccccccc
Q psy11649         87 LWELGSGTS--RLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWT-EAETFLAKFRAIFESNESVREKRGSFEHFRTAD  163 (890)
Q Consensus        87 IwDlpG~~~--~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~-~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~  163 (890)
                      |-..||+..  ++++.....       .+|+|+.|+|+.+|.+..+ .+..|+                           
T Consensus         3 i~w~PGhm~ka~~~~~~~l~-------~aDvVl~VvDAr~p~~~~~~~l~~~l---------------------------   48 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLK-------LIDIVYELVDARIPMSSRNPMIEDIL---------------------------   48 (282)
T ss_dssp             ------CTTHHHHHHHHHGG-------GCSEEEEEEETTSTTTTSCHHHHHHC---------------------------
T ss_pred             CcCCchHHHHHHHHHHHHHh-------hCCEEEEEEeCCCCCccCCHHHHHHH---------------------------
Confidence            445778642  233333332       4999999999999887621 233322                           


Q ss_pred             cccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        164 EHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       164 ~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                                .+.|+++|+||+|+..      ...... ...+....|.+++++||+++.|++++.+.+...+
T Consensus        49 ----------~~kp~ilVlNK~DL~~------~~~~~~-~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l  104 (282)
T 1puj_A           49 ----------KNKPRIMLLNKADKAD------AAVTQQ-WKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL  104 (282)
T ss_dssp             ----------SSSCEEEEEECGGGSC------HHHHHH-HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             ----------CCCCEEEEEECcccCC------HHHHHH-HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence                      1589999999999962      111222 2233345678999999999999999999887775

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=97.20  E-value=0.00048  Score=78.38  Aligned_cols=110  Identities=11%  Similarity=0.084  Sum_probs=81.7

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -.++|+..|...+......  .+..    .-++|+|+|.+. .++ +++..|..++++|....                 
T Consensus        85 ~~~iiDtpG~~~f~~~~~~--~~~~----aD~~ilVvDa~~-gsf-e~~~~~~~qt~~~~~~~-----------------  139 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMIT--GASQ----ADAAILVVSAKK-GEY-EAGMSVEGQTREHIILA-----------------  139 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHH--TSSC----CSEEEEEEECST-THH-HHHHSTTCHHHHHHHHH-----------------
T ss_pred             EEEEEECCCcHHHHHHHHh--hhhh----cCEEEEEEECCC-Ccc-ccccccchHHHHHHHHH-----------------
Confidence            4689999998554432222  2221    227899999999 444 88888999999887640                 


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCC-cEEEEEecccccc-CCChhHHHHHHHHHHHHHHHcC-----Cc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPV-PLILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG-----AS  544 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgi-PivVV~TK~D~~~-~~~~E~~d~Iq~~lR~fcl~yG-----As  544 (890)
                                                     ..+|+ |+|||+||+|+.. +++++..+.+...++.++..+|     +.
T Consensus       140 -------------------------------~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  188 (435)
T 1jny_A          140 -------------------------------KTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVR  188 (435)
T ss_dssp             -------------------------------HHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCE
T ss_pred             -------------------------------HHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCce
Confidence                                           01244 5899999999974 2566777889999999999998     67


Q ss_pred             eeEeccCChhhHH
Q psy11649        545 LLFHSSLDPGLVK  557 (890)
Q Consensus       545 L~ftS~K~~~n~~  557 (890)
                      .|.+|++.+.|++
T Consensus       189 ~i~iSA~~g~~v~  201 (435)
T 1jny_A          189 FVPVVAPSGDNIT  201 (435)
T ss_dssp             EEECBTTTTBTTT
T ss_pred             EEEeecccCcccc
Confidence            9999999999986

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.13  E-value=0.0001  Score=72.23  Aligned_cols=50  Identities=22%  Similarity=0.246  Sum_probs=38.9

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|||+||+|+...-.            .+|...++..|.||+|.+.|++.++..|...+
T Consensus       115 ~~p~ilv~NK~Dl~~~~~------------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  164 (172)
T 2gj8_A          115 KLPITVVRNKADITGETL------------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSM  164 (172)
T ss_dssp             TCCEEEEEECHHHHCCCC------------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             CCCEEEEEECccCCcchh------------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence            489999999999853211            11223578899999999999999999998765

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.07  E-value=0.0019  Score=72.58  Aligned_cols=61  Identities=18%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhh------------------HHHHHH
Q psy11649        506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL------------------VKRTRD  561 (890)
Q Consensus       506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n------------------~~~l~k  561 (890)
                      ++| +|||+||+|+..  +.+..+.+...++.++..+|     +..+++|++.+.|                  ++.|.+
T Consensus       127 ~ip~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~  204 (405)
T 2c78_A          127 GVPYIVVFMNKVDMVD--DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLD  204 (405)
T ss_dssp             TCCCEEEEEECGGGCC--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEEECccccC--cHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHH
Confidence            578 899999999974  45556778888999999988     5799999999998                  778888


Q ss_pred             HHhhhhc
Q psy11649        562 ILNHYAF  568 (890)
Q Consensus       562 yi~hr~f  568 (890)
                      .|...+-
T Consensus       205 ~l~~~lp  211 (405)
T 2c78_A          205 AIDEYIP  211 (405)
T ss_dssp             HHHHHSC
T ss_pred             HHHhhcC
Confidence            8877654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.02  E-value=0.00073  Score=72.01  Aligned_cols=58  Identities=14%  Similarity=0.111  Sum_probs=46.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++|+|||+||+|+...-.      +...+..++..+|...+.+|++.+.|++.|+..|...+..
T Consensus       112 ~~p~ivv~NK~Dl~~~~~------~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          112 GIPCIVALNMLDIAEKQN------IRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             TCCEEEEEECHHHHHHTT------EEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             CCCEEEEEECccchhhhh------HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            489999999999863211      1122466778889999999999999999999999887765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.98  E-value=0.0022  Score=72.14  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             cEEEEEeccccccCCChhHHHHHHHHHHHHHHHc---CCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y---GAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      |+|||+||+|+.   +.+........++.++..+   ++..|++|++.+.|++.|+.+|...+-
T Consensus       131 ~iivviNK~Dl~---~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          131 NLIIVQNKVDVV---SKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             CEEEEEECGGGS---CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CEEEEEECcccc---chHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            789999999997   3444445555666666555   567999999999999999999997664

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.98  E-value=0.0028  Score=70.04  Aligned_cols=57  Identities=12%  Similarity=0.159  Sum_probs=45.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++|+|+|+||+|+..   .+..    ..++.++...|...+++|++.+.|++.++..|...+..
T Consensus       280 ~~piilV~NK~Dl~~---~~~~----~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          280 DLPFLVVINKIDVAD---EENI----KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TSCEEEEECCTTTCC---HHHH----HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCC---hHHH----HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            478999999999873   2221    23455666889999999999999999999999887753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.98  E-value=0.00077  Score=71.29  Aligned_cols=55  Identities=15%  Similarity=0.063  Sum_probs=43.7

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      ++|+|||+||+|+...-.      +...+..++...|+..|.+|++.+.+++.|+..|...
T Consensus       110 ~~pvilv~NK~Dl~~~~~------~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          110 GKPVVVALNMMDIAEHRG------ISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CSCEEEEEECHHHHHHTT------CEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CCCEEEEEEChhcCCcCC------cHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            689999999999974211      1112445667779999999999999999999999876

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=96.95  E-value=0.00076  Score=76.72  Aligned_cols=79  Identities=11%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC---CCCCcceecccCC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS---SHLASAVNFDYNK  582 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg---~~~~~~~~v~~~d  582 (890)
                      ++|+|||+||+|+...-..       +.++.++.++|+..+++|+|++.|++.++..|...+..   +++ ...++.++|
T Consensus       140 ~~piIvV~NK~Dl~~~~~~-------~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~~e~~l-~~dLv~~gd  211 (423)
T 3qq5_A          140 EIPFVVVVNKIDVLGEKAE-------ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGDEEIPY-LGDLIDGGD  211 (423)
T ss_dssp             TCCEEEECCCCTTTTCCCT-------HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCCCCCCS-CSCCCCTTC
T ss_pred             CCCEEEEEeCcCCCCccHH-------HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhhccCcc-hhhccccCc
Confidence            3789999999999854333       44566778899999999999999999999999999843   222 234555566


Q ss_pred             ceEecCcCCc
Q psy11649        583 PIFVPFGTDS  592 (890)
Q Consensus       583 ~ifIPaGwDs  592 (890)
                      .+....-.|.
T Consensus       212 ~v~lv~pid~  221 (423)
T 3qq5_A          212 LVILVVPIDL  221 (423)
T ss_dssp             CEEEECCCSC
T ss_pred             eEEEEeeccc
Confidence            6665554443

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.93  E-value=0.0016  Score=74.06  Aligned_cols=50  Identities=14%  Similarity=0.009  Sum_probs=42.9

Q ss_pred             cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhhHHH
Q psy11649        508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR  558 (890)
Q Consensus       508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n~~~  558 (890)
                      |+|||+||+|+.. .+++..+.+...++.++..+|     +..|.+|++.+.|++.
T Consensus       159 ~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          159 HIVVAINKMDLNG-FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             EEEEEEECTTTTT-SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             eEEEEEEcCcCCc-ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            5899999999973 345667778899999999999     7889999999999986

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.88  E-value=0.0032  Score=70.67  Aligned_cols=61  Identities=18%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhh----------HHHHHHHHhhhhc
Q psy11649        506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGL----------VKRTRDILNHYAF  568 (890)
Q Consensus       506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n----------~~~l~kyi~hr~f  568 (890)
                      |+| +|||+||+|+..  +.+..+.+...++.++..+|     +..|++|++.+.|          ++.|.++|...+-
T Consensus       118 ~vp~iivviNK~Dl~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          118 GVEHVVVYVNKADAVQ--DSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             TCCCEEEEEECGGGCS--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CCCeEEEEEECcccCC--CHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            578 789999999974  45566778888999999988     5889999999876          7888888887654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.78  E-value=0.016  Score=66.30  Aligned_cols=143  Identities=16%  Similarity=0.126  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc------CC------CCCCCC-----------ccceeEEEEEEecc------------
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE------KN------DTPKPT-----------LALEYIYARKSGKT------------   79 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~------~~------~~~kpt-----------igvdY~f~~~~g~~------------   79 (890)
                      ..-|+++|.+||||||++.+|..      ..      +.+.+.           .++.+ +....+..            
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-FGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-ECCTTCCCHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-EecCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999974      11      122221           12221 00000000            


Q ss_pred             -ccceEEEEEEcCCCcch-hhHHhhh-h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649         80 -VMKDICHLWELGSGTSR-LEVASLF-S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGS  155 (890)
Q Consensus        80 -~~k~~l~IwDlpG~~~~-~~Li~~~-r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~  155 (890)
                       ..+..+-|+||+|.... ..+.... . ....   .++.+++|+|.+.....   +. ..+.+.+   .          
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~---~pd~vlLVvDA~~gq~a---~~-~a~~f~~---~----------  238 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI---HPHEVILVIDGTIGQQA---YN-QALAFKE---A----------  238 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH---CCSEEEEEEEGGGGGGH---HH-HHHHHHH---S----------
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhh---cCceEEEEEeCCCchhH---HH-HHHHHHh---h----------
Confidence             01135889999995432 1122111 0 0112   38899999998874332   11 1111111   1          


Q ss_pred             cccccccccccccccccCCCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649        156 FEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       156 l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L  228 (890)
                                         --+..||.||.|..      .+..   .+..++...|.++.|++.  |++++.|
T Consensus       239 -------------------~~i~gVIlTKlD~~------~~gG---~~ls~~~~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          239 -------------------TPIGSIIVTKLDGS------AKGG---GALSAVAATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             -------------------CTTEEEEEECCSSC------SSHH---HHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred             -------------------CCCeEEEEECCCCc------cccc---HHHHHHHHHCCCEEEEEc--CCChHHh
Confidence                               12457899999984      2222   234555678999999985  7777655

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0064  Score=59.66  Aligned_cols=56  Identities=20%  Similarity=0.116  Sum_probs=34.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCC-CchhHHHHHHHHHHHHHHH
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLS-RLNSLWTEAETFLAKFRAI  450 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS-~Pw~l~~sL~~W~~~~r~~  450 (890)
                      -..+|+..|...+...+.-  .+....-..-++|+|+|.+ .+.++ +.+..|+..+...
T Consensus        92 ~~~l~Dt~G~~~~~~~~~~--~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~  148 (193)
T 2ged_A           92 GVTLVDFPGHVKLRYKLSD--YLKTRAKFVKGLIFMVDSTVDPKKL-TTTAEFLVDILSI  148 (193)
T ss_dssp             TCSEEEETTCCBSSCCHHH--HHHHHGGGEEEEEEEEETTCCHHHH-HHHHHHHHHHHHH
T ss_pred             eEEEEECCCCchHHHHHHH--HHHhhcccCCEEEEEEECCCCchhH-HHHHHHHHHHHhh
Confidence            3579999998666544333  1211101124799999999 77776 6677776655543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.61  E-value=0.0028  Score=67.02  Aligned_cols=57  Identities=16%  Similarity=0.192  Sum_probs=44.7

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      +|+|||+||+|+...      +.+...++.++..+|++.+.||++.+.+++.++..|...+-+
T Consensus       110 ~p~ilv~NK~Dl~~~------~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          110 KNIILVLNKFDLLKK------KGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             CSEEEEEECHHHHHH------HTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEChhcCcc------cccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            789999999998631      111112566777789999999999999999999999887643

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.58  E-value=0.011  Score=67.28  Aligned_cols=23  Identities=26%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|+|.+||||||++++|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999999976

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=96.56  E-value=0.0036  Score=72.29  Aligned_cols=60  Identities=12%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc----CCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN----GASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y----GAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      |+|+|||+||+|+.   +++..+.+.+.++.++..+    ++..+.+|++.+.|++.|+.+|...+-
T Consensus       125 ~ip~IvviNK~Dl~---~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          125 NIPIIVVITKSDNA---GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TCCBCEEEECTTSS---CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCcc---cchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            58889999999997   3566777888889988877    688999999999999999999988764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=96.41  E-value=0.011  Score=66.05  Aligned_cols=58  Identities=9%  Similarity=-0.117  Sum_probs=47.3

Q ss_pred             CCcE-EEEEe-ccccccCCChhHHHHHHHHHHHHHHHcC---CceeE--eccCC---hhhHHHHHHHHhhhh
Q psy11649        506 PVPL-ILIGG-KYDLFENLEPNKKRIAVQCLRYLAHVNG---ASLLF--HSSLD---PGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPi-vVV~T-K~D~~~~~~~E~~d~Iq~~lR~fcl~yG---AsL~f--tS~K~---~~n~~~l~kyi~hr~  567 (890)
                      |+|. |||+| |+|+    +.+..+.+...++.++..+|   +..|+  +|++.   +.|++.|++.|...+
T Consensus       111 ~i~~~ivvvNNK~Dl----~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          111 GFKHGIIALTRSDST----HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA  178 (370)
T ss_dssp             TCCEEEEEECCGGGS----CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEeccCC----CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence            5677 89999 9998    34555666778888887776   67899  99999   999999999888764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.27  E-value=0.0082  Score=63.74  Aligned_cols=76  Identities=9%  Similarity=0.002  Sum_probs=52.4

Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|+|+.|+|+.+|.+.        .                           .+...++   ++|.++|.||+|+..  
T Consensus        21 ~~D~vl~VvDar~P~~~--------~---------------------------~~~l~ll---~k~~iivlNK~DL~~--   60 (262)
T 3cnl_A           21 LVNTVVEVRDARAPFAT--------S---------------------------AYGVDFS---RKETIILLNKVDIAD--   60 (262)
T ss_dssp             TCSEEEEEEETTSTTTT--------S---------------------------CTTSCCT---TSEEEEEEECGGGSC--
T ss_pred             hCCEEEEEeeCCCCCcC--------c---------------------------ChHHHhc---CCCcEEEEECccCCC--
Confidence            49999999999998774        0                           0111111   689999999999962  


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                          ........ .+....|.++ ++||+++.|+++|.+.+.
T Consensus        61 ----~~~~~~~~-~~~~~~g~~v-~iSa~~~~gi~~L~~~l~   96 (262)
T 3cnl_A           61 ----EKTTKKWV-EFFKKQGKRV-ITTHKGEPRKVLLKKLSF   96 (262)
T ss_dssp             ----HHHHHHHH-HHHHHTTCCE-EECCTTSCHHHHHHHHCC
T ss_pred             ----HHHHHHHH-HHHHHcCCeE-EEECCCCcCHHHHHHHHH
Confidence                11122222 2334567888 999999999999876653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=96.26  E-value=0.0068  Score=71.64  Aligned_cols=60  Identities=15%  Similarity=0.107  Sum_probs=38.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC--CC-----CCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND--TP-----KPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~--~~-----kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      ....|+|+|.||||||||+|+|++...  ..     ..|.|+- .+ ........+..+.++||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~-~~-~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW-MW-CVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEE-EE-EEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEE-Ee-ecccccCCCceEEEecCCCcCc
Confidence            367899999999999999999998532  11     1122221 11 1111112234799999999764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=96.26  E-value=0.0077  Score=68.58  Aligned_cols=56  Identities=20%  Similarity=0.077  Sum_probs=46.9

Q ss_pred             CCCc-EEEEEeccccc-cCCChhHHHHHHHHHHHHHHHcCC------ceeEeccCChhhHHHHH
Q psy11649        505 FPVP-LILIGGKYDLF-ENLEPNKKRIAVQCLRYLAHVNGA------SLLFHSSLDPGLVKRTR  560 (890)
Q Consensus       505 lgiP-ivVV~TK~D~~-~~~~~E~~d~Iq~~lR~fcl~yGA------sL~ftS~K~~~n~~~l~  560 (890)
                      +|+| +|||+||.|+. .++..+..+.+...++.|+..+|.      ..|++|++.+.|++.+.
T Consensus       153 ~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~  216 (439)
T 3j2k_7          153 AGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS  216 (439)
T ss_pred             cCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence            3677 99999999996 466677788889999999888774      68999999999999843

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.23  E-value=0.0053  Score=67.82  Aligned_cols=89  Identities=12%  Similarity=0.061  Sum_probs=65.4

Q ss_pred             eEEEEEEeCCC---chhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCccc
Q psy11649        422 FTLVLMLDLSR---LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFED  498 (890)
Q Consensus       422 ~~viivlDlS~---Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  498 (890)
                      -++|+|+|+|.   +..+ +.++.|...++.+...                                             
T Consensus       238 d~ll~VvD~s~~~~~~~~-~~~~~~~~eL~~~~~~---------------------------------------------  271 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPY-DDYLTINQELSEYNLR---------------------------------------------  271 (342)
T ss_dssp             CEEEEEEESSCSSCCCHH-HHHHHHHHHHHHSCSS---------------------------------------------
T ss_pred             cEEEEEEECCcccccChH-HHHHHHHHHHHHhhhh---------------------------------------------
Confidence            48999999998   5544 7888887766552110                                             


Q ss_pred             ccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649        499 KGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       499 ~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~fg~  570 (890)
                           ...+|+|||+||+|+..   .+      ..+..++..++  ...|.+|++...|++.|+..|...+...
T Consensus       272 -----l~~~p~ilV~NK~Dl~~---~~------e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          272 -----LTERPQIIVANKMDMPE---AA------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             -----TTTSCBCBEEECTTSTT---HH------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             -----hcCCCEEEEEECccCCC---CH------HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence                 02478899999999863   11      23445666666  5789999999999999999999888653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=96.18  E-value=0.017  Score=66.21  Aligned_cols=52  Identities=15%  Similarity=0.096  Sum_probs=44.2

Q ss_pred             CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCChhhHHH
Q psy11649        506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR  558 (890)
Q Consensus       506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~~n~~~  558 (890)
                      |+| +|||+||+|+. +.+++..+.+...++.++..+|     +..|.+|++.+.|++.
T Consensus       144 ~v~~iivviNK~Dl~-~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          144 GVRQLIVAVNKMDSV-KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             TCCEEEEEEECGGGG-TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCeEEEEEEccccc-cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            576 99999999998 4456777888899999998888     6899999999999863

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=96.14  E-value=0.038  Score=65.38  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=41.0

Q ss_pred             CCcEEEEEeccccccCCCh---------------hHHHHHH---HHHHHHHHHcC---------------CceeEeccCC
Q psy11649        506 PVPLILIGGKYDLFENLEP---------------NKKRIAV---QCLRYLAHVNG---------------ASLLFHSSLD  552 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~---------------E~~d~Iq---~~lR~fcl~yG---------------AsL~ftS~K~  552 (890)
                      ++|+|||+||+|+...+..               +-++.+.   ..+......+|               .+.+++|++.
T Consensus       122 ~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~t  201 (594)
T 1g7s_A          122 RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAIT  201 (594)
T ss_dssp             TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTT
T ss_pred             CCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccC
Confidence            4899999999999754432               1111111   12222223333               2689999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.+++.|...|...+
T Consensus       202 G~GI~eLl~~I~~~~  216 (594)
T 1g7s_A          202 GEGIPELLTMLMGLA  216 (594)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHhhc
Confidence            999999999988754

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.13  E-value=0.016  Score=62.58  Aligned_cols=143  Identities=13%  Similarity=0.063  Sum_probs=78.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc------CC------CCCCCC-----------ccceeEEEE---E------E--eccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE------KN------DTPKPT-----------LALEYIYAR---K------S--GKTV   80 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~------~~------~~~kpt-----------igvdY~f~~---~------~--g~~~   80 (890)
                      ...++++|.+|+||||++..|..      +.      +.+.+.           .++++....   .      .  ....
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            45688899999999999999874      11      111111           112110000   0      0  0000


Q ss_pred             -cceEEEEEEcCCCcc--hh-hHHhhh-h-ccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcc
Q psy11649         81 -MKDICHLWELGSGTS--RL-EVASLF-S-SFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRG  154 (890)
Q Consensus        81 -~k~~l~IwDlpG~~~--~~-~Li~~~-r-~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~  154 (890)
                       .+..+-|+||||...  .. .+.... . ....   .+|.+++|+|.+....   .+    +.++....          
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~---~~d~vllVvda~~g~~---~~----~~~~~~~~----------  237 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI---KPDEVTLVIDASIGQK---AY----DLASKFNQ----------  237 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH---CCSEEEEEEEGGGGGG---HH----HHHHHHHH----------
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHh---cCCEEEEEeeCCchHH---HH----HHHHHHHh----------
Confidence             223588999999866  32 222111 0 0012   3899999999875322   11    11111111          


Q ss_pred             ccccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649        155 SFEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       155 ~l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L  228 (890)
                                          .+| ..+|.||+|..      .+.   ..+..++...|.++.+++  .|++++.+
T Consensus       238 --------------------~~~i~gvVlnk~D~~------~~~---g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          238 --------------------ASKIGTIIITKMDGT------AKG---GGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             --------------------TCTTEEEEEECGGGC------TTH---HHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             --------------------hCCCCEEEEeCCCCC------cch---HHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence                                245 67899999973      221   234457778899999887  56666554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.13  E-value=0.0031  Score=68.72  Aligned_cols=85  Identities=16%  Similarity=0.067  Sum_probs=54.6

Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .++|.+++|+|+.+|..-.+.+.+++..+                                ...++|.+||.||+|+..+
T Consensus        85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~--------------------------------~~~~~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           85 CNVDQAVLVFSAVQPSFSTALLDRFLVLV--------------------------------EANDIQPIICITKMDLIED  132 (307)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHH--------------------------------HTTTCEEEEEEECGGGCCC
T ss_pred             HhCCEEEEEEeCCCCCCCHHHHHHHHHHH--------------------------------HHCCCCEEEEEECCccCch
Confidence            36999999999998776423344443211                                1236899999999999631


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRD  230 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~  230 (890)
                         +..+...+...+.....|..++++||+++.|+++|++
T Consensus       133 ---~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          133 ---QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred             ---hhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence               1100011223334445588999999999988876644

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=96.13  E-value=0.01  Score=70.38  Aligned_cols=108  Identities=10%  Similarity=-0.004  Sum_probs=73.8

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..|+|+..|...+.....-  .+...    -.+|+|+|.+...+. .+++.|....+                       
T Consensus        72 ~l~liDTPGh~dF~~ev~~--~l~~a----D~aILVVDa~~gv~~-qt~~~~~~~~~-----------------------  121 (599)
T 3cb4_D           72 QLNFIDTPGHVDFSYEVSR--SLAAC----EGALLVVDAGQGVEA-QTLANCYTAME-----------------------  121 (599)
T ss_dssp             EEEEEECCCCGGGHHHHHH--HHHHC----SEEEEEEETTTCCCT-HHHHHHHHHHH-----------------------
T ss_pred             EEEEEECCCchHHHHHHHH--HHHHC----CEEEEEEECCCCCCH-HHHHHHHHHHH-----------------------
Confidence            5689999998655543333  23222    268999999998776 66776754321                       


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC---ceeEe
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFH  548 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA---sL~ft  548 (890)
                                                       .++|+|+|+||+|+... +   .+.+.   ..++..+|.   ..+++
T Consensus       122 ---------------------------------~~ipiIvViNKiDl~~a-~---~~~v~---~ei~~~lg~~~~~vi~v  161 (599)
T 3cb4_D          122 ---------------------------------MDLEVVPVLNKIDLPAA-D---PERVA---EEIEDIVGIDATDAVRC  161 (599)
T ss_dssp             ---------------------------------TTCEEEEEEECTTSTTC-C---HHHHH---HHHHHHTCCCCTTCEEE
T ss_pred             ---------------------------------CCCCEEEeeeccCcccc-c---HHHHH---HHHHHHhCCCcceEEEe
Confidence                                             14789999999999742 1   12222   223334565   48999


Q ss_pred             ccCChhhHHHHHHHHhhhhcC
Q psy11649        549 SSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       549 S~K~~~n~~~l~kyi~hr~fg  569 (890)
                      |++.+.|++.|+..|...+-.
T Consensus       162 SAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          162 SAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             CTTTCTTHHHHHHHHHHHSCC
T ss_pred             ecccCCCchhHHHHHhhcCCC
Confidence            999999999999999987653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.08  E-value=0.021  Score=65.02  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..-|+++|.+||||||++..|..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~  119 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAY  119 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999974

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.08  E-value=0.01  Score=66.78  Aligned_cols=57  Identities=11%  Similarity=0.159  Sum_probs=36.3

Q ss_pred             cEEEEEeccccccCCC-hhHHHHHHHHHHHHHHH---cCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        508 PLILIGGKYDLFENLE-PNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       508 PivVV~TK~D~~~~~~-~E~~d~Iq~~lR~fcl~---yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      |+|||+||+|+...-. .+..+.|    +.++..   .++..|++|++.+.|++.|+.+|...+-
T Consensus       137 ~iivv~NK~Dl~~~~~~~~~~~~i----~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          137 KIIIVQNKIDLVDEKQAEENYEQI----KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             CEEEEEECTTSSCTTTTTTHHHHH----HHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             eEEEEEEccCCCCHHHHHHHHHHH----HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            7899999999974221 2233444    444444   3678999999999999999999998664

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.07  E-value=0.015  Score=67.14  Aligned_cols=113  Identities=14%  Similarity=0.042  Sum_probs=63.5

Q ss_pred             eEEEEeCCCcccccccccc-cccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLF-SSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~-~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      +.+|+..|.....+++.-+ ...+...+ ..-++++|+|.+.|.+. +.++.|...++.                     
T Consensus       283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-~~~~~~~~~l~~---------------------  340 (476)
T 3gee_A          283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD-DELTEIRELKAA---------------------  340 (476)
T ss_dssp             EEEEC--------------------CCCSSCSEEEEEEETTTCSSG-GGHHHHHHHHHH---------------------
T ss_pred             EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch-hhhHHHHHHHHh---------------------
Confidence            6899999976554443210 00011111 23379999999999876 333333332211                     


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                                               +.        ++|+|||+||+|+...-+.+.        ..++.......+.+|+
T Consensus       341 -------------------------l~--------~~piIvV~NK~Dl~~~~~~~~--------~~l~~~~~~~~i~vSA  379 (476)
T 3gee_A          341 -------------------------HP--------AAKFLTVANKLDRAANADALI--------RAIADGTGTEVIGISA  379 (476)
T ss_dssp             -------------------------CT--------TSEEEEEEECTTSCTTTHHHH--------HHHHHHHTSCEEECBT
T ss_pred             -------------------------cC--------CCCEEEEEECcCCCCccchhH--------HHHHhcCCCceEEEEE
Confidence                                     00        378999999999975322211        2222222368899999


Q ss_pred             CChhhHHHHHHHHhhhhc
Q psy11649        551 LDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~f  568 (890)
                      |.+.|++.|++.|...+.
T Consensus       380 ktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          380 LNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTTBSHHHHHHHHTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999999886

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.96  E-value=0.019  Score=63.88  Aligned_cols=63  Identities=16%  Similarity=0.070  Sum_probs=44.1

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc---CCceeEeccCChhhHHHHHHHHhhhhcCCCC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYAFSSHL  572 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y---GAsL~ftS~K~~~n~~~l~kyi~hr~fg~~~  572 (890)
                      ++|+|+|++|+|+...-   . ......+..++..+   +..++++|++.+.+++.|++.|...+...++
T Consensus       292 ~~p~ilV~NK~Dl~~~~---~-~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          292 GKPILVTLNKIDKINGD---L-YKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             SCCEEEEEECGGGCCSC---H-HHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEECCCCCCch---H-HHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence            37899999999997432   1 11122233444444   3368999999999999999999988776444

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=95.93  E-value=0.025  Score=63.59  Aligned_cols=58  Identities=12%  Similarity=0.153  Sum_probs=43.6

Q ss_pred             cEEEEEeccccccCCChhHHHHHHHHHHHHHHH---cCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV---NGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~---yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      |+|||+||+|+..   .+........++.++..   .++..|++|++.+.|++.|+.+|...+-
T Consensus       139 ~iivviNK~Dl~~---~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          139 NIIIAQNKIELVD---KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             CEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cEEEEEECccCCC---HHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6899999999973   23222333445556554   4678999999999999999999998664

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=95.90  E-value=0.013  Score=69.37  Aligned_cols=108  Identities=13%  Similarity=0.055  Sum_probs=74.2

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+..|...+.....-  .+...    -.+|+|+|-+.+.+. .+++.|....+                       
T Consensus        74 ~inliDTPGh~dF~~ev~r--~l~~a----D~aILVVDa~~gv~~-qt~~~~~~a~~-----------------------  123 (600)
T 2ywe_A           74 KLHLIDTPGHVDFSYEVSR--ALAAC----EGALLLIDASQGIEA-QTVANFWKAVE-----------------------  123 (600)
T ss_dssp             EEEEECCCCSGGGHHHHHH--HHHTC----SEEEEEEETTTBCCH-HHHHHHHHHHH-----------------------
T ss_pred             EEEEEECCCcHhHHHHHHH--HHHhC----CEEEEEEECCCCccH-HHHHHHHHHHH-----------------------
Confidence            5689999998655443333  23221    268899999999876 66777754220                       


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC---ceeEe
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA---SLLFH  548 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA---sL~ft  548 (890)
                                                       .++|+|+|+||+|+... +   .+.   .+..++..+|.   ..+++
T Consensus       124 ---------------------------------~~ipiIvviNKiDl~~a-~---~~~---v~~el~~~lg~~~~~vi~v  163 (600)
T 2ywe_A          124 ---------------------------------QDLVIIPVINKIDLPSA-D---VDR---VKKQIEEVLGLDPEEAILA  163 (600)
T ss_dssp             ---------------------------------TTCEEEEEEECTTSTTC-C---HHH---HHHHHHHTSCCCGGGCEEC
T ss_pred             ---------------------------------CCCCEEEEEeccCcccc-C---HHH---HHHHHHHhhCCCcccEEEE
Confidence                                             14889999999998632 1   112   22334444565   38999


Q ss_pred             ccCChhhHHHHHHHHhhhhcC
Q psy11649        549 SSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       549 S~K~~~n~~~l~kyi~hr~fg  569 (890)
                      |++.+.|++.|+..|...+-.
T Consensus       164 SAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          164 SAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             BTTTTBSHHHHHHHHHHHSCC
T ss_pred             EeecCCCchHHHHHHHHhccc
Confidence            999999999999999987754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.87  E-value=0.029  Score=60.66  Aligned_cols=57  Identities=25%  Similarity=0.272  Sum_probs=41.6

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++|+|+|+||+|+...   +. + +...++.+  ...+..+.+|++.+.|++.|+..|...+..
T Consensus       117 ~~p~ilV~NK~Dl~~~---~~-~-~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          117 KVPILLVGNKLDAAKY---PE-E-AMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             TSCEEEEEECGGGCSS---HH-H-HHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             CCCEEEEEECcccCCc---hH-H-HHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            4899999999999732   11 1 33444444  123578999999999999999999887643

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=95.86  E-value=0.019  Score=72.27  Aligned_cols=61  Identities=18%  Similarity=0.249  Sum_probs=49.9

Q ss_pred             CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----CceeEeccCCh--------hhHHHHHHHHhhhhc
Q psy11649        506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDP--------GLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~ftS~K~~--------~n~~~l~kyi~hr~f  568 (890)
                      |+| +|||+||+|+..  +.+..+.+...++.++..+|     ++.|++|++.+        .+++.|+..|...+-
T Consensus       411 gIP~IIVVINKiDLv~--d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          411 GVPYIIVFLNKCDMVD--DEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TCSCEEEEEECCTTCC--CHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             CCCeEEEEEeeccccc--chhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            578 899999999974  34556778888999999988     57999999998        568888888887553

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=95.62  E-value=0.027  Score=64.78  Aligned_cols=49  Identities=16%  Similarity=-0.030  Sum_probs=41.2

Q ss_pred             cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-----ceeEeccCChhhHH
Q psy11649        508 PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-----SLLFHSSLDPGLVK  557 (890)
Q Consensus       508 PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-----sL~ftS~K~~~n~~  557 (890)
                      |+|||+||+|+.. .+.+..+.+...++.+...+|.     ..|.+|++.+.|++
T Consensus       173 ~iIvviNK~Dl~~-~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~  226 (483)
T 3p26_A          173 NLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVY  226 (483)
T ss_dssp             CEEEEEECGGGGT-TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSS
T ss_pred             cEEEEEECcCccc-chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcc
Confidence            5999999999973 4567778888889988887765     67999999999987

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=95.59  E-value=0.013  Score=67.12  Aligned_cols=55  Identities=16%  Similarity=0.103  Sum_probs=45.5

Q ss_pred             CCCc-EEEEEeccccc-cCCChhHHHHHHHHHHHHHHHc-C------CceeEeccCChhhHHHH
Q psy11649        505 FPVP-LILIGGKYDLF-ENLEPNKKRIAVQCLRYLAHVN-G------ASLLFHSSLDPGLVKRT  559 (890)
Q Consensus       505 lgiP-ivVV~TK~D~~-~~~~~E~~d~Iq~~lR~fcl~y-G------AsL~ftS~K~~~n~~~l  559 (890)
                      +|+| +|||+||+|+. .+++++..+.+...++.++..+ |      +..|.+|++.+.|++.+
T Consensus       179 ~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          179 QGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             TTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             cCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence            3687 99999999997 3566777888888899998887 5      55899999999998753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=95.56  E-value=0.024  Score=67.40  Aligned_cols=53  Identities=15%  Similarity=-0.006  Sum_probs=43.7

Q ss_pred             CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-----ceeEeccCChhhHHHH
Q psy11649        506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-----SLLFHSSLDPGLVKRT  559 (890)
Q Consensus       506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-----sL~ftS~K~~~n~~~l  559 (890)
                      |+| +|||+||+|+.. ...+..+.+...++.++..+|+     ..|.+|++.+.|++.+
T Consensus       304 gi~~iIVVvNKiDl~~-~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          304 GIHNLIIAMNKMDNVD-WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             TCCEEEEEEECTTTTT-TCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             CCCeEEEEEecccccc-hhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            454 999999999973 4567778888999999888875     7899999999999743

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.49  E-value=0.055  Score=60.16  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=36.5

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDI  231 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~  231 (890)
                      ++|.+||.||+|+..   ++........+ ......|.+++++||+++.|++.+...
T Consensus       160 ~~~~iivlNK~DL~~---~~~~~~~~~~~-~~y~~~G~~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          160 QVEPLIVLNKIDLLD---DEGMDFVNEQM-DIYRNIGYRVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             TCEEEEEEECGGGCC---HHHHHHHHHHH-HHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred             CCCEEEEEECccCCC---chhHHHHHHHH-HHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence            688999999999963   11111122222 223456889999999999999998654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=95.31  E-value=0.038  Score=64.49  Aligned_cols=25  Identities=20%  Similarity=0.109  Sum_probs=22.5

Q ss_pred             ceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      +.||+|++.+.+++.|...|...+-
T Consensus       252 PV~~gSA~~~~GV~~Lld~i~~~~p  276 (528)
T 3tr5_A          252 PIFFGSAINNFGVGELLDAFVKEAP  276 (528)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred             EEEeccccCCccHHHHHHHHHHhCC
Confidence            6799999999999999999988764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.25  E-value=0.051  Score=64.45  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .|+|+|++|||||||++.++|-
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            4999999999999999999984

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.17  E-value=0.016  Score=66.62  Aligned_cols=54  Identities=20%  Similarity=0.231  Sum_probs=40.3

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      .|+|||+||+|+...-..+       .++.++  .+...+.+|+|.+.+++.|++.|...+..
T Consensus       331 ~piivV~NK~Dl~~~~~~~-------~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          331 RPLILVMNKIDLVEKQLIT-------SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             SCEEEEEECTTSSCGGGST-------TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCcchhhH-------HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4789999999997432211       111112  46788999999999999999999998875

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=94.91  E-value=0.056  Score=62.35  Aligned_cols=55  Identities=9%  Similarity=0.097  Sum_probs=42.0

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      +|+|||+||+|+....+.   +.    ++.++ .+++..|++|+|.+.|++.|+..|...+++
T Consensus       351 ~piivV~NK~DL~~~~~~---~~----~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          351 KRYLVVINKVDVVEKINE---EE----IKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             SSEEEEEEECSSCCCCCH---HH----HHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             CCEEEEEECcccccccCH---HH----HHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            689999999999754332   12    22332 256789999999999999999999988764

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=94.86  E-value=0.019  Score=57.98  Aligned_cols=43  Identities=23%  Similarity=0.209  Sum_probs=31.2

Q ss_pred             CCcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649          1 MGPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus         1 ~~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      |+.+.+.+.+.+.+...   . .          ....|+|+|.+|||||||++.|.+
T Consensus         2 m~~~~~~~~~~~~~~~~---~-~----------~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A            2 MTLAALCQGVLERLDPR---Q-P----------GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CCHHHHHHHHHHHSCTT---C-C----------SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhc---C-C----------CCeEEEEECCCCCCHHHHHHHHHH
Confidence            55566777666665433   1 1          124799999999999999999987

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.67  E-value=0.097  Score=53.71  Aligned_cols=59  Identities=12%  Similarity=0.059  Sum_probs=37.7

Q ss_pred             CcEEEEEeccccccCCChhHHHHHH---HHHHHHHHHcCCceeEeccCC-----hhhHHHHHHHHhhhh
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAV---QCLRYLAHVNGASLLFHSSLD-----PGLVKRTRDILNHYA  567 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq---~~lR~fcl~yGAsL~ftS~K~-----~~n~~~l~kyi~hr~  567 (890)
                      .|+|||+||+|....  .+..++++   ..++.++..+|...++.+.+.     ..++..|.+.|...+
T Consensus       146 ~~~iiv~nK~D~~~~--~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          146 SFMILIFTRKDDLGD--TNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             GGEEEEEECGGGC--------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCccCCc--ccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence            578999999999743  22234443   468888999999887777663     257777777665554

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=94.61  E-value=0.009  Score=69.88  Aligned_cols=62  Identities=18%  Similarity=0.090  Sum_probs=41.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++|+|||+||+|+...-..+....+.. ...+|..+|  ...|++|++.+.|++.|+..|...+-
T Consensus       104 ~vPiIVViNKiDl~~~~~~~v~~~l~~-~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          104 HVPIVLAINKCDKAEADPEKVKKELLA-YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             TCCEEECCBSGGGTTTSCCSSSSHHHH-TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             CCcEEEEEecccccccchHHHHHHHHh-hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence            589999999999863211111111111 112233444  47899999999999999999987764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=94.54  E-value=0.19  Score=52.13  Aligned_cols=60  Identities=18%  Similarity=0.088  Sum_probs=41.8

Q ss_pred             CcEEEEEe-ccccccCCChhHHHHHH----HHHHHHHHHcCCce-----eEeccCChhhHHHHHHHHhhhhcC
Q psy11649        507 VPLILIGG-KYDLFENLEPNKKRIAV----QCLRYLAHVNGASL-----LFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       507 iPivVV~T-K~D~~~~~~~E~~d~Iq----~~lR~fcl~yGAsL-----~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      .|+|||+| |+|+..   .+..+++.    ..++.++..++..+     +.+|++.+.+++.+++.|...+-.
T Consensus       139 ~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          139 GHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             GGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEEcccccCC---ccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            45566666 999973   22334443    44566666666543     679999999999999999877643

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.42  E-value=0.012  Score=62.41  Aligned_cols=57  Identities=19%  Similarity=0.112  Sum_probs=38.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccCChhhHHHHHHHHhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K~~~n~~~l~kyi~h  565 (890)
                      ++|+|+|+||+|+...-. +..+.++..+  +++..| +.++.+|++.+.|++.++..|..
T Consensus       192 ~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~--~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          192 GQRTIGVITKLDLMDEGT-DARDVLENKL--LPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             CSSEEEEEECGGGSCTTC-CCHHHHTTCS--SCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             CCeEEEEEEccccCCCCc-hHHHHHhCCc--CcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            579999999999984322 1123333211  223335 57889999999999988887764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=93.85  E-value=0.19  Score=51.88  Aligned_cols=60  Identities=12%  Similarity=-0.001  Sum_probs=40.5

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHH-------H-----------------HHHHcC--CceeEeccCChhhHHHH
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLR-------Y-----------------LAHVNG--ASLLFHSSLDPGLVKRT  559 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR-------~-----------------fcl~yG--AsL~ftS~K~~~n~~~l  559 (890)
                      ++|++||+||+|+....   ..+.+...++       .                 ++..++  +..+.+|++.+.|++.|
T Consensus       171 ~~p~~iv~NK~D~~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l  247 (262)
T 1yrb_A          171 GATTIPALNKVDLLSEE---EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDL  247 (262)
T ss_dssp             TSCEEEEECCGGGCCHH---HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHH
T ss_pred             CCCeEEEEecccccccc---cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHH
Confidence            47889999999997432   1111222111       1                 134444  58999999999999999


Q ss_pred             HHHHhhhhc
Q psy11649        560 RDILNHYAF  568 (890)
Q Consensus       560 ~kyi~hr~f  568 (890)
                      +++|...+.
T Consensus       248 ~~~i~~~~~  256 (262)
T 1yrb_A          248 ETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999976653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.68  E-value=0.033  Score=55.49  Aligned_cols=23  Identities=35%  Similarity=0.661  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .+++|+|++|||||||++.+++.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999873

