Psyllid ID: psy1173

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MTHLLKKVLRKQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPKPN
ccccccEEEEEccccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEcEEEcccccccEEEEEcccEEEEEEccccEEEEEcccccccccccccccEEccEEEccccccEEEEcccccEEEEcccccEEEEcccccccccccccccccEEEEEEEccccccEEEEcccccEEEEEccccEEEEEccccccccccccccccccccccccccccEEEccccccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEccEEEEcccccccEEEEEEEccccEEEEEccccc
ccccccccccHHHHcccccEEEEEEcccEEEEEcccEEEEEEEEcccccccccccccEEEEEEEccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccHHHccEEccccccEEEEEEcccEEEEEEccccEEEEEcEEccccEEEcccccccccEEEccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccHHHccHHHcccHHHHcccEEEEEEEcccEEEEEcccEEEEEccccccccccccccccccccccccccEEHHHcccccEEEEEEcccEEEEEEccccEEEEEccHHHccccccccccEEEEEEcccccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccEEccccEEEEEccHHHccccccccccEEEEEEcccccccEEEEEEEEccEEEEEEccccEEEEEccccccccccccccEEEEEEccccccccEEEEEEEEcccEEEEEEEEccc
MTHLLKKVLRKqaenpsqkvfvtseavptlkcktgggvvltcgqgdtgqlglgpdvmerKTFALVEDLDNVVEVVVGGMHTVcltedgkvytwgcndegalgreaegdsefipqtvnlpkkavqisagdshsvalledgtvyawgsfrdshgsmglkgegiqktplkleSVSGIVKIASGADHFVMLTSrgnlltagcpeqgqlgritqrsasrnarrgmsflepgevplkrkhiddvFTGVYNTFISSKGSILAFGlnnysqlgeadsevqksgntcfftphlikslsdkkftmlasgqhhslalnsegkiyafgrhdygrlglknvsepvteptpipslqdktitsiacgncvsfaidsegvlygwgmgngyqlgngkeddilnsegkiyafgrhdygrlglknvsepvteptpipslqdktitsiacgncvsfaidsegvlygwgmgngyqlgngkeddilepmkiegkqlnnyTVLQVasggqhsvilakpkpn
MTHLLKKVlrkqaenpsqkvfvtseavptlkcKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVcltedgkvytWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLtagcpeqgqlgritqrsasrnarrgmsflepgevplkrKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVasggqhsvilakpkpn
MTHLLKKVLRKQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFAlvedldnvvevvvggMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPKPN
*******************VFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALG********FIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCP****************************VPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEA***VQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVS***********LQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVS***********LQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGG************
*****KK************VFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNA*R**SFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPK**
MTHLLKKVLRKQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPKPN
***LLKKVLRKQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADS*VQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPK**
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MTHLLKKVLRKQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREAEGDSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPKPN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query498 2.2.26 [Sep-21-2011]
P25183424 Regulator of chromosome c N/A N/A 0.748 0.879 0.458 3e-87
P23800421 Regulator of chromosome c N/A N/A 0.684 0.809 0.478 2e-83
Q8VE37421 Regulator of chromosome c yes N/A 0.676 0.800 0.477 5e-83
P18754421 Regulator of chromosome c yes N/A 0.676 0.800 0.480 5e-83
P25171547 Regulator of chromosome c yes N/A 0.694 0.632 0.463 3e-78
P28745539 Protein pim1 OS=Schizosac yes N/A 0.666 0.615 0.315 3e-40
P21827482 Guanine nucleotide exchan yes N/A 0.670 0.692 0.304 4e-37
P52499464 Protein RCC1 OS=Candida a N/A N/A 0.690 0.741 0.287 7e-34
Q9FN03440 Ultraviolet-B receptor UV yes N/A 0.678 0.768 0.290 9e-34
Q18211569 Regulator of chromosome c yes N/A 0.692 0.606 0.317 3e-33
>sp|P25183|RCC1_XENLA Regulator of chromosome condensation OS=Xenopus laevis GN=rcc1 PE=2 SV=1 Back     alignment and function desciption
 Score =  323 bits (827), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/399 (45%), Positives = 256/399 (64%), Gaps = 26/399 (6%)

Query: 5   LKKVLRKQAENPSQKVFVTSEAVPTLKCK---TGGGVVLTCGQGDTGQLGLGPDVMERKT 61
           LK+ +  +  N +  V  T +A+P +      T GG VLT GQGD GQLGLG D+MERK 
Sbjct: 7   LKRTIAAEESNGTSDVKKT-KALPIVTHPSHGTVGGQVLTLGQGDVGQLGLGEDIMERKK 65

Query: 62  FALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGRE-AEGDSEFIPQTVNLPK 120
            ALV   +++V+   GGMHTVCL   G +YT+GCNDEGALGR+ +E  SE  P  V L +
Sbjct: 66  PALVTLTEDIVQAAAGGMHTVCLGASGSIYTFGCNDEGALGRDTSEEGSEMQPGKVELAE 125

Query: 121 KAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKT--PLKLESVSGIVKIA 178
           K VQ+SAGDSH+ AL EDG V+ +GSFRD++G +GL  E ++K+  P++++  + ++KIA
Sbjct: 126 KVVQVSAGDSHTAALTEDGRVFVFGSFRDNNGVIGLL-EPMKKSMVPVQVQINTPVIKIA 184

Query: 179 SGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMS-FLEPGEVPLK-----R 232
           SG DH V+LT  G+L T+GC EQGQLGR+ +R  +R  R+G+   L P  + LK     R
Sbjct: 185 SGNDHLVLLTVDGDLYTSGCGEQGQLGRVPERFTNRGGRKGLERLLVPQCIHLKAKGSGR 244

Query: 233 KHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSL--S 289
            H  DVF G Y TF +S +G +  FGL+NY QLG  +++       C + P  + S   S
Sbjct: 245 VHFQDVFCGAYFTFAVSQEGHVYGFGLSNYHQLGTKNTQA------C-YAPQNLTSFKNS 297

Query: 290 DKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSI 349
            K +   + GQHH++ ++SEGK Y+ GR +YGRLGL   +E  +EPTPIP L    I S+
Sbjct: 298 TKSWIGFSGGQHHTVCVDSEGKAYSLGRAEYGRLGLGENAEEQSEPTPIPDL--PKINSV 355

Query: 350 ACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSE 388
           A G  VS+A+ ++G ++ WGMG   QLG G+E+D+ + E
Sbjct: 356 ASGASVSYAVSTDGCVFAWGMGTNLQLGTGEEEDVWSPE 394
Promotes the exchange of Ran-bound GDP by GTP. Involved in the regulation of onset of chromosome condensation in the S phase. Binds to the chromatin. RCC1/Ran complex (together with other proteins) acts as a component of a signal transmission pathway that detects unreplicated DNA.
Xenopus laevis (taxid: 8355)
>sp|P23800|RCC1_MESAU Regulator of chromosome condensation OS=Mesocricetus auratus GN=RCC1 PE=1 SV=1 Back     alignment and function description
>sp|Q8VE37|RCC1_MOUSE Regulator of chromosome condensation OS=Mus musculus GN=Rcc1 PE=1 SV=1 Back     alignment and function description
>sp|P18754|RCC1_HUMAN Regulator of chromosome condensation OS=Homo sapiens GN=RCC1 PE=1 SV=1 Back     alignment and function description
>sp|P25171|RCC1_DROME Regulator of chromosome condensation OS=Drosophila melanogaster GN=Bj1 PE=1 SV=2 Back     alignment and function description
>sp|P28745|RCC1_SCHPO Protein pim1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pim1 PE=1 SV=2 Back     alignment and function description
>sp|P21827|RCC1_YEAST Guanine nucleotide exchange factor SRM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRM1 PE=1 SV=1 Back     alignment and function description
>sp|P52499|RCC1_CANAX Protein RCC1 OS=Candida albicans GN=RCC1 PE=3 SV=1 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q18211|RCC1_CAEEL Regulator of chromosome condensation OS=Caenorhabditis elegans GN=ran-3 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
189235771422 PREDICTED: similar to regulator of chrom 0.682 0.805 0.516 9e-98
345492280423 PREDICTED: regulator of chromosome conde 0.736 0.867 0.472 2e-95
340709117471 PREDICTED: LOW QUALITY PROTEIN: regulato 0.702 0.743 0.494 4e-90
157116974519 regulator of chromosome condensation [Ae 0.753 0.722 0.467 5e-90
170053955473 regulator of chromosome condensation [Cu 0.759 0.799 0.464 9e-90
350419275468 PREDICTED: LOW QUALITY PROTEIN: regulato 0.702 0.747 0.491 3e-89
321478568404 hypothetical protein DAPPUDRAFT_206077 [ 0.684 0.844 0.485 6e-89
380022175431 PREDICTED: regulator of chromosome conde 0.702 0.812 0.483 1e-88
327315378431 regulator of chromosome condensation [Ap 0.702 0.812 0.480 1e-88
328792337472 PREDICTED: regulator of chromosome conde 0.702 0.741 0.480 1e-88
>gi|189235771|ref|XP_970173.2| PREDICTED: similar to regulator of chromosome condensation [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 184/356 (51%), Positives = 240/356 (67%), Gaps = 16/356 (4%)

Query: 37  GVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCN 96
           GV+L  G GD GQLGLGPDV+E+   ALV+  D +V++  GGMHTVCLT++GK+ ++GCN
Sbjct: 37  GVLLVTGAGDCGQLGLGPDVLEKSRPALVQTSDEIVDICAGGMHTVCLTKEGKILSFGCN 96

Query: 97  DEGALGREAEG--DSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSM 154
           DEGALGR  EG  D+E  P  V LP K +QI+AGDSHS ALL+DG V+AWG+FRDSHG+M
Sbjct: 97  DEGALGRITEGKEDAESTPGEVELPGKVIQITAGDSHSAALLDDGRVFAWGTFRDSHGNM 156

Query: 155 GLKGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASR 214
           GL   G +K P ++     ++KIASGADH V LT+ G + T GCPEQGQLGR ++R +SR
Sbjct: 157 GLTLRGNEKLPYEIIQEVHVIKIASGADHIVFLTNHGEVYTCGCPEQGQLGRTSERGSSR 216

Query: 215 NARRGMSFLEPGEVPLK---RKHIDDVFTGVYNTF--ISSKGSILAFGLNNYSQLGEADS 269
           NAR     L+P  + LK   + H D+++ G Y TF  ++ K  I  FGLNNY+QLG    
Sbjct: 217 NAR--TKLLQPTIISLKPSLKLHFDNIWAGTYCTFAKVAGKSDIYVFGLNNYNQLGLKSL 274