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=93.61  E-value=0.025  Score=64.84  Aligned_cols=102  Identities=9%  Similarity=0.036  Sum_probs=56.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccc-eEEEEEEcCCCcch--hhHH--hhh--hc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMK-DICHLWELGSGTSR--LEVA--SLF--SS  105 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k-~~l~IwDlpG~~~~--~~Li--~~~--r~  105 (890)
                      ....|+++|.+||||||+.++|...-. ...++..+...  ......... ....+||..|...+  ....  ...  ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d--~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG--QYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH--HHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc--hhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999986311 11122221100  000010011 23578999997322  2221  011  01


Q ss_pred             cccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHH
Q psy11649        106 FSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRA  141 (890)
Q Consensus       106 ~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e  141 (890)
                      ..+.  +..+.++|+|.++...  +....|.+.+++
T Consensus       116 ~~l~--~~~G~~vV~D~tn~~~--~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLS--EEGGHVAVFDATNTTR--ERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHH--TTCCSEEEEESCCCSH--HHHHHHHHHHHH
T ss_pred             HHHH--hCCCCEEEEeCCCCCH--HHHHHHHHHHHh
Confidence            1121  3678899999999854  566777765544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=93.41  E-value=0.24  Score=56.01  Aligned_cols=91  Identities=21%  Similarity=0.168  Sum_probs=66.3

Q ss_pred             eEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccccccccccccCCCcchhcCCCcCCcccccc
Q psy11649        422 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGL  501 (890)
Q Consensus       422 ~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l  501 (890)
                      -.++.++|++ + ..+.++..|.+++......+                                               
T Consensus       237 ~~lL~vvDls-~-~~~~~ls~g~~el~~la~aL-----------------------------------------------  267 (416)
T 1udx_A          237 RVLLYVLDAA-D-EPLKTLETLRKEVGAYDPAL-----------------------------------------------  267 (416)
T ss_dssp             SEEEEEEETT-S-CHHHHHHHHHHHHHHHCHHH-----------------------------------------------
T ss_pred             HhhhEEeCCc-c-CCHHHHHHHHHHHHHHhHHh-----------------------------------------------
Confidence            4789999998 3 34477888877776543210                                               


Q ss_pred             cccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcCCC
Q psy11649        502 IRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       502 ~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg~~  571 (890)
                         ...|.|||++|.|....   +.    ...++..+...|.++|++|++...+++.|+..|...+...+
T Consensus       268 ---~~~P~ILVlNKlDl~~~---~~----~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          268 ---LRRPSLVALNKVDLLEE---EA----VKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             ---HHSCEEEEEECCTTSCH---HH----HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             ---hcCCEEEEEECCChhhH---HH----HHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence               02577999999998742   22    23345555667999999999999999999999999887543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=93.23  E-value=1.2  Score=50.46  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFL   56 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~   56 (890)
                      ...|+++|.+||||||+...|.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999999987

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=93.22  E-value=0.018  Score=66.79  Aligned_cols=61  Identities=20%  Similarity=0.095  Sum_probs=39.1

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|||+||+|+...-.++-...+.+ ...++..+|  ...|++|++.+.|++.|+..|....
T Consensus       103 ~vPiIVviNKiDl~~~~~~~v~~~l~~-~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~  165 (501)
T 1zo1_I          103 QVPVVVAVNKIDKPEADPDRVKNELSQ-YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQA  165 (501)
T ss_dssp             TCCEEEEEECSSSSTTCCCCTTCCCCC-CCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTC
T ss_pred             CceEEEEEEeccccccCHHHHHHHHHH-hhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhh
Confidence            589999999999863100000000000 011233455  6899999999999999999987643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=93.02  E-value=0.045  Score=54.01  Aligned_cols=23  Identities=30%  Similarity=0.637  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .-++|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999999873

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=92.85  E-value=0.068  Score=53.89  Aligned_cols=60  Identities=8%  Similarity=0.038  Sum_probs=41.4

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      +.|++||+||+|+...-+ ...+.+.+.++.+  ..++..++||++.+.|++.++..|...+.
T Consensus       164 ~~~~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVG-ADIKKMENDAKRI--NPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TTCSEEEEECGGGHHHHT-CCHHHHHHHHHHH--CTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhH-HHHHHHHHHHHHh--CCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            468899999999863210 1122333333332  23688999999999999999999987653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=92.77  E-value=0.11  Score=55.89  Aligned_cols=60  Identities=5%  Similarity=-0.050  Sum_probs=40.4

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      .+|+++|++|.|+..   +++.....+.++.+|..+|+..+.+|++++ |++.++..+...+..
T Consensus       155 ~~~iilV~~K~Dl~~---~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          155 KVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             TSCEEEEECCGGGSC---HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCC---HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            479999999999973   333344456788899999999999999999 999999888877753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.74  E-value=0.067  Score=53.72  Aligned_cols=60  Identities=12%  Similarity=-0.032  Sum_probs=43.5

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      +|++||+||+|+..... ...+.+.+.++.+  ..++..+++|++.+.|++.++.+|...++.
T Consensus       155 ~~~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          155 VADLIVINKVALAEAVG-ADVEKMKADAKLI--NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             TCSEEEEECGGGHHHHT-CCHHHHHHHHHHH--CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             cCCEEEEecccCCcchh-hHHHHHHHHHHHh--CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            67799999999863210 1234445555543  235889999999999999999999988764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=92.62  E-value=0.054  Score=54.47  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..++|+|++|||||||++.|++
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999987

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=92.53  E-value=0.11  Score=62.51  Aligned_cols=64  Identities=14%  Similarity=0.209  Sum_probs=41.5

Q ss_pred             CCcEEEEEeccccccC--CChh---HHH----HHHHHH----HHHHH-----HcCCceeEeccC--------------Ch
Q psy11649        506 PVPLILIGGKYDLFEN--LEPN---KKR----IAVQCL----RYLAH-----VNGASLLFHSSL--------------DP  553 (890)
Q Consensus       506 giPivVV~TK~D~~~~--~~~E---~~d----~Iq~~l----R~fcl-----~yGAsL~ftS~K--------------~~  553 (890)
                      +.|+++|+||+|+...  .+.+   ..+    .+.+.+    ..++.     ..+..+|++|++              .+
T Consensus       230 ~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~  309 (695)
T 2j69_A          230 GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDG  309 (695)
T ss_dssp             CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTT
T ss_pred             CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhc
Confidence            5789999999999743  1221   112    222222    22221     123578999999              99


Q ss_pred             hhHHHHHHHHhhhhcC
Q psy11649        554 GLVKRTRDILNHYAFS  569 (890)
Q Consensus       554 ~n~~~l~kyi~hr~fg  569 (890)
                      .+++.|..+|...+..
T Consensus       310 ~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          310 TGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999887754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=92.47  E-value=0.062  Score=52.78  Aligned_cols=23  Identities=35%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      ..|+|+|.+|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999884

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=92.33  E-value=0.61  Score=52.35  Aligned_cols=47  Identities=11%  Similarity=0.097  Sum_probs=33.2

Q ss_pred             CCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHH
Q psy11649        505 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKR  558 (890)
Q Consensus       505 lgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~  558 (890)
                      ..+|+|+|++|.|..   ..+..+.+    +..+-..|+.+|.+|++.+.+++.
T Consensus       213 ~~kP~i~v~NK~D~~---~~~~l~~l----~~~~~~~~~~vv~iSA~~e~~l~~  259 (397)
T 1wxq_A          213 VNKPMVIAANKADAA---SDEQIKRL----VREEEKRGYIVIPTSAAAELTLRK  259 (397)
T ss_dssp             HHSCEEEEEECGGGS---CHHHHHHH----HHHHHHTTCEEEEECHHHHHHHHS
T ss_pred             cCCCEEEEEeCcccc---chHHHHHH----HHHHhhcCCcEEEEeccchhhHHH
Confidence            359999999999986   23322222    223333489999999999999864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=92.33  E-value=0.1  Score=54.99  Aligned_cols=59  Identities=10%  Similarity=0.022  Sum_probs=39.3

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|+|+||+|+.   +.+......+.++..+..+|...+-+|++.+.+++.+.+.|...+
T Consensus       144 ~~pvi~V~nK~D~~---~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          144 KVNIIPLIAKADTL---TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             TSCEEEEESSGGGS---CHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             cCCEEEEEeccCCC---CHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            69999999999996   555666666678888888999988899999999999999888753

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=92.30  E-value=0.098  Score=61.86  Aligned_cols=61  Identities=10%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             CCCc-EEEEEeccccccCCChhHHHHHHHHHHHHH-HHcCC-----ceeEeccCChhhHH--------------HHHHHH
Q psy11649        505 FPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNGA-----SLLFHSSLDPGLVK--------------RTRDIL  563 (890)
Q Consensus       505 lgiP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc-l~yGA-----sL~ftS~K~~~n~~--------------~l~kyi  563 (890)
                      +|+| +|||+||+|+. +.+.+..+.+.+.++.++ ..+|.     ..|++|++.+.|++              .|...|
T Consensus       313 lgip~iIvviNKiDl~-~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l  391 (592)
T 3mca_A          313 LGISEIVVSVNKLDLM-SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSAL  391 (592)
T ss_dssp             SSCCCEEEEEECGGGG-TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHH
T ss_pred             cCCCeEEEEEeccccc-cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHH
Confidence            4676 99999999987 356777888889999998 77776     58999999999997              677777


Q ss_pred             hhh
Q psy11649        564 NHY  566 (890)
Q Consensus       564 ~hr  566 (890)
                      ...
T Consensus       392 ~~~  394 (592)
T 3mca_A          392 DQL  394 (592)
T ss_dssp             HTS
T ss_pred             Hhh
Confidence            654

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=92.30  E-value=0.44  Score=54.41  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..-|.|+|.+++|||+|+|+|++
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Confidence            45689999999999999999985

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.24  E-value=0.076  Score=54.91  Aligned_cols=23  Identities=22%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|+|.+|||||||++.|..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999983

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=92.23  E-value=0.065  Score=53.16  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -++|+|.+|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999873

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=92.01  E-value=0.075  Score=58.86  Aligned_cols=58  Identities=5%  Similarity=-0.020  Sum_probs=35.0

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|+|+||+|+..   ++.....-..++.++..+|+..+++|++.+.| +..+..+...+
T Consensus       174 ~~piIlV~NK~Dl~~---~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i  231 (361)
T 2qag_A          174 KVNIVPVIAKADTLT---LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL  231 (361)
T ss_dssp             -SCEEEEEECCSSSC---HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred             CCCEEEEEECCCCCC---HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence            589999999999973   33333344678889999999999999999988 55444444444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=91.89  E-value=0.17  Score=50.76  Aligned_cols=44  Identities=18%  Similarity=0.145  Sum_probs=31.0

Q ss_pred             CCcchHHHHHHHHhccCCCCCCCCccccccCCccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649          1 MGPKSLKDIAIELAHGKHPSPSSSEVHKIDIQSQERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus         1 ~~~~~lw~~il~~v~~~~~~r~~~~~~~~~~~~~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      |++..+-+.+.+.+.....             ....-|+|+|.+|||||||++.|.+
T Consensus         1 ~~~~~~~~~l~~~~~~~~~-------------~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A            1 MELRDRIDFLCKTILAIKT-------------AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             CCHHHHHHHHHHHHHTSCC-------------SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhcc-------------CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4555666666666543321             1134699999999999999999876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=91.87  E-value=0.075  Score=53.56  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -++|+|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999883

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.53  E-value=0.13  Score=58.40  Aligned_cols=56  Identities=11%  Similarity=0.038  Sum_probs=35.1

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  564 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~  564 (890)
                      ++|+|+|++|+|+.   +++......+.++.+|..+|+..+++|++++.|++.++..|.
T Consensus       167 ~v~iIlVinK~Dll---~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~  222 (418)
T 2qag_C          167 KVNIIPLIAKADTL---TPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIK  222 (418)
T ss_dssp             TSEEEEEEESTTSS---CHHHHHHHHHHHHHHHHHHTCCCCCCC---------------
T ss_pred             cCcEEEEEEcccCc---cHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHH
Confidence            79999999999997   445555566788999999999999999999999987554443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=91.49  E-value=0.47  Score=56.80  Aligned_cols=26  Identities=8%  Similarity=-0.183  Sum_probs=22.9

Q ss_pred             CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        543 ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       543 AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      .+++++|++.+.+++.|...|...+-
T Consensus       248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp  273 (665)
T 2dy1_A          248 YPVALASGEREIGVLPLLELILEALP  273 (665)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCC
Confidence            46899999999999999999988763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=91.45  E-value=0.11  Score=52.98  Aligned_cols=25  Identities=36%  Similarity=0.611  Sum_probs=21.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      ...-|+|+|++|||||||+++|.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4457999999999999999999873

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=91.42  E-value=0.088  Score=53.78  Aligned_cols=22  Identities=36%  Similarity=0.690  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|++|||||||++.|++.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999883

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=91.30  E-value=0.093  Score=54.07  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .-++|+|++|||||||++.|.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36899999999999999999884

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=91.12  E-value=0.098  Score=51.22  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -++++|.+|||||||++.+.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHcc
Confidence            489999999999999997653

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=91.01  E-value=0.2  Score=47.88  Aligned_cols=22  Identities=32%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..++|.|++|+|||+|++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=90.89  E-value=0.11  Score=50.04  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|+|+|.+|||||||.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999987

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=90.87  E-value=0.11  Score=52.49  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .-|+|+|++|||||||++.|.+.
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=90.74  E-value=0.13  Score=49.31  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .|+|+|.+||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=90.70  E-value=0.13  Score=50.83  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      ..|+|+|.+||||||+++.|.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=90.60  E-value=0.16  Score=49.19  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|+|.+||||||+.+.|.+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34699999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=90.42  E-value=0.13  Score=50.66  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -++|+|.+|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999986

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=90.39  E-value=0.13  Score=49.53  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .-|+|+|.+||||||+.++|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=90.31  E-value=0.13  Score=51.52  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .-|+|+|.+|||||||.++|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            45899999999999999999863

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=90.30  E-value=0.14  Score=48.69  Aligned_cols=19  Identities=26%  Similarity=0.427  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q psy11649         37 TLLLIGTKSVGKSTLVFRF   55 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL   55 (890)
                      -|+|+|.+||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999999

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=90.26  E-value=0.48  Score=46.81  Aligned_cols=60  Identities=15%  Similarity=0.169  Sum_probs=44.9

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC--CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG--ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG--AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++|+++|++|+|..+   ..++......+|.++...+  ...+.||++.+.+++.++++|...+-
T Consensus       137 ~~~~~~v~nK~D~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          137 NIAVLVLLTKADKLA---SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             TCCEEEEEECGGGSC---HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEecccCCC---chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            588999999999863   3333333455677776665  44578999999999999999987654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=90.21  E-value=0.13  Score=53.40  Aligned_cols=22  Identities=23%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999873

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=90.16  E-value=0.15  Score=51.45  Aligned_cols=57  Identities=16%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCC------------CCC--CCccceeEEEEEEe---ccccceEEEEEEcCCCc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKND------------TPK--PTLALEYIYARKSG---KTVMKDICHLWELGSGT   94 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~~------------~~k--ptigvdY~f~~~~g---~~~~k~~l~IwDlpG~~   94 (890)
                      |+|+|++|||||||+++|+....            .+.  ..-|.+|.|.....   ....+.-+.-|...|..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~   77 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNY   77 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCce
Confidence            89999999999999999986311            111  22367787755441   11112245666666643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=90.06  E-value=0.16  Score=49.45  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=90.01  E-value=0.15  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .-|+|+|.+|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=89.99  E-value=0.16  Score=49.37  Aligned_cols=22  Identities=32%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|+|.|.+||||||+.+.|..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999976

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=89.99  E-value=0.17  Score=50.69  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|+|+|..|||||||++.|.+
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999987

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=89.96  E-value=0.59  Score=50.13  Aligned_cols=59  Identities=20%  Similarity=0.122  Sum_probs=47.5

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      ++|+|+|+||.|...+     .+.+...+..++..+|. ..+.+|++.+.|++.|...|...+..
T Consensus       116 ~~P~ilvlNK~D~~~~-----~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          116 KAPVILAVNKVDNVQE-----KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             SSCEEEEEESTTTCCC-----HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             CCCEEEEEECcccCcc-----HHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            5899999999999741     23456667778877886 68899999999999999999877643

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=89.93  E-value=0.16  Score=49.96  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .|+|+|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999999986

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=89.88  E-value=0.15  Score=52.64  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999873

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=89.87  E-value=0.15  Score=49.80  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -++|+|+.|+|||||++.+++.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999884

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=89.65  E-value=0.35  Score=56.37  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=20.6

Q ss_pred             ceeEeccCChhhHHHHHHHHhhhh
Q psy11649        544 SLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       544 sL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      +.||.|++.+..++.|...|...+
T Consensus       253 Pv~~gSA~~~~Gv~~LLd~i~~~~  276 (529)
T 2h5e_A          253 PVFFGTALGNFGVDHMLDGLVEWA  276 (529)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             EEEeeecccCCCHHHHHHHHHHhC
Confidence            578899999999998888888875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=89.65  E-value=0.17  Score=50.24  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.|+|+|.+||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3699999999999999999987

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=89.62  E-value=0.17  Score=50.72  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|+|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999965

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=89.50  E-value=0.18  Score=52.75  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=89.49  E-value=0.14  Score=50.06  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..++|+|++|+|||||++.+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999887

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=89.44  E-value=0.16  Score=50.93  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      --++|+|++|||||||++.+++
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999987

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=89.39  E-value=0.21  Score=49.46  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999976

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=89.37  E-value=0.16  Score=51.18  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|.+|+|||||++.+++.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            4899999999999999999873

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=89.36  E-value=0.19  Score=50.57  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|+|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999976

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=89.31  E-value=0.22  Score=49.48  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=22.4

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ....+.|+|+|.+||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44457899999999999999999876

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=89.29  E-value=0.24  Score=48.40  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..-|+|+|.+||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=89.28  E-value=0.17  Score=52.60  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+++-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999883

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=89.26  E-value=0.18  Score=51.86  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999883

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=89.25  E-value=0.18  Score=50.26  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|+|+|.+||||||+.+.|.+
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=89.22  E-value=0.18  Score=53.38  Aligned_cols=22  Identities=27%  Similarity=0.304  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -++|+|+.|||||||++.+++-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999999883

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=89.07  E-value=0.2  Score=50.45  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|+|+|.+||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=89.06  E-value=0.22  Score=48.53  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|+|.+||||||+.++|..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=89.02  E-value=0.18  Score=53.01  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+++-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999883

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=89.02  E-value=0.25  Score=51.44  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -.++|+|+.|||||||++.+++-
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999884

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=88.93  E-value=0.28  Score=46.95  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..++|.|++|+|||+|+..+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=88.92  E-value=0.22  Score=49.64  Aligned_cols=23  Identities=30%  Similarity=0.358  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|+|.+||||||+...|.+
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            34799999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=88.91  E-value=0.24  Score=47.95  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .-|+|+|.+||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999873

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=88.89  E-value=0.19  Score=53.67  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+++-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999883

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=88.84  E-value=0.25  Score=48.17  Aligned_cols=23  Identities=22%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|+|.+||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=88.83  E-value=0.21  Score=52.36  Aligned_cols=22  Identities=27%  Similarity=0.300  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+++-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999884

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=88.83  E-value=0.78  Score=55.31  Aligned_cols=26  Identities=15%  Similarity=0.033  Sum_probs=22.8

Q ss_pred             CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        543 ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       543 AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      .++||.|++.+++++.|...|.+.+=
T Consensus       262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lP  287 (704)
T 2rdo_7          262 ILVTCGSAFKNKGVQAMLDAVIDYLP  287 (704)
T ss_pred             eEEEEeecccCccHHHHHHHHHHHCC
Confidence            56899999999999999999988763

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=88.78  E-value=0.2  Score=51.78  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999884

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=88.75  E-value=0.21  Score=49.72  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .-++|+|.+|||||||+++|++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45899999999999999999873

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.71  E-value=0.2  Score=52.17  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999883

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=88.70  E-value=0.21  Score=52.28  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999983

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=88.68  E-value=0.2  Score=53.13  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999999999999883

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=88.56  E-value=0.21  Score=52.99  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+++-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5799999999999999999883

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=88.50  E-value=0.37  Score=52.33  Aligned_cols=54  Identities=17%  Similarity=0.115  Sum_probs=37.3

Q ss_pred             CCcEEEEEeccccccCCChhHH-HHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHH
Q psy11649        506 PVPLILIGGKYDLFENLEPNKK-RIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL  563 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~-d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi  563 (890)
                      |+|.|||.||+|+...   +.. +.++.....| ...|-..+++|++++.+++.|+.++
T Consensus       117 ~~~~vivlnK~DL~~~---~~~~~~~~~~~~~y-~~~g~~v~~~sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          117 DIQPIICITKMDLIED---QDTEDTIQAYAEDY-RNIGYDVYLTSSKDQDSLADIIPHF  171 (307)
T ss_dssp             TCEEEEEEECGGGCCC---HHHHHHHHHHHHHH-HHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             CCCEEEEEECCccCch---hhhHHHHHHHHHHH-HhCCCeEEEEecCCCCCHHHHHhhc
Confidence            5788999999999842   221 2344443333 3457799999999988887766654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=88.50  E-value=0.22  Score=52.70  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999983

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=88.46  E-value=0.21  Score=52.42  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999883

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=88.41  E-value=0.27  Score=48.55  Aligned_cols=24  Identities=21%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .+.|+|.|.+||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999999873

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=88.38  E-value=0.22  Score=52.59  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999883

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=88.37  E-value=0.22  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .-|+|+|.+|||||||.+.|.+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999877

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=88.32  E-value=0.16  Score=51.94  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=15.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHH-cC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFL-EK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~-~~   58 (890)
                      .-++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999999 63

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=88.29  E-value=0.22  Score=52.62  Aligned_cols=21  Identities=29%  Similarity=0.537  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|+|+.|||||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            699999999999999999987

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=88.28  E-value=0.52  Score=51.80  Aligned_cols=59  Identities=15%  Similarity=0.076  Sum_probs=42.0

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHH-------cCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~-------yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      +|+|||+||+|+..   .+..+...+.++.....       .+..++.+|++.+.+++.|++.|...+.
T Consensus       218 ~p~ivVlNK~Dl~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~  283 (355)
T 3p32_A          218 LADIVVVNKADGEH---HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ  283 (355)
T ss_dssp             GCSEEEEECCCGGG---HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCcC---hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            58899999999862   22333333333333222       2688999999999999999999987764

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=88.22  E-value=0.29  Score=48.20  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|+|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999876

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=88.19  E-value=0.22  Score=52.89  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+++-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999883

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=88.19  E-value=0.24  Score=52.26  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|||||||++.+++-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999883

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=88.17  E-value=0.23  Score=53.90  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -.++|+|++|+|||||++.|.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            4699999999999999999987

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=88.17  E-value=0.28  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.|+|+|.+||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=88.08  E-value=0.31  Score=48.49  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|.|.+||||||+.+.|..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999976

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=87.97  E-value=0.18  Score=51.55  Aligned_cols=22  Identities=18%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999884

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=87.96  E-value=0.25  Score=52.72  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999883

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=87.91  E-value=0.26  Score=49.63  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|+|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999976

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=87.91  E-value=0.24  Score=52.11  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+.|+|||||++.+++-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	890
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	0.004

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 32 QSQERTLLLIGTKSVGKSTLVFRFLEK 58
          QS+ R + ++G +SVGKS+L  +F+E 
Sbjct: 1  QSKSRKIAILGYRSVGKSSLTIQFVEG 27

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	890
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.91
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.91
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.91
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.9
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.9
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.89
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.88
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.87
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.87
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.87
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.86
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.84
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.81
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.8
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.8
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.77
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.71
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.7
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.7
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.67
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.66
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.66
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.66
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.63
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.62
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.6
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.59
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.56
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.55
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.55
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.53
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.53
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.51
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.46
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.45
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.44
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.38
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.36
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.36
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.29
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.23
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.18
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.04
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	98.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	98.8
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.79
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.77
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.76
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.74
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	98.73
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.72
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	98.72
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.69
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.67
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.66
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.65
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.65
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.63
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.61
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.61
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.59
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.56
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.53
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.52
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.52
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.49
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.47
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.42
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.34
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.25
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.24
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.22
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.2
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.17
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.12
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.07
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.04
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.04
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	97.98
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.59
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.56
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.53
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.31
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.3
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.09
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.04
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.04
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.95
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.75
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.73
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.72
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.71
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.67
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.55
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.3
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.24
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.08
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.98
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.97
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	95.71
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.62
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.61
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.43
d1okkd2	207	GTPase domain of the signal recognition particle r	95.35
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.26
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.22
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.6
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.36
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.27
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	94.2
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.15
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.89
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.8
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	93.48
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.46
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.44
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.38
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.35
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.28
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.28
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.24
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.2
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.1
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.09
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.02
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	92.82
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	92.81
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.8
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	92.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.5
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.47
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	92.03
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.64
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	91.62
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.55
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	91.48
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	91.07
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.98
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	90.94
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	90.85
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	90.84
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.78
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.73
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	90.72
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	90.65
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	90.61
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	90.34
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	90.32
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	90.22
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	90.1
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	90.1
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	89.84
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	89.69
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	89.63
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	89.61
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	89.51
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	89.48
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	89.42
d2awna2	232	Maltose transport protein MalK, N-terminal domain	89.39
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	89.32
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	89.23
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	89.16
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	89.16
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	88.85
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	88.81
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	88.61
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	88.54
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	88.27
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	87.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	87.85
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	87.52
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	87.45
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	87.37
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	87.31
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	87.28
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	87.22
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	87.2
d1g2912	240	Maltose transport protein MalK, N-terminal domain	87.07
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	86.85
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	86.84
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	86.6
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	85.67
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	85.51
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	85.39
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	85.31
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	85.3
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	85.03
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	84.74
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	84.34
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	83.79
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	83.37
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	83.35
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	83.07
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	82.83
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	82.53
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	82.42
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	82.35
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	82.12
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	81.94
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	81.61
d1vmaa2	213	GTPase domain of the signal recognition particle r	81.59
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	81.56

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-24  Score=209.54  Aligned_cols=163  Identities=17%  Similarity=0.283  Sum_probs=128.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+|+|++|||||||+++|+++.  ..+.||++.++....... ......+++||++|+..+..+...+    ++  
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~----~~--   74 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHALGPIY----YR--   74 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC-------CCS----ST--
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeecc-CCccceeeeeccCCcceecccchhh----cc--
Confidence            36899999999999999999999864  467788887765433332 2223489999999999988888777    33  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++|+|||+++++|| +++..|++.+......                             ..|++|||||+|+.   
T Consensus        75 ~~~~~i~v~d~~~~~Sf-~~~~~~~~~~~~~~~~-----------------------------~~~~ilvgnK~Dl~---  121 (167)
T d1z08a1          75 DSNGAILVYDITDEDSF-QKVKNWVKELRKMLGN-----------------------------EICLCIVGNKIDLE---  121 (167)
T ss_dssp             TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHGG-----------------------------GSEEEEEEECGGGG---
T ss_pred             CCceeEEEEeCCchhHH-Hhhhhhhhhccccccc-----------------------------ccceeeeccccccc---
Confidence            59999999999999999 9999999876654432                             57999999999985   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                        ++|.+..++++++|+++++++++|||++|.||+++++.|.+.++.
T Consensus       122 --~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         122 --KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             --GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             --cccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence              367778889999999999999999999999999999999888753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.6e-24  Score=211.33  Aligned_cols=159  Identities=21%  Similarity=0.214  Sum_probs=117.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCC-CCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTPK-PTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~k-ptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      +||+|+|++|||||||+++|++...... ++.+..|  .+..........+++||++|++.+..+...+    ++  ++|
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~----~~--~~d   73 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY--DRSIVVDGEEASLMVYDIWEQDGGRWLPGHC----MA--MGD   73 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEE--EEEEEETTEEEEEEEEECC-------CHHHH----HT--SCS
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeee--cceeeccccccceeeeecccccccceecccc----hh--hhh
Confidence            6999999999999999999998754333 4444333  2222222223489999999999998888887    22  599


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++|+|||++++.++ +++..|+..+....                            ....+|+++||||+|+.     +
T Consensus        74 ~~ilv~d~t~~~s~-~~~~~~~~~i~~~~----------------------------~~~~~piilvgnK~Dl~-----~  119 (168)
T d2gjsa1          74 AYVIVYSVTDKGSF-EKASELRVQLRRAR----------------------------QTDDVPIILVGNKSDLV-----R  119 (168)
T ss_dssp             EEEEEEETTCHHHH-HHHHHHHHHHHHHC----------------------------C--CCCEEEEEECTTCG-----G
T ss_pred             hhceeccccccccc-cccccccchhhccc----------------------------ccccceEEEeecccchh-----h
Confidence            99999999999998 88899998776532                            12368999999999985     3


Q ss_pred             hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .+.+...+++.+|..+|+++++|||++|.|++++++.|.+.+
T Consensus       120 ~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            567778889999999999999999999999999999888765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.1e-24  Score=210.70  Aligned_cols=159  Identities=16%  Similarity=0.191  Sum_probs=131.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.||++.++....... ......+++||++|+.++..+...+    ++  +
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~----~~--~   74 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITKAY----YR--G   74 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCHHH----HT--T
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeee-cCceeeeeeeccCCccchhhhhhhh----hc--c
Confidence            4799999999999999999999863  567899998765333322 2223489999999999888777766    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||+++++++ +++..|++.+.+...                              ++|++|||||+|+.    
T Consensus        75 ~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~------------------------------~~~iilVgnK~Dl~----  119 (164)
T d1z2aa1          75 AQACVLVFSTTDRESF-EAISSWREKVVAEVG------------------------------DIPTALVQNKIDLL----  119 (164)
T ss_dssp             CCEEEEEEETTCHHHH-HTHHHHHHHHHHHHC------------------------------SCCEEEEEECGGGG----
T ss_pred             CceEEEEEeccchhhh-hhcccccccccccCC------------------------------CceEEEeeccCCcc----
Confidence            9999999999999998 889999988876532                              48999999999985    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       +++.+..++++++|+.+|+++++|||++|.|++++++.|.+.+
T Consensus       120 -~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         120 -DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             -GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             -cceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHH
Confidence             3667778889999999999999999999999999999987765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.1e-24  Score=208.98  Aligned_cols=162  Identities=19%  Similarity=0.241  Sum_probs=132.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      .+.+||+|+|++|||||||+++|+++.  ..+.||++.+|.  ...........+++||++|...+..+...+    ++ 
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~----~~-   74 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT--KLITVNGQEYHLQLVDTAGQDEYSIFPQTY----SI-   74 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE--EEEEETTEEEEEEEEECCCCCTTCCCCGGG----TS-
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc--eEEecCcEEEEeeecccccccccccccchh----hh-
Confidence            356899999999999999999999863  467789887764  222222223489999999999888777666    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++++| +.+..|++.+.+...                            ...+|++|||||+|+.  
T Consensus        75 -~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piilvgnK~Dl~--  122 (167)
T d1xtqa1          75 -DINGYILVYSVTSIKSF-EVIKVIHGKLLDMVG----------------------------KVQIPIMLVGNKKDLH--  122 (167)
T ss_dssp             -SCCEEEEEEETTCHHHH-HHHHHHHHHHHHHHC----------------------------SSCCCEEEEEECTTCG--
T ss_pred             -hhhhhhhhcccchhhhh-hhhhhhhhhhhhccc----------------------------ccccceeeeccccccc--
Confidence             59999999999999999 899999987766432                            2368999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .++.+..++++++|+++|+++++|||++|.|++++++.|...+
T Consensus       123 ---~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~  165 (167)
T d1xtqa1         123 ---MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA  165 (167)
T ss_dssp             ---GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ---cccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHh
Confidence               3566778889999999999999999999999999988776543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8e-24  Score=207.13  Aligned_cols=162  Identities=14%  Similarity=0.237  Sum_probs=132.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ++++||+|+|++|||||||++||+++.  .++.+|++..+...... .......+.|||++|++++..+...+    ++ 
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~----~~-   75 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ-YQNELHKFLIWDTAGLERFRALAPMY----YR-   75 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGGGGTHHH----HT-
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCccccccccccccccccc-ccccccceeeeecCCchhhhHHHHHH----Hh-
Confidence            578999999999999999999999864  46778888664322222 22223378999999999999888888    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++++| +++..|...+.+..                             ....|+++||||+|+.  
T Consensus        76 -~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilvgnK~Dl~--  122 (167)
T d1z0ja1          76 -GSAAAIIVYDITKEETF-STLKNWVRELRQHG-----------------------------PPSIVVAIAGNKCDLT--  122 (167)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTSEEEEEEECTTCG--
T ss_pred             -hccceEEEeeechhhhh-hhHHHhhhhhhhcc-----------------------------CCcceEEEecccchhc--
Confidence             49999999999999998 88998887665532                             2368999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         +++.+..++++++|+.+++++++|||++|.||++++..|.+.+
T Consensus       123 ---~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         123 ---DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             ---GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ---cccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence               4677888899999999999999999999999999999888765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.9e-24  Score=208.34  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=130.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+|+|++|||||||+++|+++.  +.+.||++..|....  ........+++||++|++.+..+...+    ++  +
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~--~~~~~~~~l~~~d~~g~~~~~~~~~~~----~~--~   73 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI--SCDKSICTLQITDTTGSHQFPAMQRLS----IS--K   73 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEE--EETTEEEEEEEEECCSCSSCHHHHHHH----HH--H
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccce--eeccccceecccccccccccccccccc----cc--c
Confidence            6899999999999999999999864  467789886654322  222222379999999999998888877    22  4


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||+++++++ +++..|...+.+....                           ..++|++|||||+|+.    
T Consensus        74 a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~---------------------------~~~~piilVgnK~Dl~----  121 (171)
T d2erxa1          74 GHAFILVYSITSRQSL-EELKPIYEQICEIKGD---------------------------VESIPIMLVGNKCDES----  121 (171)
T ss_dssp             CSEEEEEEETTCHHHH-HTTHHHHHHHHHHHC------------------------------CCCEEEEEECGGGG----
T ss_pred             eeEEEEEeecccccch-hcccchhhhhhhhhcc---------------------------CCCCcEEEEeeccccc----
Confidence            9999999999999998 8888998877654321                           1368999999999984    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       +.+.+..++++++|+.+++++++|||++|.|++++++.|.+.+
T Consensus       122 -~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         122 -PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             -GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             -ccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence             3667778889999999999999999999999999998888764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.91  E-value=7.9e-24  Score=208.00  Aligned_cols=162  Identities=19%  Similarity=0.239  Sum_probs=130.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .-+||+|+|++|||||||+++|+++.  ..+.||++.+|..  ..........+++||++|+..+..+...+    ++  
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~--~~~~~~~~~~l~i~d~~g~~~~~~~~~~~----~~--   74 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK--KVVLDGEEVQIDILDTAGQEDYAAIRDNY----FR--   74 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE--EEEETTEEEEEEEEECCC---CHHHHHHH----HH--
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccccc--ccccccccccccccccccccchhhhhhhc----cc--
Confidence            35799999999999999999999864  5778999877642  22222223489999999999998888877    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++|+|||++++.++ +++..|++.+.+...                            ..++|+++||||+|+.   
T Consensus        75 ~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~piiivgnK~Dl~---  122 (168)
T d1u8za_          75 SGEGFLCVFSITEMESF-AATADFREQILRVKE----------------------------DENVPFLLVGNKSDLE---  122 (168)
T ss_dssp             HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHC----------------------------CTTSCEEEEEECGGGG---
T ss_pred             ccceeEEEeeccchhhh-hhHHHHHHHHHHhhC----------------------------CCCCcEEEEecccccc---
Confidence            49999999999999998 889999988766432                            2368999999999984   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        +.+.+..++++++|+.+++.+++|||++|.|++++++.|.+.++
T Consensus       123 --~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         123 --DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             --GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             --ccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence              36777788999999999999999999999999999888876653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.9e-24  Score=205.36  Aligned_cols=160  Identities=19%  Similarity=0.272  Sum_probs=131.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++.  ..+.++++.++...... .......+++||++|++.+..+...+    +.  ++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~----~~--~~   73 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRTIRLQLWDTAGQERFRSLIPSY----IR--DS   73 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE-CSSCEEEEEEEEECCSGGGGGGHHHH----HT--TC
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeec-cCCCceeeeecccCCcchhccchHHH----hh--cc
Confidence            589999999999999999999864  46677877664432222 22223489999999999998888877    22  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|||++++.++ +++..|+..+......                             .+|++|||||+|+.     
T Consensus        74 ~~~ilv~d~~~~~s~-~~i~~~~~~~~~~~~~-----------------------------~~~iilvgnK~Dl~-----  118 (164)
T d1yzqa1          74 AAAVVVYDITNVNSF-QQTTKWIDDVRTERGS-----------------------------DVIIMLVGNKTDLA-----  118 (164)
T ss_dssp             SEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-----------------------------SSEEEEEEECTTCG-----
T ss_pred             ceEEEeeccccccch-hhhHhhHHHHHHhcCC-----------------------------CceEEEEecccchh-----
Confidence            999999999999998 8889998877654322                             68999999999984     


Q ss_pred             chhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        194 NKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       194 e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +.+....++++++|..+++.+++|||++|.|++++++.|...+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         119 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence            35667778899999999999999999999999999999998874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.4e-24  Score=206.37  Aligned_cols=162  Identities=19%  Similarity=0.282  Sum_probs=130.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ++++||+|+|++|||||||+++|+++.  .++.++++..|.  ...........+++||++|+..+..+...+    ++ 
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~----~~-   73 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYR--KEIEVDSSPSVLEILDTAGTEQFASMRDLY----IK-   73 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTCCHHHHHHH----HH-
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeee--eeeecCcceEeeccccCCCccccccchHHH----hh-
Confidence            468999999999999999999999864  466677773322  222222223489999999999998888887    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++++|||++++.+| +++..|...+.....                            ..++|++|||||+|+.  
T Consensus        74 -~a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piilvgnK~Dl~--  121 (167)
T d1kaoa_          74 -NGQGFILVYSLVNQQSF-QDIKPMRDQIIRVKR----------------------------YEKVPVILVGNKVDLE--  121 (167)
T ss_dssp             -HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHTT----------------------------TSCCCEEEEEECGGGG--
T ss_pred             -cccceeeeeeecchhhh-hhhhchhhhhhhhcc----------------------------CCCCCEEEEEEccchh--
Confidence             49999999999999999 888899886654321                            1368999999999985  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         +.+.....+++.+|+.+++++++|||++|.|++++++.|.+.+
T Consensus       122 ---~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         122 ---SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             ---GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred             ---hcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHH
Confidence               3566677889999999999999999999999999998887765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=206.70  Aligned_cols=160  Identities=23%  Similarity=0.201  Sum_probs=127.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++||+|||++|||||||+++|+++.  +++.||++.+|...  .........++|||++|+..+......++       +
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~--~~~~~~~~~l~i~D~~g~~~~~~~~~~~~-------~   72 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ--ATIDDEVVSMEILDTAGQEDTIQREGHMR-------W   72 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE--EEETTEEEEEEEEECCCCCCCHHHHHHHH-------H
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc--ccccccceEEEEeecccccccccchhhhc-------c
Confidence            6899999999999999999999864  57889999886532  22222234899999999987754333223       4


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||+++++++ +++..|...+.....                            ..++|+++||||+|+.    
T Consensus        73 ~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~----------------------------~~~~piilvgnK~Dl~----  119 (168)
T d2atva1          73 GEGFVLVYDITDRGSF-EEVLPLKNILDEIKK----------------------------PKNVTLILVGNKADLD----  119 (168)
T ss_dssp             CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT----------------------------TSCCCEEEEEECGGGG----
T ss_pred             cccceeecccCCccch-hhhhhhccccccccc----------------------------ccCcceeeeccchhhh----
Confidence            9999999999999998 888888765544321                            1258999999999984    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCC-CHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPG-LVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~-nId~Lk~~I~~~lf  237 (890)
                       ++|.+..++++++|+++++++++|||++|. ||++++..|.+.+.
T Consensus       120 -~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         120 -HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR  164 (168)
T ss_dssp             -GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             -hhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHH
Confidence             367778889999999999999999999998 69999888877663

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=206.13  Aligned_cols=163  Identities=15%  Similarity=0.236  Sum_probs=130.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.++.+..+.  ...........+++||++|+..+..+...+    ++ 
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~----~~-   76 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT--KICSVDGIPARLDILDTAGQEEFGAMREQY----MR-   76 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE--EEEEETTEEEEEEEEECCCTTTTSCCHHHH----HH-
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccccccee--eEeccCCeeeeeeccccccccccccccchh----hc-
Confidence            346899999999999999999999863  455566542222  222222223489999999999998888777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++.+| +.+..|+..+.+...                            ..++|++|||||+|+.  
T Consensus        77 -~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~p~ilvgnK~Dl~--  124 (173)
T d2fn4a1          77 -AGHGFLLVFAINDRQSF-NEVGKLFTQILRVKD----------------------------RDDFPVVLVGNKADLE--  124 (173)
T ss_dssp             -HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHHT----------------------------SSCCCEEEEEECGGGG--
T ss_pred             -cceeeeeeccccccccc-chhhhhhHHHHHHhc----------------------------cCCCceEEEEEeechh--
Confidence             49999999999999999 889999887765432                            1268999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                         +++.....+++.+|..+++++++|||++|.|++++++.|.+.+.
T Consensus       125 ---~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  168 (173)
T d2fn4a1         125 ---SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR  168 (173)
T ss_dssp             ---GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---hccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence               36667778899999999999999999999999999999988763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.7e-23  Score=205.82  Aligned_cols=162  Identities=18%  Similarity=0.270  Sum_probs=133.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      +.+||+++|++|||||||+++|+++  ...+.||++..|.  +..........+++||++|++.+..+...+    ++  
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~----~~--   74 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL--KHTEIDNQWAILDVLDTAGQEEFSAMREQY----MR--   74 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEE--EEEEETTEEEEEEEEECCSCGGGCSSHHHH----HH--
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccc--cccccccccccccccccccccccccchhhh----hh--
Confidence            4699999999999999999999986  3467788886653  222222223489999999999998888877    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|||+++++|| +++..|+..+.+...                            ..++|+++||||+|+.   
T Consensus        75 ~~~~~llv~d~~d~~Sf-~~~~~~~~~i~~~~~----------------------------~~~~p~ilvgnK~Dl~---  122 (169)
T d1x1ra1          75 TGDGFLIVYSVTDKASF-EHVDRFHQLILRVKD----------------------------RESFPMILVANKVDLM---  122 (169)
T ss_dssp             HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHT----------------------------SSCCCEEEEEECTTCS---
T ss_pred             hccEEEEecccccchhh-hccchhhHHHHhhcc----------------------------ccCccEEEEecccchh---
Confidence            49999999999999999 889999988766432                            2368999999999985   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCC-CHHHHHHHHHHHHh
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPG-LVKRTRDILNHYAF  237 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~-nId~Lk~~I~~~lf  237 (890)
                        +.+.+..++++++|+.+|+++++||||++. ||+++++.|.+.++
T Consensus       123 --~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         123 --HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             --TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             --hhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHH
Confidence              356777888999999999999999999875 99999999888764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=203.98  Aligned_cols=161  Identities=17%  Similarity=0.262  Sum_probs=133.1