Query: 270 EVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVS 329
             Q       + P L K  S   ++M++S +HH++AL   GK YA GR DYGRLGL    
Sbjct: 275 APQ-------YLPILSKEFSKYNWSMISSAEHHTIALTENGKTYAIGRKDYGRLGLGKDC 327

Query: 330 EPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDIL 385
           E  +E T IP+L+DKT+  +ACG+  SFA+  +G LYGWGMG   QLGNG+E+D  
Sbjct: 328 EDASELTEIPALKDKTVVYVACGSSTSFAVTDKGELYGWGMGTNGQLGNGEEEDCF 383

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345492280|ref|XP_001603331.2| PREDICTED: regulator of chromosome condensation-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340709117|ref|XP_003393160.1| PREDICTED: LOW QUALITY PROTEIN: regulator of chromosome condensation-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|157116974|ref|XP_001652914.1| regulator of chromosome condensation [Aedes aegypti] gi|157116976|ref|XP_001652915.1| regulator of chromosome condensation [Aedes aegypti] gi|108876236|gb|EAT40461.1| AAEL007799-PA [Aedes aegypti] gi|403182896|gb|EJY57703.1| AAEL007799-PB [Aedes aegypti] Back     alignment and taxonomy information
>gi|170053955|ref|XP_001862909.1| regulator of chromosome condensation [Culex quinquefasciatus] gi|167874379|gb|EDS37762.1| regulator of chromosome condensation [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|350419275|ref|XP_003492127.1| PREDICTED: LOW QUALITY PROTEIN: regulator of chromosome condensation-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|321478568|gb|EFX89525.1| hypothetical protein DAPPUDRAFT_206077 [Daphnia pulex] Back     alignment and taxonomy information
>gi|380022175|ref|XP_003694928.1| PREDICTED: regulator of chromosome condensation-like [Apis florea] Back     alignment and taxonomy information
>gi|327315378|ref|NP_001192152.1| regulator of chromosome condensation [Apis mellifera] Back     alignment and taxonomy information
>gi|328792337|ref|XP_003251711.1| PREDICTED: regulator of chromosome condensation [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
ZFIN|ZDB-GENE-040426-2216418 rcc1 "regulator of chromosome 0.736 0.877 0.473 1.9e-83
UNIPROTKB|A7Z018422 RCC1 "Uncharacterized protein" 0.682 0.805 0.473 6.2e-78
UNIPROTKB|P18754421 RCC1 "Regulator of chromosome 0.682 0.807 0.465 1.1e-76
RGD|1592835421 Rcc1 "regulator of chromosome 0.682 0.807 0.465 1.1e-76
UNIPROTKB|I3LT85421 RCC1 "Uncharacterized protein" 0.682 0.807 0.468 1.5e-76
UNIPROTKB|P23800421 RCC1 "Regulator of chromosome 0.684 0.809 0.461 3.9e-76
MGI|MGI:1913989421 Rcc1 "regulator of chromosome 0.682 0.807 0.460 6.3e-76
FB|FBgn0002638547 Rcc1 "Regulator of chromosome 0.694 0.632 0.45 4.1e-72
UNIPROTKB|C9JW69372 RCC1 "Regulator of chromosome 0.620 0.830 0.469 1.5e-67
UNIPROTKB|C9JQZ4283 RCC1 "Regulator of chromosome 0.471 0.830 0.502 2.6e-54
ZFIN|ZDB-GENE-040426-2216 rcc1 "regulator of chromosome condensation 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 184/389 (47%), Positives = 239/389 (61%)

Query:     6 KKVLRKQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFAXX 65
             KK +++Q   PS         V  +      G+VL  GQGD GQLGLG DVMERK  A  
Sbjct:     4 KKAVKRQTAAPSDSTVAKKLKVSHISHGQEKGLVLVLGQGDVGQLGLGEDVMERKKPALV 63

Query:    66 XXXXXXXXXXXXXMHTVCLTEDGKVYTWGCNDEGALGRE-AEGDSEFIPQTVNLPKKAVQ 124
                          MHTVCL++ G VYT+GCNDEGALGR+ +E  SE +P  V+L +K +Q
Sbjct:    64 TLPEGIVQAVAGGMHTVCLSDTGNVYTFGCNDEGALGRDTSEEGSETVPAKVDLGEKIIQ 123

Query:   125 ISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQK--TPLKLESVSGIVKIASGAD 182
             +SAGDSHS AL EDG VY WGSFRD++G +GL  E ++K   P+K+     +VKI SG D
Sbjct:   124 VSAGDSHSAALTEDGGVYVWGSFRDNNGVIGLL-EPMKKCTVPVKVPIDKPVVKIVSGND 182

Query:   183 HFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRG-MSFLEPGEVPLKRKH---IDDV 238
             H VMLT+ G L T+GC EQGQLGR+ +  A+R  R+G M  LEP  V +K +      DV
Sbjct:   183 HLVMLTAHGELYTSGCGEQGQLGRVAEHFANRGGRKGLMRLLEPQMVIIKPRGKVVFTDV 242

Query:   239 FTGVYNTF-ISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSL--SDKKFTM 295
             F G Y TF +S +G +  FGL+NY QLG       +S NTCF  P  + S   S   +  
Sbjct:   243 FCGAYFTFAVSKEGHVYGFGLSNYHQLGT------QSTNTCF-VPVKLSSFKNSTTSWVG 295