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ++++||+|+|++|||||||+++|+++.  ..+.++++.+|.....  .......+++||++|+..+......+    ++ 
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~----~~-   73 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV--IDGETCLLDILDTAGQEEYSAMRDQY----MR-   73 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEE--ETTEEEEEEEEEECCCGGGHHHHHHH----HH-
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecccee--eeceeeeeeeeeccCccccccchhhh----hh-
Confidence            357999999999999999999999864  5667888877643322  22223489999999999998888777    12 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++++|||++++.+| +.+..|+..+.+....                            .++|+++||||+|+.  
T Consensus        74 -~~~~~iiv~d~~~~~s~-~~~~~~~~~i~~~~~~----------------------------~~~piilv~nK~Dl~--  121 (166)
T d1ctqa_          74 -TGEGFLCVFAINNTKSF-EDIHQYREQIKRVKDS----------------------------DDVPMVLVGNKCDLA--  121 (166)
T ss_dssp             -HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC----------------------------SSCCEEEEEECTTCS--
T ss_pred             -cccccceeecccccccH-HHHHHHHHHHHHhcCC----------------------------CCCeEEEEecccccc--
Confidence             49999999999999998 8899999887765422                            258999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          .+.+..++++++|+.+++++++|||++|.||++++..|.+.+
T Consensus       122 ----~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         122 ----ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             ----CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ----cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence                455667889999999999999999999999999999888766

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=204.10  Aligned_cols=161  Identities=20%  Similarity=0.237  Sum_probs=129.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  .++.++++.++....... ......+++||++|++.+..+...+    ++  +
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~~~~~----~~--~   76 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSY----YR--G   76 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHHHHHH----HH--T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEE-CCEEEEEEEeccCCchhHHHHHHHH----hc--C
Confidence            5899999999999999999999864  456677777654322221 1122389999999999999988888    22  4


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||+++.+++ +.+..|...+.+..                             ....|+++||||+|+.    
T Consensus        77 ~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilvgnK~Dl~----  122 (166)
T d1z0fa1          77 AAGALMVYDITRRSTY-NHLSSWLTDARNLT-----------------------------NPNTVIILIGNKADLE----  122 (166)
T ss_dssp             CSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCG----
T ss_pred             CcEEEEEeccCchHHH-HHHHHHHHHHHhhc-----------------------------cccceEEEEcccccch----
Confidence            9999999999999998 88888887665432                             2268999999999984    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       ..+....++++.+|+.+++++++|||++|.||+++++.|.+.+|
T Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         123 -AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY  166 (166)
T ss_dssp             -GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             -hhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence             35666677899999999999999999999999999988887764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-23  Score=204.25  Aligned_cols=161  Identities=19%  Similarity=0.229  Sum_probs=129.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.++++.++....... ......+++|||+|++.+..+...+    ++  +
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~~~~~~~~----~~--~   77 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSY----YR--S   77 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHGGG----ST--T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHH----Hh--c
Confidence            5899999999999999999999864  456677877754433322 1223479999999999999998888    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|++++.++ +++..|...+.+..                             ...+|++|||||+|+.    
T Consensus        78 ~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~-----------------------------~~~~~~ilvgnK~D~~----  123 (171)
T d2ew1a1          78 ANALILTYDITCEESF-RCLPEWLREIEQYA-----------------------------SNKVITVLVGNKIDLA----  123 (171)
T ss_dssp             CSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGG----
T ss_pred             cceEEEeeecccchhh-hhhhhhhhhhcccc-----------------------------cccccEEEEEeecccc----
Confidence            9999999999999998 88888887665432                             2268999999999985    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       +++.+..++++.++..+|+++++|||++|.||++++..|.+.+.
T Consensus       124 -~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~  167 (171)
T d2ew1a1         124 -ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI  167 (171)
T ss_dssp             -GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -cccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHH
Confidence             35667778899999999999999999999999999877766553

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.9e-23  Score=203.72  Aligned_cols=161  Identities=18%  Similarity=0.290  Sum_probs=129.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.++.+.++....... ......+++||+||++.+..+...+    ++  +
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~wDt~G~e~~~~~~~~~----~~--~   77 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYR-NDKRIKLQIWDTAGQERYRTITTAY----YR--G   77 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTT----TT--T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEe-ecceEEEEEEECCCchhhHHHHHHH----Hh--c
Confidence            5899999999999999999999864  466678887754322222 2222389999999999999888887    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||+++++++ ..+..|.+.+....                             ....|+++||||+|+.    
T Consensus        78 ad~~ilv~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iivv~nK~D~~----  123 (169)
T d3raba_          78 AMGFILMYDITNEESF-NAVQDWSTQIKTYS-----------------------------WDNAQVLLVGNKCDME----  123 (169)
T ss_dssp             CCEEEEEEETTCHHHH-HTHHHHHHHHHHHC-----------------------------CSCCEEEEEEECTTCG----
T ss_pred             CCEEEEEEECccchhh-hhhhhhhhhhhccc-----------------------------CCcceEEEEEeecccc----
Confidence            9999999999999998 77777776554321                             2258999999999984    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       +++.+..++++.+|+.+|+++++|||++|.|++++++.|.+.++
T Consensus       124 -~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         124 -DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             -GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -cccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHh
Confidence             35666778899999999999999999999999999999988774

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-23  Score=201.75  Aligned_cols=162  Identities=19%  Similarity=0.270  Sum_probs=131.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ++++||+|||++|||||||+++|+++.  +.+.|+++..|.  ...........+++||++|+..+..+...+    ++ 
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~-   73 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR--KQVEVDCQQCMLEILDTAGTEQFTAMRDLY----MK-   73 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE--EEEESSSCEEEEEEEEECSSCSSTTHHHHH----HH-
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccc--eeEEeeeeEEEeccccccCccccccccccc----cc-
Confidence            467899999999999999999999864  467788886543  222223333489999999999999888888    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++.|| +++..|++.+.+...                            ...+|++|||||+|+.  
T Consensus        74 -~~~~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~----------------------------~~~~p~ilvgnK~Dl~--  121 (167)
T d1c1ya_          74 -NGQGFALVYSITAQSTF-NDLQDLREQILRVKD----------------------------TEDVPMILVGNKCDLE--  121 (167)
T ss_dssp             -HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHC----------------------------CSCCCEEEEEECTTCG--
T ss_pred             -ccceeEEeeeccchhhh-HhHHHHHHHHHHhcC----------------------------CCCCeEEEEEEecCcc--
Confidence             49999999999999999 999999987765421                            1258999999999985  


Q ss_pred             CCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         +++....++...+++++ ++++++|||++|.|++++++.|.+.+
T Consensus       122 ---~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         122 ---DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             ---GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ---cccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHh
Confidence               35566667788888875 78999999999999999999888765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.5e-23  Score=202.51  Aligned_cols=163  Identities=18%  Similarity=0.217  Sum_probs=127.9

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  .++.||.+..+.  ...........+++||++|...+..+...+    ++ 
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~-   75 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT--KQCVIDDRAARLDILDTAGQEEFGAMREQY----MR-   75 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEE--EEEEETTEEEEEEEEECC----CCHHHHHH----HH-
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCccccccee--eeeeeccccccccccccccccccccccccc----cc-
Confidence            446899999999999999999999864  566788774332  222222223489999999999988888777    12 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++++|||++++.|+ +.+..|...+.+....                            ..+|++|||||+|+.  
T Consensus        76 -~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~----------------------------~~~p~ilvgnK~Dl~--  123 (171)
T d2erya1          76 -TGEGFLLVFSVTDRGSF-EEIYKFQRQILRVKDR----------------------------DEFPMILIGNKADLD--  123 (171)
T ss_dssp             -HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTS----------------------------SCCSEEEEEECTTCT--
T ss_pred             -ccceEEEeeccccccch-hhHHHHhHHHHhhccc----------------------------CCCCEEEEEeccchh--
Confidence             49999999999999998 8899998876654321                            258999999999984  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                         +.+.+..++++++|+.+++++++|||++|.||+++++.|.+.+.
T Consensus       124 ---~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         124 ---HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR  167 (171)
T ss_dssp             ---TSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ---hhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHH
Confidence               35667788899999999999999999999999999999988763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.5e-24  Score=210.16  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=125.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++  ...+.||++++|..... ........+.+||++|+..+..+...+    ++  +
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~-~~~~~~~~l~i~D~~g~~~~~~~~~~~----~~--~   75 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF-HTNRGPIKFNVWDTAGQEKFGGLRDGY----YI--Q   75 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEE-CBTTCCEEEEEEECTTHHHHSSCGGGG----TT--T
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccc-ccccccccccccccccccccceecchh----cc--c
Confidence            579999999999999999999986  45677899988643222 222223489999999999888888777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||+++++|| +++..|+..+.+...                              .+|+++||||+|+...  
T Consensus        76 ~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~~------------------------------~~piilvgnK~Dl~~~--  122 (170)
T d1i2ma_          76 AQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCE------------------------------NIPIVLCGNKVDIKDR--  122 (170)
T ss_dssp             CCEEEEEEETTSGGGG-TTHHHHHHHHHHHHC------------------------------SCCEEEEEECCCCSCS--
T ss_pred             ccchhhcccccccccc-chhHHHHHHHhhccC------------------------------CCceeeecchhhhhhh--
Confidence            9999999999999999 889999987765432                              4899999999998532  


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                         +  ...+...++..+++++++|||++|.|++++++.|...++.
T Consensus       123 ---~--~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         123 ---K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             ---C--CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             ---h--hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence               1  1123456788899999999999999999999999887754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.5e-23  Score=202.51  Aligned_cols=167  Identities=17%  Similarity=0.286  Sum_probs=121.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      -+||+|+|++|||||||+++|+++.  ..+.++.+..+..............+.+||++|++.+..+...+    ++  .
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~--~   75 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAF----YR--G   75 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CC----ST--T
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHH----hh--c
Confidence            3799999999999999999999864  45667777665443333232223378999999998888877777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|||++++.+| +.+..|++.+.+....                         .....+|++|||||+|+.+   
T Consensus        76 ~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------------~~~~~~piilv~nK~Dl~~---  126 (175)
T d1ky3a_          76 ADCCVLVYDVTNASSF-ENIKSWRDEFLVHANV-------------------------NSPETFPFVILGNKIDAEE---  126 (175)
T ss_dssp             CCEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------------SCTTTCCEEEEEECTTSCG---
T ss_pred             cceEEEEeeccccccc-chhhhcchhhhhhhhh-------------------------cccccCcEEEEecccchhh---
Confidence            9999999999999998 8899999988776543                         2234689999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       +.+.+...+++++|..++ +++++|||++|.|++++++.|.+.++
T Consensus       127 -~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l  171 (175)
T d1ky3a_         127 -SKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL  171 (175)
T ss_dssp             -GGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -hhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Confidence             234456778899999986 78999999999999999998887764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.3e-23  Score=200.53  Aligned_cols=162  Identities=19%  Similarity=0.233  Sum_probs=130.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++  ...+.++.+..+....... ......+++||++|++++..+...+    +  .+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~----~--~~   77 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSVTRSY----Y--RG   77 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHHHHTT----S--TT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEe-cCcceeEEEEECCCchhhhhhHHHH----h--hh
Confidence            489999999999999999999976  3466677776643222221 2223389999999999999998888    2  25


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||+++++++ .++..|...+....                             ..++|+++||||+|+.    
T Consensus        78 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~piivv~nK~D~~----  123 (174)
T d2bmea1          78 AAGALLVYDITSRETY-NALTNWLTDARMLA-----------------------------SQNIVIILCGNKKDLD----  123 (174)
T ss_dssp             CSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGG----
T ss_pred             CCEEEEEEecccchhH-HHHhhhhccccccc-----------------------------CCceEEEEEEeccccc----
Confidence            9999999999999998 88888888765532                             2268999999999984    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       .++....+..+++++.+++++++|||++|.|++++++.+.+.++.
T Consensus       124 -~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~  168 (174)
T d2bmea1         124 -ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN  168 (174)
T ss_dssp             -GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -chhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHH
Confidence             356677788899999999999999999999999999988887753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.2e-23  Score=204.63  Aligned_cols=167  Identities=17%  Similarity=0.182  Sum_probs=128.0

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      ....+||+|+|++|||||||+++|+++.  ..+.||++..+ . +..........+++||++|++.+..+...+    ++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~-~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~----~~   79 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-A-VSVTVGGKQYLLGLYDTAGQEDYDRLRPLS----YP   79 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-E-EEEESSSCEEEEEEECCCCSSSSTTTGGGG----CT
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeee-e-EEEeeCCceEEeecccccccchhhhhhhhc----cc
Confidence            4567899999999999999999999863  56778887432 2 222222223489999999999998888877    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++++|||+++++||.+....|.+.++...                              ..+|+++||||+|+..
T Consensus        80 --~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~------------------------------~~~~~ilvgnK~Dl~~  127 (185)
T d2atxa1          80 --MTDVFLICFSVVNPASFQNVKEEWVPELKEYA------------------------------PNVPFLLIGTQIDLRD  127 (185)
T ss_dssp             --TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS------------------------------TTCCEEEEEECTTSTT
T ss_pred             --ccceeeeccccchHHHHHHHHHHHHHHHHhcC------------------------------CCCCeeEeeecccccc
Confidence              59999999999999999333455665554432                              1589999999999864


Q ss_pred             CC-------CcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        190 NL-------EPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       190 d~-------d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +.       +..+|.+..++++++|+++| +.|++|||++|.||+++++.+...+
T Consensus       128 ~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         128 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             CHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             chhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence            21       12245677888999999998 6899999999999999988887665

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.5e-23  Score=200.30  Aligned_cols=163  Identities=18%  Similarity=0.258  Sum_probs=132.0

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      +...+||+|||++|||||||+++|+++.  ..+.++.+.++....... ......+.+||++|++.+..+...+    ++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~----~~   77 (170)
T d1r2qa_           3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSLAPMY----YR   77 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHH----HT
T ss_pred             ceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeec-cceEEEEEeccCCCchhhhhhHHHH----hh
Confidence            3457899999999999999999999764  466688886654322222 2223389999999999998888887    22


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                        +++++|+|||++++.++ +++..|...+.+...                             .++|++|||||+|+. 
T Consensus        78 --~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~-----------------------------~~~~iilvgnK~Dl~-  124 (170)
T d1r2qa_          78 --GAQAAIVVYDITNEESF-ARAKNWVKELQRQAS-----------------------------PNIVIALSGNKADLA-  124 (170)
T ss_dssp             --TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC-----------------------------TTCEEEEEEECGGGG-
T ss_pred             --CcceEEEEeccchhhHH-HHHHHHhhhhhhccC-----------------------------CCceEEeeccccccc-
Confidence              59999999999999998 788888876654322                             268999999999984 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          +++.+..+.++.++..+++++++|||++|.||+++++.|.+.+
T Consensus       125 ----~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         125 ----NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             ----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             ----ccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence                3677778889999999999999999999999999999988765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.1e-23  Score=201.37  Aligned_cols=164  Identities=17%  Similarity=0.231  Sum_probs=124.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.||++..+.  ...........++|||++|++.+..+...+    ++  +
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~----~~--~   73 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYV--ADIEVDGKQVELALWDTAGLEDYDRLRPLS----YP--D   73 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGTTTGGGG----CT--T
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecc--ccccccccceeeeccccCccchhcccchhh----cc--c
Confidence            4699999999999999999999864  466788774332  222222223489999999999998888887    33  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHH-HHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAET-FLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~-wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++++|+|||+++++|| +++.. |...+... .                             .++|++|||||+|+..+.
T Consensus        74 ~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~-~-----------------------------~~~piilvgnK~Dl~~~~  122 (177)
T d1kmqa_          74 TDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-C-----------------------------PNVPIILVGNKKDLRNDE  122 (177)
T ss_dssp             CSEEEEEEETTCHHHH-HHHHHTHHHHHHHH-S-----------------------------TTSCEEEEEECGGGTTCH
T ss_pred             chhhhhhcccchhHHH-HHHHHHHHHHHHHh-C-----------------------------CCCceEEeeecccccchh
Confidence            9999999999999998 55555 44433322 1                             258999999999986321


Q ss_pred             C-------cchhhhhHHHHHHHHHHcCC-eEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        192 E-------PNKKRIAVQCLRYLAHVNGA-SLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       192 d-------~e~r~~i~~~lr~la~~~Ga-~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .       ...+.+..++++.+|+.+|+ ++++|||++|.||+++++.+.+.++
T Consensus       123 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             HHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            0       01234567788999999985 7999999999999999999887764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-22  Score=197.77  Aligned_cols=167  Identities=15%  Similarity=0.220  Sum_probs=129.5

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      +...+||+|+|++|||||||+++|+++.  ..+.+|++..+....... ......+++||++|..........+      
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~------   75 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSLRTPF------   75 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHHHGGG------
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeee-cCceeeEeeecccCcceehhhhhhh------
Confidence            4457899999999999999999999864  456677776653322221 2222388999999998877776666      


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                      ...++++++|+|++++.++ +.+..|+..+.+....                         ....++|++|||||+|+. 
T Consensus        76 ~~~~~~~i~~~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------------~~~~~~piilVgnK~Dl~-  128 (174)
T d1wmsa_          76 YRGSDCCLLTFSVDDSQSF-QNLSNWKKEFIYYADV-------------------------KEPESFPFVILGNKIDIS-  128 (174)
T ss_dssp             GTTCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC-------------------------SCTTTSCEEEEEECTTCS-
T ss_pred             hhccceEEEEEeeeccccc-chhhhHHHHHHHHhcc-------------------------ccCCCceEEEeccccchh-
Confidence            2259999999999999998 8889999888765433                         233468999999999984 


Q ss_pred             CCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           ++.+..+++++++++++ +++++|||++|.||+++++.+.+.+.
T Consensus       129 -----~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         129 -----ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             -----SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -----hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHh
Confidence                 46677888999999875 78999999999999999988887764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.7e-22  Score=197.98  Aligned_cols=163  Identities=17%  Similarity=0.306  Sum_probs=130.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.||++.+|....... ......++|||++|++.+..+...+    +.  +
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~d~~g~~~~~~~~~~~----~~--~   75 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASLAPMY----YR--N   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGGHHHH----HT--T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeecccccc-ccccccccccccCCchhHHHHHHHH----Hh--c
Confidence            5799999999999999999999864  567788888765333222 2223489999999999988888777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++.++ +++..|...+....                             ....|+++|+||+|+.++. 
T Consensus        76 ~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~~~~v~nk~d~~~~~-  124 (170)
T d1ek0a_          76 AQAALVVYDVTKPQSF-IKARHWVKELHEQA-----------------------------SKDIIIALVGNKIDMLQEG-  124 (170)
T ss_dssp             CSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECGGGGGSS-
T ss_pred             cceEEEEEeCCcccch-hhhhhhhhhhcccc-----------------------------ccccceeeeeccccccccc-
Confidence            9999999999999998 88888887554432                             2257999999999986432 


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                       ..+.+..++++++|+.+++++++|||++|.|++++++.|...+
T Consensus       125 -~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         125 -GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             -CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             -chhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence             2567778889999999999999999999999999988776543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-22  Score=199.66  Aligned_cols=167  Identities=19%  Similarity=0.178  Sum_probs=126.2

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC--CCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK--NDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLT  109 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~--~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~  109 (890)
                      .++++||+|+|++|||||||+++|+++  ...+.||++..+.  ...........+++||++|++.+..+...+    ++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~   75 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS--ANVMVDGKPVNLGLWDTAGQEDYDRLRPLS----YP   75 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE--EEEEETTEEEEEEEECCCCSGGGTTTGGGG----CT
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeecee--eeeeccCcceEEEeecccccccchhhhhhc----cc
Confidence            467899999999999999999999986  4577788874432  222222223489999999999998888777    33


Q ss_pred             cccCcEEEEEEeCCCcCchHHHHHH-HHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        110 AQSGFTLVLMLDLSRLNSLWTEAET-FLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       110 ~~~ad~IIIV~DlSnp~S~~~~L~~-wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                        +++++|+|||++++++| +++.. |...++...                              .++|++|||||+|+.
T Consensus        76 --~~~~~ilv~d~~~~~sf-~~i~~~~~~~~~~~~------------------------------~~~piilvgnK~Dl~  122 (183)
T d1mh1a_          76 --QTDVSLICFSLVSPASF-ENVRAKWYPEVRHHC------------------------------PNTPIILVGTKLDLR  122 (183)
T ss_dssp             --TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHS------------------------------TTSCEEEEEECHHHH
T ss_pred             --ccceeeeeeccchHHHH-HHHHHHHHHHHHHhC------------------------------CCCcEEEEeecccch
Confidence              59999999999999999 77765 555444321                              158999999999985


Q ss_pred             CCC-------CcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        189 ENL-------EPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       189 ~d~-------d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      .+-       ....+.....+...+|+.++ +.|++|||++|.||+++++.|.+.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             hhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            310       00112234567888999887 78999999999999999998887764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=199.88  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=125.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.++.+.++....... ......+.+||++|+..+..+...+    ++  +
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~~~----~~--~   75 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSITRSY----YR--G   75 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCCCHHH----HT--T
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeee-eeeEEEEEeecccCccchhhHHHHH----hh--c
Confidence            4799999999999999999999864  455566665543322222 2223489999999999988887777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      +|++|+|||++++.+| +.+..|++.+.+...                             .++|++|||||+|+.    
T Consensus        76 ~d~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~-----------------------------~~~piilv~nK~D~~----  121 (173)
T d2a5ja1          76 AAGALLVYDITRRETF-NHLTSWLEDARQHSS-----------------------------SNMVIMLIGNKSDLE----  121 (173)
T ss_dssp             CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCG----
T ss_pred             cCEEEEEEeecChHHH-HhHHHHHHHHHHhCC-----------------------------CCCeEEEEecCCchh----
Confidence            9999999999999999 888888887655322                             268999999999984    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                       ..+....++++.+|..+++++++|||++|.|+++++..|.+.++
T Consensus       122 -~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~  165 (173)
T d2a5ja1         122 -SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY  165 (173)
T ss_dssp             -GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             -hhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence             35566778899999999999999999999999999888877764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=200.49  Aligned_cols=168  Identities=15%  Similarity=0.120  Sum_probs=127.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      |+.+||+|+|++|||||||+++|+++.  .++.||++..+..  ..........+++||++|++++..+...+    ++ 
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~--~~~~~~~~~~l~i~D~~g~~~~~~~~~~~----~~-   73 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV--TVMIGGEPYTLGLFDTAGQEDYDRLRPLS----YP-   73 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGTTTGGGG----CT-
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecce--eEeeCCceeeeeccccccchhhhhhhhhc----cc-
Confidence            346899999999999999999999864  5677888854322  22222223389999999999998888887    33 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++++|||+++++|| +++..|.........                             .++|+++||||+|+..+
T Consensus        74 -~~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~~-----------------------------~~~~i~lvgnK~Dl~~~  122 (191)
T d2ngra_          74 -QTDVFLVCFSVVSPSSF-ENVKEKWVPEITHHC-----------------------------PKTPFLLVGTQIDLRDD  122 (191)
T ss_dssp             -TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC-----------------------------TTCCEEEEEECGGGGGC
T ss_pred             -ccceeecccccchHHHH-HHHHHHHHHHHhhcC-----------------------------CCCceEEEecccccccc
Confidence             59999999999999999 777654443332211                             25899999999998532


Q ss_pred             C-------CcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        191 L-------EPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       191 ~-------d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      .       ...++.+..++++++|..+ ++.+++|||++|.||+++++.+...+..
T Consensus       123 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             HHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             chhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence            1       0123446778899999986 4789999999999999998888777643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-22  Score=198.26  Aligned_cols=162  Identities=20%  Similarity=0.298  Sum_probs=126.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      .+||+|||++|||||||+++|+++.  ..+.++.+.+........ ......+++||++|++.+..+...+    ++  +
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~~~~----~~--~   76 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRITSAY----YR--G   76 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCCHHH----HT--T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHHHHH----hh--c
Confidence            5799999999999999999999864  455566665543323222 2222389999999999888877776    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||+++++|| +.+..|++.+.+...                             .++|++|||||+|+.    
T Consensus        77 ~~~~i~v~d~~~~~S~-~~~~~~~~~i~~~~~-----------------------------~~~piilvgnK~Dl~----  122 (175)
T d2f9la1          77 AVGALLVYDIAKHLTY-ENVERWLKELRDHAD-----------------------------SNIVIMLVGNKSDLR----  122 (175)
T ss_dssp             CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-----------------------------TTCEEEEEEECTTCG----
T ss_pred             cCeEEEEEECCCcccc-hhHHHHHHHHHHhcC-----------------------------CCCcEEEEEeeeccc----
Confidence            9999999999999998 888888887766432                             268999999999985    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       +++....+..+.++..+++++++|||++|.|++++++.+...++.
T Consensus       123 -~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         123 -HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             -GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -ccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence             345556677788889999999999999999999998887776653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=201.82  Aligned_cols=163  Identities=20%  Similarity=0.324  Sum_probs=129.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEec---------cccceEEEEEEcCCCcchhhHHhhh
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGK---------TVMKDICHLWELGSGTSRLEVASLF  103 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~---------~~~k~~l~IwDlpG~~~~~~Li~~~  103 (890)
                      .+||+|+|++|||||||+++|+++.  ..+.++.+.+|........         ......+.+||++|++.+..+...+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            5899999999999999999999863  4556677766544333211         0112379999999999999998888


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                          ++  +++++|+|||+++++++ +.+..|+..+...                            .....+|++||||
T Consensus        85 ----~~--~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~----------------------------~~~~~~~iilv~n  129 (186)
T d2f7sa1          85 ----FR--DAMGFLLMFDLTSQQSF-LNVRNWMSQLQAN----------------------------AYCENPDIVLIGN  129 (186)
T ss_dssp             ----HT--TCCEEEEEEETTCHHHH-HHHHHHHHTCCCC----------------------------CTTTCCEEEEEEE
T ss_pred             ----Hh--cCCEEEEEEeccccccc-eeeeeccchhhhh----------------------------ccCCCceEEEEee
Confidence                22  59999999999999998 7788887633211                            1223589999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      |+|+.     +++.+..++++++|+.+|+++++|||++|.|++++++.|.+.+.
T Consensus       130 K~Dl~-----~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         130 KADLP-----DQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM  178 (186)
T ss_dssp             CTTCG-----GGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             eccch-----hhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99994     46778888999999999999999999999999999999988774

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.5e-22  Score=194.43  Aligned_cols=161  Identities=18%  Similarity=0.248  Sum_probs=120.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ..+||+|+|++|||||||+++|+++.   ..+.++++.++........ .....++||||+|++++..+...+    ++ 
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~e~~~~~~~~~----~~-   78 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-GVKVKLQMWDTAGQERFRSVTHAY----YR-   78 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-TEEEEEEEEECCCC--------CC----GG-
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEec-CcEEEEEEEECCCchhhHHHHHHh----hc-
Confidence            35899999999999999999998864   3445666766532222221 222489999999999998888777    22 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       ++|++++|||++++.++ ..+..|...+.+..                             ....|+++|+||+|+.. 
T Consensus        79 -~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilv~~k~d~~~-  126 (170)
T d2g6ba1          79 -DAHALLLLYDVTNKASF-DNIQAWLTEIHEYA-----------------------------QHDVALMLLGNKVDSAH-  126 (170)
T ss_dssp             -GCSEEEEEEETTCHHHH-HTHHHHHHHHHHHS-----------------------------CTTCEEEEEEECCSTTS-
T ss_pred             -CCceeEEEecCCcccch-hhhhhhhhhhhhcc-----------------------------CCCceEEEEEeeechhh-
Confidence             59999999999999998 77777776554432                             23689999999999853 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                          ++.+..++++.+++.+++++++|||++|.|++++++.|...+
T Consensus       127 ----~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         127 ----ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             ----CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ----cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHc
Confidence                556667889999999999999999999999999999887765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.9e-22  Score=193.60  Aligned_cols=161  Identities=20%  Similarity=0.186  Sum_probs=120.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhcccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSLTA  110 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~  110 (890)
                      -+||+|+|++|||||||+++|++..   ....++++.++.-.. .........+.+||+++....+. +...+    ++ 
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~d~~~~~g~e~~~~~~~----~~-   76 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERT-LMVDGESATIILLDMWENKGENEWLHDHC----MQ-   76 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEE-EEETTEEEEEEEECCTTTTHHHHHHHHCC----CC-
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceee-eccCCceeeeeeecccccccccccccccc----cc-
Confidence            5899999999999999999999853   234466776643222 22222233788999876543322 23333    33 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       +++++|+|||++++.++ +++..|...+....                            ....+|++|||||+|+.  
T Consensus        77 -~~~~~ilvfd~t~~~s~-~~~~~~~~~i~~~~----------------------------~~~~~piilvgnK~Dl~--  124 (172)
T d2g3ya1          77 -VGDAYLIVYSITDRASF-EKASELRIQLRRAR----------------------------QTEDIPIILVGNKSDLV--  124 (172)
T ss_dssp             -CCSEEEEEEETTCHHHH-HHHHHHHHHHHTSG----------------------------GGTTSCEEEEEECTTCG--
T ss_pred             -ccceeeeeecccccchh-hhhhhhhhhhhhcc----------------------------ccCCceEEEEecccccc--
Confidence             69999999999999998 88888887654321                            12368999999999985  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         +++++..++++++|..+++++++|||++|.|++++++.|.+.+
T Consensus       125 ---~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i  167 (172)
T d2g3ya1         125 ---RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV  167 (172)
T ss_dssp             ---GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             ---ccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence               3667778889999999999999999999999999999988776

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=4.5e-22  Score=197.58  Aligned_cols=164  Identities=15%  Similarity=0.265  Sum_probs=128.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +||+|+|++|||||||+++|+++.  ..+.||++.++....... ......+++||++|...+......+    +  .++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~----~--~~~   75 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSLGVAF----Y--RGA   75 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCSCCGG----G--TTC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeee-CCceEEEEeeecCCccccccccccc----c--cCc
Confidence            699999999999999999999864  467788887765433322 2223489999999988776666655    2  259


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEP  193 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~  193 (890)
                      +++++|+|++++.++ +.+..|+..+......                         .....+|+++||||+|+.     
T Consensus        76 ~~~i~~~d~~~~~~~-~~~~~~~~~i~~~~~~-------------------------~~~~~ip~ilv~nK~Dl~-----  124 (184)
T d1vg8a_          76 DCCVLVFDVTAPNTF-KTLDSWRDEFLIQASP-------------------------RDPENFPFVVLGNKIDLE-----  124 (184)
T ss_dssp             SEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------------SSGGGSCEEEEEECTTSS-----
T ss_pred             cEEEEeecccchhhh-hcchhhHHHHHHHhcc-------------------------ccccCCCEEEEEEeeccc-----
Confidence            999999999999998 8899999888776543                         222358999999999984     


Q ss_pred             chhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        194 NKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       194 e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       ++....++...++.. +++++++|||++|.||+++++.+.+.++.
T Consensus       125 -~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~  169 (184)
T d1vg8a_         125 -NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK  169 (184)
T ss_dssp             -CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -ccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence             344556666677654 57899999999999999999998887755

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.1e-21  Score=196.83  Aligned_cols=164  Identities=21%  Similarity=0.286  Sum_probs=131.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      ..+||+|+|++|||||||+++|+++.  ..+.+|++..+....... ......++|||++|++++..++..+    ++  
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~e~~~~~~~~~----~~--   77 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTITSSY----YR--   77 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCCCGGG----GT--
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEE-eeEEEEEEEEECCCchhhHHHHHHH----hc--
Confidence            46899999999999999999999863  566788887754333322 1223489999999999998888777    23  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++|+|||+++++++ ..+..|...+.+..                             ...+|++|||||+|+.   
T Consensus        78 ~a~~~i~v~d~t~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilv~nK~D~~---  124 (194)
T d2bcgy1          78 GSHGIIIVYDVTDQESF-NGVKMWLQEIDRYA-----------------------------TSTVLKLLVGNKCDLK---  124 (194)
T ss_dssp             TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEECTTCT---
T ss_pred             cCCEEEEEEeCcchhhh-hhHhhhhhhhhhcc-----------------------------cCCceEEEEEeccccc---
Confidence            59999999999999998 67777776665432                             2368999999999985   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                        +.+....++.+.++...++.+++|||++|.|++++++.|.+.++..
T Consensus       125 --~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         125 --DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             --TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             --cccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHH
Confidence              3566677888999999999999999999999999999998887653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=3.4e-22  Score=196.75  Aligned_cols=161  Identities=18%  Similarity=0.252  Sum_probs=104.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      -+||+|+|++|||||||+++|+++.  ..+.+|++.++........ .....+++||+||++.+..+...+    ++  +
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~e~~~~~~~~~----~~--~   78 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAY----YR--G   78 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-TEEEEEEEEEC---------CCTT----TT--T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHh----cc--C
Confidence            5899999999999999999999864  4566778777654333321 123489999999999988888777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++.++ +.+..|.+.+....                             ...+|+++|+||+|+..   
T Consensus        79 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-----------------------------~~~~~iilv~~k~D~~~---  125 (173)
T d2fu5c1          79 AMGIMLVYDITNEKSF-DNIRNWIRNIEEHA-----------------------------SADVEKMILGNKCDVND---  125 (173)
T ss_dssp             CSEEEEEEETTCHHHH-HHHHHHHHHHHHHS-----------------------------CTTCEEEEEEEC--CCS---
T ss_pred             CCEEEEEEECCChhhH-HHHHHHHHHhhhhc-----------------------------cCCceEEEEEecccchh---
Confidence            9999999999999998 78888887765432                             22589999999999852   


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+....+++..++..+++++++|||++|.||+++++.|.+.+.
T Consensus       126 --~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         126 --KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK  168 (173)
T ss_dssp             --CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred             --hcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence              4455567788999999999999999999999999998887763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.6e-21  Score=189.50  Aligned_cols=157  Identities=18%  Similarity=0.315  Sum_probs=121.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQ  111 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~  111 (890)
                      -+||+|+|++|||||||+++|+++.  ..+.++.+..+...... .......+.+||++|...... ....+    ++  
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--   74 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVD-IDGERIKIQLWDTAGQERFRKSMVQHY----YR--   74 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEE-ETTEEEEEEEEECCCSHHHHTTTHHHH----HT--
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeee-eeccceEEEEEeccCchhhccccceee----ec--
Confidence            5799999999999999999999863  46667777665432222 222233899999999876543 34444    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||++++++| +++..|+..+.+...                            ..++|++|||||+|+.   
T Consensus        75 ~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~----------------------------~~~~pi~lvgnK~Dl~---  122 (165)
T d1z06a1          75 NVHAVVFVYDMTNMASF-HSLPAWIEECKQHLL----------------------------ANDIPRILVGNKCDLR---  122 (165)
T ss_dssp             TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHCC----------------------------CSCCCEEEEEECTTCG---
T ss_pred             CCCceEEEEEeehhhhh-hhhhhhhHHHHhhcc----------------------------CCCCeEEEEeccccch---
Confidence            59999999999999999 888899987765421                            2368999999999985   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCC---CHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPG---LVKRTRDIL  232 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~---nId~Lk~~I  232 (890)
                        +++++..++++++|+.+++++++||||++.   ||+++++.|
T Consensus       123 --~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         123 --SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             --GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             --hccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHh
Confidence              366778888999999999999999999754   787776654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=8.4e-22  Score=192.16  Aligned_cols=160  Identities=18%  Similarity=0.266  Sum_probs=124.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      -+||+++|++|||||||+++|+++.  ..+.||++.++....... ......+.+||+||++.+..+...+    ++  +
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~~~i~Dt~G~~~~~~~~~~~----~~--~   74 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTITTAY----YR--G   74 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCCCHHH----HT--T
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhHHHHHHH----Hh--c
Confidence            4799999999999999999999864  466789888865444432 1223478999999999988887777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|||++++.++ +++..|...+...                             .....|+++++||.|+.    
T Consensus        75 ~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~-----------------------------~~~~~~~i~~~~k~d~~----  120 (166)
T d1g16a_          75 AMGIILVYDITDERTF-TNIKQWFKTVNEH-----------------------------ANDEAQLLLVGNKSDME----  120 (166)
T ss_dssp             EEEEEEEEETTCHHHH-HTHHHHHHHHHHH-----------------------------SCTTCEEEEEEECTTCT----
T ss_pred             CCEEEEEEECCCccCH-HHHHhhhhhhhcc-----------------------------ccCcceeeeecchhhhh----
Confidence            9999999999999998 7888887655543                             22367999999999984    


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+....++++.++..+|+++++|||++|.|++++++.|.+.+.
T Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~  163 (166)
T d1g16a_         121 --TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             --TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             --hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHH
Confidence              4556677899999999999999999999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.7e-21  Score=192.37  Aligned_cols=165  Identities=16%  Similarity=0.234  Sum_probs=129.6

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTA  110 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~  110 (890)
                      ...+||+|+|++|||||||+++|+++.  ..+.++.+..+...... .......+.+||++|++.+..+...+    +  
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~~~~~----~--   77 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIS-VDGNKAKLAIWDTAGQERFRTLTPSY----Y--   77 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE-ETTEEEEEEEEEECSSGGGCCSHHHH----H--
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEE-EeccccEEEEEECCCchhhHHHHHHH----H--
Confidence            456899999999999999999999864  35556666554322222 11223389999999999988888777    1  


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .+++++|+|||++++.++ +.+..|++.+.+.                            ......|+++++||.|..  
T Consensus        78 ~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~----------------------------~~~~~~~i~~~~nk~d~~--  126 (177)
T d1x3sa1          78 RGAQGVILVYDVTRRDTF-VKLDNWLNELETY----------------------------CTRNDIVNMLVGNKIDKE--  126 (177)
T ss_dssp             TTCCEEEEEEETTCHHHH-HTHHHHHHHHTTC----------------------------CSCSCCEEEEEEECTTSS--
T ss_pred             hcCCEEEEEEECCCcccc-ccchhhhhhhccc----------------------------ccccceeeEEEeeccccc--
Confidence            259999999999999998 7778887755331                            123368999999999974  


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhcc
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFSS  239 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~~  239 (890)
                          ++.+...+++.+++.+++.+++|||++|.|++++++.+.+.+...
T Consensus       127 ----~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         127 ----NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             ----SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             ----cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence                566778889999999999999999999999999999988887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.4e-21  Score=191.27  Aligned_cols=165  Identities=17%  Similarity=0.209  Sum_probs=122.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ..||+|+|++|||||||+++|+++.  .++.||++..+.  ...........+++||++|++.+..+...+    ++  +
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~--~   73 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT--ASFEIDTQRIELSLWDTSGSPYYDNVRPLS----YP--D   73 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE--EEEECSSCEEEEEEEEECCSGGGTTTGGGG----CT--T
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeccc--ccccccceEEeeccccccccccccccccch----hh--h
Confidence            4689999999999999999999874  467788774332  222222223489999999999988877766    33  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC-
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL-  191 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~-  191 (890)
                      ++++|+|||+++++|| +++..|........                             ..++|++|||||+|+..+. 
T Consensus        74 ~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~-----------------------------~~~~~iilVgnK~Dl~~~~~  123 (179)
T d1m7ba_          74 SDAVLICFDISRPETL-DSVLKKWKGEIQEF-----------------------------CPNTKMLLVGCKSDLRTDVS  123 (179)
T ss_dssp             CSEEEEEEETTCHHHH-HHHHHTHHHHHHHH-----------------------------CTTCEEEEEEECGGGGGCHH
T ss_pred             hhhhheeeecccCCCH-HHHHHHHHHHHhcc-----------------------------CCcceEEEEEecccccccch
Confidence            9999999999999999 66665443322211                             1258999999999985321 


Q ss_pred             ------CcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCC-HHHHHHHHHHHHh
Q psy11649        192 ------EPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGL-VKRTRDILNHYAF  237 (890)
Q Consensus       192 ------d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~n-Id~Lk~~I~~~lf  237 (890)
                            +..++.+..++...+|++++ +.|++|||++|.| ++++++.+...+.
T Consensus       124 ~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         124 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  177 (179)
T ss_dssp             HHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             hhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHh
Confidence                  11234567788999999987 5799999999985 9999888877653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-20  Score=185.66  Aligned_cols=163  Identities=15%  Similarity=0.124  Sum_probs=122.2

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .+++||+++|++|||||||+++|+++.. .+.++.+..|.  +..........++|||++|+..+.    .++       
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~--~~i~v~~~~~~l~i~Dt~g~~~~~----~~~-------   69 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK--KEMLVDGQTHLVLIREEAGAPDAK----FSG-------   69 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEE--EEEEETTEEEEEEEEECSSCCCHH----HHH-------
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEE--EEeecCceEEEEEEeecccccccc----ccc-------
Confidence            4589999999999999999999998754 34455554442  222222223489999999987643    122       


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ++|++|+|||+++++|| +++..|+..+......                          ....+|+++||||.|+-.  
T Consensus        70 ~ad~~ilVfd~~~~~Sf-~~~~~~~~~i~~~~~~--------------------------~~~~~pi~lV~~k~d~d~--  120 (175)
T d2bmja1          70 WADAVIFVFSLEDENSF-QAVSRLHGQLSSLRGE--------------------------GRGGLALALVGTQDRISA--  120 (175)
T ss_dssp             HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHCC----------------------------CCCCEEEEEEECTTCCS--
T ss_pred             ccceeEEEeecccchhh-hhhHHHHHHHHHHhhc--------------------------ccCCccEEEEeeecCcch--
Confidence            48999999999999999 8899998877654221                          123689999999999732  


Q ss_pred             CcchhhhhHHHHHHHHHH-cCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        192 EPNKKRIAVQCLRYLAHV-NGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~-~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                       ..++.+...+++.++.. +++.|++|||++|.|+++++..+.+.++.
T Consensus       121 -~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~  167 (175)
T d2bmja1         121 -SSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVT  167 (175)
T ss_dssp             -SSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             -hhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence             23456667788888765 57899999999999999998888877653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=183.08  Aligned_cols=160  Identities=17%  Similarity=0.204  Sum_probs=117.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC--CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN--DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~--~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      +++||+|+|++|||||||+++|+++.  ..+.||++.++.  ....   ....+++||+||++.+......+      ..
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~---~~~~~~i~D~~G~~~~~~~~~~~------~~   69 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK---GNVTIKLWDIGGQPRFRSMWERY------CR   69 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE---TTEEEEEEEECCSHHHHTTHHHH------HT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeee---eeEEEEEeecccccccccccccc------cc
Confidence            37899999999999999999999864  456788886542  3322   23489999999999888877776      22


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++++|||+++..++ +....|+..+.+.                            ....++|++||+||+|+....
T Consensus        70 ~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~pi~lv~nK~Dl~~~~  120 (164)
T d1zd9a1          70 GVSAIVYMVDAADQEKI-EASKNELHNLLDK----------------------------PQLQGIPVLVLGNKRDLPGAL  120 (164)
T ss_dssp             TCSEEEEEEETTCGGGH-HHHHHHHHHHHTC----------------------------GGGTTCCEEEEEECTTSTTCC
T ss_pred             ccchhhccccccccccc-chhhhhhhhhhhh----------------------------hcccCCcEEEEEeccccchhh
Confidence            59999999999999998 6666665543321                            112368999999999985322


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      +  .++.........+...++.+++|||++|.|+++++++|.+.
T Consensus       121 ~--~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         121 D--EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             C--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             h--HHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            2  23333333333444567789999999999999998887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.82  E-value=2.8e-20  Score=182.26  Aligned_cols=159  Identities=16%  Similarity=0.177  Sum_probs=111.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .+++||+++|++|||||||+++|+++.. ...++.+..  +.....   ....+++||++|++.+......+    ++  
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~--~~~i~~---~~~~~~i~d~~g~~~~~~~~~~~----~~--   82 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQS---QGFKLNVWDIGGQRKIRPYWRSY----FE--   82 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEE---TTEEEEEEECSSCGGGHHHHHHH----HT--
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeee--EEEecc---CCeeEeEeeccccccchhHHHHH----hh--
Confidence            4579999999999999999999988644 333444433  222222   23479999999999998888777    22  


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      +++++|+|||++++.++ ..+..|+..+...                            ....++|++|||||+|+....
T Consensus        83 ~~~~ii~v~d~~d~~s~-~~~~~~~~~~~~~----------------------------~~~~~~pillv~nK~Dl~~~~  133 (176)
T d1fzqa_          83 NTDILIYVIDSADRKRF-EETGQELTELLEE----------------------------EKLSCVPVLIFANKQDLLTAA  133 (176)
T ss_dssp             TCSEEEEEEETTCGGGH-HHHHHHHHHHTTC----------------------------GGGTTCCEEEEEECTTSTTCC
T ss_pred             ccceeEEeeccccccch-hhhhhhhhhhhhh----------------------------hccCCCeEEEEEEeccccccc
Confidence            59999999999999998 5555555433221                            122368999999999996321


Q ss_pred             CcchhhhhHHHH-HHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCL-RYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       192 d~e~r~~i~~~l-r~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                         ....+.+.+ ...+...++.+++|||++|.|+++++++|..
T Consensus       134 ---~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         134 ---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             ---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence               111111111 1223344678999999999999999988765

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.81  E-value=1e-19  Score=176.55  Aligned_cols=157  Identities=18%  Similarity=0.166  Sum_probs=110.0

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +++||+|+|++|||||||+++|++.. ..+.||++..  .....   ..+..+.+||++|++.+......+    ++  +
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~--~~~~~---~~~~~~~~~D~~G~~~~~~~~~~~----~~--~   69 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLE---HRGFKLNIWDVGGQKSLRSYWRNY----FE--S   69 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEE---ETTEEEEEEEECCSHHHHTTGGGG----CT--T
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeee--eeecc---ccccceeeeecCcchhhhhHHHhh----hh--h
Confidence            36899999999999999999999863 3455676643  22322   233489999999998887777666    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|+++..++.+....|...+..                             ....++|++||+||+|+..   
T Consensus        70 ~~~~i~v~d~~d~~~~~~~~~~~~~~~~~-----------------------------~~~~~~p~iiv~nK~Dl~~---  117 (165)
T d1ksha_          70 TDGLIWVVDSADRQRMQDCQRELQSLLVE-----------------------------ERLAGATLLIFANKQDLPG---  117 (165)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTC-----------------------------GGGTTCEEEEEEECTTSTT---
T ss_pred             hhcceeeeecccchhHHHHHHhhhhhhhh-----------------------------cccCCCceEEEEecccccc---
Confidence            89999999999999984444444332211                             1223689999999999852   


Q ss_pred             cchhhhhHHHHHHHH----HHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLA----HVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la----~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        .+. ..+....+.    ...++.+++|||++|.|++++.++|.+.+
T Consensus       118 --~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i  162 (165)
T d1ksha_         118 --ALS-CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI  162 (165)
T ss_dssp             --CCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             --ccC-HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence              111 112222221    22346799999999999999999987765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.80  E-value=1.8e-20  Score=185.26  Aligned_cols=162  Identities=17%  Similarity=0.193  Sum_probs=110.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCC-CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKN-DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~-~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +++||+++|++|||||||+++|+++. ....||.+....  ....   ....+.+||++|++.+..+...+    +.  +
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~---~~~~~~i~D~~g~~~~~~~~~~~----~~--~   84 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSY---KNLKLNVWDLGGQTSIRPYWRCY----YA--D   84 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEE---TTEEEEEEEEC----CCTTGGGT----TT--T
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEE--EEee---CCEEEEEEecccccccchhHHhh----hc--c
Confidence            47899999999999999999998753 234467665432  2221   23479999999999988888777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|++++.++ .....|+..+.+   .                         ....++|++|||||+|+....+
T Consensus        85 ~~~ii~v~d~~d~~s~-~~~~~~l~~~~~---~-------------------------~~~~~~piliv~NK~Dl~~~~~  135 (182)
T d1moza_          85 TAAVIFVVDSTDKDRM-STASKELHLMLQ---E-------------------------EELQDAALLVFANKQDQPGALS  135 (182)
T ss_dssp             EEEEEEEEETTCTTTH-HHHHHHHHHHTT---S-------------------------STTSSCEEEEEEECTTSTTCCC
T ss_pred             ceeEEEEeeecccccc-hhHHHHHHHHHH---h-------------------------hccCCcceEEEEEeeccccccC
Confidence            9999999999999998 555555542211   1                         1223689999999999853211


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                        .+++........+...++.+++|||++|.|+++++++|...+.
T Consensus       136 --~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         136 --ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             --HHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence              2222222111223445678999999999999999999988763

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.80  E-value=8e-20  Score=179.36  Aligned_cols=160  Identities=14%  Similarity=0.175  Sum_probs=112.4

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +++||+++|++|||||||+++|+++.. ...+|.+..+  ....   .....+.+||+||+..+......+    ++  +
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~--~~~~---~~~~~~~i~D~~g~~~~~~~~~~~----~~--~   79 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVT---YKNVKFNVWDVGGQDKIRPLWRHY----YT--G   79 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEE--EEEE---ETTEEEEEEEESCCGGGHHHHGGG----TT--T
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeE--EEee---ccceeeEEecCCCcchhhhHHHhh----hc--c
Confidence            468999999999999999999997543 3335555432  1222   223479999999999988887777    22  5


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++|+|+|+++++++ .++..|+....+.                            ......|++||+||+|+.....
T Consensus        80 ~~~ii~v~D~s~~~~~-~~~~~~l~~~~~~----------------------------~~~~~~piiiv~NK~Dl~~~~~  130 (173)
T d1e0sa_          80 TQGLIFVVDCADRDRI-DEARQELHRIIND----------------------------REMRDAIILIFANKQDLPDAMK  130 (173)
T ss_dssp             CCEEEEEEETTCGGGH-HHHHHHHHHHHTS----------------------------GGGTTCEEEEEEECTTSTTCCC
T ss_pred             cceEEEEEecccchhH-HHHHHHHHHHhhh----------------------------cccccceeeeeeeccccccccc
Confidence            9999999999999998 6666666533221                            1123589999999999853211


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                        ..++........+...++.+++|||++|+|+++++++|...
T Consensus       131 --~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~  171 (173)
T d1e0sa_         131 --PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSN  171 (173)
T ss_dssp             --HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHh
Confidence              12222221122333446789999999999999999998765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.77  E-value=8e-19  Score=167.30  Aligned_cols=158  Identities=15%  Similarity=0.169  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCC-CCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTP-KPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~-kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      +||+|+|++|||||||+++|++++... .++....  .....   .....+.+||++|...+......+    ++  +++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~d~~g~~~~~~~~~~~----~~--~~~   69 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVE---YKNISFTVWDVGGQDKIRPLWRHY----FQ--NTQ   69 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEE---CSSCEEEEEECCCCGGGHHHHHHH----TT--TCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE--EEEEe---eeeEEEEEecCCCcccchhhhhhh----hc--cce
Confidence            589999999999999999999854321 1222211  11111   223489999999998887777776    12  489


Q ss_pred             EEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcc
Q psy11649        115 TLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPN  194 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e  194 (890)
                      ++++|+|++++.++ ..+..|...+...                            .....+|+++|+||.|+....  .
T Consensus        70 ~~i~~~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~~i~~v~~k~d~~~~~--~  118 (160)
T d1r8sa_          70 GLIFVVDSNDRERV-NEAREELMRMLAE----------------------------DELRDAVLLVFANKQDLPNAM--N  118 (160)
T ss_dssp             EEEEEEETTCGGGH-HHHHHHHHHHHTC----------------------------GGGTTCEEEEEEECTTSTTCC--C
T ss_pred             eEEEEEEecChHHH-HHHHHHHHHHHHh----------------------------hcccCceEEEEeecccccccc--c
Confidence            99999999999998 6666665433221                            122368999999999985321  2


Q ss_pred             hhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        195 KKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       195 ~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      .+++.......++...++.+++|||++|.|+++++++|.+.
T Consensus       119 ~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence            33333343445566678899999999999999999998875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.2e-17  Score=165.04  Aligned_cols=164  Identities=17%  Similarity=0.127  Sum_probs=115.2

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +++||+++|+.|||||||++||+.+.+++.||+|+++.  ....   ....+++||++|++.+..++..+    ++  ++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG~~~~--~~~~---~~~~~~~~d~~g~~~~~~~~~~~----~~--~~   69 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEY--PFDL---QSVIFRMVDVGGQRSERRKWIHC----FE--NV   69 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSSCCCCCSCEEE--EEEC---SSCEEEEEECCCSTTGGGGGGGG----CS--SC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCCCCceeeEEEE--EEec---cceeeeecccccccccccccccc----cc--cc
Confidence            47899999999999999999999888889999997743  3322   23379999999999999998888    33  58


Q ss_pred             cEEEEEEeCCCcCc----------hHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        114 FTLVLMLDLSRLNS----------LWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       114 d~IIIV~DlSnp~S----------~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                      +++++|+|+++..+          +.+++..|...+.+..                             ...+|+++|+|
T Consensus        70 ~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-----------------------------~~~~~~~~v~N  120 (200)
T d2bcjq2          70 TSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW-----------------------------FQNSSVILFLN  120 (200)
T ss_dssp             SEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG-----------------------------GSSSEEEEEEE
T ss_pred             ceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh-----------------------------ccCccEEEecc
Confidence            99999999998654          2245556665443321                             12689999999


Q ss_pred             cccCCCCC-C----------cchhhhhHHHHHHHH----HH------cCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        184 KYDLFENL-E----------PNKKRIAVQCLRYLA----HV------NGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       184 K~Dl~~d~-d----------~e~r~~i~~~lr~la----~~------~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      |.|+.+.. .          ........+....+.    ..      ..+.+++|||+++.||+++++.|...+.
T Consensus       121 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         121 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             CHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence            99985310 0          000001111112211    11      1234789999999999999999887764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=6.2e-17  Score=159.18  Aligned_cols=157  Identities=18%  Similarity=0.206  Sum_probs=104.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFS  107 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~  107 (890)
                      .-+|+|+|.+|||||||+|+|++...   ...++.+.+..+.....   .+..+.+|||||..........+    ....
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE---GRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE---TTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeee---eeeeeeecccccccccccccchhcccccccc
Confidence            45799999999999999999998632   33344444433322222   23479999999986543322222    0111


Q ss_pred             cccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        108 LTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       108 ~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +.  ++|++|+|+|++++.+.  .-..|.+.+++.                              ...+|+++|+||+|+
T Consensus        82 ~~--~ad~il~v~D~~~~~~~--~~~~i~~~l~~~------------------------------~~~~piilv~NK~Dl  127 (178)
T d1wf3a1          82 LA--DVNAVVWVVDLRHPPTP--EDELVARALKPL------------------------------VGKVPILLVGNKLDA  127 (178)
T ss_dssp             TS--SCSEEEEEEETTSCCCH--HHHHHHHHHGGG------------------------------TTTSCEEEEEECGGG
T ss_pred             cc--cccceeeeechhhhhcc--cccchhhheecc------------------------------ccchhhhhhhccccc
Confidence            22  59999999999987663  334444433221                              124799999999998


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        188 FENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       188 ~~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..     ..   .+..+.+...++ ..++++||+++.|+++|++.|...+
T Consensus       128 ~~-----~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         128 AK-----YP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             CS-----SH---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             cc-----CH---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            63     11   233445555565 5689999999999999999998776

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.70  E-value=1.1e-16  Score=153.03  Aligned_cols=162  Identities=14%  Similarity=0.154  Sum_probs=112.5

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQ  111 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~  111 (890)
                      .+++||++||++|||||||+++|+++.. ...++.+..+  ....   .....+.+|+.+|...........      ..
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~   71 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVT---YKNLKFQVWDLGGLTSIRPYWRCY------YS   71 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEE---ETTEEEEEEEECCCGGGGGGGGGG------CT
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCcceecccceee--eeec---cCceEEEEeeccccccccccchhh------hh
Confidence            4579999999999999999999999744 2335544322  1111   123478999999988776666555      11


Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      ..+++++++|+++..++ .....+.....+.                            ......|+++|+||.|+....
T Consensus        72 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~~i~iv~nk~Dl~~~~  122 (169)
T d1upta_          72 NTDAVIYVVDSCDRDRI-GISKSELVAMLEE----------------------------EELRKAILVVFANKQDMEQAM  122 (169)
T ss_dssp             TCSEEEEEEETTCCTTH-HHHHHHHHHHHTC----------------------------GGGTTCEEEEEEECTTSTTCC
T ss_pred             hhhhhhhhhhhhhcchh-hhccchhhhhhhh----------------------------hccccceEEEEEeeccccccc
Confidence            48899999999998887 3333332221110                            122358999999999996322


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .  ..++.......++...++++++|||++|.|++++++.|.+.+
T Consensus       123 ~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         123 T--SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL  165 (169)
T ss_dssp             C--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             c--HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            2  233334444455666778999999999999999999998876

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.67  E-value=9.7e-17  Score=156.16  Aligned_cols=161  Identities=14%  Similarity=0.154  Sum_probs=102.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCC-CCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDT-PKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~-~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      +++||+|+|.+|||||||+++|.++... ..++.+....  ...   .....+.+||++|..........+      ...
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~d~~~~~~~~~~~~~~------~~~   82 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIV---INNTRFLMWDIGGQESLRSSWNTY------YTN   82 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEE---ETTEEEEEEECCC----CGGGHHH------HTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEE--EEe---ecceEEEEeccccccccccchhhh------hcc
Confidence            3689999999999999999999986432 2233332211  111   123479999999987766665555      114


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      ++++++|+|.++..++ +....+.......                            ......|+++|+||+|+.....
T Consensus        83 ~~~~i~v~d~~d~~~~-~~~~~~~~~~~~~----------------------------~~~~~~p~iiv~nK~Dl~~~~~  133 (177)
T d1zj6a1          83 TEFVIVVVDSTDRERI-SVTREELYKMLAH----------------------------EDLRKAGLLIFANKQDVKECMT  133 (177)
T ss_dssp             CCEEEEEEETTCTTTH-HHHHHHHHHHHTS----------------------------GGGTTCEEEEEEECTTSTTCCC
T ss_pred             ceeeeeecccccccch-hhhhhhhhhhhhc----------------------------ccccceEEEEEEEcccccccCc
Confidence            8999999999999997 3333332211110                            1224789999999999852111


Q ss_pred             cchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                        ..+.........+...++++++|||++|.|++++.++|...+
T Consensus       134 --~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         134 --VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             --HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence              111111111112233467899999999999999999998765

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=3.7e-16  Score=153.65  Aligned_cols=160  Identities=18%  Similarity=0.153  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh----hHHhhhhcccccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL----EVASLFSSFSLTA  110 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~----~Li~~~r~~~~~~  110 (890)
                      .|+|+|.+|||||||+|+|++...  ...++.+.+..+....  ......+.+|||||.....    .+...+-. .+. 
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~-~~~-   78 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVE--VSEEERFTLADIPGIIEGASEGKGLGLEFLR-HIA-   78 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEE--CSSSCEEEEEECCCCCCCGGGSCCSCHHHHH-HHT-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceee--ecCCCeEEEcCCCeeecCchHHHHHHHHHHH-HHH-
Confidence            489999999999999999998532  1112233332221111  1222379999999964321    11111100 011 


Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                       .++++++++|.+....  ..+..|...+......                           ..++|+++|+||+|+.. 
T Consensus        79 -~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~~---------------------------~~~~p~iiv~NK~D~~~-  127 (180)
T d1udxa2          79 -RTRVLLYVLDAADEPL--KTLETLRKEVGAYDPA---------------------------LLRRPSLVALNKVDLLE-  127 (180)
T ss_dssp             -SSSEEEEEEETTSCHH--HHHHHHHHHHHHHCHH---------------------------HHHSCEEEEEECCTTSC-
T ss_pred             -hhhhhhhhcccccccc--cchhhhhhhhhccccc---------------------------cchhhhhhhhhhhhhhh-
Confidence             4899999999876432  3555554444332111                           11479999999999962 


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                           +... +.+.+.....+.+++++||++|.|+++|++.|...+-
T Consensus       128 -----~~~~-~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         128 -----EEAV-KALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             -----HHHH-HHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -----HHHH-HHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence                 2222 2344455567899999999999999999999988873

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.9e-16  Score=152.09  Aligned_cols=152  Identities=14%  Similarity=0.161  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh----hcccc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF----SSFSL  108 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~----r~~~~  108 (890)
                      +||+++|.+|||||||+|+|++...   ...++...+.......   .....+.+||++|...........    ....+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH---IDGMPLHIIDTAGLREASDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEE---ETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeee---ccCceeeeccccccccccccchhHHHHHHHHHH
Confidence            6899999999999999999998532   3334444332221111   223478999999975432211111    11112


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      .  ++|++++++|.++..++ +....|.+.+...                              ..++|+++|+||+|+.
T Consensus        79 ~--~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~------------------------------~~~~~iilv~NK~Dl~  125 (161)
T d2gj8a1          79 E--QADRVLFMVDGTTTDAV-DPAEIWPEFIARL------------------------------PAKLPITVVRNKADIT  125 (161)
T ss_dssp             H--TCSEEEEEEETTTCCCC-SHHHHCHHHHHHS------------------------------CTTCCEEEEEECHHHH
T ss_pred             H--hccccceeeccccccch-hhhhhhhhhhhhc------------------------------ccccceeeccchhhhh
Confidence            2  59999999999998876 5556565544321                              1258999999999985


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      .+.. ..           ....+.+++++||++|.|+++|++.|.+.
T Consensus       126 ~~~~-~~-----------~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         126 GETL-GM-----------SEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CCCC-EE-----------EEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhHH-HH-----------HHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            3211 01           11246789999999999999999988764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=1.3e-16  Score=156.90  Aligned_cols=164  Identities=17%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      +++||++||+.|||||||++||....   .||++...  ...   ......++|||++|++.+..++..+    ++  ++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~---~~t~~~~~--~~~---~~~~~~~~i~D~~Gq~~~~~~~~~~----~~--~~   66 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIH---EAGTGIVE--THF---TFKDLHFKMFDVGGQRSERKKWIHC----FE--GV   66 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH---SCCCSEEE--EEE---EETTEEEEEEEECCSGGGGGGGGGG----CT--TC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC---CCCccEEE--EEE---Eeeeeeeeeeccccccccccchhhc----cc--CC
Confidence            37899999999999999999998642   24555321  111   2233489999999999999999988    33  59


Q ss_pred             cEEEEEEeCCCcCchHHHHHH-------HHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        114 FTLVLMLDLSRLNSLWTEAET-------FLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~-------wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      +++++|+|+++..++ .....       +.......+..                         .....+|+++++||+|
T Consensus        67 ~~~i~v~d~~~~~~~-~~~~~~~~~~~e~~~~~~~i~~~-------------------------~~~~~~~~~lv~Nk~d  120 (195)
T d1svsa1          67 TAIIFCVALSDYDLV-LAEDEEMNRMHESMKLFDSICNN-------------------------KWFTDTSIILFLNKKD  120 (195)
T ss_dssp             SEEEEEEEGGGGGCB-CSSCTTSBHHHHHHHHHHHHHTC-------------------------GGGTTSEEEEEEECHH
T ss_pred             ceeeeEEeecccchH-HHHhhhhHHHHHHHHHHHHHhcc-------------------------cccCCCCEEEEeccch
Confidence            999999999998876 22111       11111111111                         2233689999999999


Q ss_pred             CCCC----------CCc-chhhhhHHHH----HHHHHH------cCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        187 LFEN----------LEP-NKKRIAVQCL----RYLAHV------NGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       187 l~~d----------~d~-e~r~~i~~~l----r~la~~------~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      +...          +.. ..........    ..+...      ..+.+++|||+++.||+++++.+...++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         121 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             HHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            7421          000 0000011111    122211      1345778999999999999998887764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1e-15  Score=145.00  Aligned_cols=155  Identities=16%  Similarity=0.179  Sum_probs=103.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCcE
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFT  115 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~  115 (890)
                      ||+++|++|||||||+|+|+++.. .+.||.+..+  .....   ......+||++|...+......+    +  ..+++
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~   70 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAI---GNIKFTTFDLGGHIQARRLWKDY----F--PEVNG   70 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEECC---TTCCEEEEECCCSGGGGGGGGGG----C--TTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeE--EEecc---CCeeEEEEeeccchhhhhhHhhh----h--hheee
Confidence            799999999999999999998643 4556666432  12111   22378999999998877776666    1  14899


Q ss_pred             EEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCCcch
Q psy11649        116 LVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLEPNK  195 (890)
Q Consensus       116 IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d~e~  195 (890)
                      +++++|.+++.++ .....|.......                            ......|+++++||.|+....... 
T Consensus        71 ~~~~~d~~~~~~~-~~~~~~~~~~~~~----------------------------~~~~~~~i~i~~~k~d~~~~~~~~-  120 (166)
T d2qtvb1          71 IVFLVDAADPERF-DEARVELDALFNI----------------------------AELKDVPFVILGNKIDAPNAVSEA-  120 (166)
T ss_dssp             EEEEEETTCGGGH-HHHHHHHHHHHTC----------------------------TTTTTCCEEEEEECTTSSSCCCHH-
T ss_pred             eeeeccccchhhh-hhhhHHHHhhhhh----------------------------hccCCceEEEEeccccccccCCHH-
Confidence            9999999999987 3344443322211                            223468999999999985322211 


Q ss_pred             hhhhHHH--------HHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        196 KRIAVQC--------LRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       196 r~~i~~~--------lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                       +. .+.        ...+....++.+++|||++|+|+++++++|.+
T Consensus       121 -~i-~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         121 -EL-RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             -HH-HHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             -HH-HHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence             10 000        01111223457999999999999999988753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=7.3e-16  Score=152.80  Aligned_cols=166  Identities=16%  Similarity=0.135  Sum_probs=103.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccCc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGF  114 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad  114 (890)
                      .+||+++|++|||||||++||.. ...+.||+|+.+  .+...   ....+++||++|++.+...+..+    ++  +++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~f-~~~~~pTiG~~~--~~~~~---~~~~~~~~D~~gq~~~~~~~~~~----~~--~~~   69 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMRI-IHGQDPTKGIHE--YDFEI---KNVPFKMVDVGGQRSERKRWFEC----FD--SVT   69 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH-HHSCCCCSSEEE--EEEEE---TTEEEEEEEECC-------CTTS----CT--TCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc-CCCCCCeeeeEE--EEEee---eeeeeeeecccceeeeccccccc----cc--ccc
Confidence            57999999999999999999943 345678999653  23322   23479999999999888887777    22  589


Q ss_pred             EEEEEEeCCCcCchH------HHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        115 TLVLMLDLSRLNSLW------TEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       115 ~IIIV~DlSnp~S~~------~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      ++++|+|.++..+++      ..+..|...+...+..                         ....++|++||+||+|+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------------------~~~~~~piilv~NK~Dl~  124 (200)
T d1zcba2          70 SILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-------------------------RVFSNVSIILFLNKTDLL  124 (200)
T ss_dssp             EEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-------------------------GGGTTSEEEEEEECHHHH
T ss_pred             eeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhC-------------------------hhhcCceEEEEeccchhh
Confidence            999999999976542      2334444443333322                         223468999999999986


Q ss_pred             CC-CC--------------cchhhhhHHHHHHHHHH-------cCCeEEEEeccCCCCHHHHHHHHHHHHh
Q psy11649        189 EN-LE--------------PNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYAF  237 (890)
Q Consensus       189 ~d-~d--------------~e~r~~i~~~lr~la~~-------~Ga~l~etSAK~~~nId~Lk~~I~~~lf  237 (890)
                      ++ ..              ++......+.+......       ..+-.++|||+++.||+.+++.+...+.
T Consensus       125 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         125 EEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             HHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence            31 00              00001111112221111       1244678999999999999988877664

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=4e-15  Score=144.89  Aligned_cols=156  Identities=14%  Similarity=0.104  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchh------hHHhhhhcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRL------EVASLFSSF  106 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~------~Li~~~r~~  106 (890)
                      .+|+|+|.+|||||||+|+|++...   ...+..+....+...   ......+.+||++|.....      .....+.. 
T Consensus         1 a~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~-   76 (171)
T d1mkya1           1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTV---EWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLN-   76 (171)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEE---EETTEEEEEEECTTTTSSGGGCCCHHHHHHHHH-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccc---cccccccccccccceeeeecccccccccccccc-
Confidence            4799999999999999999998532   112222222111111   1122378999999964321      11111110 


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .+  ..+|+++++.|.++....  ....+.+.++..                                ++|+++|+||+|
T Consensus        77 ~~--~~ad~i~~~~~~~~~~~~--~~~~~~~~l~~~--------------------------------~~pviiv~NK~D  120 (171)
T d1mkya1          77 MI--READLVLFVVDGKRGITK--EDESLADFLRKS--------------------------------TVDTILVANKAE  120 (171)
T ss_dssp             HH--TTCSEEEEEEETTTCCCH--HHHHHHHHHHHH--------------------------------TCCEEEEEESCC
T ss_pred             cc--ccCcEEEEeecccccccc--cccccccccccc--------------------------------cccccccchhhh
Confidence            01  148999999999887764  444555444321                                579999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHHhc
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAFS  238 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~lf~  238 (890)
                      +..       +...+...++.......++++||++|.|+++|++.|...+..
T Consensus       121 l~~-------~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         121 NLR-------EFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE  165 (171)
T ss_dssp             SHH-------HHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hhh-------hhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCC
Confidence            852       111222333333334568999999999999999999988743

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.59  E-value=4e-15  Score=146.97  Aligned_cols=161  Identities=12%  Similarity=0.036  Sum_probs=100.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEE---eccccceEEEEEEcCCCcchhhHHhhhhcc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKS---GKTVMKDICHLWELGSGTSRLEVASLFSSF  106 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~---g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~  106 (890)
                      .+..+|+++|.+|+|||||+|+|++...   ....+...........   .....+..+.++|++|+..+.......   
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~---   79 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA---   79 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH---
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhh---
Confidence            4578999999999999999999997321   1101111000000000   111223478999999987765555444   


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                       +  ..+|++++|+|.++.... .....| ..+                                ...++|+++|+||+|
T Consensus        80 -l--~~~d~~ilv~d~~~g~~~-~~~~~~-~~~--------------------------------~~~~~p~iiv~NKiD  122 (179)
T d1wb1a4          80 -A--DIIDLALIVVDAKEGPKT-QTGEHM-LIL--------------------------------DHFNIPIIVVITKSD  122 (179)
T ss_dssp             -T--TSCCEEEEEEETTTCSCH-HHHHHH-HHH--------------------------------HHTTCCBCEEEECTT
T ss_pred             -h--hhccccccccccccccch-hhhhhh-hhh--------------------------------hhcCCcceecccccc
Confidence             1  148999999999986553 122212 111                                123689999999999


Q ss_pred             CCCCCCcchhhhhHHHHHHHHHH-c---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        187 LFENLEPNKKRIAVQCLRYLAHV-N---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~d~e~r~~i~~~lr~la~~-~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +..   .+..+...+..+.+... +   +.+++++||++|.|+++|+++|...+
T Consensus       123 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l  173 (179)
T d1wb1a4         123 NAG---TEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL  173 (179)
T ss_dssp             SSC---HHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccC---HHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcC
Confidence            863   12222223334443332 2   46799999999999999999998876

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.4e-14  Score=142.48  Aligned_cols=120  Identities=17%  Similarity=0.146  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhh-HHhhhhccccccccC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLE-VASLFSSFSLTAQSG  113 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~-Li~~~r~~~~~~~~a  113 (890)
                      ++|+|+|++|||||||+++|+++.. ...+|++.++.  ...........+.+||++|++++.. .+..+    +.  ++
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~----~~--~~   72 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRF----KS--SA   72 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHH----GG--GE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEE--EEEEeeeeeeeeeeeeccccccccchhhhhh----hh--hc
Confidence            4799999999999999999998632 33467765532  2332233344899999999987743 44444    11  48


Q ss_pred             cEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        114 FTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                      +++++|+|+++..++......|+..+......                          ....+|++||+||+|+..
T Consensus        73 ~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~--------------------------~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          73 RAVVFVVDSAAFQREVKDVAEFLYQVLIDSMA--------------------------LKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             EEEEEEEETTTHHHHHHHHHHHHHHHHHHHHT--------------------------STTCCEEEEEEECTTSTT
T ss_pred             cccceEEEcccccccHHHHHHHHHHHHHhHHH--------------------------hhcCCcEEEEEECcccCC
Confidence            99999999999776434444444333222111                          122589999999999964

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.55  E-value=1e-14  Score=141.26  Aligned_cols=155  Identities=18%  Similarity=0.207  Sum_probs=97.6

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhcccccccc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQS  112 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~  112 (890)
                      ++.||+|||++|||||||+++|+++.. ...++.+..+.  ....   ....+..||+.+...+......+    ++  .
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~--~   80 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTI---AGMTFTTFDLGGHIQARRVWKNY----LP--A   80 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEE---TTEEEEEEEECC----CCGGGGG----GG--G
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee--EEEe---cccccccccccchhhhhhHHhhh----hc--c
Confidence            468999999999999999999998642 23345443321  1111   23368999999987776665555    11  3


Q ss_pred             CcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCCC
Q psy11649        113 GFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENLE  192 (890)
Q Consensus       113 ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~d  192 (890)
                      .+++++|+|+++...+.+....+......                             .....+|+++++||.|+....+
T Consensus        81 ~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~li~~~K~D~~~~~~  131 (186)
T d1f6ba_          81 INGIVFLVDCADHERLLESKEELDSLMTD-----------------------------ETIANVPILILGNKIDRPEAIS  131 (186)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTC-----------------------------GGGTTSCEEEEEECTTSTTCCC
T ss_pred             cceeeeeeeccCccchHHHHHHHHHhhcc-----------------------------cccCCCceEEEEeccCccccCC
Confidence            88999999999998873333333221110                             1123589999999999853221


Q ss_pred             cchhhhhHHHHHHHHH-----------------HcCCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        193 PNKKRIAVQCLRYLAH-----------------VNGASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       193 ~e~r~~i~~~lr~la~-----------------~~Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                             ...+.+...                 ..+..+++|||++|+|+++++++|.+.
T Consensus       132 -------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         132 -------EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             -------HHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             -------HHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence                   112222221                 123468999999999999999988754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.55  E-value=1.3e-14  Score=142.49  Aligned_cols=162  Identities=17%  Similarity=0.126  Sum_probs=93.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh--------
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF--------  103 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~--------  103 (890)
                      .+||+|+|.+|||||||+|+|++...   ...++.+.......   ....+..+.++|++|......+....        
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDE---VFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEE---EEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceee---eccCCceeeeeccCCccccccccccccccchhHH
Confidence            58999999999999999999998531   11122221110001   11123368899999975432221111        


Q ss_pred             hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEee
Q psy11649        104 SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGG  183 (890)
Q Consensus       104 r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgN  183 (890)
                      ....++  .+|++++|+|.+.+..-  ....+...+.+                                .+.|+++|+|
T Consensus        85 ~~~~~~--~~dvii~v~d~~~~~~~--~~~~~~~~~~~--------------------------------~~~~~i~v~n  128 (186)
T d1mkya2          85 VVDSIE--KADVVVIVLDATQGITR--QDQRMAGLMER--------------------------------RGRASVVVFN  128 (186)
T ss_dssp             HHHHHH--HCSEEEEEEETTTCCCH--HHHHHHHHHHH--------------------------------TTCEEEEEEE
T ss_pred             HHHHHh--cCCEEEEeecccccchh--hHHHHHHHHHH--------------------------------cCCceeeecc
Confidence            000112  48999999999887663  44444433222                                2589999999


Q ss_pred             cccCCCCCCcchhhhhHHHHHHHHHHc-CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        184 KYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       184 K~Dl~~d~d~e~r~~i~~~lr~la~~~-Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+|+....+. ......+.+++..... .++++++||++|.|+++|++.|...+
T Consensus       129 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         129 KWDLVVHREK-RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CGGGSTTGGG-CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             chhhhcchhh-hhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9998632111 1111111122211112 36799999999999999999996654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=2.9e-14  Score=139.37  Aligned_cols=157  Identities=17%  Similarity=0.187  Sum_probs=91.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCC--CCCCCccceeEEEEEEeccccceEEEEEEcCCCcc-----------hhhHHhh
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKND--TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTS-----------RLEVASL  102 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~--~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~-----------~~~Li~~  102 (890)
                      .+|+|+|.+|||||||+|+|++...  ...|+.+.+...    ....   .+.+|||||...           +......
T Consensus         1 a~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~----~~~~---~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~   73 (184)
T d2cxxa1           1 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE----IEWK---NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   73 (184)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE----EEET---TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccc----cccc---cceecccCCceeccccccccccccchhhhh
Confidence            3799999999999999999998532  233544544211    1111   378999999521           1111111


Q ss_pred             hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHH----HHHHHhhhhhhhhhccccccccccccccccccccCCCCcE
Q psy11649        103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAK----FRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPL  178 (890)
Q Consensus       103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~----I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPi  178 (890)
                      +.....+  .+|++++|+|.+.+...   ...+...    ....+.                        ......++|+
T Consensus        74 ~~~~~~~--~~d~~~~vvD~~~~~~~---~~~~~~~~~~~~d~~~~------------------------~~l~~~~~p~  124 (184)
T d2cxxa1          74 FIEDNAK--NIDVAVLVVDGKAAPEI---IKRWEKRGEIPIDVEFY------------------------QFLRELDIPT  124 (184)
T ss_dssp             HHHHHGG--GCCEEEEEEETTHHHHH---HHHHHHTTCCCHHHHHH------------------------HHHHHTTCCE
T ss_pred             hhhhccc--ccchheeeeeccccchh---hhhhhhccccHHHHHHH------------------------HHHHHcCCCE
Confidence            1111122  48999999998754332   1111110    000000                        0012246899


Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-------CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-------ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-------a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++|+||+|+..+    .+.    ....++..++       ..++++||++|.|+++|++.|...+
T Consensus       125 iiv~NK~D~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  181 (184)
T d2cxxa1         125 IVAVNKLDKIKN----VQE----VINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI  181 (184)
T ss_dssp             EEEEECGGGCSC----HHH----HHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeeeehhhh----HHH----HHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            999999998631    111    1222222222       2488999999999999999998776

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=2.6e-14  Score=136.86  Aligned_cols=145  Identities=15%  Similarity=0.177  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----------hhHHhh
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----------LEVASL  102 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----------~~Li~~  102 (890)
                      +||+|+|.+|||||||+|+|++..   ....++.+........   ...+..+.+||+||....          ......
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~   77 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEI---VIRGILFRIVDTAGVRSETNDLVERLGIERTLQE   77 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEE---EETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEE---EeCCeeEEeccccccccCCccHHHHHHHHHHHHH
Confidence            589999999999999999999842   2223333322211111   122347999999995321          111211


Q ss_pred             hhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEe
Q psy11649        103 FSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIG  182 (890)
Q Consensus       103 ~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVg  182 (890)
                      +     .  ++|++++|+|.+++... .. .....    ..                              ...|+++++
T Consensus        78 ~-----~--~ad~ii~v~d~~~~~~~-~~-~~~~~----~~------------------------------~~~~~i~~~  114 (160)
T d1xzpa2          78 I-----E--KADIVLFVLDASSPLDE-ED-RKILE----RI------------------------------KNKRYLVVI  114 (160)
T ss_dssp             H-----H--HCSEEEEEEETTSCCCH-HH-HHHHH----HH------------------------------TTSSEEEEE
T ss_pred             H-----H--hCCEEEEEEeCCCCcch-hh-hhhhh----hc------------------------------ccccceeee
Confidence            2     1  48999999999998875 22 22111    11                              136899999


Q ss_pred             ecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHH
Q psy11649        183 GKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  234 (890)
Q Consensus       183 NK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~  234 (890)
                      ||+|+....+       .+++.. ....+.+++++||++|.|+++|++.|.+
T Consensus       115 ~k~d~~~~~~-------~~~~~~-~~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         115 NKVDVVEKIN-------EEEIKN-KLGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             EECSSCCCCC-------HHHHHH-HHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             eeccccchhh-------hHHHHH-HhCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            9999964222       111111 1123568999999999999999998864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=2e-14  Score=141.40  Aligned_cols=159  Identities=17%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hcccc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSFSL  108 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~~~  108 (890)
                      .|+|+|.+|||||||+|+|++..   .++ +..+.+.......  ......+.+|||||..+.    ..+...+ +. ..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~-~~~T~~~~~~~~~--~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~-~~   78 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADY-HFTTLVPNLGMVE--TDDGRSFVMADLPGLIEGAHQGVGLGHQFLRH-IE   78 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESST-TSSCCCCCEEEEE--CSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHH-HH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecC-CCceEeeeeceeE--ecCCcEEEEecCCCcccCchHHHHHHHHHHHH-HH
Confidence            59999999999999999999843   223 2223232221211  122236899999996321    1121122 10 01


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                         .++.++.+++....... .....+..........                        .....++|+++|+||+|+.
T Consensus        79 ---~~~~i~~~v~~~~~~~~-~~~~~~~~~~~~~~~~------------------------~~~~~~kp~ivv~NK~Dl~  130 (185)
T d1lnza2          79 ---RTRVIVHVIDMSGLEGR-DPYDDYLTINQELSEY------------------------NLRLTERPQIIVANKMDMP  130 (185)
T ss_dssp             ---HCCEEEEEEESSCSSCC-CHHHHHHHHHHHHHHS------------------------CSSTTTSCBCBEEECTTST
T ss_pred             ---Hhhhhhheeeecccccc-hhhhhhhhhhhccchh------------------------hhhccCCcchhhccccchH
Confidence               27888888888776554 2222222111111000                        0222368999999999995


Q ss_pred             CCCCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      +     .+.    .+..+...+  +.+++++||++|.|+++|++.|...+
T Consensus       131 ~-----~~~----~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         131 E-----AAE----NLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             T-----HHH----HHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             h-----HHH----HHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            2     222    233444443  67899999999999999999998887

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.46  E-value=3.3e-13  Score=133.89  Aligned_cols=153  Identities=15%  Similarity=0.181  Sum_probs=91.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC----CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----------hhHH
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND----TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----------LEVA  100 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~----~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----------~~Li  100 (890)
                      -.+|+|+|.+|||||||+|+|++...    ...++.+.++..    ...  ...+.+.|++|....          ..+.
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~----~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   96 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNF----YII--NDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEE----EEE--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccc----ccc--cccceEEEEEeeccccccccccchhhhHH
Confidence            35899999999999999999998531    222333333211    111  113566777764221          1122


Q ss_pred             hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      ..+... .  .+++++++|+|.+++..-  .-..+++.+++                                .++|+++
T Consensus        97 ~~~~~~-~--~~~~~vi~viD~~~~~~~--~~~~~~~~l~~--------------------------------~~~piiv  139 (195)
T d1svia_          97 ETYITT-R--EELKAVVQIVDLRHAPSN--DDVQMYEFLKY--------------------------------YGIPVIV  139 (195)
T ss_dssp             HHHHHH-C--TTEEEEEEEEETTSCCCH--HHHHHHHHHHH--------------------------------TTCCEEE
T ss_pred             hhhhcc-c--cchhhhhhhhhccccccc--ccccccccccc--------------------------------ccCccee
Confidence            222011 1  137899999999886552  33344433322                                2589999


Q ss_pred             EeecccCCCCCCcchhhhhHHHHHHHHHH----cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        181 IGGKYDLFENLEPNKKRIAVQCLRYLAHV----NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       181 VgNK~Dl~~d~d~e~r~~i~~~lr~la~~----~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      |+||+|+..   .++.   .+....+...    .+..++++||++|.|+++|++.|...+
T Consensus       140 v~NK~D~~~---~~~~---~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         140 IATKADKIP---KGKW---DKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEECGGGSC---GGGH---HHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             chhhccccC---HHHH---HHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999862   1122   2223333332    356799999999999999999998875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=1.3e-13  Score=140.73  Aligned_cols=118  Identities=19%  Similarity=0.207  Sum_probs=83.1

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhhhccccccccC
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSG  113 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~a  113 (890)
                      ..+||+++|+.|||||||+++|...  .+.||+|+...  ....   .+..+++||++|+.+++..+..+    +.  ++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~--~~~pTiG~~~~--~~~~---~~~~~~~~D~~Gq~~~r~~w~~~----~~--~~   71 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRIL--HVVLTSGIFET--KFQV---DKVNFHMFDVGGQRDERRKWIQC----FN--DV   71 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHH--HCCCCCSCEEE--EEEE---TTEEEEEEECCCSTTTTTGGGGG----CT--TC
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcC--CcCCCCCeEEE--EEEE---CcEEEEEEecCccceeccchhhh----cc--cc
Confidence            3689999999999999999999754  34589996632  2221   23489999999999998888888    22  58


Q ss_pred             cEEEEEEeCCCcCchH------HHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccC
Q psy11649        114 FTLVLMLDLSRLNSLW------TEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDL  187 (890)
Q Consensus       114 d~IIIV~DlSnp~S~~------~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl  187 (890)
                      +++++|+|+++...++      ..+..+...+...+..                         .....+|++|+|||+|+
T Consensus        72 ~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~-------------------------~~~~~~~iil~~NK~Dl  126 (221)
T d1azta2          72 TAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN-------------------------RWLRTISVILFLNKQDL  126 (221)
T ss_dssp             SEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC-------------------------GGGSSCEEEEEEECHHH
T ss_pred             cceEEEEEccccccccccccchHHHHHHHHHHHHHhcC-------------------------hhhCCCcEEEEechhhh
Confidence            9999999999754321      1233333333333222                         11236899999999998


Q ss_pred             CC
Q psy11649        188 FE  189 (890)
Q Consensus       188 ~~  189 (890)
                      ++
T Consensus       127 ~~  128 (221)
T d1azta2         127 LA  128 (221)
T ss_dssp             HH
T ss_pred             hh
Confidence            63

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=2.4e-13  Score=135.26  Aligned_cols=121  Identities=17%  Similarity=0.191  Sum_probs=82.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccccC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQSG  113 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~a  113 (890)
                      +.+|+|+|.+|||||||+|+|+++...  ++++.+......   ......+.+||+||+.++......+ ......   .
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~--~~tt~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~---~   74 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVR--PTVVSQEPLSAA---DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF---V   74 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCC--CBCCCSSCEEET---TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGG---E
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC--CeEEecceEEEE---EeCCeEEEEEecccccchhhHHHHHHHHHhhh---c
Confidence            458999999999999999999986433  455544322121   1222368999999998876665555 221122   6