Query:   296 LASGQHHSLALNSEGKIYAFGRHDYGRLGL-KNVSEPVTEPTPIPSLQDKTITSIACGNC 354
              + GQHH+L LNSEGK Y+ GR +YGRLGL K+V E  +EPT +P + D  +  +ACG  
Sbjct:   296 FSGGQHHTLCLNSEGKAYSLGRAEYGRLGLGKDVGEK-SEPTVVPGISDVQV--VACGAS 352

Query:   355 VSFAIDSEGVLYGWGMGNGYQLGNGKEDD 383
             VS+A+  +G ++ WGMG   QLG G+E+D
Sbjct:   353 VSYAVTKQGSVFSWGMGTNLQLGTGEEED 381
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|A7Z018 RCC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P18754 RCC1 "Regulator of chromosome condensation" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1592835 Rcc1 "regulator of chromosome condensation 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LT85 RCC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P23800 RCC1 "Regulator of chromosome condensation" [Mesocricetus auratus (taxid:10036)] Back     alignment and assigned GO terms
MGI|MGI:1913989 Rcc1 "regulator of chromosome condensation 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0002638 Rcc1 "Regulator of chromosome condensation 1 ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|C9JW69 RCC1 "Regulator of chromosome condensation" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JQZ4 RCC1 "Regulator of chromosome condensation" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VE37RCC1_MOUSENo assigned EC number0.47770.67670.8004yesN/A
Q18211RCC1_CAEELNo assigned EC number0.31770.69270.6063yesN/A
P25171RCC1_DROMENo assigned EC number0.46380.69470.6325yesN/A
P21827RCC1_YEASTNo assigned EC number0.30400.67060.6929yesN/A
P18754RCC1_HUMANNo assigned EC number0.48050.67670.8004yesN/A
P28745RCC1_SCHPONo assigned EC number0.31570.66660.6159yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-57
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-17
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-13
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 9e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-09
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.003
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  196 bits (501), Expect = 3e-57
 Identities = 110/375 (29%), Positives = 169/375 (45%), Gaps = 51/375 (13%)

Query: 43  GQGDTGQLGLGPDVM-----ERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCND 97
           G     +LGLG D       +   F    D  +++++  GG H++ L  DG +Y+WG ND
Sbjct: 74  GSNGMNELGLGNDETKVDRPQLNPF-GRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132

Query: 98  EGALGREAEGDSEFI---------------PQTVNL------PKKAVQISAGDSHSVALL 136
           +GALGR+   D                   P  V          + V+++ G   SV L 
Sbjct: 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILT 192

Query: 137 EDGTVYAWGSFRDSHGSMGL----KGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGN 192
            DG VY+WG+FR      G     +   IQ TPLK+     IV++A+GADH + LT+ G 
Sbjct: 193 ADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPK-KAIVQLAAGADHLIALTNEGK 251

Query: 193 LLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVP--LKRKHIDDVFTGVYNTF-ISS 249
           +   G  ++GQLGR T                   V      ++I  V  G  ++  +  
Sbjct: 252 VYGWGSNQKGQLGRPTSE----------RLKLVVLVGDPFAIRNIKYVACGKDHSLALDE 301

Query: 250 KGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSE 309
            G I A+G+N + QLG                P+  + LS      +++G+ HSL L  +
Sbjct: 302 DGEIYAWGVNIFGQLGAGSDG---EIGALTTKPNYKQLLSGVTICSISAGESHSLILRKD 358

Query: 310 GKIYAFGRHDYGRLGL-KNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGW 368
           G +YAFGR D G+LG+ + ++  V+ PT +       +  +ACG   + A   +G +Y W
Sbjct: 359 GTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV--AIKLEQVACGTHHNIARTDDGSVYSW 416

Query: 369 GMGNGYQLGNGKEDD 383
           G G    LGNG ++ 
Sbjct: 417 GWGEHGNLGNGPKEA 431

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 498
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427|consensus443 100.0
KOG1427|consensus443 100.0
KOG0783|consensus 1267 99.96
KOG1428|consensus 3738 99.93
KOG0783|consensus 1267 99.91
KOG1428|consensus 3738 99.9
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.4
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.19
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.19
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.1
KOG0941|consensus 850 99.09
KOG0941|consensus 850 98.76
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 97.48
KOG3669|consensus705 97.12
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.06
KOG0315|consensus311 92.5
KOG3669|consensus 705 90.09
KOG0646|consensus476 88.49
KOG0315|consensus311 85.05
KOG0943|consensus 3015 84.63
KOG0943|consensus 3015 84.38
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 80.38
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.2e-54  Score=398.87  Aligned_cols=377  Identities=32%  Similarity=0.514  Sum_probs=304.1

Q ss_pred             ecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCC----CCcEEEEecCceEEEEecCCcEEEeeCCCCC
Q psy1173          24 SEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDL----DNVVEVVVGGMHTVCLTEDGKVYTWGCNDEG   99 (498)
Q Consensus        24 ~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~----~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~g   99 (498)
                      ..-..|..+...-..||+||+|..+|||++.+......|+..+-.    -.|++++||+.|+++|++||+||+||.|..|
T Consensus        55 q~~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G  134 (476)
T COG5184          55 QIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDG  134 (476)
T ss_pred             hhcccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccc
Confidence            344666778889999999999999999999877667888888654    5799999999999999999999999999999