Q ss_pred             cEEEEEEeCCC-cCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCC
Q psy11649        114 FTLVLMLDLSR-LNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFE  189 (890)
Q Consensus       114 d~IIIV~DlSn-p~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~  189 (890)
                      +.+++++|.++ ..++ +....|+..+......                         ....++|+++|+||+|+..
T Consensus        75 ~~~i~~vd~~~~~~~~-~~~~~~l~~~~~~~~~-------------------------~~~~~~piiiv~NK~D~~~  125 (209)
T d1nrjb_          75 KGLIFMVDSTVDPKKL-TTTAEFLVDILSITES-------------------------SCENGIDILIACNKSELFT  125 (209)
T ss_dssp             EEEEEEEETTSCTTCC-HHHHHHHHHHHHHHHH-------------------------HSTTCCCEEEEEECTTSTT
T ss_pred             cccceEEEEecccccH-HHHHHHHHHHHHHHHH-------------------------HHhccCCeEEEEEeecccc
Confidence            78888999776 5555 6666776655444333                         2234799999999999864

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.9e-12  Score=125.68  Aligned_cols=159  Identities=19%  Similarity=0.130  Sum_probs=97.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhH--Hhhh-hcccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEV--ASLF-SSFSL  108 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~L--i~~~-r~~~~  108 (890)
                      .-.|+|+|.+|||||||+|+|++..   .++.++.......   .........+..||++|.......  .... +....
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIV---GIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEE---EEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEE---eeeecCCceeEeecCCCceecchhhhhhhhhhcccc
Confidence            3469999999999999999999853   2222333322111   111112235677898887543221  1111 11111


Q ss_pred             ccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCC
Q psy11649        109 TAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       109 ~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                      ....+++++++.|.++....   ...+...+.                                ....|.++|+||+|..
T Consensus        82 ~~~~~~~~l~~~d~~~~~~~---~~~~~~~l~--------------------------------~~~~~~i~v~~k~d~~  126 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWTPD---DEMVLNKLR--------------------------------EGKAPVILAVNKVDNV  126 (179)
T ss_dssp             CCCCEEEEEEEEETTCCCHH---HHHHHHHHH--------------------------------SSSSCEEEEEESTTTC
T ss_pred             chhhcceeEEEEecCccchh---HHHHHHHhh--------------------------------hccCceeeeeeeeecc
Confidence            11246778888887764442   222222111                                1247899999999986


Q ss_pred             CCCCcchhhhhHHHHHHHHHHcC-CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        189 ENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       189 ~d~d~e~r~~i~~~lr~la~~~G-a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      .     .+.........++..++ .+++++||++|.|+++|++.|...+
T Consensus       127 ~-----~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         127 Q-----EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             C-----CHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             c-----hhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            3     33444556667777776 5799999999999999999998776

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.36  E-value=2.5e-12  Score=131.68  Aligned_cols=159  Identities=12%  Similarity=0.051  Sum_probs=93.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHcCCC----CCCCCccceeEEEEEE------e-------ccccceEEEEEEcCCCcchhhHH
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEKND----TPKPTLALEYIYARKS------G-------KTVMKDICHLWELGSGTSRLEVA  100 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~~~----~~kptigvdY~f~~~~------g-------~~~~k~~l~IwDlpG~~~~~~Li  100 (890)
                      |+|+|.+++|||||+++|++...    ....+....+......      +       ......++.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999987311    1111111111111100      0       11222389999999987664433


Q ss_pred             hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEE
Q psy11649        101 SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLIL  180 (890)
Q Consensus       101 ~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIV  180 (890)
                      ...    +.  .+|++|+|+|+.+.-.-  .-...+..+.                                ..++|+||
T Consensus        88 ~~~----~~--~~D~~ilVvda~~g~~~--~~~~~~~~~~--------------------------------~~~~p~ii  127 (227)
T d1g7sa4          88 KRG----GA--LADLAILIVDINEGFKP--QTQEALNILR--------------------------------MYRTPFVV  127 (227)
T ss_dssp             CSS----SB--SCSEEEEEEETTTCCCH--HHHHHHHHHH--------------------------------HTTCCEEE
T ss_pred             hhc----cc--ccceEEEEEecccCccc--chhHHHHHhh--------------------------------cCCCeEEE
Confidence            322    22  59999999999885543  2222222222                                13689999


Q ss_pred             EeecccCCCCCCcch---------------hhhhHHHH----HHHHHH--------------cCCeEEEEeccCCCCHHH
Q psy11649        181 IGGKYDLFENLEPNK---------------KRIAVQCL----RYLAHV--------------NGASLLFHSSLDPGLVKR  227 (890)
Q Consensus       181 VgNK~Dl~~d~d~e~---------------r~~i~~~l----r~la~~--------------~Ga~l~etSAK~~~nId~  227 (890)
                      |+||+|+........               .......+    ..+...              ..++++++||++|.|+++
T Consensus       128 vlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~  207 (227)
T d1g7sa4         128 AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE  207 (227)
T ss_dssp             EEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHH
T ss_pred             EEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHH
Confidence            999999864211000               00011111    111111              014689999999999999


Q ss_pred             HHHHHHHHH
Q psy11649        228 TRDILNHYA  236 (890)
Q Consensus       228 Lk~~I~~~l  236 (890)
                      |.+.|..+.
T Consensus       208 Ll~~l~~l~  216 (227)
T d1g7sa4         208 LLTMLMGLA  216 (227)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998775

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.36  E-value=7.9e-12  Score=124.55  Aligned_cols=161  Identities=11%  Similarity=0.079  Sum_probs=98.7

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCcc--ceeEEEEEEe------------------ccccceEEEEE
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLA--LEYIYARKSG------------------KTVMKDICHLW   88 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptig--vdY~f~~~~g------------------~~~~k~~l~Iw   88 (890)
                      ..++|+++|..++|||||+++|++...     ....+++  ..|.+.....                  ......++.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            367999999999999999999997321     1111222  2222211110                  00011268999


Q ss_pred             EcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccc
Q psy11649         89 ELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDK  168 (890)
Q Consensus        89 DlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~  168 (890)
                      |+||+..|......-    .  ..+|++++|+|..+.... ......+..++.                           
T Consensus        84 DtPGh~~f~~~~~~~----~--~~~d~~ilvvda~~g~~~-~~t~e~~~~~~~---------------------------  129 (195)
T d1kk1a3          84 DAPGHEALMTTMLAG----A--SLMDGAILVIAANEPCPR-PQTREHLMALQI---------------------------  129 (195)
T ss_dssp             ECSSHHHHHHHHHHC----G--GGCSEEEEEEETTSCSSC-HHHHHHHHHHHH---------------------------
T ss_pred             ccchhhhhhHHhhcc----c--ccccccccccchhhhhhh-hhhHHHHHHHHH---------------------------
Confidence            999987664433322    1  149999999999986432 122222221111                           


Q ss_pred             ccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC---CeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        169 GLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       169 ~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G---a~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                           +++| +++|.||+|+.+   ..........+.++...++   ++++++||++|.|+++|.+.|..++
T Consensus       130 -----~~~~~iiv~inK~D~~d---~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         130 -----IGQKNIIIAQNKIELVD---KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             -----HTCCCEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             -----hcCccceeeeecccchh---hHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence                 1344 788999999863   1222233344455554443   6799999999999999999998765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.29  E-value=2.3e-11  Score=122.21  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=94.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-----CCCCCcc--ceeEEEEEE----------------e-----c--cccceE
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-----TPKPTLA--LEYIYARKS----------------G-----K--TVMKDI   84 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-----~~kptig--vdY~f~~~~----------------g-----~--~~~k~~   84 (890)
                      .++|+++|..++|||||+++|++...     .......  ..+......                .     .  .....+
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~   87 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR   87 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred             CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence            47999999999999999999997311     0000000  001000000                0     0  000126


Q ss_pred             EEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccc
Q psy11649         85 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  164 (890)
Q Consensus        85 l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~  164 (890)
                      +.+.|+||+..|.......      ...+|++|+|+|..+.-.- ......+..+                         
T Consensus        88 ~~iiD~PGH~df~~~~~~~------~~~ad~ailvVda~~gi~~-~~t~e~~~~~-------------------------  135 (205)
T d2qn6a3          88 ISFIDAPGHEVLMATMLSG------AALMDGAILVVAANEPFPQ-PQTREHFVAL-------------------------  135 (205)
T ss_dssp             EEEEECSCHHHHHHHHHHT------SSCCSEEEEEEETTSCSSC-HHHHHHHHHH-------------------------
T ss_pred             EEEeccchHHHHHhhhhcc------eeccccccccccccccccc-hhHHHHHHHH-------------------------
Confidence            8999999997774433222      1149999999999885321 1111111111                         


Q ss_pred             ccccccccCCCC-cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc---CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        165 HRDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN---GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       165 ~~d~~li~~l~I-PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~---Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                             ..+++ |+||+.||+|+..   .+...........+....   +++++++||++|.|+++|.+.|..++
T Consensus       136 -------~~~~i~~iIV~vNK~Dl~~---~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         136 -------GIIGVKNLIIVQNKVDVVS---KEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             -------HHTTCCCEEEEEECGGGSC---HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             -------HHcCCceeeeccccCCCcc---chHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence                   11244 8899999999963   112222233334443333   36799999999999999999998875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.7e-11  Score=115.41  Aligned_cols=59  Identities=15%  Similarity=0.185  Sum_probs=41.2

Q ss_pred             CCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHc--CCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        175 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN--GASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~--Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ..++++|+||+|+..   .+........+++....+  ..++++|||++|.|+++|++.|...+
T Consensus       127 ~~~~~~v~~k~D~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         127 NIAVLVLLTKADKLA---SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TCCEEEEEECGGGSC---HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccccchhhhhhccC---HHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            578999999999863   222222333333333333  24689999999999999999987764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.18  E-value=6.8e-11  Score=118.76  Aligned_cols=156  Identities=13%  Similarity=0.074  Sum_probs=98.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC-----C-------------CCCCCCccceeEEEEEEeccccceEEEEEEcCCCcch
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK-----N-------------DTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR   96 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~-----~-------------~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~   96 (890)
                      .++|+++|..++|||||+++|++.     .             .....+++++-.+...   ...+..+.+.|+||...|
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~---~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY---STAARHYAHTDCPGHADY   79 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE---ECSSCEEEEEECSSHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEE---EeceeeEEeecCcchHHH
Confidence            578999999999999999999851     0             1111233333222111   122348999999998776


Q ss_pred             hhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCC
Q psy11649         97 LEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPV  176 (890)
Q Consensus        97 ~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~I  176 (890)
                      ..-....    .  ..+|++|+|+|.++...-  .-...+..+.                                .+++
T Consensus        80 ~~~~~~~----~--~~aD~allVVda~~G~~~--QT~~~~~~a~--------------------------------~~~~  119 (196)
T d1d2ea3          80 VKNMITG----T--APLDGCILVVAANDGPMP--QTREHLLLAR--------------------------------QIGV  119 (196)
T ss_dssp             HHHHHHT----S--SCCSEEEEEEETTTCSCH--HHHHHHHHHH--------------------------------HTTC
T ss_pred             HHHHHHH----H--hhcCeEEEEEEcCCCCch--hHHHHHHHHH--------------------------------HhcC
Confidence            4333222    1  138999999999986552  2222221111                                1234


Q ss_pred             -cEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCC----------CCHHHHHHHHHHH
Q psy11649        177 -PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDP----------GLVKRTRDILNHY  235 (890)
Q Consensus       177 -PiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~----------~nId~Lk~~I~~~  235 (890)
                       |+||+.||+|+..+  .+....+..+++.+...+|     ++++++||++|          .++..|.+.|...
T Consensus       120 ~~iIv~iNK~D~~~~--~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         120 EHVVVYVNKADAVQD--SEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             CCEEEEEECGGGCSC--HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeccccccc--HHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence             78999999998631  2223445566777776665     56999999988          4777777776554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.12  E-value=4.9e-10  Score=114.53  Aligned_cols=150  Identities=13%  Similarity=0.052  Sum_probs=94.0

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCCCCC-----------------------------------CCCccceeEEEEEEe
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKNDTP-----------------------------------KPTLALEYIYARKSG   77 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~~~~-----------------------------------kptigvdY~f~~~~g   77 (890)
                      ....+|+++|..++|||||+.+|+...+..                                   ..+++++...  . .
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~--~-~   83 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY--R-Y   83 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE--E-E
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeE--E-E
Confidence            346889999999999999999996411100                                   0011111000  0 0


Q ss_pred             ccccceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy11649         78 KTVMKDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFE  157 (890)
Q Consensus        78 ~~~~k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~  157 (890)
                      ....+..+.++|+||...|..-...-      ...+|++|+|+|+.....-  .....+..                   
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g------~~~aD~ailVvda~~G~~~--Qt~e~~~~-------------------  136 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATG------ASTCDLAIILVDARYGVQT--QTRRHSYI-------------------  136 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHH------HTTCSEEEEEEETTTCSCH--HHHHHHHH-------------------
T ss_pred             EeccceEEEEEeccchhhhhhhhccc------cccCceEEEEeccccCccc--chHHHHHH-------------------
Confidence            11123379999999998774333222      0139999999999886542  22111111                   


Q ss_pred             cccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCC-----eEEEEeccCCCCHH
Q psy11649        158 HFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-----SLLFHSSLDPGLVK  226 (890)
Q Consensus       158 ~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga-----~l~etSAK~~~nId  226 (890)
                                   ...+++| +|++.||+|+.. .+.+....+..+++.+....+.     +++++||.+|.|+.
T Consensus       137 -------------~~~~gv~~iiv~vNK~D~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         137 -------------ASLLGIKHIVVAINKMDLNG-FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             -------------HHHTTCCEEEEEEECTTTTT-SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             -------------HHHcCCCEEEEEEEcccccc-ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                         1224666 788999999863 3334445666778888877654     57999999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.04  E-value=3.4e-10  Score=114.07  Aligned_cols=141  Identities=15%  Similarity=0.094  Sum_probs=88.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC------CCC--------C-----CCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK------NDT--------P-----KPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~------~~~--------~-----kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      .++|+++|..++|||||+++|+..      ...        +     ..+++++-.+.....   .+.+++|+||||...
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~---~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET---AKRHYSHVDCPGHAD   79 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC---SSCEEEEEECCCSGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe---CCeEEEEEeCCCchh
Confidence            478999999999999999999741      110        0     013444433332222   233799999999987


Q ss_pred             hhhHH-hhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         96 RLEVA-SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        96 ~~~Li-~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      |..-. ...+       .+|++|+|+|+++.... ...+-|. .+                                ...
T Consensus        80 f~~~~~~~~~-------~aD~avlVvda~~Gv~~-qt~~~~~-~~--------------------------------~~~  118 (204)
T d2c78a3          80 YIKNMITGAA-------QMDGAILVVSAADGPMP-QTREHIL-LA--------------------------------RQV  118 (204)
T ss_dssp             GHHHHHHHHT-------TCSSEEEEEETTTCCCH-HHHHHHH-HH--------------------------------HHT
T ss_pred             hHHHHHHHHH-------HCCEEEEEEECCCCCcH-HHHHHHH-HH--------------------------------HHc
Confidence            74433 2222       39999999999987664 2222222 11                                123


Q ss_pred             CCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccC
Q psy11649        175 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLD  221 (890)
Q Consensus       175 ~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~  221 (890)
                      ++| ++|+.||+|+.+  +.+....+..+++.+...++     ++++..|+..
T Consensus       119 gi~~iiv~iNK~D~~~--~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         119 GVPYIVVFMNKVDMVD--DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             TCCCEEEEEECGGGCC--CHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             CCCeEEEEEEecccCC--CHHHHHHHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            676 677899999863  11223445566776666554     4578877754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=5.5e-10  Score=107.26  Aligned_cols=111  Identities=16%  Similarity=0.134  Sum_probs=86.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ...+|+.+|+..+..+.+.  .+.    ....+++|+|++.+.++ +.+++|+..++++..                   
T Consensus        52 ~~~i~d~~g~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~-------------------  105 (164)
T d1z2aa1          52 RLMLWDTAGQEEFDAITKA--YYR----GAQACVLVFSTTDRESF-EAISSWREKVVAEVG-------------------  105 (164)
T ss_dssp             EEEEECCTTGGGTTCCCHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHHC-------------------
T ss_pred             eeeeeccCCccchhhhhhh--hhc----cCceEEEEEeccchhhh-hhcccccccccccCC-------------------
Confidence            3489999998776665554  222    23378999999999998 889999988765322                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        .+|+||||||+|+..+-     ..-...++.||.++|+..+.||+|
T Consensus       106 ----------------------------------~~~iilVgnK~Dl~~~~-----~v~~~~~~~~~~~~~~~~~e~Sak  146 (164)
T d1z2aa1         106 ----------------------------------DIPTALVQNKIDLLDDS-----CIKNEEAEGLAKRLKLRFYRTSVK  146 (164)
T ss_dssp             ----------------------------------SCCEEEEEECGGGGGGC-----SSCHHHHHHHHHHHTCEEEECBTT
T ss_pred             ----------------------------------CceEEEeeccCCcccce-----eeeehhhHHHHHHcCCEEEEeccC
Confidence                                              26899999999986421     122335678899999999999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.|++.++++|..++
T Consensus       147 ~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         147 EDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             TTBSSHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.1e-09  Score=101.32  Aligned_cols=113  Identities=14%  Similarity=0.221  Sum_probs=84.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+.+.  .+..    ..++|+|+|++.|.++ +.++.|++.++.+...                   
T Consensus        54 ~~~~d~~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~Sf-~~~~~~~~~~~~~~~~-------------------  107 (167)
T d1z08a1          54 LAIWDTAGQERFHALGPI--YYRD----SNGAILVYDITDEDSF-QKVKNWVKELRKMLGN-------------------  107 (167)
T ss_dssp             EEEEECCCC-------CC--SSTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHGG-------------------
T ss_pred             eeeeccCCcceecccchh--hccC----CceeEEEEeCCchhHH-Hhhhhhhhhccccccc-------------------
Confidence            479999999887776665  2332    2379999999999999 9999999866654432                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       ..|++|||||+|+..+-+     .-.+.++.||.++|+..+.||+|+
T Consensus       108 ---------------------------------~~~~ilvgnK~Dl~~~~~-----v~~~e~~~~a~~~~~~~~e~Sak~  149 (167)
T d1z08a1         108 ---------------------------------EICLCIVGNKIDLEKERH-----VSIQEAESYAESVGAKHYHTSAKQ  149 (167)
T ss_dssp             ---------------------------------GSEEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             ---------------------------------ccceeeeccccccccccc-----cchHHHHHHHHHcCCeEEEEecCC
Confidence                                             257899999999975322     113456789999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcC
Q psy11649        553 PGLVKRTRDILNHYAFS  569 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg  569 (890)
                      +.|++.++..|..+++.
T Consensus       150 ~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         150 NKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.5e-09  Score=102.25  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=89.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+.+|+.....+...  .+.    ....+++|+|++.+.++ +.+++|+..++.+...                   
T Consensus        51 ~~i~d~~g~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~i~~~~~~~~~~~~~-------------------  104 (164)
T d1yzqa1          51 LQLWDTAGQERFRSLIPS--YIR----DSAAAVVVYDITNVNSF-QQTTKWIDDVRTERGS-------------------  104 (164)
T ss_dssp             EEEEEECCSGGGGGGHHH--HHT----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-------------------
T ss_pred             eeecccCCcchhccchHH--Hhh----ccceEEEeeccccccch-hhhHhhHHHHHHhcCC-------------------
Confidence            489999999766655443  112    23489999999999998 8889998876653221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       .+|++|||||+|+-..-.     ...+.++.+|..+|+..|.||+|.
T Consensus       105 ---------------------------------~~~iilvgnK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~SAk~  146 (164)
T d1yzqa1         105 ---------------------------------DVIIMLVGNKTDLADKRQ-----VSIEEGERKAKELNVMFIETSAKA  146 (164)
T ss_dssp             ---------------------------------SSEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             ---------------------------------CceEEEEecccchhhhhh-----hhHHHHHHHHHHcCCEEEEecCCC
Confidence                                             378999999999864322     223567889999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCC
Q psy11649        553 PGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~  570 (890)
                      +.|++.+++.|...+.|.
T Consensus       147 g~~v~e~f~~i~~~l~g~  164 (164)
T d1yzqa1         147 GYNVKQLFRRVAAALPGM  164 (164)
T ss_dssp             CTTHHHHHHHHHHHSCCC
T ss_pred             CcCHHHHHHHHHHhhCCC
Confidence            999999999999999874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2e-09  Score=103.93  Aligned_cols=111  Identities=18%  Similarity=0.191  Sum_probs=79.5

Q ss_pred             EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH  473 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~  473 (890)
                      .+|+.+|+..+..+.+.  -+..    .-++|+|+|+|+|.++ +.+..|+..++.+...                    
T Consensus        51 ~i~D~~g~e~~~~~~~~--~~~~----~d~~ilv~d~t~~~s~-~~~~~~~~~i~~~~~~--------------------  103 (168)
T d2gjsa1          51 MVYDIWEQDGGRWLPGH--CMAM----GDAYVIVYSVTDKGSF-EKASELRVQLRRARQT--------------------  103 (168)
T ss_dssp             EEEECC-------CHHH--HHTS----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHCC---------------------
T ss_pred             eeeecccccccceeccc--chhh----hhhhceeccccccccc-cccccccchhhccccc--------------------
Confidence            79999998776665544  1221    2378999999999998 8899999887653211                    


Q ss_pred             ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649        474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP  553 (890)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~  553 (890)
                                                     ..+|+||||||+|+...-+     .-...++.||..+|+..+.||+|++
T Consensus       104 -------------------------------~~~piilvgnK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~~  147 (168)
T d2gjsa1         104 -------------------------------DDVPIILVGNKSDLVRSRE-----VSVDEGRACAVVFDCKFIETSAALH  147 (168)
T ss_dssp             --------------------------------CCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTSEEEECBTTTT
T ss_pred             -------------------------------ccceEEEeecccchhhhcc-----hhHHHHHHHHHhcCCEEEEEeCCCC
Confidence                                           1389999999999864221     1134467899999999999999999


Q ss_pred             hhHHHHHHHHhhhh
Q psy11649        554 GLVKRTRDILNHYA  567 (890)
Q Consensus       554 ~n~~~l~kyi~hr~  567 (890)
                      .|++.++..|.+++
T Consensus       148 ~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         148 HNVQALFEGVVRQI  161 (168)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            99999999998865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.6e-09  Score=99.69  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=85.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|...+..+...  .+.    ..-.+++|+|++.|.++ +.++.|+..+.++...                   
T Consensus        54 l~i~d~~g~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  107 (167)
T d1xtqa1          54 LQLVDTAGQDEYSIFPQT--YSI----DINGYILVYSVTSIKSF-EVIKVIHGKLLDMVGK-------------------  107 (167)
T ss_dssp             EEEEECCCCCTTCCCCGG--GTS----SCCEEEEEEETTCHHHH-HHHHHHHHHHHHHHCS-------------------
T ss_pred             eeecccccccccccccch--hhh----hhhhhhhhcccchhhhh-hhhhhhhhhhhhcccc-------------------
Confidence            378999999877766555  222    23379999999999999 8999999887664432                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      ..+|++|||||+|+...-+     .-.+.++.||..+|+..|.||+|+
T Consensus       108 --------------------------------~~~piilvgnK~Dl~~~r~-----v~~~~~~~~a~~~~~~~~e~Sak~  150 (167)
T d1xtqa1         108 --------------------------------VQIPIMLVGNKKDLHMERV-----ISYEEGKALAESWNAAFLESSAKE  150 (167)
T ss_dssp             --------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEECCTTC
T ss_pred             --------------------------------cccceeeeccccccccccc-----hhHHHHHHHHHHcCCEEEEEecCC
Confidence                                            1379999999999864311     113456788999999999999999


Q ss_pred             hhhHHHHHHHHhhh
Q psy11649        553 PGLVKRTRDILNHY  566 (890)
Q Consensus       553 ~~n~~~l~kyi~hr  566 (890)
                      +.|++.+++.|...
T Consensus       151 ~~~v~~~f~~li~~  164 (167)
T d1xtqa1         151 NQTAVDVFRRIILE  164 (167)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999888654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.9e-09  Score=101.28  Aligned_cols=112  Identities=17%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+.+.  .+.    ...++|+|+|++++.++ +.++.|...+..+..                    
T Consensus        56 ~~i~D~~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  108 (174)
T d2bmea1          56 LQIWDTAGQERFRSVTRS--YYR----GAAGALLVYDITSRETY-NALTNWLTDARMLAS--------------------  108 (174)
T ss_dssp             EEEEEECCSGGGHHHHHT--TST----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCchhhhhhHHH--Hhh----hCCEEEEEEecccchhH-HHHhhhhcccccccC--------------------
Confidence            589999998777766665  222    23389999999999988 888888887544211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+||||+|+|+..+-+     ...+.++.||..++++.+.||+|.
T Consensus       109 --------------------------------~~~piivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~e~Sak~  151 (174)
T d2bmea1         109 --------------------------------QNIVIILCGNKKDLDADRE-----VTFLEASRFAQENELMFLETSALT  151 (174)
T ss_dssp             --------------------------------TTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             --------------------------------CceEEEEEEecccccchhc-----hhhhHHHHHHHhCCCEEEEeeCCC
Confidence                                            1489999999999864332     223456788999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|.+.++
T Consensus       152 ~~gi~e~f~~l~~~i~  167 (174)
T d2bmea1         152 GENVEEAFVQCARKIL  167 (174)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999998876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.80  E-value=6.5e-09  Score=99.85  Aligned_cols=111  Identities=10%  Similarity=0.136  Sum_probs=86.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|+.....+.+.  -+..    .-.+++|+|++.|.++ +.++.|+..++....                    
T Consensus        55 ~~i~d~~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  107 (167)
T d1z0ja1          55 FLIWDTAGLERFRALAPM--YYRG----SAAAIIVYDITKEETF-STLKNWVRELRQHGP--------------------  107 (167)
T ss_dssp             EEEEEECCSGGGGGGTHH--HHTT----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred             eeeeecCCchhhhHHHHH--HHhh----ccceEEEeeechhhhh-hhHHHhhhhhhhccC--------------------
Confidence            469999999877776665  2222    2378999999999998 889999876544211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -..|++|||+|+|+-.+     .......++.||..+|+..+.||+|+
T Consensus       108 --------------------------------~~~~iilvgnK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~SAk~  150 (167)
T d1z0ja1         108 --------------------------------PSIVVAIAGNKCDLTDV-----REVMERDAKDYADSIHAIFVETSAKN  150 (167)
T ss_dssp             --------------------------------TTSEEEEEEECTTCGGG-----CCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             --------------------------------CcceEEEecccchhccc-----cchhHHHHHHHHHHcCCEEEEEecCC
Confidence                                            03689999999998532     22334567889999999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|..++
T Consensus       151 ~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         151 AININELFIEISRRI  165 (167)
T ss_dssp             TBSHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999988775

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=1.2e-08  Score=112.72  Aligned_cols=160  Identities=13%  Similarity=0.074  Sum_probs=85.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC----CCCCCCc---cceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN----DTPKPTL---ALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSF  106 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~----~~~kpti---gvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~  106 (890)
                      ..+|+|+|.+|||||||+|.|+|..    .....++   +.+.    ..........+.+|||||......-...+ ...
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~----~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER----HPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC----EEEECSSCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee----eeeeccCCCeEEEEeCCCcccccccHHHHHHHh
Confidence            5899999999999999999999832    1111111   1110    01111112258899999975432222222 111


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      ...  .+|++|++.|.. ...   +-....+.+++                                .+.|+++|.||+|
T Consensus       132 ~~~--~~d~~l~~~~~~-~~~---~d~~l~~~l~~--------------------------------~~k~~~~V~nK~D  173 (400)
T d1tq4a_         132 KFY--EYDFFIIISATR-FKK---NDIDIAKAISM--------------------------------MKKEFYFVRTKVD  173 (400)
T ss_dssp             TGG--GCSEEEEEESSC-CCH---HHHHHHHHHHH--------------------------------TTCEEEEEECCHH
T ss_pred             hhh--cceEEEEecCCC-CCH---HHHHHHHHHHH--------------------------------cCCCEEEEEeCcc
Confidence            111  378888887743 221   22222222221                                3689999999999


Q ss_pred             CCCCC------CcchhhhhHHHHHHHH----HHcCC---eEEEEeccC--CCCHHHHHHHHHHHH
Q psy11649        187 LFENL------EPNKKRIAVQCLRYLA----HVNGA---SLLFHSSLD--PGLVKRTRDILNHYA  236 (890)
Q Consensus       187 l~~d~------d~e~r~~i~~~lr~la----~~~Ga---~l~etSAK~--~~nId~Lk~~I~~~l  236 (890)
                      .....      ....+....+.++.-+    ...|.   +++.+|..+  ..++.+|.+.+...+
T Consensus       174 ~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L  238 (400)
T d1tq4a_         174 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  238 (400)
T ss_dssp             HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             cccchhhhcccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence            63100      0001111122222222    23333   477888754  448899998888776

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.7e-09  Score=101.53  Aligned_cols=112  Identities=17%  Similarity=0.222  Sum_probs=86.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+.+|+..+..+.+.  .+.    ...++++|+|++++.++ +.+++|...++....                    
T Consensus        55 l~i~D~~g~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  107 (166)
T d1z0fa1          55 LQIWDTAGQERFRAVTRS--YYR----GAAGALMVYDITRRSTY-NHLSSWLTDARNLTN--------------------  107 (166)
T ss_dssp             EEEEECTTGGGTCHHHHH--HHH----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEeccCCchhHHHHHHH--Hhc----CCcEEEEEeccCchHHH-HHHHHHHHHHHhhcc--------------------
Confidence            589999998777766655  222    22378999999999987 888888866543100                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+||||+|+|+...-.     ...+.++.+|..+|+..+.||+|.
T Consensus       108 --------------------------------~~~~iilvgnK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~Sakt  150 (166)
T d1z0fa1         108 --------------------------------PNTVIILIGNKADLEAQRD-----VTYEEAKQFAEENGLLFLEASAKT  150 (166)
T ss_dssp             --------------------------------TTCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             --------------------------------ccceEEEEcccccchhhcc-----cHHHHHHHHHHHcCCEEEEEeCCC
Confidence                                            0368999999999853222     223467889999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.||+.++..|...+|
T Consensus       151 g~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         151 GENVEDAFLEAAKKIY  166 (166)
T ss_dssp             CTTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999999887

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.7e-09  Score=100.16  Aligned_cols=112  Identities=12%  Similarity=0.118  Sum_probs=86.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+.+|...+..+.+.  -+..    ..++|+|+|++.+.++ +.+++|+..+......                   
T Consensus        56 l~~~d~~g~~~~~~~~~~--~~~~----~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  109 (173)
T d2fn4a1          56 LDILDTAGQEEFGAMREQ--YMRA----GHGFLLVFAINDRQSF-NEVGKLFTQILRVKDR-------------------  109 (173)
T ss_dssp             EEEEECCCTTTTSCCHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHTS-------------------
T ss_pred             eeccccccccccccccch--hhcc----ceeeeeeccccccccc-chhhhhhHHHHHHhcc-------------------
Confidence            488999999777766555  2222    3389999999999999 8899998776543221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+||||||+|+...-.     .....++.||..+|+..|.||+|+
T Consensus       110 --------------------------------~~~p~ilvgnK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~Sak~  152 (173)
T d2fn4a1         110 --------------------------------DDFPVVLVGNKADLESQRQ-----VPRSEASAFGASHHVAYFEASAKL  152 (173)
T ss_dssp             --------------------------------SCCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             --------------------------------CCCceEEEEEeechhhccc-----cchhhhhHHHHhcCCEEEEEeCCC
Confidence                                            1379999999999863211     223457899999999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|...+
T Consensus       153 g~gv~e~f~~l~~~i  167 (173)
T d2fn4a1         153 RLNVDEAFEQLVRAV  167 (173)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.1e-08  Score=98.88  Aligned_cols=113  Identities=14%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+.+.  -+.    ...++++|+|++.+.++ +++++|+..+.++...                   
T Consensus        54 ~~i~d~~g~~~~~~~~~~--~~~----~~~~~llv~d~~d~~Sf-~~~~~~~~~i~~~~~~-------------------  107 (169)
T d1x1ra1          54 LDVLDTAGQEEFSAMREQ--YMR----TGDGFLIVYSVTDKASF-EHVDRFHQLILRVKDR-------------------  107 (169)
T ss_dssp             EEEEECCSCGGGCSSHHH--HHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTS-------------------
T ss_pred             ccccccccccccccchhh--hhh----hccEEEEecccccchhh-hccchhhHHHHhhccc-------------------
Confidence            389999999777665443  122    23389999999999998 8899998876553321                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      .++|+||||||+|+...-+     .-.+.++.||..+|+..|.||+|+
T Consensus       108 --------------------------------~~~p~ilvgnK~Dl~~~~~-----v~~e~~~~~~~~~~~~~~e~Sak~  150 (169)
T d1x1ra1         108 --------------------------------ESFPMILVANKVDLMHLRK-----VTRDQGKEMATKYNIPYIETSAKD  150 (169)
T ss_dssp             --------------------------------SCCCEEEEEECTTCSTTCC-----SCHHHHHHHHHHHTCCEEEEBCSS
T ss_pred             --------------------------------cCccEEEEecccchhhhce-----eehhhHHHHHHHcCCEEEEEcCCC
Confidence                                            1489999999999874322     123456789999999999999998


Q ss_pred             h-hhHHHHHHHHhhhhc
Q psy11649        553 P-GLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~-~n~~~l~kyi~hr~f  568 (890)
                      + .|++.++..|.+.++
T Consensus       151 ~~~nV~~~F~~l~~~i~  167 (169)
T d1x1ra1         151 PPLNVDKTFHDLVRVIR  167 (169)
T ss_dssp             SCBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            6 599999999988764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.76  E-value=9.9e-09  Score=104.35  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=91.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---------------------------------CCCCCCccceeEEEEEEecccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---------------------------------DTPKPTLALEYIYARKSGKTVM   81 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---------------------------------~~~kptigvdY~f~~~~g~~~~   81 (890)
                      ..+|+++|.-++|||||+.+|+...                                 .....++.++..+...   ...
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~---~~~   79 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF---ETK   79 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE---ECS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEE---ecC
Confidence            5799999999999999999985310                                 0111122222111111   112


Q ss_pred             ceEEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q psy11649         82 KDICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFR  160 (890)
Q Consensus        82 k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~  160 (890)
                      +..+++.|+||+..|...+... +       -+|++|+|+|+.+-..-  .-..+....++++.-               
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~-------~~D~allVVda~~G~~~--~t~~~~~qt~e~l~~---------------  135 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGAS-------QADAAILVVSAKKGEYE--AGMSVEGQTREHIIL---------------  135 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSS-------CCSEEEEEEECSTTHHH--HHHSTTCHHHHHHHH---------------
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHH-------hhceEEEEEecccCccc--ccccccchhHHHHHH---------------
Confidence            3489999999998886555444 3       38999999999874211  111111122222211               


Q ss_pred             ccccccccccccCCCC-cEEEEeecccCCC-CCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHH
Q psy11649        161 TADEHRDKGLIRTFPV-PLILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVK  226 (890)
Q Consensus       161 ~~~~~~d~~li~~l~I-PiIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId  226 (890)
                                ...+++ ++|++.||+|+.. +.+.+..+.+...+..+...++     +.++++||..|.|+.
T Consensus       136 ----------~~~~~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         136 ----------AKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             ----------HHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             ----------HHHhCCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence                      111234 5888999999863 2333334555666777767664     468999999999884

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.9e-08  Score=96.93  Aligned_cols=112  Identities=18%  Similarity=0.178  Sum_probs=84.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+.+.  .+.    ....+++|+|++.+.++ +++.+|...+.....                    
T Consensus        56 l~i~Dt~G~e~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  108 (171)
T d2ew1a1          56 LQIWDTAGQERFRSITQS--YYR----SANALILTYDITCEESF-RCLPEWLREIEQYAS--------------------  108 (171)
T ss_dssp             EEEEEECCSGGGHHHHGG--GST----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--HHh----ccceEEEeeecccchhh-hhhhhhhhhhccccc--------------------
Confidence            589999998666655554  222    23388999999999998 788888766533100                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+||||||+|.....+-     ..+.++.||..+|+..+.||+|.
T Consensus       109 --------------------------------~~~~~ilvgnK~D~~~~~~v-----~~~~~~~~~~~~~~~~~~~SAkt  151 (171)
T d2ew1a1         109 --------------------------------NKVITVLVGNKIDLAERREV-----SQQRAEEFSEAQDMYYLETSAKE  151 (171)
T ss_dssp             --------------------------------TTCEEEEEEECGGGGGGCSS-----CHHHHHHHHHHHTCCEEECCTTT
T ss_pred             --------------------------------ccccEEEEEeecccccccch-----hhhHHHHHHHhCCCEEEEEccCC
Confidence                                            13789999999998753322     12346778999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|.+++.
T Consensus       152 g~gV~e~f~~l~~~l~  167 (171)
T d2ew1a1         152 SDNVEKLFLDLACRLI  167 (171)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999888764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.6e-09  Score=100.71  Aligned_cols=114  Identities=18%  Similarity=0.292  Sum_probs=85.5

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+++|+.+|+..+..+...  .+    -...++|+|+|++.|.++ +.+++|+..++.+...                  
T Consensus        54 ~~~i~d~~g~e~~~~~~~~--~~----~~~~~~i~v~d~~~~~S~-~~~~~~~~~i~~~~~~------------------  108 (175)
T d2f9la1          54 KAQIWDTAGQERYRRITSA--YY----RGAVGALLVYDIAKHLTY-ENVERWLKELRDHADS------------------  108 (175)
T ss_dssp             EEEEEECSSGGGTTCCCHH--HH----TTCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSCT------------------
T ss_pred             EEEecccCCcHHHHHHHHH--Hh----hccCeEEEEEECCCcccc-hhHHHHHHHHHHhcCC------------------
Confidence            3489999998655543333  11    123379999999999999 7788888877653221                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                        ++|++|||||+|+...-.     ......+.++..+++..+.||++
T Consensus       109 ----------------------------------~~piilvgnK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~e~Sa~  149 (175)
T d2f9la1         109 ----------------------------------NIVIMLVGNKSDLRHLRA-----VPTDEARAFAEKNNLSFIETSAL  149 (175)
T ss_dssp             ----------------------------------TCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCEEEECCTT
T ss_pred             ----------------------------------CCcEEEEEeeeccccccc-----chHHHHHHhhcccCceEEEEecC
Confidence                                              489999999999974311     22344567788899999999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.+++.|...+|.
T Consensus       150 ~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         150 DSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999988887764

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=3.7e-08  Score=101.39  Aligned_cols=150  Identities=13%  Similarity=0.030  Sum_probs=92.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC---C-------------------C-----------CCCCCccceeEEEEEEecccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK---N-------------------D-----------TPKPTLALEYIYARKSGKTVM   81 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~---~-------------------~-----------~~kptigvdY~f~~~~g~~~~   81 (890)
                      .++|+++|-..+|||||+.+|+..   .                   .           ..+.+++++..+....   ..
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~---~~   82 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE---TP   82 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE---CS
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEec---cC
Confidence            479999999999999999999631   0                   0           0112333332221221   12


Q ss_pred             ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCc-----h-HHHHHHHHHHHHHHHhhhhhhhhhccc
Q psy11649         82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNS-----L-WTEAETFLAKFRAIFESNESVREKRGS  155 (890)
Q Consensus        82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S-----~-~~~L~~wlq~I~e~~~~ll~~~~~~~~  155 (890)
                      +.+++|.|+||+..|..-+..-      ...+|++|+|+|.++..-     . ....+.|.-                  
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g------~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~------------------  138 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITG------TSQADCAILIIAGGVGEFEAGISKDGQTREHALL------------------  138 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHS------SSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHH------------------
T ss_pred             CEEEEEEECCCcHHHHHHHHHH------HHHhCEEEEEEECCCCccccccCchHhHHHHHHH------------------
Confidence            3489999999998874433322      113999999999876310     0 011111211                  


Q ss_pred             cccccccccccccccccCCCCc-EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcC-----CeEEEEeccCCCCHHH
Q psy11649        156 FEHFRTADEHRDKGLIRTFPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLLFHSSLDPGLVKR  227 (890)
Q Consensus       156 l~~~~~~~~~~d~~li~~l~IP-iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~G-----a~l~etSAK~~~nId~  227 (890)
                                     ...+++| +|++.||+|+.. .+.+....+..++..+....+     ++++.+|+..|.|+-+
T Consensus       139 ---------------~~~~gv~~iiv~iNKmD~~~-~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         139 ---------------AFTLGVRQLIVAVNKMDSVK-WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             ---------------HHHTTCCEEEEEEECGGGGT-TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             ---------------HHHcCCCeEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence                           1224676 788999999863 233334455666777777665     4589999999988654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.5e-09  Score=99.99  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=84.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+...  .+..    .-++|+|+|++.|.++ +.+..|+..+.++...                   
T Consensus        52 l~~~d~~g~~~~~~~~~~--~~~~----a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  105 (171)
T d2erxa1          52 LQITDTTGSHQFPAMQRL--SISK----GHAFILVYSITSRQSL-EELKPIYEQICEIKGD-------------------  105 (171)
T ss_dssp             EEEEECCSCSSCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HTTHHHHHHHHHHHC--------------------
T ss_pred             eccccccccccccccccc--cccc----eeEEEEEeecccccch-hcccchhhhhhhhhcc-------------------
Confidence            478999999766655444  1221    2379999999999998 8899998877654221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     .-++|+||||||+|+...-+     .-...++.||..+|+..+.||+|.
T Consensus       106 -------------------------------~~~~piilVgnK~Dl~~~~~-----v~~~e~~~~~~~~~~~~~e~Sak~  149 (171)
T d2erxa1         106 -------------------------------VESIPIMLVGNKCDESPSRE-----VQSSEAEALARTWKCAFMETSAKL  149 (171)
T ss_dssp             ---------------------------------CCCEEEEEECGGGGGGCC-----SCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             -------------------------------CCCCcEEEEeeccccccccc-----ccHHHHHHHHHHcCCeEEEEcCCC
Confidence                                           01489999999999863211     112345678999999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|.+.+
T Consensus       150 ~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         150 NHNVKELFQELLNLE  164 (171)
T ss_dssp             TBSHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.3e-08  Score=95.81  Aligned_cols=113  Identities=14%  Similarity=0.186  Sum_probs=88.8