Q ss_pred             CCCCcC---------------CCCCcccceeeeC------CCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCC
Q psy1173         100 ALGREA---------------EGDSEFIPQTVNL------PKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKG  158 (498)
Q Consensus       100 qlg~~~---------------~~~~~~~p~~~~~------~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~  158 (498)
                      +||+..               ..+....|..++.      +.++++++||++++++|+++|+||.||.++-..+-.|...
T Consensus       135 ~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~  214 (476)
T COG5184         135 ALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYK  214 (476)
T ss_pred             ccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccc
Confidence            999955               3344668888886      6689999999999999999999999999554444444222


Q ss_pred             CCcc----eecEEecccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccc
Q psy1173         159 EGIQ----KTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKH  234 (498)
Q Consensus       159 ~~~~----~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~  234 (498)
                      ....    ..|.+++ ...|+++++|.+|.++|+++|++|.||++.+||||....+.....          .        
T Consensus       215 ~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~----------~--------  275 (476)
T COG5184         215 NSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLV----------V--------  275 (476)
T ss_pred             ccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccc----------c--------
Confidence            2222    3666665 678999999999999999999999999999999998665432110          0        


Q ss_pred             eeeeeeccceEEeccCCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEEecCCcEEE
Q psy1173         235 IDDVFTGVYNTFISSKGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYA  314 (498)
Q Consensus       235 i~~i~~g~~~~~~~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~  314 (498)
                                                                   ..|....   -..|+.|+||.+|++||+++|++|+
T Consensus       276 ---------------------------------------------lv~~~f~---i~~i~~vacG~~h~~al~~~G~i~a  307 (476)
T COG5184         276 ---------------------------------------------LVGDPFA---IRNIKYVACGKDHSLALDEDGEIYA  307 (476)
T ss_pred             ---------------------------------------------ccCChhh---hhhhhhcccCcceEEEEcCCCeEEE
Confidence                                                         1111111   1127889999999999999999999


Q ss_pred             EecCCCCcccccCCCC---CccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcE
Q psy1173         315 FGRHDYGRLGLKNVSE---PVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKI  391 (498)
Q Consensus       315 ~G~n~~gqlg~~~~~~---~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~  391 (498)
                      ||.|.+|||+.+...+   ..+.|.....+.+..|..|++|..|+++|..+|.+|.||.+..+|||..+...        
T Consensus       308 ~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~--------  379 (476)
T COG5184         308 WGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEIT--------  379 (476)
T ss_pred             eccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCcccce--------
Confidence            9999999999873221   12345555566667799999999999999999999999999999998876321        


Q ss_pred             EEecccccccccccCCCCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCC-CceeeeeEec
Q psy1173         392 YAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE-DDILEPMKIE  470 (498)
Q Consensus       392 ~~~G~n~~g~lg~~~~~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~-~~~~~p~~v~  470 (498)
                                       ..+..|.++....+  +.+++||.+|.++.+.+|+||+||.+.+||||+|+. +.+..|+.++
T Consensus       380 -----------------~~~~~~~~ls~~~~--~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~  440 (476)
T COG5184         380 -----------------IDVSTPTKLSVAIK--LEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIR  440 (476)
T ss_pred             -----------------eecCCccccccccc--eEEEEecCccceeeccCCceEEecCchhhhccCCchhhhcccccccc
Confidence                             12245555544444  999999999999999999999999999999999888 7788999999


Q ss_pred             ccccCCceEEEEeeCCceEEEEec
Q psy1173         471 GKQLNNYTVLQVASGGQHSVILAK  494 (498)
Q Consensus       471 ~~~~~~~~~~~v~~G~~~s~~l~~  494 (498)
                      .+.++...++..-||..++++...
T Consensus       441 ~~~~~~~~~i~~g~~~~~~v~~~~  464 (476)
T COG5184         441 QPLLSGHNIILAGYGNQFSVIEET  464 (476)
T ss_pred             ccccCCCceEEeccCcceEEEecc
Confidence            777788999999999998887654

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315|consensus Back     alignment and domain information
>KOG3669|consensus Back     alignment and domain information
>KOG0646|consensus Back     alignment and domain information
>KOG0315|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 9e-80
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-35
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-79
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-35
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-75
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 7e-26
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 5e-34
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 8e-16
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 2e-05
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 8e-31
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 8e-29
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 3e-16
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 9e-31
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-28
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 3e-16
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-30
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 8e-29
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 3e-16
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-30
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 8e-15
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-30
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 7e-28
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 5e-16
1jtd_B273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 6e-07
3qhy_B282 Structural, Thermodynamic And Kinetic Analysis Of T 8e-07
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure 
Iteration: 1