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+.+|...+....+.  .+.    ...++++|+|++.+.++ +.+++|+..+.++...                  
T Consensus        52 ~l~~~d~~~~~~~~~~~~~--~~~----~~~~~iiv~d~~~~~s~-~~~~~~~~~i~~~~~~------------------  106 (166)
T d1ctqa_          52 LLDILDTAGQEEYSAMRDQ--YMR----TGEGFLCVFAINNTKSF-EDIHQYREQIKRVKDS------------------  106 (166)
T ss_dssp             EEEEEEECCCGGGHHHHHH--HHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC------------------
T ss_pred             eeeeeeccCccccccchhh--hhh----cccccceeecccccccH-HHHHHHHHHHHHhcCC------------------
Confidence            4589999999777665554  122    23389999999999998 8899999888775432                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|+||||+|+|+-...      ...+.++.||..+|+..|.||+|
T Consensus       107 ---------------------------------~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~e~Sak  147 (166)
T d1ctqa_         107 ---------------------------------DDVPMVLVGNKCDLAART------VESRQAQDLARSYGIPYIETSAK  147 (166)
T ss_dssp             ---------------------------------SSCCEEEEEECTTCSCCC------SCHHHHHHHHHHHTCCEEECCTT
T ss_pred             ---------------------------------CCCeEEEEeccccccccc------ccHHHHHHHHHHhCCeEEEEcCC
Confidence                                             148999999999985422      12345688999999999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++.+|..++.
T Consensus       148 ~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         148 TRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999987763

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.5e-08  Score=95.48  Aligned_cols=112  Identities=18%  Similarity=0.174  Sum_probs=84.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|+..+..+...  ....    .-++++|+|++.+.++ +.+.+|+..+......                   
T Consensus        53 l~~~d~~g~~~~~~~~~~--~~~~----a~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  106 (167)
T d1kaoa_          53 LEILDTAGTEQFASMRDL--YIKN----GQGFILVYSLVNQQSF-QDIKPMRDQIIRVKRY-------------------  106 (167)
T ss_dssp             EEEEECCCTTCCHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHTTT-------------------
T ss_pred             eccccCCCccccccchHH--Hhhc----ccceeeeeeecchhhh-hhhhchhhhhhhhccC-------------------
Confidence            488999998777665554  1221    2379999999999998 8888888765442211                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+||||||+|+...-..     ....++.+|..+|+..|.||+|+
T Consensus       107 --------------------------------~~~piilvgnK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~e~Sak~  149 (167)
T d1kaoa_         107 --------------------------------EKVPVILVGNKVDLESEREV-----SSSEGRALAEEWGCPFMETSAKS  149 (167)
T ss_dssp             --------------------------------SCCCEEEEEECGGGGGGCCS-----CHHHHHHHHHHHTSCEEEECTTC
T ss_pred             --------------------------------CCCCEEEEEEccchhhcccc-----hHHHHHHHHHHcCCeEEEECCCC
Confidence                                            13799999999998743221     12457888999999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|..++
T Consensus       150 g~~i~e~f~~i~~~i  164 (167)
T d1kaoa_         150 KTMVDELFAEIVRQM  164 (167)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999988765

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.72  E-value=1e-07  Score=99.68  Aligned_cols=109  Identities=14%  Similarity=0.050  Sum_probs=70.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC------CC-----C---------CCCccceeEEEEEEeccccceEEEEEEcCCCcc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN------DT-----P---------KPTLALEYIYARKSGKTVMKDICHLWELGSGTS   95 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~------~~-----~---------kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~   95 (890)
                      .+|+|+|..++|||||+.+|+...      +.     .         ..++++.-.+....   ..+.+++++||||...
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~---~~~~~~n~iDtPGh~d   79 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL---FRGHRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE---ETTEEEEEEECCCSGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccc---ccccceeEEccCchhh
Confidence            479999999999999999996411      00     0         01112221111111   1234799999999988


Q ss_pred             hhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCC
Q psy11649         96 RLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTF  174 (890)
Q Consensus        96 ~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l  174 (890)
                      |..-.... +.       +|++|+|+|..+.-.. .....|. .+.+                                .
T Consensus        80 F~~e~~~al~~-------~D~avlvvda~~Gv~~-~t~~~~~-~~~~--------------------------------~  118 (267)
T d2dy1a2          80 FVGEIRGALEA-------ADAALVAVSAEAGVQV-GTERAWT-VAER--------------------------------L  118 (267)
T ss_dssp             GHHHHHHHHHH-------CSEEEEEEETTTCSCH-HHHHHHH-HHHH--------------------------------T
T ss_pred             hhhhhhhhhcc-------cCceEEEeeccCCccc-hhHHHHH-hhhh--------------------------------c
Confidence            85544444 33       8999999999987664 3333333 2222                                2


Q ss_pred             CCcEEEEeecccCC
Q psy11649        175 PVPLILIGGKYDLF  188 (890)
Q Consensus       175 ~IPiIVVgNK~Dl~  188 (890)
                      ++|.+++.||+|..
T Consensus       119 ~~p~~i~iNk~D~~  132 (267)
T d2dy1a2         119 GLPRMVVVTKLDKG  132 (267)
T ss_dssp             TCCEEEEEECGGGC
T ss_pred             cccccccccccccc
Confidence            68999999999974

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=98.72  E-value=9.8e-09  Score=99.03  Aligned_cols=112  Identities=15%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             EEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEH  473 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~  473 (890)
                      ++|+.+|...+..+.+.  .+..    ...+++|+|++.+.++ +.+..|+..+.+....                    
T Consensus        55 ~i~d~~g~~~~~~~~~~--~~~~----~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~--------------------  107 (168)
T d1u8za_          55 DILDTAGQEDYAAIRDN--YFRS----GEGFLCVFSITEMESF-AATADFREQILRVKED--------------------  107 (168)
T ss_dssp             EEEECCC---CHHHHHH--HHHH----CSEEEEEEETTCHHHH-HHHHHHHHHHHHHHCC--------------------
T ss_pred             cccccccccchhhhhhh--cccc----cceeEEEeeccchhhh-hhHHHHHHHHHHhhCC--------------------
Confidence            78999999777666555  2221    2378999999999998 8999999877552210                    


Q ss_pred             ccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCCh
Q psy11649        474 RDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDP  553 (890)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~  553 (890)
                                                     -++|++|||||+|+...     ...-.+.++.||..+|+..|.||+|++
T Consensus       108 -------------------------------~~~piiivgnK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sak~g  151 (168)
T d1u8za_         108 -------------------------------ENVPFLLVGNKSDLEDK-----RQVSVEEAKNRADQWNVNYVETSAKTR  151 (168)
T ss_dssp             -------------------------------TTSCEEEEEECGGGGGG-----CCSCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred             -------------------------------CCCcEEEEecccccccc-----ccccHHHHHHHHHHcCCeEEEEcCCCC
Confidence                                           14899999999998532     111234568889999999999999999


Q ss_pred             hhHHHHHHHHhhhhc
Q psy11649        554 GLVKRTRDILNHYAF  568 (890)
Q Consensus       554 ~n~~~l~kyi~hr~f  568 (890)
                      .|++.++..|...++
T Consensus       152 ~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         152 ANVDKVFFDLMREIR  166 (168)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999887764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.69  E-value=2.1e-08  Score=103.54  Aligned_cols=158  Identities=16%  Similarity=0.010  Sum_probs=80.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCCC---------------------------------CCCCccceeEEEEEEecccc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKNDT---------------------------------PKPTLALEYIYARKSGKTVM   81 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~~---------------------------------~kptigvdY~f~~~~g~~~~   81 (890)
                      .++|+++|-.++|||||+.+|+...+.                                 ...++.++....   .....
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~---~~~~~  100 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRA---YFETE  100 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CC---EEECS
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccc---ccccc
Confidence            568999999999999999999531100                                 000111110000   01112


Q ss_pred             ceEEEEEEcCCCcchhhHHhhhhccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccc
Q psy11649         82 KDICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRT  161 (890)
Q Consensus        82 k~~l~IwDlpG~~~~~~Li~~~r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~  161 (890)
                      ...+.+.|+||+..|......-   ..   -+|++|+|+|..+..-- .... .....++++.-                
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g---~~---~aD~ailVVda~~G~~~-~~~~-~~~QT~e~l~l----------------  156 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMING---AS---QADIGVLVISARRGEFE-AGFE-RGGQTREHAVL----------------  156 (245)
T ss_dssp             SEEEEECCCCC--------------TT---SCSEEEEEEECSTTHHH-HTTS-TTCCHHHHHHH----------------
T ss_pred             cceeeeecccccccchhhhhhh---hh---hhcceeeEEEcCCCccC-Cccc-cccchHHHHHH----------------
Confidence            2379999999997764433322   01   39999999999863100 0000 00001111110                


Q ss_pred             cccccccccccCCCCc-EEEEeecccCCC-CCCcchhhhhHHHHHHHHHHc-------CCeEEEEeccCCCCHHHH
Q psy11649        162 ADEHRDKGLIRTFPVP-LILIGGKYDLFE-NLEPNKKRIAVQCLRYLAHVN-------GASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       162 ~~~~~d~~li~~l~IP-iIVVgNK~Dl~~-d~d~e~r~~i~~~lr~la~~~-------Ga~l~etSAK~~~nId~L  228 (890)
                               ...+++| ++++.||+|+.. +.+++..+.+..++..+....       .++++++||++|.|+.++
T Consensus       157 ---------~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~  223 (245)
T d1r5ba3         157 ---------ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  223 (245)
T ss_dssp             ---------HHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             ---------HHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence                     1123565 789999999853 233222333444455444433       247999999999999765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.8e-08  Score=98.67  Aligned_cols=116  Identities=20%  Similarity=0.220  Sum_probs=83.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|+..+..+.+.  .+..    ..++++|+|++.|.++-+..+.|...++.+..                    
T Consensus        59 l~i~D~~g~e~~~~~~~~--~~~~----a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~--------------------  112 (185)
T d2atxa1          59 LGLYDTAGQEDYDRLRPL--SYPM----TDVFLICFSVVNPASFQNVKEEWVPELKEYAP--------------------  112 (185)
T ss_dssp             EEEECCCCSSSSTTTGGG--GCTT----CSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--------------------
T ss_pred             eecccccccchhhhhhhh--cccc----cceeeeccccchHHHHHHHHHHHHHHHHhcCC--------------------
Confidence            489999999777766555  2232    34899999999999985555666666654311                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-------HHHHHHHHHHHHHHHcCCce
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-------KKRIAVQCLRYLAHVNGASL  545 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-------~~d~Iq~~lR~fcl~yGAsL  545 (890)
                                                       .+|+||||||+|+..+....       ++..-....+.+|.++|+.-
T Consensus       113 ---------------------------------~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1         113 ---------------------------------NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             ---------------------------------TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             ---------------------------------CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence                                             27899999999987422111       11123456788999999765


Q ss_pred             eE-eccCChhhHHHHHHHHhhhh
Q psy11649        546 LF-HSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       546 ~f-tS~K~~~n~~~l~kyi~hr~  567 (890)
                      +| ||+|++.|++.++..+...+
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHH
Confidence            55 89999999999998887665

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=2.2e-08  Score=96.44  Aligned_cols=112  Identities=17%  Similarity=0.226  Sum_probs=82.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+.+|+..+..+.+.  .+..    ...+|+|+|++.|.++ +.+.+|...++.+..                    
T Consensus        56 l~~wDt~G~e~~~~~~~~--~~~~----ad~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  108 (169)
T d3raba_          56 LQIWDTAGQERYRTITTA--YYRG----AMGFILMYDITNEESF-NAVQDWSTQIKTYSW--------------------  108 (169)
T ss_dssp             EEEEEECCSGGGHHHHHT--TTTT----CCEEEEEEETTCHHHH-HTHHHHHHHHHHHCC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--HHhc----CCEEEEEEECccchhh-hhhhhhhhhhhcccC--------------------
Confidence            689999998776665555  2222    2379999999999988 777777754332110                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+||+|||+|+|.-...+     .-++.++.||..+|+..+.||+|.
T Consensus       109 --------------------------------~~~~iivv~nK~D~~~~~~-----v~~~~~~~~~~~~~~~~~e~Sak~  151 (169)
T d3raba_         109 --------------------------------DNAQVLLVGNKCDMEDERV-----VSSERGRQLADHLGFEFFEASAKD  151 (169)
T ss_dssp             --------------------------------SCCEEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             --------------------------------CcceEEEEEeecccccccc-----cchhhhHHHHHHcCCEEEEecCCC
Confidence                                            1378999999999753222     112456678999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|...++
T Consensus       152 g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         152 NINVKQTFERLVDVIC  167 (169)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999987764

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=7.9e-08  Score=100.95  Aligned_cols=133  Identities=12%  Similarity=0.019  Sum_probs=85.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC--------C------------CCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND--------T------------PKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~--------~------------~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      -.+|+++|..++|||||+.+|+...+        .            ...++++.-.+...   ...+.+++|+||||..
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~---~~~~~~~n~iDtPG~~   82 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC---FWKDHRINIIDAPGHV   82 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEE---EETTEEEEEECCCSSS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeee---ccCCeEEEEecCCchh
Confidence            45799999999999999999964100        0            01111111111111   1123489999999998


Q ss_pred             chhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccC
Q psy11649         95 SRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRT  173 (890)
Q Consensus        95 ~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~  173 (890)
                      .|..-.... +.       +|++|+|+|..+.-.. .....|.+ .                                ..
T Consensus        83 dF~~e~~~~l~~-------~D~avlVvda~~Gv~~-~T~~~w~~-a--------------------------------~~  121 (276)
T d2bv3a2          83 DFTIEVERSMRV-------LDGAIVVFDSSQGVEP-QSETVWRQ-A--------------------------------EK  121 (276)
T ss_dssp             SCSTTHHHHHHH-------CCEEEEEEETTTSSCH-HHHHHHHH-H--------------------------------HT
T ss_pred             hhHHHHHHHHHh-------hhheEEeccccCCcch-hHHHHHHH-H--------------------------------HH
Confidence            874443333 33       8999999999996664 34444433 1                                12


Q ss_pred             CCCcEEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEe
Q psy11649        174 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHS  218 (890)
Q Consensus       174 l~IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etS  218 (890)
                      .++|.++++||+|..       .......+.++..++|...+.+.
T Consensus       122 ~~lP~i~fINKmDr~-------~ad~~~~l~ei~~~l~~~~vp~~  159 (276)
T d2bv3a2         122 YKVPRIAFANKMDKT-------GADLWLVIRTMQERLGARPVVMQ  159 (276)
T ss_dssp             TTCCEEEEEECTTST-------TCCHHHHHHHHHHTTCCCEEECE
T ss_pred             cCCCEEEEEeccccc-------ccccchhHHHHHHHhCCCeEEEE
Confidence            379999999999984       33345567777778887766654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.5e-08  Score=95.28  Aligned_cols=113  Identities=15%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+.+|+..+..+.+.  .+..    .-++|+|+|++.|.++ +.+.+|+..++.+..                   
T Consensus        53 ~~~i~d~~g~~~~~~~~~~--~~~~----~d~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~-------------------  106 (173)
T d2a5ja1          53 KLQIWDTAGQESFRSITRS--YYRG----AAGALLVYDITRRETF-NHLTSWLEDARQHSS-------------------  106 (173)
T ss_dssp             EEEEECCTTGGGTSCCCHH--HHTT----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC-------------------
T ss_pred             EEEeecccCccchhhHHHH--Hhhc----cCEEEEEEeecChHHH-HhHHHHHHHHHHhCC-------------------
Confidence            3489999999887776665  2222    2378999999999999 888888876644211                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -++|+||||||+|+...-..     -...++.+|..+|+..+.||+|
T Consensus       107 ---------------------------------~~~piilv~nK~D~~~~~~~-----~~~~~~~~a~~~~~~~~e~Sa~  148 (173)
T d2a5ja1         107 ---------------------------------SNMVIMLIGNKSDLESRRDV-----KREEGEAFAREHGLIFMETSAK  148 (173)
T ss_dssp             ---------------------------------TTCEEEEEEECTTCGGGCCS-----CHHHHHHHHHHHTCEEEEECTT
T ss_pred             ---------------------------------CCCeEEEEecCCchhhhhhh-----HHHHHHHHHHHcCCEEEEecCC
Confidence                                             14799999999997532111     1245778889999999999999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++.-|...++
T Consensus       149 tg~~V~e~f~~i~~~i~  165 (173)
T d2a5ja1         149 TACNVEEAFINTAKEIY  165 (173)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999988887765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.9e-08  Score=96.86  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=83.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+++|+.+|...+..+.+.  .+.    ...++++|+|++.|.++ +.+.+|...+.++...                  
T Consensus        54 ~~~~~d~~g~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~------------------  108 (171)
T d2erya1          54 RLDILDTAGQEEFGAMREQ--YMR----TGEGFLLVFSVTDRGSF-EEIYKFQRQILRVKDR------------------  108 (171)
T ss_dssp             EEEEEECC----CCHHHHH--HHH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTS------------------
T ss_pred             ccccccccccccccccccc--ccc----ccceEEEeeccccccch-hhHHHHhHHHHhhccc------------------
Confidence            3589999999776665554  222    23489999999999998 8899999876653321                  


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                       -.+|+||||||+|+-.+     .......++.||.++|++.+.||+|
T Consensus       109 ---------------------------------~~~p~ilvgnK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sak  150 (171)
T d2erya1         109 ---------------------------------DEFPMILIGNKADLDHQ-----RQVTQEEGQQLARQLKVTYMEASAK  150 (171)
T ss_dssp             ---------------------------------SCCSEEEEEECTTCTTS-----CSSCHHHHHHHHHHTTCEEEECBTT
T ss_pred             ---------------------------------CCCCEEEEEeccchhhh-----ccchHHHHHHHHHHcCCEEEEEcCC
Confidence                                             02789999999998532     1122345688899999999999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      ++.|++.++..|.+.+
T Consensus       151 ~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         151 IRMNVDQAFHELVRVI  166 (171)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999999998765

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.63  E-value=5.4e-08  Score=97.79  Aligned_cols=25  Identities=8%  Similarity=0.014  Sum_probs=22.1

Q ss_pred             CCeEEEEeccCCCCHHHHHHHHHHH
Q psy11649        211 GASLLFHSSLDPGLVKRTRDILNHY  235 (890)
Q Consensus       211 Ga~l~etSAK~~~nId~Lk~~I~~~  235 (890)
                      .++++++||++|+|+++|.++|...
T Consensus       216 ~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         216 PVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4679999999999999999988764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.1e-08  Score=94.05  Aligned_cols=115  Identities=12%  Similarity=0.175  Sum_probs=85.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|......+.+.  .    ......+++++|++.+.++ +.++.|+..++.+...                   
T Consensus        57 ~~i~d~~g~~~~~~~~~~--~----~~~~~~~i~~~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  110 (174)
T d1wmsa_          57 MQIWDTAGQERFRSLRTP--F----YRGSDCCLLTFSVDDSQSF-QNLSNWKKEFIYYADV-------------------  110 (174)
T ss_dssp             EEEEECCCCGGGHHHHGG--G----GTTCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTC-------------------
T ss_pred             EeeecccCcceehhhhhh--h----hhccceEEEEEeeeccccc-chhhhHHHHHHHHhcc-------------------
Confidence            379999998666654444  1    2223489999999999998 8899999988876542                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K  551 (890)
                            .                       .+-++|+||||||+|+...      ......++.||..+|+ ..+.||+|
T Consensus       111 ------~-----------------------~~~~~piilVgnK~Dl~~~------~v~~~~~~~~~~~~~~~~~~e~Sak  155 (174)
T d1wmsa_         111 ------K-----------------------EPESFPFVILGNKIDISER------QVSTEEAQAWCRDNGDYPYFETSAK  155 (174)
T ss_dssp             ------S-----------------------CTTTSCEEEEEECTTCSSC------SSCHHHHHHHHHHTTCCCEEECCTT
T ss_pred             ------c-----------------------cCCCceEEEeccccchhhc------cCcHHHHHHHHHHcCCCeEEEEcCC
Confidence                  0                       0125899999999998531      1223346788888875 55669999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++..|...+.
T Consensus       156 ~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         156 DATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999887764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.61  E-value=7.7e-08  Score=102.18  Aligned_cols=86  Identities=13%  Similarity=0.123  Sum_probs=44.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC---CCCC-----CCCccceeEEEEEE--------------ecc-ccceEEEEEEcCC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK---NDTP-----KPTLALEYIYARKS--------------GKT-VMKDICHLWELGS   92 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~---~~~~-----kptigvdY~f~~~~--------------g~~-~~k~~l~IwDlpG   92 (890)
                      ++|.+||.||||||||+|+|++.   ..+|     .|.+|+-+......              ... .....++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            47999999999999999999984   2233     11223221000000              000 0113699999999


Q ss_pred             Ccchh----hHHhhhhccccccccCcEEEEEEeCCC
Q psy11649         93 GTSRL----EVASLFSSFSLTAQSGFTLVLMLDLSR  124 (890)
Q Consensus        93 ~~~~~----~Li~~~r~~~~~~~~ad~IIIV~DlSn  124 (890)
                      .....    .+...+ -..++  .+|+++.|+|+++
T Consensus        81 li~ga~~g~~~~~~~-l~~i~--~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKF-LDDLR--MASALIHVVDATG  113 (319)
T ss_dssp             --------------C-CCSST--TCSEEEEEEETTC
T ss_pred             cccchhcccchHHHH-HHhhc--cceEEEEEecccc
Confidence            75432    222222 01122  5999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.3e-07  Score=91.47  Aligned_cols=115  Identities=18%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHH-HHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAET-FLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~-W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      .++|+.+|...+..+.+.  -+..    ..++|+|+|++.|.++ +.+.. |...++.. .                   
T Consensus        52 l~i~D~~g~~~~~~~~~~--~~~~----~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~-~-------------------  104 (177)
T d1kmqa_          52 LALWDTAGLEDYDRLRPL--SYPD----TDVILMCFSIDSPDSL-ENIPEKWTPEVKHF-C-------------------  104 (177)
T ss_dssp             EEEEEECCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHH-S-------------------
T ss_pred             eeccccCccchhcccchh--hccc----chhhhhhcccchhHHH-HHHHHHHHHHHHHh-C-------------------
Confidence            589999999877776655  2222    2378999999999998 44444 44433321 1                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHH------H-HHHHHHHHHHHHcCCc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKK------R-IAVQCLRYLAHVNGAS  544 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~------d-~Iq~~lR~fcl~yGAs  544 (890)
                                         +              .+|++|||||+|+...-.....      + .-....+.+|..+|+-
T Consensus       105 -------------------~--------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~  151 (177)
T d1kmqa_         105 -------------------P--------------NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF  151 (177)
T ss_dssp             -------------------T--------------TSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             -------------------C--------------CCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCc
Confidence                               0              3799999999999742111110      0 1134577899999985


Q ss_pred             -eeEeccCChhhHHHHHHHHhhhh
Q psy11649        545 -LLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       545 -L~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                       .|-||+|.+.|++.++..+...+
T Consensus       152 ~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         152 GYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHH
Confidence             45599999999999998887654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3.1e-08  Score=95.85  Aligned_cols=111  Identities=20%  Similarity=0.169  Sum_probs=79.7

Q ss_pred             EEEEeCCCcccccccccccccccccc-cceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        394 HLWELGSGTSRLEVASLFSSFSLTAQ-SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       394 ~vW~L~G~~~~~~Ll~~~~al~~~~~-~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+|++.|...+..++.-      ..+ ..-++|||+|++.+.++ +.+++|+..+.....                    
T Consensus        56 ~~~d~~~~~g~e~~~~~------~~~~~~~~~ilvfd~t~~~s~-~~~~~~~~~i~~~~~--------------------  108 (172)
T d2g3ya1          56 ILLDMWENKGENEWLHD------HCMQVGDAYLIVYSITDRASF-EKASELRIQLRRARQ--------------------  108 (172)
T ss_dssp             EEECCTTTTHHHHHHHH------CCCCCCSEEEEEEETTCHHHH-HHHHHHHHHHHTSGG--------------------
T ss_pred             eeecccccccccccccc------ccccccceeeeeecccccchh-hhhhhhhhhhhhccc--------------------
Confidence            68888766554444322      122 12378999999999998 788889876543111                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     +-.+|+||||+|+|+...-+     .-....+.+|..+|+..|.||+|.
T Consensus       109 -------------------------------~~~~piilvgnK~Dl~~~~~-----v~~~~~~~~a~~~~~~~~e~Sak~  152 (172)
T d2g3ya1         109 -------------------------------TEDIPIILVGNKSDLVRCRE-----VSVSEGRACAVVFDCKFIETSAAV  152 (172)
T ss_dssp             -------------------------------GTTSCEEEEEECTTCGGGCC-----SCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             -------------------------------cCCceEEEEecccccccccc-----ccHHHHHHHHHHcCCeEEEEeCCC
Confidence                                           01379999999999864211     112345778999999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|.+.+
T Consensus       153 g~~i~~~f~~l~~~i  167 (172)
T d2g3ya1         153 QHNVKELFEGIVRQV  167 (172)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999998875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.59  E-value=3.3e-07  Score=94.84  Aligned_cols=122  Identities=12%  Similarity=0.035  Sum_probs=69.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC---CCCCCccceeEEEEEEeccccceEEEEEEcCCCcch----hhHHhhh-hcc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND---TPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSR----LEVASLF-SSF  106 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~---~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~----~~Li~~~-r~~  106 (890)
                      .++|+|+|.+|||||||+|.++++..   ...+..+-+.......   ..+..+.++||||....    ....... ...
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~---~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS---RAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEE---ETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEE---eccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            68999999999999999999999531   2222222221111111   12347999999996422    2222211 100


Q ss_pred             ccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeeccc
Q psy11649        107 SLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYD  186 (890)
Q Consensus       107 ~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~D  186 (890)
                      .  ..+.+++++|++++... +-......++.+.+.+.+                           ....+++||.||+|
T Consensus       109 ~--~~~~~~il~v~~~~~~r-~~~~~~~~l~~l~~~fg~---------------------------~~~~~~ivv~t~~D  158 (257)
T d1h65a_         109 L--DKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGK---------------------------GIWNKAIVALTHAQ  158 (257)
T ss_dssp             T--TCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCG---------------------------GGGGGEEEEEECCS
T ss_pred             h--cCCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHcch---------------------------hhhhCEEEEEECcc
Confidence            1  11478899998887542 112333344444443322                           11247899999999


Q ss_pred             CCC
Q psy11649        187 LFE  189 (890)
Q Consensus       187 l~~  189 (890)
                      ...
T Consensus       159 ~~~  161 (257)
T d1h65a_         159 FSP  161 (257)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            863

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.3e-07  Score=90.55  Aligned_cols=113  Identities=16%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+.+.  .+..    ..++|+|+|++.|.++ +.++.|+..+.+....                   
T Consensus        53 ~~~~d~~g~~~~~~~~~~--~~~~----~~~~ilv~d~~~~~sf-~~~~~~~~~~~~~~~~-------------------  106 (167)
T d1c1ya_          53 LEILDTAGTEQFTAMRDL--YMKN----GQGFALVYSITAQSTF-NDLQDLREQILRVKDT-------------------  106 (167)
T ss_dssp             EEEEEECSSCSSTTHHHH--HHHH----CSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------
T ss_pred             eccccccCcccccccccc--cccc----cceeEEeeeccchhhh-HhHHHHHHHHHHhcCC-------------------
Confidence            589999999887766554  1221    2389999999999998 9999999887653221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K  551 (890)
                                                      -.+|+||||||+|+-..-....     +..+.+|.++ |...|-||+|
T Consensus       107 --------------------------------~~~p~ilvgnK~Dl~~~~~~~~-----~~~~~~~~~~~~~~~~e~Sak  149 (167)
T d1c1ya_         107 --------------------------------EDVPMILVGNKCDLEDERVVGK-----EQGQNLARQWCNCAFLESSAK  149 (167)
T ss_dssp             --------------------------------SCCCEEEEEECTTCGGGCCSCH-----HHHHHHHHHTTSCEEEECBTT
T ss_pred             --------------------------------CCCeEEEEEEecCcccccccch-----hHHHHHHHHhCCCEEEEEcCC
Confidence                                            0379999999999975432222     2335566665 5667779999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      ++.|++.++..|..++.
T Consensus       150 ~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         150 SKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTBSHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHhc
Confidence            99999999999988763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=8.9e-08  Score=93.14  Aligned_cols=116  Identities=14%  Similarity=0.208  Sum_probs=85.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+.+.  .+.    ..-.+++++|++.+.++ +.+++|+..++.+...                   
T Consensus        53 ~~~~d~~g~~~~~~~~~~--~~~----~~~~~i~~~d~~~~~~~-~~~~~~~~~i~~~~~~-------------------  106 (184)
T d1vg8a_          53 MQIWDTAGQERFQSLGVA--FYR----GADCCVLVFDVTAPNTF-KTLDSWRDEFLIQASP-------------------  106 (184)
T ss_dssp             EEEEEECSSGGGSCSCCG--GGT----TCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------
T ss_pred             EEeeecCCcccccccccc--ccc----CccEEEEeecccchhhh-hcchhhHHHHHHHhcc-------------------
Confidence            489999998776666555  222    22389999999999998 8899999888876653                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHH-HHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLA-HVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fc-l~yGAsL~ftS~K  551 (890)
                               .                    .+-.+|+||||+|+|+-..-      ........+| ..+|++.+.||+|
T Consensus       107 ---------~--------------------~~~~ip~ilv~nK~Dl~~~~------~~~~~~~~~~~~~~~~~~~e~Sak  151 (184)
T d1vg8a_         107 ---------R--------------------DPENFPFVVLGNKIDLENRQ------VATKRAQAWCYSKNNIPYFETSAK  151 (184)
T ss_dssp             ---------S--------------------SGGGSCEEEEEECTTSSCCC------SCHHHHHHHHHHTTSCCEEECBTT
T ss_pred             ---------c--------------------cccCCCEEEEEEeecccccc------hhHHHHHHHHHHhcCCeEEEEcCC
Confidence                     0                    01148999999999975311      1222223344 4568899999999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      ++.|++.++.+|...++.
T Consensus       152 ~~~gI~e~f~~l~~~i~~  169 (184)
T d1vg8a_         152 EAINVEQAFQTIARNALK  169 (184)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            999999999999888764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.4e-07  Score=90.94  Aligned_cols=112  Identities=13%  Similarity=0.175  Sum_probs=73.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+.+.  .+.    ...++|+|+|++.|.++ +.++.|...++.+..                    
T Consensus        57 l~i~D~~G~e~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  109 (173)
T d2fu5c1          57 LQIWDTAGQERFRTITTA--YYR----GAMGIMLVYDITNEKSF-DNIRNWIRNIEEHAS--------------------  109 (173)
T ss_dssp             EEEEEC---------CCT--TTT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--hcc----CCCEEEEEEECCChhhH-HHHHHHHHHhhhhcc--------------------
Confidence            489999998777766555  222    23489999999999998 778888877654221                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      ..+|++||++|+|....-....     +.++.+|..+|+..|.||++.
T Consensus       110 --------------------------------~~~~iilv~~k~D~~~~~~~~~-----~~~~~~~~~~~~~~~e~Sa~~  152 (173)
T d2fu5c1         110 --------------------------------ADVEKMILGNKCDVNDKRQVSK-----ERGEKLALDYGIKFMETSAKA  152 (173)
T ss_dssp             --------------------------------TTCEEEEEEEC--CCSCCCSCH-----HHHHHHHHHHTCEEEECCC--
T ss_pred             --------------------------------CCceEEEEEecccchhhcccHH-----HHHHHHHHhcCCEEEEEeCCC
Confidence                                            1378999999999885333222     235677899999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.||+.++.+|...+.
T Consensus       153 g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         153 NINVENAFFTLARDIK  168 (173)
T ss_dssp             -CCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999987663

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.4e-08  Score=99.02  Aligned_cols=113  Identities=19%  Similarity=0.292  Sum_probs=84.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|+..+..+.+.  .+.    ....+|+|+|++.+.++ +.+.+|+..+..+.                     
T Consensus        66 ~~i~dt~G~e~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~---------------------  117 (186)
T d2f7sa1          66 LQLWDTAGQERFRSLTTA--FFR----DAMGFLLMFDLTSQQSF-LNVRNWMSQLQANA---------------------  117 (186)
T ss_dssp             EEEEEEESHHHHHHHHHH--HHT----TCCEEEEEEETTCHHHH-HHHHHHHHTCCCCC---------------------
T ss_pred             eccccCCcchhhHHHHHH--HHh----cCCEEEEEEeccccccc-eeeeeccchhhhhc---------------------
Confidence            479999999776665555  222    22389999999999988 77888865332110                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                    ....+|++|||||+|+-..     +....+.++.||..+|+..|.||+|+
T Consensus       118 ------------------------------~~~~~~iilv~nK~Dl~~~-----~~v~~~e~~~~~~~~~~~~~e~Sak~  162 (186)
T d2f7sa1         118 ------------------------------YCENPDIVLIGNKADLPDQ-----REVNERQARELADKYGIPYFETSAAT  162 (186)
T ss_dssp             ------------------------------TTTCCEEEEEEECTTCGGG-----CCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             ------------------------------cCCCceEEEEeeeccchhh-----hcchHHHHHHHHHHcCCEEEEEeCCC
Confidence                                          0114789999999998532     12333456788999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.+++.|.+.++
T Consensus       163 ~~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         163 GQNVEKAVETLLDLIM  178 (186)
T ss_dssp             TBTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.6e-08  Score=93.74  Aligned_cols=112  Identities=11%  Similarity=0.125  Sum_probs=86.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+.+|+..+..+.+.  -+.    ...++++|+|++.+.++ +.+++|+..+..+..                    
T Consensus        54 l~i~D~~g~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~~--------------------  106 (170)
T d1i2ma_          54 FNVWDTAGQEKFGGLRDG--YYI----QAQCAIIMFDVTSRVTY-KNVPNWHRDLVRVCE--------------------  106 (170)
T ss_dssp             EEEEECTTHHHHSSCGGG--GTT----TCCEEEEEEETTSGGGG-TTHHHHHHHHHHHHC--------------------
T ss_pred             ccccccccccccceecch--hcc----cccchhhcccccccccc-chhHHHHHHHhhccC--------------------
Confidence            589999999777766655  122    23389999999999998 889999976554321                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                       .+|+||||||+|+-..-..++       ...+|..+|...|-||+|.
T Consensus       107 ---------------------------------~~piilvgnK~Dl~~~~~~~~-------~~~~~~~~~~~~~e~Sak~  146 (170)
T d1i2ma_         107 ---------------------------------NIPIVLCGNKVDIKDRKVKAK-------SIVFHRKKNLQYYDISAKS  146 (170)
T ss_dssp             ---------------------------------SCCEEEEEECCCCSCSCCTTT-------SHHHHSSCSSEEEEEBTTT
T ss_pred             ---------------------------------CCceeeecchhhhhhhhhhhH-------HHHHHHHcCCEEEEEeCCC
Confidence                                             279999999999864332221       2346778899999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~  571 (890)
                      +.|++.++..|...+.+-|
T Consensus       147 ~~~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         147 NYNFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             TBTTTHHHHHHHHHHHTCT
T ss_pred             CCCHHHHHHHHHHHHccCC
Confidence            9999999999999997643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.2e-07  Score=91.15  Aligned_cols=117  Identities=17%  Similarity=0.254  Sum_probs=78.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|+.....+...  .+    -....+++|+|++.+.++ +.+++|++.++.+...                   
T Consensus        54 ~~~~d~~g~~~~~~~~~~--~~----~~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-------------------  107 (175)
T d1ky3a_          54 MQVWDTAGQERFQSLGVA--FY----RGADCCVLVYDVTNASSF-ENIKSWRDEFLVHANV-------------------  107 (175)
T ss_dssp             EEEECCC----------C--CS----TTCCEEEEEEETTCHHHH-HTHHHHHHHHHHHHCC-------------------
T ss_pred             ceeeccCCchhhhhHHHH--Hh----hccceEEEEeeccccccc-chhhhcchhhhhhhhh-------------------
Confidence            478999998665555444  11    123478999999999998 8899999998886553                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-ceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-SLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-sL~ftS~K  551 (890)
                            .                       .+-.+|+||||+|+|+...    +.-.....++.||..+|+ ..+-||+|
T Consensus       108 ------~-----------------------~~~~~piilv~nK~Dl~~~----~~~v~~~~~~~~~~~~~~~~~~e~SA~  154 (175)
T d1ky3a_         108 ------N-----------------------SPETFPFVILGNKIDAEES----KKIVSEKSAQELAKSLGDIPLFLTSAK  154 (175)
T ss_dssp             ------S-----------------------CTTTCCEEEEEECTTSCGG----GCCSCHHHHHHHHHHTTSCCEEEEBTT
T ss_pred             ------c-----------------------ccccCcEEEEecccchhhh----hcchhHHHHHHHHHHcCCCeEEEEeCC
Confidence                  0                       0114899999999998631    111112455778899985 56669999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      .+.|++.++..|...++
T Consensus       155 ~g~gv~e~f~~l~~~~l  171 (175)
T d1ky3a_         155 NAINVDTAFEEIARSAL  171 (175)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999998877654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.1e-07  Score=91.31  Aligned_cols=112  Identities=13%  Similarity=0.168  Sum_probs=85.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+.+|...+..+.+.  -+.    ....+++|+|++.+.++ +.++.|...+.....                    
T Consensus        57 ~~~~d~~g~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  109 (170)
T d1r2qa_          57 FEIWDTAGQERYHSLAPM--YYR----GAQAAIVVYDITNEESF-ARAKNWVKELQRQAS--------------------  109 (170)
T ss_dssp             EEEEEECCSGGGGGGHHH--HHT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred             EEeccCCCchhhhhhHHH--Hhh----CcceEEEEeccchhhHH-HHHHHHhhhhhhccC--------------------
Confidence            589999999777766554  122    22378899999999998 788888776543111                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|+||||||+|+...-.     .=...++.+|..+|+..+.||+|.
T Consensus       110 --------------------------------~~~~iilvgnK~Dl~~~~~-----v~~e~~~~~~~~~~~~~~e~SAk~  152 (170)
T d1r2qa_         110 --------------------------------PNIVIALSGNKADLANKRA-----VDFQEAQSYADDNSLLFMETSAKT  152 (170)
T ss_dssp             --------------------------------TTCEEEEEEECGGGGGGCC-----SCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             --------------------------------CCceEEeeccccccccccc-----ccHHHHHHHHHhcCCEEEEeeCCC
Confidence                                            0389999999999864311     113456788899999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|..++.
T Consensus       153 g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         153 SMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             CTTHHHHHHHHHHTSC
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=8.1e-08  Score=92.30  Aligned_cols=112  Identities=17%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+.+|......+..+   +.    ....+++|+|++.|.++ ++++.|+.....+...                   
T Consensus        52 l~i~D~~g~~~~~~~~~~---~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~-------------------  104 (168)
T d2atva1          52 MEILDTAGQEDTIQREGH---MR----WGEGFVLVYDITDRGSF-EEVLPLKNILDEIKKP-------------------  104 (168)
T ss_dssp             EEEEECCCCCCCHHHHHH---HH----HCSEEEEEEETTCHHHH-HTHHHHHHHHHHHHTT-------------------
T ss_pred             EEEeecccccccccchhh---hc----ccccceeecccCCccch-hhhhhhcccccccccc-------------------
Confidence            489999998544322222   11    23479999999999998 9999998765543221                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -++|++|||||+|+-..-     ..=.+.++.||..+|+..|-||+|.
T Consensus       105 --------------------------------~~~piilvgnK~Dl~~~r-----~V~~~e~~~~a~~~~~~~~e~Sakt  147 (168)
T d2atva1         105 --------------------------------KNVTLILVGNKADLDHSR-----QVSTEEGEKLATELACAFYECSACT  147 (168)
T ss_dssp             --------------------------------SCCCEEEEEECGGGGGGC-----CSCHHHHHHHHHHHTSEEEECCTTT
T ss_pred             --------------------------------cCcceeeeccchhhhhhc-----cCcHHHHHHHHHHhCCeEEEEcccc
Confidence                                            037999999999985321     1113456778899999999999999


Q ss_pred             hh-hHHHHHHHHhhhhc
Q psy11649        553 PG-LVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~-n~~~l~kyi~hr~f  568 (890)
                      +. |++.++..|.+.+.
T Consensus       148 g~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         148 GEGNITEIFYELCREVR  164 (168)
T ss_dssp             CTTCHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            86 89999988887663

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=1.9e-07  Score=90.95  Aligned_cols=115  Identities=17%  Similarity=0.225  Sum_probs=79.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHH-HHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETF-LAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W-~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +++|+.+|+..+..+.+.  -+.    ...++++|+|++.+.++ +.+..| ...++.+.                    
T Consensus        52 ~~i~D~~g~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~~--------------------  104 (179)
T d1m7ba_          52 LSLWDTSGSPYYDNVRPL--SYP----DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC--------------------  104 (179)
T ss_dssp             EEEEEECCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHC--------------------
T ss_pred             eccccccccccccccccc--hhh----hhhhhheeeecccCCCH-HHHHHHHHHHHhccC--------------------
Confidence            489999999877766655  222    23489999999999998 555544 43333210                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhH------H-HHHHHHHHHHHHHcCCc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNK------K-RIAVQCLRYLAHVNGAS  544 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~------~-d~Iq~~lR~fcl~yGAs  544 (890)
                                                       -++|++|||||+|+..+.....      + ..-....+.+|.++|+.
T Consensus       105 ---------------------------------~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~  151 (179)
T d1m7ba_         105 ---------------------------------PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAA  151 (179)
T ss_dssp             ---------------------------------TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             ---------------------------------CcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCC
Confidence                                             0379999999999864322111      0 12245667899999998


Q ss_pred             eeE-eccCChhh-HHHHHHHHhhhh
Q psy11649        545 LLF-HSSLDPGL-VKRTRDILNHYA  567 (890)
Q Consensus       545 L~f-tS~K~~~n-~~~l~kyi~hr~  567 (890)
                      .+| ||+|.+.| ++.+++.+...+
T Consensus       152 ~y~E~SAk~~~n~i~~~F~~~~~~~  176 (179)
T d1m7ba_         152 TYIECSALQSENSVRDIFHVATLAC  176 (179)
T ss_dssp             EEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCcCHHHHHHHHHHHH
Confidence            777 99999998 999888776544