 Score =  294 bits (752), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 167/360 (46%), Positives = 229/360 (63%), Gaps = 23/360 (6%)
Query: 37  GVVLTCGQGDTGQLGLGPDVMERKTFAXXXXXXXXXXXXXXXMHTVCLTEDGKVYTWGCN 96
           G+VLT GQGD GQLGLG +VMERK  A               MHTVCL++ G+VY++GCN
Sbjct: 16  GLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCN 75
Query: 97  DEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMG 155
           DEGALGR+   + SE +P  V L +K VQ+SAGDSH+ AL +DG V+ WGSFRD++G +G
Sbjct: 76  DEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIG 135
Query: 156 LKGEGIQKT--PLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSAS 213
           L  E ++K+  P++++    +VK+ASG DH VMLT+ G+L T GC EQGQLGR+ +  A+
Sbjct: 136 LL-EPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN 194
Query: 214 RNARRGMS-FLEPGEVPLK----RKHI--DDVFTGVYNTF-ISSKGSILAFGLNNYSQLG 265
           R  R+G+   L P  V LK    R H+   D F G Y TF IS +G +  FGL+NY QLG
Sbjct: 195 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLG 254
Query: 266 EADSEVQKSGNTCFFTPHLIKSL--SDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRL 323
              +E      +CF  P  + S   S K +   + GQHH++ ++SEGK Y+ GR +YGRL
Sbjct: 255 TPGTE------SCFI-PQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 307
Query: 324 GLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD 383
           GL   +E  + PT I  L    ++S+ACG  V +A+  +G ++ WGMG  YQLG G+++D
Sbjct: 308 GLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 365
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-123
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-99
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 6e-35
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-118
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-94
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-46
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-35
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-101
3of7_A473 Regulator of chromosome condensation; beta-propell 8e-76
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-54
3of7_A 473 Regulator of chromosome condensation; beta-propell 7e-11
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-96
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-91
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 8e-70
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-08
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-94
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-88
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-75
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-57
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-41
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-38
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-35
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-20
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
 Score =  365 bits (939), Expect = e-123
 Identities = 173/421 (41%), Positives = 245/421 (58%), Gaps = 46/421 (10%)

Query: 34  TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTW 93
           T  G+VLT GQGD GQLGLG +VMERK  ALV   ++VV+   GGMHTVCL++ G+VY++
Sbjct: 24  TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSF 83

Query: 94  GCNDEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHG 152
           GCNDEGALGR+   + SE +P  V L +K VQ+SAGDSH+ AL +DG V+ WGSFRD++G
Sbjct: 84  GCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNG 143

Query: 153 SMGL-KGEGIQKTPLKLESVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRS 211
            +GL +       P++++    +VK+ASG DH VMLT+ G+L T GC EQGQLGR+ +  
Sbjct: 144 VIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELF 203

Query: 212 ASRNARRGM-SFLEPGEVPLKRK------HIDDVFTGVYNTF-ISSKGSILAFGLNNYSQ 263
           A+R  R+G+   L P  V LK +         D F G Y TF IS +G +  FGL+NY Q
Sbjct: 204 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 263

Query: 264 LGEADSEVQKSGNTCFFTPHLIKSLSD--KKFTMLASGQHHSLALNSEGKIYAFGRHDYG 321
           LG   +E         F P  + S  +  K +   + GQHH++ ++SEGK Y+ GR +YG
Sbjct: 264 LGTPGTESC-------FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 316

Query: 322 RLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKE 381
           RLGL   +E  + PT I  L    ++S+ACG  V +A+  +G ++ WGMG  YQLG G++
Sbjct: 317 RLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD 374

Query: 382 DDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSE 441
           +D                          PV        L+++ + S++ G   +  +  +
Sbjct: 375 ED-----------------------AWSPV--EMMGKQLENRVVLSVSSGGQHTVLLVKD 409

Query: 442 G 442
            
Sbjct: 410 K 410
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.18
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.85
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 96.17
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.06
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 95.44
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.28
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.16
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.11
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 94.86
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.17
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 90.41
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 89.94
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 88.48
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 85.68
4g56_B357 MGC81050 protein; protein arginine methyltransfera 84.91
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 84.25
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 83.37
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 82.65
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 82.49
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 80.95
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 80.22
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=2e-73  Score=569.34  Aligned_cols=401  Identities=40%  Similarity=0.653  Sum_probs=341.2

Q ss_pred             hhccCCCcceEEeecCcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcE
Q psy1173          11 KQAENPSQKVFVTSEAVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKV   90 (498)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l   90 (498)
                      ..+..|..++..++++..|+++++++|+||+||.|.+||||.+.+......|.+++.+.+|++|+||..|+++|+++|+|
T Consensus        17 ~~~~~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v   96 (423)
T 3mvd_K           17 AEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDI   96 (423)
T ss_dssp             ------------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCE
T ss_pred             CCCCCccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeE
Confidence            34567778889999999999999999999999999999999997667788999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCcCCCC-CcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceecEEec
Q psy1173          91 YTWGCNDEGALGREAEGD-SEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTPLKLE  169 (498)
Q Consensus        91 ~~wG~n~~gqlg~~~~~~-~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p~~v~  169 (498)
                      |+||.|.+||||.+.... ....|.++..+.+|++|+||.+|+++|+++|+||+||.++|.++|||.........|+++.
T Consensus        97 ~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~  176 (423)
T 3mvd_K           97 YSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLM  176 (423)
T ss_dssp             EEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESS
T ss_pred             EEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEec
Confidence            999999999999976543 4678999988899999999999999999999999999877899999999888888999998


Q ss_pred             ccCCeEEEeccCCeEEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEEecc
Q psy1173         170 SVSGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISS  249 (498)
Q Consensus       170 ~~~~i~~i~~g~~~~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~  249 (498)
                      ...+|++|+||.+|+++|+++|+||+||.|.++|||.+...........                               
T Consensus       177 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~-------------------------------  225 (423)
T 3mvd_K          177 EGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR-------------------------------  225 (423)
T ss_dssp             TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTT-------------------------------
T ss_pred             CCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccc-------------------------------
Confidence            8899999999999999999999999999999999998655332111000                               