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.4e-07  Score=92.92  Aligned_cols=114  Identities=17%  Similarity=0.243  Sum_probs=85.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .+||+.+|+..+..+.+.  .+.    ...++|+|+|+|.+.++ ..+..|...++.+..                    
T Consensus        57 l~i~Dt~G~e~~~~~~~~--~~~----~a~~~i~v~d~t~~~s~-~~~~~~~~~~~~~~~--------------------  109 (194)
T d2bcgy1          57 LQIWDTAGQERFRTITSS--YYR----GSHGIIIVYDVTDQESF-NGVKMWLQEIDRYAT--------------------  109 (194)
T ss_dssp             EEEECCTTTTTTTCCCGG--GGT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--Hhc----cCCEEEEEEeCcchhhh-hhHhhhhhhhhhccc--------------------
Confidence            489999999776665544  222    22389999999999998 667767666543211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -.+|+||||+|+|+-..-.     ......+.+|..+++..+++|+|.
T Consensus       110 --------------------------------~~~~iilv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~e~SAk~  152 (194)
T d2bcgy1         110 --------------------------------STVLKLLVGNKCDLKDKRV-----VEYDVAKEFADANKMPFLETSALD  152 (194)
T ss_dssp             --------------------------------TTCEEEEEEECTTCTTTCC-----SCHHHHHHHHHHTTCCEEECCTTT
T ss_pred             --------------------------------CCceEEEEEeccccccccc-----hhHHHHhhhhhccCcceEEEecCc
Confidence                                            1379999999999864222     223456778899999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCC
Q psy11649        553 PGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~  570 (890)
                      +.|++.++..|...++..
T Consensus       153 g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         153 STNVEDAFLTMARQIKES  170 (194)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHH
Confidence            999999999999988753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.5e-07  Score=89.91  Aligned_cols=117  Identities=21%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHH-HHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAET-FLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~-W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      +++|+.+|+..+..+.+.  .+..    ..++++|+|++.+.++ +++.. |+..++.+..                   
T Consensus        55 ~~~~d~~g~~~~~~~~~~--~~~~----~~~~ilv~d~~~~~sf-~~i~~~~~~~~~~~~~-------------------  108 (183)
T d1mh1a_          55 LGLWDTAGQEDYDRLRPL--SYPQ----TDVSLICFSLVSPASF-ENVRAKWYPEVRHHCP-------------------  108 (183)
T ss_dssp             EEEECCCCSGGGTTTGGG--GCTT----CSEEEEEEETTCHHHH-HHHHHTHHHHHHHHST-------------------
T ss_pred             EEeecccccccchhhhhh--cccc----cceeeeeeccchHHHH-HHHHHHHHHHHHHhCC-------------------
Confidence            489999999877776665  2332    2378999999999998 66665 5544443110                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-hHH------HHHHHHHHHHHHHcCCc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-NKK------RIAVQCLRYLAHVNGAS  544 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E~~------d~Iq~~lR~fcl~yGAs  544 (890)
                                                        .+|+||||||+|+..+-.. ++.      .......+.+|..+|+.
T Consensus       109 ----------------------------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  154 (183)
T d1mh1a_         109 ----------------------------------NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV  154 (183)
T ss_dssp             ----------------------------------TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             ----------------------------------CCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCc
Confidence                                              2789999999998632110 000      12245678899999965


Q ss_pred             e-eEeccCChhhHHHHHHHHhhhhcC
Q psy11649        545 L-LFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       545 L-~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      - |=||+|.+.|++.++..|...+.-
T Consensus       155 ~~~E~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         155 KYLECSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             eEEEcCCCCCcCHHHHHHHHHHHHcC
Confidence            4 448999999999999988877643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.1e-07  Score=87.16  Aligned_cols=111  Identities=16%  Similarity=0.201  Sum_probs=78.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +++|+.+|+..+..+...  -..    ...++++|+|++.+.++ ..++.|...+.....                    
T Consensus        58 l~i~Dt~G~e~~~~~~~~--~~~----~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  110 (170)
T d2g6ba1          58 LQMWDTAGQERFRSVTHA--YYR----DAHALLLLYDVTNKASF-DNIQAWLTEIHEYAQ--------------------  110 (170)
T ss_dssp             EEEEECCCC--------C--CGG----GCSEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--hhc----CCceeEEEecCCcccch-hhhhhhhhhhhhccC--------------------
Confidence            489999999777766555  112    23479999999999998 666666654333111                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      ..+|+|+|++|+|......-.     ++.++.+|..+|+..+.||+|.
T Consensus       111 --------------------------------~~~~iilv~~k~d~~~~~~v~-----~~~~~~~~~~~~~~~~e~Sak~  153 (170)
T d2g6ba1         111 --------------------------------HDVALMLLGNKVDSAHERVVK-----REDGEKLAKEYGLPFMETSAKT  153 (170)
T ss_dssp             --------------------------------TTCEEEEEEECCSTTSCCCSC-----HHHHHHHHHHHTCCEEECCTTT
T ss_pred             --------------------------------CCceEEEEEeeechhhccccc-----HHHHHHHHHHcCCEEEEEeCCC
Confidence                                            136899999999998643322     3467888999999999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++..|...+
T Consensus       154 g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         154 GLNVDLAFTAIAKEL  168 (170)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHc
Confidence            999999999988664

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=2.6e-07  Score=88.51  Aligned_cols=113  Identities=13%  Similarity=0.207  Sum_probs=82.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+..|......+.+.  .+.    ...++++|+|++.|.++ +.++.|.........                    
T Consensus        54 l~i~d~~g~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  106 (170)
T d1ek0a_          54 FEIWDTAGQERFASLAPM--YYR----NAQAALVVYDVTKPQSF-IKARHWVKELHEQAS--------------------  106 (170)
T ss_dssp             EEEEEECCSGGGGGGHHH--HHT----TCSEEEEEEETTCHHHH-HHHHHHHHHHHHHSC--------------------
T ss_pred             ccccccCCchhHHHHHHH--HHh----ccceEEEEEeCCcccch-hhhhhhhhhhccccc--------------------
Confidence            489999999777766655  223    22379999999999999 889998864433111                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      -..|+++||+|+|+...-..  ...-...++.+|..+|+..+.||+|.
T Consensus       107 --------------------------------~~~~~~~v~nk~d~~~~~~~--~~v~~~~~~~~~~~~~~~~~e~Sak~  152 (170)
T d1ek0a_         107 --------------------------------KDIIIALVGNKIDMLQEGGE--RKVAREEGEKLAEEKGLLFFETSAKT  152 (170)
T ss_dssp             --------------------------------TTCEEEEEEECGGGGGSSCC--CCSCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             --------------------------------cccceeeeecccccccccch--hhhhHHHHHHHHHHcCCEEEEecCCC
Confidence                                            13678999999999753221  11122345678888999999999999


Q ss_pred             hhhHHHHHHHHhhh
Q psy11649        553 PGLVKRTRDILNHY  566 (890)
Q Consensus       553 ~~n~~~l~kyi~hr  566 (890)
                      +.|++.++..|.-+
T Consensus       153 g~gV~e~F~~i~~~  166 (170)
T d1ek0a_         153 GENVNDVFLGIGEK  166 (170)
T ss_dssp             CTTHHHHHHHHHTT
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999999988654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.8e-07  Score=89.03  Aligned_cols=109  Identities=17%  Similarity=0.295  Sum_probs=77.4

Q ss_pred             eeEEEEeCCCccccccc-ccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVA-SLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll-~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      ...+|+..|+.....+. +.  .+.    ..-++++|+|++.|.++ +.+++|+..+.++...                 
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~--~~~----~~d~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~-----------------  107 (165)
T d1z06a1          52 KIQLWDTAGQERFRKSMVQH--YYR----NVHAVVFVYDMTNMASF-HSLPAWIEECKQHLLA-----------------  107 (165)
T ss_dssp             EEEEEECCCSHHHHTTTHHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHHHHCCC-----------------
T ss_pred             EEEEEeccCchhhcccccee--eec----CCCceEEEEEeehhhhh-hhhhhhhHHHHhhccC-----------------
Confidence            45789999875544321 21  111    22389999999999999 8899999877653221                 


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEecc
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSS  550 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~  550 (890)
                                                        -++|++|||||+|+...-+     .-...++.||.++|+..+.||+
T Consensus       108 ----------------------------------~~~pi~lvgnK~Dl~~~~~-----v~~~~~~~~~~~~~~~~~e~SA  148 (165)
T d1z06a1         108 ----------------------------------NDIPRILVGNKCDLRSAIQ-----VPTDLAQKFADTHSMPLFETSA  148 (165)
T ss_dssp             ----------------------------------SCCCEEEEEECTTCGGGCC-----SCHHHHHHHHHHTTCCEEECCS
T ss_pred             ----------------------------------CCCeEEEEeccccchhccc-----hhHHHHHHHHHHCCCEEEEEec
Confidence                                              1489999999999874321     2233457899999999999999


Q ss_pred             CChh---hHHHHHHHH
Q psy11649        551 LDPG---LVKRTRDIL  563 (890)
Q Consensus       551 K~~~---n~~~l~kyi  563 (890)
                      |...   |++.++..|
T Consensus       149 kt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             SSGGGGSCHHHHHHHH
T ss_pred             ccCCcCcCHHHHHHHh
Confidence            9754   787777654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6.8e-07  Score=87.47  Aligned_cols=119  Identities=16%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHH-HHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETF-LAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W-~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      ..++|+.+|+..+..+.+.  .+.    ..-++++|+|++.+.++ +.+..| ...++.+..                  
T Consensus        52 ~l~i~D~~g~~~~~~~~~~--~~~----~~~~~ilv~d~~~~~Sf-~~~~~~~~~~~~~~~~------------------  106 (191)
T d2ngra_          52 TLGLFDTAGQEDYDRLRPL--SYP----QTDVFLVCFSVVSPSSF-ENVKEKWVPEITHHCP------------------  106 (191)
T ss_dssp             EEEEEEECCSGGGTTTGGG--GCT----TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT------------------
T ss_pred             eeeccccccchhhhhhhhh--ccc----ccceeecccccchHHHH-HHHHHHHHHHHhhcCC------------------
Confidence            3589999999877776666  333    23378999999999998 677554 433332110                  


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCCh-h------HHHHHHHHHHHHHHHcCC
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEP-N------KKRIAVQCLRYLAHVNGA  543 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~-E------~~d~Iq~~lR~fcl~yGA  543 (890)
                                                         ++|+++||||+|+..+-.. +      +...-....+.||..+++
T Consensus       107 -----------------------------------~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  151 (191)
T d2ngra_         107 -----------------------------------KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKA  151 (191)
T ss_dssp             -----------------------------------TCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred             -----------------------------------CCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCC
Confidence                                               3789999999999743110 0      001224566789999876


Q ss_pred             -ceeEeccCChhhHHHHHHHHhhhhcCC
Q psy11649        544 -SLLFHSSLDPGLVKRTRDILNHYAFSS  570 (890)
Q Consensus       544 -sL~ftS~K~~~n~~~l~kyi~hr~fg~  570 (890)
                       ..+-||+|++.|++.++..+...+...
T Consensus       152 ~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         152 VKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence             455599999999999999998887653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=5.9e-07  Score=85.57  Aligned_cols=111  Identities=14%  Similarity=0.201  Sum_probs=84.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..||+.+|+..+..+.+.  .+.    ...++|+|+|++.|.++ +.++.|+........                    
T Consensus        53 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~--------------------  105 (166)
T d1g16a_          53 LQIWDTAGQERFRTITTA--YYR----GAMGIILVYDITDERTF-TNIKQWFKTVNEHAN--------------------  105 (166)
T ss_dssp             EEEECCTTGGGTSCCCHH--HHT----TEEEEEEEEETTCHHHH-HTHHHHHHHHHHHSC--------------------
T ss_pred             EEEEECCCchhhHHHHHH--HHh----cCCEEEEEEECCCccCH-HHHHhhhhhhhcccc--------------------
Confidence            478999999777766555  222    23489999999999987 888888865554211                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                      ...|+++|++|.|....-..      ...++.+|.++|+..++||+|.
T Consensus       106 --------------------------------~~~~~i~~~~k~d~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~  147 (166)
T d1g16a_         106 --------------------------------DEAQLLLVGNKSDMETRVVT------ADQGEALAKELGIPFIESSAKN  147 (166)
T ss_dssp             --------------------------------TTCEEEEEEECTTCTTCCSC------HHHHHHHHHHHTCCEEECBTTT
T ss_pred             --------------------------------Ccceeeeecchhhhhhhhhh------HHHHHHHHHhcCCeEEEECCCC
Confidence                                            13678999999998643322      2357889999999999999999


Q ss_pred             hhhHHHHHHHHhhhhc
Q psy11649        553 PGLVKRTRDILNHYAF  568 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~f  568 (890)
                      +.|++.++..|...+.
T Consensus       148 ~~~v~e~f~~l~~~i~  163 (166)
T d1g16a_         148 DDNVNEIFFTLAKLIQ  163 (166)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999998887664

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=1.7e-06  Score=93.19  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=70.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC------------------CCCCCCccceeEEEEEE--e----------ccc-cce
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN------------------DTPKPTLALEYIYARKS--G----------KTV-MKD   83 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~------------------~~~kptigvdY~f~~~~--g----------~~~-~k~   83 (890)
                      -++|+|+|..++|||||+.+|+...                  .....++++.-......  .          ... ...
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            3469999999999999999996310                  01111222211111110  0          011 123


Q ss_pred             EEEEEEcCCCcchhhHHhhh-hccccccccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhcccccccccc
Q psy11649         84 ICHLWELGSGTSRLEVASLF-SSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  162 (890)
Q Consensus        84 ~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~  162 (890)
                      .++++||||+..|..-+... +.       +|++|+|+|....-.. ....-|.+.. +                     
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~-------~D~allVVda~eGv~~-qT~~~~~~a~-~---------------------  146 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRV-------TDGALVVVDTIEGVCV-QTETVLRQAL-G---------------------  146 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHT-------CSEEEEEEETTTBSCH-HHHHHHHHHH-H---------------------
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhh-------cCceEEEEecccCcch-hHHHHHHHHH-H---------------------
Confidence            79999999999886555444 43       8999999999996664 2333333211 1                     


Q ss_pred             ccccccccccCCCCcEEEEeecccCC
Q psy11649        163 DEHRDKGLIRTFPVPLILIGGKYDLF  188 (890)
Q Consensus       163 ~~~~d~~li~~l~IPiIVVgNK~Dl~  188 (890)
                                 .++|+++|.||+|..
T Consensus       147 -----------~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         147 -----------ERIKPVVVINKVDRA  161 (341)
T ss_dssp             -----------TTCEEEEEEECHHHH
T ss_pred             -----------cCCCeEEEEECcccc
Confidence                       268999999999974

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.24  E-value=5.8e-07  Score=85.59  Aligned_cols=115  Identities=15%  Similarity=0.138  Sum_probs=78.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ..++|+++|+..+...-..  .+.    ...++++|+|++.+.++ +....|+..+..+..                   
T Consensus        48 ~~~i~D~~G~~~~~~~~~~--~~~----~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~-------------------  101 (164)
T d1zd9a1          48 TIKLWDIGGQPRFRSMWER--YCR----GVSAIVYMVDAADQEKI-EASKNELHNLLDKPQ-------------------  101 (164)
T ss_dssp             EEEEEEECCSHHHHTTHHH--HHT----TCSEEEEEEETTCGGGH-HHHHHHHHHHHTCGG-------------------
T ss_pred             EEEEeeccccccccccccc--ccc----ccchhhccccccccccc-chhhhhhhhhhhhhc-------------------
Confidence            4599999998666554443  111    23389999999999998 555555433222100                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccC
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  551 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K  551 (890)
                                                      .-++|++||+||.|+....+.  .+.+++.-+.++..+++..+.||++
T Consensus       102 --------------------------------~~~~pi~lv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~e~Sa~  147 (164)
T d1zd9a1         102 --------------------------------LQGIPVLVLGNKRDLPGALDE--KELIEKMNLSAIQDREICCYSISCK  147 (164)
T ss_dssp             --------------------------------GTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred             --------------------------------ccCCcEEEEEeccccchhhhH--HHHHHHHHHHHHHhCCCEEEEEeCc
Confidence                                            014899999999998644332  3344444455666778889999999


Q ss_pred             ChhhHHHHHHHHhhh
Q psy11649        552 DPGLVKRTRDILNHY  566 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr  566 (890)
                      .+.|++.++++|...
T Consensus       148 ~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         148 EKDNIDITLQWLIQH  162 (164)
T ss_dssp             TCTTHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHc
Confidence            999999999988754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.22  E-value=3e-06  Score=88.25  Aligned_cols=82  Identities=11%  Similarity=0.098  Sum_probs=49.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC---CCC-----CCCccceeEEEEEEe--------ccccc----eEEEEEEcCCCc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN---DTP-----KPTLALEYIYARKSG--------KTVMK----DICHLWELGSGT   94 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~---~~~-----kptigvdY~f~~~~g--------~~~~k----~~l~IwDlpG~~   94 (890)
                      .+||-+||-||||||||+|++++..   .+|     .|.+|+-    ....        ....+    ..+++.|+||..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv----~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi   77 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV----PMPDPRLDALAEIVKPERILPTTMEFVDIAGLV   77 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEE----ECCCHHHHHHHHHHCCSEEECCEEEEEECCSCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEE----ecccHhHHHHHHhcCCCceeeeeEEEEEccccC
Confidence            3689999999999999999999842   232     2333321    1110        00001    258899999975


Q ss_pred             chh----hHHhhh-hccccccccCcEEEEEEeCCC
Q psy11649         95 SRL----EVASLF-SSFSLTAQSGFTLVLMLDLSR  124 (890)
Q Consensus        95 ~~~----~Li~~~-r~~~~~~~~ad~IIIV~DlSn  124 (890)
                      ...    .+...+ +.  ++  .+|++|.|+|.+.
T Consensus        78 ~ga~~g~Glg~~FL~~--ir--~~d~LihVVr~f~  108 (278)
T d1jala1          78 AGASKGEGLGNKFLAN--IR--ETDAIGHVVRCFE  108 (278)
T ss_dssp             TTHHHHGGGTCCHHHH--HH--TCSEEEEEEECSC
T ss_pred             CCcccCCCccHHHHHH--HH--hccceEEEeeccC
Confidence            432    232233 11  12  4999999998753

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.20  E-value=2.3e-06  Score=90.07  Aligned_cols=83  Identities=12%  Similarity=0.094  Sum_probs=52.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHcC----CCCCCCCccceeEEEEEEec-----------c---ccceEEEEEEcCCCcc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLEK----NDTPKPTLALEYIYARKSGK-----------T---VMKDICHLWELGSGTS   95 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~~----~~~~kptigvdY~f~~~~g~-----------~---~~k~~l~IwDlpG~~~   95 (890)
                      ..+||.+||.||||||||+|++|+.    ..+| |..+++-........           .   .....+++.|+||...
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~any-pftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY-PYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC-SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCC-CccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4689999999999999999999973    1233 443333211111100           0   0012689999998542


Q ss_pred             h----h----hHHhhhhccccccccCcEEEEEEeCCC
Q psy11649         96 R----L----EVASLFSSFSLTAQSGFTLVLMLDLSR  124 (890)
Q Consensus        96 ~----~----~Li~~~r~~~~~~~~ad~IIIV~DlSn  124 (890)
                      .    .    ..+...+       .+|++|.|+|+++
T Consensus        88 gA~~g~GLGn~fL~~ir-------~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVR-------AVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHT-------TCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhh-------ccceeEEEEeccC
Confidence            2    2    3333332       4999999999877

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.6e-07  Score=86.36  Aligned_cols=115  Identities=11%  Similarity=0.151  Sum_probs=86.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+..|...+..+...  -+.    ...++++|+|++.+.++ +.+++|+..++.+..                    
T Consensus        58 ~~i~Dt~G~~~~~~~~~~--~~~----~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~--------------------  110 (177)
T d1x3sa1          58 LAIWDTAGQERFRTLTPS--YYR----GAQGVILVYDVTRRDTF-VKLDNWLNELETYCT--------------------  110 (177)
T ss_dssp             EEEEEECSSGGGCCSHHH--HHT----TCCEEEEEEETTCHHHH-HTHHHHHHHHTTCCS--------------------
T ss_pred             EEEEECCCchhhHHHHHH--HHh----cCCEEEEEEECCCcccc-ccchhhhhhhccccc--------------------
Confidence            489999998776665554  121    22379999999999987 778888755432100                    


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                     ...+|+++|++|.|....      ....+.++.||..+|...|.||+|.
T Consensus       111 -------------------------------~~~~~i~~~~nk~d~~~~------~v~~~~~~~~~~~~~~~~~e~Sa~t  153 (177)
T d1x3sa1         111 -------------------------------RNDIVNMLVGNKIDKENR------EVDRNEGLKFARKHSMLFIEASAKT  153 (177)
T ss_dssp             -------------------------------CSCCEEEEEEECTTSSSC------CSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             -------------------------------ccceeeEEEeeccccccc------cccHHHHHHHHHHCCCEEEEEeCCC
Confidence                                           123789999999997632      2234456678999999999999999


Q ss_pred             hhhHHHHHHHHhhhhcCCC
Q psy11649        553 PGLVKRTRDILNHYAFSSH  571 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~fg~~  571 (890)
                      +.|++.++..|...++..|
T Consensus       154 g~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         154 CDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             CTTHHHHHHHHHHHHHTSG
T ss_pred             CCCHHHHHHHHHHHHccCc
Confidence            9999999999999888643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.17  E-value=1.2e-06  Score=83.95  Aligned_cols=115  Identities=12%  Similarity=0.103  Sum_probs=77.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -+.+|+++|...+....+.  -+.    ...++|+|+|.|.+.++ ..+.+|+.....+-.                   
T Consensus        57 ~~~i~D~~g~~~~~~~~~~--~~~----~~~~ii~v~D~s~~~~~-~~~~~~l~~~~~~~~-------------------  110 (173)
T d1e0sa_          57 KFNVWDVGGQDKIRPLWRH--YYT----GTQGLIFVVDCADRDRI-DEARQELHRIINDRE-------------------  110 (173)
T ss_dssp             EEEEEEESCCGGGHHHHGG--GTT----TCCEEEEEEETTCGGGH-HHHHHHHHHHHTSGG-------------------
T ss_pred             eeEEecCCCcchhhhHHHh--hhc----ccceEEEEEecccchhH-HHHHHHHHHHhhhcc-------------------
Confidence            4589999999877766554  122    23489999999999998 445555432211000                   


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~  550 (890)
                                                      ...+|++|||||+|+-......   .|++.+- ..+...+...+-||+
T Consensus       111 --------------------------------~~~~piiiv~NK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~e~SA  155 (173)
T d1e0sa_         111 --------------------------------MRDAIILIFANKQDLPDAMKPH---EIQEKLGLTRIRDRNWYVQPSCA  155 (173)
T ss_dssp             --------------------------------GTTCEEEEEEECTTSTTCCCHH---HHHHHTTGGGCCSSCEEEEECBT
T ss_pred             --------------------------------cccceeeeeeecccccccccHH---HHHHHHHHHHHHhCCCEEEEeeC
Confidence                                            0137999999999997443432   2444332 334445667788999


Q ss_pred             CChhhHHHHHHHHhhhh
Q psy11649        551 LDPGLVKRTRDILNHYA  567 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr~  567 (890)
                      |.+.|++.++++|..++
T Consensus       156 ~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         156 TSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             TTTBTHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHhc
Confidence            99999999999997653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.12  E-value=1.1e-06  Score=84.00  Aligned_cols=114  Identities=14%  Similarity=0.120  Sum_probs=75.6

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      -..+|+.+|...+....+.  .+.    ....+|+|+|.+.+.++ +.+..|+..+..+.                    
T Consensus        61 ~~~i~d~~g~~~~~~~~~~--~~~----~~~~ii~v~d~~d~~s~-~~~~~~~~~~~~~~--------------------  113 (176)
T d1fzqa_          61 KLNVWDIGGQRKIRPYWRS--YFE----NTDILIYVIDSADRKRF-EETGQELTELLEEE--------------------  113 (176)
T ss_dssp             EEEEEECSSCGGGHHHHHH--HHT----TCSEEEEEEETTCGGGH-HHHHHHHHHHTTCG--------------------
T ss_pred             eEeEeeccccccchhHHHH--Hhh----ccceeEEeeccccccch-hhhhhhhhhhhhhh--------------------
Confidence            3589999999776655444  122    12379999999999988 44444443221100                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHH-HHHHHcCCceeEecc
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLR-YLAHVNGASLLFHSS  550 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR-~fcl~yGAsL~ftS~  550 (890)
                                                     .+.++|++|||||+|+....+.+   .+.+.+. .++...++.+|.||+
T Consensus       114 -------------------------------~~~~~pillv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~SA  159 (176)
T d1fzqa_         114 -------------------------------KLSCVPVLIFANKQDLLTAAPAS---EIAEGLNLHTIRDRVWQIQSCSA  159 (176)
T ss_dssp             -------------------------------GGTTCCEEEEEECTTSTTCCCHH---HHHHHTTGGGCCSSCEEEEECCT
T ss_pred             -------------------------------ccCCCeEEEEEEeccccccccHH---HHHHHHHHHHHHhcCCEEEEEeC
Confidence                                           11248999999999998544432   2333322 334456778899999


Q ss_pred             CChhhHHHHHHHHhhh
Q psy11649        551 LDPGLVKRTRDILNHY  566 (890)
Q Consensus       551 K~~~n~~~l~kyi~hr  566 (890)
                      +.+.|++.++++|...
T Consensus       160 ~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         160 LTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             TTCTTHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999999988754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=7.5e-06  Score=87.57  Aligned_cols=58  Identities=16%  Similarity=0.103  Sum_probs=37.0

Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHHH-------cCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-------NGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~-------~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++=++|.||+|+..   .........+.+...+.       +..+++.|||++|.|+++|.+.|....
T Consensus       193 ~aDi~VvNKaD~~~---~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         193 VADLIVINKDDGDN---HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HCSEEEECCCCTTC---HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             cccEEEEEeecccc---hHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            34588899999842   01111122222222221       234699999999999999999997764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.07  E-value=2.9e-06  Score=80.31  Aligned_cols=115  Identities=16%  Similarity=0.076  Sum_probs=76.0

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+++|...+....+.  .+.    ...++++|+|.+.+.++-+..+.|...+...                      
T Consensus        48 ~~~~D~~G~~~~~~~~~~--~~~----~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~----------------------   99 (165)
T d1ksha_          48 LNIWDVGGQKSLRSYWRN--YFE----STDGLIWVVDSADRQRMQDCQRELQSLLVEE----------------------   99 (165)
T ss_dssp             EEEEEECCSHHHHTTGGG--GCT----TCSEEEEEEETTCGGGHHHHHHHHHHHHTCG----------------------
T ss_pred             eeeeecCcchhhhhHHHh--hhh----hhhcceeeeecccchhHHHHHHhhhhhhhhc----------------------
Confidence            489999999776655544  122    2348999999999999866655554332110                      


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHH-HHHHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRY-LAHVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~-fcl~yGAsL~ftS~K  551 (890)
                                                    ...++|++|||||+|+....+.++...   .+.. ....++..++.||+|
T Consensus       100 ------------------------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~  146 (165)
T d1ksha_         100 ------------------------------RLAGATLLIFANKQDLPGALSCNAIQE---ALELDSIRSHHWRIQGCSAV  146 (165)
T ss_dssp             ------------------------------GGTTCEEEEEEECTTSTTCCCHHHHHH---HTTGGGCCSSCEEEEECCTT
T ss_pred             ------------------------------ccCCCceEEEEeccccccccCHHHHHH---HHHhhhhhcCCCEEEEEECC
Confidence                                          012489999999999975455443321   1110 111223467889999


Q ss_pred             ChhhHHHHHHHHhhhhc
Q psy11649        552 DPGLVKRTRDILNHYAF  568 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~f  568 (890)
                      ++.|++.++++|.+.+.
T Consensus       147 ~g~gv~e~~~~l~~~i~  163 (165)
T d1ksha_         147 TGEDLLPGIDWLLDDIS  163 (165)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999987654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.04  E-value=7.7e-06  Score=87.30  Aligned_cols=59  Identities=12%  Similarity=-0.010  Sum_probs=36.7

Q ss_pred             CcEEEEeecccCCCCCCcchhhhhHHHHHHHHH-------HcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        176 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH-------VNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       176 IPiIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~-------~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                      ++=++|.||+|+....+  .........+...+       ....+++.|||+++.|++++.+.|....
T Consensus       190 ~aDi~vvNKaD~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         190 LADMIAVNKADDGDGER--RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HCSEEEEECCSTTCCHH--HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             hhheeeEeccccccchH--HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            45599999999742100  01111111111111       1345799999999999999999997764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.04  E-value=2.4e-06  Score=82.39  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=72.7

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++|+++|...+..+...  -.    -...++++|+|.+.+.++ .++..|+...-   ..                   
T Consensus        63 ~~i~D~~g~~~~~~~~~~--~~----~~~~~ii~v~d~~d~~s~-~~~~~~l~~~~---~~-------------------  113 (182)
T d1moza_          63 LNVWDLGGQTSIRPYWRC--YY----ADTAAVIFVVDSTDKDRM-STASKELHLML---QE-------------------  113 (182)
T ss_dssp             EEEEEEC----CCTTGGG--TT----TTEEEEEEEEETTCTTTH-HHHHHHHHHHT---TS-------------------
T ss_pred             EEEEecccccccchhHHh--hh----ccceeEEEEeeecccccc-hhHHHHHHHHH---Hh-------------------
Confidence            589999999777665554  11    233479999999999998 44555543211   10                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~K  551 (890)
                               .                    ...++|++|||||+|+-...+.++   +.+.+ -.++...++..+-||++
T Consensus       114 ---------~--------------------~~~~~piliv~NK~Dl~~~~~~~~---i~~~~~~~~~~~~~~~~~e~SA~  161 (182)
T d1moza_         114 ---------E--------------------ELQDAALLVFANKQDQPGALSASE---VSKELNLVELKDRSWSIVASSAI  161 (182)
T ss_dssp             ---------S--------------------TTSSCEEEEEEECTTSTTCCCHHH---HHHHTTTTTCCSSCEEEEEEBGG
T ss_pred             ---------h--------------------ccCCcceEEEEEeeccccccCHHH---HHHHHHHHHHhhCCCEEEEEECC
Confidence                     0                    012479999999999975444332   22222 12344567788999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.|++.++++|...+
T Consensus       162 ~g~gv~e~~~~l~~~i  177 (182)
T d1moza_         162 KGEGITEGLDWLIDVI  177 (182)
T ss_dssp             GTBTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999998887654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=5.2e-06  Score=80.45  Aligned_cols=113  Identities=11%  Similarity=0.038  Sum_probs=78.2

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..||+.+|...+.    +   ..    ...++|||+|++.+.++ +.++.|+..+...-..                   
T Consensus        54 l~i~Dt~g~~~~~----~---~~----~ad~~ilVfd~~~~~Sf-~~~~~~~~~i~~~~~~-------------------  102 (175)
T d2bmja1          54 VLIREEAGAPDAK----F---SG----WADAVIFVFSLEDENSF-QAVSRLHGQLSSLRGE-------------------  102 (175)
T ss_dssp             EEEEECSSCCCHH----H---HH----HCSEEEEEEETTCHHHH-HHHHHHHHHHHHHCC--------------------
T ss_pred             EEEeecccccccc----c---cc----ccceeEEEeecccchhh-hhhHHHHHHHHHHhhc-------------------
Confidence            3899999985543    2   11    12388999999999999 8899998877552111                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH-cCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV-NGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~-yGAsL~ftS~K  551 (890)
                                .                    +-.+|+++||+|.|+-..-+.+   .-...+..+|.+ +++..+.||+|
T Consensus       103 ----------~--------------------~~~~pi~lV~~k~d~d~~~~~~---v~~~~~~~~~~~~~~~~~~e~SAk  149 (175)
T d2bmja1         103 ----------G--------------------RGGLALALVGTQDRISASSPRV---VGDARARALCADMKRCSYYETCAT  149 (175)
T ss_dssp             -------------------------------CCCCEEEEEEECTTCCSSSCCC---SCHHHHHHHHHTSTTEEEEEEBTT
T ss_pred             ----------c--------------------cCCccEEEEeeecCcchhhhcc---hhHHHHHHHHHHhCCCeEEEeCCC
Confidence                      0                    0137899999999974221111   112345666655 56677889999


Q ss_pred             ChhhHHHHHHHHhhhhcC
Q psy11649        552 DPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~fg  569 (890)
                      .+.|++.++..|..+++.
T Consensus       150 ~~~~v~~~F~~l~~~i~~  167 (175)
T d2bmja1         150 YGLNVDRVFQEVAQKVVT  167 (175)
T ss_dssp             TTBTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999888764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=0.00021  Score=73.96  Aligned_cols=25  Identities=24%  Similarity=0.514  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKN   59 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~   59 (890)
                      ..+|+|+|..++|||||+|.|+|..
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCC
Confidence            3479999999999999999999954

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.56  E-value=5e-05  Score=70.08  Aligned_cols=115  Identities=14%  Similarity=0.075  Sum_probs=77.8

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|...+......      .-.....+++++|.+.+.++ ..+..|...+..+.                     
T Consensus        46 ~~~~d~~g~~~~~~~~~~------~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~---------------------   97 (160)
T d1r8sa_          46 FTVWDVGGQDKIRPLWRH------YFQNTQGLIFVVDSNDRERV-NEAREELMRMLAED---------------------   97 (160)
T ss_dssp             EEEEECCCCGGGHHHHHH------HTTTCSEEEEEEETTCGGGH-HHHHHHHHHHHTCG---------------------
T ss_pred             EEEecCCCcccchhhhhh------hhccceeEEEEEEecChHHH-HHHHHHHHHHHHhh---------------------
Confidence            478999998666554333      11223478999999999987 44444443332100                     


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLD  552 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~  552 (890)
                                                    ....+|+++|++|.|.-...+.  .+........+|...|..++.||+|.
T Consensus        98 ------------------------------~~~~~~i~~v~~k~d~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~SAkt  145 (160)
T d1r8sa_          98 ------------------------------ELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNWYIQATCATS  145 (160)
T ss_dssp             ------------------------------GGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred             ------------------------------cccCceEEEEeecccccccccH--HHHHHHHHHHHHhhCCCEEEEeECCC
Confidence                                          0123789999999998743332  22333333456777888999999999


Q ss_pred             hhhHHHHHHHHhhhh
Q psy11649        553 PGLVKRTRDILNHYA  567 (890)
Q Consensus       553 ~~n~~~l~kyi~hr~  567 (890)
                      +.|++.++++|.+++
T Consensus       146 g~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         146 GDGLYEGLDWLSNQL  160 (160)
T ss_dssp             TBTHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHhcC
Confidence            999999999999875

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.53  E-value=0.00022  Score=74.22  Aligned_cols=24  Identities=21%  Similarity=0.553  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKN   59 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~   59 (890)
                      .+|+|||+.++|||||+|.|+|..
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCC
Confidence            479999999999999999999954

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=0.00035  Score=66.52  Aligned_cols=55  Identities=22%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      +|+|||+||+|+... .++       .++.+...+| +..+++|+|++.|++.|++.|...+.-
T Consensus       116 ~piilv~NK~Dl~~~-~~~-------~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         116 VPILLVGNKLDAAKY-PEE-------AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             SCEEEEEECGGGCSS-HHH-------HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             hhhhhhhcccccccC-HHH-------HHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence            689999999999743 122       1223333444 578999999999999999999987754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.30  E-value=7.4e-05  Score=77.32  Aligned_cols=55  Identities=27%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHcCC---CCCCCCccceeEEEEEEeccccceEEEEEEcCCC
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLEKN---DTPKPTLALEYIYARKSGKTVMKDICHLWELGSG   93 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~~~---~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~   93 (890)
                      ....+|+|||-||||||||+|+|.++.   ....|+++-+...    ...  +..+.+.||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~----i~~--~~~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW----VKV--GKELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC----EEE--TTTEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE----EEC--CCCeEEecCCCc
Confidence            357899999999999999999999953   2334555543211    111  125999999996

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.09  E-value=0.0008  Score=61.96  Aligned_cols=59  Identities=10%  Similarity=0.004  Sum_probs=48.4

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      .|++||++|.|+......+  +..+...+.+|...++..+.||++.+.|++.+++.|.+.+
T Consensus       107 ~~i~iv~nk~Dl~~~~~~~--~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l  165 (169)
T d1upta_         107 AILVVFANKQDMEQAMTSS--EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL  165 (169)
T ss_dssp             CEEEEEEECTTSTTCCCHH--HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ceEEEEEeeccccccccHH--HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            6889999999998644433  3445556778888899999999999999999999998765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.04  E-value=0.0017  Score=61.64  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCch----------hHHHHHHHHHHHHHHHHHhhhhHHhh
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN----------SLWTEAETFLAKFRAIFESNESVREK  460 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw----------~l~~sL~~W~~~~r~~i~~~~~~~~~  460 (890)
                      -..++|+++|+..+..+...  -.    -....+++++|++.+-          .+-++++.|...++....        
T Consensus        45 ~~~~~~d~~g~~~~~~~~~~--~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~--------  110 (200)
T d2bcjq2          45 VIFRMVDVGGQRSERRKWIH--CF----ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF--------  110 (200)
T ss_dssp             CEEEEEECCCSTTGGGGGGG--GC----SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGG--------
T ss_pred             eeeeeccccccccccccccc--cc----cccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhc--------
Confidence            34589999999776655444  11    2233789999998864          455777777777654211        


Q ss_pred             cccccccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------CCh--h
Q psy11649        461 RGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------LEP--N  525 (890)
Q Consensus       461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~~~--E  525 (890)
                                                                  -.+|+++|++|.|++..             ...  +
T Consensus       111 --------------------------------------------~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  146 (200)
T d2bcjq2         111 --------------------------------------------QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQR  146 (200)
T ss_dssp             --------------------------------------------SSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSS
T ss_pred             --------------------------------------------cCccEEEecchhhhhhhcccchHHHHhcccccCCch
Confidence                                                        13789999999998621             000  0


Q ss_pred             HHHHHHHHHHHHHHHcCCc------eeEeccCChhhHHHHHHHHhhhh
Q psy11649        526 KKRIAVQCLRYLAHVNGAS------LLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       526 ~~d~Iq~~lR~fcl~yGAs------L~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ........+..-++.+...      .+|||+|.+.|++.++.-|...+
T Consensus       147 ~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I  194 (200)
T d2bcjq2         147 DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI  194 (200)
T ss_dssp             CHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence            0112222222233333221      47899999999999997775443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.04  E-value=0.00056  Score=64.29  Aligned_cols=114  Identities=12%  Similarity=0.042  Sum_probs=69.5

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      ..+|+.+|..........  -    ......+++++|++....+ +....|......+                      
T Consensus        61 ~~~~d~~~~~~~~~~~~~--~----~~~~~~~i~v~d~~d~~~~-~~~~~~~~~~~~~----------------------  111 (177)
T d1zj6a1          61 FLMWDIGGQESLRSSWNT--Y----YTNTEFVIVVVDSTDRERI-SVTREELYKMLAH----------------------  111 (177)
T ss_dssp             EEEEECCC----CGGGHH--H----HTTCCEEEEEEETTCTTTH-HHHHHHHHHHHTS----------------------
T ss_pred             EEEeccccccccccchhh--h----hccceeeeeecccccccch-hhhhhhhhhhhhc----------------------
Confidence            378999988666654444  1    1223478999999998876 3333332211110                      


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEeccC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSSL  551 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~K  551 (890)
                                                   ....++|++||+||+|+-..-..+   .+.+.+ ..++...++..+.||+|
T Consensus       112 -----------------------------~~~~~~p~iiv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~Sa~  159 (177)
T d1zj6a1         112 -----------------------------EDLRKAGLLIFANKQDVKECMTVA---EISQFLKLTSIKDHQWHIQACCAL  159 (177)
T ss_dssp             -----------------------------GGGTTCEEEEEEECTTSTTCCCHH---HHHHHHTGGGCCSSCEEEEECBTT
T ss_pred             -----------------------------ccccceEEEEEEEcccccccCcHH---HHHHHHHHHhhHhcCCEEEEEeCC
Confidence                                         011358999999999986432222   222222 22334467888999999


Q ss_pred             ChhhHHHHHHHHhhhh
Q psy11649        552 DPGLVKRTRDILNHYA  567 (890)
Q Consensus       552 ~~~n~~~l~kyi~hr~  567 (890)
                      .+.+++.+.+||...+
T Consensus       160 tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         160 TGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TTBTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.0014  Score=65.90  Aligned_cols=84  Identities=12%  Similarity=0.157  Sum_probs=57.5

Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .+.|.+++|+.+.+|.--..-|++|+-.+.                                ..++|.+||.||+|+.. 
T Consensus         9 ANiD~vliV~s~~~P~~~~~~ldR~Lv~a~--------------------------------~~~i~pvIvlnK~DL~~-   55 (225)
T d1u0la2           9 ANVDQVILVVTVKMPETSTYIIDKFLVLAE--------------------------------KNELETVMVINKMDLYD-   55 (225)
T ss_dssp             ESCCEEEEEECSSTTCCCHHHHHHHHHHHH--------------------------------HTTCEEEEEECCGGGCC-
T ss_pred             ccCCEEEEEEeCCCCCCCHHHHHHHHHHHH--------------------------------HcCCCEEEEEeCcccCC-
Confidence            468999999999887543245566654222                                23799999999999963 


Q ss_pred             CCcchhhhhHHHHHHHHHH--cCCeEEEEeccCCCCHHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHV--NGASLLFHSSLDPGLVKRTRDILN  233 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~--~Ga~l~etSAK~~~nId~Lk~~I~  233 (890)
                        ++.    .+....+...  .+.+++.+|++++.+++.|++++.
T Consensus        56 --~~~----~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          56 --EDD----LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             --HHH----HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             --HHH----HHHHHHhhcccccceeEEEeccccchhHhhHHHHhc
Confidence              111    1222333332  346789999999999999988764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.0034  Score=59.37  Aligned_cols=54  Identities=19%  Similarity=0.177  Sum_probs=42.2

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      +|+|+|+||+|+..   ++..+.+.    ......|...|++|++.+.|++.|++.|.-.+
T Consensus       114 ~p~iiv~NK~D~~~---~~~~~~~~----~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l  167 (180)
T d1udxa2         114 RPSLVALNKVDLLE---EEAVKALA----DALAREGLAVLPVSALTGAGLPALKEALHALV  167 (180)
T ss_dssp             SCEEEEEECCTTSC---HHHHHHHH----HHHHTTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhh---HHHHHHHH----HHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            68999999999973   34433333    33446799999999999999999999886655

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.0016  Score=61.63  Aligned_cols=129  Identities=13%  Similarity=0.112  Sum_probs=70.3

Q ss_pred             ceeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccc
Q psy11649        391 DICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTA  470 (890)
Q Consensus       391 di~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~  470 (890)
                      .-.++|+.+|+..+..+...   .-.   ....+++|+|++.+..+ ..+..|...+.+...........          
T Consensus        42 ~~~~i~D~~Gq~~~~~~~~~---~~~---~~~~~i~v~d~~~~~~~-~~~~~~~~~~~e~~~~~~~i~~~----------  104 (195)
T d1svsa1          42 LHFKMFDVGGQRSERKKWIH---CFE---GVTAIIFCVALSDYDLV-LAEDEEMNRMHESMKLFDSICNN----------  104 (195)
T ss_dssp             EEEEEEEECCSGGGGGGGGG---GCT---TCSEEEEEEEGGGGGCB-CSSCTTSBHHHHHHHHHHHHHTC----------
T ss_pred             eeeeeeccccccccccchhh---ccc---CCceeeeEEeecccchH-HHHhhhhHHHHHHHHHHHHHhcc----------
Confidence            34589999999777766554   111   23378999999888754 22222322222222211000000          


Q ss_pred             cccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC----------C----C----hhHHHHHHH
Q psy11649        471 DEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN----------L----E----PNKKRIAVQ  532 (890)
Q Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~----------~----~----~E~~d~Iq~  532 (890)
                                                     ...-++|+++|++|.|++..          +    .    .+-..++..
T Consensus       105 -------------------------------~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (195)
T d1svsa1         105 -------------------------------KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQC  153 (195)
T ss_dssp             -------------------------------GGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHH
T ss_pred             -------------------------------cccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHH
Confidence                                           01124799999999998521          0    0    111122322


Q ss_pred             HHHHHHHHcCC-ce--eEeccCChhhHHHHHHHHhhhh
Q psy11649        533 CLRYLAHVNGA-SL--LFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       533 ~lR~fcl~yGA-sL--~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      .....+...+. .+  +|||+|++.|++.+++.+...+
T Consensus       154 ~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i  191 (195)
T d1svsa1         154 QFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI  191 (195)
T ss_dssp             HHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence            22222222221 23  4699999999999998876654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.0011  Score=63.46  Aligned_cols=122  Identities=16%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHH------HHHHHHHHHHHHHHHhhhhHHhhccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLW------TEAETFLAKFRAIFESNESVREKRGSFE  465 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~------~sL~~W~~~~r~~i~~~~~~~~~~~~~~  465 (890)
                      ...+|+.+|+.........      .--....+++++|.+....++      +.++.|.......+..            
T Consensus        45 ~~~~~D~~gq~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------  106 (200)
T d1zcba2          45 PFKMVDVGGQRSERKRWFE------CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN------------  106 (200)
T ss_dssp             EEEEEEECC-------CTT------SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC------------
T ss_pred             eeeeecccceeeecccccc------cccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhC------------
Confidence            4589999999655543333      112234788999999865432      3344444444333321            


Q ss_pred             ccccccccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccC-------------CC--hhHHHHH
Q psy11649        466 HFRTADEHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFEN-------------LE--PNKKRIA  530 (890)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~-------------~~--~E~~d~I  530 (890)
                                                          ....++|++||++|.|++.+             +.  ++..+..
T Consensus       107 ------------------------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~  150 (200)
T d1zcba2         107 ------------------------------------RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDV  150 (200)
T ss_dssp             ------------------------------------GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHH
T ss_pred             ------------------------------------hhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHH
Confidence                                                00124899999999998631             11  1112333


Q ss_pred             HHHHHHHHHH----cCCc---eeEeccCChhhHHHHHHHHhhhh
Q psy11649        531 VQCLRYLAHV----NGAS---LLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       531 q~~lR~fcl~----yGAs---L~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      +..++.....    .+.-   -+|||+++..|++.++..+..-+
T Consensus       151 ~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         151 QKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             HHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence            3333333332    2221   24699999999999888765433

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.71  E-value=0.0027  Score=60.97  Aligned_cols=59  Identities=17%  Similarity=0.144  Sum_probs=43.2

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHH-HHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCL-RYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~l-R~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|++||.||+|++   ++++.....+.+ +.+-...++..+.+|++.+.+++.|++.|...+
T Consensus       134 ~~piivv~NK~D~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         134 GIPVIVIATKADKI---PKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCCEEEEEECGGGS---CGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCcceechhhcccc---CHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            47899999999997   333433333333 344445667899999999999999999987654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.0027  Score=60.13  Aligned_cols=58  Identities=19%  Similarity=0.121  Sum_probs=42.4

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHc-CCceeEeccCChhhHHHHHHHHh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVN-GASLLFHSSLDPGLVKRTRDILN  564 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~y-GAsL~ftS~K~~~n~~~l~kyi~  564 (890)
                      ++|+|+|++|.|+..+-+.. .+.+.+.++...... .+.++++|+|++.|++.|.+-|.
T Consensus       120 ~~~~i~v~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~  178 (186)
T d1mkya2         120 GRASVVVFNKWDLVVHREKR-YDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN  178 (186)
T ss_dssp             TCEEEEEEECGGGSTTGGGC-HHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCceeeeccchhhhcchhhh-hhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            36889999999998654332 344444555444433 47899999999999999998874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.55  E-value=0.00067  Score=68.59  Aligned_cols=87  Identities=16%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             ccCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCC
Q psy11649        111 QSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFEN  190 (890)
Q Consensus       111 ~~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d  190 (890)
                      .+.|.+++|+++.+|.--..-+++++-.+                                ...++|.+||.||+||..+
T Consensus         9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a--------------------------------~~~~i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSFSTALLDRFLVLV--------------------------------EANDIQPIICITKMDLIED   56 (231)
T ss_dssp             ECCCEEEEEEESTTTTCCHHHHHHHHHHH--------------------------------HTTTCEEEEEEECGGGCCC
T ss_pred             cccCEEEEEEECCCCCCCHHHHHHHHHHH--------------------------------HHcCCCEEEEEeccccccc
Confidence            46899999999988753224555555321                                2247999999999999742


Q ss_pred             CCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHH
Q psy11649        191 LEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDIL  232 (890)
Q Consensus       191 ~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I  232 (890)
                         +......+.........|.+++.+|++++.|+++|++++
T Consensus        57 ---~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          57 ---QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             ---HHHHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence               111111222333445568999999999999998887654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0052  Score=55.63  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=72.3

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhccccccccccc
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTAD  471 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~  471 (890)
                      ...+|...|+..+..+...  ...    ....+++++|++.+-.+....+ |......+.                    
T Consensus        45 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~--------------------   97 (166)
T d2qtvb1          45 KFTTFDLGGHIQARRLWKD--YFP----EVNGIVFLVDAADPERFDEARV-ELDALFNIA--------------------   97 (166)
T ss_dssp             CEEEEECCCSGGGGGGGGG--GCT----TCSEEEEEEETTCGGGHHHHHH-HHHHHHTCT--------------------
T ss_pred             eEEEEeeccchhhhhhHhh--hhh----heeeeeeeccccchhhhhhhhH-HHHhhhhhh--------------------
Confidence            4578999998766655554  222    2337899999999988744433 322221110                    


Q ss_pred             ccccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHH-----HHHHHHHHHcCCcee
Q psy11649        472 EHRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAV-----QCLRYLAHVNGASLL  546 (890)
Q Consensus       472 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq-----~~lR~fcl~yGAsL~  546 (890)
                                                     ....+|+++|++|.|+......++-....     .-...+....+...|
T Consensus        98 -------------------------------~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  146 (166)
T d2qtvb1          98 -------------------------------ELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVF  146 (166)
T ss_dssp             -------------------------------TTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEE
T ss_pred             -------------------------------ccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEE
Confidence                                           01237899999999998665544432110     011222333455689


Q ss_pred             EeccCChhhHHHHHHHHhh
Q psy11649        547 FHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       547 ftS~K~~~n~~~l~kyi~h  565 (890)
                      .||++.+.+++.+++||..
T Consensus       147 ~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         147 MCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEBTTTTBSHHHHHHHHTT
T ss_pred             EeeCCCCCCHHHHHHHHhC
Confidence            9999999999999999863

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.24  E-value=0.0029  Score=60.33  Aligned_cols=59  Identities=12%  Similarity=0.113  Sum_probs=45.0

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHH----cCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHV----NGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~----yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      |+|++||+||.|+.   +.+..+...+.++.+...    .++..|++|++.+.|++.|+++|...+
T Consensus       111 ~~p~iiv~NKiD~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l  173 (179)
T d1wb1a4         111 NIPIIVVITKSDNA---GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTL  173 (179)
T ss_dssp             TCCBCEEEECTTSS---CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCcceecccccccc---CHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcC
Confidence            68999999999987   444444455555554433    246889999999999999999998765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.08  E-value=0.01  Score=58.58  Aligned_cols=37  Identities=11%  Similarity=0.167  Sum_probs=25.1

Q ss_pred             eeEEEEeCCCcccccccccccccccccccceEEEEEEeCCCch
Q psy11649        392 ICHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLN  434 (890)
Q Consensus       392 i~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw  434 (890)
                      -.++|++||+..+...-..  -    --...++++++|+|.-.
T Consensus        48 ~~~~~D~~Gq~~~r~~w~~--~----~~~~~~ii~v~d~s~~~   84 (221)
T d1azta2          48 NFHMFDVGGQRDERRKWIQ--C----FNDVTAIIFVVASSSYN   84 (221)
T ss_dssp             EEEEEECCCSTTTTTGGGG--G----CTTCSEEEEEEETTGGG
T ss_pred             EEEEEecCccceeccchhh--h----cccccceEEEEEccccc
Confidence            3489999999877654433  1    11234899999999653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.98  E-value=0.0061  Score=62.40  Aligned_cols=82  Identities=13%  Similarity=0.042  Sum_probs=57.6

Q ss_pred             cCcEEEEEEeCCCcCchHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccCCCCcEEEEeecccCCCCC
Q psy11649        112 SGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADEHRDKGLIRTFPVPLILIGGKYDLFENL  191 (890)
Q Consensus       112 ~ad~IIIV~DlSnp~S~~~~L~~wlq~I~e~~~~ll~~~~~~~~l~~~~~~~~~~d~~li~~l~IPiIVVgNK~Dl~~d~  191 (890)
                      .+|+||.|+|...|-+..+   ..+.   +.                            +.  +.|+++|.||+|+.   
T Consensus        15 ~~DvIl~V~DaR~P~ss~~---~~l~---~~----------------------------~~--~Kp~IlVlNK~DLv---   55 (273)
T d1puja_          15 LIDIVYELVDARIPMSSRN---PMIE---DI----------------------------LK--NKPRIMLLNKADKA---   55 (273)
T ss_dssp             GCSEEEEEEETTSTTTTSC---HHHH---HH----------------------------CS--SSCEEEEEECGGGS---
T ss_pred             hCCEEEEEEECCCCCCCCC---HHHH---HH----------------------------Hc--CCCeEEEEECccCC---
Confidence            5999999999999877421   1111   11                            11  47999999999996   


Q ss_pred             CcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHHHHHHHHHH
Q psy11649        192 EPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  236 (890)
Q Consensus       192 d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~Lk~~I~~~l  236 (890)
                         .........+.| ...+...+++|++++.++..+.+.+...+
T Consensus        56 ---~~~~~~~w~~~f-~~~~~~~i~isa~~~~~~~~~~~~~~~~l   96 (273)
T d1puja_          56 ---DAAVTQQWKEHF-ENQGIRSLSINSVNGQGLNQIVPASKEIL   96 (273)
T ss_dssp             ---CHHHHHHHHHHH-HTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             ---chHHHHHHHHHH-HhcCCccceeecccCCCccccchhhhhhh
Confidence               233344444444 44567889999999999998887776665

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0012  Score=61.15  Aligned_cols=50  Identities=22%  Similarity=0.222  Sum_probs=37.8

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      ++|+|||+||+|+..+-....            ...+...|++|+|++.|++.|++.|...+
T Consensus       112 ~~~iilv~NK~Dl~~~~~~~~------------~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         112 KLPITVVRNKADITGETLGMS------------EVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TCCEEEEEECHHHHCCCCEEE------------EETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             ccceeeccchhhhhhhHHHHH------------HhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            479999999999864211110            12467899999999999999999997653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.71  E-value=0.0023  Score=59.86  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +||+|+|++|||||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999987

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.025  Score=56.00  Aligned_cols=21  Identities=38%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~   58 (890)
                      .+|-|.-|+|||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            588999999999999999874

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.62  E-value=0.0022  Score=60.46  Aligned_cols=61  Identities=11%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             CCCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649        505 FPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       505 lgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      .++|+|||+||+|...+- ++..+.+++.+..-........+.+|++.+.|++.|++.|...
T Consensus       120 ~~~p~iiv~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~  180 (184)
T d2cxxa1         120 LDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEV  180 (184)
T ss_dssp             TTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCCEEEEEeeeehhhhH-HHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            479999999999988532 2222333322221111222347889999999999999998654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.61  E-value=0.0026  Score=59.74  Aligned_cols=56  Identities=13%  Similarity=-0.000  Sum_probs=40.7

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++|+|||++|+|+....    ...+..   .++....+..|++|+|++.|++.|+++|...+.
T Consensus       109 ~~pviiv~NK~Dl~~~~----~~~~~~---~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~  164 (171)
T d1mkya1         109 TVDTILVANKAENLREF----EREVKP---ELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE  164 (171)
T ss_dssp             TCCEEEEEESCCSHHHH----HHHTHH---HHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhh----hhHHHH---HHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCC
Confidence            47899999999987422    211111   223334567899999999999999999988764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.43  E-value=0.0031  Score=58.48  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .++|+|+|.+|||||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999999873

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.35  E-value=0.031  Score=55.03  Aligned_cols=22  Identities=32%  Similarity=0.616  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .-|+++|++||||||.+-+|..
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4579999999999999988865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.021  Score=56.54  Aligned_cols=40  Identities=13%  Similarity=-0.060  Sum_probs=27.6

Q ss_pred             EEEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649        178 LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       178 iIVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L  228 (890)
                      --+|.+|.|..      .+-+   .+-.++...+.++.+++  .|++++.+
T Consensus       157 ~~lIlTKlDe~------~~~G---~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         157 TGITLTKLDGT------AKGG---VIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             CEEEEECCTTC------TTTT---HHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             ceEEEeecCCC------CCcc---HHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            46779999974      2221   24456777899999988  77777553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.26  E-value=0.0083  Score=59.49  Aligned_cols=39  Identities=18%  Similarity=0.055  Sum_probs=27.5

Q ss_pred             EEEeecccCCCCCCcchhhhhHHHHHHHHHHcCCeEEEEeccCCCCHHHH
Q psy11649        179 ILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRT  228 (890)
Q Consensus       179 IVVgNK~Dl~~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK~~~nId~L  228 (890)
                      -+|.||.|..      .+   .-.+-.++...+.++.++|  .|++++.|
T Consensus       157 ~lI~TKlDet------~~---~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         157 TIIITKMDGT------AK---GGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             EEEEECTTSC------SC---HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             eEEEecccCC------Cc---ccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence            4679999974      22   2345566788899999988  67777543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.031  Score=55.74  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=42.9

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      |||.|||.||+|+.   +++..+.+...+..+.  .|...+++|++.+..++.|++++..+
T Consensus        41 ~i~pvIvlnK~DL~---~~~~~~~~~~~~~~~~--~~~~v~~vSa~~~~g~~~L~~~l~~k   96 (225)
T d1u0la2          41 ELETVMVINKMDLY---DEDDLRKVRELEEIYS--GLYPIVKTSAKTGMGIEELKEYLKGK   96 (225)
T ss_dssp             TCEEEEEECCGGGC---CHHHHHHHHHHHHHHT--TTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             CCCEEEEEeCcccC---CHHHHHHHHHhhcccc--cceeEEEeccccchhHhhHHHHhcCC
Confidence            68899999999997   4555555555554443  34678999999999999999998643

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.06  E-value=0.0057  Score=56.65  Aligned_cols=27  Identities=22%  Similarity=0.383  Sum_probs=24.0

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      +++.++|+|.|.+||||||+.+.|..+
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            466789999999999999999999863

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.60  E-value=0.062  Score=51.41  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=25.5

Q ss_pred             CCcEEEEEeccccccCCChhH-HHHHHHHHHHHHHHcCC
Q psy11649        506 PVPLILIGGKYDLFENLEPNK-KRIAVQCLRYLAHVNGA  543 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~-~d~Iq~~lR~fcl~yGA  543 (890)
                      .+|++|||||+|+....+.+. .+.+++.+..+.....+
T Consensus       108 ~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~  146 (207)
T d2fh5b1         108 SPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSA  146 (207)
T ss_dssp             CCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhcccc
Confidence            489999999999986555444 35666666655554433

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.009  Score=54.89  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|.+|||||||+++|..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999986

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.27  E-value=0.031  Score=53.21  Aligned_cols=103  Identities=18%  Similarity=0.119  Sum_probs=60.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|+.+|.........-  .+.........+++++|.+....-++....|+..+......                   
T Consensus        48 ~~l~D~~g~~~~~~~~~~--~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~-------------------  106 (209)
T d1nrjb_          48 VTLVDFPGHVKLRYKLSD--YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITES-------------------  106 (209)
T ss_dssp             CEEEECCCCGGGTHHHHH--HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHH-------------------
T ss_pred             EEEEecccccchhhHHHH--HHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHH-------------------
Confidence            479999998765544332  12222223346777888776554446666666554433332                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChh-HHHHHHHHHHHHHHHcCCce
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPN-KKRIAVQCLRYLAHVNGASL  545 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E-~~d~Iq~~lR~fcl~yGAsL  545 (890)
                                                   ...-++|++|||+|+|+...-..+ ..+.+++.+..++...++.+
T Consensus       107 -----------------------------~~~~~~piiiv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  151 (209)
T d1nrjb_         107 -----------------------------SCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL  151 (209)
T ss_dssp             -----------------------------HSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------HHhccCCeEEEEEeecccccCcHHHHHHHHHHHHHHHHHHHcCCC
Confidence                                         001258999999999997544433 34566666666665555443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=94.20  E-value=0.0091  Score=54.91  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -.+|+|+|.|||||||+.++|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999976

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.15  E-value=0.038  Score=53.51  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=44.0

Q ss_pred             CC-cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC---CceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 gi-PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG---AsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      |+ |+||+.+|.|+.   +.++...+...++.+-..++   ++.|+.|++++.|++.|.+.|..++-
T Consensus       139 ~i~~iIV~vNK~Dl~---~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         139 GVKNLIIVQNKVDVV---SKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             TCCCEEEEEECGGGS---CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCceeeeccccCCCc---cchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            55 789999999997   34444444444555444443   56899999999999999999988753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.89  E-value=0.11  Score=47.02  Aligned_cols=51  Identities=10%  Similarity=0.106  Sum_probs=39.1

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhh
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNH  565 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~h  565 (890)
                      .|+++|.+|.|.....+.+.   +.     ..+..++..|++|+|++.|++.|++.|..
T Consensus       108 ~~~i~~~~k~d~~~~~~~~~---~~-----~~~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         108 KRYLVVINKVDVVEKINEEE---IK-----NKLGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             SSEEEEEEECSSCCCCCHHH---HH-----HHHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             ccceeeeeeccccchhhhHH---HH-----HHhCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            35789999999997655432   21     13346789999999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.80  E-value=0.016  Score=55.18  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.++|+|+|.|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999986

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.48  E-value=0.018  Score=52.15  Aligned_cols=20  Identities=40%  Similarity=0.589  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~   57 (890)
                      |+|.|.||||||||.++|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999876

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.46  E-value=0.038  Score=55.32  Aligned_cols=56  Identities=16%  Similarity=0.089  Sum_probs=43.1

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHh
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILN  564 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~  564 (890)
                      |||.|||.||+|+..+  .|..+.+++.+ ......|-.++++|++++.+++.|+++|.
T Consensus        41 ~i~pvIvlnK~DL~~~--~~~~~~~~~~~-~~y~~~g~~v~~~Sa~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          41 DIQPIICITKMDLIED--QDTEDTIQAYA-EDYRNIGYDVYLTSSKDQDSLADIIPHFQ   96 (231)
T ss_dssp             TCEEEEEEECGGGCCC--HHHHHHHHHHH-HHHHHHTCCEEECCHHHHTTCTTTGGGGT
T ss_pred             CCCEEEEEeccccccc--HHHHHHHHHHH-HHHhhccccceeeecCChhHHHHHHHhhc
Confidence            6888999999999842  34445554444 44456799999999999999999988874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.44  E-value=0.018  Score=53.86  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|+|.|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.38  E-value=0.018  Score=54.25  Aligned_cols=56  Identities=11%  Similarity=0.034  Sum_probs=41.8

Q ss_pred             CCcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcCCceeEeccCChhhHHHHHHHHhhhhc
Q psy11649        506 PVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGASLLFHSSLDPGLVKRTRDILNHYAF  568 (890)
Q Consensus       506 giPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGAsL~ftS~K~~~n~~~l~kyi~hr~f  568 (890)
                      ++|+|||+||+|+...     .+.+.. +++ ++..|...|++|++.+.+++.|++.|..++=
T Consensus       117 ~kp~ivv~NK~Dl~~~-----~~~~~~-~~~-~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         117 ERPQIIVANKMDMPEA-----AENLEA-FKE-KLTDDYPVFPISAVTREGLRELLFEVANQLE  172 (185)
T ss_dssp             TSCBCBEEECTTSTTH-----HHHHHH-HHH-HCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             CCcchhhccccchHhH-----HHHHHH-HHH-HhccCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence            4799999999999732     122222 221 2346889999999999999999999988874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.016  Score=53.29  Aligned_cols=22  Identities=41%  Similarity=0.670  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.|+|.|++|||||||+.++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            3599999999999999999986

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.28  E-value=0.017  Score=53.79  Aligned_cols=20  Identities=30%  Similarity=0.549  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~   57 (890)
                      +.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999986

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.067  Score=49.34  Aligned_cols=27  Identities=15%  Similarity=0.256  Sum_probs=23.9

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      .....+|+|+|.+|||||||+|+|++.
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCC
Confidence            455789999999999999999999885

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.24  E-value=0.093  Score=48.13  Aligned_cols=116  Identities=15%  Similarity=0.145  Sum_probs=66.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      +.+|..+|.........-      ..-....+++++|.+.+....+..+.|......                       
T Consensus        59 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~-----------------------  109 (186)
T d1f6ba_          59 FTTFDLGGHIQARRVWKN------YLPAINGIVFLVDCADHERLLESKEELDSLMTD-----------------------  109 (186)
T ss_dssp             EEEEEECC----CCGGGG------GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC-----------------------
T ss_pred             cccccccchhhhhhHHhh------hhcccceeeeeeeccCccchHHHHHHHHHhhcc-----------------------
Confidence            468999888665543322      122344899999999998885555544221100                       


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCCcEEEEEeccccccCCChhHHHHHHHHHHHHHH----------HcC
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPVPLILIGGKYDLFENLEPNKKRIAVQCLRYLAH----------VNG  542 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgiPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl----------~yG  542 (890)
                             .                      ....+|++|+++|.|+......++...++..-.....          ..+
T Consensus       110 -------~----------------------~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  160 (186)
T d1f6ba_         110 -------E----------------------TIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARP  160 (186)
T ss_dssp             -------G----------------------GGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred             -------c----------------------ccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCC
Confidence                   0                      0113799999999999766665543222110000000          011


Q ss_pred             CceeEeccCChhhHHHHHHHHhhh
Q psy11649        543 ASLLFHSSLDPGLVKRTRDILNHY  566 (890)
Q Consensus       543 AsL~ftS~K~~~n~~~l~kyi~hr  566 (890)
                      -..+-||++.+.|++.++++|...
T Consensus       161 ~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         161 LEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHh
Confidence            135669999999999999988754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.20  E-value=0.02  Score=54.48  Aligned_cols=21  Identities=14%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      =|+++|.||||||||.++|+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999986

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.10  E-value=0.022  Score=51.95  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -|+|.|.+||||||+.++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999986

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.09  E-value=0.022  Score=53.78  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|+|.|||||||+..+|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999987

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.02  Score=51.50  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.|+|+|.+||||||+...|..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.027  Score=53.20  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|+|+|.|||||||+...|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999987

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.81  E-value=0.026  Score=53.13  Aligned_cols=22  Identities=32%  Similarity=0.542  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|+|.|||||||+..+|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999986

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.80  E-value=0.031  Score=53.65  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             ccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         33 SQERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        33 ~~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .+.++|+|+|.|||||||+..+|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999987

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=92.70  E-value=0.031  Score=53.07  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..-|+|+|.|||||||+..+|..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999999987

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.50  E-value=0.026  Score=53.60  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|+|+|.|||||||+...|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999976

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.031  Score=52.43  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|+|+|.|||||||+..+|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999876

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.03  E-value=0.051  Score=51.38  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             CccceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         32 QSQERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        32 ~~~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .+...=|+++|.|||||||+..++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999999865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.11  Score=53.05  Aligned_cols=58  Identities=16%  Similarity=0.053  Sum_probs=38.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcCCC-------CCCCCccceeEEEEEEeccccceEEEEEEcCCCc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEKND-------TPKPTLALEYIYARKSGKTVMKDICHLWELGSGT   94 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~~~-------~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~   94 (890)
                      -.=|.++|+.++|||+|+|+|++...       ....|.|+-.  +........+..+-++||.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~--~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWM--WCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEE--EEEECSSSTTCEEEEEEECCBC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEE--EEeeccCCCCceEEEEeccccc
Confidence            44588999999999999999998532       1224556432  2222222233478899999964

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.87  E-value=0.62  Score=45.31  Aligned_cols=25  Identities=16%  Similarity=0.081  Sum_probs=21.3

Q ss_pred             CceeEeccCChhhHHHHHHHHhhhh
Q psy11649        543 ASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       543 AsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      +..|.+|++.+.+++.|..+|...+
T Consensus       192 ~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         192 VSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999887643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=91.84  E-value=0.12  Score=49.91  Aligned_cols=106  Identities=14%  Similarity=0.091  Sum_probs=72.6

Q ss_pred             eEEEEeCCCcccccccccccccccccccceEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhhhhHHhhcccccccccccc
Q psy11649        393 CHLWELGSGTSRLEVASLFSSFSLTAQSGFTLVLMLDLSRLNSLWTEAETFLAKFRAIFESNESVREKRGSFEHFRTADE  472 (890)
Q Consensus       393 ~~vW~L~G~~~~~~Ll~~~~al~~~~~~~~~viivlDlS~Pw~l~~sL~~W~~~~r~~i~~~~~~~~~~~~~~~~~~~~~  472 (890)
                      .++.+--|   |.+|++.  .++.-...| .+|+|+|=+..+.         .|.++|+.-                   
T Consensus        68 ~~~iDtPG---h~~f~~~--~~~~~~~aD-~allVVda~~G~~---------~QT~~~~~~-------------------  113 (196)
T d1d2ea3          68 YAHTDCPG---HADYVKN--MITGTAPLD-GCILVVAANDGPM---------PQTREHLLL-------------------  113 (196)
T ss_dssp             EEEEECSS---HHHHHHH--HHHTSSCCS-EEEEEEETTTCSC---------HHHHHHHHH-------------------
T ss_pred             EEeecCcc---hHHHHHH--HHHHHhhcC-eEEEEEEcCCCCc---------hhHHHHHHH-------------------
Confidence            34555444   5777776  344344333 6888899998764         356666653                   


Q ss_pred             cccccccccCCCcchhcCCCcCCcccccccccCCC-cEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-----Ccee
Q psy11649        473 HRDKGLIRTFPVPLILIGGKYDLFEDKGLIRTFPV-PLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-----ASLL  546 (890)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~nlgi-PivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-----AsL~  546 (890)
                            +.                       -+|+ |+||+.+|.|+..  +++.++.|...+|.++..+|     ++.+
T Consensus       114 ------a~-----------------------~~~~~~iIv~iNK~D~~~--~~~~~~~i~~~i~~~l~~~~~~~~~~pii  162 (196)
T d1d2ea3         114 ------AR-----------------------QIGVEHVVVYVNKADAVQ--DSEMVELVELEIRELLTEFGYKGEETPII  162 (196)
T ss_dssp             ------HH-----------------------HTTCCCEEEEEECGGGCS--CHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred             ------HH-----------------------HhcCCcEEEEEecccccc--cHHHHHHHHHHHHHHHHHhCCCcccCEEE
Confidence                  11                       1244 6888999999974  56778999999999998887     4589


Q ss_pred             EeccCCh----------hhHHHHHHHH
Q psy11649        547 FHSSLDP----------GLVKRTRDIL  563 (890)
Q Consensus       547 ftS~K~~----------~n~~~l~kyi  563 (890)
                      +.|++.+          .|+..|..-|
T Consensus       163 ~iSa~~g~~~~~~~~~~~~~~~Lldai  189 (196)
T d1d2ea3         163 VGSALCALEQRDPELGLKSVQKLLDAV  189 (196)
T ss_dssp             ECCHHHHHTTCCTTTTHHHHHHHHHHH
T ss_pred             EEEccccccccCcccccCCHHHHHHHH
Confidence            9999887          3666655544

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.64  E-value=0.12  Score=49.14  Aligned_cols=59  Identities=12%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             CCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcC---CceeEeccCChhhHHHHHHHHhhhh
Q psy11649        506 PVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG---ASLLFHSSLDPGLVKRTRDILNHYA  567 (890)
Q Consensus       506 giP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG---AsL~ftS~K~~~n~~~l~kyi~hr~  567 (890)
                      |+| +|||.+|.|+.   ++++.......++.+-..++   ++.|..|++.+.|++.|.+.|..++
T Consensus       131 ~~~~iiv~inK~D~~---d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         131 GQKNIIIAQNKIELV---DKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             TCCCEEEEEECGGGS---CHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cCccceeeeecccch---hhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            344 78899999987   34444444455666655554   5689999999999999999887653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.62  E-value=0.074  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .-|+|.|+||||||||...+.+
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999999987

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.55  E-value=0.044  Score=50.70  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=18.1

Q ss_pred             EE-EEEcCCCCCHHHHHHHHHc
Q psy11649         37 TL-LLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kI-vLVGd~nvGKSSLInrL~~   57 (890)
                      || +|.|.+||||||+++.|..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45 5679999999999999976

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.48  E-value=0.047  Score=50.21  Aligned_cols=22  Identities=18%  Similarity=0.354  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +=|+|.|.+||||||++++|..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999999875

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.07  E-value=0.049  Score=51.83  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~   58 (890)
                      |+|+|++|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999763

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.21  Score=45.93  Aligned_cols=58  Identities=21%  Similarity=0.134  Sum_probs=44.9

Q ss_pred             CcEEEEEeccccccCCChhHHHHHHHHHHHHHHHcC-CceeEeccCChhhHHHHHHHHhhhhcC
Q psy11649        507 VPLILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNG-ASLLFHSSLDPGLVKRTRDILNHYAFS  569 (890)
Q Consensus       507 iPivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yG-AsL~ftS~K~~~n~~~l~kyi~hr~fg  569 (890)
                      .|+++|.+|.|...+     ...+...+..++..++ ..+|++|+|++.|++.|++.|.-.+.-
T Consensus       114 ~~~i~v~~k~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe  172 (179)
T d1egaa1         114 APVILAVNKVDNVQE-----KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  172 (179)
T ss_dssp             SCEEEEEESTTTCCC-----HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             Cceeeeeeeeeccch-----hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCCC
Confidence            578999999998753     2234445556666777 579999999999999999999887643

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.94  E-value=0.058  Score=49.44  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      =|+|.|.+||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3789999999999999998763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.85  E-value=0.053  Score=52.93  Aligned_cols=21  Identities=24%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~   58 (890)
                      |+|+|++|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999863

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.84  E-value=0.053  Score=49.64  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      =++|+|.+||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367799999999999999986

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.1  Score=50.68  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      ++++||+||||||+++..|..+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            5899999999999999998863

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.73  E-value=0.14  Score=50.57  Aligned_cols=51  Identities=14%  Similarity=0.042  Sum_probs=42.3

Q ss_pred             CCCc-EEEEEeccccccCCChhHHHHHHHHHHHHHHHcCC-----ceeEeccCChhhH
Q psy11649        505 FPVP-LILIGGKYDLFENLEPNKKRIAVQCLRYLAHVNGA-----SLLFHSSLDPGLV  556 (890)
Q Consensus       505 lgiP-ivVV~TK~D~~~~~~~E~~d~Iq~~lR~fcl~yGA-----sL~ftS~K~~~n~  556 (890)
                      +||| |||+++|.|+. +++++..+.+++.++.|+..+|.     +.+.+|++.+.|+
T Consensus       140 ~gv~~iiv~vNK~D~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni  196 (222)
T d1zunb3         140 LGIKHIVVAINKMDLN-GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNV  196 (222)
T ss_dssp             TTCCEEEEEEECTTTT-TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTT
T ss_pred             cCCCEEEEEEEccccc-cccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccC
Confidence            4677 78999999987 77889999999999999998876     3466788777766

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.72  E-value=0.076  Score=48.40  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -+-|.|+|.+||||||+...|..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999999988875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.65  E-value=0.056  Score=50.95  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      =|+|+|++|||||||+++|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999863

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=90.61  E-value=0.053  Score=50.36  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +|+|+|.+||||||+-..|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999876

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.34  E-value=0.15  Score=47.34  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .+=|.|-|.+|||||||.++|..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45588999999999999999976

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.32  E-value=0.052  Score=50.31  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +|+|+|.+||||||+-..|..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.073  Score=50.27  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.|+|+|.|||||||+..+|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999986

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.10  E-value=0.066  Score=52.09  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -++|+|+.|||||||++.+++
T Consensus        29 i~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            478999999999999999988

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.069  Score=53.63  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -+|+|+|.+|||||||++.+.+
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999999988

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.13  Score=52.36  Aligned_cols=22  Identities=27%  Similarity=0.438  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      ++++||+||||||+++..|..+
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999998873

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=89.84  E-value=0.094  Score=52.57  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -.++|+|..|||||||++.+++-
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999873

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.69  E-value=0.074  Score=50.45  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..-|+|+|.|||||||+..+|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999999987

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.63  E-value=0.078  Score=53.55  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -+++|+|.+|||||||++.+++
T Consensus        42 e~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            3699999999999999999987

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.082  Score=50.21  Aligned_cols=21  Identities=29%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -|+|+|++|||||||+++|+.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999986

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.51  E-value=0.096  Score=47.65  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHcC
Q psy11649         38 LLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~~   58 (890)
                      |+|.|.+||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            666699999999999999873

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=89.48  E-value=0.12  Score=50.52  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|.|+||+||||+.+.+++
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999886

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.42  E-value=0.081  Score=50.50  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~   57 (890)
                      |+|+|++|||||||.++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.086  Score=52.67  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=27.6

Q ss_pred             ccCC-CCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        185 YDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       185 ~Dl~-~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      .|.. ..+|+..+..+...++++.++.|..++.+|-.
T Consensus       154 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd  190 (232)
T d2awna2         154 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD  190 (232)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3543 34677778888888999999999999988743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=89.32  E-value=0.18  Score=52.59  Aligned_cols=82  Identities=10%  Similarity=0.104  Sum_probs=43.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcCCCCCCCCccceeEEEEEEeccccceEEEEEEcCCCcchhhHHhhh-hccccccccCc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEKNDTPKPTLALEYIYARKSGKTVMKDICHLWELGSGTSRLEVASLF-SSFSLTAQSGF  114 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~~~~~kptigvdY~f~~~~g~~~~k~~l~IwDlpG~~~~~~Li~~~-r~~~~~~~~ad  114 (890)
                      .+|+|.|..|||||||++.|++.......-+.++-.   ..........+.-+...+...+..++... |.      ++|
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~---~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~------~pd  237 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT---EEIVFKHHKNYTQLFFGGNITSADCLKSCLRM------RPD  237 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS---CCCCCSSCSSEEEEECBTTBCHHHHHHHHTTS------CCS
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccccceeeccch---hhhhcccccccceeccccchhHHHHHHHHhcc------CCC
Confidence            359999999999999999999842211111111100   00011111122333445556677777666 42      255


Q ss_pred             EEEEEEeCCCcCc
Q psy11649        115 TLVLMLDLSRLNS  127 (890)
Q Consensus       115 ~IIIV~DlSnp~S  127 (890)
                      . |+|=.+..++.
T Consensus       238 ~-iivgEiR~~ea  249 (323)
T d1g6oa_         238 R-IILGELRSSEA  249 (323)
T ss_dssp             E-EEESCCCSTHH
T ss_pred             c-ccCCccCchhH
Confidence            5 44455655544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.23  E-value=0.082  Score=52.72  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=27.6

Q ss_pred             ccCC-CCCCcchhhhhHHHHHHHHHHcCCeEEEEec
Q psy11649        185 YDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSS  219 (890)
Q Consensus       185 ~Dl~-~d~d~e~r~~i~~~lr~la~~~Ga~l~etSA  219 (890)
                      .|.. ..+|+..+..+.+.++++++++|+.++.+|-
T Consensus       169 lDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH  204 (230)
T d1l2ta_         169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH  204 (230)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             ecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECC
Confidence            3543 3467778888888999999999999888874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.16  E-value=0.089  Score=53.06  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -.++|+|..|||||||++.+++-
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcc
Confidence            36899999999999999999873

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.16  E-value=0.086  Score=50.05  Aligned_cols=22  Identities=18%  Similarity=0.463  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .-|+|+|.|||||||+..+|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999987

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.85  E-value=0.1  Score=53.54  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -.++|+|..|||||||++.+++-
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            35899999999999999999983

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.81  E-value=0.1  Score=52.44  Aligned_cols=31  Identities=13%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      .+|+..+..+.+.+++++++.|..++.+|-.
T Consensus       156 ~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd  186 (240)
T d2onka1         156 AVDLKTKGVLMEELRFVQREFDVPILHVTHD  186 (240)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            4677788888999999999999998887743

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.083  Score=49.28  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..-|+|+|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999975

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.54  E-value=0.11  Score=52.19  Aligned_cols=36  Identities=11%  Similarity=0.074  Sum_probs=28.3

Q ss_pred             ccCC-CCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        185 YDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       185 ~Dl~-~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      .|.. ..+|+..+..+.+.+++++++.|+.++.+|-.
T Consensus       160 lDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd  196 (239)
T d1v43a3         160 MDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD  196 (239)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence            3543 34677788889999999999999999988743

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=88.27  E-value=0.1  Score=50.79  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|.|+||+||||+.+.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            489999999999999999886

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.97  E-value=0.12  Score=50.47  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -|+|.|.+|+|||||+.+++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            588999999999999999876

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=87.85  E-value=0.12  Score=47.91  Aligned_cols=21  Identities=14%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .|+|+|.+||||||+-+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.52  E-value=0.22  Score=49.66  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|+|.|+||||||+|.+.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999999986

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=0.099  Score=51.98  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -++|+|+.|+|||||++.+++-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4899999999999999999983

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=87.37  E-value=0.13  Score=51.66  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=28.5

Q ss_pred             ccCC-CCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        185 YDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       185 ~Dl~-~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      +|.. ..+|+..+..+.+.++++.++.|..++.+|-.
T Consensus       164 lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd  200 (240)
T d3dhwc1         164 CDEATSALDPATTRSILELLKDINRRLGLTILLITHE  200 (240)
T ss_dssp             EESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred             eccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC
Confidence            3543 34677788889999999999999999998854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.31  E-value=0.15  Score=48.78  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.+.|+|-|+|||||||+..+|..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456788889999999999999987

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.28  E-value=0.17  Score=49.42  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...++|.|+||+||||++..+++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999987

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=87.22  E-value=0.1  Score=52.00  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=26.8

Q ss_pred             cCC-CCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        186 DLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       186 Dl~-~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      |.. ..+|+..+..+.+.++.+.++.|..++.+|-.
T Consensus       152 DEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd  187 (229)
T d3d31a2         152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD  187 (229)
T ss_dssp             ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            543 34677778888888999999999998887743

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.20  E-value=0.17  Score=49.17  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..++|.|++|+|||++++.+..
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999886

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=87.07  E-value=0.14  Score=51.19  Aligned_cols=36  Identities=17%  Similarity=0.137  Sum_probs=28.2

Q ss_pred             ccCC-CCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        185 YDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       185 ~Dl~-~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      .|.. ..+|+..+..+.+.++++.+++|..++.+|-.
T Consensus       163 lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd  199 (240)
T d1g2912         163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD  199 (240)
T ss_dssp             EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             ecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCC
Confidence            3543 34677788888999999999999999998854

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=86.85  E-value=0.14  Score=51.16  Aligned_cols=30  Identities=13%  Similarity=0.238  Sum_probs=23.1

Q ss_pred             CCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        190 NLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       190 d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      .+|+..+..+.+.+++++.+ |..++.+|-.
T Consensus       169 gLD~~~~~~i~~~i~~l~~~-g~til~~tH~  198 (240)
T d1ji0a_         169 GLAPILVSEVFEVIQKINQE-GTTILLVEQN  198 (240)
T ss_dssp             TCCHHHHHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence            46777888888889988766 8888887743

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=86.84  E-value=0.14  Score=51.06  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -+.|+|+.|+|||||++.+++-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999984

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.60  E-value=0.1  Score=52.85  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -+++|+|..|||||||++.+.+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            4799999999999999998877

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.67  E-value=0.15  Score=49.99  Aligned_cols=20  Identities=30%  Similarity=0.300  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~   57 (890)
                      ++|.|+||+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            44569999999999999986

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.51  E-value=0.18  Score=50.73  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHHcC
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      -+.|+|+.|+|||||++.+++-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            3799999999999999999984

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=85.39  E-value=0.31  Score=52.01  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~   57 (890)
                      +++||+||||||+|+..|..
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            69999999999999987765

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.31  E-value=0.2  Score=47.04  Aligned_cols=24  Identities=33%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             cceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         34 QERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        34 ~e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +.+-|+|-|..||||||+++.|..
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999876

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.30  E-value=0.19  Score=50.76  Aligned_cols=21  Identities=29%  Similarity=0.352  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -+.|+|..|||||||++.+.+
T Consensus        30 i~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHc
Confidence            489999999999999999987

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=85.03  E-value=0.19  Score=51.66  Aligned_cols=22  Identities=32%  Similarity=0.682  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|+|+|+||||||.|.+++.+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4589999999999999999987

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.74  E-value=0.21  Score=48.30  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|.|++|+||||++..+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999876

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.34  E-value=0.14  Score=51.46  Aligned_cols=36  Identities=22%  Similarity=0.167  Sum_probs=28.1

Q ss_pred             ccCC-CCCCcchhhhhHHHHHHHHHHcCCeEEEEecc
Q psy11649        185 YDLF-ENLEPNKKRIAVQCLRYLAHVNGASLLFHSSL  220 (890)
Q Consensus       185 ~Dl~-~d~d~e~r~~i~~~lr~la~~~Ga~l~etSAK  220 (890)
                      +|.. ..+|+..+..+...++++.++.|+.++.+|-.
T Consensus       164 lDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd  200 (242)
T d1oxxk2         164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD  200 (242)
T ss_dssp             EESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred             ecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECC
Confidence            3543 34677788888899999999999999888743

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.37  E-value=0.29  Score=45.13  Aligned_cols=24  Identities=13%  Similarity=0.195  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHcC
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLEK   58 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~~   58 (890)
                      ..=++|.|+||+|||+|..+|+.+
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHH
Confidence            345899999999999999999863

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=83.35  E-value=0.32  Score=48.51  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..|++.|+||||||+|++.+.+
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            4699999999999999999987

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.07  E-value=0.34  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...|++.|+||||||+|++.+..
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHH
Confidence            45699999999999999999987

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.83  E-value=0.28  Score=47.19  Aligned_cols=21  Identities=19%  Similarity=0.512  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|.|++|+||||++..++.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            389999999999999999886

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=82.53  E-value=0.34  Score=48.65  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ...+++.|+||||||++++.+..
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            45699999999999999999986

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.42  E-value=0.3  Score=46.10  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      -|+|-|..||||||++..|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998875

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=0.31  Score=46.13  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHc
Q psy11649         38 LLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        38 IvLVGd~nvGKSSLInrL~~   57 (890)
                      |+|.|+|||||||+...|.+
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999999999987

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.12  E-value=0.26  Score=47.88  Aligned_cols=21  Identities=43%  Similarity=0.630  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|.|++|+||||++..++.
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998876

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.94  E-value=0.32  Score=46.40  Aligned_cols=22  Identities=18%  Similarity=0.301  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHHc
Q psy11649         36 RTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        36 ~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      +=|.|-|.+|||||||.++|..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999999876

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.61  E-value=0.33  Score=46.74  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999998875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=81.59  E-value=0.47  Score=46.46  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHHc
Q psy11649         35 ERTLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        35 e~kIvLVGd~nvGKSSLInrL~~   57 (890)
                      ..-|+++|.+||||||.+.+|..
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999988875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.56  E-value=0.33  Score=46.65  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHHc
Q psy11649         37 TLLLIGTKSVGKSTLVFRFLE   57 (890)
Q Consensus        37 kIvLVGd~nvGKSSLInrL~~   57 (890)
                      .++|.|++|+||||++..++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            389999999999999999986