Q ss_pred             CCcEEEEeccCCccccccchhccccCCceeecceeecccCCCcEEEEecCcceeEEE-ecCCcEEEEecCCCCcccccCC
Q psy1173         250 KGSILAFGLNNYSQLGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLAL-NSEGKIYAFGRHDYGRLGLKNV  328 (498)
Q Consensus       250 ~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~l-t~~G~v~~~G~n~~gqlg~~~~  328 (498)
                                     +          ......|.++......+|++|+||..|++++ +++|+||+||.|.+||||.+..
T Consensus       226 ---------------~----------~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~  280 (423)
T 3mvd_K          226 ---------------G----------KRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETK  280 (423)
T ss_dssp             ---------------T----------TTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCT
T ss_pred             ---------------c----------cccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCC
Confidence                           0          1111577777777777899999999999999 6999999999999999998543


Q ss_pred             -CCCccCCcccCCCCCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCC
Q psy1173         329 -SEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNV  407 (498)
Q Consensus       329 -~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~  407 (498)
                       ......|.++.   ..+|++|+||.+|+++|+++|+||+||.|.++|||.+....                        
T Consensus       281 ~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~------------------------  333 (423)
T 3mvd_K          281 GKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD------------------------  333 (423)
T ss_dssp             TCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCS------------------------
T ss_pred             CCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccc------------------------
Confidence             33344566555   35799999999999999999999999999999998876432                        


Q ss_pred             CCCCCCCeecCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCCCceeeeeEecccccCCceEEEEeeCCc
Q psy1173         408 SEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQ  487 (498)
Q Consensus       408 ~~~~~~p~~v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~  487 (498)
                        ....|.+++.+.+ +|++|+||.+|+++|+++|+||+||+|.+||||+|+.++...|++|+.+.+.+.+|.+|+||.+
T Consensus       334 --~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~  410 (423)
T 3mvd_K          334 --VVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQ  410 (423)
T ss_dssp             --CEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSS
T ss_pred             --cccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEEEEECCC
Confidence              2256888887776 7999999999999999999999999999999999999999999999976678899999999999


Q ss_pred             eEEEEecCCC
Q psy1173         488 HSVILAKPKP  497 (498)
Q Consensus       488 ~s~~l~~~~~  497 (498)
                      ||++|+++++
T Consensus       411 ht~~l~~~~k  420 (423)
T 3mvd_K          411 HAIFLVKADK  420 (423)
T ss_dssp             EEEEEEECC-
T ss_pred             cEEEEEcccc
Confidence            9999999875
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 498
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-53
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-51
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-17
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-14
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-16
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 7e-11
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.001
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (464), Expect = 2e-53
 Identities = 164/419 (39%), Positives = 232/419 (55%), Gaps = 42/419 (10%)

Query: 34  TGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTW 93
           T  G+VLT GQGD GQLGLG +VMERK  ALV   ++VV+   GGMHTVCL++ G+VY++
Sbjct: 12  TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSF 71

Query: 94  GCNDEGALGREAEGDS-EFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHG 152
           GCNDEGALGR+   +  E +P  V L +K VQ+SAGDSH+ AL +DG V+ WGSFRD++G
Sbjct: 72  GCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNG 131

Query: 153 SMGLKGEGIQKTPLKLESV-SGIVKIASGADHFVMLTSRGNLLTAGCPEQGQLGRITQRS 211
            +GL     +        +   +VK+ASG DH VMLT+ G+L T GC EQGQLGR+ +  
Sbjct: 132 VIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELF 191

Query: 212 ASRNARRGMS-------FLEPGEVPLKRKHIDDVFTGVYNTF-ISSKGSILAFGLNNYSQ 263
           A+R  R+G+         +             D F G Y TF IS +G +  FGL+NY Q
Sbjct: 192 ANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQ 251

Query: 264 LGEADSEVQKSGNTCFFTPHLIKSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRL 323
           LG   +E            +     S K +   + GQHH++ ++SEGK Y+ GR +YGRL
Sbjct: 252 LGTPGTESCFIPQNLTSFKN-----STKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 306

Query: 324 GLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDD 383
           GL   +E  + PT I  L    ++S+ACG  V +A+  +G ++ WGMG  YQLG G+++D
Sbjct: 307 GLGEGAEEKSIPTLISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 364

Query: 384 ILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPIPSLQDKTITSIACGNCVSFAIDSEG 442
                                     PV        L+++ + S++ G   +  +  + 
Sbjct: 365 -----------------------AWSPV--EMMGKQLENRVVLSVSSGGQHTVLLVKDK 398
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.06
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.9
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 90.5
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 89.43
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 84.62
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 80.62
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-64  Score=500.14  Aligned_cols=388  Identities=44%  Similarity=0.750  Sum_probs=320.7

Q ss_pred             CcCcccccccCCeEEEEecCCCCCCCCCCCCccccceeeecCCCCcEEEEecCceEEEEecCCcEEEeeCCCCCCCCCcC
Q psy1173          26 AVPTLKCKTGGGVVLTCGQGDTGQLGLGPDVMERKTFALVEDLDNVVEVVVGGMHTVCLTEDGKVYTWGCNDEGALGREA  105 (498)
Q Consensus        26 ~~~~~~~~~~~g~v~~wG~n~~gqlg~g~~~~~~~~p~~v~~~~~i~~i~~g~~~~~~l~~~g~l~~wG~n~~gqlg~~~  105 (498)
                      ...|+++++.+|+||+||.|.+||||+|.....+..|.+|+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus         4 ~~~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~   83 (401)
T d1a12a_           4 KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT   83 (401)
T ss_dssp             CCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCC
T ss_pred             eeeEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccc
Confidence            35799999999999999999999999997777889999999999999999999999999999999999999999999965


Q ss_pred             CC-CCcccceeeeCCCceeEEeecCCeEEEEEcCCcEEEeCCcCCCCCccCCCCCCcceec-EEecccCCeEEEeccCCe
Q psy1173         106 EG-DSEFIPQTVNLPKKAVQISAGDSHSVALLEDGTVYAWGSFRDSHGSMGLKGEGIQKTP-LKLESVSGIVKIASGADH  183 (498)
Q Consensus       106 ~~-~~~~~p~~~~~~~~i~~i~~g~~~~~~L~~~G~vy~~G~~~~~~g~lG~~~~~~~~~p-~~v~~~~~i~~i~~g~~~  183 (498)
                      .. .....|..+....+|++|+||..|+++++++|+||+||.+.+..++++.........+ .......+|++|++|..|
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~  163 (401)
T d1a12a_          84 SVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDH  163 (401)
T ss_dssp             CSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSE
T ss_pred             ccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccc
Confidence            44 3345677777889999999999999999999999999986666666666555444433 333566789999999999


Q ss_pred             EEEEecCCcEEEEecCCCCccccccccccccccccCcccccCccccccccceeeeeeccceEEeccCCcEEEEeccCCcc
Q psy1173         184 FVMLTSRGNLLTAGCPEQGQLGRITQRSASRNARRGMSFLEPGEVPLKRKHIDDVFTGVYNTFISSKGSILAFGLNNYSQ  263 (498)
Q Consensus       184 ~~~l~~~g~v~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~i~~~~~~i~~i~~g~~~~~~~~~g~v~~~G~n~~gq  263 (498)
                      +++++.+|++|+||.|.++|+|..................                                        
T Consensus       164 ~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~----------------------------------------  203 (401)
T d1a12a_         164 LVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERL----------------------------------------  203 (401)
T ss_dssp             EEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHH----------------------------------------
T ss_pred             eeeeecCCcccccccCCccccCCCCccccccCCccccccc----------------------------------------
Confidence            9999999999999999999999765543322111110000                                        


Q ss_pred             ccccchhccccCCceeecceee-----cccCCCcEEEEecCcceeEEEecCCcEEEEecCCCCcccccCCCCCccCCccc
Q psy1173         264 LGEADSEVQKSGNTCFFTPHLI-----KSLSDKKFTMLASGQHHSLALNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTPI  338 (498)
Q Consensus       264 lg~~~~~~~~~~~~~~~~p~~i-----~~~~~~~i~~i~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i  338 (498)
                                      ..|..+     ......+|.+|+||..|+++|+++|+||.||.|.++++|........ .+..+
T Consensus       204 ----------------~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~-~~~~~  266 (401)
T d1a12a_         204 ----------------LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCF-IPQNL  266 (401)
T ss_dssp             ----------------HSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEE-EEEEC
T ss_pred             ----------------cccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccce-ecccc
Confidence                            111111     12234569999999999999999999999999999999987654433 33333


Q ss_pred             CCC--CCCcEEEEeccCceeEEEeCCCCEEEEeCCCccccCCCCCCcccCCCCcEEEecccccccccccCCCCCCCCCee
Q psy1173         339 PSL--QDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILNSEGKIYAFGRHDYGRLGLKNVSEPVTEPTP  416 (498)
Q Consensus       339 ~~~--~~~~i~~i~~g~~~~~~lt~~G~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~G~n~~g~lg~~~~~~~~~~p~~  416 (498)
                      ..+  ....++.+++|..|+++++++|++|+||.|.++|||.+...                          +....|..
T Consensus       267 ~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~--------------------------~~~~~P~~  320 (401)
T d1a12a_         267 TSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGA--------------------------EEKSIPTL  320 (401)
T ss_dssp             GGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTC--------------------------CCEEEEEE
T ss_pred             ccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCccc--------------------------ccccCCEE
Confidence            322  23679999999999999999999999999999999877532                          22256788


Q ss_pred             cCCCCCCcEEEEEeCCceEEEEeCCCCEEEEeCCCCCCcCCCCCCceeeeeEecccccCCceEEEEeeCCceEEEEecCC
Q psy1173         417 IPSLQDKTITSIACGNCVSFAIDSEGVLYGWGMGNGYQLGNGKEDDILEPMKIEGKQLNNYTVLQVASGGQHSVILAKPK  496 (498)
Q Consensus       417 v~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~v~~G~~~s~~l~~~~  496 (498)
                      ++.+.+  |++|+||.+|+++|+++|+||+||+|.+||||+|+..++..|++|+.+.+.+.+|.+|+||.+||++|++|+
T Consensus       321 i~~~~~--i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~d~  398 (401)
T d1a12a_         321 ISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK  398 (401)
T ss_dssp             CCSSSS--EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEEEC
T ss_pred             cCCCCC--eEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEECC
Confidence            877665  999999999999999999999999999999999999999999999887778899999999999999999999


Q ss_pred             CC
Q psy1173         497 PN  498 (498)
Q Consensus       497 ~~  498 (498)
                      ++
T Consensus       399 ~~  400 (401)
T d1a12a_         399 EQ  400 (401)
T ss_dssp             SC
T ss_pred             cc
Confidence            86
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure