Psyllid ID: psy12210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM
Secondary Structure (PSIPRED)
cccccccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccHHHccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEccccccccccccEEEcccccccccccccccccccccEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccccccccccccccEEEccccccccccHHHHHHHHHHHccccccccccccHHHHcccccHHccHHccccccccccccccccccccccccccccccEEEccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccEEccHHHHHHHHHHHHcccEEcccEEEEcHHHcccEHccccHHccccccccHHccHcccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHccccccEEEcccHHHcccccccEEEccccccEEccHHHHcccccccEEEEccccccccccHHHcccHHcccc
Coil and Loop (DISEMBL)
mprtlnnnnltylpdgvFAELFRLRTlrisensficDCHLSWLHRWLkryprlglytkcfapshikgqnildipehefkcsgpvekptgecaaepscphpcrcadgivdcrekglnkvpillpeatTELRleqnditelppkafaNYKRLRRIDLSKNQISKVAVDAFQGLksltsltlnnnnltylpdgvFAELFRLRTlrisensficDCHLSWLHRWLkryprlglytkcfapshikgqnildipehefkcsgssmetrskiyreecstdfhpynscpvekptgecaaepscphpcrcadgivdcrekglnkvpillpeattelTYMVSIDRVDKVLLYSYISNNFKRWTNRSrrleqnditelppkafANYKRLRRIRLeqnditelppkafanYKRLRRM
Flexible Loop (DISEMBL)
mprtlnnnnltylpdgVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVpillpeattelrleqnditelppkafANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNkvpillpeatteltymVSIDRVDKVLLYSYISnnfkrwtnrsrrleqnditelppkafanykRLRRIrleqnditelppkafanykrlrrm
Low Complexity Region (SEG)
MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKsltsltlnnnnltYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM
Disordered region (IsUnstruct)
********NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG********CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC**********IYREECSTDFHPYNSCPV*****ECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRL***DITELPPKAFANYKRLRRIRLE*********************
Disordered Region (DISOPRED)
MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR*M
Disordered Region (DISEMBL)
MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM
Disordered Region (DISPRO)
*PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
P24014	1504	Protein slit OS=Drosophil	yes	N/A	0.923	0.248	0.396	9e-84
Q80TR4	1531	Slit homolog 1 protein OS	yes	N/A	0.928	0.245	0.338	3e-69
O88279	1531	Slit homolog 1 protein OS	yes	N/A	0.928	0.245	0.338	8e-69
O75093	1534	Slit homolog 1 protein OS	yes	N/A	0.938	0.247	0.337	1e-67
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.925	0.246	0.341	2e-67
O75094	1523	Slit homolog 3 protein OS	no	N/A	0.925	0.246	0.343	3e-67
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.925	0.246	0.343	4e-67
Q9R1B9	1521	Slit homolog 2 protein OS	no	N/A	0.923	0.245	0.323	6e-62
Q9WVC1	766	Slit homolog 2 protein (F	no	N/A	0.925	0.489	0.325	9e-62
O94813	1529	Slit homolog 2 protein OS	no	N/A	0.943	0.249	0.321	5e-61

>sp|P24014|SLIT_DROME Protein slit OS=Drosophila melanogaster GN=sli PE=1 SV=2

 Score =  310 bits (795), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 226 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 285

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 286 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 345

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 346 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 405

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 406 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 465

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 466 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 525

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 526 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 563

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 564 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 617

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 618 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 648

A short-range repellent, controlling axon crossing of the midline and a long-range chemorepellent, controlling mesoderm migration and patterning away from the midline. May interact with extracellular matrix molecules. Repulsive ligand for the guidance receptor roundabout (robo) and prevents inappropriate midline crossing by Robo-expressing axons.
Drosophila melanogaster (taxid: 7227)

>sp|Q80TR4|SLIT1_MOUSE Slit homolog 1 protein OS=Mus musculus GN=Slit1 PE=1 SV=2

 Score =  263 bits (671), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 230/458 (50%), Gaps = 82/458 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN+T +P   F  + +LRT R+  N   CDCHL+WL +WL++ P +GL+T+C  P+
Sbjct: 187 TLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPA 246

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEP-------SCPHPCRCADGIVDCREKGLN 116
            ++G N+ ++ + EF CSG      GE A  P       SCP  C C+ GIVDCR KGL 
Sbjct: 247 SLRGLNVAEVQKGEFSCSG-----QGEAAGAPACTLSSGSCPAMCSCSSGIVDCRGKGLT 301

Query: 117 KVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS 176
            +P  LPE  TE+RLE N I  +PP AF+ Y++LRRIDLS NQI+++A DAFQGL+SL S
Sbjct: 302 AIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNS 361

Query: 177 LTLNNNNLTYLPDGVFA------------------------------------------- 193
           L L  N +T LP GVF                                            
Sbjct: 362 LVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLA 421

Query: 194 -----ELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIP 248
                 L  ++TL +++N FICDC+L WL  +L+  P      +C +P  +  + I  I 
Sbjct: 422 KGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETTGARCASPRRLANKRIGQIK 481

Query: 249 EHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDC 308
             +F+CS          Y    + D+H  NS        EC ++ +CPH CRC   +V+C
Sbjct: 482 SKKFRCSAKEQ------YFIPGTEDYH-LNS--------ECTSDVACPHKCRCEASVVEC 526

Query: 309 REKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR-RLEQNDITEL 367
               L+K+P  +P++TTEL     ++  +  +L +  +  FK+ ++  +  L  N ++E+
Sbjct: 527 SSLKLSKIPERIPQSTTEL----RLNNNEISILEA--TGLFKKLSHLKKINLSNNKVSEI 580

Query: 368 PPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
               F     +  + L  N +  +    F     LR +
Sbjct: 581 EDGTFEGAASVSELHLTANQLESIRSGMFRGLDGLRTL 618

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Mus musculus (taxid: 10090)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score =  261 bits (666), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 231/458 (50%), Gaps = 82/458 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN+T +P   F  + +LRT R+  N   CDCHL+WL +WL++ P +GL+T+C  P+
Sbjct: 187 TLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPA 246

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEP-------SCPHPCRCADGIVDCREKGLN 116
            ++G N+ ++ + EF CSG      GE A  P       SCP  C C++GIVDCR KGL 
Sbjct: 247 SLRGLNVAEVQKSEFSCSG-----QGEAAQVPACTLSSGSCPAMCSCSNGIVDCRGKGLT 301

Query: 117 KVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS 176
            +P  LPE  TE+RLE N I  +PP AF+ Y++LRRIDLS NQI+++A DAFQGL+SL S
Sbjct: 302 AIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNS 361

Query: 177 LTLNNNNLTYLPDGVFA------------------------------------------- 193
           L L  N +T LP GVF                                            
Sbjct: 362 LVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLA 421

Query: 194 -----ELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIP 248
                 L  ++TL +++N FICDC+L WL  +L+  P      +C +P  +  + I  I 
Sbjct: 422 KGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETTGARCASPRRLANKRIGQIK 481

Query: 249 EHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDC 308
             +F+CS          Y    + D+H  NS        EC ++ +CPH CRC   +V+C
Sbjct: 482 SKKFRCSAKEQ------YFIPGTEDYH-LNS--------ECTSDVACPHKCRCEASVVEC 526

Query: 309 REKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR-RLEQNDITEL 367
               L+K+P  +P++TTEL     ++  +  +L +  +  FK+ ++  +  L  N ++E+
Sbjct: 527 SGLKLSKIPERIPQSTTEL----RLNNNEISILEA--TGLFKKLSHLKKINLSNNKVSEI 580

Query: 368 PPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
               F     +  + L  N +  +    F     LR +
Sbjct: 581 EDGTFEGATSVSELHLTANQLESVRSGMFRGLDGLRTL 618

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score =  257 bits (657), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/454 (33%), Positives = 231/454 (50%), Gaps = 74/454 (16%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN+T +P   F  + +LRT R+  N   CDCHL+WL +WL++ P +GL+T+C  P+
Sbjct: 187 TLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCSGPA 246

Query: 64  HIKGQNILDIPEHEFKCSGPVEK---PTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI 120
            ++G N+ ++ + EF CSG  E    PT   ++  SCP  C C++GIVDCR KGL  +P 
Sbjct: 247 SLRGLNVAEVQKSEFSCSGQGEAGRVPTCTLSSG-SCPAMCTCSNGIVDCRGKGLTAIPA 305

Query: 121 LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN 180
            LPE  TE+RLE N I  +PP AF+ Y++LRRIDLS NQI+++A DAFQGL+SL SL L 
Sbjct: 306 NLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLVLY 365

Query: 181 NNNLTYLPDGVFA----------------------------------------------- 193
            N +T LP GVF                                                
Sbjct: 366 GNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAKGTF 425

Query: 194 -ELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF 252
             L  ++TL +++N FICDC+L WL  +L+  P      +C +P  +  + I  I   +F
Sbjct: 426 TSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETSGARCASPRRLANKRIGQIKSKKF 485

Query: 253 KCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG 312
           +CS      + + +     T+ +  NS        EC ++  CPH CRC   +V+C    
Sbjct: 486 RCS-----AKEQYFIP--GTEDYQLNS--------ECNSDVVCPHKCRCEANVVECSSLK 530

Query: 313 LNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR-RLEQNDITELPPKA 371
           L K+P  +P++T EL     ++  +  +L +  +  FK+ T+  +  L  N ++E+   A
Sbjct: 531 LTKIPERIPQSTAEL----RLNNNEISILEA--TGMFKKLTHLKKINLSNNKVSEIEDGA 584

Query: 372 FANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
           F     +  + L  N +  +    F     LR +
Sbjct: 585 FEGAASVSELHLTANQLESIRSGMFRGLDGLRTL 618

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Homo sapiens (taxid: 9606)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score =  256 bits (654), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 224/451 (49%), Gaps = 76/451 (16%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN++ +    F  + ++RTLR+  N   CDCHL+WL  WL++   +G +T C AP 
Sbjct: 187 TLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTIGQFTLCMAPV 246

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
           H++G ++ D+ + E+ C GP  +     A   SCP  C C++ IVDCR KGL ++P  LP
Sbjct: 247 HLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCRGKGLTEIPANLP 306

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           E   E+RLEQN I  +P  AF  YK+L+RID+SKNQIS +A DAFQGLKSLTSL L  N 
Sbjct: 307 EGIVEIRLEQNSIKSIPAGAFIQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNK 366

Query: 184 LTYLP------------------------------------------------DGVFAEL 195
           +T +P                                                 G+FA L
Sbjct: 367 ITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPL 426

Query: 196 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++TL +++N F+CDCHL WL  +L+  P      +C +P  +  + I  I   +F+CS
Sbjct: 427 QSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCS 486

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
           G      S+ YR   S+               EC  +  CP  CRC   IVDC  + L++
Sbjct: 487 G------SEDYRNRFSS---------------ECFMDLVCPEKCRCEGTIVDCSNQKLSR 525

Query: 316 VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFAN 374
           +P  LPE TT+L     ++  D  +L +  +  FK+  N R   L  N I E+   AF  
Sbjct: 526 IPSHLPEYTTDL----RLNDNDIAVLEA--TGIFKKLPNLRKINLSNNRIKEVREGAFDG 579

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ + L  N +  +  + F     L+ +
Sbjct: 580 AAGVQELMLTGNQLETMHGRMFRGLSGLKTL 610

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 220/451 (48%), Gaps = 76/451 (16%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN++ +    F  + ++RTLR+  N   CDCHL+WL  WL++   +G +T C AP 
Sbjct: 187 TLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTLCMAPV 246

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
           H++G N+ D+ + E+ C  P  +P    A   SCP PC C++ IVDCR KGL ++P  LP
Sbjct: 247 HLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGLMEIPANLP 306

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           E   E+RLEQN I  +P  AF  YK+L+RID+SKNQIS +A DAFQGLKSLTSL L  N 
Sbjct: 307 EGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNK 366

Query: 184 LT------------------------------------------------YLPDGVFAEL 195
           +T                                                 +  G+FA L
Sbjct: 367 ITEIVKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFAPL 426

Query: 196 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++TL +++N F+CDCHL WL  +L+  P      +C +P  +  + I  I   +F+CS
Sbjct: 427 QSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCS 486

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
           GS  + RS+                     + EC  +  CP  CRC   IVDC  + L +
Sbjct: 487 GSE-DYRSRF--------------------SSECFMDLVCPEKCRCEGTIVDCSNQKLVR 525

Query: 316 VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFAN 374
           +P  LPE  T+L      D    VL  + I   FK+  N R   L  N I E+   AF  
Sbjct: 526 IPSHLPEYVTDLRLN---DNEVSVLEATGI---FKKLPNLRKINLSNNKIKEVREGAFDG 579

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ + L  N +  +  + F     L+ +
Sbjct: 580 AASVQELMLTGNQLETVHGRVFRGLSGLKTL 610

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Homo sapiens (taxid: 9606)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score =  255 bits (651), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 220/451 (48%), Gaps = 76/451 (16%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN++ +    F  + ++RTLR+  N   CDCHL+WL  WL++   +G +T C AP 
Sbjct: 187 TLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTIGQFTLCMAPV 246

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
           H++G ++ D+ + E+ C GP  +     A   SCP  C C++ IVDCR KGL ++P  LP
Sbjct: 247 HLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCRGKGLTEIPANLP 306

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           E   E+RLEQN I  +P  AF  YK+L+RID+SKNQIS +A DAFQGLKSLTSL L  N 
Sbjct: 307 EGIVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSLVLYGNK 366

Query: 184 LTYLP------------------------------------------------DGVFAEL 195
           +T +P                                                 G+F  L
Sbjct: 367 ITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFVPL 426

Query: 196 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++TL +++N F+CDCHL WL  +L+  P      +C +P  +  + I  I   +F+CS
Sbjct: 427 QSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQIKSKKFRCS 486

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
           G      S+ YR   S+               EC  +  CP  CRC   IVDC  + L +
Sbjct: 487 G------SEDYRNRFSS---------------ECFMDLVCPEKCRCEGTIVDCSNQKLAR 525

Query: 316 VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFAN 374
           +P  LPE TT+L      D    VL  + I   FK+  N R   L  N I E+   AF  
Sbjct: 526 IPSHLPEYTTDLRLN---DNDISVLEATGI---FKKLPNLRKINLSNNRIKEVREGAFDG 579

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ + L  N +  +  + F     L+ +
Sbjct: 580 AAGVQELMLTGNQLETMHGRMFRGLSSLKTL 610

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|Q9R1B9|SLIT2_MOUSE Slit homolog 2 protein OS=Mus musculus GN=Slit2 PE=2 SV=2

 Score =  238 bits (607), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 219/451 (48%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct: 181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
           H++G N+ ++ + EF CSG        C+    CP  C C++ IVDCR KGL ++P  LP
Sbjct: 241 HLRGHNVAEVQKREFVCSGHQSFMAPSCSV-LHCPAACTCSNNIVDCRGKGLTEIPTNLP 299

Query: 124 EATTELRLEQN------------------------DITELPPKAFANYKRLRRIDLSKNQ 159
           E  TE+RLEQN                         I+EL P AF   + L  + L  N+
Sbjct: 300 ETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLYGNK 359

Query: 160 ISKVA------------------------VDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195
           I+++                         VDAFQ L +L  L+L +N L  +  G F+ L
Sbjct: 360 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTFSAL 419

Query: 196 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDCHL WL  +L   P      +C +P  +  + I  I   +F+CS
Sbjct: 420 RAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCS 479

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
           G+  + RSK+                    +G+C A+ +CP  CRC    VDC  + LNK
Sbjct: 480 GTE-DYRSKL--------------------SGDCFADLACPEKCRCEGTTVDCSNQRLNK 518

Query: 316 VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFAN 374
           +P  +P+ T EL     ++  +  +L +  +  FK+    R      N IT++   AF  
Sbjct: 519 IPDHIPQYTAEL----RLNNNEFTVLEA--TGIFKKLPQLRKINFSNNKITDIEEGAFEG 572

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              +  I L  N +  +  K F   + L+ +
Sbjct: 573 ASGVNEILLTSNRLENVQHKMFKGLESLKTL 603

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development, may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system, appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Mus musculus (taxid: 10090)

>sp|Q9WVC1|SLIT2_RAT Slit homolog 2 protein (Fragment) OS=Rattus norvegicus GN=Slit2 PE=1 SV=3

 Score =  237 bits (605), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 220/454 (48%), Gaps = 79/454 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct: 181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPS---CPHPCRCADGIVDCREKGLNKVPI 120
           H++G N+ ++ + EF CS   E      A   S   CP  C C++ IVDCR KGL ++P 
Sbjct: 241 HLRGHNVAEVQKREFVCSDEEEGHQSFMAPSCSVLHCPIACTCSNNIVDCRGKGLTEIPT 300

Query: 121 LLPEATTELRLEQN------------------------DITELPPKAFANYKRLRRIDLS 156
            LPE  TE+RLEQN                         I+EL P AF   + L  + L 
Sbjct: 301 NLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLY 360

Query: 157 KNQISKVA------------------------VDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
            N+I+++                         VDAFQ L +L  L+L +N L  +  G F
Sbjct: 361 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTVAKGTF 420

Query: 193 AELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF 252
           + L  ++T+ +++N FICDCHL WL  +L   P      +C +P  +  + I  I   +F
Sbjct: 421 SALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF 480

Query: 253 KCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG 312
           +CSG+  + RSK+                    +G+C A+ +CP  CRC    VDC  + 
Sbjct: 481 RCSGTE-DYRSKL--------------------SGDCFADLACPEKCRCEGTTVDCSNQK 519

Query: 313 LNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKA 371
           LNK+P  +P+ T EL     ++  +  +L +  +  FK+    R   L  N IT++   A
Sbjct: 520 LNKIPDHIPQYTAEL----RLNNNEFTVLEA--TGIFKKLPQLRKINLSNNKITDIEEGA 573

Query: 372 FANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
           F     +  I L  N +  +  K F   + L+ +
Sbjct: 574 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 607

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. Seems to be involved in regulating leukocyte migration.

Rattus norvegicus (taxid: 10116)

>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1

 Score =  235 bits (599), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 215/451 (47%), Gaps = 69/451 (15%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct: 181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
           H++G N+ ++ + EF CSG        C+    CP  C C++ IVDCR KGL ++P  LP
Sbjct: 241 HLRGHNVAEVQKREFVCSGHQSFMAPSCSV-LHCPAACTCSNNIVDCRGKGLTEIPTNLP 299

Query: 124 EATTELRLEQN------------------------DITELPPKAFANYKRLRRIDLSKNQ 159
           E  TE+RLEQN                         I+EL P AF   + L  + L  N+
Sbjct: 300 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 359

Query: 160 ISKVA------------------------VDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195
           I+++                         VDAFQ L +L  L+L +N L  +  G F+ L
Sbjct: 360 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 419

Query: 196 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDCHL WL  +L   P      +C +P  +  + I  I   +F+CS
Sbjct: 420 RAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCS 479

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
                             F P       K +G+C A+ +CP  CRC    VDC  + LNK
Sbjct: 480 AKEQY-------------FIPGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLNK 526

Query: 316 VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFAN 374
           +P  +P+ T EL     ++  +  +L +  +  FK+    R      N IT++   AF  
Sbjct: 527 IPEHIPQYTAEL----RLNNNEFTVLEA--TGIFKKLPQLRKINFSNNKITDIEEGAFEG 580

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              +  I L  N +  +  K F   + L+ +
Sbjct: 581 ASGVNEILLTSNRLENVQHKMFKGLESLKTL 611

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
442623865	2157	slit, isoform F [Drosophila melanogaster	0.923	0.173	0.396	2e-82
195334727	1506	GM20113 [Drosophila sechellia] gi|194125	0.923	0.248	0.396	5e-82
198461203	1527	GA21014 [Drosophila pseudoobscura pseudo	0.923	0.244	0.396	5e-82
17136484	1469	slit, isoform B [Drosophila melanogaster	0.923	0.254	0.396	5e-82
17136480	1504	slit, isoform C [Drosophila melanogaster	0.923	0.248	0.396	6e-82
195583744	1506	GD25590 [Drosophila simulans] gi|1941936	0.923	0.248	0.396	6e-82
308818232	1474	RT09973p [Drosophila melanogaster]	0.923	0.253	0.396	6e-82
324096448	1468	RT11125p [Drosophila melanogaster]	0.923	0.254	0.396	6e-82
195488431	1507	GE14122 [Drosophila yakuba] gi|194178414	0.923	0.248	0.396	6e-82
308193419	1468	RT09980p [Drosophila melanogaster]	0.923	0.254	0.396	6e-82

>gi|442623865|ref|NP_001261017.1| slit, isoform F [Drosophila melanogaster] gi|440214437|gb|AGB93549.1| slit, isoform F [Drosophila melanogaster]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 226 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 285

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 286 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 345

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 346 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 405

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 406 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 465

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 466 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 525

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 526 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 563

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 564 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 617

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 618 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 648

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195334727|ref|XP_002034028.1| GM20113 [Drosophila sechellia] gi|194125998|gb|EDW48041.1| GM20113 [Drosophila sechellia]

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 228 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 287

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 288 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 347

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 348 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 407

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 408 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 467

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 468 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 527

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 528 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 565

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 566 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 619

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 620 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 650

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198461203|ref|XP_001361946.2| GA21014 [Drosophila pseudoobscura pseudoobscura] gi|198137269|gb|EAL26525.2| GA21014 [Drosophila pseudoobscura pseudoobscura]

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP   F  L RLR LR+S+N F CDCHLSWL R+L+  PRL  YT+C +PS
Sbjct: 249 TLNNNNLTALPHNAFGGLGRLRALRLSDNPFACDCHLSWLSRYLRSAPRLAPYTRCQSPS 308

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 309 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 368

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 369 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 428

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 429 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 488

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 489 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 548

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 549 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCAGRGLKE 586

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + +  ++   L+  + +  K        L++N +T + P AF  
Sbjct: 587 IPRDIPLHTTELLLNDNELGSINSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 640

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 641 ASHIQDLQLGENKIKEISNKMFLGLHQLKTL 671

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136484|ref|NP_476729.1| slit, isoform B [Drosophila melanogaster] gi|21645372|gb|AAM70966.1| slit, isoform B [Drosophila melanogaster]

 Score =  311 bits (796), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 202 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 261

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 262 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 321

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 322 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 381

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 382 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 441

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 442 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 501

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 502 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 539

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 540 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 593

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 594 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 624

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136480|ref|NP_476727.1| slit, isoform C [Drosophila melanogaster] gi|161077132|ref|NP_001097334.1| slit, isoform E [Drosophila melanogaster] gi|33302576|sp|P24014.2|SLIT_DROME RecName: Full=Protein slit; Short=dSlit; Contains: RecName: Full=Protein slit N-product; Contains: RecName: Full=Protein slit C-product; Flags: Precursor gi|7303028|gb|AAF58097.1| slit, isoform C [Drosophila melanogaster] gi|157400354|gb|ABV53817.1| slit, isoform E [Drosophila melanogaster]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 226 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 285

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 286 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 345

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 346 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 405

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 406 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 465

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 466 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 525

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 526 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 563

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 564 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 617

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 618 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 648

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195583744|ref|XP_002081676.1| GD25590 [Drosophila simulans] gi|194193685|gb|EDX07261.1| GD25590 [Drosophila simulans]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 228 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 287

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 288 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 347

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 348 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 407

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 408 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 467

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 468 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 527

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 528 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 565

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 566 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 619

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 620 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 650

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308818232|gb|ADO51076.1| RT09973p [Drosophila melanogaster]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 193 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 252

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 253 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 312

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 313 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 372

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 373 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 432

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 433 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 492

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 493 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 530

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 531 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 584

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 585 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 615

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324096448|gb|ADY17753.1| RT11125p [Drosophila melanogaster]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 190 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 249

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 250 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 309

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 310 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 369

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 370 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 429

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 430 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 489

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 490 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 527

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 528 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 581

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 582 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 612

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195488431|ref|XP_002092313.1| GE14122 [Drosophila yakuba] gi|194178414|gb|EDW92025.1| GE14122 [Drosophila yakuba]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 229 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 288

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 289 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 348

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 349 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 408

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 409 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 468

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 469 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 528

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 529 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 566

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 567 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 620

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 621 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 651

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|308193419|gb|ADO16251.1| RT09980p [Drosophila melanogaster]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 179/451 (39%), Positives = 243/451 (53%), Gaps = 77/451 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct: 190 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 249

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
            +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct: 250 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 309

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK LT+L L  N 
Sbjct: 310 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 369

Query: 184 LTYLPDGVF--------------------AELFR-------------------------- 197
           +  LP GVF                     + FR                          
Sbjct: 370 IKDLPSGVFKGLGSLQLLLLNANEISCIRKDAFRDLHSLSLLSLYDNNIQSLANGTFDAM 429

Query: 198 --LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             ++T+ +++N FICDC+L WL  +L + P      +C +P  +  + I  + E +FKCS
Sbjct: 430 KSIKTVHLAKNPFICDCNLRWLADYLHKNPIETSGARCESPKRMHRRRIESLREEKFKCS 489

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
               E R K+                    +GEC  +  CP  C C    VDC  +GL +
Sbjct: 490 WD--ELRMKL--------------------SGECRMDSDCPAMCHCEGTTVDCTGRGLKE 527

Query: 316 VPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFAN 374
           +P  +P  TTEL    + + R+    L+  + +  K        L++N +T + P AF  
Sbjct: 528 IPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK------LELKRNQLTGIEPNAFEG 581

Query: 375 YKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              ++ ++L +N I E+  K F    +L+ +
Sbjct: 582 ASHIQELQLGENKIKEISNKMFLGLHQLKTL 612

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
FB|FBgn0264089	1504	sli "slit" [Drosophila melanog	0.511	0.137	0.579	1.9e-63
UNIPROTKB|F1LN28	680	Slit2 "Slit homolog 2 protein"	0.511	0.304	0.471	4.2e-63
RGD|69310	766	Slit2 "slit homolog 2 (Drosoph	0.511	0.270	0.466	5.1e-61
UNIPROTKB|F1NHG5	1525	SLIT2 "Uncharacterized protein	0.508	0.135	0.473	6.4e-60
UNIPROTKB|F1MLJ7	1532	SLIT2 "Uncharacterized protein	0.508	0.134	0.473	6.4e-60
UNIPROTKB|O94813	1529	SLIT2 "Slit homolog 2 protein"	0.508	0.134	0.473	8.3e-60
MGI|MGI:1315205	1521	Slit2 "slit homolog 2 (Drosoph	0.508	0.135	0.468	1.3e-59
UNIPROTKB|E1C7Z9	819	E1C7Z9 "Uncharacterized protei	0.511	0.252	0.460	3.1e-59
UNIPROTKB|F1P8A1	1530	SLIT2 "Uncharacterized protein	0.508	0.134	0.473	3.6e-59
ZFIN|ZDB-GENE-010306-3	1512	slit2 "slit (Drosophila) homol	0.503	0.134	0.458	3.6e-55

FB|FBgn0264089 sli "slit" [Drosophila melanogaster (taxid:7227)]

 Score = 630 (226.8 bits), Expect = 1.9e-63, Sum P(3) = 1.9e-63
 Identities = 120/207 (57%), Positives = 143/207 (69%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNNLT LP  +F  L RLR LR+S+N F CDCHLSWL R+L+   RL  YT+C +PS
Sbjct:   226 TLNNNNLTSLPHNIFGGLGRLRALRLSDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 285

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
              +KGQN+ D+ + EFKCSG  E    EC AE SCPHPCRCADGIVDCREK L  VP+ LP
Sbjct:   286 QLKGQNVADLHDQEFKCSGLTEHAPMECGAENSCPHPCRCADGIVDCREKSLTSVPVTLP 345

Query:   124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXX 183
             + TTELRLEQN ITELPPK+F++++RLRRIDLS N IS++A DA  GLK           
Sbjct:   346 DDTTELRLEQNFITELPPKSFSSFRRLRRIDLSNNNISRIAHDALSGLKQLTTLVLYGNK 405

Query:   184 XXYLPDGVFAELFRLRTLRISENSFIC 210
                LP GVF  L  L+ L ++ N   C
Sbjct:   406 IKDLPSGVFKGLGSLQLLLLNANEISC 432

GO:0031012 "extracellular matrix" evidence=IDA

GO:0008347 "glial cell migration" evidence=IMP

GO:0050919 "negative chemotaxis" evidence=IMP

GO:0007509 "mesoderm migration involved in gastrulation" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=TAS

GO:0008078 "mesodermal cell migration" evidence=IMP

GO:0007411 "axon guidance" evidence=IGI;IMP;IPI

GO:0035385 "Roundabout signaling pathway" evidence=IGI

GO:0030182 "neuron differentiation" evidence=IMP

GO:0010632 "regulation of epithelial cell migration" evidence=IMP

GO:2000274 "regulation of epithelial cell migration, open tracheal system" evidence=IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007427 "epithelial cell migration, open tracheal system" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP

GO:0071666 "Slit-Robo signaling complex" evidence=IDA

GO:0048495 "Roundabout binding" evidence=IPI

GO:0008201 "heparin binding" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0007502 "digestive tract mesoderm development" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1LN28 Slit2 "Slit homolog 2 protein" [Rattus norvegicus (taxid:10116)]

 Score = 522 (188.8 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
 Identities = 99/210 (47%), Positives = 132/210 (62%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct:    95 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 154

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPS---CPHPCRCADGIVDCREKGLNKVPI 120
             H++G N+ ++ + EF CSGP +      A   S   CP  C C++ IVDCR KGL ++P 
Sbjct:   155 HLRGHNVAEVQKREFVCSGPEKSHQSFMAPSCSVLHCPIACTCSNNIVDCRGKGLTEIPT 214

Query:   121 LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXX 180
              LPE  TE+RLEQN I  +PP AF+ YK+LRR+DLS NQIS++A DAFQGL+        
Sbjct:   215 NLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLY 274

Query:   181 XXXXXYLPDGVFAELFRLRTLRISENSFIC 210
                   LP  +F  LF L+ L ++ N   C
Sbjct:   275 GNKITELPKSLFEGLFSLQLLLLNANKINC 304

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|69310 Slit2 "slit homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 509 (184.2 bits), Expect = 5.1e-61, Sum P(2) = 5.1e-61
 Identities = 98/210 (46%), Positives = 130/210 (61%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct:   181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPS---CPHPCRCADGIVDCREKGLNKVPI 120
             H++G N+ ++ + EF CS   E      A   S   CP  C C++ IVDCR KGL ++P 
Sbjct:   241 HLRGHNVAEVQKREFVCSDEEEGHQSFMAPSCSVLHCPIACTCSNNIVDCRGKGLTEIPT 300

Query:   121 LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXX 180
              LPE  TE+RLEQN I  +PP AF+ YK+LRR+DLS NQIS++A DAFQGL+        
Sbjct:   301 NLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLY 360

Query:   181 XXXXXYLPDGVFAELFRLRTLRISENSFIC 210
                   LP  +F  LF L+ L ++ N   C
Sbjct:   361 GNKITELPKSLFEGLFSLQLLLLNANKINC 390

GO:0001656 "metanephros development" evidence=ISO

GO:0001657 "ureteric bud development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=ISO

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006935 "chemotaxis" evidence=IEA

GO:0007409 "axonogenesis" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0007420 "brain development" evidence=IEP

GO:0008045 "motor neuron axon guidance" evidence=ISO

GO:0008201 "heparin binding" evidence=IEA;ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0010593 "negative regulation of lamellipodium assembly" evidence=ISO

GO:0010596 "negative regulation of endothelial cell migration" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=ISO

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0021510 "spinal cord development" evidence=IEP

GO:0021772 "olfactory bulb development" evidence=ISO

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=ISO

GO:0022029 "telencephalon cell migration" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030837 "negative regulation of actin filament polymerization" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=ISO

GO:0033563 "dorsal/ventral axon guidance" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043116 "negative regulation of vascular permeability" evidence=ISO

GO:0043237 "laminin-1 binding" evidence=ISO

GO:0043394 "proteoglycan binding" evidence=ISO

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IDA

GO:0045499 "chemorepellent activity" evidence=ISO

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=ISO

GO:0048812 "neuron projection morphogenesis" evidence=ISO

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=IMP

GO:0050919 "negative chemotaxis" evidence=ISO

GO:0050929 "induction of negative chemotaxis" evidence=ISO

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=ISO

GO:0051414 "response to cortisol stimulus" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=ISO

GO:0061364 "apoptotic process involved in luteolysis" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

GO:0071504 "cellular response to heparin" evidence=ISO

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=ISO

GO:0071676 "negative regulation of mononuclear cell migration" evidence=ISO

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=ISO

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=IDA

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=ISO

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=ISO

UNIPROTKB|F1NHG5 SLIT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 523 (189.2 bits), Expect = 6.4e-60, Sum P(2) = 6.4e-60
 Identities = 98/207 (47%), Positives = 130/207 (62%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  P+
Sbjct:   177 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPA 236

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
             H++G N+ ++ + EF CSG        C+    CP  C C++ IVDCR KGL ++P  LP
Sbjct:   237 HLRGHNVAEVQKREFVCSGHQSFMAPSCSVL-HCPAACTCSNNIVDCRGKGLTEIPTNLP 295

Query:   124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXX 183
             E  TE+RLEQN I  +PP AF+ YK+LRRIDLS NQIS+ A DAFQGL+           
Sbjct:   296 ETITEIRLEQNSIKVIPPGAFSPYKKLRRIDLSNNQISEAAPDAFQGLRSLNSLVLYGNK 355

Query:   184 XXYLPDGVFAELFRLRTLRISENSFIC 210
                LP G+F  LF L+ L ++ N   C
Sbjct:   356 ITELPKGLFEGLFSLQLLLLNANKINC 382

GO:0005509 "calcium ion binding" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0010593 "negative regulation of lamellipodium assembly" evidence=IEA

GO:0010596 "negative regulation of endothelial cell migration" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030837 "negative regulation of actin filament polymerization" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0043394 "proteoglycan binding" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0050929 "induction of negative chemotaxis" evidence=IEA

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0071504 "cellular response to heparin" evidence=IEA

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=IEA

GO:0071676 "negative regulation of mononuclear cell migration" evidence=IEA

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=IEA

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=IEA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

UNIPROTKB|F1MLJ7 SLIT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 527 (190.6 bits), Expect = 6.4e-60, Sum P(2) = 6.4e-60
 Identities = 99/209 (47%), Positives = 134/209 (64%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct:   181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query:    64 HIKGQNILDIPEHEFKCSGPV--EKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
             H++G N+ ++ + EF CSG    ++P  +C+    CP  C C++ IVDCR KGL ++P  
Sbjct:   241 HLRGHNVAEVQKREFVCSGGTSGKEPACQCSVL-HCPAACTCSNNIVDCRGKGLTEIPTN 299

Query:   122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXX 181
             LPE  TE+RLEQN I  +PP AF+ YK+LRRIDLS NQIS++A DAFQGL+         
Sbjct:   300 LPETITEIRLEQNSIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 359

Query:   182 XXXXYLPDGVFAELFRLRTLRISENSFIC 210
                  LP  +F  LF L+ L ++ N   C
Sbjct:   360 NKITELPKSLFEGLFSLQLLLLNANKINC 388

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=IEA

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=IEA

GO:0071676 "negative regulation of mononuclear cell migration" evidence=IEA

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=IEA

GO:0071504 "cellular response to heparin" evidence=IEA

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0050929 "induction of negative chemotaxis" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0043394 "proteoglycan binding" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0030837 "negative regulation of actin filament polymerization" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0010596 "negative regulation of endothelial cell migration" evidence=IEA

GO:0010593 "negative regulation of lamellipodium assembly" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O94813 SLIT2 "Slit homolog 2 protein" [Homo sapiens (taxid:9606)]

 Score = 520 (188.1 bits), Expect = 8.3e-60, Sum P(2) = 8.3e-60
 Identities = 98/207 (47%), Positives = 130/207 (62%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct:   181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
             H++G N+ ++ + EF CSG        C+    CP  C C++ IVDCR KGL ++P  LP
Sbjct:   241 HLRGHNVAEVQKREFVCSGHQSFMAPSCSVL-HCPAACTCSNNIVDCRGKGLTEIPTNLP 299

Query:   124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXX 183
             E  TE+RLEQN I  +PP AF+ YK+LRRIDLS NQIS++A DAFQGL+           
Sbjct:   300 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 359

Query:   184 XXYLPDGVFAELFRLRTLRISENSFIC 210
                LP  +F  LF L+ L ++ N   C
Sbjct:   360 ITELPKSLFEGLFSLQLLLLNANKINC 386

GO:0001656 "metanephros development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IMP

GO:0050929 "induction of negative chemotaxis" evidence=IDA

GO:0050772 "positive regulation of axonogenesis" evidence=TAS

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0048495 "Roundabout binding" evidence=IPI

GO:0043237 "laminin-1 binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0050919 "negative chemotaxis" evidence=IDA;IMP

GO:0030336 "negative regulation of cell migration" evidence=IMP;IDA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IDA;IMP

GO:0010593 "negative regulation of lamellipodium assembly" evidence=IDA

GO:0005095 "GTPase inhibitor activity" evidence=IDA

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=IDA

GO:0016020 "membrane" evidence=NAS

GO:0010596 "negative regulation of endothelial cell migration" evidence=IDA

GO:0043116 "negative regulation of vascular permeability" evidence=IDA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=IDA

GO:0030837 "negative regulation of actin filament polymerization" evidence=IDA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IDA

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=IDA

GO:0043394 "proteoglycan binding" evidence=IPI

GO:0048846 "axon extension involved in axon guidance" evidence=IDA

GO:0071504 "cellular response to heparin" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=IDA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051414 "response to cortisol stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IDA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0007411 "axon guidance" evidence=IDA;TAS

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=IDA

GO:0005576 "extracellular region" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0035385 "Roundabout signaling pathway" evidence=IC;IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=ISS

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IDA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IMP

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=IDA

GO:0071676 "negative regulation of mononuclear cell migration" evidence=IDA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IDA

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=IMP

MGI|MGI:1315205 Slit2 "slit homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 519 (187.8 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
 Identities = 97/207 (46%), Positives = 130/207 (62%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct:   181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
             H++G N+ ++ + EF CSG        C+    CP  C C++ IVDCR KGL ++P  LP
Sbjct:   241 HLRGHNVAEVQKREFVCSGHQSFMAPSCSVL-HCPAACTCSNNIVDCRGKGLTEIPTNLP 299

Query:   124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXX 183
             E  TE+RLEQN I  +PP AF+ YK+LRR+DLS NQIS++A DAFQGL+           
Sbjct:   300 ETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLVLYGNK 359

Query:   184 XXYLPDGVFAELFRLRTLRISENSFIC 210
                LP  +F  LF L+ L ++ N   C
Sbjct:   360 ITELPKSLFEGLFSLQLLLLNANKINC 386

GO:0001656 "metanephros development" evidence=IMP

GO:0001657 "ureteric bud development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=ISO

GO:0005095 "GTPase inhibitor activity" evidence=ISO

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP;IDA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP;IDA

GO:0008045 "motor neuron axon guidance" evidence=ISO

GO:0008201 "heparin binding" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009986 "cell surface" evidence=ISO

GO:0010593 "negative regulation of lamellipodium assembly" evidence=ISO

GO:0010596 "negative regulation of endothelial cell migration" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=IGI;IMP

GO:0021772 "olfactory bulb development" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=ISO

GO:0022029 "telencephalon cell migration" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030837 "negative regulation of actin filament polymerization" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO;IGI;IMP

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI;IMP

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043116 "negative regulation of vascular permeability" evidence=ISO

GO:0043237 "laminin-1 binding" evidence=ISO

GO:0043394 "proteoglycan binding" evidence=ISO

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISO

GO:0045499 "chemorepellent activity" evidence=IMP

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=ISO

GO:0048812 "neuron projection morphogenesis" evidence=IGI;IMP

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO;IMP

GO:0050929 "induction of negative chemotaxis" evidence=ISO

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IGI;IMP

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

GO:0071504 "cellular response to heparin" evidence=ISO

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=ISO

GO:0071676 "negative regulation of mononuclear cell migration" evidence=ISO

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=ISO

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=ISO

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=ISO

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

UNIPROTKB|E1C7Z9 E1C7Z9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 507 (183.5 bits), Expect = 3.1e-59, Sum P(3) = 3.1e-59
 Identities = 99/215 (46%), Positives = 135/215 (62%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T +P   F  + +LRT R+  N   CDCHL+WL +WL++ P +GL+T+C AP+
Sbjct:   194 TLNNNNITSIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLAQWLRQRPTIGLFTQCAAPA 253

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGE-CA-AEPSCPHPCRCADGIVDCREKGLNKVPIL 121
              ++G N+ +I ++EF CSG  +    + C+ +  SCP  C C++GIVDCR KGL  +P  
Sbjct:   254 QLRGLNVAEIQKNEFSCSGQADGVHAQLCSLSSGSCPAMCTCSNGIVDCRGKGLTAIPAN 313

Query:   122 LPEATTELRLEQNDITELPPKAFANYKRLRRI------DLSKNQISKVAVDAFQGLKXXX 175
             LPE  TE+RLE N I  +PP AF+ YK+LRRI      DLS NQIS++A DAFQGL+   
Sbjct:   314 LPETMTEIRLELNGIKSIPPGAFSPYKKLRRILPLGFRDLSNNQISEIAPDAFQGLRSLN 373

Query:   176 XXXXXXXXXXYLPDGVFAELFRLRTLRISENSFIC 210
                        LP GVF  LF L+ L ++ N   C
Sbjct:   374 SLVLYGNKITDLPKGVFGGLFALQLLLLNANKINC 408

GO:0005615 "extracellular space" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0022028 "tangential migration from the subventricular zone to the olfactory bulb" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0050919 "negative chemotaxis" evidence=IEA

UNIPROTKB|F1P8A1 SLIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 521 (188.5 bits), Expect = 3.6e-59, Sum P(2) = 3.6e-59
 Identities = 98/207 (47%), Positives = 130/207 (62%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN+T L    F  + +LRT R+  N+  CDCHL+WL  WL++ PR+GLYT+C  PS
Sbjct:   181 TLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCMGPS 240

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
             H++G N+ ++ + EF CSG        C+    CP  C C++ IVDCR KGL ++P  LP
Sbjct:   241 HLRGHNVAEVQKREFVCSGHQSFMAPSCSVL-HCPAACTCSNNIVDCRGKGLTEIPTNLP 299

Query:   124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXX 183
             E  TE+RLEQN I  +PP AF+ YK+LRRIDLS NQIS++A DAFQGL+           
Sbjct:   300 ETITEIRLEQNSIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 359

Query:   184 XXYLPDGVFAELFRLRTLRISENSFIC 210
                LP  +F  LF L+ L ++ N   C
Sbjct:   360 ITELPKSLFEGLFSLQLLLLNANKINC 386

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-010306-3 slit2 "slit (Drosophila) homolog 2" [Danio rerio (taxid:7955)]

 Score = 502 (181.8 bits), Expect = 3.6e-55, Sum P(2) = 3.6e-55
 Identities = 95/207 (45%), Positives = 132/207 (63%)

Query:     4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
             TLNNNN++ L    F  + +LRT R+  N+ +CDC+++WL  WL++ PRLGLYT+C AP 
Sbjct:   174 TLNNNNISRLSVASFNHMPKLRTFRLHSNNLLCDCNVAWLSDWLRQRPRLGLYTQCMAPP 233

Query:    64 HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP 123
              ++G NI ++ + EF C+GP  +    C+    CP  C C++ +VDCR KGL ++P  LP
Sbjct:   234 SLRGHNIAEVQKKEFMCTGP--QSHSSCSVL-QCPELCTCSNNVVDCRGKGLTEIPTNLP 290

Query:   124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXX 183
             E  TE+RLEQN I  +P  AFA YKRLRRIDLS NQI+++A D+FQGL+           
Sbjct:   291 ETITEIRLEQNSIKIIPAGAFAPYKRLRRIDLSNNQITELASDSFQGLRSLNSLVLYGNK 350

Query:   184 XXYLPDGVFAELFRLRTLRISENSFIC 210
                LP G+F  LF L+ L ++ N   C
Sbjct:   351 ITELPKGLFDGLFSLQLLLLNANKINC 377

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007411 "axon guidance" evidence=IMP

GO:0033564 "anterior/posterior axon guidance" evidence=IMP

GO:0007414 "axonal defasciculation" evidence=IMP

GO:0001763 "morphogenesis of a branching structure" evidence=IMP

GO:0003262 "endocardial progenitor cell migration to the midline involved in heart field formation" evidence=IGI

GO:0005576 "extracellular region" evidence=IEA

GO:0030517 "negative regulation of axon extension" evidence=IGI;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	405
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-12
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-11
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	4e-08
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	4e-08
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	2e-07
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
smart00013	33	smart00013, LRRNT, Leucine rich repeat N-terminal	9e-06
smart00013	33	smart00013, LRRNT, Leucine rich repeat N-terminal	9e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	4e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-05
pfam01462	28	pfam01462, LRRNT, Leucine rich repeat N-terminal d	5e-05
pfam01462	28	pfam01462, LRRNT, Leucine rich repeat N-terminal d	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	4e-04
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	5e-04
smart00370	24	smart00370, LRR, Leucine-rich repeats, outliers	5e-04
smart00369	24	smart00369, LRR_TYP, Leucine-rich repeats, typical	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.002

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
             L L  N +T +P  AF     L+ +DLS N ++ ++ +AF GL SL SL L+ NNL
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
            L+ +DLS N+++ +   AF+GL +L  L L+ NNLT +    F+ L  LR+L +S N+ 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 5  LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK------RYPRLGLYTK 58
          ++NN ++ + +G+ A L  L  + +S N F CDC L+ L RW +      R P       
Sbjct: 2  ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEA---AL 58

Query: 59 CFAPSHIKGQNILDIPEHEFKC 80
          C  P  + GQ +L IP  +  C
Sbjct: 59 CAGPGALAGQPLLGIPLLDSGC 80

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)

Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK------RYPRLGLYTK 232
           ++NN ++ + +G+ A L  L  + +S N F CDC L+ L RW +      R P       
Sbjct: 2   ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEA---AL 58

Query: 233 CFAPSHIKGQNILDIPEHEFKC 254
           C  P  + GQ +L IP  +  C
Sbjct: 59  CAGPGALAGQPLLGIPLLDSGC 80

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 32 NSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIKGQNILDIPEHEFKCS 81
          N FICDC L WL RWL+    L   +  +C +PS ++G  +L++   EFKC 
Sbjct: 1  NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGP-LLELLHSEFKCP 51

Length = 51

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 206 NSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIKGQNILDIPEHEFKCS 255
           N FICDC L WL RWL+    L   +  +C +PS ++G  +L++   EFKC 
Sbjct: 1   NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGP-LLELLHSEFKCP 51

Length = 51

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YL 187
           L L +N  +   P+   +   L ++ LS+N++S    D     K L SL L++N L+  +
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 188 PDGVFAELFRLRTLRISEN 206
           P   F+E+  L  L +S+N
Sbjct: 540 PAS-FSEMPVLSQLDLSQN 557

Length = 968

>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTE 128
           CP PC C+   VDC  +GL +VP+ LP  TT 
Sbjct: 2   CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33

Length = 33

>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTE 326
           CP PC C+   VDC  +GL +VP+ LP  TT 
Sbjct: 2   CPAPCNCSGTAVDCSGRGLTEVPLDLPPDTTL 33

Length = 33

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           +  +  LL     EL L  N I  LP     N   L+ +DLS N +S +       L +L
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNL 188

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
            +L L+ N ++ LP      L  L  L +S NS I
Sbjct: 189 NNLDLSGNKISDLPP-EIELLSALEELDLSNNSII 222

Length = 394

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
           + +T +   AF+    L+ I L  + ++ +   AF    SLTS+T+ ++ LT + +  F+
Sbjct: 20  SSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFS 77

Query: 194 ELFRLRTLRISEN 206
               L ++ I  N
Sbjct: 78  NCSSLTSITIPSN 90

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 148 KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
             L  +DLS NQI+ +       L +L +L L+ N +T L 
Sbjct: 1   TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|201808 pfam01462, LRRNT, Leucine rich repeat N-terminal domain

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLP 123
           CP PC C+  +VDC  +GL +VP  LP
Sbjct: 2   CPAPCVCSGTVVDCSGRGLTEVPRDLP 28

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 28

>gnl|CDD|201808 pfam01462, LRRNT, Leucine rich repeat N-terminal domain

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLP 321
           CP PC C+  +VDC  +GL +VP  LP
Sbjct: 2   CPAPCVCSGTVVDCSGRGLTEVPRDLP 28

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 28

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           L  N +T +P  AF     L+ + L  N++T + P+AF+    LR
Sbjct: 7   LSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLR 51

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 120 ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL 179
           +        L L  N I++LPP+       L  +DLS N I ++ + +   LK+L+ L L
Sbjct: 182 LSNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLEL 239

Query: 180 NNNNLTYLPDGVFAELFRLRTLRISEN 206
           +NN L  LP+ +   L  L TL +S N
Sbjct: 240 SNNKLEDLPESI-GNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L L+ N+IT++PP        L+ +DLS N+I  +     + L +L +L L+ N+L+ 
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSD 177

Query: 187 LPDGVFAELFRLRTLRISEN 206
           LP  + + L  L  L +S N
Sbjct: 178 LPK-LLSNLSNLNNLDLSGN 196

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 30/121 (24%)

Query: 111 REKGLNKVPILLPEATTELRLEQNDITELP---PKAFANYKRLRRIDLSKNQISKVAVDA 167
               L  +P  LP+   E+ L  N ITELP   P A      L+ +DL  N+IS +  + 
Sbjct: 228 NSNQLTSIPATLPDTIQEMELSINRITELPERLPSA------LQSLDLFHNKISCLPENL 281

Query: 168 FQGLKSL------------------TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
            + L+ L                  T L + +N+LT LP+ +      L+TL   EN+  
Sbjct: 282 PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALT 338

Query: 210 C 210
            
Sbjct: 339 S 339

Length = 754

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 137 TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELF 196
           T +   AF N   L  I +  + ++ +   AF G  SL S+TL  ++LT +    F    
Sbjct: 1   TSIGDYAFYNCS-LTSITIPSS-VTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCS 57

Query: 197 RLRTLRISEN 206
            L ++ I  +
Sbjct: 58  SLTSITIPSS 67

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers

 Score = 36.6 bits (86), Expect = 5e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 171 LKSLTSLTLNNNNLTYLPDGVFA 193
           L +L  L L+NN L+ LP G F 
Sbjct: 1   LPNLRELDLSNNQLSSLPPGAFQ 23

Length = 24

>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated) subfamily

 Score = 36.6 bits (86), Expect = 5e-04
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 171 LKSLTSLTLNNNNLTYLPDGVFA 193
           L +L  L L+NN L+ LP G F 
Sbjct: 1   LPNLRELDLSNNQLSSLPPGAFQ 23

Length = 24

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 128 ELRLEQNDITE----LPPKAFANYKRLRRIDLSKNQI----SKVAVDAFQGLKSLTSLTL 179
           EL L  N I +       +       L  +DL+ N +    +    +    LKSL  L L
Sbjct: 169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNL 228

Query: 180 NNNNLT-----YLPDGVFAELFRLRTLRISENSFICD 211
            +NNLT      L   + +    L TL +S N    D
Sbjct: 229 GDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDD 265

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV 163
             L L  N IT+LPP   +N   L  +DLS N+I+ +
Sbjct: 4   ETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRIS 204
           N  R+  IDLS   IS     A   L  + ++ L+NN L+  +PD +F     LR L +S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 205 ENSF 208
            N+F
Sbjct: 127 NNNF 130

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 81  SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP 140
           + P E+  G  A            + +++  E GL  +P  LP   T L +  N++T LP
Sbjct: 179 AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP 238

Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
               A    LR +++S NQ++ + V        L  L++ +N LT+LP
Sbjct: 239 ----ALPPELRTLEVSGNQLTSLPVLP----PGLLELSIFSNPLTHLP 278

Length = 788

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
KOG4194|consensus	873		99.97
KOG4237|consensus	498		99.97
KOG4237|consensus	498		99.97
KOG4194|consensus	873		99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG0472|consensus	565		99.87
KOG0444|consensus	1255		99.86
KOG0472|consensus	565		99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
KOG0444|consensus	1255		99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
KOG0618|consensus	1081		99.7
KOG0618|consensus	1081		99.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.59
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.52
KOG0617|consensus	264		99.39
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
KOG0617|consensus	264		99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.12
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG0532|consensus	722		99.05
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.97
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
KOG0532|consensus	722		98.94
KOG1259|consensus	490		98.78
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.77
KOG1259|consensus	490		98.72
KOG0531|consensus	414		98.6
KOG1859|consensus	1096		98.59
KOG3207|consensus	505		98.58
KOG0531|consensus	414		98.54
KOG3207|consensus	505		98.53
PLN03150	623	hypothetical protein; Provisional	98.38
KOG1909|consensus	382		98.34
PLN03150	623	hypothetical protein; Provisional	98.28
KOG1859|consensus	1096		98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.93
KOG4658|consensus	889		97.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.82
KOG1909|consensus	382		97.76
KOG4579|consensus	177		97.75
KOG4579|consensus	177		97.63
KOG2982|consensus	418		97.54
KOG1644|consensus	233		97.5
KOG1644|consensus	233		97.43
PRK15386	426	type III secretion protein GogB; Provisional	97.27
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.18
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	96.83
KOG2123|consensus	388		96.75
KOG4658|consensus	889		96.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.56
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	96.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.34
KOG2123|consensus	388		96.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.18
KOG2120|consensus	419		95.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.86
smart00370	26	LRR Leucine-rich repeats, outliers.	95.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.31
KOG2739|consensus	260		95.24
KOG2982|consensus	418		95.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.93
KOG3665|consensus	699		94.78
KOG3665|consensus	699		94.35
KOG2739|consensus	260		94.35
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.27
smart00370	26	LRR Leucine-rich repeats, outliers.	94.27
KOG2120|consensus	419		94.11
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	93.23
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	92.66
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	91.85
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	87.33
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.59
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.07
KOG3864|consensus	221		83.32

>KOG4194|consensus

Probab=99.97  E-value=4.8e-33  Score=258.39  Aligned_cols=343  Identities=19%  Similarity=0.233  Sum_probs=209.5

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      +||+++|+|.++...-|.++++|+.+.+..|.++             ..|.++.-......+.+.+|.|.++......-.
T Consensus        82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-------------~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l  148 (873)
T KOG4194|consen   82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-------------RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL  148 (873)
T ss_pred             eeeccccccccCcHHHHhcCCcceeeeeccchhh-------------hcccccccccceeEEeeeccccccccHHHHHhH
Confidence            6999999999999999999999999999999987             667776666666677888888888776554322


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-CCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      ..                     .+.+|+|.|.++++|. .+|  .+++.|+|+.|.|+.+..+.|..+.+|..|.|++|
T Consensus       149 ~a---------------------lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  149 PA---------------------LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             hh---------------------hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            21                     2777777777777775 333  36777777777777777777777777777777777


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH  238 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (405)
                      +++.+++..|..++.|+.|++..|+|..+..-.|.++++|+.|.+..|.+..            .....+........+.
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k------------L~DG~Fy~l~kme~l~  275 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK------------LDDGAFYGLEKMEHLN  275 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc------------ccCcceeeecccceee
Confidence            7777777777777777777777777776655567777777777777776541            1111122222222333


Q ss_pred             CCCCcccccCCCcccccCccccccc-----------cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceee
Q psy12210        239 IKGQNILDIPEHEFKCSGSSMETRS-----------KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVD  307 (405)
Q Consensus       239 l~~~~l~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~  307 (405)
                      |..+.+..+...++.+.... ..+.           ..|..-..++-..++.++|+++++..+..+.       .|+.|.
T Consensus       276 L~~N~l~~vn~g~lfgLt~L-~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-------~Le~Ln  347 (873)
T KOG4194|consen  276 LETNRLQAVNEGWLFGLTSL-EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-------QLEELN  347 (873)
T ss_pred             cccchhhhhhcccccccchh-hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-------Hhhhhc
Confidence            33333333333332222100 0000           0011111222333444555555544443333       455555


Q ss_pred             cCCCCCCcCCCCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceee
Q psy12210        308 CREKGLNKVPILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIR  382 (405)
Q Consensus       308 l~~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~  382 (405)
                      +++|.+..+....|   ++|..|+|+ |.++..-...     ...|+++++ +.|+|.+|+|..|+..+|.+++.|++||
T Consensus       348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa-----a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA-----AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             ccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc-----hhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            55555555544443   355555666 6555432111     345666777 7777777777777777777777777777


Q ss_pred             cccCCCcccChhhcCCCccccC
Q psy12210        383 LEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       383 L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      |.+|.|.+|-+.+|..+ .|+.
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~  443 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKE  443 (873)
T ss_pred             CCCCcceeecccccccc-hhhh
Confidence            77777777766666665 4443

>KOG4237|consensus

Probab=99.97  E-value=5.6e-33  Score=247.09  Aligned_cols=293  Identities=38%  Similarity=0.671  Sum_probs=240.1

Q ss_pred             ccCCcccccCCCccccCCCCCC-CCCCCCC-CCCCCCCccccC---ceEEcCCCCccccCCCCCCCccEEEccCCCCCCC
Q psy12210         65 IKGQNILDIPEHEFKCSGPVEK-PTGECAA-EPSCPHPCRCAD---GIVDCREKGLNKVPILLPEATTELRLEQNDITEL  139 (405)
Q Consensus        65 l~~~~l~~l~~~~~~~~~~~~~-~~~~~~~-~~~~p~~~~c~~---~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l  139 (405)
                      +.+..+..+++..+.|.+.... ....|.. ...||..|+|..   ..++|++-+++++|.++|...+.++|..|.|+.|
T Consensus         3 lrG~~v~~l~~s~~~csg~~s~~~~~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~i   82 (498)
T KOG4237|consen    3 LRGLNVADLQKSEFVCSGLQSAWAVPTCAHSASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSI   82 (498)
T ss_pred             cccccccccccceeeecCchhhhhhhhhhhccccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccC
Confidence            3455566677777888777654 5566666 789999999998   9999999999999999999999999999999999


Q ss_pred             CcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC-CcCcccChhhhhcccCC--------------------
Q psy12210        140 PPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN-NNLTYLPDGVFAELFRL--------------------  198 (405)
Q Consensus       140 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~f~~l~~L--------------------  198 (405)
                      |+++|+.+++|+.|+|++|.|+.|.|++|.++.++..|-+-+ |+|++++.++|+++..|                    
T Consensus        83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d  162 (498)
T KOG4237|consen   83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD  162 (498)
T ss_pred             ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence            999999999999999999999999999999999888776544 88999988888777665                    


Q ss_pred             ----------------------------cEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCC
Q psy12210        199 ----------------------------RTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH  250 (405)
Q Consensus       199 ----------------------------~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~  250 (405)
                                                  +.+.+..|++.|+|+++|..++....+..+..+.|.++..+....+..+...
T Consensus       163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~  242 (498)
T KOG4237|consen  163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR  242 (498)
T ss_pred             hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh
Confidence                                        3444555667789999999999999999999999999999999999989888


Q ss_pred             cccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE
Q psy12210        251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM  330 (405)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~  330 (405)
                      .|.|...       .+.               +.+...++....||..|             ++.+     ++|++|+++
T Consensus       243 kf~c~~e-------sl~---------------s~~~~~d~~d~~cP~~c-------------f~~L-----~~L~~lnls  282 (498)
T KOG4237|consen  243 KFLCSLE-------SLP---------------SRLSSEDFPDSICPAKC-------------FKKL-----PNLRKLNLS  282 (498)
T ss_pred             hhhhhHH-------hHH---------------HhhccccCcCCcChHHH-------------Hhhc-----ccceEeccC
Confidence            8876521       111               22333333444444433             2222     588899999


Q ss_pred             -ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        331 -VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       331 -n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                       |+|+.|.        +.+|++... +.|+|..|+|..+..+.|.++..|+.|+|.+|+|+.+.+.+|..+..|++|
T Consensus       283 nN~i~~i~--------~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l  351 (498)
T KOG4237|consen  283 NNKITRIE--------DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL  351 (498)
T ss_pred             CCccchhh--------hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence             9999998        889999999 999999999999998899999999999999999999999889888877654

>KOG4237|consensus

Probab=99.97  E-value=1.6e-32  Score=244.12  Aligned_cols=327  Identities=30%  Similarity=0.580  Sum_probs=287.6

Q ss_pred             cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC-
Q psy12210          3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS-   81 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~-   81 (405)
                      |.+..|.++.+..++|..+..++.+++..|.+.++|.++|+.+.....+-...-..|..+..+.+..+..++...|.+. 
T Consensus       169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~  248 (498)
T KOG4237|consen  169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL  248 (498)
T ss_pred             hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence            6788999999999999999999999999999999999999999988877777777788888899999999999888876 


Q ss_pred             -CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcc
Q psy12210         82 -GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI  160 (405)
Q Consensus        82 -~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l  160 (405)
                       +......+++.....||..|             +..+     ++|+.|++++|+|+.|.+++|.+...+++|.+.+|++
T Consensus       249 esl~s~~~~~d~~d~~cP~~c-------------f~~L-----~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l  310 (498)
T KOG4237|consen  249 ESLPSRLSSEDFPDSICPAKC-------------FKKL-----PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL  310 (498)
T ss_pred             HhHHHhhccccCcCCcChHHH-------------Hhhc-----ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence             33333456666677777666             2223     4899999999999999999999999999999999999


Q ss_pred             eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210        161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK  240 (405)
Q Consensus       161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (405)
                      ..+....|.++.+|+.|++.+|+|+.+.+++|..+.+|..|.+-.|++.|+|.+.|+..|+.... ......|..|..+.
T Consensus       311 ~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~-~~~~~~Cq~p~~~~  389 (498)
T KOG4237|consen  311 EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS-VVGNPRCQSPGFVR  389 (498)
T ss_pred             HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC-CCCCCCCCCCchhc
Confidence            99999999999999999999999999999999999999999999999999999999999999988 77788899999999


Q ss_pred             CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC
Q psy12210        241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL  320 (405)
Q Consensus       241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~  320 (405)
                      +.++.++....|+|.+.+                           ...+...-.||..|.|--+++.+++..++.+|..+
T Consensus       390 ~~~~~dv~~~~~~c~~~e---------------------------e~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i  442 (498)
T KOG4237|consen  390 QIPISDVAFGDFRCGGPE---------------------------ELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI  442 (498)
T ss_pred             cccchhccccccccCCcc---------------------------ccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC
Confidence            999999999999887433                           23344566799999999999999999999999999


Q ss_pred             CCCceEEEEE-ecceeeeccchhccccccccCCccceEEecCCCCcccCcccccCCccCceeecccC
Q psy12210        321 PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQN  386 (405)
Q Consensus       321 ~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N  386 (405)
                      |.....|++. |.+..++        ...+..   -.+|+++|+|+.+.-..|.++.+|..|-|++|
T Consensus       443 P~d~telyl~gn~~~~vp--------~~~~~~---l~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  443 PVDVTELYLDGNAITSVP--------DELLRS---LLLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CchhHHHhcccchhcccC--------HHHHhh---hhcccccCceehhhcccccchhhhheeEEecC
Confidence            9999999999 9999998        332222   47899999999999888999999999999886

>KOG4194|consensus

Probab=99.96  E-value=2.4e-30  Score=240.46  Aligned_cols=316  Identities=21%  Similarity=0.268  Sum_probs=212.5

Q ss_pred             cccCCCcCccCCchhhcccc-ccceEEccCCcccccch--hhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccc
Q psy12210          3 RTLNNNNLTYLPDGVFAELF-RLRTLRISENSFICDCH--LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK   79 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~-~L~~L~l~~n~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~   79 (405)
                      +++.+|.++.||.  |++.. +|+.|+|.+|.|+....  +++++       .       ...++++.|.|.+++...|.
T Consensus       107 v~l~~N~Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~-------a-------lrslDLSrN~is~i~~~sfp  170 (873)
T KOG4194|consen  107 VNLNKNELTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALP-------A-------LRSLDLSRNLISEIPKPSFP  170 (873)
T ss_pred             eeeccchhhhccc--ccccccceeEEeeeccccccccHHHHHhHh-------h-------hhhhhhhhchhhcccCCCCC
Confidence            5677777777776  45444 47777777777764321  22221       1       23456677777777766553


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCC---CCccEEEccCCCCCCCCcccccCCCCCcEEecC
Q psy12210         80 CSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELRLEQNDITELPPKAFANYKRLRRIDLS  156 (405)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~---~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls  156 (405)
                      ....                     .+.++++.|.++.+-..-+   .+|.+|.|+.|+|+.+|.-+|.++++|+.|+|.
T Consensus       171 ~~~n---------------------i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  171 AKVN---------------------IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             CCCC---------------------ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            3211                     1667777777766654322   366667777777777777677777777777777


Q ss_pred             CCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-----chHHHH-------HHhhc
Q psy12210        157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-----LSWLHR-------WLKRY  224 (405)
Q Consensus       157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-----l~~~~~-------~~~~~  224 (405)
                      .|+|..+.--.|+++++|+.|.+..|.++.+..++|-.+.++++|++..|.+.....     +..+..       .-+-.
T Consensus       230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih  309 (873)
T KOG4194|consen  230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH  309 (873)
T ss_pred             ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence            777766655566677777777777777776666666666666666666666543211     111110       01122


Q ss_pred             CCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc
Q psy12210        225 PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG  304 (405)
Q Consensus       225 ~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~  304 (405)
                      ...|.....+..++|..+.+.++++..|.+.              ..++-..++.++|..+...+|..+.       +|+
T Consensus       310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L--------------~~Le~LnLs~Nsi~~l~e~af~~ls-------sL~  368 (873)
T KOG4194|consen  310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVL--------------SQLEELNLSHNSIDHLAEGAFVGLS-------SLH  368 (873)
T ss_pred             cchhhhcccceeEeccccccccCChhHHHHH--------------HHhhhhcccccchHHHHhhHHHHhh-------hhh
Confidence            2333444455566677777777777766554              3344566888899999988887776       899


Q ss_pred             eeecCCCCCCcCCCC---C---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210        305 IVDCREKGLNKVPIL---L---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK  376 (405)
Q Consensus       305 ~l~l~~n~l~~~p~~---~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~  376 (405)
                      .||++.|.+.-.-+.   .   .+.|+.|.+. |+++.|+        ...|++++. ++|||.+|.|.+|.+.+|..+ 
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~--------krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-  439 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP--------KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-  439 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc--------hhhhccCcccceecCCCCcceeecccccccc-
Confidence            999999999753221   1   3688999999 9999999        889999999 999999999999999999998 


Q ss_pred             cCceeeccc
Q psy12210        377 RLRRIRLEQ  385 (405)
Q Consensus       377 ~L~~L~L~~  385 (405)
                      .|+.|.+..
T Consensus       440 ~Lk~Lv~nS  448 (873)
T KOG4194|consen  440 ELKELVMNS  448 (873)
T ss_pred             hhhhhhhcc
Confidence            899888764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=4.9e-24  Score=227.13  Aligned_cols=96  Identities=18%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             cCceeecCCCCCCcC-CCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210        302 ADGIVDCREKGLNKV-PILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK  376 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~-p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~  376 (405)
                      +++.|++++|+++.. |..+  .+.++.|+++ |.+.+..        +..+..+++ ++|+|++|.++...+..|..++
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  547 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEI--------PDELSSCKKLVSLDLSHNQLSGQIPASFSEMP  547 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeC--------ChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence            588888888888754 3322  3577888888 8888665        677888888 9999999999988888899999


Q ss_pred             cCceeecccCCCcccChhhcCCCccccCC
Q psy12210        377 RLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       377 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +|+.|+|++|++++..+..+.+++.|++|
T Consensus       548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             cCCEEECCCCcccccCChhHhcCcccCEE
Confidence            99999999999887666667777777653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=2.6e-23  Score=221.58  Aligned_cols=351  Identities=16%  Similarity=0.079  Sum_probs=195.4

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCccccc-CCCcccc
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDI-PEHEFKC   80 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l-~~~~~~~   80 (405)
                      .|+|++|++++..|..|+++++|+.|++++|.+++..+..+     ..       ....+.+.+++|.+... +......
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~-------l~~L~~L~L~~n~l~~~~p~~l~~l  283 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-----GN-------LKNLQYLFLYQNKLSGPIPPSIFSL  283 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-----hC-------CCCCCEEECcCCeeeccCchhHhhc
Confidence            57899999998777788999999999999998875332111     11       11223344555555432 2111111


Q ss_pred             CCCCCCCCCCCCCCCCCCC-Cccc-cCceEEcCCCCccc-cCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEec
Q psy12210         81 SGPVEKPTGECAAEPSCPH-PCRC-ADGIVDCREKGLNK-VPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDL  155 (405)
Q Consensus        81 ~~~~~~~~~~~~~~~~~p~-~~~c-~~~~l~~~~n~l~~-lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~l  155 (405)
                      .......+.++.....-|. ...+ .++.+++++|.++. +|..+  .++|+.|++++|.++...+..++++.+|+.|++
T Consensus       284 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L  363 (968)
T PLN00113        284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL  363 (968)
T ss_pred             cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence            1222222222222211221 1112 23667777766643 33332  246677777777776555555666777777777


Q ss_pred             CCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCC
Q psy12210        156 SKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFA  235 (405)
Q Consensus       156 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  235 (405)
                      ++|.+....|.++..+++|+.|++++|.+....+..+..+++|+.|++++|.+...-            +..+.....+.
T Consensus       364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~------------p~~~~~l~~L~  431 (968)
T PLN00113        364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL------------PSEFTKLPLVY  431 (968)
T ss_pred             CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC------------ChhHhcCCCCC
Confidence            777776666666666666677777666666555555666667777777666654210            00001111111


Q ss_pred             CCCCCCCcccccCCCcccccCc-ccccc--------ccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcee
Q psy12210        236 PSHIKGQNILDIPEHEFKCSGS-SMETR--------SKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIV  306 (405)
Q Consensus       236 ~~~l~~~~l~~l~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l  306 (405)
                      ...+.++.+.......+...+. ....+        ..............++.+++.......+..+.       +|+.|
T Consensus       432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~-------~L~~L  504 (968)
T PLN00113        432 FLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS-------ELMQL  504 (968)
T ss_pred             EEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh-------ccCEE
Confidence            1222222222111110000000 00000        00000011223334555555544433333333       68899


Q ss_pred             ecCCCCCCcC-CCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCcee
Q psy12210        307 DCREKGLNKV-PILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRI  381 (405)
Q Consensus       307 ~l~~n~l~~~-p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L  381 (405)
                      ++++|++... |..+  .++|+.|+++ |.+.+..        +..|.++++ +.|+|++|+++...+..+.++++|+.|
T Consensus       505 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l  576 (968)
T PLN00113        505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI--------PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV  576 (968)
T ss_pred             ECcCCcceeeCChHHcCccCCCEEECCCCcccccC--------ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence            9999988754 4333  3688899999 9988776        678889999 999999999987666778888999999


Q ss_pred             ecccCCCccc
Q psy12210        382 RLEQNDITEL  391 (405)
Q Consensus       382 ~L~~N~l~~i  391 (405)
                      ++++|++.+.
T Consensus       577 ~ls~N~l~~~  586 (968)
T PLN00113        577 NISHNHLHGS  586 (968)
T ss_pred             eccCCcceee
Confidence            9999998753

>KOG0472|consensus

Probab=99.87  E-value=6.4e-25  Score=196.29  Aligned_cols=144  Identities=24%  Similarity=0.301  Sum_probs=96.4

Q ss_pred             CcccCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCcc-ccCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCC
Q psy12210         63 SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCR-CADGIVDCREKGLNKVPILLP--EATTELRLEQNDITEL  139 (405)
Q Consensus        63 ~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-c~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l  139 (405)
                      ....+|+++.+++..+.+.........+.......|..-. =+++.+||-.|-++.+|+.+.  .++..||++.|+|..+
T Consensus       142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~l  221 (565)
T KOG0472|consen  142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFL  221 (565)
T ss_pred             hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccC
Confidence            3445566666666555444433333333333333332222 224788888888888887764  5777788888888887


Q ss_pred             CcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        140 PPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       140 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      |  .|+++..|++++++.|+|+.++.+-...+.++..||+.+|+++++|.++ ..+.+|+.||+++|.++
T Consensus       222 P--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  222 P--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNNDIS  288 (565)
T ss_pred             C--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH-HHhhhhhhhcccCCccc
Confidence            7  4778888888888888887777666667777778888888888777654 45777777888777765

>KOG0444|consensus

Probab=99.86  E-value=3.9e-24  Score=200.95  Aligned_cols=296  Identities=20%  Similarity=0.275  Sum_probs=176.5

Q ss_pred             cccCCCcCc-cCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          3 RTLNNNNLT-YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         3 L~l~~n~i~-~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+++|.++ .--|.....|++++.|.|...++.      .++..+.....       +..+.+.+|++..+...--...
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~------~vPeEL~~lqk-------LEHLs~~HN~L~~vhGELs~Lp   78 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE------QVPEELSRLQK-------LEHLSMAHNQLISVHGELSDLP   78 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh------hChHHHHHHhh-------hhhhhhhhhhhHhhhhhhccch
Confidence            467777777 333444577777777777766553      22222211111       1223444555544433211000


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcc--ccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN--KVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSK  157 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~--~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~  157 (405)
                                            .++.+....|++.  .+|.+++  ..|++|+|++|+++..|.+ +...+++-.|++|+
T Consensus        79 ----------------------~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~  135 (1255)
T KOG0444|consen   79 ----------------------RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSY  135 (1255)
T ss_pred             ----------------------hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh-hhhhcCcEEEEccc
Confidence                                  0144555555553  3565554  4566777777777766653 55666677777777


Q ss_pred             CcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210        158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS  237 (405)
Q Consensus       158 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (405)
                      |+|.+|+...|.+++.|-.||+++|++..+||.. ..+..|+.|.+++|++.      .++  ++..    .....++.+
T Consensus       136 N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~LqtL~Ls~NPL~------hfQ--LrQL----PsmtsL~vL  202 (1255)
T KOG0444|consen  136 NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSMLQTLKLSNNPLN------HFQ--LRQL----PSMTSLSVL  202 (1255)
T ss_pred             CccccCCchHHHhhHhHhhhccccchhhhcCHHH-HHHhhhhhhhcCCChhh------HHH--HhcC----ccchhhhhh
Confidence            7777777666677777777777777777777753 55677777777777643      000  0000    001111111


Q ss_pred             CCCCC--cccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc
Q psy12210        238 HIKGQ--NILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK  315 (405)
Q Consensus       238 ~l~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~  315 (405)
                      .+.+.  .+..++...                                              ....+|..+|++.|++..
T Consensus       203 hms~TqRTl~N~Ptsl----------------------------------------------d~l~NL~dvDlS~N~Lp~  236 (1255)
T KOG0444|consen  203 HMSNTQRTLDNIPTSL----------------------------------------------DDLHNLRDVDLSENNLPI  236 (1255)
T ss_pred             hcccccchhhcCCCch----------------------------------------------hhhhhhhhccccccCCCc
Confidence            11111  112222111                                              011157888999999988


Q ss_pred             CCCCCC--CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCC--Cc
Q psy12210        316 VPILLP--EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND--IT  389 (405)
Q Consensus       316 ~p~~~~--~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~--l~  389 (405)
                      +|..++  ++|+.|+++ |+|+.+.         .....+.+ ++|+|+.|+++.+|. ++.++++|+.|++.+|+  +.
T Consensus       237 vPecly~l~~LrrLNLS~N~iteL~---------~~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~Fe  306 (1255)
T KOG0444|consen  237 VPECLYKLRNLRRLNLSGNKITELN---------MTEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFE  306 (1255)
T ss_pred             chHHHhhhhhhheeccCcCceeeee---------ccHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCccccc
Confidence            887765  688899999 9998887         55667778 889999999998885 47778899999998888  55


Q ss_pred             ccChhhcCCCccccC
Q psy12210        390 ELPPKAFANYKRLRR  404 (405)
Q Consensus       390 ~i~~~~f~~l~~L~~  404 (405)
                      +||++ ++.|.+|++
T Consensus       307 GiPSG-IGKL~~Lev  320 (1255)
T KOG0444|consen  307 GIPSG-IGKLIQLEV  320 (1255)
T ss_pred             CCccc-hhhhhhhHH
Confidence            77765 677776654

>KOG0472|consensus

Probab=99.85  E-value=9.4e-24  Score=188.85  Aligned_cols=379  Identities=19%  Similarity=0.209  Sum_probs=228.5

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHH----------HhhCCCccccccccCCCcccCCccc
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW----------LKRYPRLGLYTKCFAPSHIKGQNIL   71 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~~~~l~   71 (405)
                      .|++++|++..+|+. ...+.+|+.++.++|.+....+-..-...          ....|....+........+.+++++
T Consensus        95 ~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~  173 (565)
T KOG0472|consen   95 SLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK  173 (565)
T ss_pred             HhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence            578888888888875 57788888888888887653321111100          1112222222333445678889999


Q ss_pred             ccCCCccccCCCCCCCCCCCCCCCCCCCCccc-cCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCC
Q psy12210         72 DIPEHEFKCSGPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYK  148 (405)
Q Consensus        72 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c-~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~  148 (405)
                      .++.+...+..........+......|+.+.= .+..+++..|++..+| .++  +.++.|+++.|.|+-++.+....+.
T Consensus       174 ~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~  252 (565)
T KOG0472|consen  174 ALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLN  252 (565)
T ss_pred             hCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccc
Confidence            98887666555555555555555556655543 3477889999999999 565  5789999999999999998778999


Q ss_pred             CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcccc------ccC----chHHH
Q psy12210        149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC------DCH----LSWLH  218 (405)
Q Consensus       149 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~------~~~----l~~~~  218 (405)
                      ++..||+..|+++.++ +...-+.+|.+||+++|.|+++|.. ++.+ .|+.|.+.||++.-      .|.    +|++.
T Consensus       253 ~l~vLDLRdNklke~P-de~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr  329 (565)
T KOG0472|consen  253 SLLVLDLRDNKLKEVP-DEICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR  329 (565)
T ss_pred             cceeeeccccccccCc-hHHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH
Confidence            9999999999999997 5577789999999999999999985 6888 99999999999652      122    34444


Q ss_pred             HHHhhcCCCCC----------------c---cccCCCCCCCCCcccccCCCcccccCccccc-cccceecccccC-----
Q psy12210        219 RWLKRYPRLGL----------------Y---TKCFAPSHIKGQNILDIPEHEFKCSGSSMET-RSKIYREECSTD-----  273 (405)
Q Consensus       219 ~~~~~~~~~~~----------------~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-----  273 (405)
                      ...........                +   ......+.+.+.+++.++..-|......... ....-.+.|+..     
T Consensus       330 s~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~  409 (565)
T KOG0472|consen  330 SKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE  409 (565)
T ss_pred             HhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence            32111110000                0   0012223444555555555444322100000 000000000000     


Q ss_pred             -----CCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC--CCceEEEEE-ecceeee--------
Q psy12210        274 -----FHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP--EATTELTYM-VSIDRVD--------  337 (405)
Q Consensus       274 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~i~~i~--------  337 (405)
                           -.-+....+..+.+.....+.       ++..|++++|.+..+|...+  ..++.|+++ |++..+|        
T Consensus       410 lkelvT~l~lsnn~isfv~~~l~~l~-------kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~  482 (565)
T KOG0472|consen  410 LKELVTDLVLSNNKISFVPLELSQLQ-------KLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQT  482 (565)
T ss_pred             HHHHHHHHHhhcCccccchHHHHhhh-------cceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHH
Confidence                 000000111111111111111       45666666666666665543  246666666 6555544        


Q ss_pred             -------ccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210        338 -------KVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK  394 (405)
Q Consensus       338 -------~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~  394 (405)
                             ..-.....++.+.++.+ ..|||.+|.|..||+. +++|.+|++|+|.+|.|+ .|.+
T Consensus       483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC-CCHH
Confidence                   00011111455777777 8888888888888875 778888888888888887 5543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=2.8e-20  Score=186.65  Aligned_cols=261  Identities=21%  Similarity=0.262  Sum_probs=183.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+.+|+. +.  ++|+.|++++|+++.             +|..   ...+..+++++|+++.++... .  
T Consensus       205 ~LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~-------------LP~l---p~~Lk~LdLs~N~LtsLP~lp-~--  262 (788)
T PRK15387        205 VLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTS-------------LPAL---PPELRTLEVSGNQLTSLPVLP-P--  262 (788)
T ss_pred             EEEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCC-------------CCCC---CCCCcEEEecCCccCcccCcc-c--
Confidence            589999999999885 32  479999999999872             2221   123456777888888776421 1  


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                                            .++.+++++|.++.+|. ++..|+.|++++|.++.++.    ..++|+.|++++|.++
T Consensus       263 ----------------------sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~  315 (788)
T PRK15387        263 ----------------------GLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLA  315 (788)
T ss_pred             ----------------------ccceeeccCCchhhhhh-chhhcCEEECcCCccccccc----cccccceeECCCCccc
Confidence                                  12778888888888886 55678888888888888775    2357888888888888


Q ss_pred             eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210        162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG  241 (405)
Q Consensus       162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (405)
                      .++.    ...+|+.|++++|.++.+|.  +  ..+|+.|++++|.+...             +...   ..+..+.+.+
T Consensus       316 ~Lp~----lp~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~L-------------P~lp---~~L~~L~Ls~  371 (788)
T PRK15387        316 SLPA----LPSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASL-------------PTLP---SELYKLWAYN  371 (788)
T ss_pred             cCCC----CcccccccccccCccccccc--c--ccccceEecCCCccCCC-------------CCCC---cccceehhhc
Confidence            7753    12467788888888888774  1  25788888888876510             0000   0011111111


Q ss_pred             CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210        242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP  321 (405)
Q Consensus       242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~  321 (405)
                                                            +.+..++..           ..+|+.|++++|+|+.+|. .+
T Consensus       372 --------------------------------------N~L~~LP~l-----------~~~L~~LdLs~N~Lt~LP~-l~  401 (788)
T PRK15387        372 --------------------------------------NRLTSLPAL-----------PSGLKELIVSGNRLTSLPV-LP  401 (788)
T ss_pred             --------------------------------------cccccCccc-----------ccccceEEecCCcccCCCC-cc
Confidence                                                  222221110           0258999999999999885 45


Q ss_pred             CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCC
Q psy12210        322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN  398 (405)
Q Consensus       322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~  398 (405)
                      +.++.|+++ |.++.+|        . .   ..+ +.|++++|+|+.+|.. +.++++|+.|+|++|.|++..+..+..
T Consensus       402 s~L~~LdLS~N~LssIP--------~-l---~~~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        402 SELKELMVSGNRLTSLP--------M-L---PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             cCCCEEEccCCcCCCCC--------c-c---hhhhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCchHHHHHHH
Confidence            789999999 9999988        2 2   245 8899999999999865 788999999999999999877665533

>KOG0444|consensus

Probab=99.82  E-value=9.5e-23  Score=191.71  Aligned_cols=318  Identities=20%  Similarity=0.263  Sum_probs=199.3

Q ss_pred             cccCCCcCccCCchhhccccccceEEccCCcccccch-hhHHHHHHhhCCCccccccccCCCcccCCccc--ccCCCccc
Q psy12210          3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL--DIPEHEFK   79 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~l~~~~~~   79 (405)
                      |.|...++..+|. .++.+.+|.+|.+++|+++..-+ ++-+              .++..+.+..|+++  .+|.+.|.
T Consensus        37 LkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~~vhGELs~L--------------p~LRsv~~R~N~LKnsGiP~diF~  101 (1255)
T KOG0444|consen   37 LKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLISVHGELSDL--------------PRLRSVIVRDNNLKNSGIPTDIFR  101 (1255)
T ss_pred             EEechhhhhhChH-HHHHHhhhhhhhhhhhhhHhhhhhhccc--------------hhhHHHhhhccccccCCCCchhcc
Confidence            4567778888776 47899999999999998763211 1111              11222333334443  46666664


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCC
Q psy12210         80 CSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSK  157 (405)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~  157 (405)
                      ...                      ++++|+|+|+++++|..+  .++.-+|+|++|.|..||...|-++..|-.|++|+
T Consensus       102 l~d----------------------Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen  102 LKD----------------------LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             ccc----------------------ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            332                      278888888888888776  46778888888888888888888888888888888


Q ss_pred             CcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210        158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS  237 (405)
Q Consensus       158 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (405)
                      |++..++|. .+.+.+|+.|.+++|.+....-..+..|++|+.|.+++..-+           +...+....+..++...
T Consensus       160 NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-----------l~N~Ptsld~l~NL~dv  227 (1255)
T KOG0444|consen  160 NRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-----------LDNIPTSLDDLHNLRDV  227 (1255)
T ss_pred             chhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----------hhcCCCchhhhhhhhhc
Confidence            888888764 677888888888888777665444555677777777765422           11122222222333344


Q ss_pred             CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210        238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP  317 (405)
Q Consensus       238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p  317 (405)
                      ++..+++..++...+.-               ..+.-..++.+.|+.+....- .+.       ++++|++++|+++.+|
T Consensus       228 DlS~N~Lp~vPecly~l---------------~~LrrLNLS~N~iteL~~~~~-~W~-------~lEtLNlSrNQLt~LP  284 (1255)
T KOG0444|consen  228 DLSENNLPIVPECLYKL---------------RNLRRLNLSGNKITELNMTEG-EWE-------NLETLNLSRNQLTVLP  284 (1255)
T ss_pred             cccccCCCcchHHHhhh---------------hhhheeccCcCceeeeeccHH-HHh-------hhhhhccccchhccch
Confidence            44444444444433211               111122233333333322111 111       5888888888888888


Q ss_pred             CCC--CCCceEEEEE-ecce--eeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCccc
Q psy12210        318 ILL--PEATTELTYM-VSID--RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITEL  391 (405)
Q Consensus       318 ~~~--~~~l~~L~l~-n~i~--~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i  391 (405)
                      ..+  .+.|+.|++. |++.  +||         +.++.+.. +++..++|.+.-+|.+ +.+|+.|+.|.|++|++.++
T Consensus       285 ~avcKL~kL~kLy~n~NkL~FeGiP---------SGIGKL~~Levf~aanN~LElVPEg-lcRC~kL~kL~L~~NrLiTL  354 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNNKLTFEGIP---------SGIGKLIQLEVFHAANNKLELVPEG-LCRCVKLQKLKLDHNRLITL  354 (1255)
T ss_pred             HHHhhhHHHHHHHhccCcccccCCc---------cchhhhhhhHHHHhhccccccCchh-hhhhHHHHHhcccccceeec
Confidence            665  3567777777 6643  555         56677777 7777777777766654 67777888888888887777


Q ss_pred             ChhhcCCCcccc
Q psy12210        392 PPKAFANYKRLR  403 (405)
Q Consensus       392 ~~~~f~~l~~L~  403 (405)
                      |.. +--|+.|.
T Consensus       355 Pea-IHlL~~l~  365 (1255)
T KOG0444|consen  355 PEA-IHLLPDLK  365 (1255)
T ss_pred             hhh-hhhcCCcc
Confidence            753 33344433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.9e-18  Score=174.49  Aligned_cols=202  Identities=21%  Similarity=0.317  Sum_probs=120.1

Q ss_pred             ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc
Q psy12210        106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT  185 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  185 (405)
                      +.+++++|+++++|..++.+++.|++++|.++.+|.. +.  .+|+.|++++|.++.++. .+.  .+|+.|++++|+++
T Consensus       223 ~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP~-~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        223 KTLYANSNQLTSIPATLPDTIQEMELSINRITELPER-LP--SALQSLDLFHNKISCLPE-NLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CEEECCCCccccCChhhhccccEEECcCCccCcCChh-Hh--CCCCEEECcCCccCcccc-ccC--CCCcEEECCCCccc
Confidence            5566666666666665555666666666666665543 22  356666666666665532 222  35666666666666


Q ss_pred             ccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccc
Q psy12210        186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI  265 (405)
Q Consensus       186 ~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~  265 (405)
                      .++...   .++|+.|++++|.+...             +...  ...+..+.+.++.+..++....             
T Consensus       297 ~LP~~l---p~sL~~L~Ls~N~Lt~L-------------P~~l--~~sL~~L~Ls~N~Lt~LP~~l~-------------  345 (754)
T PRK15370        297 TLPAHL---PSGITHLNVQSNSLTAL-------------PETL--PPGLKTLEAGENALTSLPASLP-------------  345 (754)
T ss_pred             cCcccc---hhhHHHHHhcCCccccC-------------Cccc--cccceeccccCCccccCChhhc-------------
Confidence            655432   13455666666554310             0000  0001111111111111111000             


Q ss_pred             eecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhcc
Q psy12210        266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSY  344 (405)
Q Consensus       266 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~  344 (405)
                                                         .+|+.|++++|+++.+|..+++.|+.|+++ |.+..+|       
T Consensus       346 -----------------------------------~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP-------  383 (754)
T PRK15370        346 -----------------------------------PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLP-------  383 (754)
T ss_pred             -----------------------------------CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCC-------
Confidence                                               158999999999999998888899999999 9999888       


Q ss_pred             ccccccCCcc-ceEEecCCCCcccCcc---cccCCccCceeecccCCCcc
Q psy12210        345 ISNNFKRWTN-RSRRLEQNDITELPPK---AFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       345 ~~~~~~~l~~-~~L~L~~N~i~~i~~~---~~~~l~~L~~L~L~~N~l~~  390 (405)
                       +. +.  .. +.|++++|+|+.+|..   .+..++.+..|+|.+|.++.
T Consensus       384 -~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        384 -EN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             -Hh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence             32 21  35 8899999999988753   23445888999999999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=3.3e-18  Score=172.78  Aligned_cols=246  Identities=21%  Similarity=0.231  Sum_probs=168.5

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++++++++|...   .++|+.|++++|+|+.             +|....  .....+++++|.++.++.....  
T Consensus       182 ~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~Lts-------------LP~~l~--~nL~~L~Ls~N~LtsLP~~l~~--  241 (754)
T PRK15370        182 ELRLKILGLTTIPACI---PEQITTLILDNNELKS-------------LPENLQ--GNIKTLYANSNQLTSIPATLPD--  241 (754)
T ss_pred             EEEeCCCCcCcCCccc---ccCCcEEEecCCCCCc-------------CChhhc--cCCCEEECCCCccccCChhhhc--
Confidence            4788889999888642   3578999999998873             221111  1345567777777777653321  


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                                            .++.+++++|.++.+|..++++|+.|++++|.++.+|.. +.  .+|+.|++++|.++
T Consensus       242 ----------------------~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        242 ----------------------TIQEMELSINRITELPERLPSALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNSIR  296 (754)
T ss_pred             ----------------------cccEEECcCCccCcCChhHhCCCCEEECcCCccCccccc-cC--CCCcEEECCCCccc
Confidence                                  127888888888888888888888888888888887753 32  47888888888888


Q ss_pred             eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210        162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG  241 (405)
Q Consensus       162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (405)
                      .++.. +.  .+|+.|++++|.++.++...   .++|+.|++++|.+.+.      +..+         ...+..+.+.+
T Consensus       297 ~LP~~-lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~L------P~~l---------~~sL~~L~Ls~  355 (754)
T PRK15370        297 TLPAH-LP--SGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSL------PASL---------PPELQVLDVSK  355 (754)
T ss_pred             cCccc-ch--hhHHHHHhcCCccccCCccc---cccceeccccCCccccC------Chhh---------cCcccEEECCC
Confidence            77532 32  46888888888888887543   35788888888876521      0000         01122223333


Q ss_pred             CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210        242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP  321 (405)
Q Consensus       242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~  321 (405)
                      +.+..++....                                                .+|+.|++++|.++.+|..++
T Consensus       356 N~L~~LP~~lp------------------------------------------------~~L~~LdLs~N~Lt~LP~~l~  387 (754)
T PRK15370        356 NQITVLPETLP------------------------------------------------PTITTLDVSRNALTNLPENLP  387 (754)
T ss_pred             CCCCcCChhhc------------------------------------------------CCcCEEECCCCcCCCCCHhHH
Confidence            33332222100                                                158999999999999998888


Q ss_pred             CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcc
Q psy12210        322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITE  366 (405)
Q Consensus       322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~  366 (405)
                      ..++.|+++ |++..+|...     +..++..+. ..+++.+|.++.
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl-----~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESL-----PHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHHhhccCCcccCchhH-----HHHhhcCCCccEEEeeCCCccH
Confidence            889999999 9999887221     234455677 899999999873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=1.6e-17  Score=167.02  Aligned_cols=238  Identities=22%  Similarity=0.297  Sum_probs=165.6

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|+|+.+|.    .+++|+.|++++|+|+.             .|..   ......+.+..|.+..++... .  
T Consensus       226 ~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts-------------LP~l---p~sL~~L~Ls~N~L~~Lp~lp-~--  282 (788)
T PRK15387        226 TLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS-------------LPVL---PPGLLELSIFSNPLTHLPALP-S--  282 (788)
T ss_pred             EEEccCCcCCCCCC----CCCCCcEEEecCCccCc-------------ccCc---ccccceeeccCCchhhhhhch-h--
Confidence            57899999999886    36899999999999973             2211   122345667777777776421 1  


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                                            .++.+++++|+++.+|. .+++|+.|++++|.++.++..    ...|+.|++++|.++
T Consensus       283 ----------------------~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        283 ----------------------GLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLT  335 (788)
T ss_pred             ----------------------hcCEEECcCCccccccc-cccccceeECCCCccccCCCC----cccccccccccCccc
Confidence                                  12678888888888886 346788899999988887652    235778888888888


Q ss_pred             eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210        162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG  241 (405)
Q Consensus       162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (405)
                      .++.  +  ..+|+.|++++|+++.+|..    ..+|+.|++++|.+...             +..   ...+....+.+
T Consensus       336 ~LP~--l--p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~L-------------P~l---~~~L~~LdLs~  391 (788)
T PRK15387        336 SLPT--L--PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSL-------------PAL---PSGLKELIVSG  391 (788)
T ss_pred             cccc--c--ccccceEecCCCccCCCCCC----CcccceehhhccccccC-------------ccc---ccccceEEecC
Confidence            7653  2  25788888888888888752    35677888888876510             000   00111222222


Q ss_pred             CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210        242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP  321 (405)
Q Consensus       242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~  321 (405)
                      +.+..++..                                                 ...++.|++++|+++.+|. .+
T Consensus       392 N~Lt~LP~l-------------------------------------------------~s~L~~LdLS~N~LssIP~-l~  421 (788)
T PRK15387        392 NRLTSLPVL-------------------------------------------------PSELKELMVSGNRLTSLPM-LP  421 (788)
T ss_pred             CcccCCCCc-------------------------------------------------ccCCCEEEccCCcCCCCCc-ch
Confidence            222222210                                                 0158899999999999985 45


Q ss_pred             CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccc
Q psy12210        322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAF  372 (405)
Q Consensus       322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~  372 (405)
                      ..++.|+++ |.++.+|         ..+..+++ +.|+|++|+|+...+..+
T Consensus       422 ~~L~~L~Ls~NqLt~LP---------~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        422 SGLLSLSVYRNQLTRLP---------ESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             hhhhhhhhccCcccccC---------hHHhhccCCCeEECCCCCCCchHHHHH
Confidence            688999999 9999988         66888999 999999999997665544

>KOG0618|consensus

Probab=99.70  E-value=5.6e-19  Score=173.26  Aligned_cols=241  Identities=20%  Similarity=0.260  Sum_probs=163.1

Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEe--------------------cCCCcceeecccccCCCCCCCEEEccCCcCccc
Q psy12210        128 ELRLEQNDITELPPKAFANYKRLRRID--------------------LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL  187 (405)
Q Consensus       128 ~L~L~~n~i~~l~~~~~~~l~~L~~L~--------------------ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l  187 (405)
                      .|+|++|.+....   ...+.+|+.+.                    .++|.++...+.  ....+|++++++.|+++.+
T Consensus       182 ~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~l  256 (1081)
T KOG0618|consen  182 QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNL  256 (1081)
T ss_pred             eeecccchhhhhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhcc
Confidence            3788888777222   33444444444                    444444433322  2346899999999999999


Q ss_pred             ChhhhhcccCCcEEEeecCcccccc-------CchHHH---HHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCc
Q psy12210        188 PDGVFAELFRLRTLRISENSFICDC-------HLSWLH---RWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGS  257 (405)
Q Consensus       188 ~~~~f~~l~~L~~L~l~~N~l~~~~-------~l~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~  257 (405)
                      + +|...+.+|+.++...|.+.+..       .++.+.   .-+...+.......++..+++..+++..++...+.-...
T Consensus       257 p-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  257 P-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             h-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhH
Confidence            9 78899999999999999874211       111111   123344444455777888888888888888855533221


Q ss_pred             cccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC--CCC-CCCCceEEEEE-ecc
Q psy12210        258 SMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PIL-LPEATTELTYM-VSI  333 (405)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~--p~~-~~~~l~~L~l~-n~i  333 (405)
                      .             ..+...+.+++..++       ...+.-+|.|+.|.+.+|.++.-  |.. -++.|+.|+++ |++
T Consensus       336 ~-------------l~~ln~s~n~l~~lp-------~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  336 S-------------LNTLNVSSNKLSTLP-------SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             H-------------HHHHhhhhccccccc-------cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            1             111222222222222       11223346788999999999863  322 25789999999 999


Q ss_pred             eeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        334 DRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       334 ~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      ..+|        ...+.++.. +.|+|++|+++.++.. ..+++.|+.|...+|+|...|  .+..++.|+++
T Consensus       396 ~~fp--------as~~~kle~LeeL~LSGNkL~~Lp~t-va~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~l  457 (1081)
T KOG0618|consen  396 NSFP--------ASKLRKLEELEELNLSGNKLTTLPDT-VANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVL  457 (1081)
T ss_pred             ccCC--------HHHHhchHHhHHHhcccchhhhhhHH-HHhhhhhHHHhhcCCceeech--hhhhcCcceEE
Confidence            9999        788999999 9999999999999954 788999999999999999998  37788777653

>KOG0618|consensus

Probab=99.63  E-value=9.4e-18  Score=164.79  Aligned_cols=101  Identities=22%  Similarity=0.354  Sum_probs=86.1

Q ss_pred             ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      +.++.++|.++..-. -.|++++++++++|+++.+| ..++.+.+|+.+++.+|++..++ ......++|+.|++..|.+
T Consensus       222 ~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp-~ri~~~~~L~~l~~~~nel  299 (1081)
T KOG0618|consen  222 TALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALP-LRISRITSLVSLSAAYNEL  299 (1081)
T ss_pred             heeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhH-HHHhhhhhHHHHHhhhhhh
Confidence            788888888875544 34789999999999999999 56899999999999999997776 4466788999999999999


Q ss_pred             cccChhhhhcccCCcEEEeecCccc
Q psy12210        185 TYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       185 ~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      +.+++. ..++.+|+.|++..|.+.
T Consensus       300 ~yip~~-le~~~sL~tLdL~~N~L~  323 (1081)
T KOG0618|consen  300 EYIPPF-LEGLKSLRTLDLQSNNLP  323 (1081)
T ss_pred             hhCCCc-ccccceeeeeeehhcccc
Confidence            999983 466899999999999875

>PLN03210 Resistant to P

Probab=99.59  E-value=6.7e-14  Score=150.57  Aligned_cols=172  Identities=16%  Similarity=0.156  Sum_probs=102.9

Q ss_pred             cccCCCcCccCCchhhccccccceEEccCCcccccchhhH-HHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSW-LHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      |+++.-.-..+...+|.+|.+|+.|.+.++.+.......+ ++..+..+      ......+.+.++.+..+|.....  
T Consensus       539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l------p~~Lr~L~~~~~~l~~lP~~f~~--  610 (1153)
T PLN03210        539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL------PPKLRLLRWDKYPLRCMPSNFRP--  610 (1153)
T ss_pred             eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc------CcccEEEEecCCCCCCCCCcCCc--
Confidence            3444333335677889999999999997765421100000 00000000      11122234444555555433210  


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCC-CCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQND-ITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                                           ..++.+++.++.+..+|..+  .++|+.|+++++. ++.++.  ++.+++|+.|++++|
T Consensus       611 ---------------------~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        611 ---------------------ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC  667 (1153)
T ss_pred             ---------------------cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence                                 11377888888888777654  3578888887654 555553  677788888888877


Q ss_pred             cceeecccccCCCCCCCEEEccCCc-CcccChhhhhcccCCcEEEeecCc
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNN-LTYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      ......|..+..+++|+.|++++|. +..+|...  .+++|+.|++++|.
T Consensus       668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence            5444445667788888888888764 77777643  57788888887764

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.52  E-value=3.5e-13  Score=145.11  Aligned_cols=77  Identities=14%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             cCceeecCCC-CCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecC-CCCcccCcccccCCcc
Q psy12210        302 ADGIVDCREK-GLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQ-NDITELPPKAFANYKR  377 (405)
Q Consensus       302 ~l~~l~l~~n-~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~-N~i~~i~~~~~~~l~~  377 (405)
                      +|+.|++++| .++.+| ..+.+++.|+++ |.|+.+|         .++..+++ +.|+|++ +++..++.. ...+++
T Consensus       826 sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n~i~~iP---------~si~~l~~L~~L~L~~C~~L~~l~~~-~~~L~~  894 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFP-DISTNISDLNLSRTGIEEVP---------WWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKH  894 (1153)
T ss_pred             ccCEEECCCCCcccccc-ccccccCEeECCCCCCccCh---------HHHhcCCCCCEEECCCCCCcCccCcc-cccccC
Confidence            4777888776 444444 335678888888 8888777         56777888 8888887 477777764 566778


Q ss_pred             CceeecccCC-Cc
Q psy12210        378 LRRIRLEQND-IT  389 (405)
Q Consensus       378 L~~L~L~~N~-l~  389 (405)
                      |+.+++++|. |+
T Consensus       895 L~~L~l~~C~~L~  907 (1153)
T PLN03210        895 LETVDFSDCGALT  907 (1153)
T ss_pred             CCeeecCCCcccc
Confidence            8888877775 44

syringae 6; Provisional

>KOG0617|consensus

Probab=99.39  E-value=5.2e-15  Score=118.46  Aligned_cols=83  Identities=33%  Similarity=0.525  Sum_probs=72.1

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++++.|-+++|+++.++|. +..+.+|+.|++++|+++.++ ..++.++.|+.|+++-|++..+|.+ |+.++-|+.||+
T Consensus        33 s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhc
Confidence            5788899999999999985 788999999999999998886 5588899999999999999888875 788999999999


Q ss_pred             ecCccc
Q psy12210        204 SENSFI  209 (405)
Q Consensus       204 ~~N~l~  209 (405)
                      .+|.+.
T Consensus       110 tynnl~  115 (264)
T KOG0617|consen  110 TYNNLN  115 (264)
T ss_pred             cccccc
Confidence            988754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.30  E-value=1.8e-12  Score=120.85  Aligned_cols=163  Identities=20%  Similarity=0.235  Sum_probs=84.7

Q ss_pred             CccccCCCcCc-cCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccc
Q psy12210          1 MPRTLNNNNLT-YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK   79 (405)
Q Consensus         1 ~~L~l~~n~i~-~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~   79 (405)
                      +.|+|..++++ .-....|..+.+|+.|+++++.++... ...+...+...+..       ..+.++.+.+...+.    
T Consensus         1 ~~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~-~~~i~~~l~~~~~l-------~~l~l~~~~~~~~~~----   68 (319)
T cd00116           1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA-AKALASALRPQPSL-------KELCLSLNETGRIPR----   68 (319)
T ss_pred             CccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH-HHHHHHHHhhCCCc-------eEEeccccccCCcch----
Confidence            46899999998 334456788899999999999986421 11222222221111       111222222211000    


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCC---CcEEe
Q psy12210         80 CSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKR---LRRID  154 (405)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~---L~~L~  154 (405)
                                                        .+..++..+  .++++.|++++|.+....+..+..+.+   |++|+
T Consensus        69 ----------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~  114 (319)
T cd00116          69 ----------------------------------GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELK  114 (319)
T ss_pred             ----------------------------------HHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEE
Confidence                                              000111111  136677777777666544444444444   77777


Q ss_pred             cCCCcceee----cccccCCC-CCCCEEEccCCcCcccC----hhhhhcccCCcEEEeecCccc
Q psy12210        155 LSKNQISKV----AVDAFQGL-KSLTSLTLNNNNLTYLP----DGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       155 ls~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~l~----~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      +++|.+...    ....+..+ ++|+.|++++|.++.-.    ...+..+++|+.|++++|.+.
T Consensus       115 ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         115 LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            777766521    11234444 66777777777766211    123445566777777766543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.20  E-value=6.3e-13  Score=106.65  Aligned_cols=150  Identities=25%  Similarity=0.303  Sum_probs=83.8

Q ss_pred             cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCC
Q psy12210          3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG   82 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~   82 (405)
                      |-|+||+++.++|. +.++.+|+.|++++|+|+             .+|...........+++..|.+..+|..+-.-. 
T Consensus        38 LtLSHNKl~~vppn-ia~l~nlevln~~nnqie-------------~lp~~issl~klr~lnvgmnrl~~lprgfgs~p-  102 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIE-------------ELPTSISSLPKLRILNVGMNRLNILPRGFGSFP-  102 (264)
T ss_pred             hhcccCceeecCCc-HHHhhhhhhhhcccchhh-------------hcChhhhhchhhhheecchhhhhcCccccCCCc-
Confidence            66888888888886 578888888888888875             222222211222233444444444443321100 


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCceEEcCCCCcc--ccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         83 PVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN--KVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        83 ~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~--~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                                           ++.++|+++|++.  .+|-.++  +.++.|++++|.++-+|++ ++++++|+.|.+..|
T Consensus       103 ---------------------~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  103 ---------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDN  160 (264)
T ss_pred             ---------------------hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccC
Confidence                                 1255566665553  3454443  3455566666666655553 566666666666666


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChh
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG  190 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~  190 (405)
                      .+-+++ ..++.++.|++|.+.+|.++.+|++
T Consensus       161 dll~lp-keig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  161 DLLSLP-KEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             chhhCc-HHHHHHHHHHHHhcccceeeecChh
Confidence            655554 3355566666666666666666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.12  E-value=7e-11  Score=98.38  Aligned_cols=87  Identities=30%  Similarity=0.412  Sum_probs=42.2

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh-hhhhcccCCcEEE
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLRTLR  202 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~~L~  202 (405)
                      .+++.|++++|.|+.++.  +..++.|++|++++|.|+.+.+.....+++|+.|++++|+|..+.. ..++.+++|+.|+
T Consensus        42 ~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             cCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            478889999999998874  7888999999999999998864322467899999999999887654 3467788999999


Q ss_pred             eecCcccccc
Q psy12210        203 ISENSFICDC  212 (405)
Q Consensus       203 l~~N~l~~~~  212 (405)
                      +.+||+....
T Consensus       120 L~~NPv~~~~  129 (175)
T PF14580_consen  120 LEGNPVCEKK  129 (175)
T ss_dssp             -TT-GGGGST
T ss_pred             ccCCcccchh
Confidence            9999986443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.10  E-value=1.1e-10  Score=108.92  Aligned_cols=85  Identities=20%  Similarity=0.302  Sum_probs=59.5

Q ss_pred             CccEEEccCCCCCCCCc----ccccCC-CCCcEEecCCCcceee----cccccCCCCCCCEEEccCCcCcccCh----hh
Q psy12210        125 ATTELRLEQNDITELPP----KAFANY-KRLRRIDLSKNQISKV----AVDAFQGLKSLTSLTLNNNNLTYLPD----GV  191 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~----~~~~~l-~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~l~~----~~  191 (405)
                      +++.|++++|.++....    ..+..+ ++|++|++++|.++..    ....+..+.+|++|++++|.++....    ..
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            48899999988874222    234566 7889999999988732    12456677889999999998874221    22


Q ss_pred             hhcccCCcEEEeecCccc
Q psy12210        192 FAELFRLRTLRISENSFI  209 (405)
Q Consensus       192 f~~l~~L~~L~l~~N~l~  209 (405)
                      +...++|+.|++++|.+.
T Consensus       189 l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         189 LKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHhCCCCCEEeccCCccC
Confidence            344568999999888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.5e-10  Score=96.34  Aligned_cols=99  Identities=23%  Similarity=0.255  Sum_probs=52.4

Q ss_pred             ceEEcCCCCccccCCC-CCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPIL-LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~-~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|.+++++.- -.+.|+.|++++|.|+.+.......+++|++|++++|+|..+.. ..+..+++|+.|++.+|.
T Consensus        45 ~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   45 EVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             -EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             CEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            6777777877777631 13689999999999999976433568999999999999987643 457789999999999999


Q ss_pred             CcccCh---hhhhcccCCcEEEee
Q psy12210        184 LTYLPD---GVFAELFRLRTLRIS  204 (405)
Q Consensus       184 l~~l~~---~~f~~l~~L~~L~l~  204 (405)
                      ++....   .++..+|+|+.||-.
T Consensus       125 v~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen  125 VCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             GGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ccchhhHHHHHHHHcChhheeCCE
Confidence            986653   456778999999754

>KOG0532|consensus

Probab=99.05  E-value=6.4e-12  Score=118.28  Aligned_cols=193  Identities=23%  Similarity=0.337  Sum_probs=151.0

Q ss_pred             ceEEcCCCCccccCCCCC----CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC
Q psy12210        106 GIVDCREKGLNKVPILLP----EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN  181 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~----~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  181 (405)
                      -.+.+++.+++.+|..-.    .-....+++.|++..+|.+ +..+..|+.+.+..|.+..++ .+...+..|++++++.
T Consensus        53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip-~~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   53 GRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIP-EAICNLEALTFLDLSS  130 (722)
T ss_pred             cccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecc-hhhhhhhHHHHhhhcc
Confidence            456778888888885432    2446789999999999974 788889999999999999887 5688999999999999


Q ss_pred             CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210        182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET  261 (405)
Q Consensus       182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~  261 (405)
                      |+++.++...+.  --|+.+-+++|++.+                                    ++..+- ..      
T Consensus       131 NqlS~lp~~lC~--lpLkvli~sNNkl~~------------------------------------lp~~ig-~~------  165 (722)
T KOG0532|consen  131 NQLSHLPDGLCD--LPLKVLIVSNNKLTS------------------------------------LPEEIG-LL------  165 (722)
T ss_pred             chhhcCChhhhc--CcceeEEEecCcccc------------------------------------CCcccc-cc------
Confidence            999999987533  359999999998652                                    222111 00      


Q ss_pred             cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC--CCceEEEEE-ecceeeec
Q psy12210        262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP--EATTELTYM-VSIDRVDK  338 (405)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~i~~i~~  338 (405)
                                                             -.+..+|.+.|.+..+|..+-  .+++.|.+. |++..+| 
T Consensus       166 ---------------------------------------~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp-  205 (722)
T KOG0532|consen  166 ---------------------------------------PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP-  205 (722)
T ss_pred             ---------------------------------------hhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC-
Confidence                                                   036778888888888875553  577788888 9988888 


Q ss_pred             cchhccccccccCCccceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210        339 VLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK  394 (405)
Q Consensus       339 ~~~~~~~~~~~~~l~~~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~  394 (405)
                              ..+..++-..||++.|+|+.||.+ |.+|+.|++|-|.+|.|++-|.+
T Consensus       206 --------~El~~LpLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  206 --------EELCSLPLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             --------HHHhCCceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCChHH
Confidence                    444566668899999999999976 88999999999999999988765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=3.7e-10  Score=77.39  Aligned_cols=59  Identities=41%  Similarity=0.678  Sum_probs=29.9

Q ss_pred             CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCc
Q psy12210        149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       149 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      +|++|++++|.++.+++.+|.++++|++|++++|.++.+++++|..+++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555555555544445555555555555555555555555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.97  E-value=5.5e-10  Score=76.54  Aligned_cols=60  Identities=42%  Similarity=0.700  Sum_probs=57.6

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      ++++|++++|+++.++++.|.++++|+.|++++|.++.+++++|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            689999999999999999999999999999999999999999999999999999999975

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=8.4e-10  Score=106.08  Aligned_cols=192  Identities=24%  Similarity=0.348  Sum_probs=132.6

Q ss_pred             eEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCC-CCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        107 IVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYK-RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       107 ~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      .++++.+.+..-+..+.  +.++.|++.+|.++.+++. ..... +|+.|++++|.+..++ .....+++|+.|++++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh-hhhhccccccccccCCch
Confidence            35666666633332222  4688899999999998874 45553 8999999999998885 347788999999999999


Q ss_pred             CcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccc
Q psy12210        184 LTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS  263 (405)
Q Consensus       184 l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~  263 (405)
                      +++++... ...+.|+.+++++|.+.                                    .++...-..         
T Consensus       175 l~~l~~~~-~~~~~L~~L~ls~N~i~------------------------------------~l~~~~~~~---------  208 (394)
T COG4886         175 LSDLPKLL-SNLSNLNNLDLSGNKIS------------------------------------DLPPEIELL---------  208 (394)
T ss_pred             hhhhhhhh-hhhhhhhheeccCCccc------------------------------------cCchhhhhh---------
Confidence            99998742 36788999999998754                                    222210000         


Q ss_pred             cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-ecceeeeccc
Q psy12210        264 KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-VSIDRVDKVL  340 (405)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~i~~i~~~~  340 (405)
                                                           ..++.+.+++|.+..++...  ...+..+.+. |++..++   
T Consensus       209 -------------------------------------~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~---  248 (394)
T COG4886         209 -------------------------------------SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP---  248 (394)
T ss_pred             -------------------------------------hhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc---
Confidence                                                 03666777777544444332  3456666666 7777654   


Q ss_pred             hhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210        341 LYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK  394 (405)
Q Consensus       341 ~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~  394 (405)
                            ..++.+++ +.|++++|.++.++.  +..+.+++.|++++|.+..+++.
T Consensus       249 ------~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         249 ------ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ------chhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence                  56677777 888888888888876  67778888888888887766543

>KOG0532|consensus

Probab=98.94  E-value=5.2e-11  Score=112.26  Aligned_cols=108  Identities=20%  Similarity=0.422  Sum_probs=95.4

Q ss_pred             CCCccccCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210         98 PHPCRCADGIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT  175 (405)
Q Consensus        98 p~~~~c~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  175 (405)
                      ++.|-|.++++=+++|+++.+|..+.  ..+..|+.++|.+..+++ .++.+..|+.|.+..|++..++++ +..+ .|.
T Consensus       138 ~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~E-l~~L-pLi  214 (722)
T KOG0532|consen  138 DGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPEE-LCSL-PLI  214 (722)
T ss_pred             hhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCHH-HhCC-cee
Confidence            46677888999999999999998764  578889999999999997 489999999999999999999865 5544 488


Q ss_pred             EEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      +||++.|+++.||.. |..|..|+.|-+.+|++.
T Consensus       215 ~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  215 RLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             eeecccCceeecchh-hhhhhhheeeeeccCCCC
Confidence            999999999999974 899999999999999987

>KOG1259|consensus

Probab=98.78  E-value=1.7e-09  Score=94.65  Aligned_cols=83  Identities=17%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             cCceeecCCCCCCcCCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc-ccccCCc
Q psy12210        302 ADGIVDCREKGLNKVPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP-KAFANYK  376 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~-~~~~~l~  376 (405)
                      +|..||+++|.++++..+.  .-++++|.++ |.|+.+.          .+..+-+ ..||++.|+|..+.. ..++++|
T Consensus       330 ~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS----------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP  399 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS----------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLP  399 (490)
T ss_pred             cceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh----------hhHhhhhheeccccccchhhHHHhccccccc
Confidence            5888899998888776543  3589999999 9999886          4566777 999999999998864 4478899


Q ss_pred             cCceeecccCCCcccChh
Q psy12210        377 RLRRIRLEQNDITELPPK  394 (405)
Q Consensus       377 ~L~~L~L~~N~l~~i~~~  394 (405)
                      .|.++.|.+|.+..++..
T Consensus       400 CLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  400 CLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             HHHHHhhcCCCccccchH
Confidence            999999999999988753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.77  E-value=5e-09  Score=100.73  Aligned_cols=180  Identities=24%  Similarity=0.350  Sum_probs=137.3

Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC-CCCEEEccCCcCcccChhhhhcccCCcEEEeecC
Q psy12210        128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN  206 (405)
Q Consensus       128 ~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N  206 (405)
                      .+++..+.+..... .+..+..+..|++.+|.++.+++. ..... +|+.|++++|++..++. ....+++|+.|+++.|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhh-hhhccccccccccCCc
Confidence            57777887743332 256668899999999999999753 33343 89999999999999963 3578999999999999


Q ss_pred             ccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCC
Q psy12210        207 SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPT  286 (405)
Q Consensus       207 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  286 (405)
                      ++.                                    +++......                                
T Consensus       174 ~l~------------------------------------~l~~~~~~~--------------------------------  185 (394)
T COG4886         174 DLS------------------------------------DLPKLLSNL--------------------------------  185 (394)
T ss_pred             hhh------------------------------------hhhhhhhhh--------------------------------
Confidence            854                                    222211000                                


Q ss_pred             CCCCCCCCCCCCccccCceeecCCCCCCcCCCC--CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCC
Q psy12210        287 GECAAEPSCPHPCRCADGIVDCREKGLNKVPIL--LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQN  362 (405)
Q Consensus       287 ~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~--~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N  362 (405)
                                    -.++.+++++|+++.+|..  .+..+.+|.++ |.+..++         ..+..+.. ..+.+++|
T Consensus       186 --------------~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~---------~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         186 --------------SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELL---------SSLSNLKNLSGLELSNN  242 (394)
T ss_pred             --------------hhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecc---------hhhhhcccccccccCCc
Confidence                          0488899999999999986  56679999999 8655554         56778888 88889999


Q ss_pred             CCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       363 ~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      ++..++ ..++++++++.|++++|+++.++.  +..+.+|+.
T Consensus       243 ~~~~~~-~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~  281 (394)
T COG4886         243 KLEDLP-ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRE  281 (394)
T ss_pred             eeeecc-chhccccccceecccccccccccc--ccccCccCE
Confidence            998864 347888999999999999999987  666666654

>KOG1259|consensus

Probab=98.72  E-value=1.5e-09  Score=94.98  Aligned_cols=102  Identities=21%  Similarity=0.237  Sum_probs=77.2

Q ss_pred             ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      +.+++++|+++.+.. ....+++.|||++|.++.+..+ -.++.+++.|.+++|.+.++.  .++.+-+|..||+.+|+|
T Consensus       310 r~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gw-h~KLGNIKtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  310 RRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGW-HLKLGNIKTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             eEEeccccceeeehhhhhcccceEeecccchhHhhhhh-HhhhcCEeeeehhhhhHhhhh--hhHhhhhheeccccccch
Confidence            455555555555543 1235789999999999988865 467889999999999998774  367777888999999998


Q ss_pred             cccCh-hhhhcccCCcEEEeecCcccc
Q psy12210        185 TYLPD-GVFAELFRLRTLRISENSFIC  210 (405)
Q Consensus       185 ~~l~~-~~f~~l~~L~~L~l~~N~l~~  210 (405)
                      ..+.. ..++++|.|+++.+.+|++..
T Consensus       387 e~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  387 EELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhHHHhcccccccHHHHHhhcCCCccc
Confidence            87764 235778889999999999763

>KOG0531|consensus

Probab=98.60  E-value=7.4e-09  Score=99.94  Aligned_cols=215  Identities=20%  Similarity=0.215  Sum_probs=140.5

Q ss_pred             ceEEcCCCCccccCC--CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPI--LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~--~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      ..+++.+|++..+..  ....+|++|++++|.|+.+..  +..+..|+.|++++|.|..+.  .+..+.+|+.+++++|.
T Consensus        98 ~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   98 EALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNR  173 (414)
T ss_pred             eeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhcc--CCccchhhhcccCCcch
Confidence            455555666655554  224689999999999999886  677888999999999999885  36668899999999999


Q ss_pred             CcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccc
Q psy12210        184 LTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS  263 (405)
Q Consensus       184 l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~  263 (405)
                      +..+.......+.+++.+++.+|.+...-.+.........              .+..+.+                   
T Consensus       174 i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~--------------~l~~n~i-------------------  220 (414)
T KOG0531|consen  174 IVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLL--------------SLLDNKI-------------------  220 (414)
T ss_pred             hhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHh--------------hcccccc-------------------
Confidence            9988872036688899999999986632222111111110              1111111                   


Q ss_pred             cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC--CCCCceEEEEE-ecceeeeccc
Q psy12210        264 KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL--LPEATTELTYM-VSIDRVDKVL  340 (405)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~--~~~~l~~L~l~-n~i~~i~~~~  340 (405)
                                         +.+.+...       ..++.++.+++++|++..++..  .+..+..|++. |++..+.   
T Consensus       221 -------------------~~~~~l~~-------~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~---  271 (414)
T KOG0531|consen  221 -------------------SKLEGLNE-------LVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE---  271 (414)
T ss_pred             -------------------eeccCccc-------chhHHHHHHhcccCccccccccccccccccccchhhccccccc---
Confidence                               11111000       0001377888999999887533  34678888888 8888765   


Q ss_pred             hhccccccccCCcc-ceEEecCCCCcc---cCccc-ccCCccCceeecccCCCcccCh
Q psy12210        341 LYSYISNNFKRWTN-RSRRLEQNDITE---LPPKA-FANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       341 ~~~~~~~~~~~l~~-~~L~L~~N~i~~---i~~~~-~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                             .+..... ..+.+..|.+..   +.... ....+.++.+.+.+|.+....+
T Consensus       272 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  272 -------GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             -------cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence                   3455556 777777777662   22221 4456889999999998877654

>KOG1859|consensus

Probab=98.59  E-value=2.9e-09  Score=103.35  Aligned_cols=164  Identities=23%  Similarity=0.210  Sum_probs=89.8

Q ss_pred             hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCCCCCCCCCCCCCCCCC
Q psy12210         18 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSC   97 (405)
Q Consensus        18 f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (405)
                      +..+.+|++|.+.++.+.+..++.-+..-++.+              +-.+.+..+...+..|.++...+..|+.     
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~L--------------IC~~Sl~Al~~v~ascggd~~ns~~Wn~-----  165 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKL--------------ICHNSLDALRHVFASCGGDISNSPVWNK-----  165 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhh--------------hhhccHHHHHHHHHHhccccccchhhhh-----
Confidence            457889999999999998766666555443332              2223333343333334333322222221     


Q ss_pred             CCCccccCceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210         98 PHPCRCADGIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT  175 (405)
Q Consensus        98 p~~~~c~~~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  175 (405)
                             +...+|++|.++.+...+  .+.++.|+|++|++++..  .+..+++|+.|||++|.+..++.-.-.++. |+
T Consensus       166 -------L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~  235 (1096)
T KOG1859|consen  166 -------LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQ  235 (1096)
T ss_pred             -------HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-he
Confidence                   245556666665555433  345666666666666555  355666666666666666665543333444 55


Q ss_pred             EEEccCCcCcccChhhhhcccCCcEEEeecCcccccc
Q psy12210        176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC  212 (405)
Q Consensus       176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~  212 (405)
                      .|.+++|.++.+..  +.++.+|+.||+++|-+....
T Consensus       236 ~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hs  270 (1096)
T KOG1859|consen  236 LLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHS  270 (1096)
T ss_pred             eeeecccHHHhhhh--HHhhhhhhccchhHhhhhcch
Confidence            56666665555543  345555555555555544433

>KOG3207|consensus

Probab=98.58  E-value=6.9e-09  Score=95.25  Aligned_cols=212  Identities=15%  Similarity=0.169  Sum_probs=123.3

Q ss_pred             CCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecc--cccCCCCCCCEEEccCCcCcccCh-hhhhcccCCc
Q psy12210        124 EATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLR  199 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~  199 (405)
                      +.|+.+.|+...+..++. .....+++++.|++++|.+....+  .-...+++|+.|+++.|++..... ..-..++.|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            467777777777776653 345677788888888887665432  123456777788888877653222 1112456777


Q ss_pred             EEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCC
Q psy12210        200 TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNS  279 (405)
Q Consensus       200 ~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (405)
                      .|.++.+.++    -++....+...+..       ..+.+..+....+...                             
T Consensus       201 ~L~l~~CGls----~k~V~~~~~~fPsl-------~~L~L~~N~~~~~~~~-----------------------------  240 (505)
T KOG3207|consen  201 QLVLNSCGLS----WKDVQWILLTFPSL-------EVLYLEANEIILIKAT-----------------------------  240 (505)
T ss_pred             eEEeccCCCC----HHHHHHHHHhCCcH-------HHhhhhcccccceecc-----------------------------
Confidence            7777775544    22222222222211       1111111110000000                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC----CCCCceEEEEE-ecceeeeccchhccccccccCCcc
Q psy12210        280 CPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL----LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN  354 (405)
Q Consensus       280 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~----~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~  354 (405)
                                      +..-.|.|+.||+++|++-.++..    .++.|..|+++ +.|.++.....-.  ..-...+++
T Consensus       241 ----------------~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s--~~kt~~f~k  302 (505)
T KOG3207|consen  241 ----------------STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES--LDKTHTFPK  302 (505)
T ss_pred             ----------------hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc--hhhhccccc
Confidence                            000113688999999998877632    36788889999 8888875111000  011345677


Q ss_pred             -ceEEecCCCCcccCc-ccccCCccCceeecccCCCcccCh
Q psy12210        355 -RSRRLEQNDITELPP-KAFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       355 -~~L~L~~N~i~~i~~-~~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                       +.|+++.|+|..++. ..+..+++|+.|.+..|.++.-..
T Consensus       303 L~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  303 LEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             ceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence             999999999977653 234557899999999988876554

>KOG0531|consensus

Probab=98.54  E-value=1e-08  Score=99.01  Aligned_cols=83  Identities=20%  Similarity=0.214  Sum_probs=56.6

Q ss_pred             cCceeecCCCCCCcCCCCC-CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccC
Q psy12210        302 ADGIVDCREKGLNKVPILL-PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRL  378 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~-~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L  378 (405)
                      +++.+++.+|.+..+.... ...+..+.+. |++..+.        +.......+ +.+++++|++..++. .+..+..+
T Consensus       187 ~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--------~l~~~~~~~L~~l~l~~n~i~~~~~-~~~~~~~l  257 (414)
T KOG0531|consen  187 SLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--------GLNELVMLHLRELYLSGNRISRSPE-GLENLKNL  257 (414)
T ss_pred             chHHHhccCCchhcccchHHHHHHHHhhcccccceecc--------CcccchhHHHHHHhcccCccccccc-cccccccc
Confidence            5778888888887664322 2344455777 8877765        111111115 788999999998862 36678899


Q ss_pred             ceeecccCCCcccCh
Q psy12210        379 RRIRLEQNDITELPP  393 (405)
Q Consensus       379 ~~L~L~~N~l~~i~~  393 (405)
                      ..+++.+|++..+..
T Consensus       258 ~~l~~~~n~~~~~~~  272 (414)
T KOG0531|consen  258 PVLDLSSNRISNLEG  272 (414)
T ss_pred             cccchhhcccccccc
Confidence            999999998887664

>KOG3207|consensus

Probab=98.53  E-value=2.7e-08  Score=91.49  Aligned_cols=201  Identities=15%  Similarity=0.145  Sum_probs=120.8

Q ss_pred             ceEEcCCCCccccCC----CCCCCccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeeccc-ccCCCCCCCEEE
Q psy12210        106 GIVDCREKGLNKVPI----LLPEATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVAVD-AFQGLKSLTSLT  178 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~----~~~~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~  178 (405)
                      +.+.+++......+.    ...++++.|+|++|-+....+  .....+++|+.|+++.|.+...... .-..++.|+.|.
T Consensus       124 ~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~  203 (505)
T KOG3207|consen  124 REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLV  203 (505)
T ss_pred             hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEE
Confidence            555566655555552    123578889999888876544  2346788899999998887643321 112467788888


Q ss_pred             ccCCcCcccCh-hhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCc
Q psy12210        179 LNNNNLTYLPD-GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGS  257 (405)
Q Consensus       179 l~~n~l~~l~~-~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~  257 (405)
                      ++.|.++.-+- .....+|+|+.|++.+|...            ............+..+++.++++-+.+....-.   
T Consensus       204 l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~------------~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~---  268 (505)
T KOG3207|consen  204 LNSCGLSWKDVQWILLTFPSLEVLYLEANEII------------LIKATSTKILQTLQELDLSNNNLIDFDQGYKVG---  268 (505)
T ss_pred             eccCCCCHHHHHHHHHhCCcHHHhhhhccccc------------ceecchhhhhhHHhhccccCCcccccccccccc---
Confidence            88888773332 23456788999998888421            001111111112333445444444333211100   


Q ss_pred             cccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC--CC-------CCCCCceEEE
Q psy12210        258 SMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PI-------LLPEATTELT  328 (405)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~--p~-------~~~~~l~~L~  328 (405)
                                                .+               -.|+.|.++.+.+.++  |.       ..++.+++|+
T Consensus       269 --------------------------~l---------------~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~  307 (505)
T KOG3207|consen  269 --------------------------TL---------------PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLN  307 (505)
T ss_pred             --------------------------cc---------------cchhhhhccccCcchhcCCCccchhhhcccccceeee
Confidence                                      00               0477788888888775  22       2478999999


Q ss_pred             EE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc
Q psy12210        329 YM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP  369 (405)
Q Consensus       329 l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~  369 (405)
                      +. |+|...+.       ...+..+++ +.+....|.++.-..
T Consensus       308 i~~N~I~~w~s-------l~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  308 ISENNIRDWRS-------LNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             cccCccccccc-------cchhhccchhhhhhccccccccccc
Confidence            99 99977651       234556677 778877888875543

>PLN03150 hypothetical protein; Provisional

Probab=98.38  E-value=8.4e-07  Score=89.84  Aligned_cols=84  Identities=24%  Similarity=0.336  Sum_probs=38.2

Q ss_pred             ccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeec
Q psy12210        126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISE  205 (405)
Q Consensus       126 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~  205 (405)
                      ++.|+|++|.++...+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++...+..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            34444444444443333444444444444444444443334444444444444444444433333344444444444444


Q ss_pred             Cccc
Q psy12210        206 NSFI  209 (405)
Q Consensus       206 N~l~  209 (405)
                      |.+.
T Consensus       500 N~l~  503 (623)
T PLN03150        500 NSLS  503 (623)
T ss_pred             Cccc
Confidence            4433

>KOG1909|consensus

Probab=98.34  E-value=1.6e-07  Score=84.07  Aligned_cols=84  Identities=14%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             cCceeecCCCCCCcC-------CCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcc--
Q psy12210        302 ADGIVDCREKGLNKV-------PILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPK--  370 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~-------p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~--  370 (405)
                      .|++||+..|.++.-       +...|+.++.++++ +.++.-..   ..+....-...+. +++.|.+|.|+.-...  
T Consensus       214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga---~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l  290 (382)
T KOG1909|consen  214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA---IAFVDALKESAPSLEVLELAGNEITRDAALAL  290 (382)
T ss_pred             cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH---HHHHHHHhccCCCCceeccCcchhHHHHHHHH
Confidence            577888888877642       12235678888888 76664331   1111122233567 9999999999864432  


Q ss_pred             --cccCCccCceeecccCCC
Q psy12210        371 --AFANYKRLRRIRLEQNDI  388 (405)
Q Consensus       371 --~~~~l~~L~~L~L~~N~l  388 (405)
                        +....+.|..|+|++|++
T Consensus       291 a~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  291 AACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhcchhhHHhcCCcccc
Confidence              234468999999999998

>PLN03150 hypothetical protein; Provisional

Probab=98.28  E-value=1.5e-06  Score=88.09  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=88.4

Q ss_pred             CceEEcCCCCcc-ccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC
Q psy12210        105 DGIVDCREKGLN-KVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN  181 (405)
Q Consensus       105 ~~~l~~~~n~l~-~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  181 (405)
                      ...+++++++++ .+|..+  .++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            367888999886 566544  36899999999999976666799999999999999999988888999999999999999


Q ss_pred             CcCcccChhhhhc-ccCCcEEEeecCccccc
Q psy12210        182 NNLTYLPDGVFAE-LFRLRTLRISENSFICD  211 (405)
Q Consensus       182 n~l~~l~~~~f~~-l~~L~~L~l~~N~l~~~  211 (405)
                      |.++...+..+.. ..++..+++.+|+..|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccC
Confidence            9998554445554 35678899999987654

>KOG1859|consensus

Probab=98.18  E-value=6e-08  Score=94.49  Aligned_cols=85  Identities=25%  Similarity=0.356  Sum_probs=62.7

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh-hhhhcccCCcEEE
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLRTLR  202 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~~L~  202 (405)
                      ..|+.|||++|.+..++.-...++. |+.|.+++|.++++-  .+.++.+|+.||+++|-|..... ..+..+..|+.|+
T Consensus       209 ~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~  285 (1096)
T KOG1859|consen  209 PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW  285 (1096)
T ss_pred             ccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence            3688888888888888865555554 888888888888763  46678888888888887764432 1134466788899


Q ss_pred             eecCccccc
Q psy12210        203 ISENSFICD  211 (405)
Q Consensus       203 l~~N~l~~~  211 (405)
                      +.||++-|.
T Consensus       286 LeGNPl~c~  294 (1096)
T KOG1859|consen  286 LEGNPLCCA  294 (1096)
T ss_pred             hcCCccccC
Confidence            999998753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=2.2e-06  Score=53.83  Aligned_cols=38  Identities=34%  Similarity=0.686  Sum_probs=33.2

Q ss_pred             ceEEecCCCCcccCcccccCCccCceeecccCCCcccCh
Q psy12210        355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       355 ~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                      ++|++++|+|+.+++. ++++++|+.|++++|+|+++++
T Consensus         4 ~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    4 EELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred             eEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence            7899999999999874 8899999999999999998764

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.00  E-value=3e-05  Score=61.71  Aligned_cols=63  Identities=30%  Similarity=0.468  Sum_probs=27.6

Q ss_pred             CCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        139 LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       139 l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++..+|.++.+|+.+.+.. .+..+...+|.++++|+.+.+..+ +..++..+|..+++|+.+.+
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~   65 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF   65 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence            3444555555566655553 455555555555555555555543 55555555555555555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.93  E-value=3.8e-05  Score=61.14  Aligned_cols=127  Identities=24%  Similarity=0.474  Sum_probs=64.7

Q ss_pred             eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210        162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG  241 (405)
Q Consensus       162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (405)
                      .++..+|.++.+|+.+.+.. .+..++..+|..+++|+.+.+..+                                   
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-----------------------------------   45 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-----------------------------------   45 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-----------------------------------
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-----------------------------------
Confidence            46667889999999999874 688899989998888998887653                                   


Q ss_pred             CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210        242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP  321 (405)
Q Consensus       242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~  321 (405)
                        +..+....|...                                                                  
T Consensus        46 --~~~i~~~~F~~~------------------------------------------------------------------   57 (129)
T PF13306_consen   46 --LTSIGDNAFSNC------------------------------------------------------------------   57 (129)
T ss_dssp             --TSCE-TTTTTT-------------------------------------------------------------------
T ss_pred             --ccccceeeeecc------------------------------------------------------------------
Confidence              222333222100                                                                  


Q ss_pred             CCceEEEEEecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210        322 EATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK  400 (405)
Q Consensus       322 ~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~  400 (405)
                      +.++.+.+.+.+..++        ...|..+.. +.+++..+ ++.++..+|.++ .|+.+.+.. .++.|+..+|.+++
T Consensus        58 ~~l~~i~~~~~~~~i~--------~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~  126 (129)
T PF13306_consen   58 KSLESITFPNNLKSIG--------DNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT  126 (129)
T ss_dssp             TT-EEEEETSTT-EE---------TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred             cccccccccccccccc--------cccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence            1344455444444555        566777777 77777665 777777777776 777777775 67777777777777


Q ss_pred             ccc
Q psy12210        401 RLR  403 (405)
Q Consensus       401 ~L~  403 (405)
                      +|+
T Consensus       127 ~l~  129 (129)
T PF13306_consen  127 KLK  129 (129)
T ss_dssp             ---
T ss_pred             cCC
Confidence            664

>KOG4658|consensus

Probab=97.89  E-value=8.8e-06  Score=84.71  Aligned_cols=77  Identities=23%  Similarity=0.308  Sum_probs=55.6

Q ss_pred             ceEEcCCC-CccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREK-GLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n-~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  182 (405)
                      +++|+++| .+.++|..+.  -+|++|+++++.|+.+|.+ +.+++.|.+|++..+.-....+.....+++|++|.+...
T Consensus       574 rVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  574 RVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             EEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            77777743 3577776654  4788888888888888874 788888888888877655444565666888888887555


Q ss_pred             c
Q psy12210        183 N  183 (405)
Q Consensus       183 ~  183 (405)
                      .
T Consensus       653 ~  653 (889)
T KOG4658|consen  653 A  653 (889)
T ss_pred             c
Confidence            4

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.6e-05  Score=49.92  Aligned_cols=38  Identities=42%  Similarity=0.700  Sum_probs=20.2

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceee
Q psy12210        125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV  163 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~  163 (405)
                      +|++|++++|.|+.+++ .+.++++|+.|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            45555566666555554 355555555555555555544

...

>TIGR00864 PCC polycystin cation channel protein

Probab=97.85  E-value=1.8e-05  Score=88.37  Aligned_cols=78  Identities=31%  Similarity=0.609  Sum_probs=68.9

Q ss_pred             EccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCC---CCccccCCCCCCCCCcccccCCCcccc
Q psy12210        178 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL---GLYTKCFAPSHIKGQNILDIPEHEFKC  254 (405)
Q Consensus       178 ~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~l~~~~~~~  254 (405)
                      ||++|+|+.++++.|..+++|+.|+|++|++.|+|+++||..|+......   .....|..|..+++..+.++....+.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            57899999999999999999999999999999999999999998887543   234679999999999999998877666


Q ss_pred             c
Q psy12210        255 S  255 (405)
Q Consensus       255 ~  255 (405)
                      .
T Consensus        81 ~   81 (2740)
T TIGR00864        81 D   81 (2740)
T ss_pred             C
Confidence            5

Note: this model has been restricted to the amino half because for technical reasons.

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=0.00011  Score=69.08  Aligned_cols=69  Identities=25%  Similarity=0.506  Sum_probs=43.8

Q ss_pred             ceEEcCCCCccccCCCCCCCccEEEccC-CCCCCCCcccccCCCCCcEEecCCC-cceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILLPEATTELRLEQ-NDITELPPKAFANYKRLRRIDLSKN-QISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      +.++++++.++++| .+|.+|+.|.+++ +.++.++. .+.  .+|+.|.+++| .+..++       .+|+.|++..+.
T Consensus        55 ~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~-~LP--~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~n~  123 (426)
T PRK15386         55 GRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPG-SIP--EGLEKLTVCHCPEISGLP-------ESVRSLEIKGSA  123 (426)
T ss_pred             CEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCc-hhh--hhhhheEccCcccccccc-------cccceEEeCCCC
Confidence            77888888888888 5777888888876 44444443 232  46777777776 554332       346666666554


Q ss_pred             Cc
Q psy12210        184 LT  185 (405)
Q Consensus       184 l~  185 (405)
                      ..
T Consensus       124 ~~  125 (426)
T PRK15386        124 TD  125 (426)
T ss_pred             Cc
Confidence            43

>KOG1909|consensus

Probab=97.76  E-value=3.1e-05  Score=69.78  Aligned_cols=177  Identities=18%  Similarity=0.157  Sum_probs=105.1

Q ss_pred             hhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCCCCCCCCCCCCCCCC
Q psy12210         17 VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPS   96 (405)
Q Consensus        17 ~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (405)
                      ++...++|++||||+|.| |..+++-+..++++...       ...+.+.++.+........... ++     .++  ..
T Consensus        87 aL~~~~~L~~ldLSDNA~-G~~g~~~l~~ll~s~~~-------L~eL~L~N~Glg~~ag~~l~~a-l~-----~l~--~~  150 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAF-GPKGIRGLEELLSSCTD-------LEELYLNNCGLGPEAGGRLGRA-LF-----ELA--VN  150 (382)
T ss_pred             HHhcCCceeEeecccccc-CccchHHHHHHHHhccC-------HHHHhhhcCCCChhHHHHHHHH-HH-----HHH--HH
Confidence            456778899999999998 44444444444443222       2234444444443222211000 00     000  00


Q ss_pred             CCCCccccCceEEcCCCCccccCCCC-------CCCccEEEccCCCCCCCCc----ccccCCCCCcEEecCCCcceeec-
Q psy12210         97 CPHPCRCADGIVDCREKGLNKVPILL-------PEATTELRLEQNDITELPP----KAFANYKRLRRIDLSKNQISKVA-  164 (405)
Q Consensus        97 ~p~~~~c~~~~l~~~~n~l~~lp~~~-------~~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~-  164 (405)
                      -.-..+-.++++.|.+|.+...+...       .+.+..+.+..|.|..-..    ..|..+++|+.|++..|.++... 
T Consensus       151 kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs  230 (382)
T KOG1909|consen  151 KKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS  230 (382)
T ss_pred             hccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH
Confidence            00000112488888888887776431       1478888888888875333    34677888888888888887543 


Q ss_pred             ---ccccCCCCCCCEEEccCCcCcccChhhh-----hcccCCcEEEeecCccc
Q psy12210        165 ---VDAFQGLKSLTSLTLNNNNLTYLPDGVF-----AELFRLRTLRISENSFI  209 (405)
Q Consensus       165 ---~~~~~~l~~L~~L~l~~n~l~~l~~~~f-----~~l~~L~~L~l~~N~l~  209 (405)
                         ...+..+++|+.|+++++.++.-...+|     ...++|+.+.+.+|.++
T Consensus       231 ~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  231 VALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence               2456667788888888888876665444     24578888888888766

>KOG4579|consensus

Probab=97.75  E-value=1.4e-06  Score=67.84  Aligned_cols=101  Identities=19%  Similarity=0.276  Sum_probs=76.2

Q ss_pred             ceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  182 (405)
                      ..+++++|.+.++|..+   ++.++.|++++|.|..+|.. +..++.|+.|+++.|.+...+ ..+..+.++..|+..+|
T Consensus        56 ~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p-~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   56 TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP-RVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             EEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch-HHHHHHHhHHHhcCCCC
Confidence            66888999999998655   45788899999999999986 889999999999999988775 44555888888889999


Q ss_pred             cCcccChhhhhcccCCcEEEeecCccc
Q psy12210        183 NLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       183 ~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      .+..++-+.|. -......++.++++.
T Consensus       134 a~~eid~dl~~-s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  134 ARAEIDVDLFY-SSLPALIKLGNEPLG  159 (177)
T ss_pred             ccccCcHHHhc-cccHHHHHhcCCccc
Confidence            99988877543 122222334555554

>KOG4579|consensus

Probab=97.63  E-value=4.7e-06  Score=65.06  Aligned_cols=85  Identities=20%  Similarity=0.237  Sum_probs=73.6

Q ss_pred             cCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210        302 ADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK  376 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~  376 (405)
                      .+...++++|.++.+|..+   |+.++.|+++ |+|+++|         ..++.++. +.++++.|.+...+.- +..+.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP---------eE~Aam~aLr~lNl~~N~l~~~p~v-i~~L~  123 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP---------EELAAMPALRSLNLRFNPLNAEPRV-IAPLI  123 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch---------HHHhhhHHhhhcccccCccccchHH-HHHHH
Confidence            3778899999999998654   6789999999 9999998         45899999 9999999999999865 44599


Q ss_pred             cCceeecccCCCcccChhhc
Q psy12210        377 RLRRIRLEQNDITELPPKAF  396 (405)
Q Consensus       377 ~L~~L~L~~N~l~~i~~~~f  396 (405)
                      ++..|+..+|.+..|+...|
T Consensus       124 ~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen  124 KLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             hHHHhcCCCCccccCcHHHh
Confidence            99999999999999987643

>KOG2982|consensus

Probab=97.54  E-value=1.6e-05  Score=70.15  Aligned_cols=83  Identities=27%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             CCccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeeccccc-CCCCCCCEEEccCCcCc--ccChhhhhcccCC
Q psy12210        124 EATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLT--YLPDGVFAELFRL  198 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~--~l~~~~f~~l~~L  198 (405)
                      +.++.++|.+|.|++=..  ..+.++++|+.|+++.|.+.... +.+ ....+|+.|-+.+..+.  ... .....+|++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~-s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQST-SSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhh-hhhhcchhh
Confidence            567788888888875221  24577888888888888877544 223 24567777777777654  222 234567777


Q ss_pred             cEEEeecCcc
Q psy12210        199 RTLRISENSF  208 (405)
Q Consensus       199 ~~L~l~~N~l  208 (405)
                      +.|.++.|.+
T Consensus       149 telHmS~N~~  158 (418)
T KOG2982|consen  149 TELHMSDNSL  158 (418)
T ss_pred             hhhhhccchh
Confidence            8888887753

>KOG1644|consensus

Probab=97.50  E-value=0.00013  Score=60.88  Aligned_cols=100  Identities=26%  Similarity=0.268  Sum_probs=69.2

Q ss_pred             ceEEcCCCCccccCCCC-CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILL-PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~-~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~  183 (405)
                      ..+|+++|.+..++.-. ++.|.+|.+..|.|+.|.+.--.-+++|+.|.+.+|.|..+.. ..+..++.|++|.+-+|.
T Consensus        45 d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             ceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            56778888877766421 3578888888888888887644455678888888887765431 335677788888888887


Q ss_pred             CcccC---hhhhhcccCCcEEEeec
Q psy12210        184 LTYLP---DGVFAELFRLRTLRISE  205 (405)
Q Consensus       184 l~~l~---~~~f~~l~~L~~L~l~~  205 (405)
                      +++..   .-++..+++|+.||++.
T Consensus       125 v~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  125 VEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hhcccCceeEEEEecCcceEeehhh
Confidence            76443   23445677888888765

>KOG1644|consensus

Probab=97.43  E-value=0.00034  Score=58.54  Aligned_cols=103  Identities=23%  Similarity=0.288  Sum_probs=78.9

Q ss_pred             CceEEcCCCCccccCC--CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210        105 DGIVDCREKGLNKVPI--LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       105 ~~~l~~~~n~l~~lp~--~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  182 (405)
                      .+.+++.+.++..+-.  ........+|+++|.+..++.  |..+..|..|.+++|.|+.|.|.--.-+++|..|.+.+|
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            3566666666544432  112466789999999998885  899999999999999999999876666788999999999


Q ss_pred             cCcccCh-hhhhcccCCcEEEeecCccc
Q psy12210        183 NLTYLPD-GVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       183 ~l~~l~~-~~f~~l~~L~~L~l~~N~l~  209 (405)
                      .|..+.. .-+..+++|+.|.+-+|+..
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchh
Confidence            8765442 11567899999999999865

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.27  E-value=0.0015  Score=61.60  Aligned_cols=71  Identities=23%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC-cCcccChhhhhcccCCcEEE
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN-NLTYLPDGVFAELFRLRTLR  202 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~f~~l~~L~~L~  202 (405)
                      ..++.|++++|.++.+|.  +.  .+|++|.++++.--...|+.+  ..+|++|++++| .+..+|.       +|+.|+
T Consensus        52 ~~l~~L~Is~c~L~sLP~--LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV--LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcccCC--CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceEE
Confidence            468899999998888872  32  368999998743333333434  368899999888 5665543       467777


Q ss_pred             eecCc
Q psy12210        203 ISENS  207 (405)
Q Consensus       203 l~~N~  207 (405)
                      +..+.
T Consensus       119 L~~n~  123 (426)
T PRK15386        119 IKGSA  123 (426)
T ss_pred             eCCCC
Confidence            76544

>TIGR00864 PCC polycystin cation channel protein

Probab=97.18  E-value=0.00043  Score=77.88  Aligned_cols=78  Identities=31%  Similarity=0.602  Sum_probs=65.6

Q ss_pred             ccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCcc---ccccccCCCcccCCcccccCCCcccc
Q psy12210          4 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLG---LYTKCFAPSHIKGQNILDIPEHEFKC   80 (405)
Q Consensus         4 ~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~l~~~~~~~   80 (405)
                      ||++|+|+.|++++|..+++|+.|+|++|+|.++|++.|+..|++......   ....|..+..+.+..+.+++...|.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            799999999999999999999999999999999999999999998764322   23568888888888888887655444


Q ss_pred             C
Q psy12210         81 S   81 (405)
Q Consensus        81 ~   81 (405)
                      .
T Consensus        81 ~   81 (2740)
T TIGR00864        81 D   81 (2740)
T ss_pred             C
Confidence            3

Note: this model has been restricted to the amino half because for technical reasons.

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.83  E-value=0.00073  Score=37.65  Aligned_cols=28  Identities=50%  Similarity=1.144  Sum_probs=23.2

Q ss_pred             CCCCCccccCceEEcCCCCccccCCCCC
Q psy12210         96 SCPHPCRCADGIVDCREKGLNKVPILLP  123 (405)
Q Consensus        96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~  123 (405)
                      .||..|.|....++|++.+|+++|..+|
T Consensus         1 ~CP~~C~C~~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCSGLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEETTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEecCCEeECCCCCCCccCCCCc
Confidence            4899999999999999999999998764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>KOG2123|consensus

Probab=96.75  E-value=8.9e-05  Score=64.93  Aligned_cols=95  Identities=27%  Similarity=0.353  Sum_probs=72.6

Q ss_pred             ceEEcCCCCccccCCCC-CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILL-PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~-~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~  183 (405)
                      +.++|.+.+|..+.... -+.+.+|.|+-|+|+.+.+  +..+++|++|+|..|.|.++.. ..+.++++|+.|.+..|.
T Consensus        22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   22 KKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             hhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            67788888888776543 2578899999999998886  7889999999999999988753 457788889999998887


Q ss_pred             CcccC-----hhhhhcccCCcEEE
Q psy12210        184 LTYLP-----DGVFAELFRLRTLR  202 (405)
Q Consensus       184 l~~l~-----~~~f~~l~~L~~L~  202 (405)
                      -..-.     ..++..+|+|+.||
T Consensus       100 Cc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  100 CCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cccccchhHHHHHHHHcccchhcc
Confidence            54222     24556678888775

>KOG4658|consensus

Probab=96.57  E-value=0.002  Score=67.61  Aligned_cols=103  Identities=20%  Similarity=0.256  Sum_probs=66.4

Q ss_pred             cCceEEcCCCCccccCCCC-CCCccEEEccCCC--CCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEcc
Q psy12210        104 ADGIVDCREKGLNKVPILL-PEATTELRLEQND--ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN  180 (405)
Q Consensus       104 ~~~~l~~~~n~l~~lp~~~-~~~L~~L~L~~n~--i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  180 (405)
                      ..+.+..-+|.+..++... .+.+++|-+..|.  +..++.+.|..++.|..||+++|.-....|..++++-+|++|+++
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            3456666666666665443 2356677777765  666666667777777777777665544455666777777777777


Q ss_pred             CCcCcccChhhhhcccCCcEEEeecCc
Q psy12210        181 NNNLTYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       181 ~n~l~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      +..++++|.+ ++++.+|.+|++..+.
T Consensus       604 ~t~I~~LP~~-l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  604 DTGISHLPSG-LGNLKKLIYLNLEVTG  629 (889)
T ss_pred             CCCccccchH-HHHHHhhheecccccc
Confidence            7777777764 4666667666666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.56  E-value=0.0018  Score=56.75  Aligned_cols=87  Identities=14%  Similarity=0.020  Sum_probs=51.3

Q ss_pred             cCceeecCCCCCCcCCCC-------CCCCceEEEEE-ecceeeeccchhcccccccc--CCcc-ceEEecCCCCcccC-c
Q psy12210        302 ADGIVDCREKGLNKVPIL-------LPEATTELTYM-VSIDRVDKVLLYSYISNNFK--RWTN-RSRRLEQNDITELP-P  369 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~-------~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~--~l~~-~~L~L~~N~i~~i~-~  369 (405)
                      +|++||+..|.++..-..       -|+.++.|.+. +-++.-.....    ...|.  ..++ ..|-..+|.+..-. .
T Consensus       215 ~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v----~~~f~e~~~p~l~~L~~~Yne~~~~~i~  290 (388)
T COG5238         215 SLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV----LRRFNEKFVPNLMPLPGDYNERRGGIIL  290 (388)
T ss_pred             cceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH----HHHhhhhcCCCccccccchhhhcCceee
Confidence            588999999988754221       24567888777 65554331110    01122  2355 67777788554211 1


Q ss_pred             ----ccc--cCCccCceeecccCCCcccC
Q psy12210        370 ----KAF--ANYKRLRRIRLEQNDITELP  392 (405)
Q Consensus       370 ----~~~--~~l~~L~~L~L~~N~l~~i~  392 (405)
                          ..|  ..+|-|..|-+.+|+|....
T Consensus       291 ~~~l~~~e~~~~p~L~~le~ngNr~~E~~  319 (388)
T COG5238         291 DISLNEFEQDAVPLLVDLERNGNRIKELA  319 (388)
T ss_pred             eechhhhhhcccHHHHHHHHccCcchhHH
Confidence                112  45788888888889887654

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=96.44  E-value=0.0038  Score=36.32  Aligned_cols=30  Identities=47%  Similarity=1.152  Sum_probs=27.2

Q ss_pred             CCCCCccccCceEEcCCCCccccCCCCCCC
Q psy12210         96 SCPHPCRCADGIVDCREKGLNKVPILLPEA  125 (405)
Q Consensus        96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~  125 (405)
                      .||..|.|....++|++.+|+++|..+|..
T Consensus         1 ~CP~~C~C~~~~V~C~~~~L~~vP~~iP~~   30 (33)
T smart00013        1 ACPAPCNCSGTAVDCSGRGLTEVPLDLPPD   30 (33)
T ss_pred             CcCCCCEECCCEeEeCCCCcCccCCCCCcc
Confidence            499999999999999999999999988753

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.34  E-value=0.0012  Score=34.43  Aligned_cols=22  Identities=32%  Similarity=0.650  Sum_probs=14.3

Q ss_pred             cCceeecccCCCcccChhhcCCC
Q psy12210        377 RLRRIRLEQNDITELPPKAFANY  399 (405)
Q Consensus       377 ~L~~L~L~~N~l~~i~~~~f~~l  399 (405)
                      +|+.|||++|+|+.+|+. |++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT-
T ss_pred             CccEEECCCCcCEeCChh-hcCC
Confidence            467777777777777665 6543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123|consensus

Probab=96.30  E-value=0.00019  Score=62.94  Aligned_cols=80  Identities=28%  Similarity=0.316  Sum_probs=70.7

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh-hhhhcccCCcEEE
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD-GVFAELFRLRTLR  202 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~f~~l~~L~~L~  202 (405)
                      .+++.|++-++.+++|.-  ..+|+.|+.|.|+-|.|+++.|  |..|++|++|.+..|.|.++.+ ..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            478889999999998874  5789999999999999999965  8899999999999999999986 3346788999999


Q ss_pred             eecCc
Q psy12210        203 ISENS  207 (405)
Q Consensus       203 l~~N~  207 (405)
                      +..|+
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            99998

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.18  E-value=0.0019  Score=56.67  Aligned_cols=89  Identities=17%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             cCceeecCCCCCCcCCCCC------C-CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc---
Q psy12210        302 ADGIVDCREKGLNKVPILL------P-EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP---  369 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~------~-~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~---  369 (405)
                      .|++++|..|++...|...      + .+++.+.+. |.|.-   .+..++.-..+..+++ ++|||..|-++....   
T Consensus       158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp---egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRP---EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc---chhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            4888999999888766432      1 378888888 87663   2223332334455677 889999998875543   


Q ss_pred             -ccccCCccCceeecccCCCcccCh
Q psy12210        370 -KAFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       370 -~~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                       .++..++.|+.|.+..|.++.-..
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~  259 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGV  259 (388)
T ss_pred             HHHhcccchhhhccccchhhccccH
Confidence             334556788888888887776543

>KOG2120|consensus

Probab=95.94  E-value=0.00019  Score=63.59  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             ceEEcCCCCccccCC--CCCCCccEEEccCCCCCCCC-cccccCC-CCCcEEecCCCcceeec-ccccCCCCCCCEEEcc
Q psy12210        106 GIVDCREKGLNKVPI--LLPEATTELRLEQNDITELP-PKAFANY-KRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLN  180 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~--~~~~~L~~L~L~~n~i~~l~-~~~~~~l-~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~  180 (405)
                      +.+|+.+..+...--  -.-..+.++.+....+...- .+.+.-. ..|+.+|+++..|+.-. ..-+..+..|+.|++.
T Consensus       139 ~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE  218 (419)
T KOG2120|consen  139 QTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE  218 (419)
T ss_pred             eeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccc
Confidence            667777666543210  01134444444433332210 0111111 23555555555544210 1223345555555555


Q ss_pred             CCcCcccChhhhhcccCCcEEEeecC
Q psy12210        181 NNNLTYLPDGVFAELFRLRTLRISEN  206 (405)
Q Consensus       181 ~n~l~~l~~~~f~~l~~L~~L~l~~N  206 (405)
                      ++++.+-....+++-.+|+.++++..
T Consensus       219 g~~LdD~I~~~iAkN~~L~~lnlsm~  244 (419)
T KOG2120|consen  219 GLRLDDPIVNTIAKNSNLVRLNLSMC  244 (419)
T ss_pred             ccccCcHHHHHHhccccceeeccccc
Confidence            55555443344444555555555553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.86  E-value=0.0067  Score=33.08  Aligned_cols=23  Identities=39%  Similarity=0.764  Sum_probs=19.5

Q ss_pred             CccCceeecccCCCcccChhhcC
Q psy12210        375 YKRLRRIRLEQNDITELPPKAFA  397 (405)
Q Consensus       375 l~~L~~L~L~~N~l~~i~~~~f~  397 (405)
                      +++|+.|+|++|+|+.++..+|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46789999999999999988776

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.86  E-value=0.0067  Score=33.08  Aligned_cols=23  Identities=39%  Similarity=0.764  Sum_probs=19.5

Q ss_pred             CccCceeecccCCCcccChhhcC
Q psy12210        375 YKRLRRIRLEQNDITELPPKAFA  397 (405)
Q Consensus       375 l~~L~~L~L~~N~l~~i~~~~f~  397 (405)
                      +++|+.|+|++|+|+.++..+|+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46789999999999999988776

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.31  E-value=0.01  Score=28.73  Aligned_cols=17  Identities=41%  Similarity=0.710  Sum_probs=9.6

Q ss_pred             ccCceeecccCCCcccC
Q psy12210        376 KRLRRIRLEQNDITELP  392 (405)
Q Consensus       376 ~~L~~L~L~~N~l~~i~  392 (405)
                      ++|+.|+|++|+|+++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46778888888777664

...

>KOG2739|consensus

Probab=95.24  E-value=0.011  Score=51.59  Aligned_cols=80  Identities=24%  Similarity=0.305  Sum_probs=42.2

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCcEEecCCC--cceeecccccCCCCCCCEEEccCCcCcc---cChhhhhcccCCc
Q psy12210        125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKN--QISKVAVDAFQGLKSLTSLTLNNNNLTY---LPDGVFAELFRLR  199 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~---l~~~~f~~l~~L~  199 (405)
                      .++.+++.+..++.+..  |..+++|++|.++.|  ++..-.+-....+++|+++++++|+|..   +.+  ...+.+|.
T Consensus        44 ~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK  119 (260)
T ss_pred             chhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence            44455555555554442  556666666666666  3332222223344666666666666553   222  34455566


Q ss_pred             EEEeecCcc
Q psy12210        200 TLRISENSF  208 (405)
Q Consensus       200 ~L~l~~N~l  208 (405)
                      .|++..+..
T Consensus       120 ~Ldl~n~~~  128 (260)
T KOG2739|consen  120 SLDLFNCSV  128 (260)
T ss_pred             hhhcccCCc
Confidence            666666553

>KOG2982|consensus

Probab=95.13  E-value=0.0047  Score=55.00  Aligned_cols=225  Identities=15%  Similarity=0.189  Sum_probs=122.9

Q ss_pred             ccEEEccCCCCCCCCcc-cc-cCCCCCcEEecCCCcceeec--ccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEE
Q psy12210        126 TTELRLEQNDITELPPK-AF-ANYKRLRRIDLSKNQISKVA--VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTL  201 (405)
Q Consensus       126 L~~L~L~~n~i~~l~~~-~~-~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L  201 (405)
                      +..+.+.++.|..+... .| ...++++++++.+|.|....  ..-+..++.|+.|+++.|++.......-....+|+.+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            44566667777766542 23 35678999999999987532  1235678999999999999874432221356789999


Q ss_pred             EeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCC
Q psy12210        202 RISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCP  281 (405)
Q Consensus       202 ~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (405)
                      -+.+..+.-.|-    +..+...+       .....++..+....+..+.- |...        ++              
T Consensus       127 VLNgT~L~w~~~----~s~l~~lP-------~vtelHmS~N~~rq~n~Dd~-c~e~--------~s--------------  172 (418)
T KOG2982|consen  127 VLNGTGLSWTQS----TSSLDDLP-------KVTELHMSDNSLRQLNLDDN-CIED--------WS--------------  172 (418)
T ss_pred             EEcCCCCChhhh----hhhhhcch-------hhhhhhhccchhhhhccccc-cccc--------cc--------------
Confidence            998876542111    00010000       01111111111111111100 0000        00              


Q ss_pred             CCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEe
Q psy12210        282 VEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRL  359 (405)
Q Consensus       282 i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L  359 (405)
                         ..-.......|       +..+..+.|++.    ..||++..+-+. +.++....       ...+..++. .-|+|
T Consensus       173 ---~~v~tlh~~~c-------~~~~w~~~~~l~----r~Fpnv~sv~v~e~PlK~~s~-------ek~se~~p~~~~LnL  231 (418)
T KOG2982|consen  173 ---TEVLTLHQLPC-------LEQLWLNKNKLS----RIFPNVNSVFVCEGPLKTESS-------EKGSEPFPSLSCLNL  231 (418)
T ss_pred             ---hhhhhhhcCCc-------HHHHHHHHHhHH----hhcccchheeeecCcccchhh-------cccCCCCCcchhhhh
Confidence               00000000000       111222223332    346788888888 87777651       234566777 88999


Q ss_pred             cCCCCcccCc-ccccCCccCceeecccCCCcccChh------hcCCCccccCC
Q psy12210        360 EQNDITELPP-KAFANYKRLRRIRLEQNDITELPPK------AFANYKRLRRM  405 (405)
Q Consensus       360 ~~N~i~~i~~-~~~~~l~~L~~L~L~~N~l~~i~~~------~f~~l~~L~~L  405 (405)
                      +.|+|.+... +++.+++.|+.|.+++|.+.+--..      .++.|+++++|
T Consensus       232 ~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vL  284 (418)
T KOG2982|consen  232 GANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVL  284 (418)
T ss_pred             cccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEe
Confidence            9999997753 5688999999999999987653321      24456665543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.93  E-value=0.018  Score=29.98  Aligned_cols=15  Identities=33%  Similarity=0.612  Sum_probs=7.3

Q ss_pred             CcEEecCCCcceeec
Q psy12210        150 LRRIDLSKNQISKVA  164 (405)
Q Consensus       150 L~~L~ls~n~l~~~~  164 (405)
                      |++|++++|.++.++
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            445555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3665|consensus

Probab=94.78  E-value=0.039  Score=56.52  Aligned_cols=83  Identities=23%  Similarity=0.269  Sum_probs=56.0

Q ss_pred             CCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcc-cChhhhhcccCCcEE
Q psy12210        124 EATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTL  201 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~f~~l~~L~~L  201 (405)
                      ++|+.|.+++-.+..-.- ....++++|..||+|+..++.+  ...+.+++|+.|.+.+=.+.. -.-..+-.+++|+.|
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            578888888766654331 2345678888888888888877  447778888888776655553 212223448888888


Q ss_pred             EeecCcc
Q psy12210        202 RISENSF  208 (405)
Q Consensus       202 ~l~~N~l  208 (405)
                      |++....
T Consensus       226 DIS~~~~  232 (699)
T KOG3665|consen  226 DISRDKN  232 (699)
T ss_pred             ecccccc
Confidence            8887653

>KOG3665|consensus

Probab=94.35  E-value=0.027  Score=57.70  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCcccC------hhhhhccc
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLTYLP------DGVFAELF  196 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~------~~~f~~l~  196 (405)
                      ++|..||++++.++.+..  ++++++|+.|.+.+=.+..-. -..+-.+++|+.||++......-+      -+....+|
T Consensus       173 pNL~sLDIS~TnI~nl~G--IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp  250 (699)
T KOG3665|consen  173 PNLRSLDISGTNISNLSG--ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP  250 (699)
T ss_pred             CccceeecCCCCccCcHH--HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence            589999999999999953  789999999988876665421 134667999999999888654333      12234688


Q ss_pred             CCcEEEeecCccc
Q psy12210        197 RLRTLRISENSFI  209 (405)
Q Consensus       197 ~L~~L~l~~N~l~  209 (405)
                      .|+.||.++..+.
T Consensus       251 eLrfLDcSgTdi~  263 (699)
T KOG3665|consen  251 ELRFLDCSGTDIN  263 (699)
T ss_pred             cccEEecCCcchh
Confidence            9999999987654

>KOG2739|consensus

Probab=94.35  E-value=0.03  Score=49.02  Aligned_cols=80  Identities=28%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             CCccEEEccCC--CCCC-CCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCcccC---hhhhhccc
Q psy12210        124 EATTELRLEQN--DITE-LPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLTYLP---DGVFAELF  196 (405)
Q Consensus       124 ~~L~~L~L~~n--~i~~-l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~---~~~f~~l~  196 (405)
                      ++|+.|.++.|  ++.. ++. ...++++|+.+++++|+++.+. ...+..+.+|..|++.+|..+.+.   ...|.-++
T Consensus        65 p~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             chhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            48999999999  5553 333 2456699999999999998532 134667788889999998766554   57788888


Q ss_pred             CCcEEEee
Q psy12210        197 RLRTLRIS  204 (405)
Q Consensus       197 ~L~~L~l~  204 (405)
                      +|..++-.
T Consensus       144 ~L~~LD~~  151 (260)
T KOG2739|consen  144 SLKYLDGC  151 (260)
T ss_pred             hhcccccc
Confidence            88888643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.27  E-value=0.045  Score=29.72  Aligned_cols=23  Identities=48%  Similarity=0.775  Sum_probs=16.8

Q ss_pred             CCCCCEEEccCCcCcccChhhhh
Q psy12210        171 LKSLTSLTLNNNNLTYLPDGVFA  193 (405)
Q Consensus       171 l~~L~~L~l~~n~l~~l~~~~f~  193 (405)
                      +++|+.|++++|.|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677788888888888777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.27  E-value=0.045  Score=29.72  Aligned_cols=23  Identities=48%  Similarity=0.775  Sum_probs=16.8

Q ss_pred             CCCCCEEEccCCcCcccChhhhh
Q psy12210        171 LKSLTSLTLNNNNLTYLPDGVFA  193 (405)
Q Consensus       171 l~~L~~L~l~~n~l~~l~~~~f~  193 (405)
                      +++|+.|++++|.|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            35677788888888888777664

>KOG2120|consensus

Probab=94.11  E-value=0.00058  Score=60.59  Aligned_cols=83  Identities=18%  Similarity=0.150  Sum_probs=44.0

Q ss_pred             CccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc-CcccCh-hhhhcccCCcEE
Q psy12210        125 ATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN-LTYLPD-GVFAELFRLRTL  201 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~-~~f~~l~~L~~L  201 (405)
                      .++.+||+...|+.-.- ..++.+++|+.|.+.++++..-....+..-.+|+.|+++.+. ++.-.. -.|..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46666666665553221 234555666666666666655444445555666666665554 443221 124455566666


Q ss_pred             EeecCc
Q psy12210        202 RISENS  207 (405)
Q Consensus       202 ~l~~N~  207 (405)
                      +++++-
T Consensus       266 NlsWc~  271 (419)
T KOG2120|consen  266 NLSWCF  271 (419)
T ss_pred             CchHhh
Confidence            665543

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.23  E-value=0.079  Score=29.40  Aligned_cols=28  Identities=50%  Similarity=1.144  Sum_probs=22.4

Q ss_pred             CCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210        294 SCPHPCRCADGIVDCREKGLNKVPILLP  321 (405)
Q Consensus       294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~~  321 (405)
                      .||..|.|...++++++-+|+++|..+|
T Consensus         1 ~CP~~C~C~~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCSGLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEETTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEecCCEeECCCCCCCccCCCCc
Confidence            3789999999999999999999997653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=92.66  E-value=0.16  Score=29.38  Aligned_cols=30  Identities=50%  Similarity=1.167  Sum_probs=26.8

Q ss_pred             CCCCccccCceeecCCCCCCcCCCCCCCCc
Q psy12210        295 CPHPCRCADGIVDCREKGLNKVPILLPEAT  324 (405)
Q Consensus       295 ~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l  324 (405)
                      ||.+|.|.-..+++++.+|+.+|..++...
T Consensus         2 CP~~C~C~~~~V~C~~~~L~~vP~~iP~~t   31 (33)
T smart00013        2 CPAPCNCSGTAVDCSGRGLTEVPLDLPPDT   31 (33)
T ss_pred             cCCCCEECCCEeEeCCCCcCccCCCCCccc
Confidence            899999999999999999999998887543

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=91.85  E-value=0.091  Score=33.85  Aligned_cols=47  Identities=40%  Similarity=0.915  Sum_probs=31.4

Q ss_pred             CccccccCchHHHHHHhhcCC--CCCccccCCCCCCCCCcccccCCCccc
Q psy12210        206 NSFICDCHLSWLHRWLKRYPR--LGLYTKCFAPSHIKGQNILDIPEHEFK  253 (405)
Q Consensus       206 N~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~~~~~  253 (405)
                      |++.|+|.+.|+..|+.....  ......|..+..+. ..+.++....+.
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~   49 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFK   49 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCC
Confidence            789999999999999877322  12346677777666 445555544443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=87.33  E-value=0.44  Score=25.87  Aligned_cols=19  Identities=26%  Similarity=0.450  Sum_probs=15.1

Q ss_pred             CccCceeecccCCCcccCh
Q psy12210        375 YKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       375 l~~L~~L~L~~N~l~~i~~  393 (405)
                      +.+|+.|+|++|+|+.|..
T Consensus         1 L~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        1 LTNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CCccCEEECCCCccceecC
Confidence            3678999999999887753

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.59  E-value=0.6  Score=25.26  Aligned_cols=18  Identities=28%  Similarity=0.619  Sum_probs=15.9

Q ss_pred             ccCceeecccCCCcccCh
Q psy12210        376 KRLRRIRLEQNDITELPP  393 (405)
Q Consensus       376 ~~L~~L~L~~N~l~~i~~  393 (405)
                      ++|+.|++++|+|+++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            578999999999999985

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.07  E-value=0.14  Score=27.15  Aligned_cols=19  Identities=26%  Similarity=0.347  Sum_probs=10.7

Q ss_pred             CccCceeecccCCCcccCh
Q psy12210        375 YKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       375 l~~L~~L~L~~N~l~~i~~  393 (405)
                      +++|+.|+|++|+|++...
T Consensus         1 ~~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHH
Confidence            3567777777777665443

...

>KOG3864|consensus

Probab=83.32  E-value=0.31  Score=41.25  Aligned_cols=93  Identities=14%  Similarity=0.137  Sum_probs=68.3

Q ss_pred             CCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc------ceeecccccCCCCCCCEEEccCC
Q psy12210        111 REKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ------ISKVAVDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       111 ~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~------l~~~~~~~~~~l~~L~~L~l~~n  182 (405)
                      ++|+.-+.|....  ..++.++-++..|..+.-..+..++.++.|.+.++.      +..+.+    ..++|+.|++++|
T Consensus        86 d~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC  161 (221)
T KOG3864|consen   86 DYNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGC  161 (221)
T ss_pred             cccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCC
Confidence            4454445554322  357788999999998887778888888888887763      222221    3478999999988


Q ss_pred             c-CcccChhhhhcccCCcEEEeecCc
Q psy12210        183 N-LTYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       183 ~-l~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      . |++-.-..+..+++|+.|.+.+-+
T Consensus       162 ~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  162 PRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             CeechhHHHHHHHhhhhHHHHhcCch
Confidence            6 888887788889999999887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		4e-30
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		1e-14
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		5e-30
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		1e-14
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		6e-21
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		3e-07
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		7e-20
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		1e-06
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-14
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		7e-08
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-14
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		9e-08
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-14
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		7e-08
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		5e-14
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		3e-05
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-13
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		3e-06
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		4e-13
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		3e-06
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		5e-12
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		8e-11
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		8e-04
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-10
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-10
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-10
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		5e-04
3rez_A	129	Glycoprotein Gpib Variant Length = 129		5e-10
3rez_A	129	Glycoprotein Gpib Variant Length = 129		3e-04
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		4e-09
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		4e-09
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		6e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-08
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-08
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		3e-08
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		3e-08
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-08
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-08
3rfe_A	130	Crystal Structure Of Glycoprotein Gpib Ectodomain L		1e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		3e-07
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		5e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-06
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		2e-06
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-06
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		3e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		5e-06
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		9e-04
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		7e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		7e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		7e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		7e-05
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		9e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-04
4ay9_X	350	Structure Of Follicle-Stimulating Hormone In Comple		2e-04
1xwd_C	252	Crystal Structure Of Human Follicle Stimulating Hor		3e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		3e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		3e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		3e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		4e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		4e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		4e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		4e-04

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 98/207 (47%), Gaps = 48/207 (23%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C++ IVDCR KGL ++P  LPE  TE+RLEQN I  +PP AF+ YK+LRRIDLS
Sbjct: 5   CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS 64
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP---------------------------- 188
            NQIS++A DAFQGL+              LP                            
Sbjct: 65  NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAF 124
Query: 189 --------------------DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLG 228
                                G F+ L  ++T+ +++N FICDCHL WL  +L   P   
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIET 184
Query: 229 LYTKCFAPSHIKGQNILDIPEHEFKCS 255
              +C +P  +  + I  I   +F+CS
Sbjct: 185 SGARCTSPRRLANKRIGQIKSKKFRCS 211

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 54/111 (48%), Gaps = 30/111 (27%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C++ IVDCR KGL ++P  LPE  TE+                           
Sbjct: 5   CPAACTCSNNIVDCRGKGLTEIPTNLPETITEI--------------------------- 37
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              RLEQN I  +PP AF+ YK+LRRI L  N I+EL P AF   + L  +
Sbjct: 38  ---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 98/207 (47%), Gaps = 48/207 (23%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C++ IVDCR KGL ++P  LPE  TE+RLEQN I  +PP AF+ YK+LRRIDLS
Sbjct: 5   CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS 64
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP---------------------------- 188
            NQIS++A DAFQGL+              LP                            
Sbjct: 65  NNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124
Query: 189 --------------------DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLG 228
                                G F+ L  ++T+ +++N FICDCHL WL  +L   P   
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIET 184
Query: 229 LYTKCFAPSHIKGQNILDIPEHEFKCS 255
              +C +P  +  + I  I   +F+CS
Sbjct: 185 SGARCTSPRRLANKRIGQIKSKKFRCS 211

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 54/111 (48%), Gaps = 30/111 (27%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C++ IVDCR KGL ++P  LPE  TE+                           
Sbjct: 5   CPAACTCSNNIVDCRGKGLTEIPTNLPETITEI--------------------------- 37
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              RLEQN I  +PP AF+ YK+LRRI L  N I+EL P AF   + L  +
Sbjct: 38  ---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 25/189 (13%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTEL-------------------------RL 131
           CP  C C    VDC  +GL ++P  +P  TTEL                          L
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61
Query: 132 EQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGV 191
           ++N +T + P AF     ++ + L +N+I +++   F GL               +  G 
Sbjct: 62  KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
           F  L  L +L ++ N F C+CHL+W   WL++    G   +C APS ++   I D+P  E
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181
Query: 252 FKCSGSSME 260
           FKCS  + E
Sbjct: 182 FKCSSENSE 190

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVS-IDRVDKVLLYSYISNNFKRWT 353
           CP  C C    VDC  +GL ++P  +P  TTEL    + + R+    L+  + +  K   
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVK--- 58
Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
                L++N +T + P AF     ++ ++L +N I E+  K F    +L+ +
Sbjct: 59  ---LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 95.1 bits (235), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C D +V C  KGL  +P  +P   TEL L+ N  T L PK  +NYK L  IDLS
Sbjct: 4   CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLS 62
Query: 157 KNQISKVAVDAFQ------------------------GLKXXXXXXXXXXXXXYLPDGVF 192
            N+IS ++  +F                         GLK              +P+G F
Sbjct: 63  NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122
Query: 193 AELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF 252
            +L  L  L I  N   CDC++ WL  W+K   +     +C  P  +  + +L  P  +F
Sbjct: 123 NDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKF 182
Query: 253 KC 254
            C
Sbjct: 183 TC 184

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C D +V C  KGL  +P  +P   TEL     +D     L+   +S N+K  T 
Sbjct: 4   CPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELY----LDGNQFTLVPKELS-NYKHLT- 57
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
               L  N I+ L  ++F+N  +L  + L  N +  +PP+ F   K LR +
Sbjct: 58  -LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           +CP  C C+   VDC  K L  VP  +P  T  L L  N IT+L P  F    +L R+DL
Sbjct: 2   ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDL 61
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCH-L 214
             NQ++ +    F  L               +P G F  L  L  + +  N + C C  +
Sbjct: 62  DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
            +L RW+ ++P L                 L++     +CSG++   R+
Sbjct: 122 LYLSRWISQHPGLVF-------------GYLNLDPDSARCSGTNTPVRA 157

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
           +CP  C C+   VDC  K L  VP  +P  TT++ Y+   +++ K+         F R T
Sbjct: 2   ACPSQCSCSGTTVDCSGKSLASVPTGIP-TTTQVLYLYD-NQITKL-----EPGVFDRLT 54
Query: 354 NRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
             +R  L+ N +T LP   F    +L ++ L  N +  +P  AF N K L  +
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 72/173 (41%), Gaps = 14/173 (8%)
Query: 92  AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLR 151
           A   +CP  C C+   VDC  K L  VP  +P  T  L L  N IT+L P  F    +L 
Sbjct: 6   ARGSACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLT 65
Query: 152 RIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICD 211
           R+DL  NQ++ +    F  L               +P G F  L  L  + +  N + C 
Sbjct: 66  RLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 125
Query: 212 CH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
           C  + +L RW+ ++P L                 L++     +CSG++   R+
Sbjct: 126 CSDILYLSRWISQHPGLVF-------------GYLNLDPDSARCSGTNTPVRA 165

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 290 AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNF 349
           A   +CP  C C+   VDC  K L  VP  +P  TT++ Y+   +++ K+         F
Sbjct: 6   ARGSACPSQCSCSGTTVDCSGKSLASVPTGIP-TTTQVLYLYD-NQITKLE-----PGVF 58
Query: 350 KRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
            R T  +R  L+ N +T LP   F    +L ++ L  N +  +P  AF N K L  +
Sbjct: 59  DRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 14/169 (8%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           +CP  C C+   VDC  K L  VP  +P  T  L L  N IT+L P  F    +L R+DL
Sbjct: 2   ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDL 61
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCH-L 214
             NQ++ +    F  L               +P G F  L  L  + +  N + C C  +
Sbjct: 62  DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDI 121
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
            +L RW+ ++P L                 L++     +CSG++   R+
Sbjct: 122 LYLSRWISQHPWLVF-------------GYLNLDHDSARCSGTNTPVRA 157

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
           +CP  C C+   VDC  K L  VP  +P  TT++ Y+   +R+ K+         F R T
Sbjct: 2   ACPSQCSCSGTTVDCSGKSLASVPTGIP-TTTQVLYLYD-NRITKL-----EPGVFDRLT 54
Query: 354 NRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
             +R  L+ N +T LP   F    +L ++ L  N +  +P  AF N + L  +
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 81/208 (38%), Gaps = 49/208 (23%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKA-FANYKRLRRID 154
           +CP  CRC    VDC  + LNK+P  +P+ T ELRL  N+ T L     F    +LR+I+
Sbjct: 4   ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISEN-------- 206
            S N+I+ +   AF+G                +   +F  L  L+TL +  N        
Sbjct: 64  FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123
Query: 207 SFI----------------------------------------CDCHLSWLHRWLKRYPR 226
           SFI                                        C+C+L+WL  WL++   
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI 183
Query: 227 LGLYTKCFAPSHIKGQNILDIPEHEFKC 254
           +    +C  P  +K   I D+   +F C
Sbjct: 184 VTGNPRCQKPYFLKEIPIQDVAIQDFTC 211

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
           +CP  CRC    VDC  + LNK+P  +P+ T EL     ++  +  +L +  +  FK+  
Sbjct: 4   ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAEL----RLNNNEFTVLEA--TGIFKKLP 57
Query: 354 N-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
             R      N IT++   AF     +  I L  N +  +  K F   + L+ +
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 72/181 (39%), Gaps = 19/181 (10%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   + C  KGL  VP  +P + T L LE N +  LP   F    +L ++ LS
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF-------- 208
           +NQI  +    F  L               LP+GVF +L +L+ L +  N          
Sbjct: 61  QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120
Query: 209 --ICDCHLSWLHR--WLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264
             +      WLH   W    PR+   ++    +  K Q          KCSGS    RS 
Sbjct: 121 DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG-------SAKCSGSGKPVRSI 173
Query: 265 I 265
           I
Sbjct: 174 I 174

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C+   + C  KGL  VP  +P + T L        ++   L S     F + T 
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL-------ELESNKLQSLPHGVFDKLTQ 53
Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
            ++  L QN I  LP   F    +L  + L +N +  LP   F    +L+ +
Sbjct: 54  LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           +CP  C C+   V+C+E+ L  VP  +P  T  L L  N IT+L P  F +  +L  ++L
Sbjct: 12  ACPSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNL 71
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCH-L 214
           + NQ++ + V  F  L               +P GVF  L  L  + +  N + C+C  +
Sbjct: 72  AVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDI 131
Query: 215 SWLHRWLKRYPRL 227
            +L  W+ ++  +
Sbjct: 132 LYLKNWIVQHASI 144

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTEL-TYMVSIDRVDKVLLYSYISNNFKRW 352
           +CP  C C+   V+C+E+ L  VP  +P  T  L  Y+  I +++  +  S     +   
Sbjct: 12  ACPSQCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTY--- 68
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
                 L  N +T LP   F    +L  + L  N +  +P   F N K L  +
Sbjct: 69  ----LNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHI 117

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL +  N   E+ P +F     L+++ +  +Q+S +  +AF GL               L
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY--PRLGLYTKCFAPSHIKGQNIL 245
           P  +F  L  L  L +  N + CDC + WL  WL+ Y         +C AP H++G+ ++
Sbjct: 282 PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLV 341
Query: 246 DIPEHEFKCSG 256
           ++ +  F+CS 
Sbjct: 342 EVDQASFQCSA 352

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           +CP  C C+   VDCR K    VP  +P     L L  N IT+L P  F +   L+ + L
Sbjct: 12  ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYL 71
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLS 215
             NQ+  + V  F  L               LP  VF  L  L+ L      F+C   L+
Sbjct: 72  GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL------FMCCNKLT 125
Query: 216 WLHRWLKRYPRL 227
            L R ++R   L
Sbjct: 126 ELPRGIERLTHL 137

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM--VSIDRVDKVLLYSYISNNFKR 351
           +CP  C C+   VDCR K    VP  +P    ++ Y+    I +++  +  S I  N K 
Sbjct: 12  ACPSQCSCSGTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLI--NLKE 68
Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
                  L  N +  LP   F +  +L  + L  N +T LP   F     L+ +
Sbjct: 69  L-----YLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 8/162 (4%)
Query: 105 DGIVDCREKGLNKVPIL-LPEATTELRLEQ-----NDITELPPKAFANYKRLRRIDLSKN 158
           +G+V+ R   L    +  +P  T  +RLE+     N +  + P +F     LR++ L   
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
           Q++ +  +AF  LK              LP  +F  L RL  + ++ N + C+C + WL 
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLS 272
Query: 219 RWLKRY--PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSS 258
            WLK           +C AP+ +KG+ I ++ +  F C   +
Sbjct: 273 WWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAGT 314

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 105 DGIVDCREKGLNKVPIL-LPEATTELRLEQ-----NDITELPPKAFANYKRLRRIDLSKN 158
           +G+V+ R   L    +  +P  T  +RLE+     N +  + P +F     LR++ L   
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
           Q++ +  +AF  LK              LP  +F  L RL  + ++ N + C+C + WL 
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLS 272
Query: 219 RWLKRY--PRLGLYTKCFAPSHIKGQNILDIPEHEFKC 254
            WLK           +C AP+ +KG+ I ++ +  F C
Sbjct: 273 WWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 49/112 (43%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   V+C  +G   VP  +P  TT L LE N +  LP   F     L ++ L 
Sbjct: 1   CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG 60
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
            N++  +    F  L               LP+GVF +L +L+ L ++ N  
Sbjct: 61  GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C+   V+C  +G   VP  +P  TT L        ++   L S  +  F   T+
Sbjct: 1   CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYL-------DLETNSLKSLPNGVFDELTS 53
Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
            ++  L  N +  LP   F     L  + L  N +  LP   F    +L+ +
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105

>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant Length = 129

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 64/161 (39%), Gaps = 51/161 (31%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP PC CA  +VDC  +GL  +P  LP  TTEL L  N++T +PP AF +  +LR   L 
Sbjct: 4   CPAPCSCAGTLVDCGRRGLTALPA-LPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLG 62
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSW 216
            N                                                 + CDC L++
Sbjct: 63  ANP------------------------------------------------WRCDCSLTY 74
Query: 217 LHRWLKRYPRLGLY--TKCFAPSHIKGQNILDIPEHEFKCS 255
           L  WL+  P    Y   +C AP  ++G+ +  + E E + +
Sbjct: 75  LRLWLEDRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAA 115

>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant Length = 129

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 31/92 (33%)
Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP PC CA  +VDC  +GL  +P  LP  TTEL                           
Sbjct: 4   CPAPCSCAGTLVDCGRRGLTALPA-LPARTTELV-------------------------- 36
Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
               L  N++T +PP AF +  +LR   L  N
Sbjct: 37  ----LTGNNLTSVPPGAFDHLPQLRTAHLGAN 64

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 118/311 (37%), Gaps = 69/311 (22%)
Query: 95  PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
           P CP  C+C   +V C + GL KVP  LP  T  L L+ N ITE+    F N K L  + 
Sbjct: 23  PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHL 214
           L  N+ISK++                         G FA L +L  L +S+N        
Sbjct: 83  LINNKISKIS------------------------PGAFAPLVKLERLYLSKNQ------- 111
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF-KCSGSSMETRSKIYREECSTD 273
                 LK  P              K    L + E+E  K   S     +++   E  T+
Sbjct: 112 ------LKELPE----------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 274 FHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVS- 332
             P  S  +E    +   + S     R AD         +  +P  LP + TEL    + 
Sbjct: 156 --PLKSSGIENGAFQGMKKLSY---IRIAD-------TNITTIPQGLPPSLTELHLDGNK 203
Query: 333 IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392
           I +VD   L     NN  +       L  N I+ +   + AN   LR + L  N + ++ 
Sbjct: 204 ITKVDAASLKGL--NNLAKLG-----LSFNSISAVDNGSLANTPHLRELHLNNNKLVKV- 255
Query: 393 PKAFANYKRLR 403
           P   A++K ++
Sbjct: 256 PGGLADHKYIQ 266

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 30/113 (26%)
Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
           P CP  C+C   +V C + GL KVP  LP  T  L                         
Sbjct: 23  PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD------------------------ 58
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
                 L+ N ITE+    F N K L  + L  N I+++ P AFA   +L R+
Sbjct: 59  ------LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 118/311 (37%), Gaps = 69/311 (22%)
Query: 95  PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
           P CP  C+C   +V C + GL KVP  LP  T  L L+ N ITE+    F N K L  + 
Sbjct: 23  PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 82
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHL 214
           L  N+ISK++                         G FA L +L  L +S+N        
Sbjct: 83  LINNKISKIS------------------------PGAFAPLVKLERLYLSKNQ------- 111
Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF-KCSGSSMETRSKIYREECSTD 273
                 LK  P              K    L + E+E  K   S     +++   E  T+
Sbjct: 112 ------LKELPE----------KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155
Query: 274 FHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVS- 332
             P  S  +E    +   + S     R AD         +  +P  LP + TEL    + 
Sbjct: 156 --PLKSSGIENGAFQGMKKLSY---IRIAD-------TNITTIPQGLPPSLTELHLDGNK 203
Query: 333 IDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392
           I +VD   L     NN  +       L  N I+ +   + AN   LR + L  N + ++ 
Sbjct: 204 ITKVDAASLKGL--NNLAKLG-----LSFNSISAVDNGSLANTPHLRELHLNNNKLVKV- 255
Query: 393 PKAFANYKRLR 403
           P   A++K ++
Sbjct: 256 PGGLADHKYIQ 266

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 30/113 (26%)
Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
           P CP  C+C   +V C + GL KVP  LP  T  L                         
Sbjct: 23  PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLD------------------------ 58
Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
                 L+ N ITE+    F N K L  + L  N I+++ P AFA   +L R+
Sbjct: 59  ------LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
            CP  C C   +V+C+   L  VP  +P     L L  N IT+L P  F +   L+++  
Sbjct: 5   GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF 64
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDC-HL 214
           + N+++ +    F  L               +P G F  L  L  + +  N + C+C  +
Sbjct: 65  NSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124
Query: 215 SWLHRWLKRYPRL 227
            +L  W+  +  +
Sbjct: 125 MYLRNWVADHTSI 137

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 49/108 (45%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
           C      VDC  K L  +P  +P  T +L L+ N ++ LP KAF    +LR + L+ N++
Sbjct: 14  CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 161 SKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
             +    F+ LK              LP GVF +L  L  LR+  N  
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
           T L L  N++  LP   F     L+ + L  NQ+ +V   AF  L               
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 187 LPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL 245
           +P+G F  L +L+ L++ EN + C C+ + ++ +WLK+    GL     A     G+ +L
Sbjct: 196 VPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVL 255
Query: 246 DIPEHE 251
           +I E +
Sbjct: 256 EITEKD 261

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 115 LNKVPILLPEATT-ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKX 173
           L ++P L P     EL L  N ++ + P +F     L+++ + ++QI  +  +AF  L+ 
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256
Query: 174 XXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP--RLGLYT 231
                        LP  +F  L  L  + +  N + C+C + WL  W+K           
Sbjct: 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCA 316
Query: 232 KCFAPSHIKGQNILDIPEHEFKC 254
           +C  P ++KG+ I ++ ++ F C
Sbjct: 317 RCNTPPNLKGRYIGELDQNYFTC 339

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
           T L L  N I+ +P +AF     L R+ L +N+++ V   AF+ L               
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
           LP    A L  L+ LR+++N ++CDC    L  WL+++        C  P  + G+++  
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275
Query: 247 IPEHEFK 253
           +  ++ +
Sbjct: 276 LAANDLQ 282

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
           T L L  N I+ +P +AF     L R+ L +N+++ V   AF+ L               
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
           LP    A L  L+ LR+++N ++CDC    L  WL+++        C  P  + G+++  
Sbjct: 215 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 274
Query: 247 IPEHEFK 253
           +  ++ +
Sbjct: 275 LAANDLQ 281

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
           T L L  N I  +P  AF     L R+ L +N +++V   AF+ L               
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM 214
Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNI 244
           LP  V   L  L+ LR+++N ++CDC    L  WL+++        C  P  + G+++
Sbjct: 215 LPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLAGRDL 272

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 116/301 (38%), Gaps = 42/301 (13%)
Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF---- 60
           ++ N +  L D +F +L+ L++L + +N  +   H ++    L    +L L  KC     
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTL-EKCNLTSI 167
Query: 61  ---APSHIKGQ--------NILDIPEHEFKCSGPVEK------PTGECAAEPSCPHPCRC 103
              A SH+ G         NI  I ++ FK    ++       P  +    P+C +    
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNL 226
Query: 104 AD-GIVDCREKGLNKVPILLPEATTELR---LEQNDITELPPKAFANYKRLRRIDLSKNQ 159
               I  C    L  VP L       LR   L  N I+ +         RL+ I L   Q
Sbjct: 227 TSLSITHC---NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 160 ISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHLSWL-- 217
           ++ V   AF+GL               L + VF  +  L TL +  N   CDC L W+  
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFR 343
Query: 218 HRWLKRYPRLGLYTKCFAPSHIKGQNILDIPE----HEFKCSGSSMETR--SKIYREECS 271
            RW   + R      C  P  ++G+   D P+    + F C  + +  R   +++ +E  
Sbjct: 344 RRWRLNFNR--QQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGH 401
Query: 272 T 272
           T
Sbjct: 402 T 402

>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain Length = 130

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 59/163 (36%), Gaps = 52/163 (31%)
Query: 97  CPHPCRCADGIVDCREKGLN--KVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
           CP PC CA  +VDC  +GL    +P   P  TTEL L  N++T LPP             
Sbjct: 2   CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLL---------- 51
Query: 155 LSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFICDCHL 214
                      DA   L+                           T  +  N + CDC L
Sbjct: 52  -----------DALPALR---------------------------TAHLGANPWRCDCRL 73
Query: 215 SWLHRWLKRYPRLGLY--TKCFAPSHIKGQNILDIPEHEFKCS 255
             L  WL   P    Y   +C AP  ++G+ +  + E E + +
Sbjct: 74  VPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAA 116

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   + C  KGL  VP  +P + T L LE N +  LP   F    +L ++ LS
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 157 KNQIS 161
            N +S
Sbjct: 61  SNGLS 65

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 46/103 (44%)
Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C   +V C + GL  VP  +   TT L L+ NDI+EL    F   + L  + L 
Sbjct: 27  CPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV 86
Query: 157 KNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLR 199
            N+ISK+   AF  L+              +P  + + L  LR
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR 129

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 101 CRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
           C C +G   VDC+ K L+ VP  +P  T +L L+   +  L    F    +L  ++L  N
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
           Q+  ++   F  L               LP GVF  L +L  L +  N  
Sbjct: 70  QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 101 CRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
           C C +G   VDC+ K L+ VP  +P  T +L L+   +  L    F    +L  ++L  N
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69
Query: 159 QISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSF 208
           Q+  ++   F  L               LP GVF  L +L  L +  N  
Sbjct: 70  QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           +L L QN +  +  + F N  +L  +DLS N I  +   +F GL               +
Sbjct: 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Query: 188 PDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
           PDG+F  L  L+ + +  N + C C  + +L RWL +
Sbjct: 387 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 423

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
           T L L  N +  LP   F     L R+DL  NQ+  +    F  L               
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 187 LPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRL 227
           +PDGVF  L  L  + +  N + C C  + +L RW+ ++P L
Sbjct: 196 VPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPGL 237

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDG 190
           L ++ I  L    F+++  L ++ L++N+I+K+  +AF GL               +PDG
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDG 341
Query: 191 VFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
           +F  L  L+ + +  N + C C  + +L RWL +
Sbjct: 342 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 375

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 13/140 (9%)
Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXY 186
           T L L  N +  LP   F     L  +DLS NQ+  +    F  L               
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 187 LPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL 245
           +PDGVF  L  L+ + + +N + C C  + +L  W+ ++            S +   +  
Sbjct: 196 VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH------------SGVVRNSAG 243
Query: 246 DIPEHEFKCSGSSMETRSKI 265
            +     KCSGS    RS I
Sbjct: 244 SVAPDSAKCSGSGKPVRSII 263

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 43/115 (37%)
Query: 93  AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRR 152
              S    C  +  + DC    L +VP  LP   T L L  N +  LP   F  Y +L  
Sbjct: 4   GSASSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTS 63
Query: 153 IDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENS 207
           +D+  N ISK+  +  Q L               L D  FA    L  L +  NS
Sbjct: 64  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLP 188
           L LE N   E+P + F +   L+ IDL  N ++ +    F                  + 
Sbjct: 551 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 189 DGVFAELFR-LRTLRISENSFICDCH-LSWLHRWLK----RYPRLGLYTKCFAPSHIKG 241
             VF   FR L  L +  N F C C  ++W   W+       P L  +  C  P H  G
Sbjct: 611 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG 669

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 43/112 (38%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           S    C  +  + DC    L +VP  LP   T L L  N +  LP   F  Y +L  +D+
Sbjct: 2   SSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV 61
Query: 156 SKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENS 207
             N ISK+  +  Q L               L D  FA    L  L +  NS
Sbjct: 62  GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 42/107 (39%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
           C  +  + DC    L +VP  LP   T L L  N +  LP   F  Y +L  +D+  N I
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 161 SKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENS 207
           SK+  +  Q L               L D  FA    L  L +  NS
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ NQ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ NQ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ NQ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ NQ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDIT----ELPPKAFANYKRLR 151
           SCP  C CA  I+ C ++ L  VP  LP  T  L L  N+++    E  P    N   L 
Sbjct: 11  SCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTN---LH 67
Query: 152 RIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYLPDGVFAELFRLRTLRISENSFIC 210
            + LS N ++ ++ +AF  +               L + +F++L  L  L +  N  + 
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV 126

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 129 LRLEQNDITE-LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           L++  N   E   P  F   + L  +DLS+ Q+ +++  AF  L               +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 188 PDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
           PDG+F  L  L+ + +  N + C C  + +L RWL +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546

>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With The Entire Ectodomain Of Its Receptor Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 294 SCPH-PCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
            C H  C C++ +  C+E  + ++P  LP    EL ++++  RV +   +S   +  K  
Sbjct: 1   GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEK-- 58
Query: 353 TNRSRRLEQNDITE-LPPKAFANYKRLRRIRLEQ-NDITELPPKAFANYKRLRRM 405
                 + QND+ E +    F+N  +L  IR+E+ N++  + P+AF N   L+ +
Sbjct: 59  ----IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone Complexed With Its Receptor Length = 252

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 294 SCPH-PCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
            C H  C C++ +  C+E  + ++P  LP    EL ++++  RV +   +S   +  K  
Sbjct: 1   GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEK-- 58
Query: 353 TNRSRRLEQNDITE-LPPKAFANYKRLRRIRLEQ-NDITELPPKAFANYKRLRRM 405
                 + QND+ E +    F+N  +L  IR+E+ N++  + P+AF N   L+ +
Sbjct: 59  ----IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ N ++++      GL+              +
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 189 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 222

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ N ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ N ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ N ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ N ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKXXXXXXXXXXXXXYL 187
           EL L+ N++  LPP       +L ++ L+ N ++++      GL+              +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 188 PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           P G F     L    +  N ++C+C + +  RWL+
Sbjct: 188 PKGFFGS-HLLPFAFLHGNPWLCNCEILYFRRWLQ 221

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 28/63 (44%)
Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
           C     + DC    L  +P  LP   T L L  N +  LPP  F  Y +L  +D   N I
Sbjct: 2   CTVRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI 61
Query: 161 SKV 163
           SK+
Sbjct: 62  SKL 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-47
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-43
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-41
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-32
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-34
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-33
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-31
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-23
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-20
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-15
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-25
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	9e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  167 bits (425), Expect = 2e-47
 Identities = 77/335 (22%), Positives = 109/335 (32%), Gaps = 54/335 (16%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFA 61
           TL   NLT +P    + L  L  LR+     + I D     L+R          Y     
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 62  PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
           P+ + G N+  +                                 I  C    L  VP L
Sbjct: 218 PNCLYGLNLTSL--------------------------------SITHCN---LTAVPYL 242

Query: 122 LPEATTELR---LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLT 178
                  LR   L  N I+ +         RL+ I L   Q++ V   AF+GL  L  L 
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302

Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238
           ++ N LT L + VF  +  L TL +  N   CDC L W+ R   R         C  P  
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF 362

Query: 239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHP 298
           ++G+   D P+            R    R+  +          V      C A+   P P
Sbjct: 363 VQGKEFKDFPDVLLPN---YFTCRRARIRDRKAQQVFVDEGHTV---QFVCRAD-GDPPP 415

Query: 299 ----CRCADGIVDCREKGLNKVPILLPEATTELTY 329
                     +V  +  G   V    P+ T E+ Y
Sbjct: 416 AILWLSPRKHLVSAKSNGRLTV---FPDGTLEVRY 447

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  135 bits (342), Expect = 1e-35
 Identities = 42/114 (36%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 96  SCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
            CP  C C+     V C  K    VP  +P  T  L L +N I  L    FA++  L  +
Sbjct: 2   GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
           +L++N +S V   AF  L +L +L L +N L  +P GVF  L  L  L ISEN 
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  107 bits (269), Expect = 1e-25
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 2/119 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T+L + +N I  L    F +   L+ +++  N +  ++  AF GL SL  LTL   NLT 
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

Query: 187 LPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQN 243
           +P    + L  L  LR+     + I D     L+R          Y     P+ + G N
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 39/222 (17%), Positives = 70/222 (31%), Gaps = 66/222 (29%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW-LKRYPRL-GLYTKCFAP 62
            +      +P+G+  E    R L + +N       +  L++     +P L  L       
Sbjct: 18  CHRKRFVAVPEGIPTE---TRLLDLGKN------RIKTLNQDEFASFPHLEEL------- 61

Query: 63  SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
             +    +  +    F                                    L  +  L 
Sbjct: 62  -ELNENIVSAVEPGAF----------------------------------NNLFNLRTL- 85

Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
                   L  N +  +P   F     L ++D+S+N+I  +    FQ L +L SL + +N
Sbjct: 86  -------GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 183 NLTYLPDGVFAELFRLRTLRISEN--SFI---CDCHLSWLHR 219
           +L Y+    F+ L  L  L + +   + I      HL  L  
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 18/118 (15%)

Query: 294 SCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYIS----N 347
            CP  C C+     V C  K    VP  +P  T  L            L  + I     +
Sbjct: 2   GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLD-----------LGKNRIKTLNQD 50

Query: 348 NFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            F  + +     L +N ++ + P AF N   LR + L  N +  +P   F     L +
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            +   ++T +P  A  +   LR + L  N I+ +         RL+ 
Sbjct: 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L  N I+ +         RL+ I+L    +  + P AF     LR 
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 11/47 (23%), Positives = 25/47 (53%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            +  ND+  +  +AF+    L ++ LE+ ++T +P +A ++   L  
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           +L    +  + P AF     LR + +  N +T L    F +   L  
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            LE+ ++T +P +A ++   L  +RL   +I  +   +F    RL+ 
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV 204

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  151 bits (383), Expect = 6e-44
 Identities = 66/214 (30%), Positives = 94/214 (43%), Gaps = 48/214 (22%)

Query: 93  AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDI---------------- 136
               CP  C C++ IVDCR KGL ++P  LPE  TE+RLEQN I                
Sbjct: 1   GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60

Query: 137 --------TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
                   +EL P AF   + L  + L  N+I+++    F+GL SL  L LN N +  L 
Sbjct: 61  IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 189 DGVFAELFRLR------------------------TLRISENSFICDCHLSWLHRWLKRY 224
              F +L  L                         T+ +++N FICDCHL WL  +L   
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTN 180

Query: 225 PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSS 258
           P      +C +P  +  + I  I   +F+CS ++
Sbjct: 181 PIETSGARCTSPRRLANKRIGQIKSKKFRCSAAA 214

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 43/114 (37%), Positives = 53/114 (46%), Gaps = 30/114 (26%)

Query: 291 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFK 350
               CP  C C++ IVDCR KGL ++P  LPE  TE+                       
Sbjct: 1   GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEI----------------------- 37

Query: 351 RWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                  RLEQN I  +PP AF+ YK+LRRI L  N I+EL P AF   + L  
Sbjct: 38  -------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 84.7 bits (210), Expect = 3e-19
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L +N L  +  G F+ L  ++T+ +++N FICDCHL WL  +L   P      +C +P  
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRR 194

Query: 65  IKGQNILDIPEHEFKCSGPVEKPT 88
           +  + I  I   +F+CS       
Sbjct: 195 LANKRIGQIKSKKFRCSAAAHHHH 218

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  148 bits (375), Expect = 9e-43
 Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 49/210 (23%)

Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQND-------------------- 135
           +CP  CRC    VDC  + LNK+P  +P+ T ELRL  N+                    
Sbjct: 4   ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63

Query: 136 -----ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
                IT++   AF     +  I L+ N++  V    F+GL+SL +L L +N +T + + 
Sbjct: 64  FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123

Query: 191 VFAELFRLR------------------------TLRISENSFICDCHLSWLHRWLKRYPR 226
            F  L  +R                        TL +  N F C+C+L+WL  WL++   
Sbjct: 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI 183

Query: 227 LGLYTKCFAPSHIKGQNILDIPEHEFKCSG 256
           +    +C  P  +K   I D+   +F C  
Sbjct: 184 VTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 86.2 bits (214), Expect = 8e-20
 Identities = 25/84 (29%), Positives = 39/84 (46%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L +N +T +  G F  L  L TL +  N F C+C+L+WL  WL++   +    +C  P  
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195

Query: 65  IKGQNILDIPEHEFKCSGPVEKPT 88
           +K   I D+   +F C        
Sbjct: 196 LKEIPIQDVAIQDFTCDDAHHHHH 219

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.1 bits (185), Expect = 7e-16
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISN-----N 348
           +CP  CRC    VDC  + LNK+P  +P+ T EL            L  +  +       
Sbjct: 4   ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAEL-----------RLNNNEFTVLEATGI 52

Query: 349 FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           FK+    R      N IT++   AF     +  I L  N +  +  K F   + L+ 
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  147 bits (372), Expect = 1e-41
 Identities = 39/129 (30%), Positives = 67/129 (51%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L L  N I+ +P +AF     L R+ L +N+++ V   AF+ L  L +L L  NNL+ 
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
           LP    A L  L+ LR+++N ++CDC    L  WL+++        C  P  + G+++  
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR 275

Query: 247 IPEHEFKCS 255
           +  ++ +  
Sbjct: 276 LAANDLQGC 284

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  122 bits (307), Expect = 3e-32
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 4/114 (3%)

Query: 97  CPHPCRCADG---IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
           CP  C C +       C ++GL  VP+ +P A+  + L  N I+ +P  +F   + L  +
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNN-LTYLPDGVFAELFRLRTLRISEN 206
            L  N ++++   AF GL  L  L L++N  L  +    F  L RL TL +   
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 21/77 (27%), Positives = 39/77 (50%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L  NNL+ LP    A L  L+ LR+++N ++CDC    L  WL+++        C  P  
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 65  IKGQNILDIPEHEFKCS 81
           + G+++  +  ++ +  
Sbjct: 268 LAGRDLKRLAANDLQGC 284

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 3e-14
 Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 33/112 (29%)

Query: 295 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKR 351
           CP  C C +       C ++GL  VP+ +P A+  +                        
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRI------------------------ 37

Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
                  L  N I+ +P  +F   + L  + L  N +  +   AF     L 
Sbjct: 38  ------FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L  N I+ +P +AF     L R+ L QN +  + P AF +  RL  
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L+ N +  LP   F +   L  + L  N I+ +P +AF     L R
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L QN +  + P AF +  RL  + L  N+++ LP +A A  + L+ 
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  145 bits (367), Expect = 3e-39
 Identities = 43/131 (32%), Positives = 71/131 (54%), Gaps = 2/131 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL +  N   E+ P +F     L+++ +  +Q+S +  +AF GL SL  L L +NNL+ 
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY--TKCFAPSHIKGQNI 244
           LP  +F  L  L  L +  N + CDC + WL  WL+ Y         +C AP H++G+ +
Sbjct: 281 LPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYL 340

Query: 245 LDIPEHEFKCS 255
           +++ +  F+CS
Sbjct: 341 VEVDQASFQCS 351

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  132 bits (334), Expect = 1e-34
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 2/124 (1%)

Query: 87  PTGECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAF 144
                A   +CP  C C++    V C  +GL++VP  +P  T  L L +N+I  +    F
Sbjct: 36  AAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF 95

Query: 145 ANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204
            +   L  + L +N I ++ V AF GL SL +L L +N LT +P G F  L +LR L + 
Sbjct: 96  RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155

Query: 205 ENSF 208
            N  
Sbjct: 156 NNPI 159

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY--TKCFAP 62
           L +NNL+ LP  +F  L  L  L +  N + CDC + WL  WL+ Y         +C AP
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAP 332

Query: 63  SHIKGQNILDIPEHEFKCSGPV 84
            H++G+ ++++ +  F+CS P 
Sbjct: 333 MHMRGRYLVEVDQASFQCSAPF 354

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLNNNNLT 185
            EL L  N I  +P  AF     L R+DL +  ++  ++  AF+GL +L  L L   N+ 
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 186 YLPDGVFAELFRLRTLRISENSF 208
            +P+     L  L  L +S N F
Sbjct: 210 DMPN--LTPLVGLEELEMSGNHF 230

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 30/132 (22%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 285 PTGECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLY 342
                A   +CP  C C++    V C  +GL++VP  +P  T  L               
Sbjct: 36  AAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYL--------------- 80

Query: 343 SYISNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP 392
             +  N         F+   +    +L +N I ++   AF     L  + L  N +T +P
Sbjct: 81  -NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139

Query: 393 PKAFANYKRLRR 404
             AF    +LR 
Sbjct: 140 SGAFEYLSKLRE 151

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 8/46 (17%), Positives = 19/46 (41%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           +  N   E+ P +F     L+++ +  + ++ +   AF     L  
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 346 SNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
             +F   ++ +   +  + ++ +   AF     L  + L  N+++ LP   F   + L  
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L   +I ++P         L  + +  N   E+ P +F     L++
Sbjct: 202 NLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 360 EQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           E   +  +   AF     L+ + L   +I ++P         L  
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEE 222

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  141 bits (358), Expect = 3e-38
 Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL L  N ++ + P +F     L+++ + ++QI  +  +AF  L+SL  + L +NNLT 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT--KCFAPSHIKGQNI 244
           LP  +F  L  L  + +  N + C+C + WL  W+K           +C  P ++KG+ I
Sbjct: 270 LPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYI 329

Query: 245 LDIPEHEFKCS 255
            ++ ++ F C 
Sbjct: 330 GELDQNYFTCY 340

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  132 bits (333), Expect = 1e-34
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 90  ECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANY 147
           E  +  +CP  C C++    V C  K L +VP  +   T  L L +N I  +   +F + 
Sbjct: 28  ETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHL 87

Query: 148 KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
           + L  + LS+N I  + + AF GL +L +L L +N LT +P+G F  L +L+ L +  N 
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147

Query: 208 F 208
            
Sbjct: 148 I 148

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 90.6 bits (225), Expect = 5e-20
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT--KCFAP 62
           L +NNLT LP  +F  L  L  + +  N + C+C + WL  W+K           +C  P
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTP 321

Query: 63  SHIKGQNILDIPEHEFKCSGPV 84
            ++KG+ I ++ ++ F C  PV
Sbjct: 322 PNLKGRYIGELDQNYFTCYAPV 343

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 83.3 bits (206), Expect = 1e-17
 Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLNNNNLT 185
            EL L  N I  +P  AF     LRR+DL +  ++S ++  AF+GL +L  L L   NL 
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

Query: 186 YLPDGVFAELFRLRTLRISENSF 208
            +P+     L +L  L +S N  
Sbjct: 199 EIPN--LTPLIKLDELDLSGNHL 219

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 28/129 (21%)

Query: 288 ECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYI 345
           E  +  +CP  C C++    V C  K L +VP  +   T  L                 +
Sbjct: 28  ETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLL----------------NL 71

Query: 346 SNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395
             N         FK   +    +L +N I  +   AF     L  + L  N +T +P  A
Sbjct: 72  HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131

Query: 396 FANYKRLRR 404
           F    +L+ 
Sbjct: 132 FVYLSKLKE 140

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 346 SNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
             +F+   + +   + Q+ I  +   AF N + L  I L  N++T LP   F     L R
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L  N ++ + P +F     L+++ + Q+ I  +   AF N + L  
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L   ++ E+P        +L  + L  N ++ + P +F     L++
Sbjct: 191 NLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  130 bits (329), Expect = 3e-36
 Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 25/185 (13%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQND--------------------- 135
           CP  C C    VDC  +GL ++P  +P  TTEL L  N+                     
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61

Query: 136 ----ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV 191
               +T + P AF     ++ + L +N+I +++   F GL  L +L L +N ++ +  G 
Sbjct: 62  KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121

Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
           F  L  L +L ++ N F C+CHL+W   WL++    G   +C APS ++   I D+P  E
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

Query: 252 FKCSG 256
           FKCS 
Sbjct: 182 FKCSS 186

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 68.9 bits (169), Expect = 6e-14
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISN-----NF 349
           CP  C C    VDC  +GL ++P  +P  TTEL           +L  + +        F
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTEL-----------LLNDNELGRISSDGLF 50

Query: 350 KRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            R  +  +  L++N +T + P AF     ++ ++L +N I E+  K F    +L+ 
Sbjct: 51  GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 29/82 (35%), Positives = 44/82 (53%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
            L +N ++ +  G F  L  L +L ++ N F C+CHL+W   WL++    G   +C APS
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167

Query: 64  HIKGQNILDIPEHEFKCSGPVE 85
            ++   I D+P  EFKCS    
Sbjct: 168 KVRDVQIKDLPHSEFKCSSENS 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  131 bits (331), Expect = 4e-35
 Identities = 50/133 (37%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 77  EFKCSGPVEK--PTGECAAE-PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQ 133
           E    GP E      E     P CP  C+C   +V C + GL KVP  LP  T  L L+ 
Sbjct: 2   EASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN 61

Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
           N ITE+    F N K L  + L  N+ISK++  AF  L  L  L L+ N L  LP+ +  
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121

Query: 194 ELFRLRTLRISEN 206
               L+ LR+ EN
Sbjct: 122 ---TLQELRVHEN 131

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.7 bits (236), Expect = 6e-22
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           +  +P  LP + TEL L+ N IT++   +      L ++ LS N IS V   +      L
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
             L LNNN L  +P G  A+   ++ + +  N+ 
Sbjct: 243 RELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 4e-20
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV--DAFQGLK 172
           L ++P  +P+   ELR+ +N+IT++    F    ++  ++L  N +    +   AFQG+K
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
            L+ + + + N+T +P G+      L  L +  N 
Sbjct: 172 KLSYIRIADTNITTIPQGLPP---SLTELHLDGNK 203

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 29/146 (19%)

Query: 268 EECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTEL 327
           +E S      +   V +        P CP  C+C   +V C + GL KVP  LP  T  L
Sbjct: 1   DEASGIGPEEHFPEVPEIE---PMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL 57

Query: 328 TYMVSIDRVDKVLLYSYISNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKR 377
                            + NN         FK   N  +  L  N I+++ P AFA   +
Sbjct: 58  ----------------DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101

Query: 378 LRRIRLEQNDITELPPKAFANYKRLR 403
           L R+ L +N + ELP K     + LR
Sbjct: 102 LERLYLSKNQLKELPEKMPKTLQELR 127

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF------QGLKSLTSLTLN 180
            EL L  N + ++P    A++K ++ + L  N IS +  + F          S + ++L 
Sbjct: 243 RELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301

Query: 181 NNNLTY--LPDGVFAELFRLRTLRISEN 206
           +N + Y  +    F  ++    +++   
Sbjct: 302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 30/191 (15%), Positives = 56/191 (29%), Gaps = 50/191 (26%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFA 61
            + + N+T +P G+      L  L +  N  + +    L  L+  L    +LGL      
Sbjct: 177 RIADTNITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNN-LA---KLGLS----- 224

Query: 62  PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
                  +I  +                      + PH        +      L KVP  
Sbjct: 225 -----FNSISAVDNGSLA----------------NTPHLRE-----LHLNNNKLVKVPGG 258

Query: 122 LPEAT--TELRLEQNDITELPPKAFA------NYKRLRRIDLSKNQISKVAV--DAFQGL 171
           L +      + L  N+I+ +    F              + L  N +    +    F+ +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 172 KSLTSLTLNNN 182
               ++ L N 
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
            L+ N IT++   +      L ++ L  N I+ +   + AN   LR
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           R+   +IT +P     +   L  + L+ N IT++   +      L +
Sbjct: 177 RIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAK 220

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 359 LEQNDITE--LPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           L  N +    +   AF   K+L  IR+   +IT +P     +   L 
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH 198

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L  N I+ +   + AN   LR + L  N + ++P    A++K ++ 
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQV 267

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  130 bits (328), Expect = 9e-35
 Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 92  AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLR 151
                CP  C C   +V C + GL  VP  +   TT L L+ NDI+EL    F   + L 
Sbjct: 22  TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLY 81

Query: 152 RIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
            + L  N+ISK+   AF  L+ L  L ++ N+L  +P  + +    L  LRI +N 
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS---SLVELRIHDNR 134

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           L  +P  LPE   EL L+ N I  +  +    Y +L R+ L  NQI  +   +   L +L
Sbjct: 184 LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
             L L+NN L+ +P G   +L  L+ + +  N
Sbjct: 244 RELHLDNNKLSRVPAG-LPDLKLLQVVYLHTN 274

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             LR+ +  +T +P         L  + L  N+I  + ++       L  L L +N +  
Sbjct: 175 NYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231

Query: 187 LPDGVFAELFRLRTLRISENS 207
           + +G  + L  LR L +  N 
Sbjct: 232 IENGSLSFLPTLRELHLDNNK 252

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.1 bits (198), Expect = 7e-17
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV--DAFQGLK 172
           L ++P  LP +  ELR+  N I ++P   F+  + +  I++  N +        AF GLK
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173

Query: 173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
            L  L ++   LT +P  +      L  L +  N 
Sbjct: 174 -LNYLRISEAKLTGIPKDLPE---TLNELHLDHNK 204

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 30/115 (26%)

Query: 290 AAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNF 349
                CP  C C   +V C + GL  VP  +   TT L                      
Sbjct: 22  TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLD--------------------- 60

Query: 350 KRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                    L+ NDI+EL    F   + L  + L  N I+++  KAF+  ++L++
Sbjct: 61  ---------LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N I  +   + +    LR + L  N++S+V       LK L  + L+ NN+T 
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNNITK 278

Query: 187 LPDGVFAELF------RLRTLRISEN----------SFICDCHLSWLH 218
           +    F  +           + +  N          +F C      + 
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK------SLTSLTLN 180
            EL L+ N ++ +P     + K L+ + L  N I+KV V+ F  +           ++L 
Sbjct: 244 RELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

Query: 181 NNNLTY--LPDGVFAELFRLRTLRISEN 206
           NN + Y  +    F  +     ++    
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 115 LNKVPILLPEAT--TELRLEQNDITELPPKAFA------NYKRLRRIDLSKNQISKVAV- 165
           L++VP  LP+      + L  N+IT++    F              I L  N +    V 
Sbjct: 253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312

Query: 166 -DAFQGLKSLTSLTLNNN 182
              F+ +    ++   N 
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
            L+ N I  +  +    Y +L R+ L  N I  +   + +    LR
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 314 NKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN-FKRWTNRSRRLEQNDITELPPKAF 372
           N++  +     + L  M  I+     L  S      F        R+ +  +T +P    
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP 192

Query: 373 ANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                L  + L+ N I  +  +    Y +L R
Sbjct: 193 ET---LNELHLDHNKIQAIELEDLLRYSKLYR 221

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/157 (14%), Positives = 40/157 (25%), Gaps = 51/157 (32%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L +N +  + +G  + L  LR L +  N       LS +   L     L +        +
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNK------LSRVPAGLPDLKLLQVV-------Y 270

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
           +   NI  +  ++F                               C      K       
Sbjct: 271 LHTNNITKVGVNDF-------------------------------CPVGFGVKRAYY--- 296

Query: 125 ATTELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQ 159
               + L  N +   E+ P  F        I     +
Sbjct: 297 --NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L  N I  +   + +    LR + L+ N ++ +P     + K L+ 
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQV 268

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score =  124 bits (314), Expect = 3e-34
 Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 23/186 (12%)

Query: 95  PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITE---------------- 138
             CP  C C D +V C  KGL  +P  +P   TEL L+ N  T                 
Sbjct: 2   SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61

Query: 139 -------LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV 191
                  L  ++F+N  +L  + LS N++  +    F GLKSL  L+L+ N+++ +P+G 
Sbjct: 62  SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121

Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
           F +L  L  L I  N   CDC++ WL  W+K   +     +C  P  +  + +L  P  +
Sbjct: 122 FNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK 181

Query: 252 FKCSGS 257
           F C+ +
Sbjct: 182 FTCAAA 187

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 39/127 (30%), Positives = 50/127 (39%), Gaps = 17/127 (13%)

Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELT-YMVSIDRVDKV------LLYSYI 345
             CP  C C D +V C  KGL  +P  +P   TEL         V K       L    +
Sbjct: 2   SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL 61

Query: 346 SNN---------FKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395
           SNN         F   T      L  N +  +PP+ F   K LR + L  NDI+ +P  A
Sbjct: 62  SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121

Query: 396 FANYKRL 402
           F +   L
Sbjct: 122 FNDLSAL 128

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           +L+ N+++ +P+G F +L  L  L I  N   CDC++ WL  W+K   +     +C  P 
Sbjct: 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167

Query: 64  HIKGQNILDIPEHEFKCSGPVE 85
            +  + +L  P  +F C+    
Sbjct: 168 EMADKLLLTTPSKKFTCAAAHH 189

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  130 bits (329), Expect = 5e-34
 Identities = 62/385 (16%), Positives = 108/385 (28%), Gaps = 90/385 (23%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEAT------------------------------ 126
               C        C  +GL++VP L                                   
Sbjct: 4   GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ 63

Query: 127 ------------------TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV--D 166
                               L+L+ N   +L   AF     L  + L++  +    +  +
Sbjct: 64  QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN 123

Query: 167 AFQGLKSLTSLTLNNNNLTYL-PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP 225
            F+ L SL  L L +NN+  + P   F  + R   L ++ N     C    L+   K + 
Sbjct: 124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183

Query: 226 RLGLY--------------TKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECS 271
            L L                KC  P        LD+  + FK S +     +    +  S
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 272 TDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGI--VDCREKGLNKVPILLPEATTELTY 329
                  +              +       A G+   D  +  +  +   +    T+L  
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ 303

Query: 330 MVSIDRVDKVLLYSYISNN---------FKRWTN-RSRRLEQNDITELPPKAFANYKRLR 379
           +              ++ N         F   T+     L QN +  +  + F N  +L 
Sbjct: 304 L-------------TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350

Query: 380 RIRLEQNDITELPPKAFANYKRLRR 404
            + L  N I  L  ++F     L+ 
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKE 375

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  129 bits (325), Expect = 2e-33
 Identities = 46/222 (20%), Positives = 76/222 (34%), Gaps = 20/222 (9%)

Query: 5   LNNNNLTYL-PDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY------- 56
           L +NN+  + P   F  + R   L ++ N     C    L+   K +  L L        
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 57  -------TKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVD 109
                   KC  P        LD+  + FK S            +          +    
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 110 CREKGLNKVP-----ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
                           L         L ++ I  L    F+++  L ++ L++N+I+K+ 
Sbjct: 256 FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315

Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
            +AF GL  L  L L+ N L  +   +F  L +L  L +S N
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN 357

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  126 bits (318), Expect = 2e-33
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L L Q  + +L P AF +   L+ +++S N    +    ++ L SL  L  + N++  
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

Query: 187 LPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLY---TKCFAPSHIKGQ 242
                       L  L +++N F C C      +W+K   +L +     +C  PS  +G 
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297

Query: 243 NILDI 247
            +L +
Sbjct: 298 PVLSL 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  116 bits (293), Expect = 5e-30
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 3/112 (2%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   + C  KGL  VP  +P + T L LE N +  LP   F    +L ++ LS
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60

Query: 157 KNQISKVAV--DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
            N +S       +  G  SL  L L+ N +  +    F  L +L  L    +
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 111

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 127 TELRLEQNDITELPPK-AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN-L 184
             L  + +++ ++     F + + L  +D+S           F GL SL  L +  N+  
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 185 TYLPDGVFAELFRLRTLRISENSF 208
                 +F EL  L  L +S+   
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 5   LNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLY---TKCF 60
            + N++              L  L +++N F C C      +W+K   +L +     +C 
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289

Query: 61  APSHIKGQNILDI 73
            PS  +G  +L +
Sbjct: 290 TPSDKQGMPVLSL 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 32/111 (28%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C+   + C  KGL  VP  +P + T L                           
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL--------------------------- 33

Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT--ELPPKAFANYKRLR 403
               LE N +  LP   F    +L ++ L  N ++      ++      L+
Sbjct: 34  ---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L Q  + +L P AF +   L+ + +  N+   L    +     L+ 
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 5/41 (12%), Positives = 12/41 (29%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
            +  N+   L    +     L+ +    N I     +   +
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFI 35
           +++ +     +G+F  L  L  L+++ NSF 
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  126 bits (319), Expect = 2e-33
 Identities = 36/132 (27%), Positives = 48/132 (36%), Gaps = 5/132 (3%)

Query: 91  CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRL 150
             A  SC     C           LN +P  L EA   L L  N IT +          L
Sbjct: 24  NQASLSCDRNGIC-----KGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNL 78

Query: 151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC 210
           + + L+ N I+ +  D+F  L SL  L L+ N L+ L    F  L  L  L +  N +  
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT 138

Query: 211 DCHLSWLHRWLK 222
               S      K
Sbjct: 139 LGETSLFSHLTK 150

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.6 bits (220), Expect = 1e-19
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 5/102 (4%)

Query: 128 ELRLEQNDITELPPKAF---ANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
           +  L+    +EL              R + ++   + +V       +  L  L  + N L
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-KLLNQISGLLELEFSRNQL 289

Query: 185 TYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 225
             +PDG+F  L  L+ + +  N + C C  + +L RWL +  
Sbjct: 290 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 9/76 (11%), Positives = 29/76 (38%)

Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
              +  T++  K FA    L  +++  + +      + + +++++ L L+      L + 
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 191 VFAELFRLRTLRISEN 206
                  +  L + + 
Sbjct: 217 FVDVTSSVECLELRDT 232

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 21/116 (18%), Positives = 29/116 (25%), Gaps = 35/116 (30%)

Query: 289 CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN 348
             A  SC     C           LN +P  L EA   L                     
Sbjct: 24  NQASLSCDRNGIC-----KGSSGSLNSIPSGLTEAVKSL--------------------- 57

Query: 349 FKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                     L  N IT +          L+ + L  N I  +   +F++   L  
Sbjct: 58  ---------DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 51
            + N L  +PDG+F  L  L+ + +  N + C C  + +L RWL +  
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 5/47 (10%), Positives = 15/47 (31%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            ++ +D+    PK+  + + +  + L       L          +  
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 8/47 (17%), Positives = 21/47 (44%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
              +  T++  K FA    L  + ++ +D+    PK+  + + +  +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 350 KRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           K++T R+ ++    + ++          L  +   +N +  +P   F     L++
Sbjct: 252 KKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  126 bits (316), Expect = 5e-33
 Identities = 43/172 (25%), Positives = 58/172 (33%), Gaps = 7/172 (4%)

Query: 97  CPHPCRC-ADGIVDCREKGLNKVPILLPEAT--TELRLE-QNDITELPPKAFANYKRLRR 152
           CP  C       + C   G       LP A   TEL +E Q  +  L  +       LR 
Sbjct: 1   CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC 212
           + + K+ +  VA DAF     L+ L L+ N L  L       L  L+ L +S N   C C
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSC 119

Query: 213 HLSWLHRWLKRYPRLGLYTK--CFAPSHIKGQNILDIPEHEFKCSGSSMETR 262
            L WL RW +         K  C     +             K    +    
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVD 171

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 4e-11
 Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 28/111 (25%)

Query: 295 CPHPCRC-ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
           CP  C       + C   G       LP A                L   YI N      
Sbjct: 1   CPDACCPHGSSGLRCTRDGALDSLHHLPGAEN--------------LTELYIENQ----- 41

Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                     +  L  +       LR + + ++ +  + P AF    RL R
Sbjct: 42  --------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 23/86 (26%), Gaps = 6/86 (6%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L+ N L  L       L  L+ L +S N   C C L WL RW +                
Sbjct: 87  LSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLG-----GVPEQKL 140

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGE 90
                          C  P  K    
Sbjct: 141 QCHGQGPLAHMPNASCGVPTLKVQVP 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (321), Expect = 3e-32
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 2/116 (1%)

Query: 95  PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRR 152
           P   +PC     +    C ++ L+KVP  +P +T  + L  N +  L   +F+N+  L+ 
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQW 60

Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
           +DLS+ +I  +   A+ GL  L++L L  N +     G F+ L  L  L   E   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (299), Expect = 3e-29
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L L +  + ++    F    RL+ +++S N +  +    +  L SL++L  + N +  
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQ 242
               +      L    ++ NS  C C      +W+K        +   T C  P  +   
Sbjct: 536 SKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMT-CATPVEMNTS 594

Query: 243 NILDI 247
            +LD 
Sbjct: 595 LVLDF 599

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 64/230 (27%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW-LKRYPRLG-LYTKCFAP 62
             +  L+ +PD + +     + + +S N       L  L  +    +  L  L       
Sbjct: 18  CMDQKLSKVPDDIPSS---TKNIDLSFN------PLKILKSYSFSNFSELQWLD------ 62

Query: 63  SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
             +    I  I +  +                                   GL+ +    
Sbjct: 63  --LSRCEIETIEDKAW----------------------------------HGLHHL---- 82

Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
               + L L  N I    P +F+    L  +   + +++ +       L +L  L + +N
Sbjct: 83  ----SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 183 NLTYLP-DGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGL 229
            +        F+ L  L  + +S N    I    L +L    +    L +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.8 bits (192), Expect = 1e-15
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
             L L  N    +    F   + L+ +D   + + +V    AF  L+ L  L ++  N  
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 186 YLPDGVFAELFRLRTLRISENSFI 209
              DG+F  L  L TL+++ NSF 
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.5 bits (186), Expect = 6e-15
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 30/231 (12%)

Query: 5   LNNNNLTYLP-DGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYT---K 58
           + +N +        F+ L  L  + +S N    I    L +L    +    L +      
Sbjct: 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194

Query: 59  CFAPSHIKGQNI--LDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN 116
                  +G  +  L +  +    +         C    +  H  R   G      K   
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSN-----IMKTCLQNLAGLHVHRLILGEF----KDER 245

Query: 117 KVPILLPEA--------TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
            + I  P            E RL   +        F     +  + L+   I    ++  
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDV 303

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 219
                  SL++    L   P     +L  L++L ++ N          L  
Sbjct: 304 PKHFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFKKVALPS 351

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 127 TELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L  + + +  +    AF + ++L  +D+S           F GL SL +L +  N+  
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 186 Y-LPDGVFAELFRLRTLRISENSF 208
                 VFA    L  L +S+   
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQL 485

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 32/113 (28%)

Query: 293 PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFK 350
           P   +PC     +    C ++ L+KVP  +P +T  +                       
Sbjct: 1   PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNI----------------------- 37

Query: 351 RWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
                   L  N +  L   +F+N+  L+ + L + +I  +  KA+     L 
Sbjct: 38  -------DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT----SLTLNN 181
            +L +  N I     P  F+N   L  +DLS N I  + V+  Q L+       SL ++ 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 182 NNLTYLPDGVFAELFRLRTLRISENSFI 209
           N + ++ D  F  + +L  L +  N   
Sbjct: 191 NPIDFIQDQAFQGI-KLHELTLRGNFNS 217

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCF 60
            + N +      +      L    ++ NS  C C      +W+K        +   T C 
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMT-CA 586

Query: 61  APSHIKGQNILDI 73
            P  +    +LD 
Sbjct: 587 TPVEMNTSLVLDF 599

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 47/223 (21%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           ++ N + ++ D  F  + +L  L +  N    +   +                      +
Sbjct: 188 MSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT-------------------CLQN 227

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
           + G ++  +   EFK    +E               C             L        +
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFE-----PSIMEGLCDVTIDEFR-----LTYTNDFSDD 277

Query: 125 ATT--------ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS 176
                       + L    I  L         + + + + + Q+ +        L  L S
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLEDVPKHF--KWQSLSIIRCQLKQF---PTLDLPFLKS 332

Query: 177 LTLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWL 217
           LTL  N  +         L  L  L +S N  SF   C  S L
Sbjct: 333 LTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 35/208 (16%)

Query: 6   NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR-WLKRYPRLGLYTKCFAPSH 64
            N N + +       L  L   R+    F  + +L       ++      +    F  ++
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD--VTIDEFRLTY 270

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
               N       +F C   V                       +      +  +  +   
Sbjct: 271 T---NDFSDDIVKFHCLANVSA---------------------MSLAGVSIKYLEDVPKH 306

Query: 125 AT-TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
                L + +  + + P     +   L+ + L+ N+ S         L SL+ L L+ N 
Sbjct: 307 FKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNA 361

Query: 184 LTYLPDGVFAELF--RLRTLRISENSFI 209
           L++     +++L    LR L +S N  I
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ--GLKSLTSLTLNNNNL 184
             L L  N  +            L  +DLS+N +S     ++   G  SL  L L+ N  
Sbjct: 331 KSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 185 TYLPDGVFAELFRLRTLRISENSF 208
             +    F  L  L+ L    ++ 
Sbjct: 389 IIMS-ANFMGLEELQHLDFQHSTL 411

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 7/45 (15%), Positives = 17/45 (37%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           L +  + ++    F    RL+ + +  N++  L    +     L 
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 7/46 (15%), Positives = 12/46 (26%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           +  N++  L    +     L  +    N I           K L  
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  119 bits (301), Expect = 9e-32
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 97  CPHPCRCA-DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
              PC C  +       K + ++P L P +T  L+L +  +  +P  AF+N   + RI +
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQRIPSL-PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV 62

Query: 156 SKN-QISKVAVDAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISEN 206
           S +  + ++   +F  L  +T + + N  NLTY+      EL  L+ L I   
Sbjct: 63  SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 75.8 bits (187), Expect = 5e-16
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGLKS-LTSLTL 179
           L   T  L+L  N  T +   AF    +L  + L+KN+ ++ +  DAF G+ S  + L +
Sbjct: 154 LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212

Query: 180 NNNNLTYLPDGVFAELFRLRTL 201
           +  ++T LP      L  L   
Sbjct: 213 SQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 33/112 (29%)

Query: 295 CPHPCRCA-DGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
              PC C  +       K + ++P L P +T  L                          
Sbjct: 4   SSPPCECHQEEDFRVTCKDIQRIPSL-PPSTQTL-------------------------- 36

Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQND-ITELPPKAFANYKRLRR 404
               +L +  +  +P  AF+N   + RI +  +  + +L   +F N  ++  
Sbjct: 37  ----KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 120 ILLPEATTELRLEQND-ITELPPKAFAN-YKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
           +   +    L +  N  +T +P  AF         + L  N  + V   AF G K     
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185

Query: 178 TLNNNNLTYLPDGVFAELFR-LRTLRISENS 207
              N  LT +    F  ++     L +S+ S
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 127 TELRLEQN-DITELPPKAFAN-YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
             + L +N  +T +   AF   Y     +D+S+  ++ +     + L     L   N 
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL---KELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 362 NDITELPPKAFAN-YKRLRRIRLEQNDITELPPKAFANYKRLR 403
             +T +   AF   Y     + + Q  +T LP K   + K L 
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  121 bits (304), Expect = 4e-31
 Identities = 45/254 (17%), Positives = 66/254 (25%), Gaps = 87/254 (34%)

Query: 91  CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATT----------------------- 127
             +  SCP  C CA  I+ C ++ L  VP  LP  T                        
Sbjct: 6   GRSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTN 65

Query: 128 --------------------------ELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161
                                      L L  N +  L    F++ + L  + L  N I 
Sbjct: 66  LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125

Query: 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRL----------------------- 198
            V  +AF+ +  L  L L+ N ++  P  +  +  +L                       
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 199 ------RTLRISENSFICDCHLSWLHRWLKR-----YPRLGLYTKCFAPSHIKGQNILDI 247
                   L +  N   CDC L  L    +               C     +     LD 
Sbjct: 186 LPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLD- 244

Query: 248 PEHEFKCSGSSMET 261
               F CS      
Sbjct: 245 ---FFNCSEYKESA 255

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 17/122 (13%)

Query: 289 CAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISN- 347
             +  SCP  C CA  I+ C ++ L  VP  LP  T  L            L ++ +S  
Sbjct: 6   GRSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALL-----------DLSHNNLSRL 54

Query: 348 ----NFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
                  R TN  S  L  N +  +  +AF     LR + L  N +  L    F++ + L
Sbjct: 55  RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114

Query: 403 RR 404
             
Sbjct: 115 EV 116

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 11/89 (12%)

Query: 4   TLNNNNLTYLPDGVFAELFRL--RTLRISENSFICDCHLSWLHRWLKR-----YPRLGLY 56
            L++N L  LP     +L       L +  N   CDC L  L    +             
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQED 228

Query: 57  TKCFAPSHIKGQNILDIPEHEFKCSGPVE 85
             C     +     LD     F CS   E
Sbjct: 229 LYCMHSKKLHNIFSLD----FFNCSEYKE 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  120 bits (302), Expect = 6e-31
 Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 3/113 (2%)

Query: 97  CPHP-CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           C H  C C++ +  C+E  + ++P  LP    ELR     +  +   AF+ +  L +I++
Sbjct: 2   CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 156 SKNQI-SKVAVDAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISEN 206
           S+N +   +  D F  L  L  + +   NNL Y+    F  L  L+ L IS  
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 84.9 bits (210), Expect = 2e-18
 Identities = 46/303 (15%), Positives = 82/303 (27%), Gaps = 77/303 (25%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICD------CHLSWLHRWLKRYPRLGLYT 57
            ++N  + +LPD       +   L I +N  I          LS+    L          
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL---------- 159

Query: 58  KCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 117
                  +    I +I    F                                   G   
Sbjct: 160 ------WLNKNGIQEIHNSAF----------------------------------NGTQL 179

Query: 118 VPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
             + L         + N++ ELP   F        +D+S+ +I  +     + LK L   
Sbjct: 180 DELNL--------SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR-- 229

Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 237
             +  NL  LP     +L  L    ++     C    +W  +  + +P       C    
Sbjct: 230 ARSTYNLKKLP--TLEKLVALMEASLT-YPSHCCAFANWRRQISELHPI------CNKSI 280

Query: 238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPH 297
             +  + +     +   S  + +  S   R    T          E     C+ +P   +
Sbjct: 281 LRQEVDYMTQARGQR--SSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPKPDAFN 338

Query: 298 PCR 300
           PC 
Sbjct: 339 PCE 341

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 32/112 (28%)

Query: 295 CPHP-CRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWT 353
           C H  C C++ +  C+E  + ++P  LP    EL                          
Sbjct: 2   CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIEL-------------------------- 35

Query: 354 NRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE-LPPKAFANYKRLRR 404
               R     +  +   AF+ +  L +I + QND+ E +    F+N  +L  
Sbjct: 36  ----RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            + N++ ELP   F        + + +  I  LP     N K+LR 
Sbjct: 185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  118 bits (297), Expect = 9e-31
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 2/109 (1%)

Query: 100 PCRCADG--IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157
           PC          C E    K+P  LP +T  L L  N +  L   +F ++  L+ +DLS+
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
            +I  +   A+Q L  L++L L  N +  L  G F+ L  L+ L   E 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 93.5 bits (233), Expect = 8e-22
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLR----RIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
             L L  N I  +         ++      +DLS N ++ +   AF+ ++ L  L L+ N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTN 210

Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 225
            L  +PDG+F  L  L+ + +  N + C C  + +L RWL +  
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 254

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 32/109 (29%)

Query: 298 PCRCADG--IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNR 355
           PC          C E    K+P  LP +T  L                            
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNL---------------------------- 33

Query: 356 SRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
              L  N +  L   +F ++  L+ + L + +I  +   A+ +   L  
Sbjct: 34  --DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 51
            L+ N L  +PDG+F  L  L+ + +  N + C C  + +L RWL +  
Sbjct: 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 254

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (304), Expect = 6e-30
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 2/116 (1%)

Query: 95  PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRR 152
            S    C     +   +C   GLN++P  LP +T  L    N +  +    F+    L  
Sbjct: 2   TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTF 61

Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
           +DL++ QI  +  D FQ    L +L L  N L ++ +   +    L+ L   +   
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (255), Expect = 1e-23
 Identities = 30/151 (19%), Positives = 50/151 (33%), Gaps = 29/151 (19%)

Query: 127 TELRLEQNDIT---ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
             L L+ N           +     RL  + LS   +S +   AF  LK +  + L++N 
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 184 LTYLP-----------------------DGVFAELFRLRTLRISENSFICDCHLSWLHRW 220
           LT                            +   L + RT+ + +N   C C   +   W
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571

Query: 221 LKR-YPRLGLY--TKCFAPSHIKGQNILDIP 248
            K    +L     T C  P  ++G  + D+ 
Sbjct: 572 YKENMQKLEDTEDTLCENPPLLRGVRLSDVT 602

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 29/209 (13%), Positives = 61/209 (29%), Gaps = 34/209 (16%)

Query: 5   LNNNNLTYLPDGVFAELFRLR--TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP 62
             NN + YL     + L +    +L ++ N        ++     +     G        
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 63  SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
             +K   I  +    F+                             D  ++ ++      
Sbjct: 220 KGLKNSTIQSLWLGTFE-----------------------------DMDDEDISPAVFEG 250

Query: 123 PEAT--TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN 180
                   + L+++    +    F  +  L+ +DL+   +S++      GL +L  L L+
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLS 309

Query: 181 NNNLTYLPDGVFAELFRLRTLRISENSFI 209
            N    L     +    L  L I  N+  
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKR 338

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.4 bits (217), Expect = 8e-19
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 2/128 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L   Q  I+ +      N K L  + L  N IS + +      + L  L   NN + Y
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167

Query: 187 LPDGVFAELFRLR--TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNI 244
           L     + L +    +L ++ N        ++     +     G          +K   I
Sbjct: 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 245 LDIPEHEF 252
             +    F
Sbjct: 228 QSLWLGTF 235

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 127 TELRLEQNDI-TELPPKAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNN 183
           T L ++ N    EL      N + LR +DLS + I          + L  L SL L+ N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 184 LTYLPDGVFAELFRLRTLRISENSF 208
              L    F E  +L  L ++    
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRL 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 127 TELRLEQNDITELP--PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
            EL L  +DI           N   L+ ++LS N+   +  +AF+    L  L L    L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 185 TYL-PDGVFAELFRLRTLRISENSF 208
                   F  L  L+ L +S +  
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKR--LRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
                E  D  ++ P  F       +  I+L K+    ++ + F     L  L L   +L
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 185 TYLPDGVFAELFRLRTLRISENSF--ICDCHLSWLHR 219
           + LP G    L  L+ L +S N F  +C    S    
Sbjct: 291 SELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPS 326

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 127 TELRLEQNDITELPPK-AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L L    +     +  F N   L+ ++LS + +   +   F GL +L  L L  N+  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 186 YL---PDGVFAELFRLRTLRISENSF 208
                       L RL  L +S    
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDL 488

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTLNNNNLT 185
            +L L  N    L   + +N+  L  + +  N    ++     + L++L  L L+++++ 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 186 YLP--DGVFAELFRLRTLRISENSFI 209
                +     L  L++L +S N  +
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 7e-13
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKR-YPRLGLY--TKCFA 61
           L +N+++ +   +   L + RT+ + +N   C C   +   W K    +L     T C  
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCEN 589

Query: 62  PSHIKGQNILDIP 74
           P  ++G  + D+ 
Sbjct: 590 PPLLRGVRLSDVT 602

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 28/124 (22%)

Query: 293 PSCPHPCRC--ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN-- 348
            S    C     +   +C   GLN++P  LP +T  L                  S N  
Sbjct: 2   TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECL----------------EFSFNVL 45

Query: 349 -------FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK 400
                  F R  N     L +  I  +    F +  RL  + L  N +  +   A +  K
Sbjct: 46  PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105

Query: 401 RLRR 404
            L+ 
Sbjct: 106 ALKH 109

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           L   D++ +   AF + K +  + L  N +T    +A ++ K + 
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
            L+++    +    F  +  L+ + L    ++ELP         L+
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLK 304

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK-AFANYKRLRR 404
            L  N+   L  +AF    +L  + L    +     +  F N   L+ 
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 7/45 (15%), Positives = 19/45 (42%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           L  N I+ +        ++L+ +  + N I  L  +  ++ ++  
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  119 bits (300), Expect = 1e-29
 Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 96  SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           SC         + D R +    +P  L  A   L L  N IT +          L+ + L
Sbjct: 3   SCDASG-----VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 156 SKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
             ++I+ +  DAF  L SL  L L++N+L+ L    F  L  L+ L +  N +
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (257), Expect = 5e-24
 Identities = 39/281 (13%), Positives = 78/281 (27%), Gaps = 48/281 (17%)

Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLS-KNQISKVAVDAFQGLKSLTSLTLNNNNL 184
             L L  N    L     F N   L+ + +      S++    F GL SL  L +   +L
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 185 TYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ 242
                     +  +  L +  +  +F+ +     L                     ++  
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS--------------VRYLELRDT 206

Query: 243 NILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCA 302
           N+             S   +   +R    TD        + +   E              
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL-----------SE 255

Query: 303 DGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQN 362
               DC   GL        +  +EL  + ++                   T R   + Q 
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETV-------------------TIRRLHIPQF 296

Query: 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
            +       ++  ++++RI +E + +  +P     + K L 
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 38/237 (16%), Positives = 76/237 (32%), Gaps = 68/237 (28%)

Query: 5   LNNNNLTYLPD--GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP 62
           L+ N+L  +     +   L  L +L IS N          +               C  P
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRN------TFHPMPD------------SCQWP 409

Query: 63  SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
             ++                                         ++    G+  V   +
Sbjct: 410 EKMR----------------------------------------FLNLSSTGIRVVKTCI 429

Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
           P+    L +  N++            RL+ + +S+N++  +   +      L  + ++ N
Sbjct: 430 PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRN 483

Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGLYT-KCFAPS 237
            L  +PDG+F  L  L+ + +  N + C C  + +L RWL +  +    + KC    
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG 540

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLHRWLKRYPRLGLYTKCFA 61
            +   +L          +  +  L +  +  +F+ +     L        R     +   
Sbjct: 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 62  PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
                 +    + +  F+ S   ++   E              +   DC   GL      
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE-FDDCTLNGLGDFNPS 272

Query: 122 LPEATTE-----------LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
             +  +E           L + Q  +       ++  ++++RI +  +++  V     Q 
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQH 332

Query: 171 LKSLTSLTLNNNNLTYLP---DGVFAELFRLRTLRISENSF 208
           LKSL  L L+ N +                L+TL +S+N  
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 127 TELRLEQNDITELPPK---AFANYKRLRRIDLSKNQISKV--AVDAFQGLKSLTSLTLNN 181
             L L +N + E   K       +  L+ + LS+N +  +    +    LK+LTSL ++ 
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 182 NNLTYLPDGVFAELFRLRTLRISENSF 208
           N    +PD       ++R L +S    
Sbjct: 397 NTFHPMPDS-CQWPEKMRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 9e-12
 Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 31/121 (25%)

Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN----- 348
           SC         + D R +    +P  L  A   L                 +S N     
Sbjct: 3   SCDASG-----VCDGRSRSFTSIPSGLTAAMKSL----------------DLSFNKITYI 41

Query: 349 ----FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
                +   N +   L+ + I  +   AF +   L  + L  N ++ L    F     L+
Sbjct: 42  GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101

Query: 404 R 404
            
Sbjct: 102 Y 102

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 63/231 (27%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICD---------CHLSWLHRWLKRYPRLG- 54
           L++N+L+ L    F  L  L+ L +  N +             +L  L   +        
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL--RIGNVETFSE 138

Query: 55  LYTKCFAPS------HIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIV 108
           +    FA         IK  ++ +                                    
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSL------------------------------ 168

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
               K +  +  L         L  ++   L          +R ++L    +++      
Sbjct: 169 ----KSIRDIHHL--------TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRL--RTLRISENSFICDCHLSWL 217
              +  + +       + L D  F EL +L    L +SE  F  DC L+ L
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD-DCTLNGL 266

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  119 bits (301), Expect = 1e-29
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 100 PCRC--ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157
           PC     +    C E    K+P  LP +T  L L  N +  L   +F ++  L+ +DLS+
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
            +I  +   A+Q L  L++L L  N +  L  G F+ L  L+ L   E + 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 4e-24
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%)

Query: 127 TELRLEQNDITE-LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L++  N   E   P  F   + L  +DLS+ Q+ +++  AF  L SL  L + +N L 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 186 YLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 222
            +PDG+F  L  L+ + +  N + C C  + +L RWL 
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 7e-17
 Identities = 39/230 (16%), Positives = 67/230 (29%), Gaps = 64/230 (27%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW-LKRYPRL-GLYTKCFAP 62
               N   +PD +       + L +S N       L  L  +    +P L  L       
Sbjct: 14  CMELNFYKIPDNLPFS---TKNLDLSFN------PLRHLGSYSFFSFPELQVLD------ 58

Query: 63  SHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
             +    I  I +  +                                  + L+ +    
Sbjct: 59  --LSRCEIQTIEDGAY----------------------------------QSLSHL---- 78

Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
               + L L  N I  L   AF+    L+++   +  ++ +       LK+L  L + +N
Sbjct: 79  ----STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 183 NLTYLPDG-VFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGL 229
            +        F+ L  L  L +S N    I    L  LH+       L L
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
             L L  N +  +    F   ++L  +D   + + ++     F  L++L  L +++ +  
Sbjct: 376 KYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 186 YLPDGVFAELFRLRTLRISENSF 208
              +G+F  L  L  L+++ NSF
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 44/292 (15%), Positives = 88/292 (30%), Gaps = 32/292 (10%)

Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT----SLTLNN 181
            EL +  N I     P+ F+N   L  +DLS N+I  +     + L  +     SL L+ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG 241
           N + ++  G F E+ RL  L +  N    +   + +   L       L    F       
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG-LAGLEVHRLVLGEFRNEG--- 241

Query: 242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPS----CPH 297
            N+    +   +   +      ++   +   D        +   +       +       
Sbjct: 242 -NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 298 PCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR 357
                   ++       + P L  ++   LT              +   N F      S 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLT-----------FTSNKGGNAFSEVDLPSL 349

Query: 358 R---LEQNDIT--ELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
               L +N ++      ++      L+ + L  N +  +    F   ++L  
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEH 400

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 31/230 (13%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICD---------CHLSWLHRWLKRYPRLG- 54
           L+ N + ++  G F E+ RL  L +  N    +           L      L  +   G 
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 55  --------------LYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHP 100
                         L  + F  +++    + DI +     +            E      
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLD-YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
                  ++       + P L  ++   L    N        +  +   L  +DLS+N +
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGL 359

Query: 161 SKVAV--DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
           S       +  G  SL  L L+ N +  +    F  L +L  L    ++ 
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNL 408

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 108 VDCREKGLNKVPILLPEAT--TELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVA 164
           +D    G+  +            L  + +++ ++     F + + L  +D+S        
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 165 VDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRISEN 206
              F GL SL  L +  N+        +F EL  L  L +S+ 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 28/119 (23%)

Query: 298 PCRC--ADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN------- 348
           PC     +    C E    K+P  LP +T  L                 +S N       
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNL----------------DLSFNPLRHLGS 45

Query: 349 --FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
             F  +   +   L + +I  +   A+ +   L  + L  N I  L   AF+    L++
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 48
           + +N L  +PDG+F  L  L+ + +  N + C C  + +L RWL 
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 10/99 (10%)

Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTL- 179
           +P     L L  N +  + P AF    RL ++ L  N  S  V     QGL  L    L 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 180 -----NNNNLTYLPDGVFAEL--FRLRTLRISENSFICD 211
                N  NL          L    +   R++   +  D
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 39/229 (17%), Positives = 58/229 (25%), Gaps = 25/229 (10%)

Query: 5   LNNNNLTYLPDG-VFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYT---K 58
           + +N +        F+ L  L  L +S N    I    L  LH+       L L      
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 59  CFAPSHIKGQNI--LDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN 116
              P   K   +  L +  +    +       G    E          +      E  L 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------EGNLE 244

Query: 117 KVPILLPEATTELRLEQNDITELP------PKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
           K      E    L +E+  +  L          F     +    L    I +  V  F  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSY 302

Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR 219
                 L L N      P     +L  L+ L  + N          L  
Sbjct: 303 NFGWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 33/222 (14%), Positives = 59/222 (26%), Gaps = 52/222 (23%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT---KCFA 61
               NL  L +     L  L+ L ++ N  I    L      L     L L +   +   
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 62  PSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL 121
            + ++  + + +       S                                  N +  +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSL---------------------------------NPMNFI 192

Query: 122 LPEATTELRLEQ-----NDIT-ELPPKAFANYKRLRRIDLSK------NQISKVAVDAFQ 169
            P A  E+RL +     N  +  +          L    L          + K    A +
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 170 GLKSLTSLTLNNNNLTYLPD---GVFAELFRLRTLRISENSF 208
           GL +LT        L Y  D    +F  L  + +  +   + 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L Q  + +L P AF +   L+ + +  N +  +P   F     L++
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  115 bits (291), Expect = 4e-28
 Identities = 37/108 (34%), Positives = 49/108 (45%)

Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI 160
           C  +  + DC    L +VP  LP   T L L  N +  LP   F  Y +L  +D+  N I
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
           SK+  +  Q L  L  L L +N L+ L D  FA    L  L +  NS 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 3e-22
 Identities = 34/159 (21%), Positives = 52/159 (32%), Gaps = 38/159 (23%)

Query: 127 TELRLEQNDITELPPKA--------FANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLT 178
             L L+ N++  L   A              L  ++L  N   ++ V+ F+ L  L  + 
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566

Query: 179 LNNNNLTYLPDGVFAELFRLRTL-------------------------RISENSFICDC- 212
           L  NNL  LP  VF     L++L                          +  N F C C 
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

Query: 213 HLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQNILDI 247
            ++W   W+       P L  +  C  P H  G  +   
Sbjct: 627 SIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLF 665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           TEL L  N I ++    F   K L  +DLS N +S   +     L++L  L L+NN +  
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 187 LPDGVFAELF--RLRTLRISENSF 208
           L            L+ L +S N  
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQI 183

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 127 TELRLEQNDITELPPKAFAN--YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
             L L  + ++      F    +  L  +DLS N ++ V  D+F  L  L    L  NN+
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

Query: 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
            +L       LF +R L +  +       L+ L 
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L L  N+I  EL  + +   + +  I LS N+  ++  ++F  + SL  L L    L 
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

Query: 186 YLPD--GVFAELFRLRTLRISENSF 208
            +      F  L  L  L +S N+ 
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNI 492

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 41/213 (19%), Positives = 74/213 (34%), Gaps = 57/213 (26%)

Query: 5   LNNNNLTYLPDGVFAELF--RLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYTKCF 60
           L+N+ L+   +  F  L    L  L +S N+   + +   +WL + L+      L     
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEY---FFLE---- 280

Query: 61  APSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI 120
                   NI  +  H                                     GL  V  
Sbjct: 281 ------YNNIQHLFSHSLH----------------------------------GLFNVRY 300

Query: 121 L-LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL 179
           L L  + T+  +    + ++   +F   K L  +++  N I  +  + F GL +L  L+L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 180 NNN--NLTYLPDGVFAELF--RLRTLRISENSF 208
           +N+  +L  L +  F  L    L  L +++N  
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 7e-14
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ---GLKSLTSLTLNNNN 183
            +L L  N I E  P  F    RL  + L+  Q+     +         S+ +L+L+N+ 
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 184 LTYLPDGVFAELF--RLRTLRISENSF 208
           L+   +  F  L    L  L +S N+ 
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNL 260

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 127 TELRLEQNDITELP--PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
             L L +  +  +   P  F   + L  +DLS N I+ +  D  +GL+ L  L L +NNL
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 185 TYL--------PDGVFAELFRLRTLRISENSF 208
             L        P      L  L  L +  N F
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 127 TELRLEQNDITELPPKAFANYK--RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
            EL L  N I  L  +    +    L++++LS NQI + +   F  +  L  L LNN  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 185 TY-LPDGVFAELF--RLRTLRISENSF 208
              L + +  EL    +R L +S +  
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQL 234

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 5e-12
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 127 TELRLEQND--ITELPPKAFAN--YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
             L L  +   +  L  + F +  +  L  ++L+KN+ISK+  DAF  L  L  L L  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 183 NLT-YLPDGVFAELFRLRTLRISENSF 208
            +   L    +  L  +  + +S N +
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKY 442

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 299 CRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSR 357
           C  +  + DC    L +VP  LP   T L        +    L    + NF R++   S 
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLPTNITVL-------NLTHNQLRRLPAANFTRYSQLTSL 54

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            +  N I++L P+       L+ + L+ N++++L  K FA    L  
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 24/109 (22%), Positives = 32/109 (29%), Gaps = 30/109 (27%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTL-------------------------RISENSFICDC- 38
           L  NNL  LP  VF     L++L                          +  N F C C 
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

Query: 39  HLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGP 83
            ++W   W+       P L  +  C  P H  G  +        K S  
Sbjct: 627 SIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAH 675

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE 390
           ++ R+ K           K  ++     LE N   E+P + F +   L+ I L  N++  
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 391 LPPKAFANYKRLRR 404
           LP   F N   L+ 
Sbjct: 575 LPASVFNNQVSLKS 588

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
            L  N++  +   +FA   +L    LE N+I  L   +      +R
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 344 YISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
            +  +F       + +    + ++   +F   K L  + +E NDI  +    F     L+
Sbjct: 302 NLKRSF-----TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDIT-ELPPKAFANYKRLR 403
            L +N I+++   AF+    L  + L  N+I  EL  + +   + + 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
           L  N++  LP   F N   L+ + L++N IT +  K F  
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  109 bits (275), Expect = 1e-27
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 97  CPHPCRCADGI--VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
               C C +    VDC  K L  +P  +P  T +L L+ N ++ LP KAF    +LR + 
Sbjct: 8   DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67

Query: 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           L+ N++  +    F+ LK+L +L + +N L  LP GVF +L  L  LR+  N
Sbjct: 68  LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 99.3 bits (248), Expect = 6e-24
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 28/174 (16%)

Query: 108 VDCREKGLNKVP---ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
           +   +  L  +P           ELRL++N +  LPP+ F +  +L  + L  N++  + 
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149

Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS----------------- 207
              F  L SL  L L NN L  +P+G F +L  L+TL++  N                  
Sbjct: 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209

Query: 208 -------FICDCH-LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK 253
                  + C C+ + ++ +WLK+    GL     A     G+ +L+I E +  
Sbjct: 210 LQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVLEITEKDAA 263

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 32/111 (28%)

Query: 295 CPHPCRCADGI--VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
               C C +    VDC  K L  +P  +P  T +L                         
Sbjct: 8   DGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKL------------------------- 42

Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
                 L+ N ++ LP KAF    +LR + L  N +  LP   F   K L 
Sbjct: 43  -----DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPRLGLYTKCFAP 62
            L+NN L  +P+G F  L +L+ L++ EN + C C+ + ++ +WLK+    GL     A 
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAG 246

Query: 63  SHIKGQNILDIPEHEF--KCSGP 83
               G+ +L+I E +    C  P
Sbjct: 247 CEKGGKAVLEITEKDAASDCVSP 269

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 23/109 (21%)

Query: 306 VDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN---------FKRWTNRS 356
           +   +  L  +PI + +    L  +              +  N         F   T  +
Sbjct: 90  LWVTDNKLQALPIGVFDQLVNLAEL-------------RLDRNQLKSLPPRVFDSLTKLT 136

Query: 357 R-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
              L  N++  LP   F     L+ +RL  N +  +P  AF     L+ 
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
           L  N +  +P  AF     L+ ++L+ N +  +P  AF + ++L
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  112 bits (283), Expect = 3e-27
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 100 PCRCA--DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSK 157
           PC     +    C E    K+P  LP +T  L L  N +  L   +F ++  L+ +DLS+
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 158 NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
            +I  +   A+Q L  L++L L  N +  L  G F+ L  L+ L   E + 
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.4 bits (243), Expect = 4e-22
 Identities = 35/150 (23%), Positives = 57/150 (38%), Gaps = 29/150 (19%)

Query: 127 TELRLEQNDITE-LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L++  N   E   P  F   + L  +DLS+ Q+ +++  AF  L SL  L +++NN  
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 186 YLPDGVFAELFRLRTLRISENS-------------------------FICDCHLSWLHRW 220
            L    +  L  L+ L  S N                          F C C      +W
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

Query: 221 LKRYPRLGLY---TKCFAPSHIKGQNILDI 247
           +K   +L +     +C  PS  +G  +L +
Sbjct: 568 IKDQRQLLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
             L L  N +  +    F   ++L  +D   + + +++    F  L++L  L +++ +  
Sbjct: 376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 186 YLPDGVFAELFRLRTLRISENSFI 209
              +G+F  L  L  L+++ NSF 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT----SLTLNN 181
            EL +  N I     P+ F+N   L  +DLS N+I  +     + L  +     SL L+ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 182 NNLTYLPDGVFAELFRLRTLRISENSF 208
           N + ++  G F E+ RL  L +  N  
Sbjct: 187 NPMNFIQPGAFKEI-RLHKLTLRNNFD 212

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 127 TELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
             L L +N ++      ++      L+ +DLS N +  +    F GL+ L  L   ++NL
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 408

Query: 185 TYL-PDGVFAELFRLRTLRISENSF 208
             +    VF  L  L  L IS    
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHT 433

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 5   LNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLY---TKCF 60
            + N++              L  L +++N F C C      +W+K   +L +     +C 
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 61  APSHIKGQNILDI 73
            PS  +G  +L +
Sbjct: 585 TPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 34/215 (15%), Positives = 52/215 (24%), Gaps = 49/215 (22%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L+ N + ++  G F E+ RL  L +  N    +  +    + L       L    F    
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN-VMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
               N+    +   +                                  GL  + I    
Sbjct: 242 ----NLEKFDKSALE----------------------------------GLCNLTIE--- 260

Query: 125 ATTELRLEQNDI-TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
              E RL   D   +     F     +    L    I +V    F        L L N  
Sbjct: 261 ---EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCK 315

Query: 184 LTYLPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
               P      L RL        +   +  L  L 
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 10/109 (9%)

Query: 298 PCRCA--DGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN- 354
           PC     +    C E    K+P  LP +T  L        +    L    S +F  +   
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDNLPFSTKNL-------DLSFNPLRHLGSYSFFSFPEL 54

Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           +   L + +I  +   A+ +   L  + L  N I  L   AF+    L+
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTL- 179
           +P     L L  N +  + P AF    RL ++ L  N  S  V     QGL  L    L 
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 180 --NNNNLTYLPDGVFAELFRLRTLRISENSF 208
                N   L     + L  L  L I E   
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L Q  + +L P AF +   L+ + +  N+   L    +     L+ 
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (271), Expect = 6e-26
 Identities = 50/350 (14%), Positives = 103/350 (29%), Gaps = 53/350 (15%)

Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
           +VD  + GL  VP  L + TT L + QN I+EL      +  +LR + +S N+I  + + 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 167 AFQGLKSLTSLTLNNNNLTYLP----------------------DGVFAELFRLRTLRIS 204
            F+  + L  L L++N L  +                          F  + +L+ L +S
Sbjct: 64  VFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 205 EN-----SFICDCHLSWLHRWLKRYPRLGLY--TKCFAPSHIKGQNILDIPEHEFK---- 253
                  S +   HL+     L      G     +     + +  +I+     EF     
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 254 -CSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG 312
               +         +     +   Y    + K            +             + 
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

Query: 313 LNKVPIL-----------------LPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN- 354
           +    +                     + T L   +SI +V   +     S  ++ ++N 
Sbjct: 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA-LSIHQVVSDVFGFPQSYIYEIFSNM 302

Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
             +    +    +     +       +    N +T+   +   +   L  
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 4/101 (3%)

Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
            ++   L +  N +T+   +      R++ +DL  N+I  +     + L++L  L + +N
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASN 454

Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 222
            L  +PDG+F  L  L+ + +  N + C C  + +L RWL 
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.6 bits (178), Expect = 5e-14
 Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV--AVDAFQGLKSLTSLTLNNNN 183
              L    N +T+   +   +   L  + L  NQ+ ++    +    +KSL  L ++ N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 184 LTY-LPDGVFAELFRLRTLRISENSF 208
           ++Y    G  +    L +L +S N  
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 69.5 bits (170), Expect = 5e-13
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 2/83 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
                  +    +     +       +D S N ++    +    L  L +L L  N L  
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE 362

Query: 187 LPD--GVFAELFRLRTLRISENS 207
           L     +  ++  L+ L IS+NS
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNS 385

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 9e-11
 Identities = 11/82 (13%), Positives = 25/82 (30%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           +  ++  +         +  +  +   + + +    V +     +     L  +NN LT 
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338

Query: 187 LPDGVFAELFRLRTLRISENSF 208
                   L  L TL +  N  
Sbjct: 339 TVFENCGHLTELETLILQMNQL 360

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 24/240 (10%), Positives = 59/240 (24%), Gaps = 36/240 (15%)

Query: 5   LNNNNLTYLPD-GVFAELFRLRTLRISEN-----SFICDCHLSWLHRWLKRYPRLGLY-- 56
           L+ N    LP    F  + +L+ L +S       S +   HL+     L      G    
Sbjct: 97  LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

Query: 57  TKCFAPSHIKGQNILDIPEHEFKC------------------SGPVEKPTGECAAEPSCP 98
            +     + +  +I+     EF                        +       +  +  
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 99  HPCRCADGI----VDCREKGLNKVPILLPEAT-TELRLEQNDITELPPKAFANY-----K 148
                   +    ++       ++  L+   T     +    +         +Y     K
Sbjct: 217 QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276

Query: 149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
            L    +  +         ++   ++       +    +     +++     L  S N  
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLK 48
           + +N L  +PDG+F  L  L+ + +  N + C C  + +L RWL 
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  108 bits (271), Expect = 1e-25
 Identities = 53/300 (17%), Positives = 90/300 (30%), Gaps = 81/300 (27%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHR------WLKRYPRLGLYT 57
            L  N++  + D  F  L +L+TL + +N+      +  +         L   P++ L  
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403

Query: 58  KCFAPSHIKGQNI--------------LDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRC 103
                S  + +N+              L + ++ F                 SC      
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS----------------SCSGDQTP 447

Query: 104 ADGIVDCREKGLNKVPILLPEATTELRLEQNDI-----TELPPKAFANYKRLRRIDLSKN 158
           +                    +  +L L +N +     TEL    F     L+ + L+ N
Sbjct: 448 S-----------------ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA-------------------ELFRLR 199
            ++ +    F  L +L  L+LN+N LT L                             L 
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLS 550

Query: 200 TLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
            L I+ N FIC+C LS    WL               C  P    G ++  +        
Sbjct: 551 VLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEE 610

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (265), Expect = 7e-25
 Identities = 46/234 (19%), Positives = 83/234 (35%), Gaps = 21/234 (8%)

Query: 5   LNNNNLTYLP-DGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRL-------- 53
           L+ N +  L     F +L  L+++  S N    +C+  L  L      +  L        
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 54  --GLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCR 111
               + KC  P       ILD+  + +         +   +   +               
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVD-ITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 112 EKGLNKVPI-----LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
              +          L   +   L L    +  L  + F   K L+ ++L+ N+I+K+A +
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

Query: 167 AFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN--SFICDCHLSWLH 218
           AF GL +L  L L+ N L  L    F  L ++  + + +N  + I D    +L 
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.5 bits (235), Expect = 5e-21
 Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 28/135 (20%)

Query: 101 CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP-------------------- 140
           C     I   R   L +VP +L   T  L L  N I  +                     
Sbjct: 2   CSFDGRIAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 141 -----PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT--YLPDGVFA 193
                 +AF N   LR +DL  ++I  +  DAFQGL  L  L L    L+   L DG F 
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 194 ELFRLRTLRISENSF 208
            L  L  L +S+N  
Sbjct: 121 NLKALTRLDLSKNQI 135

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 3e-19
 Identities = 22/92 (23%), Positives = 43/92 (46%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N I ++  +AF     L+ ++LS N + ++    F GL  +  + L  N++  
Sbjct: 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLH 218
           + D  F  L +L+TL + +N+      +  + 
Sbjct: 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.9 bits (218), Expect = 6e-19
 Identities = 44/251 (17%), Positives = 74/251 (29%), Gaps = 51/251 (20%)

Query: 5   LNNNNLT--YLPDGVFAELFRLRTLRISENSF---------------------------I 35
           L    L+   L DG F  L  L  L +S+N                             +
Sbjct: 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 36  CDCHLSWLHRWLKRYPRLG---LYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECA 92
           C+  L  L      +  L    LY++             ++       SG          
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW------- 216

Query: 93  AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKR--L 150
              +       ++ I            ++L           ++I +     FA   R  +
Sbjct: 217 ---TVDITGNFSNAI-----SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268

Query: 151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF-- 208
           R +DLS   +  +    F+ LK L  L L  N +  + D  F  L  L+ L +S N    
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 209 ICDCHLSWLHR 219
           +   +   L +
Sbjct: 329 LYSSNFYGLPK 339

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 38/220 (17%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYTKCFA 61
            L  N +  + D  F  L  L+ L +S N    +   +   L + +       +      
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAY-----ID----- 344

Query: 62  PSHIKGQNILDIPEHEFKCSGPVEK------PTGECAAEPSCPHPCRCADGIVDCREKGL 115
              ++  +I  I +  FK    ++               PS P         +      L
Sbjct: 345 ---LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD--------IFLSGNKL 393

Query: 116 NKVPILLPEATTELRLEQNDITELPPKAF-ANYKRLRRIDLSKNQISKVAVDA-FQGLKS 173
             +P +   A   + L +N +  L    F      L+ + L++N+ S  + D       S
Sbjct: 394 VTLPKINLTANL-IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452

Query: 174 LTSLTLNNNNLTY-----LPDGVFAELFRLRTLRISENSF 208
           L  L L  N L       L   VF  L  L+ L ++ N  
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 25/117 (21%), Positives = 33/117 (28%), Gaps = 28/117 (23%)

Query: 299 CRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNN---------F 349
           C     I   R   L +VP +L   T  L                 +S N         F
Sbjct: 2   CSFDGRIAFYRFCNLTQVPQVLN-TTERL----------------LLSFNYIRTVTASSF 44

Query: 350 KRWTN-RSRRLEQNDIT-ELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                 +   L        +  +AF N   LR + L  + I  L P AF     L  
Sbjct: 45  PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 7/93 (7%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK----RYPRLGLYTKCF 60
           ++ N L      VF     L  L I+ N FIC+C LS    WL               C 
Sbjct: 533 ISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCV 589

Query: 61  APSHIKGQNILDIPEHEFKCSGPVEKPTGECAA 93
            P    G ++  +          ++        
Sbjct: 590 YPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFI 622

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
            L    +  L  + F   K L+ + L  N I ++  +AF     L+
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 344 YISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           ++  N          L+    TEL    F     L+ + L  N +  LPP  F++   LR
Sbjct: 457 FLGEN---------MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
            L  N I ++  +AF     L+ + L  N + EL    F    ++  +
Sbjct: 296 NLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 358 RLEQNDITELPPKAFANYKR--LRRIRLEQNDITELPPKAFANYKRLRR 404
               ++I +     FA   R  +R + L    +  L  + F   K L+ 
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           L  N + EL    F    ++  I L++N I  +  + F   ++L+
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN 398
           L  N +  LPP  F++   LR + L  N +T L       
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA 526

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  104 bits (260), Expect = 2e-25
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 94  EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
            P C      +   V+C ++ L  +P  LP+ TT L L +N +          Y RL ++
Sbjct: 1   HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           +L + +++   +     L  L +L L++N L  LP  +   L  L  L +S N
Sbjct: 61  NLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFN 110

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  101 bits (254), Expect = 1e-24
 Identities = 48/223 (21%), Positives = 75/223 (33%), Gaps = 40/223 (17%)

Query: 108 VDCREKGLNKVPILLPE--ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV 165
           +D     L  +P+L     A T L +  N +T LP  A      L+ + L  N++  +  
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141

Query: 166 DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS------------------ 207
                   L  L+L NNNLT LP G+   L  L TL + ENS                  
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF 201

Query: 208 -----FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETR 262
                ++C+C + +  RWL+         K          N+  +     +C  S    +
Sbjct: 202 LHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASV-----QCDNS---DK 253

Query: 263 SKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGI 305
             +Y+            CP     G+       P      D +
Sbjct: 254 FPVYKYPGKG-------CPTLGDEGDTDLYDYYPEEDTEGDKV 289

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 32/113 (28%)

Query: 292 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKR 351
            P C      +   V+C ++ L  +P  LP+ TT L                        
Sbjct: 1   HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTIL------------------------ 36

Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                  L +N +          Y RL ++ L++ ++T+L          L  
Sbjct: 37  ------HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT 81

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 29/124 (23%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENS-----------------------FICDCHLS 41
           L NNNLT LP G+   L  L TL + ENS                       ++C+C + 
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

Query: 42  WLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPC 101
           +  RWL+         K          N+  +     +C    + P  +      CP   
Sbjct: 215 YFRRWLQDNAENVYVWKQGVDVKAMTSNVASV-----QCDNSDKFPVYKYPG-KGCPTLG 268

Query: 102 RCAD 105
              D
Sbjct: 269 DEGD 272

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L+ N++  LPP       +L ++ L  N++TELP       + L  
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 99.5 bits (248), Expect = 2e-25
 Identities = 46/171 (26%), Positives = 61/171 (35%), Gaps = 52/171 (30%)

Query: 97  CPHPCRCADGIVDCREKGLNK--VPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
           CP PC CA  +VDC  +GL    +P   P  TTEL L                       
Sbjct: 2   CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVL----------------------- 38

Query: 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHL 214
                                      NNLT LP G+   L  LRT  +  N + CDC L
Sbjct: 39  -------------------------TGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73

Query: 215 SWLHRWLKRYPRLGLYT--KCFAPSHIKGQNILDIPEHEFKCSGSSMETRS 263
             L  WL   P    Y   +C AP  ++G+ +  + E E + + +     S
Sbjct: 74  VPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLSS 124

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 85.6 bits (212), Expect = 2e-20
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT--KCFAP 62
           L  NNLT LP G+   L  LRT  +  N + CDC L  L  WL   P    Y   +C AP
Sbjct: 38  LTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAP 97

Query: 63  SHIKGQNILDIPEHEFKCSGP 83
             ++G+ +  + E E + +  
Sbjct: 98  PALRGRLLPYLAEDELRAACA 118

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 27/94 (28%), Positives = 32/94 (34%), Gaps = 32/94 (34%)

Query: 295 CPHPCRCADGIVDCREKGLNK--VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
           CP PC CA  +VDC  +GL    +P   P  TTEL                         
Sbjct: 2   CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTEL------------------------- 36

Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQN 386
                 L  N++T LPP        LR   L  N
Sbjct: 37  -----VLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  101 bits (254), Expect = 4e-25
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 2/108 (1%)

Query: 101 CRCADG--IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
           C C +G   VDC+ K L+ VP  +P  T +L L+   +  L    F    +L  ++L  N
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69

Query: 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           Q+  ++   F  L  L +L L NN L  LP GVF  L +L  L +  N
Sbjct: 70  QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 84.0 bits (208), Expect = 1e-18
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 4/122 (3%)

Query: 108 VDCREKGLNKVPILLPE---ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
           +      L  +P+ + +      +L L  N +  LP   F    +L+ + L+ NQ+  + 
Sbjct: 88  LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147

Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKR 223
             AF  L +L +L+L+ N L  +P G F  L +L+T+ +  N F C    + +L +W++ 
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRE 207

Query: 224 YP 225
             
Sbjct: 208 NS 209

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 108 VDCREKGLNKVPI---LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
           ++     L  +             L L  N +  LP   F +  +L ++ L  NQ+  + 
Sbjct: 64  LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123

Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
              F  L  L  L LN N L  +P G F +L  L+TL +S N
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 299 CRCADG--IVDCREKGLNKVPILLPEATTELT-YMVSIDRVD-------KVLLYSYISNN 348
           C C +G   VDC+ K L+ VP  +P  T +L      +  +          L +  +  N
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN 69

Query: 349 ---------FKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
                    F   T      L  N +  LP   F +  +L ++ L  N +  LP   F
Sbjct: 70  QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF 127

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYP 51
           +L+ N L  +P G F  L +L+T+ +  N F C    + +L +W++   
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS 209

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score =  100 bits (252), Expect = 6e-25
 Identities = 42/110 (38%), Positives = 52/110 (47%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   VDCR K    VP  +P     L L  N IT+L P  F +   L+ + L 
Sbjct: 13  CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72

Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
            NQ+  + V  F  L  LT L L  N LT LP  VF  L  L+ L +  N
Sbjct: 73  SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C+   VDCR K    VP  +P     L        +    +       F    N
Sbjct: 13  CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQIL-------YLHDNQITKLEPGVFDSLIN 65

Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
                L  N +  LP   F +  +L  + L  N +T LP   F
Sbjct: 66  LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
            EL +  N +TELP +       L  + L +NQ+  +   AF  L SLT   L  N
Sbjct: 115 KELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 99.7 bits (249), Expect = 1e-24
 Identities = 40/110 (36%), Positives = 57/110 (51%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   V+C  +G   VP  +P  TT L LE N +  LP   F     L ++ L 
Sbjct: 1   CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG 60

Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
            N++  +    F  L SLT L L+ N L  LP+GVF +L +L+ L ++ N
Sbjct: 61  GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C+   V+C  +G   VP  +P  TT L        ++   L S  +  F   T+
Sbjct: 1   CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYL-------DLETNSLKSLPNGVFDELTS 53

Query: 355 RSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
            ++  L  N +  LP   F     L  + L  N +  LP   F
Sbjct: 54  LTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 98.1 bits (245), Expect = 2e-24
 Identities = 42/110 (38%), Positives = 58/110 (52%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   + C  KGL  VP  +P + T L LE N +  LP   F    +L ++ LS
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60

Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           +NQI  +    F  L  LT L L+ N L  LP+GVF +L +L+ L +  N
Sbjct: 61  QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 30/102 (29%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C+   + C  KGL  VP  +P + T L                           
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL--------------------------- 33

Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
               LE N +  LP   F    +L ++ L QN I  LP   F
Sbjct: 34  ---ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  102 bits (255), Expect = 9e-24
 Identities = 44/342 (12%), Positives = 86/342 (25%), Gaps = 48/342 (14%)

Query: 100 PCRCADG-IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN 158
           P       +VD   + L  VP  LP  T  L L QN I+EL     +    LR + LS N
Sbjct: 27  PFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN 86

Query: 159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPD----------------------GVFAELF 196
           +I  +    F   + L  L +++N L  +                          F  L 
Sbjct: 87  RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLT 146

Query: 197 RLRTLRISENSF-------ICDCHLSWLH-----RWLKRYPRLGLYTKCFAPSHIKGQNI 244
           +L  L +S   F       +   HLS +        +K      L        H+     
Sbjct: 147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN 206

Query: 245 LDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG 304
                       +    +    +                              P      
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-----------LSELTRGPTLLNVT 255

Query: 305 IVDCREKGLNKVPILLPEATTELTY--MVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQN 362
           +          V +        + Y  + ++   +++    +  +     +     ++  
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315

Query: 363 DITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
                    ++ +  +    L  +D   +      +      
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 48/260 (18%), Positives = 84/260 (32%), Gaps = 67/260 (25%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
              N  T       + L RL+TL +  N      +   +    K    L           
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTKNMSSLETLDVSL---- 412

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
               N L+   ++  C+                                          E
Sbjct: 413 ----NSLNSHAYDRTCAWA----------------------------------------E 428

Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
           +   L L  N +T    +      +++ +DL  N+I  +  D    L++L  L + +N L
Sbjct: 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQL 485

Query: 185 TYLPDGVFAELFRLRTLRISENSFICDC-HLSWLHRWLKRYPRLGLYTKCFAPSHIKGQN 243
             +PDGVF  L  L+ + + +N + C C  + +L  W+ ++              ++   
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH-----------SGVVRNSA 534

Query: 244 ILDIPEHEFKCSGSSMETRS 263
               P+   KCSGS    RS
Sbjct: 535 GSVAPD-SAKCSGSGKPVRS 553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 108 VDCREKGLNKVPILL------PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS 161
           ++ +   ++  P +       P + T L   QN  T+   +  +  KRL+ + L +N + 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR----LRTLRISEN 206
                A    K+++SL   + +L  L    +         +  L +S N
Sbjct: 391 NFFKVALM-TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 40/291 (13%), Positives = 81/291 (27%), Gaps = 44/291 (15%)

Query: 127 TELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L L  ND   LP  K F N  +L  + LS  +  ++ +     L  L+ + L+  +  
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH-LSCILLDLVSY- 181

Query: 186 YLPDGVFAELFRLRTLR-------ISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238
           ++  G    L    T          S  S   +  ++ L           L       + 
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH---------LQLSNIKLND 232

Query: 239 IKGQNILDIPEHEFKCSGSSMET--RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCP 296
              Q ++       +       T    +   +     F  +   PVE             
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN---------- 282

Query: 297 HPCRCADGIVDCREKGLNKVPILLPEATTELTY-MVSIDRVDKVLLYSYISNNFKRWTN- 354
                   I +     + +         +E     + I+ V   +        +  +   
Sbjct: 283 --------IYNLT---ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
             + L  +D   +      +      +   QN  T+   +  +  KRL+ +
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.1 bits (143), Expect = 9e-10
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 5/97 (5%)

Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
                L  +D   +      +      ++ ++N  +         LK L +L L  N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 186 YLPD--GVFAELFRLRTLRISENSF---ICDCHLSWL 217
                  +   +  L TL +S NS      D   +W 
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 13/80 (16%), Positives = 25/80 (31%)

Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
             ++           ++ +  +    LS +    + +       S T L    N  T   
Sbjct: 310 EHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV 369

Query: 189 DGVFAELFRLRTLRISENSF 208
               + L RL+TL +  N  
Sbjct: 370 FQGCSTLKRLQTLILQRNGL 389

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 30/237 (12%), Positives = 54/237 (22%), Gaps = 36/237 (15%)

Query: 5   LNNNNLTYLPD-GVFAELFRLRTLRISENSF-------ICDCHLSWLH-----RWLKRYP 51
           L+ N+   LP    F  L +L  L +S   F       +   HLS +        +K   
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 52  RLGLYTKCFAPSHIKGQNILDIPEH----------------EFKCSGPVEKPTGECAAEP 95
              L        H+                           +          T       
Sbjct: 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 96  SCPHPCRCADGIVDCREKGLNKVPILL-PEATTELRLEQNDITELPPKAFANY-----KR 149
                       ++   K   K+     P     L +    ITE   +    Y     K 
Sbjct: 248 GPTL-LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 150 LRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           L    +            +     +    L+ ++  ++             L  ++N
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 94.6 bits (236), Expect = 3e-23
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C+   VDC  K L  VP  +P  T  L L  N IT+L P  F    +L R+DL 
Sbjct: 3   CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD 62

Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LS 215
            NQ++ +    F  L  LT L+LN+N L  +P G F  L  L  + +  N + C C  + 
Sbjct: 63  NNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122

Query: 216 WLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSS 258
           +L RW+ ++           P  + G   LD P+   +CSG++
Sbjct: 123 YLSRWISQH-----------PGLVFGYLNLD-PDSA-RCSGTN 152

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 30/102 (29%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C+   VDC  K L  VP  +P  T  L                           
Sbjct: 3   CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVL--------------------------- 35

Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
               L  N IT+L P  F    +L R+ L+ N +T LP   F
Sbjct: 36  ---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 93.5 bits (233), Expect = 8e-23
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLS 156
           CP  C C   +V+C+   L  VP  +P     L L  N IT+L P  F +   L+++  +
Sbjct: 6   CPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFN 65

Query: 157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LS 215
            N+++ +    F  L  LT L LN+N+L  +P G F  L  L  + +  N + C+C  + 
Sbjct: 66  SNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125

Query: 216 WLHRWLKRYP 225
           +L  W+  + 
Sbjct: 126 YLRNWVADHT 135

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 30/102 (29%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTN 354
           CP  C C   +V+C+   L  VP  +P     L                           
Sbjct: 6   CPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRL--------------------------- 38

Query: 355 RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
               L  N IT+L P  F +   L+++    N +T +P   F
Sbjct: 39  ---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.3 bits (235), Expect = 2e-21
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L    I E+   AFA    ++++ +  N I  +    FQ +  LT L L  N+L+ 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 187 LPDGVFAELFRLRTLRISEN 206
           LP G+F    +L TL +S N
Sbjct: 132 LPRGIFHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.3 bits (227), Expect = 2e-20
 Identities = 17/81 (20%), Positives = 38/81 (46%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             +  + + + +LP     +++++  ++L+  QI ++   AF    ++  L +  N + Y
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107

Query: 187 LPDGVFAELFRLRTLRISENS 207
           LP  VF  +  L  L +  N 
Sbjct: 108 LPPHVFQNVPLLTVLVLERND 128

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.7 bits (223), Expect = 5e-20
 Identities = 26/82 (31%), Positives = 40/82 (48%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            +L +  N I  LPP  F N   L  + L +N +S +    F     LT+L+++NNNL  
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 187 LPDGVFAELFRLRTLRISENSF 208
           + D  F     L+ L++S N  
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRL 177

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L +  N +  L          L+ +DLS N +  V  +  Q    L +L L++N++  
Sbjct: 275 ERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVT 332

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           L          L+ L +S N + C+   +      +
Sbjct: 333 LKLSTHH---TLKNLTLSHNDWDCNSLRALFRNVAR 365

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 85.1 bits (211), Expect = 2e-18
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L LE+ND++ LP   F N  +L  + +S N + ++  D FQ   SL +L L++N LT+
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179

Query: 187 LPDGVFAELFRLRTLRISENSF 208
           +   +      L    +S N  
Sbjct: 180 VDLSLIP---SLFHANVSYNLL 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 9/101 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L+L+ N++T+       NY  L  +DLS N++ K+    F  ++ L  L ++NN L  
Sbjct: 229 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
           L       +  L+ L +S N      HL  + R   ++ RL
Sbjct: 287 LN-LYGQPIPTLKVLDLSHN------HLLHVERNQPQFDRL 320

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 8/105 (7%)

Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISK 162
           V  R+     +   L     +       I       +           + +    + + K
Sbjct: 3   VKPRQPEYKCIDSNLQ---YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 59

Query: 163 VAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
           +        + +  L LN+  +  +    FA    ++ L +  N+
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 19/99 (19%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-------------- 172
           T L +  N++  +    F     L+ + LS N+++ V +     L               
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203

Query: 173 --SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
             ++  L  ++N++  +   V  E   L  L++  N+  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT 239

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.0 bits (151), Expect = 9e-11
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           L  V + L  +     +  N ++ L          +  +D S N I+ V          L
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVNV---EL 228

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           T L L +NNLT            L  + +S N
Sbjct: 229 TILKLQHNNLTDTA--WLLNYPGLVEVDLSYN 258

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N +  +       + RL  + L  N I  + +     LK   +LTL++N+   
Sbjct: 298 KVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLK---NLTLSHNDWDC 353

Query: 187 LPDGVFAELFR-LRTLRISENSFICDCHLSWLHR 219
                   LFR +    + +    C       H 
Sbjct: 354 NS---LRALFRNVARPAVDDADQHCKIDYQLEHG 384

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
             + + + +LP     +++++  + L    I E+   AFA    +++
Sbjct: 51  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 97

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            +  N I  LPP  F N   L  + LE+ND++ LP   F N  +L  
Sbjct: 99  YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L    I E+   AFA    ++++ +  N I  LPP  F N   L  
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           LE+ND++ LP   F N  +L  + +  N++  +    F     L+ 
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 48
           L++N++  L          L+ L +S N + C+   +      +
Sbjct: 325 LDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRNVAR 365

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           +L+ N++T+       NY  L  + L  N++ ++    F   +RL R
Sbjct: 232 KLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 6/45 (13%), Positives = 16/45 (35%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
            +  N++  +    F     L+ ++L  N +T +      +    
Sbjct: 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L  N++ ++    F   +RL R+ +  N +  L          L+ 
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV 299

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.6 bits (235), Expect = 3e-21
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L    I E+   AFA    ++++ +  N I  +    FQ +  LT L L  N+L+ 
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137

Query: 187 LPDGVFAELFRLRTLRISEN 206
           LP G+F    +L TL +S N
Sbjct: 138 LPRGIFHNTPKLTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 92.3 bits (229), Expect = 2e-20
 Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 93  AEPSCP-HPCRCADGIVDC--REKGLNKVPILLPEAT--------TELRLEQNDITELPP 141
            +P  P + C  ++   DC   +  ++     +              +  + + + +LP 
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 142 KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTL 201
               +++++  ++L+  QI ++   AF    ++  L +  N + YLP  VF  +  L  L
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 202 RISENS 207
            +  N 
Sbjct: 129 VLERND 134

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 91.1 bits (226), Expect = 6e-20
 Identities = 26/81 (32%), Positives = 40/81 (49%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            +L +  N I  LPP  F N   L  + L +N +S +    F     LT+L+++NNNL  
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 161

Query: 187 LPDGVFAELFRLRTLRISENS 207
           + D  F     L+ L++S N 
Sbjct: 162 IEDDTFQATTSLQNLQLSSNR 182

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 85.0 bits (210), Expect = 6e-18
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L LE+ND++ LP   F N  +L  + +S N + ++  D FQ   SL +L L++N LT+
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185

Query: 187 LPDGVFAELFRLRTLRISENSF 208
           +   +      L    +S N  
Sbjct: 186 VDLSLIP---SLFHANVSYNLL 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 84.6 bits (209), Expect = 7e-18
 Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           +N V   +    T L+L+ N++T+       NY  L  +DLS N++ K+    F  ++ L
Sbjct: 223 INVVRGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
             L ++NN L  L       +  L+ L +S N      HL  + R   ++ RL
Sbjct: 281 ERLYISNNRLVALN-LYGQPIPTLKVLDLSHN------HLLHVERNQPQFDRL 326

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 2e-13
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 19/99 (19%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-------------- 172
           T L +  N++  +    F     L+ + LS N+++ V +     L               
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209

Query: 173 --SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI 209
             ++  L  ++N++  +   V  E   L  L++  N+  
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 24/111 (21%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-- 172
           L  V + L  +     +  N ++ L          +  +D S N I+ V       L   
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIA-----VEELDASHNSINVVRGPVNVELTIL 237

Query: 173 -----------------SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
                             L  + L+ N L  +    F ++ RL  L IS N
Sbjct: 238 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 20/138 (14%), Positives = 38/138 (27%), Gaps = 18/138 (13%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N +  +       + RL  + L  N I  + +       +L +LTL++N+   
Sbjct: 304 KVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDC 359

Query: 187 LPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL 245
                   LFR +    + +    C       H    +                  + + 
Sbjct: 360 NS---LRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES----------DKPYLDRLLQ 406

Query: 246 DIPEHEFKCSGSSMETRS 263
            I            + R 
Sbjct: 407 YIALTSVVEKVQRAQGRC 424

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 24/199 (12%), Positives = 54/199 (27%), Gaps = 29/199 (14%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L++N++  L          L+ L +S N + C+   +      +                
Sbjct: 331 LDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRNVAR---------------- 371

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
                   + + +  C    +   G C  E   P+  R    I         +       
Sbjct: 372 ------PAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425

Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK----VAVDAFQGLKSLTSLTLN 180
           AT  +   Q+    +  +     +   +++   N++      +  +  Q  + L  L   
Sbjct: 426 ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485

Query: 181 NNNLTYLPDGVFAELFRLR 199
            +            L R  
Sbjct: 486 IDTNLRRYRLPKDGLARSS 504

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
             + + + +LP     +++++  + L    I E+   AFA    +++
Sbjct: 57  TFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQK 103

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           +  N I  LPP  F N   L  + LE+ND++ LP   F N  +L  
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 8e-07
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            L    I E+   AFA    ++++ +  N I  LPP  F N   L  
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            LE+ND++ LP   F N  +L  + +  N++  +    F     L+ 
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           +L+ N++T+       NY  L  + L  N++ ++    F   +RL R
Sbjct: 238 KLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 6/45 (13%), Positives = 16/45 (35%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL 402
            +  N++  +    F     L+ ++L  N +T +      +    
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L  N++ ++    F   +RL R+ +  N +  L          L+ 
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKV 305

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.4 bits (219), Expect = 3e-19
 Identities = 34/277 (12%), Positives = 73/277 (26%), Gaps = 61/277 (22%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L+ N I ++  +      +L+ +DLS N+++ +    FQ    +T ++L NN L  
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
           +          L    +  N F C      L  +  +  R+           +  Q +  
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGT----LRDFFSKNQRV---------QTVAKQTVKK 274

Query: 247 IPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIV 306
           +                    EEC+     +           C  +   P   R      
Sbjct: 275 LTGQNE---------------EECTVPTLGHYG-------AYCCEDLPAPFADRLIA--- 309

Query: 307 DCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITE 366
              ++  + +       T  L                       +   R     +     
Sbjct: 310 --LKRKEHALLSGQGSETERLE-----------------CERENQARQREIDALKEQYRT 350

Query: 367 LPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           +  +     +    +  ++  + E        +  L 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 85.3 bits (211), Expect = 3e-18
 Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 114 GLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS 173
            ++++           ++  + + +       +   ++ +DLS N +S+++         
Sbjct: 1   AIHEIKQNGNR-YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           L  L L++N L    D     L  LRTL ++ N
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 26/205 (12%), Positives = 46/205 (22%), Gaps = 32/205 (15%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L NN L  +          L    +  N F C     +  +  +                
Sbjct: 221 LRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV-------------QT 266

Query: 65  IKGQNILDIPEHEF-KCSGPVE-KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL 122
           +  Q +  +      +C+ P        C  +   P   R                  L 
Sbjct: 267 VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL---------------IALK 311

Query: 123 PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
            +    L  + ++   L  +     +  R ID  K Q   V        ++  +L     
Sbjct: 312 RKEHALLSGQGSETERLECERENQAR-QREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 183 NLTYLPDGVFAELFRLRTLRISENS 207
            L             L         
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG-LKS 173
           +++V     +    + L  N IT L         R++ +DL  N+I  V          +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
           L  L L  N +  +   V     +L+TL +S N       L+++    +    +
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN------KLAFMGPEFQSAAGV 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 9e-15
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL L  N ++++     A + +L  ++LS N + +      + L +L +L LNNN +  
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQE 94

Query: 187 LPDGVFAELFRLRTLRISENSF 208
           L          + TL  + N+ 
Sbjct: 95  LL-----VGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N + EL          +  +  + N IS+V+    QG K   ++ L NN +T 
Sbjct: 83  RTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITM 134

Query: 187 LPDGVFAELFRLRTLRISENSF 208
           L D       R++ L +  N  
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEI 156

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 4/46 (8%), Positives = 19/46 (41%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
           ++  + + +       +   ++ + L  N ++++     A + +L 
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLR 403
              N+I+ +           + I L  N IT L         R++
Sbjct: 106 AANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQ 147

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
            L  N IT L         R++ + L+ N+I  +     
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           L  N ++++     A + +L  + L  N + E       +   LR 
Sbjct: 41  LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRT 84

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
              ++  + + +       +   ++ +DLS N +S+++         L  L L++N L  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 187 LPDGVFAELFRLRTLRISEN 206
             D     L  LRTL ++ N
Sbjct: 73  TLD--LESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 3e-18
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L+ N I ++  +      +L+ +DLS N+++ +    FQ    +T ++L NN L  
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL 228

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 222
           +          L    +  N F C     +  +  +
Sbjct: 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG-LKS 173
           +++V     +    + L  N IT L         R++ +DL  N+I  V          +
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           L  L L  N +  +   V     +L+TL +S N
Sbjct: 171 LEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL L  N ++++     A + +L  ++LS N + +      + L +L +L LNNN +  
Sbjct: 37  KELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQE 94

Query: 187 LPDGVFAELFRLRTLRISENSF 208
           L          + TL  + N+ 
Sbjct: 95  LL-----VGPSIETLHAANNNI 111

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N + EL          +  +  + N IS+V+    QG K   ++ L NN +T 
Sbjct: 83  RTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK---NIYLANNKITM 134

Query: 187 LPDGVFAELFRLRTLRISEN 206
           L D       R++ L +  N
Sbjct: 135 LRDLDEGCRSRVQYLDLKLN 154

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.5 bits (168), Expect = 4e-13
 Identities = 12/63 (19%), Positives = 25/63 (39%)

Query: 144 FANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI 203
             N  R +   ++ + + +      Q   ++  L L+ N L+ +     A   +L  L +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 204 SEN 206
           S N
Sbjct: 66  SSN 68

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 4/47 (8%), Positives = 19/47 (40%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
           ++  + + +       +   ++ + L  N ++++     A + +L  
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLT 185
           T + L  N +  +   A    + L   DL  N      + D F   + + ++        
Sbjct: 217 TWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

Query: 186 YLPDGVFAELFRLRTLRISENSFICD 211
              +     +  L        ++ C+
Sbjct: 276 TGQNEEECTVPTL----GHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
           L  N IT L         R++ + L+ N+I  +     
Sbjct: 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
              N+I+ +           + I L  N IT L         R++ 
Sbjct: 106 AANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQY 148

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLK 48
           L NN L  +          L    +  N F C     +  +  +
Sbjct: 221 LRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
           L  N ++++     A + +L  + L  N + E       +   LR +
Sbjct: 41  LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 22/120 (18%)

Query: 108 VDCREKGLNKVPILLPEATTELRLEQNDITELPPK--------------------AFANY 147
           +          P      T +  L++  +T+   +                         
Sbjct: 3   ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62

Query: 148 KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
             +R + L  N++  ++    + L +LT L L  N L  LP+GVF +L  L+ L + EN 
Sbjct: 63  PNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 28/134 (20%), Positives = 43/134 (32%), Gaps = 25/134 (18%)

Query: 96  SCPHPCRCADGIVDCREKGLNKVP-----------------------ILLPEATTELRLE 132
             P          + ++K +                           I        L L 
Sbjct: 12  IFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALG 71

Query: 133 QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
            N + ++   A      L  + L+ NQ+  +    F  L +L  L L  N L  LPDGVF
Sbjct: 72  GNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

Query: 193 AELFRLRTLRISEN 206
            +L  L  L ++ N
Sbjct: 130 DKLTNLTYLNLAHN 143

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 29/81 (35%), Positives = 39/81 (48%)

Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
            T L L  N +  LP   F     L+ + L +NQ+  +    F  L +LT L L +N L 
Sbjct: 87  LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 186 YLPDGVFAELFRLRTLRISEN 206
            LP GVF +L  L  L +S N
Sbjct: 147 SLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 108 VDCREKGLNKVP---ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
           +      L  +P           EL L +N +  LP   F     L  ++L+ NQ+  + 
Sbjct: 90  LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP 149

Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
              F  L +LT L L+ N L  LP+GVF +L +L+ LR+ +N
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 108 VDCREKGLNKVPI---LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
           +   E  L  +P          T L L  N +  LP   F     L  +DLS NQ+  + 
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173

Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKR 223
              F  L  L  L L  N L  +PDGVF  L  L+ + + +N + C C  + +L  W+ +
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233

Query: 224 YP 225
           + 
Sbjct: 234 HS 235

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 17/119 (14%)

Query: 294 SCPHPCRCADGIVDCREKGLNKVPILLPEATT--------ELTYMVSIDRVDKVLLYSYI 345
             P          + ++K +          +         ++  +  I  +   + Y  +
Sbjct: 12  IFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VRYLAL 70

Query: 346 SNN-------FKRWTNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
             N        K  TN +   L  N +  LP   F     L+ + L +N +  LP   F
Sbjct: 71  GGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 306 VDCREKGLNKVPILLPEATTE-------LTYMVSIDRVDKVLLYSYISNN------FKRW 352
           +          P      T +       +T  V+ + ++ +      +++       +  
Sbjct: 3   ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL 62

Query: 353 TNRSR-RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
            N     L  N + ++   A      L  + L  N +  LP   F     L+ 
Sbjct: 63  PNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L    N +  L   AF    +L  + L  NQI ++  D       +  L  ++N L Y
Sbjct: 576 GLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY 633

Query: 187 LPDGVFAE-LFRLRTLRISENSF 208
           +P+   A+ ++ + ++  S N  
Sbjct: 634 IPNIFNAKSVYVMGSVDFSYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 6e-14
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
             +    N I                     + LS N+I K   + F     ++++ L+N
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706

Query: 182 NNLTYLPD-------GVFAELFRLRTLRISENSF 208
           N +T +P+       G +   + L T+ +  N  
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.1 bits (174), Expect = 2e-13
 Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
           T+L+L+ N I E+P    A   ++  +  S N++  +  +   + +  + S+  + N + 
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 186 YLPDGVFA-----ELFRLRTLRISENSF 208
                +       +     T+ +S N  
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEI 685

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 127 TELRLEQNDITELP-------PKAFANYKRLRRIDLSKNQISKVAVD-AFQGLKSLTSLT 178
           + + L  N +T +P          + N   L  IDL  N+++ ++ D     L  L+++ 
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759

Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
           ++ N  +  P        +L+   I          + 
Sbjct: 760 VSYNCFSSFPTQPL-NSSQLKAFGIRHQRDAEGNRIL 795

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 30/122 (24%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK------NQISKVAVDAFQGLKSLTSLTLN 180
           + + +  N  +  P     N  +L+   +        N+I +          SL  L + 
Sbjct: 756 SNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 181 NNNLTYLPDGVFAEL-----------------------FRLRTLRISENSFICDCHLSWL 217
           +N++  + + +  +L                         +  L   +   I  C    +
Sbjct: 815 SNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGI 874

Query: 218 HR 219
            R
Sbjct: 875 ER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 16/108 (14%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV---------DAFQGLKSLTSL 177
           T++ L         P    +   L+ ++++ N+    A          D       +   
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553

Query: 178 TLNNNNLTYLPDGV-FAELFRLRTLRISENSF-----ICDC-HLSWLH 218
            +  NNL   P      ++ +L  L    N             L+ L 
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLK 601

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 62/232 (26%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L              +L  L+ L    +S      L                 +      
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE----ELTPDMSEERKHRIRM 385

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
              +  LD  +                               + D  +  +N+ P + P 
Sbjct: 386 HYKKMFLDYDQRL----------------------------NLSDLLQDAINRNPEMKPI 417

Query: 125 AT--------TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV----------- 165
                     T++    N IT +   A     +L+ I  + +  +   +           
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 166 --------DAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISENSF 208
                    ++  LK LT + L N  N+T LPD    +L  L++L I+ N  
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRG 527

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 10/103 (9%)

Query: 116 NKVPILLPEA-TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           +            +   +     E    +++N K L  ++L          D    L  L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 175 TSLTLNNNNLTYLPDGV---------FAELFRLRTLRISENSF 208
            SL +  N                       +++   +  N+ 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 11/74 (14%), Positives = 21/74 (28%)

Query: 134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA 193
           +   + P     N  R+  + L+         DA   L  L  L+   ++ T        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 194 ELFRLRTLRISENS 207
           E          ++ 
Sbjct: 369 EELTPDMSEERKHR 382

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 1/83 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLT 185
           T L L         P A      L+ +    +  +        + L    S    +    
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 186 YLPDGVFAELFRLRTLRISENSF 208
           +          RL    + +++ 
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAI 408

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF 396
            L  N+I + P + FA    +  I L  N +T +P  + 
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 5/51 (9%)

Query: 359 LEQNDITELPPKAFA-----NYKRLRRIRLEQNDITELPPKAFANYKRLRR 404
              N I                     + L  N+I + P + FA    +  
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            +L +     T   P   +    L R+ +    ++   +    GL SLT L ++++    
Sbjct: 69  KDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 187 LPDGVFAELFRLRTLRISENSFICD 211
                   L ++ ++ +S N  I D
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITD 151

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKN-QISKVAVDAFQGLKSLTSLTLNNNNLT 185
           T L +  +   +          ++  IDLS N  I+ +     + L  L SL +  + + 
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVH 172

Query: 186 YLPDGVFAELFRLRTLRISEN 206
                   +  +L  L     
Sbjct: 173 DYRG--IEDFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           +A     L Q+    +     A    L  I L+   ++ +     +   ++  LT+NN +
Sbjct: 23  KAYLNGLLGQSSTANITE---AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77

Query: 184 LTYLPDGVFAELFRLRTLRISEN 206
            T       + L  L  LRI   
Sbjct: 78  ATNY--NPISGLSNLERLRIMGK 98

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 127 TELRLEQND-ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             + L  N  IT++ P        L+ +++  + +        +    L  L   +  + 
Sbjct: 139 NSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 133 QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF 192
             D   +P   F  Y       L ++  + +       + SLT +TL N N+T L     
Sbjct: 11  SQDNVNIPDSTFKAYLNG---LLGQSSTANITEA---QMNSLTYITLANINVTDLTG--I 62

Query: 193 AELFRLRTLRISEN 206
                ++ L I+  
Sbjct: 63  EYAHNIKDLTINNI 76

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L    N +    P AF +  +L  ++L+ NQI+++  +     + + +L+  +N L Y
Sbjct: 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 187 LPDGVFAE-LFRLRTLRISENSF 208
           +P+   A+ +  +  +  S N  
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 20/111 (18%)

Query: 127 TELRLEQNDITELPPKAFA-------NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTL 179
           + +    N+I  +  K F            +  I+LS NQISK   + F     L+S+ L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 180 NNNNLTYLPDGV-------FAELFRLRTLRISENSF------ICDCHLSWL 217
             N LT +P          F   + L ++ +  N             L +L
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 12/90 (13%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG-LKSLTSLTLNNNNLT 185
             L L  N ITE+P       +++  +  + N++  +        +  ++++  + N + 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 186 YLPDGVFAE-------LFRLRTLRISENSF 208
            +    F            + ++ +S N  
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 127 TELRLEQNDITELP-------PKAFANYKRLRRIDLSKNQISKVAVD-AFQGLKSLTSLT 178
           + + L  N +TE+P        + F N   L  IDL  N+++K++ D     L  L  + 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
           L+ N+ +  P         L+   I            
Sbjct: 520 LSYNSFSKFPTQPL-NSSTLKGFGIRNQRDAQGNRTL 555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 127 TELRLEQNDITELP--------PKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSL 177
             + +  N                     ++++ I +  N +    V  + Q +K L  L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
               N L       F    +L +L ++ N  
Sbjct: 336 ECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 5/93 (5%)

Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLP 188
              + N      P+       L ++ +  N I KV         +++ L + +N    + 
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISID 603

Query: 189 DGVFAELFRLRTLRISENSF--ICDCHLSWLHR 219
                         +  +    I  C    + R
Sbjct: 604 LSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 56/230 (24%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLH-----RWLKRYPRLGLYTKC 59
           L     +        +L  L  L +  +    +  L            ++  ++ ++ + 
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 60  FAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP 119
               +   ++  D+ +                             D I    ++   K  
Sbjct: 148 TFVDYDPREDFSDLIK-----------------------------DCINSDPQQKSIKKS 178

Query: 120 ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-------------- 165
             +    T++    N+IT +   A     +LR+  +  +      +              
Sbjct: 179 SRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 166 -----DAFQGLKSLTSLTL-NNNNLTYLPDGVFAELFRLRTLRISENSFI 209
                  +  LK LT + + N  NLT LP      L  ++ + ++ N  I
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 1/83 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLT 185
           T L LE    +   P A      L  + L  +           +G+ +  S         
Sbjct: 84  TGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM 143

Query: 186 YLPDGVFAELFRLRTLRISENSF 208
           +          R     + ++  
Sbjct: 144 HYQKTFVDYDPREDFSDLIKDCI 166

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 9e-07
 Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG--------LKSLTSLT 178
           T++ +         P        ++ I+++ N+                    + +  + 
Sbjct: 252 TDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311

Query: 179 LNNNNLTYLP-DGVFAELFRLRTLRISENSF 208
           +  NNL   P +    ++ +L  L    N  
Sbjct: 312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T+L++  NDI ++  K   N   +  +D+  N    + +             L  +    
Sbjct: 569 TQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

Query: 187 LPDGVFAELFR 197
           +      ++ R
Sbjct: 626 IRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 1/74 (1%)

Query: 137 TELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVF-AEL 195
              P  +  +  R+  + L     S    DA   L  L  L L ++             +
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 196 FRLRTLRISENSFI 209
               +    +   +
Sbjct: 130 SANMSDEQKQKMRM 143

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L +  N I+++      N  +L  + L+ NQ+    ++   GL +LT+L L+ N++T 
Sbjct: 268 KMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L ++ +   +  
Sbjct: 326 IRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N IT++ P   +N  +L  + +  N+I+ +   A Q L +L  L LN +N++ 
Sbjct: 69  EYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD 124

Query: 187 LPDGVFAELFRLRTLRISENSFI 209
           +     A L ++ +L +  N  +
Sbjct: 125 ISP--LANLTKMYSLNLGANHNL 145

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L + ++ + ++ P   AN   L  + L+ NQI  +       L SL   T   N +T 
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITD 213

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A + RL +L+I  N
Sbjct: 214 ITP--VANMTRLNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
                  N IT++ P   AN  RL  + +  N+I+ +       L  LT L +  N ++ 
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISD 257

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +      +L +L+ L +  N
Sbjct: 258 IN--AVKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.3 bits (160), Expect = 7e-12
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L++  N IT+L P   AN  +L  +++  NQIS +  +A + L  L  L + +N ++ 
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +       L +L +L ++ N
Sbjct: 280 ISV--LNNLSQLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL L +++I+++ P   AN  ++  ++L  N      +     +  L  LT+  + +  
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKD 169

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L  L +L ++ N
Sbjct: 170 VTP--IANLTDLYSLSLNYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.8 bits (151), Expect = 9e-11
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
               L++  +T++        + + ++ ++  +++ +     + L +L  L LN N +T 
Sbjct: 25  IRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITD 80

Query: 187 LPDGVFAELFRLRTLRISENS 207
           +     + L +L  L I  N 
Sbjct: 81  ISP--LSNLVKLTNLYIGTNK 99

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L L  N +     +       L  + LS+N I+ +       L  + S    N  + 
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L      I ++ P   A+     R  L K  ++ V     + L+S+T L +    +  
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVAS 58

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +       L  L  L ++ N
Sbjct: 59  IQG--IEYLTNLEYLNLNGN 76

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           L  +  L P     L +  N + +LP     N   L+ ID+  N + K+         SL
Sbjct: 123 LKALSDL-PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL----PDLPPSL 175

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
             +   NN L  LP+     L  L  +    NS 
Sbjct: 176 EFIAAGNNQLEELPE--LQNLPFLTAIYADNNSL 207

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 46/214 (21%), Positives = 67/214 (31%), Gaps = 56/214 (26%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSF------ICDC-HLSWLHRWLKRYPRLGLYT 57
           LNN  L+ LP+        L +L  S NS             L   +  LK    L    
Sbjct: 78  LNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---- 129

Query: 58  KCFAPSHIK-----GQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCRE 112
               P  ++        +  +P  E + S  ++                      +D   
Sbjct: 130 ----PPLLEYLGVSNNQLEKLP--ELQNSSFLKI---------------------IDVDN 162

Query: 113 KGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK 172
             L K+P L P +   +    N + ELP     N   L  I    N + K+         
Sbjct: 163 NSLKKLPDLPP-SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKL----PDLPL 215

Query: 173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           SL S+   NN L  LP+     L  L T+    N
Sbjct: 216 SLESIVAGNNILEELPE--LQNLPFLTTIYADNN 247

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 6e-09
 Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 28/122 (22%)

Query: 106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELP-------------------PKAFAN 146
           G  + RE  ++++   L     EL L    ++ LP                   P+   +
Sbjct: 53  GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQS 112

Query: 147 YKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
            K L   + +   +S +          L  L ++NN L  LP+        L+ + +  N
Sbjct: 113 LKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNN 163

Query: 207 SF 208
           S 
Sbjct: 164 SL 165

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 25/120 (20%)

Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV--- 163
           I+D     L K+P L P +   +    N + ELP     N   L  I    N + K+   
Sbjct: 157 IIDVDNNSLKKLPDLPP-SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL 213

Query: 164 ---------------AVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
                           +   Q L  LT++  +NN L  LPD        L  L + +N  
Sbjct: 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           L  +P  LP++ T L + +N  + L          L  ++ S N+I  +         SL
Sbjct: 269 LTDLP-ELPQSLTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL----CDLPPSL 319

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
             L ++NN L  LP    A   RL  L  S N  
Sbjct: 320 EELNVSNNKLIELP----ALPPRLERLIASFNHL 349

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 56/204 (27%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
             NN L  LP+     L  L T+    N       L  L                     
Sbjct: 222 AGNNILEELPE--LQNLPFLTTIYADNN------LLKTLPDLP---------------PS 258

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
           ++  N+ D    +                 P  P         +D  E   + +   LP 
Sbjct: 259 LEALNVRDNYLTDL----------------PELPQSLT----FLDVSENIFSGLSE-LPP 297

Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
               L    N+I  L          L  +++S N++ ++          L  L  + N+L
Sbjct: 298 NLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIEL----PALPPRLERLIASFNHL 349

Query: 185 TYLPDGVFAELFRLRTLRISENSF 208
             +P+        L+ L +  N  
Sbjct: 350 AEVPE----LPQNLKQLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             +    N + ELP     N   L  I    N +  +         SL +L + +N LT 
Sbjct: 218 ESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTD 271

Query: 187 LPDGVFAELFRLRTLRISENSF 208
           LP+        L  L +SEN F
Sbjct: 272 LPE----LPQSLTFLDVSENIF 289

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL +  N + ELP        RL R+  S N +++V     +  ++L  L +  N L  
Sbjct: 320 EELNVSNNKLIELPA----LPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLRE 371

Query: 187 LPDGVFAELFRLRTLRISEN 206
            PD        +  LR++ +
Sbjct: 372 FPD----IPESVEDLRMNSH 387

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 15/94 (15%)

Query: 116 NKVPILLPEATTELR-LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           ++     P    E R +  + + +   +      +   ++L+   +S +     +    L
Sbjct: 44  SEWERNAPPGNGEQREMAVSRLRDCLDR------QAHELELNNLGLSSL----PELPPHL 93

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
            SL  + N+LT LP+        L++L +  N+ 
Sbjct: 94  ESLVASCNSLTELPE----LPQSLKSLLVDNNNL 123

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL-------------KSL 174
           E     +++TE+P +A  N K       + ++  + A                    +  
Sbjct: 15  EPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA 73

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
             L LNN  L+ LP+        L +L  S NS
Sbjct: 74  HELELNNLGLSSLPE----LPPHLESLVASCNS 102

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 19/95 (20%)

Query: 127 TELRLEQNDITELPP---------------KAFANYKRLRRIDLSKNQISKVAVDAFQGL 171
            +L +E N + E P                +     + L+++ +  N + +         
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF----PDIP 415

Query: 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           +S+  L +N+  +    +       +L       +
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.7 bits (162), Expect = 4e-12
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L LE N I+++      +  +L  + L  N+I+ +       L  L +L+L +N ++ 
Sbjct: 112 KSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L +L+ L +S+N
Sbjct: 168 IVP--LAGLTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.8 bits (152), Expect = 8e-11
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L  N IT++     +   +L  + L  NQIS +      GL  L +L L+ N+++ 
Sbjct: 134 ESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD 189

Query: 187 LPDGVFAELFRLRTLRISENSF--ICDCHLSWL 217
           L     A L  L  L +           H S L
Sbjct: 190 LRA--LAGLKNLDVLELFSQECLNKPINHQSNL 220

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T+L L  N +T++ P    N K L  + L +N+I  +   + + LK L SL+L +N ++ 
Sbjct: 68  TKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD 123

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +       L +L +L +  N
Sbjct: 124 ING--LVHLPQLESLYLGNN 141

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 1e-09
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            ++    +DI  +          + ++ L+ N+++   +     LK+L  L L+ N +  
Sbjct: 46  DQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKD 101

Query: 187 LPDGVFAELFRLRTLRISEN 206
           L      +L +L++L +  N
Sbjct: 102 LSS--LKDLKKLKSLSLEHN 119

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            E       I ++ P     +    + +L K  ++         L S+  +  NN+++  
Sbjct: 2   GETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS 57

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +       L  +  L ++ N
Sbjct: 58  VQG--IQYLPNVTKLFLNGN 75

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 15/136 (11%), Positives = 44/136 (32%), Gaps = 9/136 (6%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L +N I++L     A  K L  ++L   +     ++    L    ++   + +L  
Sbjct: 178 QNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 235

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
               + ++        +  +       +S++        +               Q + +
Sbjct: 236 PE--IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF-----HGRVTQPLKE 288

Query: 247 IPEHEFKCSGSSMETR 262
           +    +   G+ ++T+
Sbjct: 289 VYTVSYDVDGTVIKTK 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T+L L  N I+ L P   +   +L  + L  NQIS +      GL +LT+L LN N L  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLED 301

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     + L  L  L +  N
Sbjct: 302 ISP--ISNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L L +N + ++ P   +N K L  + L  N IS +       L  L  L   NN ++ 
Sbjct: 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSD 345

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L  +  L    N
Sbjct: 346 VSS--LANLTNINWLSAGHN 363

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L    N I+++ P        L  + L+ NQ+  +       L +LT L L NN ++ 
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257

Query: 187 LPDGVFAELFRLRTLRISEN 206
           L     + L +L  L++  N
Sbjct: 258 LAP--LSGLTKLTELKLGAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            ++ +  N I ++ P   AN   L  + L  NQI+ +  D  + L +L  L L++N ++ 
Sbjct: 93  VDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD 148

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     + L  L+ L     
Sbjct: 149 ISA--LSGLTSLQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L    N ++++     AN   +  +    NQIS +       L  +T L LN+   T 
Sbjct: 334 QRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWTN 389

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLS 215
            P    A +    T++    + I    +S
Sbjct: 390 APVNYKANVSIPNTVKNVTGALIAPATIS 418

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 30/80 (37%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L L  N IT++ P    N   L R++LS N IS +   A  GL SL  L+  N     
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDL 170

Query: 187 LPDGVFAELFRLRTLRISEN 206
            P    A L  L  L IS N
Sbjct: 171 KP---LANLTTLERLDISSN 187

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            +  L + ++T+       +  ++  +   +  I  +  D  + L +LT +  +NN LT 
Sbjct: 27  MKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD 82

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +       L +L  + ++ N
Sbjct: 83  ITP--LKNLTKLVDILMNNN 100

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L+ ++  I  +          L +I+ S NQ++ +     + L  L  + +NNN +  
Sbjct: 49  TTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIAD 104

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L  L  L +  N
Sbjct: 105 ITP--LANLTNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 23/100 (23%)

Query: 127 TELRLEQNDITELPP-------------------KAFANYKRLRRIDLSKNQISKVAVDA 167
             L L  N I+++                     K  AN   L R+D+S N++S +    
Sbjct: 137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194

Query: 168 FQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
              L +L SL   NN ++ +       L  L  L ++ N 
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L    N I++L P   AN  R+ ++ L+    +   V+    +      T+ N     
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPN--TVKNVTGAL 411

Query: 187 LPDGVFAELFRLRTLRISENS 207
           +     ++        I+ N 
Sbjct: 412 IAPATISDGGSYTEPDITWNL 432

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 6/81 (7%)

Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
            +    +   I ++            +  L K  ++     +   L  +T+L  +   + 
Sbjct: 4   GSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK 59

Query: 186 YLPDGVFAELFRLRTLRISEN 206
            +       L  L  +  S N
Sbjct: 60  SIDG--VEYLNNLTQINFSNN 78

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L LE N I+++      +  +L  + L  N+I+ +       L  L +L+L +N ++ 
Sbjct: 115 KSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L +L+ L +S+N
Sbjct: 171 IVP--LAGLTKLQNLYLSKN 188

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L LE N I+++ P   A   +L+ + LSKN IS +   A  GLK+L  L L +     
Sbjct: 159 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLS 215
            P    + L    T++ ++ S +    +S
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T+L L  N +T++ P   AN K L  + L +N++  +   + + LK L SL+L +N ++ 
Sbjct: 71  TKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISD 126

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +       L +L +L +  N
Sbjct: 127 ING--LVHLPQLESLYLGNN 144

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            +  L++  +T+           + +I  + + I  V     Q L ++T L LN N LT 
Sbjct: 27  IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD 82

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L  L  L + EN
Sbjct: 83  IKP--LANLKNLGWLFLDEN 100

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           +E       I ++       +    + +L K  ++         L S+  +  NN+++  
Sbjct: 5   SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS 60

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +       L  +  L ++ N
Sbjct: 61  VQG--IQYLPNVTKLFLNGN 78

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           TEL L  N +  +     A  + ++ +DL+  QI+ V      GL +L  L L+ N +T 
Sbjct: 88  TELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITN 143

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L  L+ L I   
Sbjct: 144 ISP--LAGLTNLQYLSIGNA 161

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L+ N IT + P   A    L+ + +   Q+S +       L  LT+L  ++N ++ 
Sbjct: 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD 187

Query: 187 LPDGVFAELFRLRTLRISEN 206
           +     A L  L  + +  N
Sbjct: 188 ISP--LASLPNLIEVHLKNN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            ++   ++++T+      A+   +  +      ++ +  +  Q L +L  L L +N +T 
Sbjct: 22  IKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITD 77

Query: 187 LPDGVFAELFRLRTLRISEN 206
           L       L ++  L +S N
Sbjct: 78  LAP--LKNLTKITELELSGN 95

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L      +T +          L  ++L  NQI+ +     + L  +T L L+ N L  
Sbjct: 44  TTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKN 99

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWL 217
           +     A L  ++TL ++         L+ L
Sbjct: 100 VSA--IAGLQSIKTLDLTSTQITDVTPLAGL 128

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L+ + N I+++ P   A+   L  + L  NQIS V         +L  +TL N  +T 
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITN 231

Query: 187 LPDGVFAELFRLRTLRISENSFI 209
            P      L     ++    + I
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
            +   I  + P          +I   K+ ++         L  +T+L+     +T +   
Sbjct: 4   TQPTAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG- 58

Query: 191 VFAELFRLRTLRISEN 206
               L  L  L + +N
Sbjct: 59  -VQYLNNLIGLELKDN 73

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            E+ L+ N I+++ P   AN   L  + L+   I+   V     L       +   +   
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAP 253

Query: 187 LPDGVFAELFRLRTLRISENS 207
           +     ++     +  ++ N 
Sbjct: 254 IAPATISDNGTYASPNLTWNL 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 12/102 (11%)

Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
           +++  E GL  +P  LP   T L +  N++T LP         LR +++S NQ++ +   
Sbjct: 44  VLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP-V 98

Query: 167 AFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
              GL  L+  +    +L  LP G       L  L I  N  
Sbjct: 99  LPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQL 133

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 111 REKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
           R   + K+   L      L + ++ +T LP    A+   +  + +  N ++ +       
Sbjct: 27  RAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLP----AL 79

Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
              L +L ++ N LT LP         L  L I  N  
Sbjct: 80  PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPL 113

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           L  +P+L P    EL +  N +  LP    +    L ++    NQ++ + +        L
Sbjct: 133 LTSLPVLPP-GLQELSVSDNQLASLPA-LPSE---LCKLWAYNNQLTSLPML----PSGL 183

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
             L++++N L  LP         L  L    N  
Sbjct: 184 QELSVSDNQLASLPT----LPSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL 174
           L  +P+L      EL +  N +  LP         L ++    N+++ +          L
Sbjct: 173 LTSLPMLPS-GLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----ALPSGL 223

Query: 175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
             L ++ N LT LP         L+ L +S N
Sbjct: 224 KELIVSGNRLTSLP----VLPSELKELMVSGN 251

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 48/209 (22%), Positives = 66/209 (31%), Gaps = 52/209 (24%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSF------ICDC-HLSWLHRWLKRYPRLGLYT 57
           + +NNLT LP         LRTL +S N              LS     L   P L    
Sbjct: 68  IPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL---- 119

Query: 58  KCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 117
               PS +    I                        P  P   +     +   +  L  
Sbjct: 120 ----PSGLCKLWIFGNQLTSL----------------PVLPPGLQE----LSVSDNQLAS 155

Query: 118 VPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
           +P L  E   +L    N +T LP         L+ + +S NQ++ +          L  L
Sbjct: 156 LPALPSELC-KLWAYNNQLTSLPM----LPSGLQELSVSDNQLASLPTL----PSELYKL 206

Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISEN 206
              NN LT LP    A    L+ L +S N
Sbjct: 207 WAYNNRLTSLP----ALPSGLKELIVSGN 231

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 12/80 (15%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            +L    N +T LP    A    L+ + +S N+++ + V        L  L ++ N LT 
Sbjct: 204 YKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTS 255

Query: 187 LPDGVFAELFRLRTLRISEN 206
           LP         L +L +  N
Sbjct: 256 LPM----LPSGLLSLSVYRN 271

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
                 L  +P+L       L + +N +T LP  +  +      ++L  N +S+  + A 
Sbjct: 247 MVSGNRLTSLPMLPS-GLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQAL 304

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
           +    +TS    +  +    D   A   R         +
Sbjct: 305 R---EITSAPGYSGPIIR-FDMAGASAPRETRALHLAAA 339

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 7/101 (6%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK----VAVDAFQG 170
           L ++   L      L + Q        +    +  L  +DLS N        ++      
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 171 LKSLTSLTLNNNNLTYLPD---GVFAELFRLRTLRISENSF 208
             +L  L L N  +         + A   +L+ L +S NS 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 127 TELRLEQNDITELPPK-AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L L  N + +     +     +L  ++LS   + +V          L+ L L+ N L 
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLD 287

Query: 186 YLPDGVFAELFRLRTLRISENSFI 209
             P     EL ++  L +  N F+
Sbjct: 288 RNPS--PDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG------LKSLTSLTLN 180
            EL LE  ++T   P             L+   +S    DA+           L  L++ 
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 181 NNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSW 216
             +              L TL +S+N  + +  L  
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 9/98 (9%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
           DC    + ++ +   +    L  + N+IT+L         +L  +D S N+++++     
Sbjct: 176 DCSFNKITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---V 229

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
             L  LT    + N LT L     ++   L TL   + 
Sbjct: 230 TPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQT 264

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T+L    N+IT L     +    L  +    N+++ +       L  LT L  + N LT 
Sbjct: 67  TKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK 120

Query: 187 LPDGVFAELFRLRTLRISENS 207
           L     ++   L  L  + N+
Sbjct: 121 LD---VSQNPLLTYLNCARNT 138

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
               +  + +        T L    + IT++          L ++  + N I+ +     
Sbjct: 27  AFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTL---DL 81

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
               +LT L  ++N LT L       L +L  L    N 
Sbjct: 82  SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNK 117

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.8 bits (135), Expect = 9e-09
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
           +C    L K+ +      T L   +N +TE+     ++  +L  +D   N+         
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK--LDV 166

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
                LT+L  + N +T L     ++   L  L    N
Sbjct: 167 TPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
            C    +  + +      T L  + N +T L         +L  ++   N+++K+     
Sbjct: 70  ICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---V 123

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWL 217
                LT L    N LT +     +   +L  L    N  I    ++  
Sbjct: 124 SQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKLDVTPQ 169

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L  +   ITEL     +   +L  + L+  +++++ V        L SL+  N ++  
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELDVS---HNTKLKSLSCVNAHIQD 353

Query: 187 LPDGVFAELFRLRTLRISENSFI 209
                  ++  L     +E   I
Sbjct: 354 FSS--VGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
                  ++      +      L  +D   + I+ +     + L  LT L   +NN+T L
Sbjct: 22  SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL 79

Query: 188 PDGVFAELFRLRTLRISENSF 208
                ++   L  L    N  
Sbjct: 80  D---LSQNTNLTYLACDSNKL 97

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 107 IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVD 166
            + C +  L ++ +         +       ++      +  +L  +D     I+++   
Sbjct: 258 TLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITEL--- 312

Query: 167 AFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
                  L  L LNN  LT L     +   +L++L     
Sbjct: 313 DLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNA 349

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
           +C    + K+ +      T L    N +TE+         +L   D S N ++++     
Sbjct: 197 NCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---V 250

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
             L  LT+L     +L  +         +L   +      I +  ++
Sbjct: 251 STLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCRKIKELDVT 294

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 16/109 (14%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
           DC+  G+ ++ +        L L   ++TEL     ++  +L+ +      I      + 
Sbjct: 303 DCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDF--SSV 357

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWL 217
             + +L +          +P              ++ NS         L
Sbjct: 358 GKIPALNNNFEAEGQTITMP-----------KETLTNNSLTIAVSPDLL 395

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 19/116 (16%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLR-------RIDLSKN--- 158
           DC    L ++ +      T      N +TEL     +    L         IDL+ N   
Sbjct: 218 DCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277

Query: 159 ------QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
                    K+          L  L      +T L     ++  +L  L ++    
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTEL 330

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL + +N +  L     A    L R+ L  N++     D+   LK+L  L++ NN L  
Sbjct: 88  EELSVNRNRLKNLNGIPSAC---LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142

Query: 187 LPDGVFAELFRLRTLRISENSFICD 211
           +       L +L  L +  N  I +
Sbjct: 143 IVM--LGFLSKLEVLDLHGNE-ITN 164

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L +  N +  +         +L  +DL  N+I+         LK +  + L       
Sbjct: 131 EILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLS 215
            P     EL+   T++  +  +I   ++S
Sbjct: 187 EPVKYQPELYITNTVKDPDGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
                + ++I  L       +  L+ + LS NQIS   +   + L  L  L++N N L  
Sbjct: 44  QNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISD--LSPLKDLTKLEELSVNRNRLKN 99

Query: 187 LPDGVFAELFRLRTLRISENS 207
           L          L  L +  N 
Sbjct: 100 LNGI---PSACLSRLFLDNNE 117

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
           E       I ++ P          + +L K  ++   + + + L  + +   +N+N+  L
Sbjct: 1   ESIQRPTPINQVFP--DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSL 56

Query: 188 PDGVFAELFRLRTLRISEN 206
                     L+ L +S N
Sbjct: 57  AG--MQFFTNLKELHLSHN 73

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.6 bits (144), Expect = 8e-10
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 15/98 (15%)

Query: 115 LNKVPILLPEAT----TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG 170
            N+   LL E      +EL+L + +++ LP         +  +++++N +  +     + 
Sbjct: 46  RNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQ---ITVLEITQNALISLP----EL 98

Query: 171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
             SL  L   +N L+ LP+        L+ L +  N  
Sbjct: 99  PASLEYLDACDNRLSTLPE----LPASLKHLDVDNNQL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 7e-09
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
                 L+ +P  LP   T L + QN +  LP    A+   L  +D   N++S +     
Sbjct: 65  QLNRLNLSSLPDNLPPQITVLEITQNALISLPE-LPAS---LEYLDACDNRLSTLP---- 116

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           +   SL  L ++NN LT LP+        L  +    N
Sbjct: 117 ELPASLKHLDVDNNQLTMLPE----LPALLEYINADNN 150

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 13/98 (13%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
           D  +  L+ +P L       L ++ N +T LP    A    L  I+   NQ++ +     
Sbjct: 106 DACDNRLSTLPELPASLK-HLDVDNNQLTMLPE-LPAL---LEYINADNNQLTMLP---- 156

Query: 169 QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN 206
           +   SL  L++ NN LT+LP+        L  L +S N
Sbjct: 157 ELPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTN 190

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 5/110 (4%)

Query: 115 LNKVPILLPEATTELRLEQNDITELPPKAFANY---KRLRRIDLSKNQISKVAVDAFQGL 171
           L  +P  LPE+   L +  N +  LP     N+   +        +N+I+ +  +    L
Sbjct: 172 LTFLP-ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSL 229

Query: 172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWL 221
               ++ L +N L+       ++             F             
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 118 VPILLP---EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI-SKVAVDAFQGLKS 173
           + I+LP     +       N I+      F+ + +  +  L        V++     +  
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
            + L LN  NL+ LPD +     ++  L I++N+ 
Sbjct: 61  FSELQLNRLNLSSLPDNLPP---QITVLEITQNAL 92

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 109 DCREKGLNKVPILLPEAT----TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA 164
               + L     LL +AT      L L    + + P         L+ + +    + ++ 
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELP 120

Query: 165 VDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS 207
            D  Q    L +LTL  N L  LP    A L RLR L I    
Sbjct: 121 -DTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKV--------AVDAFQGLKSLTSL 177
             L L +N +  LP  + A+  RLR + +    +++++        A    QGL +L SL
Sbjct: 130 ETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 178 TLNNNNLTYLPDGVFAELFRLRTLRISENS 207
            L    +  LP    A L  L++L+I  + 
Sbjct: 189 RLEWTGIRSLPAS-IANLQNLKSLKIRNSP 217

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTL-NNNNL 184
             L++  + ++ L P A  +  +L  +DL     +       F G   L  L L + +NL
Sbjct: 209 KSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNL 266

Query: 185 TYLPDGVFAELFRLRTLRISENSFI 209
             LP      L +L  L +     +
Sbjct: 267 LTLPLD-IHRLTQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 127 TELRL-EQNDITELPPKAFANYKRLRRIDLS-KNQISKVAVDAFQGLKSLTSLTL-NNNN 183
            EL L     +   PP  F     L+R+ L   + +  +       L  L  L L    N
Sbjct: 232 EELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVN 289

Query: 184 LTYLPDGVFAELFRLRTLRISEN 206
           L+ LP    A+L     + +  +
Sbjct: 290 LSRLPSL-IAQLPANCIILVPPH 311

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 56.7 bits (136), Expect = 6e-09
 Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L L  N +  LPP A A  + L  +  S N +  V  D    L  L  L L NN L  
Sbjct: 466 THLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQ 522

Query: 187 LPD-GVFAELFRLRTLRISEN 206
                      RL  L +  N
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNNNLT 185
             L+   N +  +     AN  RL+ + L  N++ +  A+        L  L L  N+L 
Sbjct: 489 EVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

Query: 186 YLPD 189
               
Sbjct: 547 QEEG 550

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL L    I  +     A   +   ID S N+I K  +D F  L+ L +L +NNN +  
Sbjct: 22  RELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLVNNNRICR 78

Query: 187 LPDGVFAELFRLRTLRISENSFICD 211
           + +G+   L  L  L ++ N  + +
Sbjct: 79  IGEGLDQALPDLTELILTNN-SLVE 102

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
            +    N+I +L    F   +RL+ + ++ N+I ++     Q L  LT L L NN+L  L
Sbjct: 46  AIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 188 PD-GVFAELFRLRTLRISEN 206
            D    A L  L  L I  N
Sbjct: 104 GDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
             L +  N I  +          L  + L+ N + ++  +D    LKSLT L +  N +T
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 186 YLPD 189
               
Sbjct: 127 NKKH 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L    +  +         +L++++LS+N+I        + L +LT L L+ N L  
Sbjct: 52  EFLSLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 187 LPD-GVFAELFRLRTLRISEN 206
           +       +L  L++L +   
Sbjct: 110 ISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 123 PEATTELRLE--QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN 180
           P A  EL L+  +++  ++     A +  L  + L    +  V+      L  L  L L+
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79

Query: 181 NNNLTYLPDGVFAELFRLRTLRISEN 206
            N +    D +  +L  L  L +S N
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGN 105

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
            +L L +N I             L  ++LS N++  ++ ++  + L+ L SL L N  +T
Sbjct: 74  KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

Query: 186 YLPD---GVFAELFRLRTL 201
            L D    VF  L +L  L
Sbjct: 134 NLNDYRESVFKLLPQLTYL 152

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L L +N  T E+P         L  +DLS N         F     L SL L++NN +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 186 -YLPDGVFAELFRLRTLRISENSF 208
             LP     ++  L+ L +S N F
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT- 185
             L +  N ++    +A +    L+ +++S NQ     +     LKSL  L+L  N  T 
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLP-LKSLQYLSLAENKFTG 283

Query: 186 YLPDGVFAELFRLRTLRISENSF 208
            +PD +      L  L +S N F
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF 306

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSLTSLTLNNNNL 184
             L L  N+ + ELP       + L+ +DLS N+ S ++         SL +L L++NN 
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 185 T-YLPDGVF-AELFRLRTLRISENSF-------ICDC-HLSWL 217
           +  +   +       L+ L +  N F       + +C  L  L
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 5e-07
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 7/84 (8%)

Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
             L +  N I+ ++     +    L  +D+S N  S   +       +L  L ++ N L+
Sbjct: 181 KHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS-TGIPFLGDCSALQHLDISGNKLS 236

Query: 186 -YLPDGVFAELFRLRTLRISENSF 208
                   +    L+ L IS N F
Sbjct: 237 GDFSRA-ISTCTELKLLNISSNQF 259

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
            EL L+ N  T ++PP   +N   L  + LS N +S     +   L  L  L L  N L 
Sbjct: 397 QELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 186 -YLPDGVFAELFRLRTLRISENSF 208
             +P      +  L TL +  N  
Sbjct: 456 GEIPQE-LMYVKTLETLILDFNDL 478

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV--AVDAFQGLKSLTSLTLNNNNL 184
             L L  + I       F     L  +DLS+N +S     + +      L  L +++N L
Sbjct: 80  ESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

Query: 185 TY-LPDGVFAELFRLRTLRISENSF 208
            +        +L  L  L +S NS 
Sbjct: 139 DFPGKVSGGLKLNSLEVLDLSANSI 163

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 127 TELRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISK---VAVDAFQGLKSLTSLTLNNN 182
             L +  N +              L  +DLS N IS    V      G   L  L ++ N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 183 NLT-YLPDGVFAELFRLRTLRISENSF 208
            ++  +     +    L  L +S N+F
Sbjct: 189 KISGDVD---VSRCVNLEFLDVSSNNF 212

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 127 TELRLEQNDITELP---PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN 183
           T + L    +         +  +   L  + LS + I+  +V  F+   SLTSL L+ N+
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNS 111

Query: 184 LT-YLPDGV-FAELFRLRTLRISENSF 208
           L+  +           L+ L +S N+ 
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTL 138

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 129 LRLEQNDIT-ELPPKAFANYKRLRRIDLSKNQISKVAVDAF----QGLKSLTSLTLNNNN 183
           L L+ ND+T E+P    +N   L  I LS N+++             L++L  L L+NN+
Sbjct: 471 LILDFNDLTGEIPS-GLSNCTNLNWISLSNNRLT----GEIPKWIGRLENLAILKLSNNS 525

Query: 184 LT-YLPDGVFAELFRLRTLRISENSF 208
            +  +P     +   L  L ++ N F
Sbjct: 526 FSGNIPAE-LGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 2/70 (2%)

Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLR 199
            +           +++           F    S+  L ++ N L+ Y+P      +  L 
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLF 659

Query: 200 TLRISENSFI 209
            L +  N   
Sbjct: 660 ILNLGHNDIS 669

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYL 187
            L      +T +         +L++++LS N++S       +   +LT L L+ N +  L
Sbjct: 46  FLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

Query: 188 PD-GVFAELFRLRTLRISEN 206
                  +L  L++L +   
Sbjct: 104 STIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 123 PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
           P    EL L+ +   E         ++ L  +      ++ +A      L  L  L L++
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSD 73

Query: 182 NNLTYLPDGVFAELFRLRTLRISEN 206
           N ++   + +  +   L  L +S N
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGN 98

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT 185
            +L L  N ++            L  ++LS N+I  ++ ++  + L++L SL L N  +T
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 186 YLPD---GVFAELFRLRTL 201
            L D    VF  L +L  L
Sbjct: 127 NLNDYRENVFKLLPQLTYL 145

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL      I ++     +  K  + + LS N I K  + +  G+++L  L+L  N +  
Sbjct: 28  VELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKK 84

Query: 187 LPDGVFAELFRLRTLRISEN 206
           + + + A    L  L IS N
Sbjct: 85  I-ENLDAVADTLEELWISYN 103

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
             L L +N I ++     A    L  + +S NQI+ +     + L +L  L ++NN +T 
Sbjct: 73  RILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITN 129

Query: 187 LPD-GVFAELFRLRTLRISEN 206
             +    A L +L  L ++ N
Sbjct: 130 WGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLN 180
           + +   EL +  N I  L          LR + +S N+I+    +D    L  L  L L 
Sbjct: 91  VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

Query: 181 NNNLT 185
            N L 
Sbjct: 149 GNPLY 153

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 19/99 (19%)

Query: 127 TELRLEQNDIT-----ELPPKAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSL 177
             +++ QN I       L  +  A  + L+ +DL  N  + +       A +   +L  L
Sbjct: 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249

Query: 178 TLNNNNLTYLPDGV--FAELFR------LRTLRISENSF 208
            LN+  L+    G     + F       L+TLR+  N  
Sbjct: 250 GLNDCLLS--ARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 18/100 (18%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
            E+ L  N I     +  +    + K L   + S     +V  +  + L+ L    L   
Sbjct: 35  KEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94

Query: 183 NLTYL--------PDGV--FAELFR----LRTLRISENSF 208
            L  +        P       +       L  L +  N  
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 21/119 (17%)

Query: 104 ADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQ 159
           A  + +       K    L      +   +N +     K +A    +++ L  + + +N 
Sbjct: 143 ARALQELAVNKKAKNAPPL----RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198

Query: 160 I-----SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV--FAELFR----LRTLRISENS 207
           I       + ++     + L  L L +N  T    G    A   +    LR L +++  
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFT--HLGSSALAIALKSWPNLRELGLNDCL 255

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 20/111 (18%), Positives = 29/111 (26%), Gaps = 31/111 (27%)

Query: 127 TELRLEQNDI----TELPP------KAFANYKRLRRIDLSKNQISKVAVDAF-QGLK--- 172
                          E+P       +A     +L  + LS N     A +     L    
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 173 SLTSLTLNNNNLTYLPDGV--FAELFR-------------LRTLRISENSF 208
            L  L L+NN L   P      A   +             LR++    N  
Sbjct: 123 PLEHLYLHNNGLG--PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 18/100 (18%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLT 178
               L+ + IT    K+          ++ I LS N I   A     +     K L    
Sbjct: 7   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 66

Query: 179 LNNNNLTYLPDGVFAELF----------RLRTLRISENSF 208
            ++     + D +   L           +L T+R+S+N+F
Sbjct: 67  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTSL 177
            +L+LE   ++    +  A         + + +S N I++  V    QGLK     L +L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
            L +  +T   D       +      LR L +  N  
Sbjct: 205 KLESCGVT--SDNCRDLCGIVASKASLRELALGSNKL 239

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 17/97 (17%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTSL 177
             +RL+   +TE   K  +        L  ++L  N++  V V    QGL++    +  L
Sbjct: 31  QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90

Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
           +L N  LT    G    +   R    L+ L +S+N  
Sbjct: 91  SLQNCCLT--GAGCGVLSSTLRTLPTLQELHLSDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 13/95 (13%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTSL 177
            +L L+   +T       +        L+ + LS N +    +    +GL      L  L
Sbjct: 88  QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147

Query: 178 TLNNNNLTYLPDGVFAELFR----LRTLRISENSF 208
            L   +L+       A + R     + L +S N  
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 127 TELRLEQNDITELPPKAFANY-KRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNN 181
             L ++  ++++          ++ + + L    +++        A +   +L  L L +
Sbjct: 6   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65

Query: 182 NNLTYLPDGV--FAELFR-----LRTLRISENSF 208
           N L     GV    +  +     ++ L +     
Sbjct: 66  NELG--DVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTSL 177
             L ++    T      F+      + L  + +S N++    V    QGL      L  L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375

Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
            L + +++         A        LR L +S N  
Sbjct: 376 WLADCDVS--DSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 17/97 (17%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-----QGLKSLTSL 177
             L+LE   +T    +       +   LR + L  N++  V +             L +L
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
            +    +T    G      + R    L+ L ++ N  
Sbjct: 262 WIWECGIT--AKGCGDLCRVLRAKESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 18/111 (16%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTSL 177
             L + +  IT              + L+ + L+ N++         + L      L SL
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318

Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSFICDCHLSWLHRWLK 222
            + + + T        F+ +      L  L+IS N  + D  +  L + L 
Sbjct: 319 WVKSCSFT--AACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLG 366

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 15/95 (15%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLN 180
            +L L    +T +     A         L  ++L+  Q+    +            L L 
Sbjct: 75  RQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ 134

Query: 181 NNNLTYLPDGV--FAELFR-----LRTLRISENSF 208
            N+L   P+      +L       + TLR+S N  
Sbjct: 135 LNSLG--PEACKDLRDLLLHDQCQITTLRLSNNPL 167

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 17/97 (17%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLK---SLTSL 177
            +L L+ N +     K        +  ++  + LS N ++   V    +GL    S+T L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188

Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
           +L +  L    +G+   A        L+ L ++ N  
Sbjct: 189 SLLHTGLG--DEGLELLAAQLDRNRQLQELNVAYNGA 223

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 16/96 (16%)

Query: 127 TELRLEQNDITELPPKAFA----NYKRLRRIDLSKNQISKVAVDAF-QGLK---SLTSLT 178
           T LRL  N +T                +  + L    +    ++     L     L  L 
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 179 LNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
           +  N            A   R    L  L +  N  
Sbjct: 218 VAYNGAG--DTAALALARAAREHPSLELLHLYFNEL 251

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 19/99 (19%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTS 176
           T L L  ND +      F          +  ++L  N +   + D   Q L     ++ S
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 177 LTLNNNNLTYLPDGV--FAELFR-----LRTLRISENSF 208
           L L  NNL          A+        + +L +S N  
Sbjct: 172 LNLRGNNLA--SKNCAELAKFLASIPASVTSLDLSANLL 208

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTS 176
           T L L  N++  +               +  ++LS N +     D   Q L +    +TS
Sbjct: 25  TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84

Query: 177 LTLNNNNLT-----YLPDGVFAELFRLRTLRISENSF 208
           L L+ N L+      L   + A  F +  L +  N F
Sbjct: 85  LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 19/99 (19%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLK----SLTS 176
           T L L  N ++                 +  +DL  N  S  +   F Q       S+TS
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 177 LTLNNNNLTYLPDGV--FAELFR-----LRTLRISENSF 208
           L L  N+L           ++       + +L +  N+ 
Sbjct: 143 LNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 23/146 (15%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSL 177
           T L L  N +        A         +  ++L  N +   ++         LK L ++
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 178 TLNNNNLTYLPDGVFAELFR-------LRTLRISENSFICDCHLSWLHRWLKRYP----R 226
            L+ + +  +       L         +  +  +    I   H   +   ++        
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSHSIPISNLIRELSGKADV 317

Query: 227 LGLYTKC--FAPSHIKGQNILDIPEH 250
             L  +C  FA  H      L+IP+ 
Sbjct: 318 PSLLNQCLIFAQKHQTNIEDLNIPDE 343

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 18/98 (18%)

Query: 127 TELRLEQNDITELPPKAFA-----NYKRLRRIDLSKNQISKVAVDAF-QGLKS----LTS 176
             L L  N++        A         +  +DLS N +   +         S    + S
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229

Query: 177 LTLNNNNLTYLPDGV--FAELFR----LRTLRISENSF 208
           L L  N L      +     L      L+T+ +  +  
Sbjct: 230 LNLCLNCLH--GPSLENLKLLKDSLKHLQTVYLDYDIV 265

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQ----ISKVAVDAFQGLKSLTSLTLNNN 182
             + L +N +       F + K  ++I L+KN     + KV        K+L  L L NN
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG-----LSKNLNGLDLRNN 254

Query: 183 NLT-YLPDGVFAELFRLRTLRISENSF 208
            +   LP G   +L  L +L +S N+ 
Sbjct: 255 RIYGTLPQG-LTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT- 185
             L +   +++   P   +  K L  +D S N +S     +   L +L  +T + N ++ 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 186 YLPDGVFAELFRLRT-LRISENSF-------ICDCHLSWL 217
            +PD       +L T + IS N           + +L+++
Sbjct: 164 AIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFV 202

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
             +  T + + +N +T   P  FAN   L  +DLS+N +   A   F   K+   + L  
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 182 NNLT-YLPDGVFAELFRLRTLRISENSF 208
           N+L   L          L  L +  N  
Sbjct: 231 NSLAFDLGK--VGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 141 PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLR 199
           P A A   +L  + ++   +S    D    +K+L +L  + N L+  LP    + L  L 
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLV 152

Query: 200 TLRISENSF 208
            +    N  
Sbjct: 153 GITFDGNRI 161

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 17/96 (17%)

Query: 127 TELRL-EQNDITELPPKAFANY----KRLRRIDLSKNQISKVAVDAF-QGLK---SLTSL 177
            E+ L    +I     KA A        +++  +   + +     A  + LK   +L SL
Sbjct: 39  EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL 98

Query: 178 TLNNNNLTYLPDGV--FAELFR----LRTLRISENS 207
            + +N ++    G+    E  +    L  LRI   S
Sbjct: 99  NVESNFIS--GSGILALVEALQSNTSLIELRIDNQS 132

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 14/95 (14%)

Query: 127 TELRLEQNDITELPPKAFANY----KRLRRIDLSKNQISKVAVDAF-QGLK---SLTSLT 178
            +  +      +    A A        L+ +++  N IS   + A  + L+   SL  L 
Sbjct: 68  KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELR 127

Query: 179 LNNNNLTYLPDGV--FAELFR----LRTLRISENS 207
           ++N +     +     A +      L         
Sbjct: 128 IDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 5e-04
 Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 127 TELRLEQNDITELPPKAFANY---KRLRRIDLSKNQISKVAVDAF----QGLKSLTSLTL 179
             L +   +   +  + F       +L  +D+S   ++             +K L  + +
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 180 NNNNLT 185
             N L+
Sbjct: 315 KYNYLS 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.75
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.66
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.66
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.54
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.54
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.45
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.37
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.37
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.2
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.19
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.92
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.91
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.83
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.34
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	90.62

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=247.05  Aligned_cols=234  Identities=20%  Similarity=0.233  Sum_probs=165.2

Q ss_pred             ceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  182 (405)
                      +.+++++|.++.+|...   .++|+.|++++|.++.+.+..|.++++|+.|++++|.+..+.+..|.++++|+.|++++|
T Consensus        83 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           83 RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            78888888888888643   267888888888888888778888888888888888888888888888888888888888


Q ss_pred             cCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCc-ccccCCCcccccCccccc
Q psy12210        183 NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQN-ILDIPEHEFKCSGSSMET  261 (405)
Q Consensus       183 ~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~l~~~~~~~~~~~~~~  261 (405)
                      .++.+++..|..+++|+.|++++|.+...            ....+.....+....+.+.. +..++...+         
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------  221 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAI------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCL---------  221 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEE------------CTTCSCSCTTCCEEEEECCTTCCEECTTTT---------
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEe------------ChhhcccCcccceeeCCCCccccccCcccc---------
Confidence            88888888888888888888888875410            00001001111111111100 000111000         


Q ss_pred             cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC---CCCCceEEEEE-ecceeee
Q psy12210        262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL---LPEATTELTYM-VSIDRVD  337 (405)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~---~~~~l~~L~l~-n~i~~i~  337 (405)
                                                   .        ..+|+.|++++|.++.+|..   ..++|+.|+++ |.+..++
T Consensus       222 -----------------------------~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          222 -----------------------------Y--------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             -----------------------------T--------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             -----------------------------c--------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence                                         0        01577888888888877732   24677888888 8888777


Q ss_pred             ccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        338 KVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       338 ~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                              +..|.++++ +.|+|++|+|+.+.+..|.++++|+.|+|++|+|+++++..|..+++|++|
T Consensus       265 --------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  325 (477)
T 2id5_A          265 --------GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL  325 (477)
T ss_dssp             --------TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred             --------hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence                    667777888 888888888888877778888888888888888888887777777777653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=237.63  Aligned_cols=247  Identities=25%  Similarity=0.380  Sum_probs=200.6

Q ss_pred             CCCCCCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCC
Q psy12210         94 EPSCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL  171 (405)
Q Consensus        94 ~~~~p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l  171 (405)
                      ...||..|.|..  ..++|++++++++|..++++++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++
T Consensus        32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l  111 (440)
T 3zyj_A           32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL  111 (440)
T ss_dssp             -CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred             cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence            367999999974  799999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC-CcccccCCC
Q psy12210        172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG-QNILDIPEH  250 (405)
Q Consensus       172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~l~~~  250 (405)
                      ++|++|++++|.++.++++.|..+++|+.|++++|.+...            ....+.....+..+.+.+ ..+..++  
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~------------~~~~~~~l~~L~~L~l~~~~~l~~i~--  177 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI------------PSYAFNRIPSLRRLDLGELKRLSYIS--  177 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE------------CTTTTTTCTTCCEEECCCCTTCCEEC--
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc------------CHHHhhhCcccCEeCCCCCCCcceeC--
Confidence            9999999999999999999999999999999999986510            011111111111122221 1111111  


Q ss_pred             cccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC-CCCceEEEE
Q psy12210        251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-PEATTELTY  329 (405)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~-~~~l~~L~l  329 (405)
                                                          ...+....       +|++|++++|.++.+|... .++|+.|++
T Consensus       178 ------------------------------------~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  214 (440)
T 3zyj_A          178 ------------------------------------EGAFEGLS-------NLRYLNLAMCNLREIPNLTPLIKLDELDL  214 (440)
T ss_dssp             ------------------------------------TTTTTTCS-------SCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred             ------------------------------------cchhhccc-------ccCeecCCCCcCccccccCCCcccCEEEC
Confidence                                                11222222       6899999999999887533 368999999


Q ss_pred             E-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        330 M-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      + |++..++        +..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|..+++|++|
T Consensus       215 s~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          215 SGNHLSAIR--------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             TTSCCCEEC--------TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEE
T ss_pred             CCCccCccC--------hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEE
Confidence            9 9999988        788999999 999999999999999889999999999999999999998888888887753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.4e-28  Score=237.60  Aligned_cols=247  Identities=23%  Similarity=0.377  Sum_probs=201.5

Q ss_pred             CCCCCCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCC
Q psy12210         94 EPSCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL  171 (405)
Q Consensus        94 ~~~~p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l  171 (405)
                      ...||..|.|..  ..++|++++++++|..++++++.|++++|.|+.+++..|.++++|+.|++++|.++.+.+..|.++
T Consensus        43 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l  122 (452)
T 3zyi_A           43 PQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL  122 (452)
T ss_dssp             -CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence            468999999974  799999999999999999999999999999999999899999999999999999999999999999


Q ss_pred             CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC-CcccccCCC
Q psy12210        172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG-QNILDIPEH  250 (405)
Q Consensus       172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~l~~~  250 (405)
                      ++|++|++++|.++.++++.|..+++|+.|++++|.+...            ....+.....+..+.+.+ ..+..++. 
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~------------~~~~~~~l~~L~~L~l~~~~~l~~i~~-  189 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI------------PSYAFNRVPSLMRLDLGELKKLEYISE-  189 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE------------CTTTTTTCTTCCEEECCCCTTCCEECT-
T ss_pred             ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee------------CHhHHhcCCcccEEeCCCCCCccccCh-
Confidence            9999999999999999999999999999999999986510            001111111111122221 11111221 


Q ss_pred             cccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC-CCCceEEEE
Q psy12210        251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-PEATTELTY  329 (405)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~-~~~l~~L~l  329 (405)
                                                           ..+....       +|++|++++|+++.+|... .++|+.|++
T Consensus       190 -------------------------------------~~~~~l~-------~L~~L~L~~n~l~~~~~~~~l~~L~~L~L  225 (452)
T 3zyi_A          190 -------------------------------------GAFEGLF-------NLKYLNLGMCNIKDMPNLTPLVGLEELEM  225 (452)
T ss_dssp             -------------------------------------TTTTTCT-------TCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred             -------------------------------------hhccCCC-------CCCEEECCCCcccccccccccccccEEEC
Confidence                                                 1222222       6999999999999887433 478999999


Q ss_pred             E-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        330 M-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      + |.+.+++        +..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|..+++|++|
T Consensus       226 s~N~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          226 SGNHFPEIR--------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             TTSCCSEEC--------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred             cCCcCcccC--------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence            9 9999998        788999999 999999999999999889999999999999999999998888888887753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.6e-28  Score=221.10  Aligned_cols=114  Identities=30%  Similarity=0.565  Sum_probs=107.5

Q ss_pred             CCCCCccccC---ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC
Q psy12210         96 SCPHPCRCAD---GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK  172 (405)
Q Consensus        96 ~~p~~~~c~~---~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~  172 (405)
                      .||..|.|..   +.++|++++++.+|..++++++.|++++|.++.+++..|.++++|+.|++++|.++.+.+..|.+++
T Consensus         1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   80 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (285)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc
Confidence            4999999975   6799999999999999999999999999999999988899999999999999999999889999999


Q ss_pred             CCCEEEccCCc-CcccChhhhhcccCCcEEEeecCccc
Q psy12210        173 SLTSLTLNNNN-LTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       173 ~L~~L~l~~n~-l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      +|++|++++|. +..+++..|..+++|+.|++++|.+.
T Consensus        81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~  118 (285)
T 1ozn_A           81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (285)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC
Confidence            99999999997 99998888999999999999999854

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=5.6e-28  Score=235.13  Aligned_cols=344  Identities=16%  Similarity=0.168  Sum_probs=224.7

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|+++++|++|++++|.+.+..+.           .........+.+++++|.+..+....|...
T Consensus        34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~-----------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  102 (455)
T 3v47_A           34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN-----------NTFRGLSSLIILKLDYNQFLQLETGAFNGL  102 (455)
T ss_dssp             EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECT-----------TTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred             EEEecCCccCcCChhHhccCccccEEECcCCcccceECc-----------ccccccccCCEEeCCCCccCccChhhccCc
Confidence            588999999999888899999999999999987532211           111112234556777777777655444322


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccc-cCCC--C--CCCccEEEccCCCCCCCCccc-ccCCCCCcEEec
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK-VPIL--L--PEATTELRLEQNDITELPPKA-FANYKRLRRIDL  155 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~-lp~~--~--~~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~l  155 (405)
                      .                     .++++++++|.++. +|..  +  .++|++|++++|.++.+.+.. +.++++|++|++
T Consensus       103 ~---------------------~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A          103 A---------------------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             T---------------------TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             c---------------------cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            1                     13888888888875 2322  2  357888888888888886654 788888888888


Q ss_pred             CCCcceeecccccCCC--CCCCEEEccCCcCcccChhhh--------hcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210        156 SKNQISKVAVDAFQGL--KSLTSLTLNNNNLTYLPDGVF--------AELFRLRTLRISENSFICDCHLSWLHRWLKRYP  225 (405)
Q Consensus       156 s~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~l~~~~f--------~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~  225 (405)
                      ++|.++.+.+..+..+  .+|+.|++++|.+..+++..+        ..+++|+.|++++|.+.... ...+........
T Consensus       162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~~~~  240 (455)
T 3v47_A          162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM-AKRFFDAIAGTK  240 (455)
T ss_dssp             TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH-HHHHHHHTTTCC
T ss_pred             CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc-hhhhhccccccc
Confidence            8888888877767665  678888888888887775432        24578999999999875210 011111110011


Q ss_pred             CCCCcccc--CCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q psy12210        226 RLGLYTKC--FAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCAD  303 (405)
Q Consensus       226 ~~~~~~~~--~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l  303 (405)
                      ........  .....+....+.......+...            .........++.+.+.......+....       +|
T Consensus       241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L  301 (455)
T 3v47_A          241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGL------------EASGVKTCDLSKSKIFALLKSVFSHFT-------DL  301 (455)
T ss_dssp             EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGG------------TTSCCCEEECCSSCCCEECTTTTTTCT-------TC
T ss_pred             eeeEeeccccccccccchhhhccCcccccccc------------cccCceEEEecCccccccchhhcccCC-------CC
Confidence            00000000  0000111111111111111110            011222333445555554444444443       69


Q ss_pred             ceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccC
Q psy12210        304 GIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRL  378 (405)
Q Consensus       304 ~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L  378 (405)
                      ++|++++|.++.++...   .+.|++|+++ |.+.+++        +..|+++++ +.|+|++|+|+.+.+..|.++++|
T Consensus       302 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID--------SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL  373 (455)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------hhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence            99999999998886543   3688999999 9998887        778888999 999999999999988889999999


Q ss_pred             ceeecccCCCcccChhhcCCCccccCC
Q psy12210        379 RRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       379 ~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +.|+|++|+++++++..|+++++|++|
T Consensus       374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          374 KELALDTNQLKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cEEECCCCccccCCHhHhccCCcccEE
Confidence            999999999999998888888888754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.9e-28  Score=238.70  Aligned_cols=283  Identities=22%  Similarity=0.288  Sum_probs=214.2

Q ss_pred             CCCCCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC
Q psy12210         95 PSCPHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK  172 (405)
Q Consensus        95 ~~~p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~  172 (405)
                      ..||..|.|..  +.++|++++++.+|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.+++
T Consensus         1 ~~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~   80 (477)
T 2id5_A            1 TGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF   80 (477)
T ss_dssp             CCCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CcccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc
Confidence            36999999975  7999999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcc
Q psy12210        173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF  252 (405)
Q Consensus       173 ~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~  252 (405)
                      +|++|++++|.++.++.+.|..+++|+.|++++|.+...            .+..+.....+..+.+.++.+..+....|
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  148 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL------------LDYMFQDLYNLKSLEVGDNDLVYISHRAF  148 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE------------CTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC------------ChhHccccccCCEEECCCCccceeChhhc
Confidence            999999999999999999999999999999999987521            11122223334444455555555444433


Q ss_pred             cccCccccccc-----------cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCC-CCcCCCCC
Q psy12210        253 KCSGSSMETRS-----------KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG-LNKVPILL  320 (405)
Q Consensus       253 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-l~~~p~~~  320 (405)
                      ...... ..+.           ..+..........++.+.+.......+....       +|+.|++++|. +..+|...
T Consensus       149 ~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~  220 (477)
T 2id5_A          149 SGLNSL-EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY-------RLKVLEISHWPYLDTMTPNC  220 (477)
T ss_dssp             TTCTTC-CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT-------TCCEEEEECCTTCCEECTTT
T ss_pred             cCCCCC-CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc-------ccceeeCCCCccccccCccc
Confidence            221100 0000           0011111222223333444444444443333       67788887764 34445444


Q ss_pred             C--CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhc
Q psy12210        321 P--EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF  396 (405)
Q Consensus       321 ~--~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f  396 (405)
                      +  .+++.|+++ |+++.++        ...|..+++ +.|+|++|+|+.+++..|.++++|+.|+|++|+++++.+.+|
T Consensus       221 ~~~~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          221 LYGLNLTSLSITHCNLTAVP--------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             TTTCCCSEEEEESSCCCSCC--------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             ccCccccEEECcCCcccccC--------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence            3  478899999 9998888        677899999 999999999999999999999999999999999999999899


Q ss_pred             CCCccccCC
Q psy12210        397 ANYKRLRRM  405 (405)
Q Consensus       397 ~~l~~L~~L  405 (405)
                      .++++|++|
T Consensus       293 ~~l~~L~~L  301 (477)
T 2id5_A          293 RGLNYLRVL  301 (477)
T ss_dssp             TTCTTCCEE
T ss_pred             cCcccCCEE
Confidence            999988764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=3.7e-27  Score=237.60  Aligned_cols=155  Identities=11%  Similarity=0.061  Sum_probs=87.9

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|+++++|++|++++|.+++..            +.........+.+++++|.+..+....|...
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  104 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH------------EDTFQSQHRLDTLVLTANPLIFMAETALSGP  104 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred             EEEccCCccCcCChhHhccCccceEEECCCCccceeC------------hhhccCccccCeeeCCCCcccccChhhhccc
Confidence            5899999999999989999999999999999987422            2222223335566777777777665554332


Q ss_pred             -CCCCCCCCCCCCCCCCC-CCccc-cCceEEcCCCCccccC--CCC-CCCccEEEccCCCCCCCCcccccCCCCCc--EE
Q psy12210         82 -GPVEKPTGECAAEPSCP-HPCRC-ADGIVDCREKGLNKVP--ILL-PEATTELRLEQNDITELPPKAFANYKRLR--RI  153 (405)
Q Consensus        82 -~~~~~~~~~~~~~~~~p-~~~~c-~~~~l~~~~n~l~~lp--~~~-~~~L~~L~L~~n~i~~l~~~~~~~l~~L~--~L  153 (405)
                       ......+..+......| ....+ .++.+++++|.++.++  ... .+++++|++++|.++.+++..|+.+++|+  .|
T Consensus       105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L  184 (606)
T 3t6q_A          105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL  184 (606)
T ss_dssp             TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred             ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence             22222222222211111 11122 1356666666655542  211 24556666666666655555555566665  55


Q ss_pred             ecCCCcceeeccccc
Q psy12210        154 DLSKNQISKVAVDAF  168 (405)
Q Consensus       154 ~ls~n~l~~~~~~~~  168 (405)
                      ++++|.+..+++..|
T Consensus       185 ~l~~n~l~~~~~~~~  199 (606)
T 3t6q_A          185 NLNGNDIAGIEPGAF  199 (606)
T ss_dssp             ECTTCCCCEECTTTT
T ss_pred             ecCCCccCccChhHh
Confidence            666666555554433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.8e-27  Score=239.97  Aligned_cols=365  Identities=15%  Similarity=0.151  Sum_probs=191.5

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|+|++++..++..+++|++|++++|.+++..+..     +........     ..+++++|.+..++...|...
T Consensus       133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~-----l~L~l~~n~l~~~~~~~~~~~  202 (606)
T 3t6q_A          133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-----MSSLQQATN-----LSLNLNGNDIAGIEPGAFDSA  202 (606)
T ss_dssp             EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-----HHTTTTCCS-----EEEECTTCCCCEECTTTTTTC
T ss_pred             EEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-----hhhhcccce-----eEEecCCCccCccChhHhhhc
Confidence            5889999999876555667899999999999887533311     111111110     023455555555444433221


Q ss_pred             CCCCCCCCC--------------------------CCCCCCCC----CCccccCceEEcCCCCccccCCCC---CCCccE
Q psy12210         82 GPVEKPTGE--------------------------CAAEPSCP----HPCRCADGIVDCREKGLNKVPILL---PEATTE  128 (405)
Q Consensus        82 ~~~~~~~~~--------------------------~~~~~~~p----~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~  128 (405)
                      ......+..                          .......+    ..+....+.+++++|.++.+|...   .++++.
T Consensus       203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  282 (606)
T 3t6q_A          203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE  282 (606)
T ss_dssp             EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred             cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence            100000000                          00000000    011112355566666655555432   135556


Q ss_pred             EEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc-ccChhhhhcccCCcEEEeecCc
Q psy12210        129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       129 L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      |++++|.++.++.. +.++++|++|++++|.++.+.+..+..+++|++|++++|.+. .++...|..+++|+.|++++|.
T Consensus       283 L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  361 (606)
T 3t6q_A          283 LDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD  361 (606)
T ss_dssp             EECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC
T ss_pred             EeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc
Confidence            66666666555542 555556666666666655555555555555666666555544 4444445555556666555555


Q ss_pred             cccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccc------------cceecccccCCC
Q psy12210        208 FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS------------KIYREECSTDFH  275 (405)
Q Consensus       208 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~  275 (405)
                      +....          ..+........+....+.++.+..+....+...+. +..+.            ..+.........
T Consensus       362 l~~~~----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          362 IETSD----------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             CCEEE----------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             ccccc----------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            43110          00001111112222223333333222222211100 00000            001112223333


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC--CCC----CCCCceEEEEE-ecceeeeccchhcccccc
Q psy12210        276 PYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PIL----LPEATTELTYM-VSIDRVDKVLLYSYISNN  348 (405)
Q Consensus       276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~--p~~----~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~  348 (405)
                      .++.+.+.......+....       +|++|++++|.++..  +..    ..+.++.|+++ |++.+++        +..
T Consensus       431 ~l~~n~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~  495 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLP-------ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID--------QHA  495 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCT-------TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC--------TTT
T ss_pred             ECCCCccCCcCHHHHhCCC-------CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC--------hhh
Confidence            4455555554444444433       688888888887652  211    13678888888 8888877        677


Q ss_pred             ccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        349 FKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       349 ~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      |.++++ +.|+|++|+++.+++..|.++++| .|+|++|+++++++..|..+++|++
T Consensus       496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~  551 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT  551 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred             hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence            888888 888888888888888888888888 8888888888888777776666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.4e-27  Score=220.95  Aligned_cols=257  Identities=25%  Similarity=0.333  Sum_probs=196.0

Q ss_pred             CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210         95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL  174 (405)
Q Consensus        95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  174 (405)
                      ..||..|.|..+.++|++++++.+|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++++|
T Consensus        23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            56999999999999999999999999999999999999999999999889999999999999999999988999999999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccc--cCCCcc
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD--IPEHEF  252 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--l~~~~~  252 (405)
                      ++|++++|.++.++...+   ++|+.|++++|.+....     ...       +.....+....+.++.+..  +.... 
T Consensus       103 ~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~-----~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~-  166 (330)
T 1xku_A          103 ERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVR-----KSV-------FNGLNQMIVVELGTNPLKSSGIENGA-  166 (330)
T ss_dssp             CEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBC-----HHH-------HTTCTTCCEEECCSSCCCGGGBCTTG-
T ss_pred             CEEECCCCcCCccChhhc---ccccEEECCCCcccccC-----HhH-------hcCCccccEEECCCCcCCccCcChhh-
Confidence            999999999999987653   78999999999865210     000       0111122223333333322  11111 


Q ss_pred             cccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEE
Q psy12210        253 KCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTY  329 (405)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l  329 (405)
                                   +..........++.+.+..++....          .++++|++++|.++.++...   .++++.|++
T Consensus       167 -------------~~~l~~L~~L~l~~n~l~~l~~~~~----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          167 -------------FQGMKKLSYIRIADTNITTIPQGLP----------PSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             -------------GGGCTTCCEEECCSSCCCSCCSSCC----------TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             -------------ccCCCCcCEEECCCCccccCCcccc----------ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence                         1222233334455555554443221          26889999999988875432   368889999


Q ss_pred             E-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC
Q psy12210        330 M-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY  399 (405)
Q Consensus       330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l  399 (405)
                      + |.+.+++        +..|..+++ +.|+|++|+|+.++.. +..+++|+.|+|++|+|++++...|...
T Consensus       224 s~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          224 SFNSISAVD--------NGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             CSSCCCEEC--------TTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             CCCcCceeC--------hhhccCCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccChhhcCCc
Confidence            9 9998888        677888889 9999999999988764 7788999999999999999988877543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=2.1e-26  Score=214.80  Aligned_cols=274  Identities=22%  Similarity=0.233  Sum_probs=200.6

Q ss_pred             CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210         95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL  174 (405)
Q Consensus        95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  174 (405)
                      ..||..|.|..+.++|++++++.+|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.++++|
T Consensus        25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            57999999999999999999999999999999999999999999998889999999999999999999988999999999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-----chHHHHH---------HhhcCCCCCccccCCCCCCC
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-----LSWLHRW---------LKRYPRLGLYTKCFAPSHIK  240 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-----l~~~~~~---------~~~~~~~~~~~~~~~~~~l~  240 (405)
                      ++|++++|.++.++...+   ++|+.|++++|.+.....     +..+...         ....+..+... .+....+.
T Consensus       105 ~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            999999999998887553   678888888877652100     0000000         00000000000 12222223


Q ss_pred             CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC
Q psy12210        241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL  320 (405)
Q Consensus       241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~  320 (405)
                      ++.+..++...+                 .......++.+.+.......+....       +|++|++++|.++.++...
T Consensus       181 ~n~l~~l~~~~~-----------------~~L~~L~l~~n~i~~~~~~~l~~l~-------~L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          181 EAKLTGIPKDLP-----------------ETLNELHLDHNKIQAIELEDLLRYS-------KLYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             SSBCSSCCSSSC-----------------SSCSCCBCCSSCCCCCCTTSSTTCT-------TCSCCBCCSSCCCCCCTTG
T ss_pred             CCCCCccCcccc-----------------CCCCEEECCCCcCCccCHHHhcCCC-------CCCEEECCCCcCCcCChhH
Confidence            333332222111                 1233344556666666555554444       7899999999999887543


Q ss_pred             ---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC------ccCceeecccCCCc
Q psy12210        321 ---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY------KRLRRIRLEQNDIT  389 (405)
Q Consensus       321 ---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l------~~L~~L~L~~N~l~  389 (405)
                         .++++.|+++ |++..++         ..+..+++ +.|++++|+|+.+++..|...      ++|+.|++++|.+.
T Consensus       237 ~~~l~~L~~L~L~~N~l~~lp---------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          237 LSFLPTLRELHLDNNKLSRVP---------AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCC---------TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             hhCCCCCCEEECCCCcCeecC---------hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence               4688999999 9999887         56888889 999999999999988877653      67889999999987


Q ss_pred             --ccChhhcCCCccccCC
Q psy12210        390 --ELPPKAFANYKRLRRM  405 (405)
Q Consensus       390 --~i~~~~f~~l~~L~~L  405 (405)
                        ++.+.+|..+++|+.+
T Consensus       308 ~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          308 YWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             GGGSCGGGGTTBCCSTTE
T ss_pred             ccccCcccccccchhhhh
Confidence              7778888888888753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.6e-27  Score=246.32  Aligned_cols=347  Identities=16%  Similarity=0.126  Sum_probs=187.7

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCccc-ccCCCcccc
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNIL-DIPEHEFKC   80 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~l~~~~~~~   80 (405)
                      .|+|++|++++..+..|+++++|++|++++|.++|..+...+.    ..       ...+.+++++|.+. .++......
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~----~l-------~~L~~L~Ls~n~l~~~~p~~l~~l  366 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL----KM-------RGLKVLDLSFNEFSGELPESLTNL  366 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT----TC-------TTCCEEECCSSEEEECCCTTHHHH
T ss_pred             EEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh----cC-------CCCCEEeCcCCccCccccHHHHhh
Confidence            3556666666555555666666666666666665433322111    11       11233455555555 333332222


Q ss_pred             C-CCCCCCCCCCCCCC-CCCCCcc--c-cCceEEcCCCCcc-ccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcE
Q psy12210         81 S-GPVEKPTGECAAEP-SCPHPCR--C-ADGIVDCREKGLN-KVPILL--PEATTELRLEQNDITELPPKAFANYKRLRR  152 (405)
Q Consensus        81 ~-~~~~~~~~~~~~~~-~~p~~~~--c-~~~~l~~~~n~l~-~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~  152 (405)
                      . ......+..+.... ..+..+.  + .++.+++++|.++ .+|..+  .++++.|++++|.+++..+..+.++++|+.
T Consensus       367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  446 (768)
T 3rgz_A          367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD  446 (768)
T ss_dssp             TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred             hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE
Confidence            1 22222222222111 1111221  1 2466677776665 344433  256677777777776655556677777777


Q ss_pred             EecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccc
Q psy12210        153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTK  232 (405)
Q Consensus       153 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~  232 (405)
                      |++++|.+.+..|..+..+++|++|++++|.++...+..|..+++|+.|++++|.+..            ..+.......
T Consensus       447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~------------~~p~~~~~l~  514 (768)
T 3rgz_A          447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG------------EIPKWIGRLE  514 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS------------CCCGGGGGCT
T ss_pred             EECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC------------cCChHHhcCC
Confidence            7777777766666666677777777777777765555566667777777777776541            1111112222


Q ss_pred             cCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCC-------------------
Q psy12210        233 CFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEP-------------------  293 (405)
Q Consensus       233 ~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------  293 (405)
                      .+....+.++.+....+..+..              ........++.+.+...-+..+...                   
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~--------------l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~  580 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGD--------------CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN  580 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGG--------------CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEEC
T ss_pred             CCCEEECCCCcccCcCCHHHcC--------------CCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccc
Confidence            3344445555554333322221              1222233334443331111000000                   


Q ss_pred             --------------------------------------------CCCCCccccCceeecCCCCCCc-CCCCC--CCCceE
Q psy12210        294 --------------------------------------------SCPHPCRCADGIVDCREKGLNK-VPILL--PEATTE  326 (405)
Q Consensus       294 --------------------------------------------~~~~~~~~~l~~l~l~~n~l~~-~p~~~--~~~l~~  326 (405)
                                                                  ........+++++|+++|+++. +|..+  .+.++.
T Consensus       581 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  660 (768)
T 3rgz_A          581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI  660 (768)
T ss_dssp             CSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred             ccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence                                                        0000112357788888888874 45443  367888


Q ss_pred             EEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccCh
Q psy12210        327 LTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       327 L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                      |+++ |++++..        +..|+++++ +.|||++|+++...|..|+++++|+.|||++|++++..|
T Consensus       661 L~Ls~N~l~g~i--------p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          661 LNLGHNDISGSI--------PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             EECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             EeCcCCccCCCC--------ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            8888 8887554        577888888 888888888887777778888888888888888776444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.1e-27  Score=217.02  Aligned_cols=242  Identities=20%  Similarity=0.316  Sum_probs=166.8

Q ss_pred             CCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec--ccccCCCCCC
Q psy12210         97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA--VDAFQGLKSL  174 (405)
Q Consensus        97 ~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L  174 (405)
                      ||..|.|..+.++|++++++++|..+++++++|++++|.++.+++..|.++++|+.|++++|.++.+.  +..+.++++|
T Consensus         1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L   80 (306)
T 2z66_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL   80 (306)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred             CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence            89999999999999999999999999999999999999999999988999999999999999998664  4567789999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccc
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC  254 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~  254 (405)
                      ++|++++|.+..++.. |..+++|+.|++++|.+.....           .........+....+.++.+.......+  
T Consensus        81 ~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~--  146 (306)
T 2z66_A           81 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE-----------FSVFLSLRNLIYLDISHTHTRVAFNGIF--  146 (306)
T ss_dssp             CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTT-----------TTTTTTCTTCCEEECTTSCCEECSTTTT--
T ss_pred             CEEECCCCccccChhh-cCCCCCCCEEECCCCccccccc-----------chhhhhccCCCEEECCCCcCCccchhhc--
Confidence            9999999999998864 7889999999999998762100           0011112222223333333333222222  


Q ss_pred             cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc--CCCCC--CCCceEEEEE
Q psy12210        255 SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK--VPILL--PEATTELTYM  330 (405)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~--~p~~~--~~~l~~L~l~  330 (405)
                                                          ....       +|++|++++|.++.  +|..+  .+++++|+++
T Consensus       147 ------------------------------------~~l~-------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          147 ------------------------------------NGLS-------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             ------------------------------------TTCT-------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             ------------------------------------ccCc-------CCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence                                                1111       46666666666654  33332  2456666666


Q ss_pred             -ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC-cccc
Q psy12210        331 -VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY-KRLR  403 (405)
Q Consensus       331 -n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l-~~L~  403 (405)
                       |++.+++        +..|..+++ +.|+|++|+++.+++..|..+++|+.|+|++|+++++.+..+..+ ++|+
T Consensus       184 ~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  251 (306)
T 2z66_A          184 QCQLEQLS--------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  251 (306)
T ss_dssp             TSCCCEEC--------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred             CCCcCCcC--------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence             6666665        455666666 666666666666665556666666666666666666555555554 2444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=5.7e-27  Score=233.45  Aligned_cols=349  Identities=12%  Similarity=0.148  Sum_probs=204.7

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|.++++|++|++++|++++..+            .........+.+++++|.+..++...|...
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l   97 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG------------DAFYSLGSLEHLDLSDNHLSSLSSSWFGPL   97 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh------------hhccccccCCEEECCCCccCccCHHHhccC
Confidence            58889999998888888999999999999998874221            111222335567778888777766544322


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcccc--CCCC--CCCccEEEccCCC-CCCCCcccccCCCCCcEEecC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PILL--PEATTELRLEQND-ITELPPKAFANYKRLRRIDLS  156 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~l--p~~~--~~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~ls  156 (405)
                      ..                     ++++++++|.++.+  |..+  .+++++|++++|. +..+++..|.++++|++|+++
T Consensus        98 ~~---------------------L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~  156 (549)
T 2z81_A           98 SS---------------------LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK  156 (549)
T ss_dssp             TT---------------------CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CC---------------------CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence            11                     26666666666643  3323  2466666666666 555555556666666666666


Q ss_pred             CCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcccccc------------------------
Q psy12210        157 KNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC------------------------  212 (405)
Q Consensus       157 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~------------------------  212 (405)
                      +|.++...+..+..+++|+.|+++.|.+..++...+..+++|+.|++++|.+....                        
T Consensus       157 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          157 ALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             ETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            66666666566665555555555555555554444444555555555555433210                        


Q ss_pred             -------------------------C---------------------------------------chHHHHHHhh-----
Q psy12210        213 -------------------------H---------------------------------------LSWLHRWLKR-----  223 (405)
Q Consensus       213 -------------------------~---------------------------------------l~~~~~~~~~-----  223 (405)
                                               .                                       +..+......     
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence                                     0                                       0000000000     


Q ss_pred             ---cCC--CC----CccccCCCCCCCCCcccccCC------CcccccC------cccccc---ccceecccccCCCCCCC
Q psy12210        224 ---YPR--LG----LYTKCFAPSHIKGQNILDIPE------HEFKCSG------SSMETR---SKIYREECSTDFHPYNS  279 (405)
Q Consensus       224 ---~~~--~~----~~~~~~~~~~l~~~~l~~l~~------~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~  279 (405)
                         ...  ..    .....+....+.++.+.....      ..+....      ......   ...+..........++.
T Consensus       317 l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~  396 (549)
T 2z81_A          317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR  396 (549)
T ss_dssp             EESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT
T ss_pred             eccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCC
Confidence               000  00    011222333344433332110      0000000      000000   01123334444555666


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210        280 CPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR  357 (405)
Q Consensus       280 ~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L  357 (405)
                      +.++.++... ..       ..+|++|++++|.++.+|..+++.+++|+++ |++++++            ..+++ +.|
T Consensus       397 N~l~~lp~~~-~~-------~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~------------~~l~~L~~L  456 (549)
T 2z81_A          397 NTFHPMPDSC-QW-------PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS------------LFLPRLQEL  456 (549)
T ss_dssp             CCCCCCCSCC-CC-------CTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC------------CCCTTCCEE
T ss_pred             CCCccCChhh-cc-------cccccEEECCCCCcccccchhcCCceEEECCCCChhhhc------------ccCChhcEE
Confidence            6666544321 11       2368899999999988888888889999999 8887654            46788 999


Q ss_pred             EecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       358 ~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +|++|+|+.++.  ...+++|+.|+|++|+++++++..|.++++|++|
T Consensus       457 ~Ls~N~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  502 (549)
T 2z81_A          457 YISRNKLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI  502 (549)
T ss_dssp             ECCSSCCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred             ECCCCccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence            999999998886  3568999999999999999998888888887754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=2.5e-26  Score=214.07  Aligned_cols=274  Identities=17%  Similarity=0.192  Sum_probs=194.4

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .++++++.++.+|...   .++++.|++++|.+++..+            .........+.++++++.+..+....|...
T Consensus        35 ~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (330)
T 1xku_A           35 VVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKD------------GDFKNLKNLHTLILINNKISKISPGAFAPL   99 (330)
T ss_dssp             EEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCT------------TTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             EEEecCCCccccCccC---CCCCeEEECCCCcCCEeCh------------hhhccCCCCCEEECCCCcCCeeCHHHhcCC
Confidence            3567777777776532   3567777777777763111            011111223445566666666544443222


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                      .                     .++++++++|.++++|..++++++.|++++|.++.+++..|.++++|+.|++++|.+.
T Consensus       100 ~---------------------~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          100 V---------------------KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             T---------------------TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             C---------------------CCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            1                     1388899999998888888888999999999999888888888999999999999886


Q ss_pred             e--ecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC
Q psy12210        162 K--VAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI  239 (405)
Q Consensus       162 ~--~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  239 (405)
                      .  +.+..|.++++|++|++++|.++.++...+   ++|+.|++++|.+.                              
T Consensus       159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~------------------------------  205 (330)
T 1xku_A          159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT------------------------------  205 (330)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCC------------------------------
T ss_pred             ccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCC------------------------------
Confidence            4  556778888899999999999888886543   78888988888743                              


Q ss_pred             CCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC
Q psy12210        240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL  319 (405)
Q Consensus       240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~  319 (405)
                            .+....+...                                             .+|+.|++++|.++.++..
T Consensus       206 ------~~~~~~~~~l---------------------------------------------~~L~~L~Ls~n~l~~~~~~  234 (330)
T 1xku_A          206 ------KVDAASLKGL---------------------------------------------NNLAKLGLSFNSISAVDNG  234 (330)
T ss_dssp             ------EECTGGGTTC---------------------------------------------TTCCEEECCSSCCCEECTT
T ss_pred             ------ccCHHHhcCC---------------------------------------------CCCCEEECCCCcCceeChh
Confidence                  2222222111                                             1588888888888887654


Q ss_pred             C---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC------ccCceeecccCCC
Q psy12210        320 L---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY------KRLRRIRLEQNDI  388 (405)
Q Consensus       320 ~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l------~~L~~L~L~~N~l  388 (405)
                      .   .+++++|+++ |++..++         ..+..+++ +.|++++|+|+.+++..|...      +.|+.|++++|.+
T Consensus       235 ~~~~l~~L~~L~L~~N~l~~lp---------~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          235 SLANTPHLRELHLNNNKLVKVP---------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             TGGGSTTCCEEECCSSCCSSCC---------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             hccCCCCCCEEECCCCcCccCC---------hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence            3   3678888888 8888776         56778888 888888888888888777543      6788888888887


Q ss_pred             cc--cChhhcCCCccccC
Q psy12210        389 TE--LPPKAFANYKRLRR  404 (405)
Q Consensus       389 ~~--i~~~~f~~l~~L~~  404 (405)
                      ..  +++..|..+.+++.
T Consensus       306 ~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          306 QYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             CGGGSCGGGGTTCCCGGG
T ss_pred             cccccCccccccccceeE
Confidence            64  66677887777764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=3e-26  Score=234.11  Aligned_cols=162  Identities=16%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|+++++|++|++++|.+++..+-.+            ......+.+++++|.+..++...|...
T Consensus        29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------~~l~~L~~L~L~~n~l~~l~~~~~~~l   96 (680)
T 1ziw_A           29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC------------QKLPMLKVLNLQHNELSQLSDKTFAFC   96 (680)
T ss_dssp             EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH------------HHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH------------hcccCcCEEECCCCccCccChhhhccC
Confidence            57888999999888888899999999999988875322111            111223556777777777776554322


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      ..                     ++++++++|.++.+|.. +  .++|++|++++|.++.+++..+.++++|++|++++|
T Consensus        97 ~~---------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  155 (680)
T 1ziw_A           97 TN---------------------LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN  155 (680)
T ss_dssp             TT---------------------CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred             CC---------------------CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence            11                     14455555555444421 1  134455555555555444444444555555555555


Q ss_pred             cceeecccccC--CCCCCCEEEccCCcCcccChhhhhccc
Q psy12210        159 QISKVAVDAFQ--GLKSLTSLTLNNNNLTYLPDGVFAELF  196 (405)
Q Consensus       159 ~l~~~~~~~~~--~l~~L~~L~l~~n~l~~l~~~~f~~l~  196 (405)
                      .++.+.+..+.  .+++|+.|++++|.++.+++..|..++
T Consensus       156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  195 (680)
T 1ziw_A          156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG  195 (680)
T ss_dssp             CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSS
T ss_pred             cccccCHHHhhccccccccEEECCCCcccccChhhhhhhh
Confidence            44444433322  234444444444444444444444333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=2.4e-26  Score=234.76  Aligned_cols=351  Identities=17%  Similarity=0.152  Sum_probs=193.8

Q ss_pred             ccccCCCcCccCCchhhccccc--cceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccc
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFR--LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK   79 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~--L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~   79 (405)
                      .|++++|+++++.+.+|.+++.  |+.|++++|.+++..+            .........+.+++++|.+..+....|.
T Consensus       226 ~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~  293 (680)
T 1ziw_A          226 NLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN------------DSFAWLPQLEYFFLEYNNIQHLFSHSLH  293 (680)
T ss_dssp             EEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT------------TTTTTCTTCCEEECCSCCBSEECTTTTT
T ss_pred             EEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc------------ccccCcccccEeeCCCCccCccChhhhc
Confidence            4677888888877777777755  8888888887764221            1111112234456666666665544432


Q ss_pred             cCC-CCCCCCCCCCCC-----CCCC-----CCcccc-CceEEcCCCCccccCCCC---CCCccEEEccCCCC--CCCCcc
Q psy12210         80 CSG-PVEKPTGECAAE-----PSCP-----HPCRCA-DGIVDCREKGLNKVPILL---PEATTELRLEQNDI--TELPPK  142 (405)
Q Consensus        80 ~~~-~~~~~~~~~~~~-----~~~p-----~~~~c~-~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i--~~l~~~  142 (405)
                      ... .....+..+...     ...|     ....|. ++.+++++|.++.++...   .++++.|++++|.+  ..++..
T Consensus       294 ~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~  373 (680)
T 1ziw_A          294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE  373 (680)
T ss_dssp             TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTT
T ss_pred             CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchh
Confidence            221 111111111000     0111     111222 366666666666655432   14566666666552  233333


Q ss_pred             cccCC--CCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc-ccChhhhhcccCCcEEEeecCccccccCchHHHH
Q psy12210        143 AFANY--KRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLRTLRISENSFICDCHLSWLHR  219 (405)
Q Consensus       143 ~~~~l--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~  219 (405)
                      .|..+  .+|+.|++++|.++.+.+.+|.++++|+.|++++|.++ .++...|..+++|+.|++++|.+...        
T Consensus       374 ~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------  445 (680)
T 1ziw_A          374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL--------  445 (680)
T ss_dssp             TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC--------
T ss_pred             hhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee--------
Confidence            33322  35666666666666666666666666666666666665 34445566666666666666654311        


Q ss_pred             HHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy12210        220 WLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPC  299 (405)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  299 (405)
                          .+..+.....+....+.++.+..+...            -..+..........++++.++.+....+....     
T Consensus       446 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~------------p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-----  504 (680)
T 1ziw_A          446 ----TRNSFALVPSLQRLMLRRVALKNVDSS------------PSPFQPLRNLTILDLSNNNIANINDDMLEGLE-----  504 (680)
T ss_dssp             ----CTTTTTTCTTCCEEECTTSCCBCTTCS------------SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred             ----ChhhhhcCcccccchhccccccccccC------------CcccccCCCCCEEECCCCCCCcCChhhhcccc-----
Confidence                000111111112222222222111000            00111122233344555566655555554444     


Q ss_pred             cccCceeecCCCCCCcCCCC-----------CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcc
Q psy12210        300 RCADGIVDCREKGLNKVPIL-----------LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITE  366 (405)
Q Consensus       300 ~~~l~~l~l~~n~l~~~p~~-----------~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~  366 (405)
                        +|++|++++|.++.++..           ..+.++.|+++ |+++.++        +..|.++++ +.|+|++|+|+.
T Consensus       505 --~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~--------~~~~~~l~~L~~L~Ls~N~l~~  574 (680)
T 1ziw_A          505 --KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP--------VEVFKDLFELKIIDLGLNNLNT  574 (680)
T ss_dssp             --TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCC
T ss_pred             --ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC--------HHHcccccCcceeECCCCCCCc
Confidence              688888888888876321           12578888888 8888888        677888888 888888888888


Q ss_pred             cCcccccCCccCceeecccCCCcccChhhcC-CCcccc
Q psy12210        367 LPPKAFANYKRLRRIRLEQNDITELPPKAFA-NYKRLR  403 (405)
Q Consensus       367 i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~-~l~~L~  403 (405)
                      +++..|.++++|+.|+|++|+|+++++..|. .+++|+
T Consensus       575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  612 (680)
T 1ziw_A          575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT  612 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS
T ss_pred             CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC
Confidence            8888888888888888888888888877554 344443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1.6e-26  Score=224.88  Aligned_cols=291  Identities=18%  Similarity=0.209  Sum_probs=199.4

Q ss_pred             CCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce-eecccccCCCCCC
Q psy12210         96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKSL  174 (405)
Q Consensus        96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L  174 (405)
                      -||..|.|..+.++|++++++++|. +++++++|++++|.++.+++..|.++++|++|++++|.+. .+++..|.++++|
T Consensus         3 p~~~~c~~~~~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A            3 PGTSECSVIGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             ----CCEEETTEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             CccceeEEEccccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence            4788899999999999999999999 8899999999999999998888999999999999999987 6777889999999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC---------------
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI---------------  239 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l---------------  239 (405)
                      ++|++++|.++.+.+..|..+++|+.|++++|.+...     ...     .........+....+               
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  151 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGA-----VLS-----GNFFKPLTSLEMLVLRDNNIKKIQPASFFL  151 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTH-----HHH-----SSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCcc-----ccC-----cccccCcccCCEEECCCCccCccCcccccC
Confidence            9999999999999888899999999999999987621     000     000111122222233               


Q ss_pred             ----------CCCcccccCCCcccccC-cccccccccee-------------------cccccCCCCCCCCCCCCCC---
Q psy12210        240 ----------KGQNILDIPEHEFKCSG-SSMETRSKIYR-------------------EECSTDFHPYNSCPVEKPT---  286 (405)
Q Consensus       240 ----------~~~~l~~l~~~~~~~~~-~~~~~~~~~~~-------------------~~~~~~~~~~~~~~i~~~~---  286 (405)
                                .++.+..+....+.... .....+.....                   .........++.+.+....   
T Consensus       152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence                      33333333322221110 00000000000                   0001111112222111000   


Q ss_pred             --------------------------CCCCC---CCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecc
Q psy12210        287 --------------------------GECAA---EPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSI  333 (405)
Q Consensus       287 --------------------------~~~~~---~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i  333 (405)
                                                ...+.   ..........+++.+++++|.++.+++..   .+++++|+++ |++
T Consensus       232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  311 (455)
T 3v47_A          232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI  311 (455)
T ss_dssp             HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence                                      00000   00000001136888888888888775443   3689999999 999


Q ss_pred             eeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        334 DRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       334 ~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      .+++        +..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+++++++..|.++++|++|
T Consensus       312 ~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  376 (455)
T 3v47_A          312 NKID--------DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL  376 (455)
T ss_dssp             CEEC--------TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccC--------hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence            9988        788999999 999999999999988889999999999999999999988889998888764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=9.7e-27  Score=234.57  Aligned_cols=174  Identities=21%  Similarity=0.207  Sum_probs=124.7

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|+++++|++|++++|.+++..            +.........+.+++++|.++.+....|...
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~------------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l  103 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE------------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGL  103 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC------------HHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence            5788888888888888888888888888888876321            1111222334556777777777654444222


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-CC--CCCccEEEccCCCCCCCC-cccccCCCCCcEEecCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LL--PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSK  157 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~~--~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~  157 (405)
                      .                     .++++++++|.++.+|. .+  .++|++|++++|.++.+. +..|+++++|+.|++++
T Consensus       104 ~---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A          104 T---------------------SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             T---------------------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             c---------------------cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            1                     13888888888888773 33  367888888888888643 45688888888888888


Q ss_pred             CcceeecccccCCCCCCC----EEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        158 NQISKVAVDAFQGLKSLT----SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       158 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      |.++.+.+..|..+.+|+    .|++++|.++.+++..|... +|+.|++++|.+.
T Consensus       163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~  217 (606)
T 3vq2_A          163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS  217 (606)
T ss_dssp             SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred             CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence            888888777777666554    78888888888888777654 7888888888653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=1.3e-26  Score=234.54  Aligned_cols=355  Identities=15%  Similarity=0.150  Sum_probs=208.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|||++|+|+++++.+|.++++|++|+|++|+|++..+            ........++.+++++|+++.++...|...
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~------------~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L  123 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED------------GAYQSLSHLSTLILTGNPIQSLALGAFSGL  123 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT------------TTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcCh------------hHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence            68999999999999999999999999999999873211            111222335567778888888777666433


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCC-cccccCCCCCcEEecCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSK  157 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~  157 (405)
                      ..                     ++++++++|+++.+|...   .++|++|++++|.++.++ +..+..+++|++|++++
T Consensus       124 ~~---------------------L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  182 (635)
T 4g8a_A          124 SS---------------------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  182 (635)
T ss_dssp             TT---------------------CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred             CC---------------------CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence            22                     278888888888877542   257888888888887654 34567788888888888


Q ss_pred             CcceeecccccCCCCCC----CEEEccCCcCcccChhhhhcccCCcEEEeecCc--------------------------
Q psy12210        158 NQISKVAVDAFQGLKSL----TSLTLNNNNLTYLPDGVFAELFRLRTLRISENS--------------------------  207 (405)
Q Consensus       158 n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~--------------------------  207 (405)
                      |.++.+.+..|..+.++    ..++++.|.+..++++.+.. ..++.+++.+|.                          
T Consensus       183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  261 (635)
T 4g8a_A          183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  261 (635)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             ccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence            88887776666544333    24556666655554433321 122223332221                          


Q ss_pred             ------------------------------------------------------------------------------cc
Q psy12210        208 ------------------------------------------------------------------------------FI  209 (405)
Q Consensus       208 ------------------------------------------------------------------------------l~  209 (405)
                                                                                                    +.
T Consensus       262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  341 (635)
T 4g8a_A          262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG  341 (635)
T ss_dssp             TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES
T ss_pred             ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc
Confidence                                                                                          10


Q ss_pred             cccC--chHHHHH-H----hhcCCCCCccccCCCCCCCCCcccccCCC-------------------------ccccc-C
Q psy12210        210 CDCH--LSWLHRW-L----KRYPRLGLYTKCFAPSHIKGQNILDIPEH-------------------------EFKCS-G  256 (405)
Q Consensus       210 ~~~~--l~~~~~~-~----~~~~~~~~~~~~~~~~~l~~~~l~~l~~~-------------------------~~~~~-~  256 (405)
                      ....  +..+... +    ............+....+..+.+......                         .+... .
T Consensus       342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~  421 (635)
T 4g8a_A          342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ  421 (635)
T ss_dssp             SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred             CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence            0000  0000000 0    00000000111122222333222211100                         00000 0


Q ss_pred             cccccc--c--------cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCC-cC-CCCC--CC
Q psy12210        257 SSMETR--S--------KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN-KV-PILL--PE  322 (405)
Q Consensus       257 ~~~~~~--~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-~~-p~~~--~~  322 (405)
                      .....+  .        ..+..........++.+.+.......+...       ..++.+++++|.+. .+ |..+  .+
T Consensus       422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-------~~L~~L~Ls~N~~~~~~~~~~~~~l~  494 (635)
T 4g8a_A          422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-------SSLEVLKMAGNSFQENFLPDIFTELR  494 (635)
T ss_dssp             CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-------TTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccchhhhhccccccccccccccccccccccccccccccccccccccc-------hhhhhhhhhhcccccccCchhhhhcc
Confidence            000000  0        001111111112222333333333333332       37889999998743 33 3332  36


Q ss_pred             CceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC-
Q psy12210        323 ATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY-  399 (405)
Q Consensus       323 ~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l-  399 (405)
                      +++.|+++ |++++++        +..|+++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++.+|.++ 
T Consensus       495 ~L~~L~Ls~N~L~~l~--------~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  566 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLS--------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  566 (635)
T ss_dssp             TCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred             ccCEEECCCCccCCcC--------hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence            89999999 9999998        889999999 999999999999999999999999999999999999999888877 


Q ss_pred             ccccCC
Q psy12210        400 KRLRRM  405 (405)
Q Consensus       400 ~~L~~L  405 (405)
                      ++|++|
T Consensus       567 ~~L~~L  572 (635)
T 4g8a_A          567 SSLAFL  572 (635)
T ss_dssp             TTCCEE
T ss_pred             CcCCEE
Confidence            567653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.94  E-value=1.4e-26  Score=217.55  Aligned_cols=241  Identities=21%  Similarity=0.331  Sum_probs=173.1

Q ss_pred             CCCCC-ccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce-eecccccCCCCC
Q psy12210         96 SCPHP-CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS-KVAVDAFQGLKS  173 (405)
Q Consensus        96 ~~p~~-~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~  173 (405)
                      +||+. |+|..+.++|++++++++|..++++++.|+|++|+|+.+++++|.++++|++|+|++|.+. .+++.+|.++++
T Consensus         1 gCp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~   80 (350)
T 4ay9_X            1 GCHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK   80 (350)
T ss_dssp             -CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred             CCCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence            59865 9999999999999999999999999999999999999999999999999999999999985 567778999999


Q ss_pred             CCE-EEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC-CCCcccccCCCc
Q psy12210        174 LTS-LTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI-KGQNILDIPEHE  251 (405)
Q Consensus       174 L~~-L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~l~~~~  251 (405)
                      +.+ +.+..|+++.+++++|..+++|+.|++++|.+....            +..+..........+ ....+..++...
T Consensus        81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~------------~~~~~~~~~l~~l~l~~~~~i~~l~~~~  148 (350)
T 4ay9_X           81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP------------DVHKIHSLQKVLLDIQDNINIHTIERNS  148 (350)
T ss_dssp             CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC------------CCTTCCBSSCEEEEEESCTTCCEECTTS
T ss_pred             hhhhhcccCCcccccCchhhhhccccccccccccccccCC------------chhhcccchhhhhhhccccccccccccc
Confidence            886 556779999999999999999999999999865110            000000000000000 001111122111


Q ss_pred             ccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCC--CceEEEE
Q psy12210        252 FKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE--ATTELTY  329 (405)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~--~l~~L~l  329 (405)
                                                            +...      ...++.|++++|+|+.+|..++.  .+++|++
T Consensus       149 --------------------------------------f~~~------~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          149 --------------------------------------FVGL------SFESVILWLNKNGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             --------------------------------------STTS------BSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred             --------------------------------------hhhc------chhhhhhccccccccCCChhhccccchhHHhh
Confidence                                                  1111      11477788888888888877663  5667777


Q ss_pred             E--ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        330 M--VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       330 ~--n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      .  |.++.++        .+.|+++++ +.|+|++|+|+.+++..|.++++|+.+++  +.++.+|+  +.++++|+.
T Consensus       185 ~~~n~l~~i~--------~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP~--l~~l~~L~~  250 (350)
T 4ay9_X          185 SDNNNLEELP--------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALME  250 (350)
T ss_dssp             TTCTTCCCCC--------TTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCCC--TTTCCSCCE
T ss_pred             ccCCcccCCC--------HHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCCC--chhCcChhh
Confidence            5  7788887        677888888 88888888888888777766666555444  34677764  555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.94  E-value=7.2e-27  Score=207.53  Aligned_cols=214  Identities=24%  Similarity=0.434  Sum_probs=185.4

Q ss_pred             CCCCCCccccC---ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCC
Q psy12210         95 PSCPHPCRCAD---GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQG  170 (405)
Q Consensus        95 ~~~p~~~~c~~---~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~  170 (405)
                      +.||..|.|..   ..++|.+  ++++|. ++.+++.|++++|.++.+++..|.++++|+.|++++|. ++.+++..|.+
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~   78 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN   78 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEES
T ss_pred             CCCCCCCeeCCCCcceeEccC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCC
Confidence            57999999965   4455766  999999 88999999999999999999889999999999999997 99999889999


Q ss_pred             CCCCCEEEccC-CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCC
Q psy12210        171 LKSLTSLTLNN-NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPE  249 (405)
Q Consensus       171 l~~L~~L~l~~-n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~  249 (405)
                      +++|++|++++ |.++.+++.+|..+++|+.|++++|.+.                                    .++.
T Consensus        79 l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~------------------------------------~lp~  122 (239)
T 2xwt_C           79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK------------------------------------MFPD  122 (239)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC------------------------------------SCCC
T ss_pred             CcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc------------------------------------cccc
Confidence            99999999999 9999999999999999999999999854                                    1221


Q ss_pred             CcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc---eeecCCC-CCCcCCCCCC---C
Q psy12210        250 HEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG---IVDCREK-GLNKVPILLP---E  322 (405)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~---~l~l~~n-~l~~~p~~~~---~  322 (405)
                        +...                                             .+++   +|++++| .++.+|...+   +
T Consensus       123 --~~~l---------------------------------------------~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C          123 --LTKV---------------------------------------------YSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             --CTTC---------------------------------------------CBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             --cccc---------------------------------------------cccccccEEECCCCcchhhcCcccccchh
Confidence              1111                                             0355   9999999 9999987654   5


Q ss_pred             Cce-EEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCC-CcccCcccccCC-ccCceeecccCCCcccChhhcC
Q psy12210        323 ATT-ELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQND-ITELPPKAFANY-KRLRRIRLEQNDITELPPKAFA  397 (405)
Q Consensus       323 ~l~-~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~-i~~i~~~~~~~l-~~L~~L~L~~N~l~~i~~~~f~  397 (405)
                      .++ .|+++ |+++.++        ...|.. ++ +.|+|++|+ ++.+++..|.++ ++|+.|++++|++++++...|.
T Consensus       156 ~L~~~L~l~~n~l~~i~--------~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~  226 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQ--------GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE  226 (239)
T ss_dssp             SSEEEEECCSCCCCEEC--------TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT
T ss_pred             cceeEEEcCCCCCcccC--------HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc
Confidence            788 99999 9999998        667777 78 999999995 999999999999 9999999999999999988888


Q ss_pred             CCcccc
Q psy12210        398 NYKRLR  403 (405)
Q Consensus       398 ~l~~L~  403 (405)
                      +++.|.
T Consensus       227 ~L~~L~  232 (239)
T 2xwt_C          227 HLKELI  232 (239)
T ss_dssp             TCSEEE
T ss_pred             cCceee
Confidence            888775

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=3e-26  Score=230.97  Aligned_cols=362  Identities=10%  Similarity=0.023  Sum_probs=202.4

Q ss_pred             CccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcccc
Q psy12210          1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC   80 (405)
Q Consensus         1 ~~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~   80 (405)
                      ..|+|++|+|+++++.+|.++++|++|++++|.+++..            +.........+.+++++|.+..++...+..
T Consensus        59 ~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~------------p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  126 (606)
T 3vq2_A           59 QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS------------PGSFSGLTSLENLVAVETKLASLESFPIGQ  126 (606)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC------------TTSSTTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred             cEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC------------hhhcCCcccCCEEEccCCccccccccccCC
Confidence            36899999999999999999999999999999987421            222223334566778888888777554433


Q ss_pred             C-CCCCCCCCCCCCCC-C-CCCCcccc-CceEEcCCCCccccCCCCC-------CCccEEEccCCCCCCCCcccccCCCC
Q psy12210         81 S-GPVEKPTGECAAEP-S-CPHPCRCA-DGIVDCREKGLNKVPILLP-------EATTELRLEQNDITELPPKAFANYKR  149 (405)
Q Consensus        81 ~-~~~~~~~~~~~~~~-~-~p~~~~c~-~~~l~~~~n~l~~lp~~~~-------~~L~~L~L~~n~i~~l~~~~~~~l~~  149 (405)
                      . ......+..+.... . ......+. ++.+++++|.++.++....       ..+..|++++|.++.+++..+... +
T Consensus       127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~  205 (606)
T 3vq2_A          127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K  205 (606)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred             CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence            2 33334444444332 1 22233443 4888999988888765422       224588999888888776655433 5


Q ss_pred             CcEEecCCCcce--------------------------------------------------------------------
Q psy12210        150 LRRIDLSKNQIS--------------------------------------------------------------------  161 (405)
Q Consensus       150 L~~L~ls~n~l~--------------------------------------------------------------------  161 (405)
                      |+.|++++|.+.                                                                    
T Consensus       206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~  285 (606)
T 3vq2_A          206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA  285 (606)
T ss_dssp             EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred             eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence            555555555432                                                                    


Q ss_pred             -------------eecccccCCCCCCCEEEccCCcCcccChh-------------------hhhcccCCcEEEeecCccc
Q psy12210        162 -------------KVAVDAFQGLKSLTSLTLNNNNLTYLPDG-------------------VFAELFRLRTLRISENSFI  209 (405)
Q Consensus       162 -------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-------------------~f~~l~~L~~L~l~~N~l~  209 (405)
                                   .++  .+..+++|++|++++|.+..++.-                   .+..+++|+.|++++|.+.
T Consensus       286 ~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          286 NVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             TCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE
T ss_pred             CCCEEEecCccchhhh--hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccC
Confidence                         221  344455566666666666555420                   1223334444444444433


Q ss_pred             cccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccC-ccccccc----------cceecccccCCCCCC
Q psy12210        210 CDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG-SSMETRS----------KIYREECSTDFHPYN  278 (405)
Q Consensus       210 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~  278 (405)
                      ..-..   .....       ....+....+.++.+..++. .+.... .....+.          ..+..........++
T Consensus       364 ~~~~~---~~~~~-------~~~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  432 (606)
T 3vq2_A          364 FSGCC---SYSDL-------GTNSLRHLDLSFNGAIIMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS  432 (606)
T ss_dssp             EEEEC---CHHHH-------CCSCCCEEECCSCSEEEECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred             CCcch---hhhhc-------cCCcccEeECCCCccccchh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence            11000   00000       11112222333333333221 111000 0000000          011112223333444


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc--CCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCc
Q psy12210        279 SCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK--VPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWT  353 (405)
Q Consensus       279 ~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~--~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~  353 (405)
                      .+.+.......+....       +|++|++++|.++.  +|..+  .++|+.|+++ |++.+++        +..|++++
T Consensus       433 ~n~l~~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~  497 (606)
T 3vq2_A          433 YTNTKIDFDGIFLGLT-------SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS--------WGVFDTLH  497 (606)
T ss_dssp             TSCCEECCTTTTTTCT-------TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--------TTTTTTCT
T ss_pred             CCCCCccchhhhcCCC-------CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccC--------hhhhcccc
Confidence            5555544444443333       67778888777775  34333  3677788888 7777776        67777788


Q ss_pred             c-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc-cccC
Q psy12210        354 N-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK-RLRR  404 (405)
Q Consensus       354 ~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~-~L~~  404 (405)
                      + +.|+|++|+++.+.+..|.++++|+.|+|++|++++++.. |..+. +|++
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~  549 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAF  549 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCE
T ss_pred             cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcE
Confidence            8 8888888888887777777788888888888888877765 55553 3443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=9.6e-26  Score=225.26  Aligned_cols=153  Identities=19%  Similarity=0.176  Sum_probs=111.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      ++++++|+++++|...   .++|+.|++++|.+++..+            .........+.+++++|.++.++...|...
T Consensus        35 ~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   99 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRM------------PDISFLSELRVLRLSHNRIRSLDFHVFLFN   99 (562)
T ss_dssp             EEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCG------------GGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             EEEcCCCCCccCCCCC---CCCcCEEECCCCCccccCh------------hhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence            5788999999988754   2788999999999874221            111122234567788888888876665433


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCC-cccccCCCCCcEEecCCCcc
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQI  160 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~n~l  160 (405)
                      ..                     ++++++++|.++++|..-.++|++|++++|.++.++ +..|+++++|+.|++++|.+
T Consensus       100 ~~---------------------L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          100 QD---------------------LEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             TT---------------------CCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             CC---------------------CCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence            22                     389999999999999776678999999999999876 35789999999999999988


Q ss_pred             eeecccccCCCCCC--CEEEccCCcC--cccChhhhh
Q psy12210        161 SKVAVDAFQGLKSL--TSLTLNNNNL--TYLPDGVFA  193 (405)
Q Consensus       161 ~~~~~~~~~~l~~L--~~L~l~~n~l--~~l~~~~f~  193 (405)
                      +..   .+.++++|  +.|++++|.+  +...+..|.
T Consensus       159 ~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~  192 (562)
T 3a79_B          159 RQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQ  192 (562)
T ss_dssp             CTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEE
T ss_pred             ccC---chhhhhhceeeEEEeecccccccccCccccc
Confidence            764   35555555  8889988887  544443443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=2.7e-26  Score=218.86  Aligned_cols=268  Identities=18%  Similarity=0.236  Sum_probs=189.3

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|.++.+++..|.++++|++|++++|.++                                    .++...|...
T Consensus        49 ~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~------------------------------------~~~~~~~~~l   92 (390)
T 3o6n_A           49 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------------------------------------EIDTYAFAYA   92 (390)
T ss_dssp             EEEEESCEESEECTHHHHHCCCCSEEECTTSCCC------------------------------------EECTTTTTTC
T ss_pred             EEEecCCchhhCChhHhcccccCcEEECCCCccc------------------------------------ccChhhccCC
Confidence            3566677777777766677777777777777664                                    3332222111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|.++.+|...   .++|++|++++|.++.+++..|.++++|++|++++|
T Consensus        93 ~---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n  151 (390)
T 3o6n_A           93 H---------------------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN  151 (390)
T ss_dssp             T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             C---------------------CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC
Confidence            1                     1277788888887776542   357888888888888888877788888888888888


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH  238 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (405)
                      .++.+.+..|.++++|++|++++|.++.++   +..+++|+.+++++|.+....                 .........
T Consensus       152 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~-----------------~~~~L~~L~  211 (390)
T 3o6n_A          152 NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLA-----------------IPIAVEELD  211 (390)
T ss_dssp             CCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEE-----------------CCSSCSEEE
T ss_pred             ccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccC-----------------CCCcceEEE
Confidence            888888777888888888888888888875   355778888888888754100                 000111111


Q ss_pred             CCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC
Q psy12210        239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI  318 (405)
Q Consensus       239 l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~  318 (405)
                      +.++.+..+                                      +...          ..+++.|++++|.++.++.
T Consensus       212 l~~n~l~~~--------------------------------------~~~~----------~~~L~~L~l~~n~l~~~~~  243 (390)
T 3o6n_A          212 ASHNSINVV--------------------------------------RGPV----------NVELTILKLQHNNLTDTAW  243 (390)
T ss_dssp             CCSSCCCEE--------------------------------------ECCC----------CSSCCEEECCSSCCCCCGG
T ss_pred             CCCCeeeec--------------------------------------cccc----------cccccEEECCCCCCcccHH
Confidence            222222211                                      1110          0269999999999998752


Q ss_pred             C-CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhh
Q psy12210        319 L-LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA  395 (405)
Q Consensus       319 ~-~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~  395 (405)
                      . ..+++++|+++ |.+.++.        +..|.++++ +.|+|++|+++.++.. +..+++|+.|+|++|++++++.. 
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~-  313 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERN-  313 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECCSSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGG-
T ss_pred             HcCCCCccEEECCCCcCCCcC--------hhHccccccCCEEECCCCcCcccCcc-cCCCCCCCEEECCCCcceecCcc-
Confidence            2 24799999999 9999997        788999999 9999999999999764 57789999999999999998864 


Q ss_pred             cCCCccccC
Q psy12210        396 FANYKRLRR  404 (405)
Q Consensus       396 f~~l~~L~~  404 (405)
                      +..+++|++
T Consensus       314 ~~~l~~L~~  322 (390)
T 3o6n_A          314 QPQFDRLEN  322 (390)
T ss_dssp             HHHHTTCSE
T ss_pred             ccccCcCCE
Confidence            444555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1e-26  Score=235.16  Aligned_cols=371  Identities=11%  Similarity=0.094  Sum_probs=193.9

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCccc------ccchh------hH------------------------HHH
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFI------CDCHL------SW------------------------LHR   45 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~------~~~~~------~~------------------------l~~   45 (405)
                      .|+|+++++++..|.+|+++++|+.|+|++|.+.      +..+.      ..                        +..
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence            5899999999777778999999999999999762      20000      00                        000


Q ss_pred             HHh-----------------------------hCCCccccccccCCCcccCCcccc------------------cCCCcc
Q psy12210         46 WLK-----------------------------RYPRLGLYTKCFAPSHIKGQNILD------------------IPEHEF   78 (405)
Q Consensus        46 ~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~l~~------------------l~~~~~   78 (405)
                      ...                             ..|.........+.+++++|.+..                  +|....
T Consensus       165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~  244 (636)
T 4eco_A          165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLK  244 (636)
T ss_dssp             HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             HhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhh
Confidence            000                             011111111223345566666666                  555443


Q ss_pred             --ccCCCCCCCCCCCCCCCCCC-CCccc-cCceEEcCCCC-ccc--cCCCCC--------CCccEEEccCCCCCCCCc-c
Q psy12210         79 --KCSGPVEKPTGECAAEPSCP-HPCRC-ADGIVDCREKG-LNK--VPILLP--------EATTELRLEQNDITELPP-K  142 (405)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~p-~~~~c-~~~~l~~~~n~-l~~--lp~~~~--------~~L~~L~L~~n~i~~l~~-~  142 (405)
                        ....+....+..+.....-| ..+.+ .++.+++++|+ ++.  +|..+.        ++|+.|++++|.++.++. +
T Consensus       245 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~  324 (636)
T 4eco_A          245 WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET  324 (636)
T ss_dssp             GGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred             hcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence              33334444444444333333 23333 24777777776 653  664431        567777777777776664 2


Q ss_pred             cccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccC-CcEEEeecCccccccCchHHHHHH
Q psy12210        143 AFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRWL  221 (405)
Q Consensus       143 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~-L~~L~l~~N~l~~~~~l~~~~~~~  221 (405)
                      .+.++++|+.|++++|.+++..| .|..+++|++|++++|.++.++.. +..+++ |+.|++++|.+...          
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~l----------  392 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYI----------  392 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSC----------
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCccc----------
Confidence            46777777777777777773333 567777777777777777766653 566777 77777777765411          


Q ss_pred             hhcCCCCCcc--ccCCCCCCCCCcccccCCCccc-cc-----Ccccccc----------c-cceecccccCCCCCCCCCC
Q psy12210        222 KRYPRLGLYT--KCFAPSHIKGQNILDIPEHEFK-CS-----GSSMETR----------S-KIYREECSTDFHPYNSCPV  282 (405)
Q Consensus       222 ~~~~~~~~~~--~~~~~~~l~~~~l~~l~~~~~~-~~-----~~~~~~~----------~-~~~~~~~~~~~~~~~~~~i  282 (405)
                         +......  ..+....+.++.+....+..+. +.     ...+..+          - ..+..........++.+.+
T Consensus       393 ---p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          393 ---PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             ---CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred             ---chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence               0000000  0111122222333222211111 00     0000000          0 0011112223333444444


Q ss_pred             CCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC----CCceEEEEE-ecceeeeccchhccccccccCCcc-ce
Q psy12210        283 EKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP----EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RS  356 (405)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~----~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~  356 (405)
                      +.++...+...........+|+.|++++|+++.+|..++    ++|+.|+++ |+++++|         ..+..+++ +.
T Consensus       470 ~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip---------~~~~~l~~L~~  540 (636)
T 4eco_A          470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP---------TQPLNSSTLKG  540 (636)
T ss_dssp             SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCC---------CGGGGCSSCCE
T ss_pred             CCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcC---------hhhhcCCCCCE
Confidence            443333222110000000156777777777776665432    566777777 7776655         45666777 77


Q ss_pred             EEec------CCCCcccCcccccCCccCceeecccCCCcccChhhc
Q psy12210        357 RRLE------QNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF  396 (405)
Q Consensus       357 L~L~------~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f  396 (405)
                      |+|+      +|++....+..|..+++|+.|+|++|+++.+|...+
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~  586 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT  586 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh
Confidence            7773      455555555556777777777777777777766544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=1.7e-25  Score=208.67  Aligned_cols=281  Identities=18%  Similarity=0.168  Sum_probs=202.1

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .+++++++++.+|...   .++|+.|++++|.+++..+            .........+.++++++.+..+....|...
T Consensus        37 ~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  101 (332)
T 2ft3_A           37 VVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRK------------DDFKGLQHLYALVLVNNKISKIHEKAFSPL  101 (332)
T ss_dssp             EEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECT------------TTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred             EEECCCCCccccCCCC---CCCCeEEECCCCcCCccCH------------hHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence            4678888888887743   3678888998888863211            111122234556677777777655444322


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                      .                     .++++++++|.++.+|..+++++++|++++|.++.+++..|.++++|+.|++++|.++
T Consensus       102 ~---------------------~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          102 R---------------------KLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             T---------------------TCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             C---------------------CCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            1                     1389999999999999888889999999999999999888999999999999999986


Q ss_pred             e--ecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC
Q psy12210        162 K--VAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI  239 (405)
Q Consensus       162 ~--~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  239 (405)
                      .  +.+..|..+ +|+.|++++|.++.++...+   ++|+.|++++|.+...            .+........+....+
T Consensus       161 ~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~------------~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          161 NSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAI------------ELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             GGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCC------------CTTSSTTCTTCSCCBC
T ss_pred             cCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCcc------------CHHHhcCCCCCCEEEC
Confidence            4  566777777 89999999999999887543   6899999999876510            1111122223333444


Q ss_pred             CCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC
Q psy12210        240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL  319 (405)
Q Consensus       240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~  319 (405)
                      .++.+..+....+                                      ....       +|+.|++++|+++.+|..
T Consensus       225 ~~N~l~~~~~~~~--------------------------------------~~l~-------~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          225 GHNQIRMIENGSL--------------------------------------SFLP-------TLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             CSSCCCCCCTTGG--------------------------------------GGCT-------TCCEEECCSSCCCBCCTT
T ss_pred             CCCcCCcCChhHh--------------------------------------hCCC-------CCCEEECCCCcCeecChh
Confidence            4444444333322                                      2222       699999999999999876


Q ss_pred             C--CCCceEEEEE-ecceeeeccchhccccccccCC------cc-ceEEecCCCCc--ccCcccccCCccCceeecccCC
Q psy12210        320 L--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRW------TN-RSRRLEQNDIT--ELPPKAFANYKRLRRIRLEQND  387 (405)
Q Consensus       320 ~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l------~~-~~L~L~~N~i~--~i~~~~~~~l~~L~~L~L~~N~  387 (405)
                      +  .+.++.|+++ |.++.++        ...|...      .. +.+++++|.+.  .+.+.+|..+++|+.+++++|+
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~--------~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVG--------VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCC--------TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhcCccCCEEECCCCCCCccC--------hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            5  4789999999 9999998        5555543      55 89999999988  7888889999999999999984

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=3.3e-26  Score=236.52  Aligned_cols=194  Identities=20%  Similarity=0.173  Sum_probs=109.9

Q ss_pred             ccccCCCcCccCCchh---hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcc
Q psy12210          2 PRTLNNNNLTYLPDGV---FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF   78 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~---f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~   78 (405)
                      .|+|++|+|++..+..   +.++++|++|++++|.+++..+..              .....+.+++++|.+........
T Consensus       155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--------------~l~~L~~L~Ls~n~l~~~~~~l~  220 (768)
T 3rgz_A          155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--------------RCVNLEFLDVSSNNFSTGIPFLG  220 (768)
T ss_dssp             EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCT--------------TCTTCCEEECCSSCCCSCCCBCT
T ss_pred             EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcc--------------cCCcCCEEECcCCcCCCCCcccc
Confidence            5889999999888876   788899999999999887543321              11122334455555444222211


Q ss_pred             ccCCCCCCCCCCCCCCCCCC-CCcccc-CceEEcCCCCccc-cCCCCCCCccEEEccCCCCCCCCcccccC-CCCCcEEe
Q psy12210         79 KCSGPVEKPTGECAAEPSCP-HPCRCA-DGIVDCREKGLNK-VPILLPEATTELRLEQNDITELPPKAFAN-YKRLRRID  154 (405)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~p-~~~~c~-~~~l~~~~n~l~~-lp~~~~~~L~~L~L~~n~i~~l~~~~~~~-l~~L~~L~  154 (405)
                      .........+.++.....-| ....|. ++.+++++|.++. +|....+++++|++++|.+++..+..+.+ +++|++|+
T Consensus       221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~  300 (768)
T 3rgz_A          221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD  300 (768)
T ss_dssp             TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred             cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence            11222222333332221111 122222 3667777766653 33333356666666666666332223333 36666666


Q ss_pred             cCCCcceeecccccCCCCCCCEEEccCCcCc-ccChhhhhcccCCcEEEeecCccc
Q psy12210        155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLT-YLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       155 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      +++|.++...|..|..+++|++|++++|.++ .++.+.|..+++|+.|++++|.+.
T Consensus       301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~  356 (768)
T 3rgz_A          301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS  356 (768)
T ss_dssp             CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred             CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence            6666666666666666666666666666665 555555666666666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=5e-25  Score=230.00  Aligned_cols=273  Identities=19%  Similarity=0.178  Sum_probs=150.0

Q ss_pred             ceEEcCCCCcccc-CCCC--CCCccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEc
Q psy12210        106 GIVDCREKGLNKV-PILL--PEATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTL  179 (405)
Q Consensus       106 ~~l~~~~n~l~~l-p~~~--~~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l  179 (405)
                      +++++++|.++.+ |..+  .++|++|++++|.+++..+  ..|.++++|++|++++|.++.+.+ ..|.++++|++|++
T Consensus        76 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           76 RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             CEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             CEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            6666666666665 3333  2466777777777765222  236667777777777777666543 35666777777777


Q ss_pred             cCCcCcccChhhhhcc--cCCcEEEeecCccccccCchHHHHHHhhcCCCCCccc------cCCCCCCCCCcccccCCCc
Q psy12210        180 NNNNLTYLPDGVFAEL--FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTK------CFAPSHIKGQNILDIPEHE  251 (405)
Q Consensus       180 ~~n~l~~l~~~~f~~l--~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~l~~l~~~~  251 (405)
                      ++|.++.+.+..|..+  ++|+.|++++|.+...            .+.......      .+....+.++.+.......
T Consensus       156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~------------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  223 (844)
T 3j0a_A          156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR------------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN  223 (844)
T ss_dssp             ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC------------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred             CCCcCCeeCHHHcccccCCccceEECCCCccccc------------cccchhhcCCccccCceeEEecCCCcCchhHHHH
Confidence            7777766666666655  6677777776665421            000000000      0111122222221111111


Q ss_pred             ccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEE
Q psy12210        252 FKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELT  328 (405)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~  328 (405)
                      +.............+.  ....-..+....+.......+...     +..+++.|++++|.++.++...+   ++++.|+
T Consensus       224 ~~~~l~~~~l~~L~l~--~~~~~~~~~~~~l~~~~~~~f~~l-----~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  296 (844)
T 3j0a_A          224 FSNAISKSQAFSLILA--HHIMGAGFGFHNIKDPDQNTFAGL-----ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN  296 (844)
T ss_dssp             GGGTSCSCCBSEEECC--SSCCBCSSSCSSSTTGGGTTTTTT-----TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEE
T ss_pred             HHhhcCcccccceecc--cccccccccccccCCCChhhhhcc-----ccCCccEEECCCCcccccChhhhhcCCCCCEEE
Confidence            1100000000000000  000000011111222222222211     12368888888888877755443   5778888


Q ss_pred             EE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        329 YM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       329 l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      ++ |.+..++        +..|.++++ +.|+|++|+++.+.+..|.++++|+.|+|++|+++.+++..|.++++|++|
T Consensus       297 L~~n~i~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  367 (844)
T 3j0a_A          297 LAYNKINKIA--------DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL  367 (844)
T ss_dssp             EESCCCCEEC--------TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred             CCCCcCCCCC--------hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence            88 8888877        677888888 888888888888877778888888888888888888887777777777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.3e-26  Score=237.55  Aligned_cols=374  Identities=11%  Similarity=0.084  Sum_probs=219.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEc-cCCcccccchhh-------------------H----------------HHH
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRI-SENSFICDCHLS-------------------W----------------LHR   45 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l-~~n~~~~~~~~~-------------------~----------------l~~   45 (405)
                      .|+|++|++.+..|.+|+++++|+.|+| ++|.++|..+..                   +                +..
T Consensus       327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            5899999999777778999999999999 899887652111                   0                000


Q ss_pred             HHhh-----------------------------CCCccccccccCCCcccCCcccc------------------cCCCcc
Q psy12210         46 WLKR-----------------------------YPRLGLYTKCFAPSHIKGQNILD------------------IPEHEF   78 (405)
Q Consensus        46 ~~~~-----------------------------~~~~~~~~~~~~~~~l~~~~l~~------------------l~~~~~   78 (405)
                      .+..                             .|...........+++++|.+..                  +|....
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhh
Confidence            1110                             11111111223445666676666                  555442


Q ss_pred             --ccCCCCCCCCCCCCCCCCCC-CCccc-cCceEEcCCCC-ccc--cCCCC---------CCCccEEEccCCCCCCCCc-
Q psy12210         79 --KCSGPVEKPTGECAAEPSCP-HPCRC-ADGIVDCREKG-LNK--VPILL---------PEATTELRLEQNDITELPP-  141 (405)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~p-~~~~c-~~~~l~~~~n~-l~~--lp~~~---------~~~L~~L~L~~n~i~~l~~-  141 (405)
                        ....+....+..+.....-| ..+.+ .++.+++++|+ ++.  +|..+         .++|+.|++++|.++.+|. 
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~  566 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS  566 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred             hccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence              33334444444544333333 23333 34888888887 663  66432         1378888888888887765 


Q ss_pred             ccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccC-CcEEEeecCccccccCchHHHHH
Q psy12210        142 KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR-LRTLRISENSFICDCHLSWLHRW  220 (405)
Q Consensus       142 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~-L~~L~l~~N~l~~~~~l~~~~~~  220 (405)
                      ..|.++++|+.|++++|.++.++  .|..+++|+.|++++|.++.++.. +..+++ |+.|++++|.+...         
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~l---------  634 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNKLKYI---------  634 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSCCCSC---------
T ss_pred             hhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHH-HhhccccCCEEECcCCCCCcC---------
Confidence            35788888888888888888554  678888888888888888877654 677777 88888888876511         


Q ss_pred             HhhcCCCCCccc--cCCCCCCCCCcccccCCCcc------cccC--------cccccccc-ceecccccCCCCCCCCCCC
Q psy12210        221 LKRYPRLGLYTK--CFAPSHIKGQNILDIPEHEF------KCSG--------SSMETRSK-IYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       221 ~~~~~~~~~~~~--~~~~~~l~~~~l~~l~~~~~------~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~i~  283 (405)
                          +.......  .+....+.++.+....+...      ....        .....+-. .+..........++.+.+.
T Consensus       635 ----p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          635 ----PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             ----CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             ----chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence                00000000  01111222222221111000      0000        00000000 0111223344455566666


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC----CCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP----EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR  357 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~----~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L  357 (405)
                      .++...+......-....+|+.|++++|+++.+|..++    ++|+.|+++ |.+.++|         ..+..+++ +.|
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp---------~~l~~L~~L~~L  781 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFP---------TQPLNSSQLKAF  781 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCC---------CGGGGCTTCCEE
T ss_pred             ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccc---------hhhhcCCCCCEE
Confidence            55544333221000001168888888888888876543    678888888 8888876         56778888 888


Q ss_pred             EecC------CCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210        358 RLEQ------NDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK  400 (405)
Q Consensus       358 ~L~~------N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~  400 (405)
                      +|++      |++....+..|.++++|+.|+|++|++..+|...+..|+
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~  830 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLY  830 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSC
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCC
Confidence            8876      666666666788888888888888888888876444333

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.7e-25  Score=226.37  Aligned_cols=324  Identities=13%  Similarity=0.113  Sum_probs=208.3

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCc-ccc-cchhhHHHHHHhhCCCccccccccCCCcccCCcccccCC--Cc
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENS-FIC-DCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPE--HE   77 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~--~~   77 (405)
                      .|+|++|++.+..|..|+++++|++|++++|+ ++| ..+..+..     +.. .......+.+++++|.+..++.  ..
T Consensus       253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-----L~~-~~~l~~L~~L~L~~n~l~~ip~~~~l  326 (636)
T 4eco_A          253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-----LAD-APVGEKIQIIYIGYNNLKTFPVETSL  326 (636)
T ss_dssp             EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-----HHH-SGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred             EEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-----hhc-cccCCCCCEEECCCCcCCccCchhhh
Confidence            68999999998888889999999999999998 875 33322211     100 0001224556777888877775  22


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCccc-cCceEEcCCCCccccCCCCC--CC-ccEEEccCCCCCCCCcccccCCC--CCc
Q psy12210         78 FKCSGPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKGLNKVPILLP--EA-TTELRLEQNDITELPPKAFANYK--RLR  151 (405)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~p~~~~c-~~~~l~~~~n~l~~lp~~~~--~~-L~~L~L~~n~i~~l~~~~~~~l~--~L~  151 (405)
                      .....+....+..+.....-|....+ .++.+++++|.++.+|..+.  ++ |+.|++++|.++.++. .+..+.  +|+
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~  405 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMS  405 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEE
T ss_pred             ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch-hhhhcccCccC
Confidence            22223333334443333122233333 23777777777777776553  34 7777777777776664 344443  677


Q ss_pred             EEecCCCcceeecccccC-------CCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhc
Q psy12210        152 RIDLSKNQISKVAVDAFQ-------GLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY  224 (405)
Q Consensus       152 ~L~ls~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~  224 (405)
                      .|++++|.+....|..+.       .+++|++|++++|.++.++...|..+++|+.|++++|.+.               
T Consensus       406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~---------------  470 (636)
T 4eco_A          406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT---------------  470 (636)
T ss_dssp             EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS---------------
T ss_pred             EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC---------------
Confidence            777777777776666666       6667777777777777777777777777777777777643               


Q ss_pred             CCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCC-CCCCCCCCccccC
Q psy12210        225 PRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECA-AEPSCPHPCRCAD  303 (405)
Q Consensus       225 ~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~l  303 (405)
                                           .++...+.....       ............++.+.++.++.... ....       +|
T Consensus       471 ---------------------~i~~~~~~~~~~-------~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~-------~L  515 (636)
T 4eco_A          471 ---------------------EIPKNSLKDENE-------NFKNTYLLTSIDLRFNKLTKLSDDFRATTLP-------YL  515 (636)
T ss_dssp             ---------------------BCCSSSSEETTE-------ECTTGGGCCEEECCSSCCCBCCGGGSTTTCT-------TC
T ss_pred             ---------------------CcCHHHhccccc-------cccccCCccEEECcCCcCCccChhhhhccCC-------Cc
Confidence                                 233222211100       00000122223344444443332221 1222       69


Q ss_pred             ceeecCCCCCCcCCCCC--CCCceEEEEE-------ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCccccc
Q psy12210        304 GIVDCREKGLNKVPILL--PEATTELTYM-------VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFA  373 (405)
Q Consensus       304 ~~l~l~~n~l~~~p~~~--~~~l~~L~l~-------n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~  373 (405)
                      +.|++++|+++.+|..+  .+.|+.|+++       |++.+..        +..+..+++ +.|+|++|+|..+|.. +.
T Consensus       516 ~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~  586 (636)
T 4eco_A          516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW--------PEGITLCPSLTQLQIGSNDIRKVNEK-IT  586 (636)
T ss_dssp             CEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCC--------CTTGGGCSSCCEEECCSSCCCBCCSC-CC
T ss_pred             CEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccC--------hHHHhcCCCCCEEECCCCcCCccCHh-Hh
Confidence            99999999999988765  3799999994       4444443        578999999 9999999999999876 33


Q ss_pred             CCccCceeecccCCCcccCh
Q psy12210        374 NYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       374 ~l~~L~~L~L~~N~l~~i~~  393 (405)
                        ++|+.|+|++|++..+..
T Consensus       587 --~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          587 --PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             --TTCCEEECCSCTTCEEEC
T ss_pred             --CcCCEEECcCCCCccccH
Confidence              899999999999887763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=4.7e-25  Score=199.47  Aligned_cols=204  Identities=28%  Similarity=0.510  Sum_probs=180.9

Q ss_pred             CCCccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210         98 PHPCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT  175 (405)
Q Consensus        98 p~~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  175 (405)
                      +..|.|..  +.++|++++++++|..++..++.|++++|.++.+++..|.++++|++|++++|.++.+++..|.++++|+
T Consensus         9 ~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A            9 GGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            35688854  8999999999999999999999999999999999998899999999999999999999988889999999


Q ss_pred             EEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCccccc
Q psy12210        176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS  255 (405)
Q Consensus       176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  255 (405)
                      +|++++|.++.+++..|..+++|+.|++++|.+.                                    .++...|...
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------~~~~~~~~~l  132 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK------------------------------------SLPPRVFDSL  132 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC------------------------------------CCCTTTTTTC
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccC------------------------------------eeCHHHhCcC
Confidence            9999999999999999999999999999998754                                    2222222111


Q ss_pred             CccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-e
Q psy12210        256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-V  331 (405)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n  331 (405)
                                                                   .+|++|++++|.++.+|...   .++|++|+++ |
T Consensus       133 ---------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          133 ---------------------------------------------TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             ---------------------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ---------------------------------------------cCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence                                                         16999999999999998764   3689999999 9


Q ss_pred             cceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210        332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       332 ~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~  390 (405)
                      ++..++        +..|.++++ +.|+|++|+|+.+++..|..+++|+.|+|++|.+..
T Consensus       168 ~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          168 QLKRVP--------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCSCCC--------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCcEeC--------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            999998        778999999 999999999999999999999999999999998754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=222.43  Aligned_cols=172  Identities=22%  Similarity=0.272  Sum_probs=127.6

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|.++++|++|++++|.+++..            +.........+.+++++|.+..++...|...
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE------------DGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCCccC------------cccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            5889999999998888999999999999999886321            1111122334556777777777776555332


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCC-cccccCCCCCcEEecCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELP-PKAFANYKRLRRIDLSK  157 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~  157 (405)
                      ..                     ++++++++|+++.+|.. +  .++|++|++++|.++.+. +..|+++++|+.|++++
T Consensus       100 ~~---------------------L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~  158 (570)
T 2z63_A          100 SS---------------------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS  158 (570)
T ss_dssp             TT---------------------CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT
T ss_pred             cc---------------------cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC
Confidence            21                     38888888888887752 2  367888888888888753 45688888888888888


Q ss_pred             CcceeecccccCCCCCC----CEEEccCCcCcccChhhhhcccCCcEEEeecCc
Q psy12210        158 NQISKVAVDAFQGLKSL----TSLTLNNNNLTYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       158 n~l~~~~~~~~~~l~~L----~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      |.++.+.+..+..+++|    +.+++++|.+..+++++|... +|+.+++++|.
T Consensus       159 n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~  211 (570)
T 2z63_A          159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF  211 (570)
T ss_dssp             SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred             CccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence            88888877777777777    788888888888888777755 78888888774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-25  Score=224.56  Aligned_cols=268  Identities=18%  Similarity=0.228  Sum_probs=192.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|.+..+|+..|+++++|+.|++++|.++                                    .++...|...
T Consensus        55 ~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------------------------------------~~~~~~~~~l   98 (597)
T 3oja_B           55 IVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------------------------------------EIDTYAFAYA   98 (597)
T ss_dssp             EEEESSCEESEECTHHHHHCCCCSEEECTTSCCC------------------------------------EECTTTTTTC
T ss_pred             EEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------------------------------------CCChHHhcCC
Confidence            3566777777777777777777777777777765                                    2332222111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|.++.+|...   .++|+.|++++|.++.+++..|.++++|+.|++++|
T Consensus        99 ~---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B           99 H---------------------TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN  157 (597)
T ss_dssp             T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             C---------------------CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC
Confidence            1                     1277888888887777543   367888888888888888877888888888888888


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH  238 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (405)
                      .++.+++..|.++++|+.|++++|.++.++.   ..+++|+.+++++|.+....                 ....+....
T Consensus       158 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~~l~-----------------~~~~L~~L~  217 (597)
T 3oja_B          158 NLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLSTLA-----------------IPIAVEELD  217 (597)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCSEEE-----------------CCTTCSEEE
T ss_pred             cCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCcccccc-----------------CCchhheee
Confidence            8888888888888888888888888888763   45778888888888754100                 000011111


Q ss_pred             CCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC
Q psy12210        239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI  318 (405)
Q Consensus       239 l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~  318 (405)
                      +.++.+                                      ..+.+...          .+|+.|++++|.++..+.
T Consensus       218 ls~n~l--------------------------------------~~~~~~~~----------~~L~~L~L~~n~l~~~~~  249 (597)
T 3oja_B          218 ASHNSI--------------------------------------NVVRGPVN----------VELTILKLQHNNLTDTAW  249 (597)
T ss_dssp             CCSSCC--------------------------------------CEEECSCC----------SCCCEEECCSSCCCCCGG
T ss_pred             ccCCcc--------------------------------------cccccccC----------CCCCEEECCCCCCCCChh
Confidence            222222                                      11111110          259999999999998642


Q ss_pred             -CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhh
Q psy12210        319 -LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA  395 (405)
Q Consensus       319 -~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~  395 (405)
                       ...++|+.|+++ |.+.+++        +..|.++++ +.|+|++|+++.++.. +..+++|+.|+|++|.+++++.. 
T Consensus       250 l~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~-  319 (597)
T 3oja_B          250 LLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERN-  319 (597)
T ss_dssp             GGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGG-
T ss_pred             hccCCCCCEEECCCCccCCCC--------HHHhcCccCCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCCCCccCcc-
Confidence             225799999999 9999998        789999999 9999999999999764 67799999999999999998865 


Q ss_pred             cCCCccccC
Q psy12210        396 FANYKRLRR  404 (405)
Q Consensus       396 f~~l~~L~~  404 (405)
                      +..+++|++
T Consensus       320 ~~~l~~L~~  328 (597)
T 3oja_B          320 QPQFDRLEN  328 (597)
T ss_dssp             HHHHTTCSE
T ss_pred             cccCCCCCE
Confidence            455555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=9.6e-25  Score=227.83  Aligned_cols=254  Identities=17%  Similarity=0.208  Sum_probs=180.0

Q ss_pred             cCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEcc
Q psy12210        104 ADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLN  180 (405)
Q Consensus       104 ~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~  180 (405)
                      ..+.+++++|.++.++...   .++++.|++++|.++.+++..|.++++|+.|++++|.++.+.+..|.++++|+.|+++
T Consensus       267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred             CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence            4588888888887776433   2578888888888888887778888888888888888888877888888888888888


Q ss_pred             CCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccc
Q psy12210        181 NNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSME  260 (405)
Q Consensus       181 ~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~  260 (405)
                      +|.++.+++..|..+++|+.|++++|.+.....                 ...+....+.++.+..++....        
T Consensus       347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----------------~~~L~~L~l~~N~l~~l~~~~~--------  401 (844)
T 3j0a_A          347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----------------IPSIPDIFLSGNKLVTLPKINL--------  401 (844)
T ss_dssp             SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-----------------CCSCSEEEEESCCCCCCCCCCT--------
T ss_pred             CCCCCccChhhhcCCCCCCEEECCCCCCCcccC-----------------CCCcchhccCCCCccccccccc--------
Confidence            888888888888888888888888887652100                 1112222333333333322110        


Q ss_pred             ccccceecccccCCCCCCCCCCCCCCCCCC-CCCCCCCCccccCceeecCCCCCCcCCCC----CCCCceEEEEE-ecce
Q psy12210        261 TRSKIYREECSTDFHPYNSCPVEKPTGECA-AEPSCPHPCRCADGIVDCREKGLNKVPIL----LPEATTELTYM-VSID  334 (405)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~l~~l~l~~n~l~~~p~~----~~~~l~~L~l~-n~i~  334 (405)
                                ......++.+++..+....+ ...       .+|+.|++++|+++.++..    ..++++.|+++ |.+.
T Consensus       402 ----------~l~~L~ls~N~l~~l~~~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~  464 (844)
T 3j0a_A          402 ----------TANLIHLSENRLENLDILYFLLRV-------PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ  464 (844)
T ss_dssp             ----------TCCEEECCSCCCCSSTTHHHHTTC-------TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred             ----------ccceeecccCccccCchhhhhhcC-------CccceeeCCCCcccccccccccccCCccccccCCCCccc
Confidence                      11122344444444322111 111       2699999999999976543    23689999999 9987


Q ss_pred             eeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        335 RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       335 ~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      .++..+   ..+..|.++++ +.|+|++|+|+.+++..|.++++|+.|+|++|+|+++++..|.  ++|++
T Consensus       465 ~~~~~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~  530 (844)
T 3j0a_A          465 LAWETE---LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI  530 (844)
T ss_dssp             SSCCSC---CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred             cccccc---cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence            543111   11467889999 9999999999999999999999999999999999999987665  45543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=7.8e-25  Score=218.95  Aligned_cols=354  Identities=13%  Similarity=0.102  Sum_probs=201.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|+++++|++|++++|++++..+            .........+.++++++.+..++...+...
T Consensus        56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL------------GAFSGLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT------------TTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             EEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH------------hhhcCccccccccccccccccCCCcccccc
Confidence            68999999999999999999999999999999874211            112222335567788888887776444222


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccc--cCCCCC--CCccEEEccCCCCCCCCcccccCCCCC----cEE
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK--VPILLP--EATTELRLEQNDITELPPKAFANYKRL----RRI  153 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~--lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L----~~L  153 (405)
                      ..                     ++++++++|.++.  +|..+.  ++|+.|++++|.++.+++..++.+.+|    +.+
T Consensus       124 ~~---------------------L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          124 KT---------------------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             TT---------------------CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             cc---------------------ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            11                     2566666666654  344332  456666666666666555555555555    555


Q ss_pred             ecCCCcceeeccccc-----------------------------------------------------------------
Q psy12210        154 DLSKNQISKVAVDAF-----------------------------------------------------------------  168 (405)
Q Consensus       154 ~ls~n~l~~~~~~~~-----------------------------------------------------------------  168 (405)
                      ++++|.++.+.+..|                                                                 
T Consensus       183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  262 (570)
T 2z63_A          183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF  262 (570)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred             ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence            666655555544433                                                                 


Q ss_pred             ----------------CCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC--chHHHHH-HhhcC----
Q psy12210        169 ----------------QGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH--LSWLHRW-LKRYP----  225 (405)
Q Consensus       169 ----------------~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~--l~~~~~~-~~~~~----  225 (405)
                                      ..+++|+.|++++|.+..++.. +..+ +|+.|++++|.+.....  +..+... +....    
T Consensus       263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~  340 (570)
T 2z63_A          263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA  340 (570)
T ss_dssp             EEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC-CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCB
T ss_pred             hhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh-hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccc
Confidence                            3445555666666655555542 3334 55555555555431000  0000000 00000    


Q ss_pred             CCCCccccCCCCCCCCCcccccC--CCcccccC-cc--------ccccccceecccccCCCCCCCCCCCCCCC-CCCCCC
Q psy12210        226 RLGLYTKCFAPSHIKGQNILDIP--EHEFKCSG-SS--------METRSKIYREECSTDFHPYNSCPVEKPTG-ECAAEP  293 (405)
Q Consensus       226 ~~~~~~~~~~~~~l~~~~l~~l~--~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~  293 (405)
                      ........+....+.++.+..+.  ...+...+ ..        .......+..........++.+.+..... ..+...
T Consensus       341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  420 (570)
T 2z63_A          341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  420 (570)
T ss_dssp             CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred             cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcC
Confidence            00001111112222222222211  00000000 00        00000002222223333344444433322 122222


Q ss_pred             CCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-eccee-eeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210        294 SCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDR-VDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL  367 (405)
Q Consensus       294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~-i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i  367 (405)
                             .+|++|++++|.++..+...   .++++.|+++ |.+.+ ..        +..+..+++ +.|++++|+++.+
T Consensus       421 -------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------p~~~~~l~~L~~L~l~~n~l~~~  485 (570)
T 2z63_A          421 -------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--------PDIFTELRNLTFLDLSQCQLEQL  485 (570)
T ss_dssp             -------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--------CSCCTTCTTCCEEECTTSCCCEE
T ss_pred             -------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc--------hhhhhcccCCCEEECCCCccccC
Confidence                   27889999999888765443   3688999999 88862 22        378899999 9999999999999


Q ss_pred             CcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        368 PPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       368 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      .+..|.++++|+.|+|++|+++++++..|.++++|++|
T Consensus       486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            88889999999999999999999998889888888754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=210.20  Aligned_cols=115  Identities=30%  Similarity=0.399  Sum_probs=103.1

Q ss_pred             CCCCCCccccC-ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210         95 PSCPHPCRCAD-GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS  173 (405)
Q Consensus        95 ~~~p~~~~c~~-~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  173 (405)
                      ..|+..|.|.. .++++++++++++|..++++++.|++++|.++.+++..|.++++|+.|++++|.++.+.+..|.++++
T Consensus        22 ~~~~~~~~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           22 SSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             -----CCEECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCccCCCCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            34566677754 56899999999999999999999999999999999888999999999999999999999889999999


Q ss_pred             CCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      |++|++++|.++.+++.+|..+++|+.|++++|.+.
T Consensus       102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  137 (353)
T 2z80_A          102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK  137 (353)
T ss_dssp             CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS
T ss_pred             CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc
Confidence            999999999999999988999999999999999865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=5.5e-25  Score=227.28  Aligned_cols=333  Identities=14%  Similarity=0.139  Sum_probs=197.2

Q ss_pred             ccccCCCcCcc------------------CCchh-hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCC
Q psy12210          2 PRTLNNNNLTY------------------LPDGV-FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP   62 (405)
Q Consensus         2 ~L~l~~n~i~~------------------l~~~~-f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   62 (405)
                      .|+|++|+|++                  +|+.. |.++++|+.|+|++|.+.+..+            ........+..
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP------------~~l~~L~~L~~  519 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP------------DFLYDLPELQS  519 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC------------GGGGGCSSCCE
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh------------HHHhCCCCCCE
Confidence            57888999988                  66542 3389999999999988775333            11111222445


Q ss_pred             CcccCCc-ccc--cCCCccccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC--CC--CCCccEEEccCCC
Q psy12210         63 SHIKGQN-ILD--IPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI--LL--PEATTELRLEQND  135 (405)
Q Consensus        63 ~~l~~~~-l~~--l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~--~~--~~~L~~L~L~~n~  135 (405)
                      +++++|. +..  +|.......+.    ...           -..++.+++++|.++.+|.  .+  .++|+.|++++|.
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~----~~~-----------l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADD----EDT-----------GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHC----TTT-----------TTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC
T ss_pred             EECcCCCCcccccchHHHHhhhhc----ccc-----------cCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC
Confidence            5666665 543  43322111000    000           0013677777777777766  33  2467777777777


Q ss_pred             CCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC-CCEEEccCCcCcccChhhhhcccC--CcEEEeecCcccccc
Q psy12210        136 ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS-LTSLTLNNNNLTYLPDGVFAELFR--LRTLRISENSFICDC  212 (405)
Q Consensus       136 i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~l~~~~f~~l~~--L~~L~l~~N~l~~~~  212 (405)
                      ++.++  .|.++++|+.|++++|.+..++ ..+..+++ |+.|++++|.++.++. .+..+..  |+.|++++|.+...-
T Consensus       585 l~~lp--~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~i  660 (876)
T 4ecn_A          585 VRHLE--AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEG  660 (876)
T ss_dssp             CCBCC--CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTS
T ss_pred             cccch--hhcCCCcceEEECcCCccccch-HHHhhccccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCcc
Confidence            77665  4667777777777777776443 44666666 7777777777776653 3444433  677777776654210


Q ss_pred             -----Cc------------------hHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecc
Q psy12210        213 -----HL------------------SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREE  269 (405)
Q Consensus       213 -----~l------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  269 (405)
                           .+                  ..++....      .....+..+.+.++.+..++...+.....       .....
T Consensus       661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~------~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~-------~l~nl  727 (876)
T 4ecn_A          661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELF------ATGSPISTIILSNNLMTSIPENSLKPKDG-------NYKNT  727 (876)
T ss_dssp             SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH------HTTCCCSEEECCSCCCSCCCTTSSSCTTS-------CCTTG
T ss_pred             ccchhhhccccCCCcCEEEccCCcCCccCHHHH------ccCCCCCEEECCCCcCCccChHHhccccc-------ccccc
Confidence                 00                  00000000      00112223334444444444433321100       00111


Q ss_pred             cccCCCCCCCCCCCCCCCCCC-CCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-ec------ceeeecc
Q psy12210        270 CSTDFHPYNSCPVEKPTGECA-AEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-VS------IDRVDKV  339 (405)
Q Consensus       270 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~------i~~i~~~  339 (405)
                      .......++.+.++.++.... ..+       .+|+.|++++|.++.+|..+  .++|+.|+++ |+      +.+..  
T Consensus       728 ~~L~~L~Ls~N~L~~lp~~l~~~~l-------~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i--  798 (876)
T 4ecn_A          728 YLLTTIDLRFNKLTSLSDDFRATTL-------PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW--  798 (876)
T ss_dssp             GGCCEEECCSSCCCCCCGGGSTTTC-------TTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCC--
T ss_pred             CCccEEECCCCCCccchHHhhhccC-------CCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccC--
Confidence            144455677777775543322 123       37999999999999998665  4789999996 54      33333  


Q ss_pred             chhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhc
Q psy12210        340 LLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAF  396 (405)
Q Consensus       340 ~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f  396 (405)
                            +..|..+++ +.|+|++|+|..+|.. +.  ++|+.|+|++|++..+....|
T Consensus       799 ------p~~l~~L~~L~~L~Ls~N~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          799 ------PTGITTCPSLIQLQIGSNDIRKVDEK-LT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             ------CTTGGGCSSCCEEECCSSCCCBCCSC-CC--SSSCEEECCSCTTCEEECGGG
T ss_pred             ------hHHHhcCCCCCEEECCCCCCCccCHh-hc--CCCCEEECCCCCCCccChHHc
Confidence                  578999999 9999999999999876 33  699999999999998875544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.92  E-value=3.8e-25  Score=218.86  Aligned_cols=331  Identities=12%  Similarity=0.103  Sum_probs=184.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|.++++|++|++++|++++..+            .........+.+++++|.++.++...  ..
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~Ls~N~l~~lp~~~--l~   90 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI------------SVFKFNQELEYLDLSHNKLVKISCHP--TV   90 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG------------GGGTTCTTCCEEECCSSCCCEEECCC--CC
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCCcCh------------HHhhcccCCCEEecCCCceeecCccc--cC
Confidence            57778888888777778888888888888887764221            11111223455677777777766541  11


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcccc--CCCC--CCCccEEEccCCCCCCCCcccccCCCCC--cEEec
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV--PILL--PEATTELRLEQNDITELPPKAFANYKRL--RRIDL  155 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~l--p~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L--~~L~l  155 (405)
                                            .++++++++|.++.+  |..+  .++|++|++++|.++.   ..+..+++|  +.|++
T Consensus        91 ----------------------~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           91 ----------------------NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             ----------------------CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred             ----------------------CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence                                  126777777777653  3333  2566777777776654   234455555  66666


Q ss_pred             CCCcc--eeecccccCCC--------------------------------------------------------------
Q psy12210        156 SKNQI--SKVAVDAFQGL--------------------------------------------------------------  171 (405)
Q Consensus       156 s~n~l--~~~~~~~~~~l--------------------------------------------------------------  171 (405)
                      ++|.+  ....|..+..+                                                              
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L  225 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL  225 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred             ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence            66655  33333333321                                                              


Q ss_pred             ---------------------CCCCEEEccCCcCc-ccChhhh----hcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210        172 ---------------------KSLTSLTLNNNNLT-YLPDGVF----AELFRLRTLRISENSFICDCHLSWLHRWLKRYP  225 (405)
Q Consensus       172 ---------------------~~L~~L~l~~n~l~-~l~~~~f----~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~  225 (405)
                                           ++|++|++++|.++ .++...|    ..+++|+.+++++|.+.  ....++..+.....
T Consensus       226 ~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~--~p~~~~~~~~~~~~  303 (520)
T 2z7x_B          226 TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMN  303 (520)
T ss_dssp             EEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC--SCTHHHHHHHHTCC
T ss_pred             cccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccccee--cchhhhhcccccCc
Confidence                                 26777777777777 5554332    67778888888887762  11122322221111


Q ss_pred             CCC--------------CccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCC--CC
Q psy12210        226 RLG--------------LYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTG--EC  289 (405)
Q Consensus       226 ~~~--------------~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~  289 (405)
                      ...              .....+....+.++.+.+.....+              ..........++.+.+..++.  ..
T Consensus       304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------~~l~~L~~L~L~~N~l~~l~~~~~~  369 (520)
T 2z7x_B          304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC--------------GHLTELETLILQMNQLKELSKIAEM  369 (520)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC--------------CCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred             eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhh--------------ccCCCCCEEEccCCccCccccchHH
Confidence            110              111122223333333333222211              112222333344444443211  11


Q ss_pred             CCCCCCCCCccccCceeecCCCCCCc-CCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCC
Q psy12210        290 AAEPSCPHPCRCADGIVDCREKGLNK-VPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQND  363 (405)
Q Consensus       290 ~~~~~~~~~~~~~l~~l~l~~n~l~~-~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~  363 (405)
                      +....       +|++|++++|.++. +|...   .+.+++|+++ |++.+..        +..+.  ++ +.|+|++|+
T Consensus       370 ~~~l~-------~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~l~--~~L~~L~Ls~N~  432 (520)
T 2z7x_B          370 TTQMK-------SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--------FRCLP--PRIKVLDLHSNK  432 (520)
T ss_dssp             HTTCT-------TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG--------GGSCC--TTCCEEECCSSC
T ss_pred             HhhCC-------CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcch--------hhhhc--ccCCEEECCCCc
Confidence            12222       57777777777776 66442   2567777777 7765433        22222  56 888888888


Q ss_pred             CcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        364 ITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       364 i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      |+.++...+ .+++|+.|+|++|++++++...|.++++|++|
T Consensus       433 l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          433 IKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence            887776644 67888888888888888887667777777653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=9.7e-25  Score=198.06  Aligned_cols=226  Identities=21%  Similarity=0.255  Sum_probs=156.3

Q ss_pred             CccccC--ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEE
Q psy12210        100 PCRCAD--GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL  177 (405)
Q Consensus       100 ~~~c~~--~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  177 (405)
                      .|.|..  ..++|.+.+++++|..+++++++|++++|.++.+++..|.++++|++|++++|.++.+++..|.++++|++|
T Consensus         2 ~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   81 (276)
T 2z62_A            2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (276)
T ss_dssp             CSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEE
Confidence            355543  589999999999999999999999999999999998889999999999999999999998899999999999


Q ss_pred             EccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCc
Q psy12210        178 TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGS  257 (405)
Q Consensus       178 ~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~  257 (405)
                      ++++|.++.++++.|..+++|+.|++++|.+...            ..........+....+.++.+..+..        
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~l--------  141 (276)
T 2z62_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL------------ENFPIGHLKTLKELNVAHNLIQSFKL--------  141 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS------------TTCCCTTCTTCCEEECCSSCCCCCCC--------
T ss_pred             ECCCCccCccChhhhcCCccccEEECCCCCcccc------------CchhcccCCCCCEEECcCCccceecC--------
Confidence            9999999999988999999999999999986510            00001111111112222222221110        


Q ss_pred             cccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCce----EEEEE
Q psy12210        258 SMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATT----ELTYM  330 (405)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~----~L~l~  330 (405)
                                                   ...+..+       .+|++|++++|+++.++...+   +.++    .|+++
T Consensus       142 -----------------------------~~~~~~l-------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          142 -----------------------------PEYFSNL-------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             -----------------------------CGGGGGC-------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             -----------------------------chhhccC-------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence                                         0011111       146667777776666654332   2222    56666


Q ss_pred             -ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210        331 -VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       331 -n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~  390 (405)
                       |.+..++        +..+... + +.|+|++|+|+.+++..|.++++|+.|+|++|.++.
T Consensus       186 ~n~l~~~~--------~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          186 LNPMNFIQ--------PGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             SSCCCEEC--------TTSSCSC-CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCcccccC--------ccccCCC-cccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence             6666666        4444333 5 677777777777766666667777777777776653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.5e-24  Score=210.01  Aligned_cols=237  Identities=24%  Similarity=0.335  Sum_probs=190.4

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .++.++++++.+|...   .++++.|+|++|.+++                                    ++...|...
T Consensus        47 ~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~------------------------------------~~~~~~~~l   87 (440)
T 3zyj_A           47 KVICVRKNLREVPDGI---STNTRLLNLHENQIQI------------------------------------IKVNSFKHL   87 (440)
T ss_dssp             EEECCSCCCSSCCSCC---CTTCSEEECCSCCCCE------------------------------------ECTTTTSSC
T ss_pred             EEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCe------------------------------------eCHHHhhCC
Confidence            3567788899988753   3678999999998862                                    221222111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|.++.++.. +  .++|+.|++++|.++.+++..|..+++|++|++++|
T Consensus        88 ~---------------------~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A           88 R---------------------HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             S---------------------SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred             C---------------------CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence            0                     126777777777776632 2  268999999999999999888999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccC-CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNN-NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS  237 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (405)
                      .++.+++..|.++++|++|++++ +.+..+++..|..+++|+.|++++|.+.                            
T Consensus       147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----------------------------  198 (440)
T 3zyj_A          147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----------------------------  198 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----------------------------
T ss_pred             cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----------------------------
Confidence            99999988899999999999998 5688888888999999999999998754                            


Q ss_pred             CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210        238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP  317 (405)
Q Consensus       238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p  317 (405)
                              .++.  +...                                             .+|+.|++++|.++.++
T Consensus       199 --------~~~~--~~~l---------------------------------------------~~L~~L~Ls~N~l~~~~  223 (440)
T 3zyj_A          199 --------EIPN--LTPL---------------------------------------------IKLDELDLSGNHLSAIR  223 (440)
T ss_dssp             --------SCCC--CTTC---------------------------------------------SSCCEEECTTSCCCEEC
T ss_pred             --------cccc--cCCC---------------------------------------------cccCEEECCCCccCccC
Confidence                    1111  1000                                             15999999999999986


Q ss_pred             CCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc
Q psy12210        318 ILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT  389 (405)
Q Consensus       318 ~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~  389 (405)
                      ...+   ++|+.|+++ |++..++        +..|.++++ +.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus       224 ~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          224 PGSFQGLMHLQKLWMIQSQIQVIE--------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCEEC--------TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             hhhhccCccCCEEECCCCceeEEC--------hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            5543   689999999 9999998        889999999 99999999999999999999999999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=1.3e-24  Score=207.21  Aligned_cols=143  Identities=20%  Similarity=0.266  Sum_probs=119.1

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|+++++|++|++++|.+++                                    ++...+...
T Consensus        73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------------~~~~~~~~l  116 (390)
T 3o6n_A           73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------------------------------LPPHVFQNV  116 (390)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred             EEECCCCcccccChhhccCCCCcCEEECCCCCCCc------------------------------------CCHHHhcCC
Confidence            68999999999999999999999999999999862                                    221111111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|.++.+|...   .++|++|++++|.++.+++..|.++++|++|++++|
T Consensus       117 ~---------------------~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          117 P---------------------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             C---------------------CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            0                     1288999999999998764   368999999999999999988999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      .++.++   +..+++|+.|++++|.++.++     ..++|+.|++++|.+.
T Consensus       176 ~l~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          176 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSIN  218 (390)
T ss_dssp             CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCC
T ss_pred             cCCccc---cccccccceeecccccccccC-----CCCcceEEECCCCeee
Confidence            999875   556789999999999988764     3468999999999876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=5.2e-24  Score=199.72  Aligned_cols=286  Identities=14%  Similarity=0.110  Sum_probs=173.1

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|+++.++.  |..+++|++|++++|.+++..+              .......+.++++++.+.+++.  +...
T Consensus        48 ~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~--------------~~~l~~L~~L~L~~n~i~~~~~--~~~l  109 (347)
T 4fmz_A           48 KLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--------------LSNLVKLTNLYIGTNKITDISA--LQNL  109 (347)
T ss_dssp             EEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--------------GTTCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             EEEEeCCccccchh--hhhcCCccEEEccCCccccchh--------------hhcCCcCCEEEccCCcccCchH--HcCC
Confidence            46777788877754  6778888888888887763211              0111123344555555554431  1111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcc
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI  160 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l  160 (405)
                      .                     .++.+++++|.++.+|. .-.++++.|++++|......+ .+..+++|+.|++++|.+
T Consensus       110 ~---------------------~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~  167 (347)
T 4fmz_A          110 T---------------------NLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKV  167 (347)
T ss_dssp             T---------------------TCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             C---------------------cCCEEECcCCcccCchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCc
Confidence            0                     12666666666666554 112466666666664333332 256666666666666666


Q ss_pred             eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210        161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK  240 (405)
Q Consensus       161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (405)
                      ..+.+  +..+++|+.|++++|.+..++.  +..+++|+.+++++|.+.....              ......+...   
T Consensus       168 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--------------~~~~~~L~~L---  226 (347)
T 4fmz_A          168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--------------VANMTRLNSL---  226 (347)
T ss_dssp             CCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------GGGCTTCCEE---
T ss_pred             CCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--------------hhcCCcCCEE---
Confidence            65543  5566666666666666666654  5566666666666665431000              0001111111   


Q ss_pred             CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-C
Q psy12210        241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-L  319 (405)
Q Consensus       241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~  319 (405)
                                                         .++.+.+.....  +...       .+++.|++++|.++.++. .
T Consensus       227 -----------------------------------~l~~n~l~~~~~--~~~l-------~~L~~L~l~~n~l~~~~~~~  262 (347)
T 4fmz_A          227 -----------------------------------KIGNNKITDLSP--LANL-------SQLTWLEIGTNQISDINAVK  262 (347)
T ss_dssp             -----------------------------------ECCSSCCCCCGG--GTTC-------TTCCEEECCSSCCCCCGGGT
T ss_pred             -----------------------------------EccCCccCCCcc--hhcC-------CCCCEEECCCCccCCChhHh
Confidence                                               222222222221  1111       268899999998888753 2


Q ss_pred             CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcC
Q psy12210        320 LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFA  397 (405)
Q Consensus       320 ~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~  397 (405)
                      ..+++++|+++ |.+.+++          .+..+++ +.|++++|+++.+++..|.++++|+.|+|++|+++++++  +.
T Consensus       263 ~l~~L~~L~l~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  330 (347)
T 4fmz_A          263 DLTKLKMLNVGSNQISDIS----------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA  330 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCG----------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred             cCCCcCEEEccCCccCCCh----------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence            34788999999 8888875          4778888 999999999998888888889999999999999988876  55


Q ss_pred             CCccccC
Q psy12210        398 NYKRLRR  404 (405)
Q Consensus       398 ~l~~L~~  404 (405)
                      .+++|++
T Consensus       331 ~l~~L~~  337 (347)
T 4fmz_A          331 SLSKMDS  337 (347)
T ss_dssp             GCTTCSE
T ss_pred             hhhccce
Confidence            6666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=1.8e-24  Score=210.19  Aligned_cols=236  Identities=21%  Similarity=0.330  Sum_probs=190.2

Q ss_pred             cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCC
Q psy12210          3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG   82 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~   82 (405)
                      ++.++++++.+|...   .++++.|+|++|.|++                                    +....|....
T Consensus        59 v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~------------------------------------~~~~~~~~l~   99 (452)
T 3zyi_A           59 VVCTRRGLSEVPQGI---PSNTRYLNLMENNIQM------------------------------------IQADTFRHLH   99 (452)
T ss_dssp             EECCSSCCSSCCSCC---CTTCSEEECCSSCCCE------------------------------------ECTTTTTTCT
T ss_pred             EEECCCCcCccCCCC---CCCccEEECcCCcCce------------------------------------ECHHHcCCCC
Confidence            567788888888742   3688999999998862                                    2112221111


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc
Q psy12210         83 PVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ  159 (405)
Q Consensus        83 ~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~  159 (405)
                                           .++.+++++|.++.++.. +  .++|+.|++++|.++.+++..|..+++|++|++++|.
T Consensus       100 ---------------------~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  158 (452)
T 3zyi_A          100 ---------------------HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP  158 (452)
T ss_dssp             ---------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC
T ss_pred             ---------------------CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC
Confidence                                 127777888887777643 2  2689999999999999998889999999999999999


Q ss_pred             ceeecccccCCCCCCCEEEccC-CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210        160 ISKVAVDAFQGLKSLTSLTLNN-NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH  238 (405)
Q Consensus       160 l~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (405)
                      ++.+++..|..+++|++|++++ +.+..++...|..+++|+.|++++|.+.                             
T Consensus       159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-----------------------------  209 (452)
T 3zyi_A          159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-----------------------------  209 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-----------------------------
T ss_pred             cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-----------------------------
Confidence            9999988899999999999998 5688999888999999999999998754                             


Q ss_pred             CCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC
Q psy12210        239 IKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI  318 (405)
Q Consensus       239 l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~  318 (405)
                             .++.  +...                                             .+|+.|++++|.++.++.
T Consensus       210 -------~~~~--~~~l---------------------------------------------~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          210 -------DMPN--LTPL---------------------------------------------VGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             -------SCCC--CTTC---------------------------------------------TTCCEEECTTSCCSEECG
T ss_pred             -------cccc--cccc---------------------------------------------ccccEEECcCCcCcccCc
Confidence                   1110  1000                                             159999999999998865


Q ss_pred             CC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc
Q psy12210        319 LL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT  389 (405)
Q Consensus       319 ~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~  389 (405)
                      ..   .++|+.|+++ |++..++        +..|.++++ +.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIE--------RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccccCccCCCEEEeCCCcCceEC--------HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            43   3689999999 9999998        788999999 99999999999999999999999999999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=9.5e-25  Score=218.02  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             CccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCC
Q psy12210          1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH   76 (405)
Q Consensus         1 ~~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~   76 (405)
                      ..|+|++|+|+++++.+|+++++|++|++++|++++..+            .........+.+++++|.++.++..
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------~~~~~l~~L~~L~Ls~N~l~~lp~~  118 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF------------HVFLFNQDLEYLDVSHNRLQNISCC  118 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECT------------TTTTTCTTCCEEECTTSCCCEECSC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCH------------HHhCCCCCCCEEECCCCcCCccCcc
Confidence            368999999999999999999999999999999974221            2122223356678888888888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.91  E-value=2.5e-24  Score=212.93  Aligned_cols=153  Identities=18%  Similarity=0.126  Sum_probs=117.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      +||+++|+|+.+|...+   ++|++|++++|.+++..+.     .+..       ....+.+++++|.+..+....|...
T Consensus         4 ~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~-----~~~~-------l~~L~~L~Ls~n~l~~~~~~~~~~l   68 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTS-----DILS-------LSKLRILIISHNRIQYLDISVFKFN   68 (520)
T ss_dssp             EEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHH-----HHTT-------CTTCCEEECCSSCCCEEEGGGGTTC
T ss_pred             eEecCCCCccccccccc---ccccEEECCCCcccccChh-----hccc-------cccccEEecCCCccCCcChHHhhcc
Confidence            68999999999997543   8999999999999753221     1111       1224567888999988866555433


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCC-cccccCCCCCcEEecCCCcc
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQI  160 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~n~l  160 (405)
                      ..                     ++++++++|.++.+|..-.++|++|++++|.++.++ +..|+++++|++|++++|.+
T Consensus        69 ~~---------------------L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           69 QE---------------------LEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             TT---------------------CCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             cC---------------------CCEEecCCCceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence            22                     399999999999999875679999999999999864 46799999999999999998


Q ss_pred             eeecccccCCCCCC--CEEEccCCcC--cccChhhhh
Q psy12210        161 SKVAVDAFQGLKSL--TSLTLNNNNL--TYLPDGVFA  193 (405)
Q Consensus       161 ~~~~~~~~~~l~~L--~~L~l~~n~l--~~l~~~~f~  193 (405)
                      +.   ..+..+++|  +.|++++|.+  ....+..+.
T Consensus       128 ~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~  161 (520)
T 2z7x_B          128 EK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ  161 (520)
T ss_dssp             CG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred             ch---hhccccccceeeEEEeeccccccccccccccc
Confidence            76   346777788  9999999988  444333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=5.2e-24  Score=214.06  Aligned_cols=143  Identities=20%  Similarity=0.266  Sum_probs=119.5

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|+++++|+.|+|++|.+++                                    ++...|...
T Consensus        79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------------------------~~~~~~~~l  122 (597)
T 3oja_B           79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------------------------------LPPHVFQNV  122 (597)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred             EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC------------------------------------CCHHHHcCC
Confidence            68999999999999999999999999999999862                                    222222111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|.++.+|...   .++|++|++++|.++.+++..|.++++|+.|++++|
T Consensus       123 ~---------------------~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          123 P---------------------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred             C---------------------CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence            1                     1388999999999998764   368999999999999999988999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      .++.++   +..+++|+.|++++|.++.++     ..++|+.|++++|.+.
T Consensus       182 ~l~~~~---~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          182 RLTHVD---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSIN  224 (597)
T ss_dssp             CCSBCC---GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCC
T ss_pred             CCCCcC---hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccc
Confidence            999875   456789999999999988764     3568999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=6.2e-24  Score=190.00  Aligned_cols=115  Identities=32%  Similarity=0.585  Sum_probs=106.2

Q ss_pred             CCCCCC--cccc--CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCC
Q psy12210         95 PSCPHP--CRCA--DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQG  170 (405)
Q Consensus        95 ~~~p~~--~~c~--~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~  170 (405)
                      ..||.+  |+|.  .+.++|++++++++|..+++.++.|++++|.++.+++..|.++++|++|++++|.++.+.+..|.+
T Consensus         2 ~~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   81 (251)
T 3m19_A            2 KTCETVTGCTCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD   81 (251)
T ss_dssp             --CHHHHSSEEEGGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred             ccCCCCCceEcCCCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc
Confidence            468988  9993  489999999999999999999999999999999999988999999999999999999999888999


Q ss_pred             CCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        171 LKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       171 l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      +++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus        82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence            999999999999999999999999999999999998743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=2.5e-23  Score=210.43  Aligned_cols=113  Identities=29%  Similarity=0.436  Sum_probs=103.4

Q ss_pred             CCCCcccc--CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210         97 CPHPCRCA--DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL  174 (405)
Q Consensus        97 ~p~~~~c~--~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  174 (405)
                      ++..|.|.  ...++|++.+++++|..+|.++++|+|++|.|+.+++.+|.++++|+.|++++|.++.+++++|.++++|
T Consensus        23 ~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L  102 (635)
T 4g8a_A           23 SWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL  102 (635)
T ss_dssp             --CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCC
Confidence            34456553  4789999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ++|++++|+++.+++++|.++++|+.|++++|.+.
T Consensus       103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~  137 (635)
T 4g8a_A          103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA  137 (635)
T ss_dssp             CEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence            99999999999999999999999999999999876

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=3.1e-24  Score=201.77  Aligned_cols=270  Identities=16%  Similarity=0.208  Sum_probs=156.2

Q ss_pred             cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccCC
Q psy12210          3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG   82 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~   82 (405)
                      .++++++++.+|...   .++|+.|++++|.+++..+            .........+.+++++|.+..++...|....
T Consensus        36 c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           36 CKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISN------------SDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             EECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             eeCCCCCcccccccc---cccCcEEECCCCcCcccCH------------HHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            467888899988753   3578999999988863111            0011111123344444444444433332111


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCC
Q psy12210         83 PVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPP-KAFANYKRLRRIDLSKN  158 (405)
Q Consensus        83 ~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n  158 (405)
                      .                     ++++++++|.++.+|.. +  .++|++|++++|.++.++. ..|.++++|+.|++++|
T Consensus       101 ~---------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          101 S---------------------LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             T---------------------CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             C---------------------CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence            0                     15555555555555532 1  2355555555555555554 34555555555555555


Q ss_pred             -cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210        159 -QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS  237 (405)
Q Consensus       159 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (405)
                       .+..+++..|.++++|++|++++|.++.+.+..|..+++|+.|++++|.+.                            
T Consensus       160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~----------------------------  211 (353)
T 2z80_A          160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI----------------------------  211 (353)
T ss_dssp             SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST----------------------------
T ss_pred             ccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc----------------------------
Confidence             345554455555555555555555555554445555555555555555422                            


Q ss_pred             CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210        238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP  317 (405)
Q Consensus       238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p  317 (405)
                              .++...+...                                             .+++.|++++|.++.++
T Consensus       212 --------~~~~~~~~~~---------------------------------------------~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          212 --------LLLEIFVDVT---------------------------------------------SSVECLELRDTDLDTFH  238 (353)
T ss_dssp             --------THHHHHHHHT---------------------------------------------TTEEEEEEESCBCTTCC
T ss_pred             --------cchhhhhhhc---------------------------------------------ccccEEECCCCcccccc
Confidence                    1111111000                                             15788888888888765


Q ss_pred             CCC------CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc
Q psy12210        318 ILL------PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT  389 (405)
Q Consensus       318 ~~~------~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~  389 (405)
                      ...      ...++.++++ +.+.+..   +..+ +..+..+++ +.|+|++|+|+.++...|.++++|+.|+|++|.++
T Consensus       239 ~~~l~~~~~~~~l~~l~L~~~~l~~~~---l~~l-~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          239 FSELSTGETNSLIKKFTFRNVKITDES---LFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CC------CCCCCCEEEEESCBCCHHH---HHHH-HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccccccccchhhccccccccccCcc---hhhh-HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            332      3467778888 7665421   1111 356888999 99999999999999988899999999999999988


Q ss_pred             ccCh
Q psy12210        390 ELPP  393 (405)
Q Consensus       390 ~i~~  393 (405)
                      .-.+
T Consensus       315 ~~~~  318 (353)
T 2z80_A          315 CSCP  318 (353)
T ss_dssp             CCHH
T ss_pred             CcCC
Confidence            6543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.91  E-value=1.3e-23  Score=196.95  Aligned_cols=273  Identities=18%  Similarity=0.188  Sum_probs=187.6

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|+|+++++  |.++++|++|++++|.+++..             . .......+.++++++.+.+++.  +...
T Consensus        70 ~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-------------~-~~~l~~L~~L~l~~n~i~~~~~--~~~l  131 (347)
T 4fmz_A           70 YLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-------------A-LQNLTNLRELYLNEDNISDISP--LANL  131 (347)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------------G-GTTCTTCSEEECTTSCCCCCGG--GTTC
T ss_pred             EEEccCCccccchh--hhcCCcCCEEEccCCcccCch-------------H-HcCCCcCCEEECcCCcccCchh--hccC
Confidence            68999999999887  899999999999999987421             1 1112234567778888777654  2111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCc-cccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGL-NKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ  159 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l-~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~  159 (405)
                      .                     .++.+++++|.. ..++. .-.++++.|++++|.+..+++  +..+++|++|++++|.
T Consensus       132 ~---------------------~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          132 T---------------------KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             T---------------------TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             C---------------------ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            1                     127777777743 33332 113577888888888877765  6777888888888888


Q ss_pred             ceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC
Q psy12210        160 ISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI  239 (405)
Q Consensus       160 l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  239 (405)
                      +..+.+  +..+++|+.+++++|.+..+++  +..+++|+.|++++|.+.....              ......+....+
T Consensus       189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--------------~~~l~~L~~L~l  250 (347)
T 4fmz_A          189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--------------LANLSQLTWLEI  250 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--------------GTTCTTCCEEEC
T ss_pred             cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--------------hhcCCCCCEEEC
Confidence            877754  6777888888888888777765  6777888888888877541100              001111111122


Q ss_pred             CCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-
Q psy12210        240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-  318 (405)
Q Consensus       240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-  318 (405)
                      .++.+..++                                        .+...       .+|++|++++|.++.++. 
T Consensus       251 ~~n~l~~~~----------------------------------------~~~~l-------~~L~~L~l~~n~l~~~~~~  283 (347)
T 4fmz_A          251 GTNQISDIN----------------------------------------AVKDL-------TKLKMLNVGSNQISDISVL  283 (347)
T ss_dssp             CSSCCCCCG----------------------------------------GGTTC-------TTCCEEECCSSCCCCCGGG
T ss_pred             CCCccCCCh----------------------------------------hHhcC-------CCcCEEEccCCccCCChhh
Confidence            222222210                                        01111       169999999999998863 


Q ss_pred             CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210        319 LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       319 ~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~  390 (405)
                      ...++++.|+++ |.+...+        +..++++++ +.|++++|+++.+++  +..+++|+.|++++|.|++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~--------~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          284 NNLSQLNSLFLNNNQLGNED--------MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK  347 (347)
T ss_dssp             GGCTTCSEEECCSSCCCGGG--------HHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred             cCCCCCCEEECcCCcCCCcC--------hhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence            235799999999 9999887        778999999 999999999999987  7889999999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=1.9e-23  Score=209.03  Aligned_cols=262  Identities=21%  Similarity=0.230  Sum_probs=191.1

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|+|+.+|...+   ++|+.|++++|.|+.             ++.   .......+++++|.++.++. .+.  
T Consensus        44 ~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~-------------lp~---~l~~L~~L~Ls~N~l~~lp~-~l~--  101 (622)
T 3g06_A           44 VLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS-------------LPA---LPPELRTLEVSGNQLTSLPV-LPP--  101 (622)
T ss_dssp             EEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC-------------CCC---CCTTCCEEEECSCCCSCCCC-CCT--
T ss_pred             EEEecCCCcCccChhhC---CCCcEEEecCCCCCC-------------CCC---cCCCCCEEEcCCCcCCcCCC-CCC--
Confidence            58999999999987543   799999999999872             222   12334556777787777765 111  


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                                            .++.+++++|.++.+|. .+++++.|++++|.++.++..    +++|+.|++++|.++
T Consensus       102 ----------------------~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          102 ----------------------GLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLA  154 (622)
T ss_dssp             ----------------------TCCEEEECSCCCCCCCC-CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCS
T ss_pred             ----------------------CCCEEECcCCcCCCCCC-CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCC
Confidence                                  13888888888888887 567888888888888887753    478888888888888


Q ss_pred             eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCC
Q psy12210        162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKG  241 (405)
Q Consensus       162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (405)
                      .++.    .+.+|+.|++++|.++.++    ..+++|+.|++++|.+...             +.   ....+..+    
T Consensus       155 ~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l-------------~~---~~~~L~~L----  206 (622)
T 3g06_A          155 SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASL-------------PT---LPSELYKL----  206 (622)
T ss_dssp             CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-------------CC---CCTTCCEE----
T ss_pred             CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCC-------------CC---ccchhhEE----
Confidence            7653    3467888888888888887    3467888888888875410             00   00011111    


Q ss_pred             CcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC
Q psy12210        242 QNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP  321 (405)
Q Consensus       242 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~  321 (405)
                                                        .+.++.+..++..           ..+|+.|++++|.++.+| ..+
T Consensus       207 ----------------------------------~L~~N~l~~l~~~-----------~~~L~~L~Ls~N~L~~lp-~~l  240 (622)
T 3g06_A          207 ----------------------------------WAYNNRLTSLPAL-----------PSGLKELIVSGNRLTSLP-VLP  240 (622)
T ss_dssp             ----------------------------------ECCSSCCSSCCCC-----------CTTCCEEECCSSCCSCCC-CCC
T ss_pred             ----------------------------------ECcCCcccccCCC-----------CCCCCEEEccCCccCcCC-CCC
Confidence                                              1222233322211           026999999999999998 566


Q ss_pred             CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC
Q psy12210        322 EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY  399 (405)
Q Consensus       322 ~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l  399 (405)
                      ++|+.|+++ |.|+.++        .    .+++ +.|+|++|+|+.++. .|.++++|+.|+|++|.+++..+..|..+
T Consensus       241 ~~L~~L~Ls~N~L~~lp--------~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          241 SELKELMVSGNRLTSLP--------M----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             TTCCEEECCSSCCSCCC--------C----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CcCcEEECCCCCCCcCC--------c----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            899999999 9999998        3    5677 999999999999975 48899999999999999998776655443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=2.5e-23  Score=189.64  Aligned_cols=178  Identities=24%  Similarity=0.342  Sum_probs=134.6

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEE
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLR  202 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~  202 (405)
                      +++++|++++|.++.+.+..|.++++|++|++++|. ++.+.+..|..+++|++|++++|.++.+++..|..+++|+.|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            467888888888888777778888888888888886 7777777788888888888888888888777778888888888


Q ss_pred             eecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCC
Q psy12210        203 ISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPV  282 (405)
Q Consensus       203 l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (405)
                      +++|.+.                                    .++...+...                           
T Consensus       136 l~~n~l~------------------------------------~~~~~~~~~l---------------------------  152 (285)
T 1ozn_A          136 LQDNALQ------------------------------------ALPDDTFRDL---------------------------  152 (285)
T ss_dssp             CCSSCCC------------------------------------CCCTTTTTTC---------------------------
T ss_pred             CCCCccc------------------------------------ccCHhHhccC---------------------------
Confidence            8887643                                    2222222111                           


Q ss_pred             CCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210        283 EKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR  357 (405)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L  357 (405)
                                        .+|++|++++|.++.+|...   .++++.|+++ |.+.++.        +..|..+++ +.|
T Consensus       153 ------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L  206 (285)
T 1ozn_A          153 ------------------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--------PHAFRDLGRLMTL  206 (285)
T ss_dssp             ------------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEE
T ss_pred             ------------------CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC--------HhHccCcccccEe
Confidence                              04778888888888777543   3578888888 8888886        677888888 888


Q ss_pred             EecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210        358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       358 ~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~  390 (405)
                      ++++|+|+.+++..|..+++|+.|+|++|.+..
T Consensus       207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             eCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            888888888888778888888888888887763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=8.7e-23  Score=198.12  Aligned_cols=305  Identities=13%  Similarity=0.090  Sum_probs=180.2

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|+|++++  .|+.+++|++|++++|.+++.             +  .......+.+++++|.+..++   +...
T Consensus        46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-------------~--~~~l~~L~~L~Ls~N~l~~~~---~~~l  105 (457)
T 3bz5_A           46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-------------D--LSQNTNLTYLACDSNKLTNLD---VTPL  105 (457)
T ss_dssp             EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-------------C--CTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred             EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-------------c--cccCCCCCEEECcCCCCceee---cCCC
Confidence            5889999999885  488999999999999998741             1  111122445667777776654   1111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC-cc
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN-QI  160 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n-~l  160 (405)
                      .                     .++.+++++|.++.+|..-.++++.|++++|.++.++   ++++++|++|++++| .+
T Consensus       106 ~---------------------~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          106 T---------------------KLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             T---------------------TCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCC
T ss_pred             C---------------------cCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCcc
Confidence            0                     1377888888887777444567888888888888764   667778888888877 34


Q ss_pred             eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210        161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK  240 (405)
Q Consensus       161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (405)
                      ..+   .+..+++|+.|++++|.++.++   +..+++|+.|++++|.+...               .......+....+.
T Consensus       162 ~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---------------~l~~l~~L~~L~Ls  220 (457)
T 3bz5_A          162 TKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---------------DLNQNIQLTFLDCS  220 (457)
T ss_dssp             CCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---------------CCTTCTTCSEEECC
T ss_pred             ccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee---------------ccccCCCCCEEECc
Confidence            333   3667778888888888887775   56677788888887776521               11112223333444


Q ss_pred             CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCC-CcCCCC
Q psy12210        241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGL-NKVPIL  319 (405)
Q Consensus       241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l-~~~p~~  319 (405)
                      ++.+..++...+                 .......++.+.+...+...+..+..-.....+++.+++++|.+ ..+|..
T Consensus       221 ~N~l~~ip~~~l-----------------~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~  283 (457)
T 3bz5_A          221 SNKLTEIDVTPL-----------------TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE  283 (457)
T ss_dssp             SSCCSCCCCTTC-----------------TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred             CCcccccCcccc-----------------CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccc
Confidence            444444331111                 11122223333333332111111110000011344444444432 223333


Q ss_pred             CCCCceEEEEE-ec-ceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccC
Q psy12210        320 LPEATTELTYM-VS-IDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP  392 (405)
Q Consensus       320 ~~~~l~~L~l~-n~-i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~  392 (405)
                      ..+.++.|+++ |. +..++. ....+..-.+++.++ +.|++++|+|+.++   +..+++|+.|++++|++++++
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~-~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l~  355 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDC-QAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS  355 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEEC-TTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBCT
T ss_pred             ccccCCEEECCCCcccceecc-CCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCcc
Confidence            34677777777 54 333331 111111223677788 99999999999973   788999999999999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=5.5e-24  Score=196.63  Aligned_cols=196  Identities=17%  Similarity=0.180  Sum_probs=129.0

Q ss_pred             ceEEcCCCCcc-ccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC-CCCEEEccC
Q psy12210        106 GIVDCREKGLN-KVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK-SLTSLTLNN  181 (405)
Q Consensus       106 ~~l~~~~n~l~-~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~  181 (405)
                      +++++++|.++ .+|..+  .++|++|++++|.++...+..+.++++|++|++++|.++...|..+..++ +|+.|++++
T Consensus       104 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             SEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             CEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            56666666665 455433  25677777777777755555667777777777777777755556666666 777777777


Q ss_pred             CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210        182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET  261 (405)
Q Consensus       182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~  261 (405)
                      |.++...+..|..+. |+.|++++|.+.                                    ......+...      
T Consensus       184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~------------------------------------~~~~~~~~~l------  220 (313)
T 1ogq_A          184 NRLTGKIPPTFANLN-LAFVDLSRNMLE------------------------------------GDASVLFGSD------  220 (313)
T ss_dssp             SEEEEECCGGGGGCC-CSEEECCSSEEE------------------------------------ECCGGGCCTT------
T ss_pred             CeeeccCChHHhCCc-ccEEECcCCccc------------------------------------CcCCHHHhcC------
Confidence            777655555566665 777777776643                                    1111111110      


Q ss_pred             cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-ecceeeec
Q psy12210        262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-VSIDRVDK  338 (405)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~i~~i~~  338 (405)
                                                             .+|+.|++++|.++..+..+  .+++++|+++ |++.+.. 
T Consensus       221 ---------------------------------------~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~-  260 (313)
T 1ogq_A          221 ---------------------------------------KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL-  260 (313)
T ss_dssp             ---------------------------------------SCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC-
T ss_pred             ---------------------------------------CCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcC-
Confidence                                                   15788888888887554332  4678888888 8887554 


Q ss_pred             cchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCC-CcccC
Q psy12210        339 VLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND-ITELP  392 (405)
Q Consensus       339 ~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~-l~~i~  392 (405)
                             +..|..+++ +.|+|++|+++...+.. ..+++|+.+++++|. +.+.|
T Consensus       261 -------p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          261 -------PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -------CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             -------ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence                   577888888 88888888888555443 678888888888887 55543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=3.6e-23  Score=205.96  Aligned_cols=197  Identities=17%  Similarity=0.172  Sum_probs=125.1

Q ss_pred             CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh---hhhhcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210        149 RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD---GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP  225 (405)
Q Consensus       149 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~  225 (405)
                      +|+.|++++|.+..++...+..+++|++|++++|.++...+   ..++.+++|+.|++++|.+..      +...    .
T Consensus       311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~------~~~~----~  380 (549)
T 2z81_A          311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS------MQKT----G  380 (549)
T ss_dssp             TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC------HHHH----H
T ss_pred             cceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc------cccc----h
Confidence            34455555555554443333456777777777777765331   225566777777777776542      1100    0


Q ss_pred             CCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCce
Q psy12210        226 RLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGI  305 (405)
Q Consensus       226 ~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~  305 (405)
                      ........+...++.++.+..++....               .........++++.+..+++...          .++++
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~---------------~~~~L~~L~Ls~N~l~~l~~~~~----------~~L~~  435 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTFHPMPDSCQ---------------WPEKMRFLNLSSTGIRVVKTCIP----------QTLEV  435 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCCCCCCSCCC---------------CCTTCCEEECTTSCCSCCCTTSC----------TTCSE
T ss_pred             hhhhcCCCCCEEECCCCCCccCChhhc---------------ccccccEEECCCCCcccccchhc----------CCceE
Confidence            001112233334455555554443211               11122334455555554443211          26999


Q ss_pred             eecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeec
Q psy12210        306 VDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRL  383 (405)
Q Consensus       306 l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L  383 (405)
                      |++++|+++.++ ...+.+++|+++ |+++.++        .  ...+++ +.|+|++|+|+.+++..|..+++|+.|+|
T Consensus       436 L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~~ip--------~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          436 LDVSNNNLDSFS-LFLPRLQELYISRNKLKTLP--------D--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             EECCSSCCSCCC-CCCTTCCEEECCSSCCSSCC--------C--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred             EECCCCChhhhc-ccCChhcEEECCCCccCcCC--------C--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence            999999999876 345789999999 9999988        3  356888 99999999999999999999999999999


Q ss_pred             ccCCCccc
Q psy12210        384 EQNDITEL  391 (405)
Q Consensus       384 ~~N~l~~i  391 (405)
                      ++|.+..-
T Consensus       505 ~~N~~~~~  512 (549)
T 2z81_A          505 HTNPWDCS  512 (549)
T ss_dssp             CSSCBCCC
T ss_pred             cCCCccCC
Confidence            99997653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=4.9e-23  Score=200.89  Aligned_cols=182  Identities=18%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      +|+++++.++.++.  +..+++|++|++++|.+++..++              ........+.++++.+..++. .....
T Consensus        50 ~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~~--------------~~l~~L~~L~l~~n~l~~~~~-~~~l~  112 (466)
T 1o6v_A           50 TLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPL--------------KNLTKLVDILMNNNQIADITP-LANLT  112 (466)
T ss_dssp             EEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGGG--------------TTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             EEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchhh--------------hccccCCEEECCCCccccChh-hcCCC
Confidence            45666777766654  56677777777777766542220              001112333444444444432 11111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccc-cCceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ  159 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c-~~~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~  159 (405)
                      .+....+..+......+ ...+ .++.+++++|.++.+|. .-.++++.|+++ +.+..+++  +.++++|+.|++++|.
T Consensus       113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~  188 (466)
T 1o6v_A          113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNK  188 (466)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCc
Confidence            22222222222221111 2222 23777777777666553 112344444443 23333322  4444444444444444


Q ss_pred             ceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcc
Q psy12210        160 ISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF  208 (405)
Q Consensus       160 l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l  208 (405)
                      ++.+.  .+..+++|++|++++|.+..+++  ++.+++|+.|++++|.+
T Consensus       189 l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          189 VSDIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL  233 (466)
T ss_dssp             CCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             CCCCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCc
Confidence            44432  24444444444444444444433  33444444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=2.4e-23  Score=191.70  Aligned_cols=241  Identities=17%  Similarity=0.230  Sum_probs=180.8

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .++.++++++.+|...   .++|+.|++++|.++                                    .++...|...
T Consensus        11 ~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~------------------------------------~i~~~~~~~l   51 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI---PSSATRLELESNKLQ------------------------------------SLPHGVFDKL   51 (306)
T ss_dssp             EEECCSSCCSSCCSCC---CTTCCEEECCSSCCC------------------------------------CCCTTTTTTC
T ss_pred             EEEcCCCCcccCCCCC---CCCCCEEECCCCccC------------------------------------ccCHhHhhcc
Confidence            4678888899988743   368899999998875                                    2222222111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcccc---CCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV---PILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLS  156 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~l---p~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls  156 (405)
                      .                     .++.+++++|.++.+   |..+  .+++++|++++|.++.++.. +.++++|+.|+++
T Consensus        52 ~---------------------~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~  109 (306)
T 2z66_A           52 T---------------------QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ  109 (306)
T ss_dssp             T---------------------TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred             c---------------------cCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECC
Confidence            0                     126777777777654   2211  36889999999998887764 7888999999999


Q ss_pred             CCcceeecc-cccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCC
Q psy12210        157 KNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFA  235 (405)
Q Consensus       157 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  235 (405)
                      +|.++.+++ ..+..+++|++|++++|.+..+.+..|..+++|+.|++++|.+..                         
T Consensus       110 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------  164 (306)
T 2z66_A          110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------------------------  164 (306)
T ss_dssp             TSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG-------------------------
T ss_pred             CCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc-------------------------
Confidence            999988875 578888999999999999988888888888999999999887540                         


Q ss_pred             CCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCc
Q psy12210        236 PSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK  315 (405)
Q Consensus       236 ~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~  315 (405)
                                ......+...                                             .+|++|++++|.++.
T Consensus       165 ----------~~~~~~~~~l---------------------------------------------~~L~~L~Ls~n~l~~  189 (306)
T 2z66_A          165 ----------NFLPDIFTEL---------------------------------------------RNLTFLDLSQCQLEQ  189 (306)
T ss_dssp             ----------GEECSCCTTC---------------------------------------------TTCCEEECTTSCCCE
T ss_pred             ----------ccchhHHhhC---------------------------------------------cCCCEEECCCCCcCC
Confidence                      0011111100                                             158899999999988


Q ss_pred             CCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc-cCceeecccCCCc
Q psy12210        316 VPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK-RLRRIRLEQNDIT  389 (405)
Q Consensus       316 ~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~-~L~~L~L~~N~l~  389 (405)
                      ++...   .+++++|+++ |++.+++        +..+..+++ +.|+|++|+|+.+.+..+..++ +|+.|+|++|.++
T Consensus       190 ~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          190 LSPTAFNSLSSLQVLNMSHNNFFSLD--------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSBCC--------SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             cCHHHhcCCCCCCEEECCCCccCccC--------hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            85443   3688999999 9999888        667888999 9999999999998888888884 8999999999987


Q ss_pred             cc
Q psy12210        390 EL  391 (405)
Q Consensus       390 ~i  391 (405)
                      .-
T Consensus       262 ~~  263 (306)
T 2z66_A          262 CT  263 (306)
T ss_dssp             CS
T ss_pred             cc
Confidence            53

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.90  E-value=3.9e-23  Score=180.92  Aligned_cols=195  Identities=29%  Similarity=0.500  Sum_probs=166.8

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .+++++++++.+|...   .++++.|++++|.|++                                    ++...|...
T Consensus        15 ~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~------------------------------------i~~~~~~~l   55 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNL---PETITEIRLEQNTIKV------------------------------------IPPGAFSPY   55 (220)
T ss_dssp             EEECTTSCCSSCCSSC---CTTCCEEECCSSCCCE------------------------------------ECTTSSTTC
T ss_pred             EEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCC------------------------------------cCHhHhhCC
Confidence            4788999999998753   3789999999999862                                    222222111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccC-CCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP-ILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp-~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|.++.++ ..+.  ++|++|++++|.|+.+++..|.++++|+.|++++|
T Consensus        56 ~---------------------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           56 K---------------------KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             T---------------------TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             C---------------------CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC
Confidence            1                     1278888888888874 3442  68999999999999999988999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH  238 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (405)
                      .++.+.+..|.++++|+.|++++|.++.++++.|..+++|+.|++++|++.|+|.+.|+..|+...+.......|..|..
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~~~~~~~~~C~~P~~  194 (220)
T 2v9t_B          115 KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRR  194 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCCBCSCCBEEESGG
T ss_pred             CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHHHHHHHHhCCCCccCCCcCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999998887777788999999


Q ss_pred             CCCCcccccCCCcccccC
Q psy12210        239 IKGQNILDIPEHEFKCSG  256 (405)
Q Consensus       239 l~~~~l~~l~~~~~~~~~  256 (405)
                      +.+..+.++....+.|..
T Consensus       195 l~g~~l~~l~~~~~~c~~  212 (220)
T 2v9t_B          195 LANKRIGQIKSKKFRCSA  212 (220)
T ss_dssp             GTTCBGGGSCGGGCCC--
T ss_pred             HcCCchhhCCHHHCcCcc
Confidence            999999999999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=7.7e-24  Score=196.05  Aligned_cols=200  Identities=16%  Similarity=0.111  Sum_probs=118.6

Q ss_pred             ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      +.+++++|.++.++. .-.++|++|++++|.++.++.     .++|+.|++++|.++.+++..   +++|++|++++|.+
T Consensus        61 ~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l  132 (317)
T 3o53_A           61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKI  132 (317)
T ss_dssp             CEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCC
T ss_pred             CEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCC
Confidence            455555555544332 112466666666666665442     256666777777666665432   45566777777777


Q ss_pred             cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210        185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK  264 (405)
Q Consensus       185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~  264 (405)
                      +.+++..|..+++|+.|++++|.+.                                    .+....+...         
T Consensus       133 ~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~~~~~~~~---------  167 (317)
T 3o53_A          133 TMLRDLDEGCRSRVQYLDLKLNEID------------------------------------TVNFAELAAS---------  167 (317)
T ss_dssp             CSGGGBCTGGGSSEEEEECTTSCCC------------------------------------EEEGGGGGGG---------
T ss_pred             CCccchhhhccCCCCEEECCCCCCC------------------------------------cccHHHHhhc---------
Confidence            6666666666667777777666543                                    1111111000         


Q ss_pred             ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC-CCCceEEEEE-ecceeeeccchh
Q psy12210        265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-PEATTELTYM-VSIDRVDKVLLY  342 (405)
Q Consensus       265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~-~~~l~~L~l~-n~i~~i~~~~~~  342 (405)
                                                         ..++++|++++|.++.++... .+++++|+++ |++++++     
T Consensus       168 -----------------------------------l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~-----  207 (317)
T 3o53_A          168 -----------------------------------SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG-----  207 (317)
T ss_dssp             -----------------------------------TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC-----
T ss_pred             -----------------------------------cCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcch-----
Confidence                                               004666777777776665433 4667777777 7777766     


Q ss_pred             ccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc-ccChhhcCCCcccc
Q psy12210        343 SYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT-ELPPKAFANYKRLR  403 (405)
Q Consensus       343 ~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~  403 (405)
                         + .+..+++ +.|+|++|+|+.++.. +..+++|+.|+|++|.++ +..+..+..+++|+
T Consensus       208 ---~-~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~  265 (317)
T 3o53_A          208 ---P-EFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (317)
T ss_dssp             ---G-GGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred             ---h-hhcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence               3 3666777 7777777777777653 666777777777777776 44444555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=4.5e-22  Score=192.96  Aligned_cols=303  Identities=20%  Similarity=0.223  Sum_probs=202.0

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|++++|+++++|.  +  .++|+.|++++|.+++.             +..   ....+.+++++|.+..++...   .
T Consensus        75 ~L~l~~~~l~~lp~--~--~~~L~~L~l~~n~l~~l-------------p~~---~~~L~~L~l~~n~l~~l~~~~---~  131 (454)
T 1jl5_A           75 ELELNNLGLSSLPE--L--PPHLESLVASCNSLTEL-------------PEL---PQSLKSLLVDNNNLKALSDLP---P  131 (454)
T ss_dssp             EEECTTSCCSCCCS--C--CTTCSEEECCSSCCSSC-------------CCC---CTTCCEEECCSSCCSCCCSCC---T
T ss_pred             EEEecCCccccCCC--C--cCCCCEEEccCCcCCcc-------------ccc---cCCCcEEECCCCccCcccCCC---C
Confidence            47888888888776  2  46788888888888741             111   122334455555555544321   1


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccc-CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcc
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCA-DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQI  160 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~-~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l  160 (405)
                      ......++.+.... -|..+.+. ++++++++|.++.+|... .++++|++++|.++.++  .+.++++|+.|++++|.+
T Consensus       132 ~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~~lp~~~-~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLKKLPDLP-PSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCcccCCCc-ccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcC
Confidence            12222233332222 23344433 499999999999888654 58999999999999987  489999999999999999


Q ss_pred             eeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCC
Q psy12210        161 SKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIK  240 (405)
Q Consensus       161 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  240 (405)
                      +.++.    ..++|++|++++|.++.++.  |..+++|+.|++++|.+...             +.   ....+....+.
T Consensus       208 ~~l~~----~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l-------------~~---~~~~L~~L~l~  265 (454)
T 1jl5_A          208 KKLPD----LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL-------------PD---LPPSLEALNVR  265 (454)
T ss_dssp             SSCCC----CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSC-------------CS---CCTTCCEEECC
T ss_pred             CcCCC----CcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcc-------------cc---cccccCEEECC
Confidence            88653    23589999999999998884  78899999999999987521             00   01222333344


Q ss_pred             CCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC
Q psy12210        241 GQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL  320 (405)
Q Consensus       241 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~  320 (405)
                      ++.+..++...                  .......++.+.++.++...           .+++.|++++|.++.++ ..
T Consensus       266 ~N~l~~l~~~~------------------~~L~~L~ls~N~l~~l~~~~-----------~~L~~L~l~~N~l~~i~-~~  315 (454)
T 1jl5_A          266 DNYLTDLPELP------------------QSLTFLDVSENIFSGLSELP-----------PNLYYLNASSNEIRSLC-DL  315 (454)
T ss_dssp             SSCCSCCCCCC------------------TTCCEEECCSSCCSEESCCC-----------TTCCEEECCSSCCSEEC-CC
T ss_pred             CCcccccCccc------------------CcCCEEECcCCccCcccCcC-----------CcCCEEECcCCcCCccc-CC
Confidence            44444433210                  11122234444444432110           26889999999998876 34


Q ss_pred             CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccC--hhhc
Q psy12210        321 PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP--PKAF  396 (405)
Q Consensus       321 ~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~--~~~f  396 (405)
                      ++++++|+++ |++.+++        .    .+++ +.|++++|+++.++.    .+++|+.|++++|++++++  +..+
T Consensus       316 ~~~L~~L~Ls~N~l~~lp--------~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l  379 (454)
T 1jl5_A          316 PPSLEELNVSNNKLIELP--------A----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESV  379 (454)
T ss_dssp             CTTCCEEECCSSCCSCCC--------C----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             cCcCCEEECCCCcccccc--------c----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHH
Confidence            5789999999 9999887        2    2577 999999999999886    3789999999999999844  3446


Q ss_pred             CCC
Q psy12210        397 ANY  399 (405)
Q Consensus       397 ~~l  399 (405)
                      ..+
T Consensus       380 ~~L  382 (454)
T 1jl5_A          380 EDL  382 (454)
T ss_dssp             CEE
T ss_pred             Hhh
Confidence            555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=2.9e-22  Score=195.46  Aligned_cols=90  Identities=20%  Similarity=0.307  Sum_probs=72.3

Q ss_pred             cCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccC
Q psy12210        302 ADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRL  378 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L  378 (405)
                      +|+.|++++|.++.++. ...++|+.|+++ |++.+++        +  +..+++ +.|++++|+++.++  .+..+++|
T Consensus       288 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--------~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L  355 (466)
T 1o6v_A          288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--------P--VSSLTKLQRLFFYNNKVSDVS--SLANLTNI  355 (466)
T ss_dssp             TCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--------G--GGGCTTCCEEECCSSCCCCCG--GGTTCTTC
T ss_pred             ccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCch--------h--hccCccCCEeECCCCccCCch--hhccCCCC
Confidence            68888888888887754 234788889998 8888876        3  678888 99999999998884  48889999


Q ss_pred             ceeecccCCCcccChhhcCCCccccCC
Q psy12210        379 RRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       379 ~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +.|++++|+++++++  +..+++|++|
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L  380 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQL  380 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEE
Confidence            999999999988876  6777777653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.89  E-value=1.6e-22  Score=176.96  Aligned_cols=115  Identities=55%  Similarity=0.926  Sum_probs=109.4

Q ss_pred             CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210         95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL  174 (405)
Q Consensus        95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  174 (405)
                      ..||..|+|..+.++|++++++++|..+++.++.|++++|.|+.+++..|..+++|+.|++++|.++.+.+..|.++++|
T Consensus         3 ~~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L   82 (220)
T 2v9t_B            3 LHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL   82 (220)
T ss_dssp             CCSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC
T ss_pred             CCCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC
Confidence            57999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ++|++++|.++.+++++|..+++|+.|++++|.+.
T Consensus        83 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           83 NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence            99999999999999999999999999999998743

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.8e-22  Score=182.13  Aligned_cols=193  Identities=23%  Similarity=0.290  Sum_probs=168.3

Q ss_pred             CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        105 DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       105 ~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      .+.++|++++++++|..+++.++.|++++|.++.+++..|.++++|+.|++++|.++.+++.  ..+++|+.|++++|.+
T Consensus        12 l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l   89 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQL   89 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCC
T ss_pred             ccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcC
Confidence            49999999999999999999999999999999999988999999999999999999998754  7899999999999999


Q ss_pred             cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210        185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK  264 (405)
Q Consensus       185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~  264 (405)
                      +.++. .+..+++|+.|++++|.+.                                    .++...|...         
T Consensus        90 ~~l~~-~~~~l~~L~~L~l~~N~l~------------------------------------~l~~~~~~~l---------  123 (290)
T 1p9a_G           90 QSLPL-LGQTLPALTVLDVSFNRLT------------------------------------SLPLGALRGL---------  123 (290)
T ss_dssp             SSCCC-CTTTCTTCCEEECCSSCCC------------------------------------CCCSSTTTTC---------
T ss_pred             CcCch-hhccCCCCCEEECCCCcCc------------------------------------ccCHHHHcCC---------
Confidence            99986 5788999999999999753                                    3333333211         


Q ss_pred             ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEEE-ecceeeeccc
Q psy12210        265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTYM-VSIDRVDKVL  340 (405)
Q Consensus       265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~  340 (405)
                                                          .+|++|++++|+++.+|...+   ++|+.|+++ |+++.++   
T Consensus       124 ------------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~---  164 (290)
T 1p9a_G          124 ------------------------------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP---  164 (290)
T ss_dssp             ------------------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC---
T ss_pred             ------------------------------------CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC---
Confidence                                                159999999999999987664   689999999 9999999   


Q ss_pred             hhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210        341 LYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       341 ~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~  390 (405)
                           +..|.++++ +.|+|++|+|+.++...+ .+++|+.|+|++|.+.-
T Consensus       165 -----~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          165 -----AGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCC
T ss_pred             -----HHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccC
Confidence                 778899999 999999999999998755 46899999999998763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=6.9e-22  Score=191.65  Aligned_cols=78  Identities=22%  Similarity=0.395  Sum_probs=51.3

Q ss_pred             cCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccC--cccccCC--
Q psy12210        302 ADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP--PKAFANY--  375 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~--~~~~~~l--  375 (405)
                      ++++|++++|+++.+|.. ++++++|+++ |+++.++        .    .+++ +.|++++|+++.++  +..+..+  
T Consensus       318 ~L~~L~Ls~N~l~~lp~~-~~~L~~L~L~~N~l~~lp--------~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~  384 (454)
T 1jl5_A          318 SLEELNVSNNKLIELPAL-PPRLERLIASFNHLAEVP--------E----LPQNLKQLHVEYNPLREFPDIPESVEDLRM  384 (454)
T ss_dssp             TCCEEECCSSCCSCCCCC-CTTCCEEECCSSCCSCCC--------C----CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             cCCEEECCCCcccccccc-CCcCCEEECCCCcccccc--------c----hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence            699999999999998765 5899999999 9999988        3    4677 99999999999843  3556666  


Q ss_pred             -----------ccCceeecccCCCcccC
Q psy12210        376 -----------KRLRRIRLEQNDITELP  392 (405)
Q Consensus       376 -----------~~L~~L~L~~N~l~~i~  392 (405)
                                 ++|+.|++++|.+++++
T Consensus       385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~  412 (454)
T 1jl5_A          385 NSHLAEVPELPQNLKQLHVETNPLREFP  412 (454)
T ss_dssp             CC--------------------------
T ss_pred             cccccccccccCcCCEEECCCCcCCccc
Confidence                       88999999999999964

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.88  E-value=9.9e-23  Score=192.01  Aligned_cols=117  Identities=30%  Similarity=0.510  Sum_probs=110.8

Q ss_pred             CCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCccccc-CCCCCcEEecCCCcceeecccccCCC
Q psy12210         93 AEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA-NYKRLRRIDLSKNQISKVAVDAFQGL  171 (405)
Q Consensus        93 ~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l  171 (405)
                      ....||..|.|..+.++|++++++++|..++..++.|++++|.|+.+++..|. ++++|+.|++++|.++.+++..|.++
T Consensus         8 ~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l   87 (361)
T 2xot_A            8 SVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV   87 (361)
T ss_dssp             CCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence            45689999999999999999999999999999999999999999999998887 99999999999999999999999999


Q ss_pred             CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus        88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~  125 (361)
T 2xot_A           88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV  125 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence            99999999999999999999999999999999999754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.7e-22  Score=175.36  Aligned_cols=113  Identities=35%  Similarity=0.652  Sum_probs=106.8

Q ss_pred             CCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCE
Q psy12210         97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS  176 (405)
Q Consensus        97 ~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  176 (405)
                      ||..|.|..+.++|++++++++|..+++++++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|++
T Consensus         1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A            1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            89999999999999999999999999999999999999999999988999999999999999999998888899999999


Q ss_pred             EEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        177 LTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       177 L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      |++++|.++.+++..|..+++|+.|++++|.+.
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  113 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ  113 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCc
Confidence            999999999999988899999999999988743

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.88  E-value=3.9e-22  Score=170.72  Aligned_cols=161  Identities=33%  Similarity=0.705  Sum_probs=129.2

Q ss_pred             CCCCCCccccCceEEcCCCCccccCCCCCCCc-----------------------cEEEccCCCCCCCCcccccCCCCCc
Q psy12210         95 PSCPHPCRCADGIVDCREKGLNKVPILLPEAT-----------------------TELRLEQNDITELPPKAFANYKRLR  151 (405)
Q Consensus        95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L-----------------------~~L~L~~n~i~~l~~~~~~~l~~L~  151 (405)
                      ..||..|+|..+.++|++++++++|..+++++                       +.|++++|.|+.+++..|.++++|+
T Consensus         2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~   81 (193)
T 2wfh_A            2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL   81 (193)
T ss_dssp             --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence            46999999999999999999999997665444                       4555555555555555566677777


Q ss_pred             EEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCcc
Q psy12210        152 RIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYT  231 (405)
Q Consensus       152 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~  231 (405)
                      .|++++|.++.+++..|.++++|+.|++++|.++.+++++|..+++|+.|++++|++.|+|.+.|+..|+..........
T Consensus        82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~  161 (193)
T 2wfh_A           82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIA  161 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCC
T ss_pred             EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCc
Confidence            77777777777777777788888888888888888888888889999999999999999999999999998876666667


Q ss_pred             ccCCCCCCCCCcccccCCCccccc
Q psy12210        232 KCFAPSHIKGQNILDIPEHEFKCS  255 (405)
Q Consensus       232 ~~~~~~~l~~~~l~~l~~~~~~~~  255 (405)
                      .|..|..+.+..+..++...+.+.
T Consensus       162 ~C~~P~~l~g~~l~~~~~~~~~~~  185 (193)
T 2wfh_A          162 RCAGPGEMADKLLLTTPSKKFTCA  185 (193)
T ss_dssp             BEEESGGGTTCBTTTSCGGGCCC-
T ss_pred             CcCCchHHCCCCcccCChHHeeeh
Confidence            899999999999999998877554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.88  E-value=5.9e-22  Score=173.38  Aligned_cols=115  Identities=35%  Similarity=0.654  Sum_probs=106.8

Q ss_pred             CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCc-ccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210         95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPP-KAFANYKRLRRIDLSKNQISKVAVDAFQGLKS  173 (405)
Q Consensus        95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  173 (405)
                      ..||..|+|..+.++|++|.++++|..++..++.|++++|.++.+++ ..|.++++|+.|++++|.++.+++..|.++++
T Consensus         3 ~~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~   82 (220)
T 2v70_A            3 LACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG   82 (220)
T ss_dssp             -CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC
Confidence            57999999999999999999999999999999999999999999854 56899999999999999999999889999999


Q ss_pred             CCEEEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      |++|++++|.++.++++.|..+++|+.|++++|.+.
T Consensus        83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence            999999999999999999999999999999988743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1e-22  Score=199.29  Aligned_cols=90  Identities=11%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             CceeecCCCCCCcCCCCC-CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCc
Q psy12210        303 DGIVDCREKGLNKVPILL-PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLR  379 (405)
Q Consensus       303 l~~l~l~~n~l~~~p~~~-~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~  379 (405)
                      |++|++++|.++.+|... .+.|+.|+++ |.+++++        + .+..+++ +.|+|++|+|+.++.. +..+++|+
T Consensus       171 L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~-~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~  240 (487)
T 3oja_A          171 LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--------P-EFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLE  240 (487)
T ss_dssp             CCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--------G-GGGGGTTCSEEECTTSCCCEECTT-CCCCTTCC
T ss_pred             ccEEecCCCccccccccccCCCCCEEECCCCCCCCCC--------H-hHcCCCCccEEEecCCcCcccchh-hccCCCCC
Confidence            555555555555554322 3566666666 6666665        2 3666666 7777777777766544 56666777


Q ss_pred             eeecccCCCc-ccChhhcCCCccc
Q psy12210        380 RIRLEQNDIT-ELPPKAFANYKRL  402 (405)
Q Consensus       380 ~L~L~~N~l~-~i~~~~f~~l~~L  402 (405)
                      .|++++|.+. +..+..+..++.|
T Consensus       241 ~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          241 HFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             EEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             EEEcCCCCCcCcchHHHHHhCCCC
Confidence            7777777666 2223345555444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.88  E-value=1.7e-21  Score=170.50  Aligned_cols=195  Identities=26%  Similarity=0.450  Sum_probs=164.2

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      ++++++|+++.+|...   ...++.|++++|.|++..                                   +...|...
T Consensus        15 ~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~-----------------------------------~~~~~~~l   56 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLE-----------------------------------ATGIFKKL   56 (220)
T ss_dssp             EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEEC-----------------------------------CCCCGGGC
T ss_pred             EeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccC-----------------------------------chhhhccC
Confidence            5788999999988743   345689999999886210                                   11112111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|.++.++.. +  .++|++|++++|.++.+++..|.++++|++|++++|
T Consensus        57 ~---------------------~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           57 P---------------------QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             T---------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             C---------------------CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC
Confidence            1                     127888888888888763 3  368999999999999999999999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH  238 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  238 (405)
                      .++.+.+..|.++++|+.|++++|.++.+++..|..+++|+.|++++|++.|+|.+.|+..|+...........|..|..
T Consensus       116 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~  195 (220)
T 2v70_A          116 RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF  195 (220)
T ss_dssp             CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGG
T ss_pred             cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChH
Confidence            99999999999999999999999999999888999999999999999999999999999999988777667778999999


Q ss_pred             CCCCcccccCCCccccc
Q psy12210        239 IKGQNILDIPEHEFKCS  255 (405)
Q Consensus       239 l~~~~l~~l~~~~~~~~  255 (405)
                      +.+..+.++....+.|.
T Consensus       196 l~g~~l~~l~~~~~~~~  212 (220)
T 2v70_A          196 LKEIPIQDVAIQDFTCD  212 (220)
T ss_dssp             GTTEEGGGSCGGGCCCC
T ss_pred             HCCCChhhCCHHHcccc
Confidence            99999999988877665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=1.9e-21  Score=175.68  Aligned_cols=189  Identities=24%  Similarity=0.439  Sum_probs=165.0

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEee
Q psy12210        125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS  204 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~  204 (405)
                      ..+.++++++.++.+|.. +.  .+++.|++++|.++.+++..|.++++|++|++++|.++.++.+.|..+++|+.|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            467899999999999864 33  589999999999999998899999999999999999999999999999999999999


Q ss_pred             cCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCC
Q psy12210        205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEK  284 (405)
Q Consensus       205 ~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (405)
                      +|.+.                                    .++...|...                             
T Consensus        94 ~n~l~------------------------------------~~~~~~~~~l-----------------------------  108 (270)
T 2o6q_A           94 DNKLQ------------------------------------ALPIGVFDQL-----------------------------  108 (270)
T ss_dssp             SSCCC------------------------------------CCCTTTTTTC-----------------------------
T ss_pred             CCcCC------------------------------------cCCHhHcccc-----------------------------
Confidence            98743                                    2332222111                             


Q ss_pred             CCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEe
Q psy12210        285 PTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRL  359 (405)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L  359 (405)
                                      .+|++|++++|.++.++...   .++|++|+++ |.+..++        +..|.++++ +.|+|
T Consensus       109 ----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L  164 (270)
T 2o6q_A          109 ----------------VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP--------KGVFDKLTSLKELRL  164 (270)
T ss_dssp             ----------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEEC
T ss_pred             ----------------cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC--------HhHccCCcccceeEe
Confidence                            15999999999999998655   3789999999 9999998        777999999 99999


Q ss_pred             cCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        360 EQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       360 ~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      ++|+|+.+++..|.++++|+.|+|++|+++++++..|..+++|++|
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence            9999999999999999999999999999999999889888888754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=2.3e-21  Score=175.78  Aligned_cols=174  Identities=18%  Similarity=0.155  Sum_probs=139.3

Q ss_pred             ceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n  182 (405)
                      +++++++|.++.++.. +  .++|++|++++|.++.+++..|.++++|++|++++|.+..+.+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  134 (276)
T 2z62_A           55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN  134 (276)
T ss_dssp             SEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS
T ss_pred             cEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC
Confidence            7777888887777653 2  258899999999999888888899999999999999999888777889999999999999


Q ss_pred             cCcccC-hhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210        183 NLTYLP-DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET  261 (405)
Q Consensus       183 ~l~~l~-~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~  261 (405)
                      .++.+. +..|..+++|+.|++++|.+.                                    .++...+....     
T Consensus       135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~------------------------------------~~~~~~~~~l~-----  173 (276)
T 2z62_A          135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQ------------------------------------SIYCTDLRVLH-----  173 (276)
T ss_dssp             CCCCCCCCGGGGGCTTCCEEECCSSCCC------------------------------------EECGGGGHHHH-----
T ss_pred             ccceecCchhhccCCCCCEEECCCCCCC------------------------------------cCCHHHhhhhh-----
Confidence            998754 567888999999999998754                                    22222221110     


Q ss_pred             cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc----eeecCCCCCCcCCCCCC--CCceEEEEE-ecce
Q psy12210        262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG----IVDCREKGLNKVPILLP--EATTELTYM-VSID  334 (405)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~i~  334 (405)
                                                              +++    .+++++|.++.++...+  .+++.|+++ |+++
T Consensus       174 ----------------------------------------~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~  213 (276)
T 2z62_A          174 ----------------------------------------QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK  213 (276)
T ss_dssp             ----------------------------------------TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS
T ss_pred             ----------------------------------------hccccceeeecCCCcccccCccccCCCcccEEECCCCcee
Confidence                                                    133    79999999999987665  479999999 9999


Q ss_pred             eeeccchhccccccccCCcc-ceEEecCCCCcccC
Q psy12210        335 RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP  368 (405)
Q Consensus       335 ~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~  368 (405)
                      .++        +..|+.+++ +.|+|++|.++...
T Consensus       214 ~~~--------~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          214 SVP--------DGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCC--------TTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ecC--------HhHhcccccccEEEccCCcccccC
Confidence            998        778899999 99999999998543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.87  E-value=2.3e-21  Score=165.88  Aligned_cols=162  Identities=36%  Similarity=0.769  Sum_probs=127.7

Q ss_pred             CCCCCccccCceEEcCCCCccccCCCCCCCccE-------------------------EEccCCCCCCCCcccccCCCCC
Q psy12210         96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTE-------------------------LRLEQNDITELPPKAFANYKRL  150 (405)
Q Consensus        96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~-------------------------L~L~~n~i~~l~~~~~~~l~~L  150 (405)
                      .||..|.|..+.++|++++++++|..++..++.                         |++++|.|+.+.+..|.++++|
T Consensus         1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A            1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            499999999999999999999988766544444                         4555555555544455566666


Q ss_pred             cEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCc
Q psy12210        151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY  230 (405)
Q Consensus       151 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~  230 (405)
                      ++|++++|.++.+++..|.++++|++|++++|+++.+.+..|..+++|+.|++++|++.|+|.+.|+..|+.........
T Consensus        81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~  160 (192)
T 1w8a_A           81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGA  160 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGG
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCC
Confidence            66666666666666666777777778888888888777777888889999999999999999999999998887776677


Q ss_pred             cccCCCCCCCCCcccccCCCcccccCc
Q psy12210        231 TKCFAPSHIKGQNILDIPEHEFKCSGS  257 (405)
Q Consensus       231 ~~~~~~~~l~~~~l~~l~~~~~~~~~~  257 (405)
                      ..|..|..+.+..+..+....+.|...
T Consensus       161 ~~C~~P~~l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          161 ARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             CCCCCChHHcCCChhhCcHhhcCcCCC
Confidence            889999999999999999999988743

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=1.4e-20  Score=182.72  Aligned_cols=200  Identities=17%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc
Q psy12210        106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT  185 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  185 (405)
                      +++++++|.++.+|..-.+++++|++++|.++.++   ++++++|++|++++|.++.++   +..+++|++|++++|.++
T Consensus        67 ~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A           67 TKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             SEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCS
T ss_pred             CEEEccCCcCCeEccccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccc
Confidence            55555555555554333345666666666666553   555566666666666665542   555566666666666666


Q ss_pred             ccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccc
Q psy12210        186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI  265 (405)
Q Consensus       186 ~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~  265 (405)
                      .++   ++.+++|+.|++++|.....              ........+....+.++.+..++   +             
T Consensus       141 ~l~---l~~l~~L~~L~l~~n~~~~~--------------~~~~~l~~L~~L~ls~n~l~~l~---l-------------  187 (457)
T 3bz5_A          141 EID---VSHNTQLTELDCHLNKKITK--------------LDVTPQTQLTTLDCSFNKITELD---V-------------  187 (457)
T ss_dssp             CCC---CTTCTTCCEEECTTCSCCCC--------------CCCTTCTTCCEEECCSSCCCCCC---C-------------
T ss_pred             eec---cccCCcCCEEECCCCCcccc--------------cccccCCcCCEEECCCCccceec---c-------------
Confidence            553   44555666666665532100              00000000111111111111111   0             


Q ss_pred             eecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhcc
Q psy12210        266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSY  344 (405)
Q Consensus       266 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~  344 (405)
                                               ...       .+++.|++++|.++.++....+.++.|+++ |++++++       
T Consensus       188 -------------------------~~l-------~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-------  228 (457)
T 3bz5_A          188 -------------------------SQN-------KLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-------  228 (457)
T ss_dssp             -------------------------TTC-------TTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-------
T ss_pred             -------------------------ccC-------CCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-------
Confidence                                     000       158888888888888865556788889988 8888865       


Q ss_pred             ccccccCCcc-ceEEecCCCCcccCcccccCCc-------cCceeecccCC
Q psy12210        345 ISNNFKRWTN-RSRRLEQNDITELPPKAFANYK-------RLRRIRLEQND  387 (405)
Q Consensus       345 ~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~-------~L~~L~L~~N~  387 (405)
                          +..+++ +.|++++|+++.++...+.++.       +|+.|++++|.
T Consensus       229 ----~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          229 ----VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             ----CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred             ----ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence                567788 8899999988888755444433       34444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=7.2e-22  Score=185.32  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=57.4

Q ss_pred             cCceeecC-CCCCCcCCCCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC
Q psy12210        302 ADGIVDCR-EKGLNKVPILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY  375 (405)
Q Consensus       302 ~l~~l~l~-~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l  375 (405)
                      +++.++++ +|.++.+|...+   ++|+.|+++ |+|+.+|        ...|.++++ +.+++  +.++.+|+  +.++
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp--------~~~~~~L~~L~~l~~--~~l~~lP~--l~~l  245 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--------SYGLENLKKLRARST--YNLKKLPT--LEKL  245 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC--------SSSCTTCCEEECTTC--TTCCCCCC--TTTC
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC--------hhhhccchHhhhccC--CCcCcCCC--chhC
Confidence            58888887 578999998765   588999999 9999999        666666655 44333  46888874  7889


Q ss_pred             ccCceeecccC
Q psy12210        376 KRLRRIRLEQN  386 (405)
Q Consensus       376 ~~L~~L~L~~N  386 (405)
                      ++|+.++++++
T Consensus       246 ~~L~~l~l~~~  256 (350)
T 4ay9_X          246 VALMEASLTYP  256 (350)
T ss_dssp             CSCCEEECSCH
T ss_pred             cChhhCcCCCC
Confidence            99999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=1.2e-21  Score=181.00  Aligned_cols=233  Identities=19%  Similarity=0.213  Sum_probs=184.7

Q ss_pred             ccccCCCcCcc--CCchhhccccccceEEccC-CcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcc
Q psy12210          2 PRTLNNNNLTY--LPDGVFAELFRLRTLRISE-NSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEF   78 (405)
Q Consensus         2 ~L~l~~n~i~~--l~~~~f~~l~~L~~L~l~~-n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~   78 (405)
                      .|+|++|+|++  ..+.+|.++++|++|++++ |.+++                                   .++. .+
T Consensus        54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~-----------------------------------~~p~-~l   97 (313)
T 1ogq_A           54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-----------------------------------PIPP-AI   97 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES-----------------------------------CCCG-GG
T ss_pred             EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc-----------------------------------cCCh-hH
Confidence            58999999997  5556899999999999995 88752                                   1111 11


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         79 KCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                                     .     .++|++|++++|.++...+..|.++++|++|++++|
T Consensus        98 ~-------------------------------------~-----l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           98 A-------------------------------------K-----LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             G-------------------------------------G-----CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             h-------------------------------------c-----CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence            0                                     0     158999999999999666667999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhccc-CCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELF-RLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS  237 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~-~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (405)
                      .++...|..|..+++|++|++++|.++...+..+..++ +|+.|++++|.+.                            
T Consensus       136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~----------------------------  187 (313)
T 1ogq_A          136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----------------------------  187 (313)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE----------------------------
T ss_pred             ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee----------------------------
Confidence            99987788899999999999999999954445677787 9999999999854                            


Q ss_pred             CCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC
Q psy12210        238 HIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP  317 (405)
Q Consensus       238 ~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p  317 (405)
                              ...+..+...                                              .|+.|++++|.++..+
T Consensus       188 --------~~~~~~~~~l----------------------------------------------~L~~L~Ls~N~l~~~~  213 (313)
T 1ogq_A          188 --------GKIPPTFANL----------------------------------------------NLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             --------EECCGGGGGC----------------------------------------------CCSEEECCSSEEEECC
T ss_pred             --------ccCChHHhCC----------------------------------------------cccEEECcCCcccCcC
Confidence                    1111122111                                              3889999999998765


Q ss_pred             CCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccC
Q psy12210        318 ILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELP  392 (405)
Q Consensus       318 ~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~  392 (405)
                      +..   .++++.|+++ |.+....         ..+..+++ +.|+|++|+|+...+..|..+++|+.|+|++|++++..
T Consensus       214 ~~~~~~l~~L~~L~L~~N~l~~~~---------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          214 SVLFGSDKNTQKIHLAKNSLAFDL---------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             GGGCCTTSCCSEEECCSSEECCBG---------GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CHHHhcCCCCCEEECCCCceeeec---------CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            433   3689999999 9998766         34788899 99999999999777778999999999999999999655


Q ss_pred             hhhcCCCccccC
Q psy12210        393 PKAFANYKRLRR  404 (405)
Q Consensus       393 ~~~f~~l~~L~~  404 (405)
                      +.. ..+++|++
T Consensus       285 p~~-~~l~~L~~  295 (313)
T 1ogq_A          285 PQG-GNLQRFDV  295 (313)
T ss_dssp             CCS-TTGGGSCG
T ss_pred             CCC-ccccccCh
Confidence            543 66666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.86  E-value=2.2e-21  Score=162.60  Aligned_cols=132  Identities=36%  Similarity=0.721  Sum_probs=124.3

Q ss_pred             CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210         95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL  174 (405)
Q Consensus        95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  174 (405)
                      ..||..|.|..+.++|++|+++++|..+++.++.|++++|.|+.+++..|.++++|+.|++++|.++.+++..|.++++|
T Consensus         1 ~~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L   80 (170)
T 3g39_A            1 MACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL   80 (170)
T ss_dssp             -CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence            36999999999999999999999999999999999999999999999899999999999999999999999889999999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcCC
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPR  226 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~~  226 (405)
                      ++|++++|+++.+++++|..+++|+.|++++|++.|+|. +.++..|+...+.
T Consensus        81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~  133 (170)
T 3g39_A           81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG  133 (170)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred             CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence            999999999999999999999999999999999999995 9999999887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=5.2e-21  Score=174.53  Aligned_cols=187  Identities=21%  Similarity=0.358  Sum_probs=149.1

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++.+|.++++|+.|++++|.+++..             .. ......+.+++++|.+..++.......
T Consensus        35 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~  100 (290)
T 1p9a_G           35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-------------VD-GTLPVLGTLDLSHNQLQSLPLLGQTLP  100 (290)
T ss_dssp             EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-------------CC-SCCTTCCEEECCSSCCSSCCCCTTTCT
T ss_pred             EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-------------CC-CCCCcCCEEECCCCcCCcCchhhccCC
Confidence            4677777777777777777888888888887776311             11 112224456667777766654221100


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC-C--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                                            .++.+++++|+++.+|.. +  .++|+.|++++|.++.+++..|..+++|+.|++++|
T Consensus       101 ----------------------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G          101 ----------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             ----------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ----------------------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence                                  238999999999999864 3  368999999999999999998999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP  225 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~  225 (405)
                      +++.+++..|..+++|+.|++++|+++.++..+|. +.+|+.+++.+|++.|+|.+.++..|+...+
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-SHLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc-cccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence            99999988899999999999999999999987655 6799999999999999999999999988754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=9.3e-22  Score=182.02  Aligned_cols=179  Identities=17%  Similarity=0.244  Sum_probs=137.1

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++++.|++++|.++.+++  +..+++|++|++++|.++.+++     .++|+.|++++|.++.++...   +++|+.|++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l  127 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYL  127 (317)
T ss_dssp             TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEEC
T ss_pred             CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEEC
Confidence            478888888888877664  7778888888888888877653     267888888888887776543   567888888


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ++|.+.                                    .+....+...                            
T Consensus       128 ~~N~l~------------------------------------~~~~~~~~~l----------------------------  143 (317)
T 3o53_A          128 ANNKIT------------------------------------MLRDLDEGCR----------------------------  143 (317)
T ss_dssp             CSSCCC------------------------------------SGGGBCTGGG----------------------------
T ss_pred             CCCCCC------------------------------------Cccchhhhcc----------------------------
Confidence            877643                                    2222222111                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC-C---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceE
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-L---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSR  357 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~-~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L  357 (405)
                                       .+|++|++++|.++.++.. +   .+.+++|+++ |.++.++        ..  ..+++ +.|
T Consensus       144 -----------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~--~~l~~L~~L  196 (317)
T 3o53_A          144 -----------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------GQ--VVFAKLKTL  196 (317)
T ss_dssp             -----------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------CC--CCCTTCCEE
T ss_pred             -----------------CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--------cc--cccccCCEE
Confidence                             1599999999999987533 2   3789999999 9999987        32  34888 999


Q ss_pred             EecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        358 RLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       358 ~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +|++|+|+.+++. |..+++|+.|+|++|++++++.. +..+++|++|
T Consensus       197 ~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L  242 (317)
T 3o53_A          197 DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHF  242 (317)
T ss_dssp             ECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEE
T ss_pred             ECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEE
Confidence            9999999999887 88899999999999999999864 7888877754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=2.8e-20  Score=186.09  Aligned_cols=86  Identities=17%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             cCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCc
Q psy12210        302 ADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLR  379 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~  379 (405)
                      +++.|++++|.++.+|. .+++++.|+++ |.+++++            ..+++ +.|+|++|+|+.++.    .+++|+
T Consensus       202 ~L~~L~L~~N~l~~l~~-~~~~L~~L~Ls~N~L~~lp------------~~l~~L~~L~Ls~N~L~~lp~----~~~~L~  264 (622)
T 3g06_A          202 ELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLP------------VLPSELKELMVSGNRLTSLPM----LPSGLL  264 (622)
T ss_dssp             TCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCSCCCC----CCTTCC
T ss_pred             hhhEEECcCCcccccCC-CCCCCCEEEccCCccCcCC------------CCCCcCcEEECCCCCCCcCCc----ccccCc
Confidence            69999999999999885 45889999999 9999876            34577 999999999999987    468999


Q ss_pred             eeecccCCCcccChhhcCCCccccCC
Q psy12210        380 RIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       380 ~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      .|+|++|+|+.+|. .|.++++|++|
T Consensus       265 ~L~Ls~N~L~~lp~-~l~~l~~L~~L  289 (622)
T 3g06_A          265 SLSVYRNQLTRLPE-SLIHLSSETTV  289 (622)
T ss_dssp             EEECCSSCCCSCCG-GGGGSCTTCEE
T ss_pred             EEeCCCCCCCcCCH-HHhhccccCEE
Confidence            99999999999976 48888888754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=2.8e-21  Score=179.61  Aligned_cols=207  Identities=16%  Similarity=0.181  Sum_probs=138.7

Q ss_pred             ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|+++.+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..+..+++|++|++++|.
T Consensus        84 ~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           84 VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACP  161 (328)
T ss_dssp             CEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCC-GGGGGCTTCCEEEEEEET
T ss_pred             eEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCc-HHHhcCcCCCEEECCCCC
Confidence            667777777777766543  467777777777775554 4666777777777777776553 456667777777777654


Q ss_pred             -CcccChhh--------hhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccc
Q psy12210        184 -LTYLPDGV--------FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC  254 (405)
Q Consensus       184 -l~~l~~~~--------f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~  254 (405)
                       +..++...        |..+++|+.|++++|.+.                                    .++.. +..
T Consensus       162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------------------~lp~~-l~~  204 (328)
T 4fcg_A          162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------------------SLPAS-IAN  204 (328)
T ss_dssp             TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------------------CCCGG-GGG
T ss_pred             CccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------------------cchHh-hcC
Confidence             33444321        223667777777766532                                    12211 111


Q ss_pred             cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-e
Q psy12210        255 SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-V  331 (405)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n  331 (405)
                      .                                             .+|++|++++|.++.+|..+  .++|++|+++ |
T Consensus       205 l---------------------------------------------~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          205 L---------------------------------------------QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC  239 (328)
T ss_dssp             C---------------------------------------------TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred             C---------------------------------------------CCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence            0                                             15888888888888887654  3688888888 7


Q ss_pred             cceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       332 ~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      .+.+..        +..|.++++ +.|+|++|.+....+..|.++++|+.|+|++|.+.+..+..|.++++|++
T Consensus       240 ~~~~~~--------p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          240 TALRNY--------PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             TTCCBC--------CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             cchhhh--------HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            776655        577888888 88999888777666666888888999999888866655566888877764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.1e-20  Score=166.95  Aligned_cols=188  Identities=20%  Similarity=0.370  Sum_probs=151.6

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .++++++.++.+|...   .++++.|++++|.+++..+            .........+.+++++|.+..++...|...
T Consensus        18 ~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   82 (251)
T 3m19_A           18 EVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSD------------ATFRGLTKLTWLNLDYNQLQTLSAGVFDDL   82 (251)
T ss_dssp             EEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCT------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             EEecCCCCccccCCCC---CCCCCEEEccCCCcCccCH------------hHhcCcccCCEEECCCCcCCccCHhHhccC
Confidence            4677888888887643   2578888888888764221            111112234556677777777666554322


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      ..                     ++.+++++|.++.+|...   .++|+.|++++|.++.+++..|.++++|+.|++++|
T Consensus        83 ~~---------------------L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  141 (251)
T 3m19_A           83 TE---------------------LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN  141 (251)
T ss_dssp             TT---------------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             Cc---------------------CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence            21                     389999999999998654   368999999999999999988999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccc-cCchHHHHHHhhcC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICD-CHLSWLHRWLKRYP  225 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~-~~l~~~~~~~~~~~  225 (405)
                      .++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|++.|+ |++.++..|+....
T Consensus       142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~  209 (251)
T 3m19_A          142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS  209 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSG
T ss_pred             cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcc
Confidence            99999988899999999999999999999998999999999999999999999 99999999987654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=9.9e-22  Score=181.43  Aligned_cols=194  Identities=11%  Similarity=0.103  Sum_probs=139.6

Q ss_pred             ceEEcCCCCcc-ccCCCC----CCCccEEEccCCCCCCCCcccccCC-----CCCcEEecCCCcceeecccccCCCCCCC
Q psy12210        106 GIVDCREKGLN-KVPILL----PEATTELRLEQNDITELPPKAFANY-----KRLRRIDLSKNQISKVAVDAFQGLKSLT  175 (405)
Q Consensus       106 ~~l~~~~n~l~-~lp~~~----~~~L~~L~L~~n~i~~l~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~~~l~~L~  175 (405)
                      +.+++++|+++ .+|..+    .++++.|++++|.++.++ ..+..+     ++|++|++++|.+..+++..|.++++|+
T Consensus        98 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           98 QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             cEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            77777777776 466543    357888888888888873 456655     7888888888888888777788888888


Q ss_pred             EEEccCCcCccc---Chh-hhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCc
Q psy12210        176 SLTLNNNNLTYL---PDG-VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE  251 (405)
Q Consensus       176 ~L~l~~n~l~~l---~~~-~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~  251 (405)
                      +|++++|++...   +.. .|..+++|+.|++++|.+..                                 +..+....
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~---------------------------------~~~~~~~~  223 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET---------------------------------PSGVCSAL  223 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC---------------------------------HHHHHHHH
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc---------------------------------hHHHHHHH
Confidence            888888876542   211 23677888888888877541                                 00111111


Q ss_pred             ccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCC-CCC---CCCceEE
Q psy12210        252 FKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP-ILL---PEATTEL  327 (405)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p-~~~---~~~l~~L  327 (405)
                      +...                                             .+|++|++++|.++..+ ...   .+++++|
T Consensus       224 ~~~l---------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  258 (312)
T 1wwl_A          224 AAAR---------------------------------------------VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL  258 (312)
T ss_dssp             HHTT---------------------------------------------CCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred             HhcC---------------------------------------------CCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence            1000                                             05889999999998865 222   3789999


Q ss_pred             EEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCccc
Q psy12210        328 TYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITEL  391 (405)
Q Consensus       328 ~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i  391 (405)
                      +++ |+++.++         ..+.  ++ +.|+|++|+|+.++.  +..+++|+.|+|++|++++.
T Consensus       259 ~Ls~N~l~~ip---------~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          259 NLSFTGLKQVP---------KGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             ECTTSCCSSCC---------SSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred             ECCCCccChhh---------hhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence            999 9999887         3333  67 999999999999954  88999999999999998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.6e-20  Score=174.51  Aligned_cols=197  Identities=19%  Similarity=0.181  Sum_probs=144.2

Q ss_pred             ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccC---------CCCCC
Q psy12210        106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQ---------GLKSL  174 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~---------~l~~L  174 (405)
                      +++++++|.++.+|..+  .++|++|++++|.++.++. .+.++++|+.|++++|.+....|..+.         ++++|
T Consensus       107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L  185 (328)
T 4fcg_A          107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL  185 (328)
T ss_dssp             SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTC
T ss_pred             CEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCC
Confidence            44555555555555433  2578999999999997765 588899999999998766655555444         48899


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccc
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC  254 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~  254 (405)
                      ++|++++|.++.++.. +..+++|+.|++++|.+.                                    .++.. +..
T Consensus       186 ~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~------------------------------------~l~~~-l~~  227 (328)
T 4fcg_A          186 QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLS------------------------------------ALGPA-IHH  227 (328)
T ss_dssp             CEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCC------------------------------------CCCGG-GGG
T ss_pred             CEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCC------------------------------------cCchh-hcc
Confidence            9999999999988764 788999999999998753                                    12221 111


Q ss_pred             cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC-CCCC--CCCceEEEEE-
Q psy12210        255 SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV-PILL--PEATTELTYM-  330 (405)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~-p~~~--~~~l~~L~l~-  330 (405)
                      .                                             .+|++|++++|++... |..+  .++|++|+++ 
T Consensus       228 l---------------------------------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          228 L---------------------------------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             C---------------------------------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred             C---------------------------------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence            1                                             1588899998776554 4433  4689999999 


Q ss_pred             ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210        331 VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPK  394 (405)
Q Consensus       331 n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~  394 (405)
                      |.+.+..        +..+.++++ +.|+|++|.+....|..+.++++|+.+++..+.+..+...
T Consensus       263 n~~~~~~--------p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~~  319 (328)
T 4fcg_A          263 CSNLLTL--------PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH  319 (328)
T ss_dssp             CTTCCBC--------CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC----
T ss_pred             CCchhhc--------chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhhh
Confidence            7766554        578999999 9999999987776667799999999999999888777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.1e-20  Score=167.44  Aligned_cols=188  Identities=18%  Similarity=0.315  Sum_probs=158.4

Q ss_pred             ceEEcCCCCccccCCC-C--CCCccEEEccCCC-CCCCCcccccCCCCCcEEecCC-CcceeecccccCCCCCCCEEEcc
Q psy12210        106 GIVDCREKGLNKVPIL-L--PEATTELRLEQND-ITELPPKAFANYKRLRRIDLSK-NQISKVAVDAFQGLKSLTSLTLN  180 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~  180 (405)
                      +.+++++|+++.+|.. +  .++++.|++++|. ++.+++..|.++++|+.|++++ |.++.+++..|.++++|++|+++
T Consensus        34 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~  113 (239)
T 2xwt_C           34 QTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF  113 (239)
T ss_dssp             CEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEE
T ss_pred             cEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCC
Confidence            7788888888887763 3  3689999999997 9999998899999999999999 99999998899999999999999


Q ss_pred             CCcCcccChhhhhcccCCc---EEEeecC-ccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccC
Q psy12210        181 NNNLTYLPDGVFAELFRLR---TLRISEN-SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG  256 (405)
Q Consensus       181 ~n~l~~l~~~~f~~l~~L~---~L~l~~N-~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~  256 (405)
                      +|.++.++.  |..+++|+   .|++++| .+                                    ..++...|... 
T Consensus       114 ~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l------------------------------------~~i~~~~~~~l-  154 (239)
T 2xwt_C          114 NTGLKMFPD--LTKVYSTDIFFILEITDNPYM------------------------------------TSIPVNAFQGL-  154 (239)
T ss_dssp             EECCCSCCC--CTTCCBCCSEEEEEEESCTTC------------------------------------CEECTTTTTTT-
T ss_pred             CCCCccccc--cccccccccccEEECCCCcch------------------------------------hhcCcccccch-
Confidence            999999886  78889998   9999998 53                                    33333333211 


Q ss_pred             ccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCc-eeecCCCCCCcCCCCCC--CCceEEEEE-ec
Q psy12210        257 SSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG-IVDCREKGLNKVPILLP--EATTELTYM-VS  332 (405)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~-~l~l~~n~l~~~p~~~~--~~l~~L~l~-n~  332 (405)
                                                                  .+++ .+++++|+++.+|...+  +.++.|+++ |+
T Consensus       155 --------------------------------------------~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~  190 (239)
T 2xwt_C          155 --------------------------------------------CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK  190 (239)
T ss_dssp             --------------------------------------------BSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred             --------------------------------------------hcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence                                                        1588 99999999999987765  578999999 95


Q ss_pred             -ceeeeccchhccccccccCC-cc-ceEEecCCCCcccCcccccCCccCceeecccCC
Q psy12210        333 -IDRVDKVLLYSYISNNFKRW-TN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND  387 (405)
Q Consensus       333 -i~~i~~~~~~~~~~~~~~~l-~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~  387 (405)
                       ++.++        +..|.++ ++ +.|++++|+|+.+++.   .+++|+.|+++++.
T Consensus       191 ~l~~i~--------~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          191 YLTVID--------KDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW  237 (239)
T ss_dssp             TCCEEC--------TTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred             CcccCC--------HHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence             99998        7889999 99 9999999999999876   46788999998763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.85  E-value=1.5e-20  Score=158.03  Aligned_cols=133  Identities=29%  Similarity=0.664  Sum_probs=125.7

Q ss_pred             CCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210         94 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS  173 (405)
Q Consensus        94 ~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  173 (405)
                      ...||..|+|..+.++|++++++++|..+++++++|++++|.|+.+++..|.++++|+.|++++|.++.+++..|.++++
T Consensus         3 ~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~   82 (174)
T 2r9u_A            3 SAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ   82 (174)
T ss_dssp             CCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence            46899999999999999999999999999999999999999999999989999999999999999999999888899999


Q ss_pred             CCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcCC
Q psy12210        174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYPR  226 (405)
Q Consensus       174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~~  226 (405)
                      |+.|++++|+++.+++++|..+++|+.|++++|++.|+|. +.++..|+.....
T Consensus        83 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~  136 (174)
T 2r9u_A           83 LTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTS  136 (174)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred             hhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhccc
Confidence            9999999999999999889999999999999999999996 9999999876543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=6.1e-21  Score=176.13  Aligned_cols=245  Identities=15%  Similarity=0.135  Sum_probs=176.1

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccc-cchhhHHHHHHhhCCCccccccccCCCcccCCcccc-cCCCcc-
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC-DCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD-IPEHEF-   78 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-l~~~~~-   78 (405)
                      .|++++|++ .+|.. +...  |+.|++++|.++. ..+.......+...     .....+.++++++.+.. ++...| 
T Consensus        47 ~l~l~~n~l-~~p~~-~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           47 YLLKRVDTE-ADLGQ-FTDI--IKSLSLKRLTVRAARIPSRILFGALRVL-----GISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             THHHHCCTT-CCCHH-HHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHH-----TTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             eEeeccccc-ccHHH-HHHH--HhhcccccccccCCCcCHHHHHHHHHhc-----CcCCccEEEccCCcccchhHHHHHH
Confidence            467788888 66654 3333  8888888888843 11111111000000     01123456677777763 443332 


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC-------CCCccEEEccCCCCCCCCcccccCCCCCc
Q psy12210         79 KCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL-------PEATTELRLEQNDITELPPKAFANYKRLR  151 (405)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~-------~~~L~~L~L~~n~i~~l~~~~~~~l~~L~  151 (405)
                      ....                     .++.+++++|.++.+|..+       ++++++|++++|.++.+++..|.++++|+
T Consensus       118 ~~l~---------------------~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A          118 ATGP---------------------DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             CCSC---------------------CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred             hcCC---------------------CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence            1111                     1399999999999887533       27899999999999999988999999999


Q ss_pred             EEecCCCcceeec--cc--ccCCCCCCCEEEccCCcCcc---cChhhhhcccCCcEEEeecCccccccCchHHHHHHhhc
Q psy12210        152 RIDLSKNQISKVA--VD--AFQGLKSLTSLTLNNNNLTY---LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRY  224 (405)
Q Consensus       152 ~L~ls~n~l~~~~--~~--~~~~l~~L~~L~l~~n~l~~---l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~  224 (405)
                      +|++++|.+.+..  +.  .+..+++|++|++++|.++.   ++...|..+++|+.|++++|.+.               
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------------  241 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR---------------  241 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC---------------
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC---------------
Confidence            9999999976531  22  23889999999999999994   44456678899999999999865               


Q ss_pred             CCCCCccccCCCCCCCCCcccccC-CCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q psy12210        225 PRLGLYTKCFAPSHIKGQNILDIP-EHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCAD  303 (405)
Q Consensus       225 ~~~~~~~~~~~~~~l~~~~l~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l  303 (405)
                                           ... ...+...                                             .+|
T Consensus       242 ---------------------~~~~~~~~~~l---------------------------------------------~~L  255 (312)
T 1wwl_A          242 ---------------------DAAGAPSCDWP---------------------------------------------SQL  255 (312)
T ss_dssp             ---------------------SSCCCSCCCCC---------------------------------------------TTC
T ss_pred             ---------------------cccchhhhhhc---------------------------------------------CCC
Confidence                                 111 1111000                                             159


Q ss_pred             ceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210        304 GIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL  367 (405)
Q Consensus       304 ~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i  367 (405)
                      ++|++++|.++.+|..+++++++|+++ |++++++         . +..+++ +.|+|++|+|+..
T Consensus       256 ~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p---------~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          256 NSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNP---------S-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCC---------C-TTTSCEEEEEECTTCTTTCC
T ss_pred             CEEECCCCccChhhhhccCCceEEECCCCCCCCCh---------h-HhhCCCCCEEeccCCCCCCC
Confidence            999999999999998888999999999 9999988         3 889999 9999999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=2.4e-20  Score=168.69  Aligned_cols=179  Identities=22%  Similarity=0.282  Sum_probs=131.1

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      +++++|++++|.++.++  .+.++++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++
T Consensus        63 ~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            46788888888887764  4778888888888888888887777788888888888888888888777788888888888


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ++|.+.                                    .++...+...                            
T Consensus       141 ~~n~l~------------------------------------~~~~~~~~~l----------------------------  156 (272)
T 3rfs_A          141 AHNQLQ------------------------------------SLPKGVFDKL----------------------------  156 (272)
T ss_dssp             CSSCCC------------------------------------CCCTTTTTTC----------------------------
T ss_pred             CCCccC------------------------------------ccCHHHhccC----------------------------
Confidence            887643                                    2222222111                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEE
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRR  358 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~  358 (405)
                                       .+|++|++++|.++.++...   .++++.|+++ |++.+++        +..|..+++ +.|+
T Consensus       157 -----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          157 -----------------TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP--------DGVFDRLTSLQYIW  211 (272)
T ss_dssp             -----------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEE
T ss_pred             -----------------ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC--------HHHHhCCcCCCEEE
Confidence                             14778888888888776544   3678888888 8888887        667888888 8888


Q ss_pred             ecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210        359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK  400 (405)
Q Consensus       359 L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~  400 (405)
                      +++|.+.       ..+++|+.+++..|.+++..+..++.+.
T Consensus       212 l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          212 LHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             ccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            8888765       2356788888888888766555555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=2.2e-19  Score=157.97  Aligned_cols=113  Identities=37%  Similarity=0.650  Sum_probs=104.2

Q ss_pred             CCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210         96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT  175 (405)
Q Consensus        96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  175 (405)
                      ..-..|.|..+.++|++++++++|..+++++++|++++|.|+.+++..|.++++|+.|++++|.++.+++..|.++++|+
T Consensus        12 ~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             CCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            34466789899999999999999999999999999999999999888899999999999999999999888899999999


Q ss_pred             EEEccCCcCcccChhhhhcccCCcEEEeecCcc
Q psy12210        176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSF  208 (405)
Q Consensus       176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l  208 (405)
                      .|++++|.++.+++..|..+++|+.|++++|.+
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence            999999999999998889899999999988874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=3.6e-19  Score=163.88  Aligned_cols=169  Identities=24%  Similarity=0.346  Sum_probs=99.7

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++++.|++++|.++.+++  +..+++|+.|++++|.++.++  .+..+++|++|++++|.++.++.  +..+++|+.|++
T Consensus        63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEEC
Confidence            356666666666666554  566666666666666666553  35566666666666666666543  556666666666


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ++|.+.                                    .++.  +...                            
T Consensus       137 ~~n~l~------------------------------------~~~~--l~~l----------------------------  150 (308)
T 1h6u_A          137 DLNQIT------------------------------------NISP--LAGL----------------------------  150 (308)
T ss_dssp             CSSCCC------------------------------------CCGG--GGGC----------------------------
T ss_pred             CCCccC------------------------------------cCcc--ccCC----------------------------
Confidence            666532                                    0100  1000                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                                       .+|++|++++|.++.++. ...++|+.|+++ |.+++++        +  +..+++ +.|+|+
T Consensus       151 -----------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--------~--l~~l~~L~~L~L~  203 (308)
T 1h6u_A          151 -----------------TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--------P--LASLPNLIEVHLK  203 (308)
T ss_dssp             -----------------TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--------G--GGGCTTCCEEECT
T ss_pred             -----------------CCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcCh--------h--hcCCCCCCEEEcc
Confidence                             035666666666665543 123566666776 6666665        2  566666 777777


Q ss_pred             CCCCcccCcccccCCccCceeecccCCCcccCh
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                      +|+|+.+++  +..+++|+.|+|++|.++..+.
T Consensus       204 ~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          204 NNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            777776663  6667777777777777666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3.1e-19  Score=176.54  Aligned_cols=191  Identities=23%  Similarity=0.290  Sum_probs=148.8

Q ss_pred             CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        105 DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       105 ~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      .+.+++++|+++.+|..++++++.|++++|.|+.++    ..+++|+.|++++|.++.++.  +.+  +|+.|++++|.+
T Consensus        61 L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           61 FSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             CSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCC
T ss_pred             ccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcC
Confidence            489999999999999988899999999999999888    347899999999999999764  654  999999999999


Q ss_pred             cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210        185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK  264 (405)
Q Consensus       185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~  264 (405)
                      +.++.    .+++|+.|++++|.+.                                    .++. .+            
T Consensus       133 ~~lp~----~l~~L~~L~Ls~N~l~------------------------------------~lp~-~l------------  159 (571)
T 3cvr_A          133 TMLPE----LPALLEYINADNNQLT------------------------------------MLPE-LP------------  159 (571)
T ss_dssp             SCCCC----CCTTCCEEECCSSCCS------------------------------------CCCC-CC------------
T ss_pred             CCCCC----cCccccEEeCCCCccC------------------------------------cCCC-cC------------
Confidence            99886    5799999999999854                                    1221 00            


Q ss_pred             ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhc
Q psy12210        265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYS  343 (405)
Q Consensus       265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~  343 (405)
                                                          .+|++|++++|.++.+|. +.++|+.|+++ |.|+.+|.     
T Consensus       160 ------------------------------------~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~~lp~-----  197 (571)
T 3cvr_A          160 ------------------------------------TSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLESLPA-----  197 (571)
T ss_dssp             ------------------------------------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCC-----
T ss_pred             ------------------------------------CCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCCchhh-----
Confidence                                                048888888888888887 66788888888 88888872     


Q ss_pred             cccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCC
Q psy12210        344 YISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANY  399 (405)
Q Consensus       344 ~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l  399 (405)
                      +...-+...+. +.|+|++|+|+.+|...+. +++|+.|+|++|.+++..+..|..+
T Consensus       198 ~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          198 VPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC--------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             HHHhhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            00011122244 7888999999988876444 8899999999998887766655544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.80  E-value=1.2e-18  Score=157.36  Aligned_cols=176  Identities=24%  Similarity=0.363  Sum_probs=152.9

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++++.|++.+|.++.++.  +..+++|+.|++++|.++.+.  .+..+++|++|++++|.++.+++..|..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            589999999999998874  788999999999999999863  6889999999999999999999998999999999999


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ++|.+.                                    .++...+...                            
T Consensus       117 ~~n~l~------------------------------------~~~~~~~~~l----------------------------  132 (272)
T 3rfs_A          117 VENQLQ------------------------------------SLPDGVFDKL----------------------------  132 (272)
T ss_dssp             TTSCCC------------------------------------CCCTTTTTTC----------------------------
T ss_pred             CCCcCC------------------------------------ccCHHHhccC----------------------------
Confidence            998753                                    2232222111                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEE
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRR  358 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~  358 (405)
                                       .+|++|++++|.++.+|...   .++|+.|+++ |++++++        +..|+.+++ +.|+
T Consensus       133 -----------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          133 -----------------TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP--------EGVFDKLTQLKDLR  187 (272)
T ss_dssp             -----------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEE
T ss_pred             -----------------CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC--------HHHhcCCccCCEEE
Confidence                             15999999999999998754   3789999999 9999998        777899999 9999


Q ss_pred             ecCCCCcccCcccccCCccCceeecccCCCcccC
Q psy12210        359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELP  392 (405)
Q Consensus       359 L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~  392 (405)
                      +++|+++.+++..|..+++|+.|+|++|.+....
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence            9999999999998999999999999999887544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.1e-19  Score=177.77  Aligned_cols=202  Identities=18%  Similarity=0.229  Sum_probs=134.5

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEee
Q psy12210        125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS  204 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~  204 (405)
                      +++.|++++|.++.+++..|..+++|+.|++++|.++++.+  |..+++|+.|++++|.++.+++     .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            56666666666666666666666666666666666666554  6666666666666666666553     2566666666


Q ss_pred             cCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCC
Q psy12210        205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEK  284 (405)
Q Consensus       205 ~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (405)
                      +|.+....               ......+..+.+.++.+..+....+...                             
T Consensus       108 ~N~l~~~~---------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------------------------  143 (487)
T 3oja_A          108 NNNISRVS---------------CSRGQGKKNIYLANNKITMLRDLDEGCR-----------------------------  143 (487)
T ss_dssp             SSCCCCEE---------------ECCCSSCEEEECCSSCCCSGGGBCGGGG-----------------------------
T ss_pred             CCcCCCCC---------------ccccCCCCEEECCCCCCCCCCchhhcCC-----------------------------
Confidence            66644100               0000111111222222333322222111                             


Q ss_pred             CCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEE
Q psy12210        285 PTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRR  358 (405)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~  358 (405)
                                      .+|++|++++|.++.+++ .+   .+.|+.|+++ |.+++++        +  +..+++ +.|+
T Consensus       144 ----------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--------~--~~~l~~L~~L~  197 (487)
T 3oja_A          144 ----------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--------G--QVVFAKLKTLD  197 (487)
T ss_dssp             ----------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--------C--CCCCTTCCEEE
T ss_pred             ----------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--------c--cccCCCCCEEE
Confidence                            169999999999998643 33   3799999999 9999987        3  335888 9999


Q ss_pred             ecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        359 LEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       359 L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      |++|+|+.+++. |..+++|+.|+|++|.|+++|.. +..+++|++|
T Consensus       198 Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L  242 (487)
T 3oja_A          198 LSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHF  242 (487)
T ss_dssp             CCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEE
T ss_pred             CCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEE
Confidence            999999999987 88899999999999999999875 7777777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=3e-19  Score=164.63  Aligned_cols=85  Identities=18%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCccee---ecc-cccCCCCCCCEEEccCCcCcccChh---hhhccc
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK---VAV-DAFQGLKSLTSLTLNNNNLTYLPDG---VFAELF  196 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~---~~~-~~~~~l~~L~~L~l~~n~l~~l~~~---~f~~l~  196 (405)
                      +++++|++++|.++.+++..|.++++|+.|++++|.+.+   +.+ ..+..+++|++|++++|.++.++..   .++.++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            356666666666666665556666666666666665543   211 2224555666666666666544432   234455


Q ss_pred             CCcEEEeecCcc
Q psy12210        197 RLRTLRISENSF  208 (405)
Q Consensus       197 ~L~~L~l~~N~l  208 (405)
                      +|+.|++++|.+
T Consensus       225 ~L~~L~Ls~N~l  236 (310)
T 4glp_A          225 QPHSLDLSHNSL  236 (310)
T ss_dssp             CCSSEECTTSCC
T ss_pred             CCCEEECCCCCC
Confidence            666666665553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.1e-18  Score=164.37  Aligned_cols=202  Identities=22%  Similarity=0.253  Sum_probs=155.4

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccc-cccccCCCcccCCcccccCCCcccc
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGL-YTKCFAPSHIKGQNILDIPEHEFKC   80 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~l~~~~~~~   80 (405)
                      ++++++++++.+|...   ...++.|+|++|.|++..+            .... .....+.+++++|.+..++...|..
T Consensus        22 ~l~c~~~~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~------------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   86 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSL---PSYTALLDLSHNNLSRLRA------------EWTPTRLTNLHSLLLSHNHLNFISSEAFVP   86 (361)
T ss_dssp             EEECCSSCCSSCCSSC---CTTCSEEECCSSCCCEECT------------TSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             EEEeCCCCcCccCccC---CCCCCEEECCCCCCCccCh------------hhhhhcccccCEEECCCCcCCccChhhccC
Confidence            4788899999988743   3458899999999874211            1111 2233566788888888888766643


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCC
Q psy12210         81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSK  157 (405)
Q Consensus        81 ~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~  157 (405)
                      ...                     ++.+++++|.++.+|...   .++|+.|+|++|.|+.+++..|.++++|+.|++++
T Consensus        87 l~~---------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~  145 (361)
T 2xot_A           87 VPN---------------------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ  145 (361)
T ss_dssp             CTT---------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCC---------------------CCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence            322                     399999999999998753   36899999999999999988999999999999999


Q ss_pred             Ccceeeccccc---CCCCCCCEEEccCCcCcccChhhhhcccC--CcEEEeecCccccccCchHH-HHHHhhcC----CC
Q psy12210        158 NQISKVAVDAF---QGLKSLTSLTLNNNNLTYLPDGVFAELFR--LRTLRISENSFICDCHLSWL-HRWLKRYP----RL  227 (405)
Q Consensus       158 n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~l~~~~f~~l~~--L~~L~l~~N~l~~~~~l~~~-~~~~~~~~----~~  227 (405)
                      |.++.+++..|   ..+++|+.|++++|.++.++...|..++.  ++.|++.+|++.|+|.+.++ ..|.....    ..
T Consensus       146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~  225 (361)
T 2xot_A          146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDF  225 (361)
T ss_dssp             SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTT
T ss_pred             CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhcc
Confidence            99999988777   56999999999999999999988998887  48999999999999999886 45654332    11


Q ss_pred             CCccccCCCCCC
Q psy12210        228 GLYTKCFAPSHI  239 (405)
Q Consensus       228 ~~~~~~~~~~~l  239 (405)
                      .....|..|..+
T Consensus       226 ~~~~~C~~p~~~  237 (361)
T 2xot_A          226 QEDLYCMHSKKL  237 (361)
T ss_dssp             GGGCEEESSSCC
T ss_pred             CcCCEeCCChHH
Confidence            233455555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=2.6e-18  Score=169.97  Aligned_cols=163  Identities=20%  Similarity=0.309  Sum_probs=134.9

Q ss_pred             ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc
Q psy12210        106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT  185 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  185 (405)
                      +.+++++|.++.+| ..+++|+.|++++|.|+.++.  +.+  +|+.|++++|.++.+++    .+++|+.|++++|.++
T Consensus        83 ~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           83 TVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLT  153 (571)
T ss_dssp             SEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred             CEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccC
Confidence            89999999999999 777899999999999999886  555  99999999999999765    6789999999999999


Q ss_pred             ccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccc
Q psy12210        186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI  265 (405)
Q Consensus       186 ~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~  265 (405)
                      .++.    .+++|+.|++++|.+.                                    .++.  +. .          
T Consensus       154 ~lp~----~l~~L~~L~Ls~N~L~------------------------------------~lp~--l~-~----------  180 (571)
T 3cvr_A          154 MLPE----LPTSLEVLSVRNNQLT------------------------------------FLPE--LP-E----------  180 (571)
T ss_dssp             CCCC----CCTTCCEEECCSSCCS------------------------------------CCCC--CC-T----------
T ss_pred             cCCC----cCCCcCEEECCCCCCC------------------------------------Ccch--hh-C----------
Confidence            9886    4789999999999754                                    2222  21 0          


Q ss_pred             eecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCc-------eEEEEE-ecceeee
Q psy12210        266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEAT-------TELTYM-VSIDRVD  337 (405)
Q Consensus       266 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l-------~~L~l~-n~i~~i~  337 (405)
                                                          +|+.|++++|.|+.+|. ++.++       +.|+++ |.|+.+|
T Consensus       181 ------------------------------------~L~~L~Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp  223 (571)
T 3cvr_A          181 ------------------------------------SLEALDVSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITHIP  223 (571)
T ss_dssp             ------------------------------------TCCEEECCSSCCSSCCC-CC--------CCEEEECCSSCCCCCC
T ss_pred             ------------------------------------CCCEEECcCCCCCchhh-HHHhhhcccccceEEecCCCcceecC
Confidence                                                58999999999999988 66688       999999 9999998


Q ss_pred             ccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210        338 KVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK  376 (405)
Q Consensus       338 ~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~  376 (405)
                               ..+..+++ +.|+|++|+|+...+..|..++
T Consensus       224 ---------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          224 ---------ENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             ---------GGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ---------HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence                     45556899 9999999999987777676543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.3e-18  Score=149.72  Aligned_cols=163  Identities=21%  Similarity=0.365  Sum_probs=136.8

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      +++.++++++.+|...   .++|+.|++++|.|++                                    +....|...
T Consensus        23 ~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~------------------------------------~~~~~~~~l   63 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGI---PTNAQILYLHDNQITK------------------------------------LEPGVFDSL   63 (229)
T ss_dssp             EEECTTSCCSSCCSCC---CTTCSEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred             EeEccCCCcCccCCCC---CCCCCEEEcCCCccCc------------------------------------cCHHHhhCc
Confidence            4788999999999853   4889999999999862                                    111111111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|+++.+|...   .++|+.|++++|.|+.+++..|..+++|+.|++++|
T Consensus        64 ~---------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N  122 (229)
T 3e6j_A           64 I---------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN  122 (229)
T ss_dssp             T---------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             c---------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence            0                     1278888888888888654   368999999999999999988999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP  225 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~  225 (405)
                      .++.++ ..+..+++|+.|++++|+++.+++..|..+++|+.|++.+|++.|+|. +.++..|+....
T Consensus       123 ~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~  189 (229)
T 3e6j_A          123 KLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT  189 (229)
T ss_dssp             CCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG
T ss_pred             cccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc
Confidence            999875 568899999999999999999999899999999999999999999996 899998887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=6.1e-18  Score=155.60  Aligned_cols=179  Identities=18%  Similarity=0.304  Sum_probs=153.2

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++++.|+++++.++.++  .+..+++|+.|++++|.++.+++  +..+++|++|++++|.++.++  .+..+++|+.|++
T Consensus        41 ~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEEC
Confidence            48999999999999987  48899999999999999999876  899999999999999999986  4888999999999


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ++|.+.                                    .++.  +...                            
T Consensus       115 ~~n~l~------------------------------------~~~~--l~~l----------------------------  128 (308)
T 1h6u_A          115 TSTQIT------------------------------------DVTP--LAGL----------------------------  128 (308)
T ss_dssp             TTSCCC------------------------------------CCGG--GTTC----------------------------
T ss_pred             CCCCCC------------------------------------Cchh--hcCC----------------------------
Confidence            999854                                    1111  1111                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                                       .+|++|++++|.++.++. ...++|+.|+++ |++++++        +  +..+++ +.|+++
T Consensus       129 -----------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--------~--l~~l~~L~~L~l~  181 (308)
T 1h6u_A          129 -----------------SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--------P--LANLSKLTTLKAD  181 (308)
T ss_dssp             -----------------TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--------G--GTTCTTCCEEECC
T ss_pred             -----------------CCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCCh--------h--hcCCCCCCEEECC
Confidence                             159999999999998864 234799999999 9999987        3  889999 999999


Q ss_pred             CCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +|+|+.+++  +..+++|+.|+|++|+++++++  +..+++|++|
T Consensus       182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  222 (308)
T 1h6u_A          182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (308)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             CCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEE
Confidence            999999986  8889999999999999999985  7888888754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.76  E-value=9e-18  Score=141.52  Aligned_cols=113  Identities=37%  Similarity=0.700  Sum_probs=108.0

Q ss_pred             CCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCE
Q psy12210         97 CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS  176 (405)
Q Consensus        97 ~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  176 (405)
                      ||..|+|..+.++|++++++.+|..++++++.|++++|.++.+++..|.++++|+.|++++|.++.+++..|.++++|+.
T Consensus         1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            89999999999999999999999999999999999999999999988999999999999999999999888999999999


Q ss_pred             EEccCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        177 LTLNNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       177 L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      |++++|.++.+++..|..+++|+.|++++|.+.
T Consensus        81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence            999999999999988999999999999999753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=4.8e-19  Score=166.90  Aligned_cols=261  Identities=15%  Similarity=0.137  Sum_probs=168.9

Q ss_pred             CccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcccc
Q psy12210          1 MPRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC   80 (405)
Q Consensus         1 ~~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~   80 (405)
                      |-+.+++|++++..+..+...++|+.|++++|.+++... ..+...+...+                             
T Consensus         1 ~~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~-----------------------------   50 (362)
T 3goz_A            1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST-VELIQAFANTP-----------------------------   50 (362)
T ss_dssp             CEEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTCC-----------------------------
T ss_pred             CccccccccchHHHHHHHhCCCCceEEEccCCCCChHHH-HHHHHHHHhCC-----------------------------
Confidence            457899999999888766666779999999999864222 12222221111                             


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCC-C-------CCCCccEEEccCCCCCCCCcccc----cCC-
Q psy12210         81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-L-------LPEATTELRLEQNDITELPPKAF----ANY-  147 (405)
Q Consensus        81 ~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~-~-------~~~~L~~L~L~~n~i~~l~~~~~----~~l-  147 (405)
                                            |..+.+++++|.++.... .       .++++++|++++|.++...+..+    ..+ 
T Consensus        51 ----------------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~  108 (362)
T 3goz_A           51 ----------------------ASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP  108 (362)
T ss_dssp             ----------------------TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred             ----------------------CceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCC
Confidence                                  012455555555554321 1       12578888888888887776533    333 


Q ss_pred             CCCcEEecCCCcceeeccccc----CC-CCCCCEEEccCCcCcccChhhh----hccc-CCcEEEeecCccccccCchHH
Q psy12210        148 KRLRRIDLSKNQISKVAVDAF----QG-LKSLTSLTLNNNNLTYLPDGVF----AELF-RLRTLRISENSFICDCHLSWL  217 (405)
Q Consensus       148 ~~L~~L~ls~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~l~~~~f----~~l~-~L~~L~l~~N~l~~~~~l~~~  217 (405)
                      ++|++|++++|.++...+..+    .. .++|++|++++|.++......+    ..++ +|+.|++++|.+..       
T Consensus       109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-------  181 (362)
T 3goz_A          109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS-------  181 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-------
T ss_pred             CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch-------
Confidence            788888888888877665433    33 3578888888888875554333    3344 78888888877541       


Q ss_pred             HHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy12210        218 HRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPH  297 (405)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  297 (405)
                                                   .....+...          +.                              
T Consensus       182 -----------------------------~~~~~l~~~----------l~------------------------------  192 (362)
T 3goz_A          182 -----------------------------KNCAELAKF----------LA------------------------------  192 (362)
T ss_dssp             -----------------------------SCHHHHHHH----------HH------------------------------
T ss_pred             -----------------------------hhHHHHHHH----------HH------------------------------
Confidence                                         111111000          00                              


Q ss_pred             CccccCceeecCCCCCCc-----CCCCC---CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210        298 PCRCADGIVDCREKGLNK-----VPILL---PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL  367 (405)
Q Consensus       298 ~~~~~l~~l~l~~n~l~~-----~p~~~---~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i  367 (405)
                      .+.++|++|++++|.++.     ++..+   ++.+++|+++ |.+...+...+    ...++.+++ +.|+|++|++..+
T Consensus       193 ~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l----~~~~~~l~~L~~L~L~~n~l~~i  268 (362)
T 3goz_A          193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL----KLLKDSLKHLQTVYLDYDIVKNM  268 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH----HHTTTTTTTCSEEEEEHHHHTTC
T ss_pred             hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH----HHHHhcCCCccEEEeccCCcccc
Confidence            000159999999999987     33322   4689999999 99988762211    134677888 9999999996665


Q ss_pred             Ccc-------cccCCccCceeecccCCCcccCh
Q psy12210        368 PPK-------AFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       368 ~~~-------~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                      .+.       .+..+++|+.||+++|++....+
T Consensus       269 ~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          269 SKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             CHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            543       46778999999999999887643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=3.3e-17  Score=141.78  Aligned_cols=164  Identities=24%  Similarity=0.432  Sum_probs=135.6

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .++.++++++.++...   .++|+.|++++|.+++                                    ++...|...
T Consensus        11 ~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~------------------------------------~~~~~~~~l   51 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI---PAQTTYLDLETNSLKS------------------------------------LPNGVFDEL   51 (208)
T ss_dssp             EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCC------------------------------------CCTTTTTTC
T ss_pred             EEEecCCCccCCCCCC---CCCCcEEEcCCCccCc------------------------------------CChhhhccc
Confidence            4678899999998743   5689999999998862                                    222222111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                      .                     .++.+++++|+++.+|...   .++|++|++++|.++.+++..|.++++|+.|++++|
T Consensus        52 ~---------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           52 T---------------------SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             T---------------------TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             c---------------------cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC
Confidence            0                     1278888888888888653   368999999999999999888999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccC-chHHHHHHhhcC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCH-LSWLHRWLKRYP  225 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~-l~~~~~~~~~~~  225 (405)
                      .++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|++.|+|. ++++..+.....
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS  178 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCT
T ss_pred             cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCC
Confidence            9999998889999999999999999999999889999999999999999999986 788776655444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.75  E-value=1.1e-18  Score=160.93  Aligned_cols=204  Identities=14%  Similarity=0.072  Sum_probs=144.3

Q ss_pred             CCccEEEccCCCCCCCCcccc--cCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccChhhhhcccC
Q psy12210        124 EATTELRLEQNDITELPPKAF--ANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR  197 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~--~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~  197 (405)
                      ++++.|++++|.+++..+..+  ..+++|++|++++|.++...+    ..+..+++|++|++++|.+..+++..|+.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            469999999999998777767  889999999999999886432    34557889999999999999999888999999


Q ss_pred             CcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCC
Q psy12210        198 LRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPY  277 (405)
Q Consensus       198 L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (405)
                      |+.|++++|.+...      ..  ............+..+.+.++.+..++.....-                       
T Consensus       171 L~~L~Ls~N~l~~~------~~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l-----------------------  219 (310)
T 4glp_A          171 LTSLDLSDNPGLGE------RG--LMAALCPHKFPAIQNLALRNTGMETPTGVCAAL-----------------------  219 (310)
T ss_dssp             CCEEECCSCTTCHH------HH--HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH-----------------------
T ss_pred             CCEEECCCCCCccc------hh--hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH-----------------------
Confidence            99999999985410      00  000111112223444445444443322210000                       


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC-CCCC-----CCCceEEEEE-ecceeeeccchhcccccccc
Q psy12210        278 NSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV-PILL-----PEATTELTYM-VSIDRVDKVLLYSYISNNFK  350 (405)
Q Consensus       278 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~-p~~~-----~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~  350 (405)
                                  +.       ...+|++|++++|.++.+ |..+     ++.|++|+++ |+++.++        . .+.
T Consensus       220 ------------~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp--------~-~~~  271 (310)
T 4glp_A          220 ------------AA-------AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP--------K-GLP  271 (310)
T ss_dssp             ------------HH-------HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC--------S-CCC
T ss_pred             ------------Hh-------cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh--------h-hhc
Confidence                        00       001588999999999887 5433     2589999999 9999887        3 232


Q ss_pred             CCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcc
Q psy12210        351 RWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       351 ~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~  390 (405)
                        ++ +.|+|++|+|+.++.  +..+++|+.|+|++|+++.
T Consensus       272 --~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 --AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             --SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             --CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence              57 999999999998854  6788999999999998875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.75  E-value=1.1e-17  Score=156.65  Aligned_cols=142  Identities=28%  Similarity=0.478  Sum_probs=126.4

Q ss_pred             CCCCc-cccCceEEcCCC-CccccCCCCC--CCccEEEccC-CCCCCCCcccccCCCCCcEEecCCCcceeecccccCCC
Q psy12210         97 CPHPC-RCADGIVDCREK-GLNKVPILLP--EATTELRLEQ-NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGL  171 (405)
Q Consensus        97 ~p~~~-~c~~~~l~~~~n-~l~~lp~~~~--~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l  171 (405)
                      ||..| .|....++|+++ +++++|. ++  ++|+.|+|++ |.|+.+++..|.++++|+.|+|++|.++++++..|.++
T Consensus         1 cp~~c~~C~~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l   79 (347)
T 2ifg_A            1 CPDACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (347)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CCCcCccccCCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC
Confidence            89999 999999999998 9999999 76  4699999996 99999999999999999999999999999999999999


Q ss_pred             CCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCC--CCccccCCCCCCC
Q psy12210        172 KSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIK  240 (405)
Q Consensus       172 ~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~  240 (405)
                      ++|++|++++|+|+.++++.|..++ |+.|++.+|++.|+|.+.|+..|.......  .....|..+..+.
T Consensus        80 ~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~  149 (347)
T 2ifg_A           80 PRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA  149 (347)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS
T ss_pred             cCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHh
Confidence            9999999999999999999888776 999999999999999999999998765443  2345565555433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=6.9e-18  Score=156.80  Aligned_cols=256  Identities=13%  Similarity=0.105  Sum_probs=164.6

Q ss_pred             ceEEcCCCCcc--ccCCCCCCCccEEEccCCCCCCCCcccccC--------CCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210        106 GIVDCREKGLN--KVPILLPEATTELRLEQNDITELPPKAFAN--------YKRLRRIDLSKNQISKVAVDAFQGLKSLT  175 (405)
Q Consensus       106 ~~l~~~~n~l~--~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~--------l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  175 (405)
                      +.+++++|.+.  ..+....+.+..+.+..+   .++..+|.+        +.+|+.+++++ .++.+...+|.++++|+
T Consensus        52 ~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           52 KVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             CEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             eEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            77777777777  444333222334444444   677788888        99999999999 99999999999999999


Q ss_pred             EEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCC-ccccCCCC-CCCCCcccccCCCccc
Q psy12210        176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGL-YTKCFAPS-HIKGQNILDIPEHEFK  253 (405)
Q Consensus       176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~l~~l~~~~~~  253 (405)
                      .++++.|.+..+++.+|..+.++..+....+...           ......... -..|.... .+.-.....++...+.
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-----------~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~  196 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-----------RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK  196 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH-----------HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcchhhh-----------hccccccccccccccccceeEEecCCCcHHHHHhh
Confidence            9999999999999999998777776665543210           000000000 00000000 0000000000000000


Q ss_pred             c-cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEE
Q psy12210        254 C-SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTY  329 (405)
Q Consensus       254 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l  329 (405)
                      . ....  ..  .+     ..+.   .. +.......+. ..|     .+|+.+++++|+++.+|...|   ++|+.+++
T Consensus       197 ~~~~~~--~~--~~-----l~~~---~~-l~~~~~~~l~-~~~-----~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          197 AGLQPR--DI--NF-----LTIE---GK-LDNADFKLIR-DYM-----PNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             TTCCGG--GC--SE-----EEEE---EC-CCHHHHHHHH-HHC-----TTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCcc--cc--ce-----EEEe---ee-ecHHHHHHHH-Hhc-----CCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            0 0000  00  00     0000   00 0000000000 001     169999999999999998887   47899999


Q ss_pred             E-ecceeeeccchhccccccccCCcc-c-eEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        330 M-VSIDRVDKVLLYSYISNNFKRWTN-R-SRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~-~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      . | +..|+        ...|.++.+ + .+++++ .++.|++.+|.+|++|+.+++++|.++.|+..+|.++++|+.+
T Consensus       258 ~~n-i~~I~--------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          258 PHN-LKTIG--------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             CTT-CCEEC--------TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred             Ccc-cceeh--------HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence            9 6 99999        899999999 9 999998 8999999999999999999999999999999999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.73  E-value=7.3e-19  Score=170.98  Aligned_cols=87  Identities=13%  Similarity=0.087  Sum_probs=58.1

Q ss_pred             cCceeecCCCCCCcCC-----CCC--CCCceEEEEE-ecceeeeccchhccccccccC-Ccc-ceEEecCCCCcc----c
Q psy12210        302 ADGIVDCREKGLNKVP-----ILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKR-WTN-RSRRLEQNDITE----L  367 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p-----~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~-l~~-~~L~L~~N~i~~----i  367 (405)
                      +++.|++++|.++...     ..+  .+.+++|+++ |.+.......+    ...+.. .++ +.|+|++|+|+.    .
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l----~~~l~~~~~~L~~L~L~~n~i~~~~~~~  389 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL----CQGLGQPGSVLRVLWLADCDVSDSSCSS  389 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH----HHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH----HHHHcCCCCceEEEECCCCCCChhhHHH
Confidence            5888888888887542     111  2688889998 88776541110    111222 557 889999998884    2


Q ss_pred             CcccccCCccCceeecccCCCcccC
Q psy12210        368 PPKAFANYKRLRRIRLEQNDITELP  392 (405)
Q Consensus       368 ~~~~~~~l~~L~~L~L~~N~l~~i~  392 (405)
                      .+..+..+++|+.|+|++|+++...
T Consensus       390 l~~~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          390 LAATLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             HHHHHHhCCCccEEECCCCCCCHHH
Confidence            2344677889999999999887653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=1.2e-19  Score=176.63  Aligned_cols=320  Identities=13%  Similarity=0.127  Sum_probs=169.0

Q ss_pred             ccccCCCcCccCCchh-hccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcccc
Q psy12210          2 PRTLNNNNLTYLPDGV-FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC   80 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~-f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~   80 (405)
                      .|+|++|+++...... |..+++|+.|++++|.++.. +...+...+...+.       .+.++++++.+.+.....+..
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~l~~~l~~~~~-------L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPA-------LAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCTT-------CCEEECTTCCCHHHHHHHHHH
T ss_pred             ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH-HHHHHHHHHHhCCC-------cCEEeCCCCcCChHHHHHHHH
Confidence            5899999998776544 88999999999999998631 22233333333222       234556666555432211110


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccc-----cCCCC--CCCccEEEccCCCCCCCCcccc-----cCCC
Q psy12210         81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK-----VPILL--PEATTELRLEQNDITELPPKAF-----ANYK  148 (405)
Q Consensus        81 ~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~-----lp~~~--~~~L~~L~L~~n~i~~l~~~~~-----~~l~  148 (405)
                      . .               ..+.|..+.+++++|.++.     +|..+  .++++.|++++|.++......+     ...+
T Consensus        79 ~-l---------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           79 G-L---------------QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             T-T---------------CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             H-H---------------hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence            0 0               0011223666666666652     23222  2456666666666654332222     1234


Q ss_pred             CCcEEecCCCcceeec----ccccCCCCCCCEEEccCCcCcccChhhhhc-----ccCCcEEEeecCccccccCchHHHH
Q psy12210        149 RLRRIDLSKNQISKVA----VDAFQGLKSLTSLTLNNNNLTYLPDGVFAE-----LFRLRTLRISENSFICDCHLSWLHR  219 (405)
Q Consensus       149 ~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~-----l~~L~~L~l~~N~l~~~~~l~~~~~  219 (405)
                      +|++|++++|.++...    +..+..+++|++|++++|.++......+..     .++|+.|++++|.+... ....+..
T Consensus       143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-~~~~l~~  221 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD-NCRDLCG  221 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT-HHHHHHH
T ss_pred             cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH-HHHHHHH
Confidence            5666666666665432    233444566666666666655443333321     34666666666654411 0111222


Q ss_pred             HHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy12210        220 WLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPC  299 (405)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  299 (405)
                      .+...+       .+....+.++.+.......+..                                 ..+       ..
T Consensus       222 ~l~~~~-------~L~~L~Ls~n~l~~~~~~~l~~---------------------------------~~~-------~~  254 (461)
T 1z7x_W          222 IVASKA-------SLRELALGSNKLGDVGMAELCP---------------------------------GLL-------HP  254 (461)
T ss_dssp             HHHHCT-------TCCEEECCSSBCHHHHHHHHHH---------------------------------HHT-------ST
T ss_pred             HHHhCC-------CccEEeccCCcCChHHHHHHHH---------------------------------HHh-------cC
Confidence            211111       1111222222221111000000                                 000       01


Q ss_pred             cccCceeecCCCCCCc-----CCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccC--
Q psy12210        300 RCADGIVDCREKGLNK-----VPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP--  368 (405)
Q Consensus       300 ~~~l~~l~l~~n~l~~-----~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~--  368 (405)
                      ..++++|++++|.++.     ++..+  .+.+++|+++ |.+.......+.   .......++ +.|++++|.++...  
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~---~~l~~~~~~L~~L~L~~n~l~~~~~~  331 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC---ETLLEPGCQLESLWVKSCSFTAACCS  331 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH---HHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH---HHhccCCccceeeEcCCCCCchHHHH
Confidence            1269999999999987     33322  4689999999 988755411110   111122357 99999999998764  


Q ss_pred             --cccccCCccCceeecccCCCcccChhhc
Q psy12210        369 --PKAFANYKRLRRIRLEQNDITELPPKAF  396 (405)
Q Consensus       369 --~~~~~~l~~L~~L~L~~N~l~~i~~~~f  396 (405)
                        +..+..+++|+.|+|++|.+++.....+
T Consensus       332 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  361 (461)
T 1z7x_W          332 HFSSVLAQNRFLLELQISNNRLEDAGVREL  361 (461)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred             HHHHHHhhCCCccEEEccCCccccccHHHH
Confidence              3345667999999999999988765433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.72  E-value=2.4e-18  Score=162.11  Aligned_cols=240  Identities=16%  Similarity=0.101  Sum_probs=168.7

Q ss_pred             ccccCCCcCccCCc----hhhcccc-ccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCC
Q psy12210          2 PRTLNNNNLTYLPD----GVFAELF-RLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH   76 (405)
Q Consensus         2 ~L~l~~n~i~~l~~----~~f~~l~-~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~   76 (405)
                      .|+|++|+|+.+++    .+|.+++ +|+.|++++|.+++... ..+...+...                          
T Consensus        26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~--------------------------   78 (362)
T 3goz_A           26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAI--------------------------   78 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTS--------------------------
T ss_pred             EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhcc--------------------------
Confidence            68999999999998    7888999 99999999999974322 1221111110                          


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCC--------CCCCccEEEccCCCCCCCCccccc---
Q psy12210         77 EFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL--------LPEATTELRLEQNDITELPPKAFA---  145 (405)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~--------~~~~L~~L~L~~n~i~~l~~~~~~---  145 (405)
                       +                        ..++.+++++|.++..+..        .+++++.|++++|.++..+...+.   
T Consensus        79 -~------------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  133 (362)
T 3goz_A           79 -P------------------------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF  133 (362)
T ss_dssp             -C------------------------TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             -C------------------------CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence             0                        0126677777776654422        126899999999999998876543   


Q ss_pred             -C-CCCCcEEecCCCcceeecc----cccCCCC-CCCEEEccCCcCcccChhhhhcc-----cCCcEEEeecCccccccC
Q psy12210        146 -N-YKRLRRIDLSKNQISKVAV----DAFQGLK-SLTSLTLNNNNLTYLPDGVFAEL-----FRLRTLRISENSFICDCH  213 (405)
Q Consensus       146 -~-l~~L~~L~ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~l~~~~f~~l-----~~L~~L~l~~N~l~~~~~  213 (405)
                       . .++|++|++++|.++....    ..+...+ +|++|++++|.++......+...     ++|+.|++++|.+...  
T Consensus       134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~--  211 (362)
T 3goz_A          134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK--  211 (362)
T ss_dssp             TTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS--
T ss_pred             HhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh--
Confidence             3 3699999999999985443    3344554 99999999999998887555544     6999999999986510  


Q ss_pred             chHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCC
Q psy12210        214 LSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEP  293 (405)
Q Consensus       214 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  293 (405)
                                                   ....+... +...                                      
T Consensus       212 -----------------------------~~~~l~~~-l~~~--------------------------------------  223 (362)
T 3goz_A          212 -----------------------------SYAELAYI-FSSI--------------------------------------  223 (362)
T ss_dssp             -----------------------------CHHHHHHH-HHHS--------------------------------------
T ss_pred             -----------------------------HHHHHHHH-HhcC--------------------------------------
Confidence                                         01111111 1000                                      


Q ss_pred             CCCCCccccCceeecCCCCCCcCCC-------CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCC
Q psy12210        294 SCPHPCRCADGIVDCREKGLNKVPI-------LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDI  364 (405)
Q Consensus       294 ~~~~~~~~~l~~l~l~~n~l~~~p~-------~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i  364 (405)
                            ..+|++|++++|.++..+.       ...+.++.|+++ |.+..+....+..+ ...+..+++ +.||+++|+|
T Consensus       224 ------~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l-~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          224 ------PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL-GAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             ------CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH-HTTSTTCCEEEEECTTSCBC
T ss_pred             ------CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH-HHHhccCCceEEEecCCCcC
Confidence                  0159999999999998654       234789999999 99777764433333 457888999 9999999999


Q ss_pred             cccCcc
Q psy12210        365 TELPPK  370 (405)
Q Consensus       365 ~~i~~~  370 (405)
                      ....+.
T Consensus       297 ~~~~~~  302 (362)
T 3goz_A          297 HPSHSI  302 (362)
T ss_dssp             CGGGCH
T ss_pred             CCcchH
Confidence            877543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=5.6e-17  Score=147.92  Aligned_cols=171  Identities=17%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++++.|++++|.++.++.  +..+++|+.|++++|.++.+++  +..+++|++|++++|.++.++.  +..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence            356777777777776643  5666777777777777776654  6667777777777777776653  566777777777


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ++|.+.                                    .++  .+...                            
T Consensus       120 ~~n~i~------------------------------------~~~--~l~~l----------------------------  133 (291)
T 1h6t_A          120 EHNGIS------------------------------------DIN--GLVHL----------------------------  133 (291)
T ss_dssp             TTSCCC------------------------------------CCG--GGGGC----------------------------
T ss_pred             CCCcCC------------------------------------CCh--hhcCC----------------------------
Confidence            776643                                    110  01000                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                                       .+|+.|++++|.++.++. ...++|+.|+++ |++.+++        +  +..+++ +.|+++
T Consensus       134 -----------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--------~--l~~l~~L~~L~L~  186 (291)
T 1h6t_A          134 -----------------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--------P--LAGLTKLQNLYLS  186 (291)
T ss_dssp             -----------------TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--------G--GTTCTTCCEEECC
T ss_pred             -----------------CCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--------h--hcCCCccCEEECC
Confidence                             046667777777666531 123577777777 7777766        3  667777 777777


Q ss_pred             CCCCcccCcccccCCccCceeecccCCCcccChhh
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQNDITELPPKA  395 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~  395 (405)
                      +|+|+.++.  +..+++|+.|++++|+++..+...
T Consensus       187 ~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~~~  219 (291)
T 1h6t_A          187 KNHISDLRA--LAGLKNLDVLELFSQECLNKPINH  219 (291)
T ss_dssp             SSCCCBCGG--GTTCTTCSEEEEEEEEEECCCEEC
T ss_pred             CCcCCCChh--hccCCCCCEEECcCCcccCCcccc
Confidence            777777753  677777777777777777665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=3.5e-16  Score=131.73  Aligned_cols=102  Identities=31%  Similarity=0.638  Sum_probs=95.2

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++..|..+++|+.|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A           52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence            58999999999999999988899999999999999999999888999999999999999999999988999999999999


Q ss_pred             ecCccccccC-chHHHHHHhhcC
Q psy12210        204 SENSFICDCH-LSWLHRWLKRYP  225 (405)
Q Consensus       204 ~~N~l~~~~~-l~~~~~~~~~~~  225 (405)
                      ++|++.|+|. +.++..|+....
T Consensus       132 ~~N~~~~~~~~l~~l~~~~~~~~  154 (177)
T 2o6r_A          132 HTNPWDCSCPRIDYLSRWLNKNS  154 (177)
T ss_dssp             CSSCBCCCHHHHHHHHHHHHHTG
T ss_pred             cCCCeeccCccHHHHHHHHhhCc
Confidence            9999999997 888888877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=1.9e-16  Score=158.17  Aligned_cols=80  Identities=29%  Similarity=0.485  Sum_probs=62.9

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++|+.|+|++|.++.+++  +..+++|+.|+|++|.+..++  .+..+++|+.|++++|.++.++.  +..+++|+.|++
T Consensus        65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L~~L~L  138 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCGG--GGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCcc--ccCCCccCEEEC
Confidence            478888888888888776  778888888888888887764  47788888888888888887743  677888888888


Q ss_pred             ecCccc
Q psy12210        204 SENSFI  209 (405)
Q Consensus       204 ~~N~l~  209 (405)
                      ++|.+.
T Consensus       139 s~N~l~  144 (605)
T 1m9s_A          139 GNNKIT  144 (605)
T ss_dssp             CSSCCC
T ss_pred             CCCccC
Confidence            887644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.7e-17  Score=149.10  Aligned_cols=168  Identities=16%  Similarity=0.209  Sum_probs=115.1

Q ss_pred             CccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEee
Q psy12210        125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS  204 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~  204 (405)
                      .+..++++++.++.++  .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.++.+++  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4566677777777666  3666777777777777777664  46677777777777777777765  6777777777777


Q ss_pred             cCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCC
Q psy12210        205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEK  284 (405)
Q Consensus       205 ~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  284 (405)
                      +|.+.                                    .++....                                
T Consensus        94 ~N~l~------------------------------------~l~~~~~--------------------------------  105 (263)
T 1xeu_A           94 RNRLK------------------------------------NLNGIPS--------------------------------  105 (263)
T ss_dssp             SSCCS------------------------------------CCTTCCC--------------------------------
T ss_pred             CCccC------------------------------------CcCcccc--------------------------------
Confidence            77643                                    1111000                                


Q ss_pred             CCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC-CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecC
Q psy12210        285 PTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQ  361 (405)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~-~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~  361 (405)
                                      .+|+.|++++|+++.++.. ..++|+.|+++ |++++++          .++.+++ +.|+|++
T Consensus       106 ----------------~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~----------~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A          106 ----------------ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV----------MLGFLSKLEVLDLHG  159 (263)
T ss_dssp             ----------------SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG----------GGGGCTTCCEEECTT
T ss_pred             ----------------CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh----------HHccCCCCCEEECCC
Confidence                            0477777777777776531 23677778887 7777765          4667777 8888888


Q ss_pred             CCCcccCcccccCCccCceeecccCCCcccChh
Q psy12210        362 NDITELPPKAFANYKRLRRIRLEQNDITELPPK  394 (405)
Q Consensus       362 N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~  394 (405)
                      |+|+.+  ..+..+++|+.|++++|.++..+..
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCCccc
Confidence            888877  4477788888888888887776644

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.67  E-value=2.6e-15  Score=142.66  Aligned_cols=97  Identities=21%  Similarity=0.325  Sum_probs=43.7

Q ss_pred             ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|+++.+|...+  .+++.+.+. +.++.|+..+|.++.+|+.++++.+ ++.+...+|.+ .+|+.+.+ .+.
T Consensus       183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~  258 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFVYAGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNG  258 (401)
T ss_dssp             CEEECTTSCCSEECTTTTTTCCCSEEECC-TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETT
T ss_pred             CeeecCCCcceEechhhEeecccCEEEeC-CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCC
Confidence            444444444444443322  344444444 2244444444444444444444432 34444444444 34444444 233


Q ss_pred             CcccChhhhhcccCCcEEEeecC
Q psy12210        184 LTYLPDGVFAELFRLRTLRISEN  206 (405)
Q Consensus       184 l~~l~~~~f~~l~~L~~L~l~~N  206 (405)
                      ++.++..+|..+++|+.+.+.+|
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~  281 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGS  281 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESS
T ss_pred             ccEEChhHhhCCCCCCEEEeCCc
Confidence            44444444444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.66  E-value=5.3e-18  Score=161.13  Aligned_cols=190  Identities=17%  Similarity=0.159  Sum_probs=128.4

Q ss_pred             CCccEEEccCCCCCCC----CcccccCCCCCcEEecCCCcceeecccccCC----C---------CCCCEEEccCCcCcc
Q psy12210        124 EATTELRLEQNDITEL----PPKAFANYKRLRRIDLSKNQISKVAVDAFQG----L---------KSLTSLTLNNNNLTY  186 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~----l---------~~L~~L~l~~n~l~~  186 (405)
                      ++|++|++++|.++..    .+..+.++++|+.|++++|.++...+..+..    +         ++|++|++++|.++.
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            5788888888888873    2235677888888888888887544333332    3         788888888888863


Q ss_pred             --cCh--hhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccc
Q psy12210        187 --LPD--GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETR  262 (405)
Q Consensus       187 --l~~--~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~  262 (405)
                        ++.  ..+..+++|+.|++++|.+...    .                           +..+....+...       
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----g---------------------------~~~l~~~~l~~~-------  215 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPE----G---------------------------IEHLLLEGLAYC-------  215 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHH----H---------------------------HHHHHHTTGGGC-------
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHh----H---------------------------HHHHHHHHhhcC-------
Confidence              221  3466778888888888875410    0                           000000011000       


Q ss_pred             ccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCC-----cCCCCC--CCCceEEEEE-ecce
Q psy12210        263 SKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN-----KVPILL--PEATTELTYM-VSID  334 (405)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-----~~p~~~--~~~l~~L~l~-n~i~  334 (405)
                                                            .+|++|++++|.++     .+|..+  .++|++|+++ |.+.
T Consensus       216 --------------------------------------~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          216 --------------------------------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             --------------------------------------TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             --------------------------------------CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence                                                  15889999999984     444333  4689999999 9988


Q ss_pred             eeeccchhccccccc--cCCcc-ceEEecCCCCcc-----cCcccccCCccCceeecccCCCcccCh
Q psy12210        335 RVDKVLLYSYISNNF--KRWTN-RSRRLEQNDITE-----LPPKAFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       335 ~i~~~~~~~~~~~~~--~~l~~-~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                      ......+    +..+  ..+++ +.|+|++|+|+.     ++...+.++++|+.|+|++|+++...+
T Consensus       258 ~~~~~~l----~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          258 ARGAAAV----VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHH----HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhhHHHH----HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            7531100    2344  33888 999999999998     665544778999999999999998773

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.66  E-value=1.6e-16  Score=132.93  Aligned_cols=105  Identities=31%  Similarity=0.613  Sum_probs=98.4

Q ss_pred             CCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcc
Q psy12210        293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPK  370 (405)
Q Consensus       293 ~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~  370 (405)
                      +.||..|.|..+.+++++|.++++|..+++.+++|+++ |+|++++        +..|.++++ +.|+|++|+|+.+++.
T Consensus         1 ~~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~~   72 (170)
T 3g39_A            1 MACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLE--------PGVFDRLTQLTRLDLDNNQLTVLPAG   72 (170)
T ss_dssp             -CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC--------TTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             CcCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccC--------hhhhcCcccCCEEECCCCCcCccChh
Confidence            36999999999999999999999999999999999999 9999998        788999999 9999999999999999


Q ss_pred             cccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        371 AFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       371 ~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      .|.++++|+.|+|++|+|+++++..|.++++|++|
T Consensus        73 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence            99999999999999999999999889999988764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=4.9e-16  Score=141.65  Aligned_cols=96  Identities=26%  Similarity=0.378  Sum_probs=43.9

Q ss_pred             ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      +.+++++|.++.++. .-.++|+.|++++|.++.++.  +..+++|+.|++++|.++.+  ..+..+++|+.|++++|.+
T Consensus        71 ~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l  146 (291)
T 1h6t_A           71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI  146 (291)
T ss_dssp             CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCC
T ss_pred             CEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcC
Confidence            344444444444332 112344555555555544332  44455555555555555444  2244445555555555555


Q ss_pred             cccChhhhhcccCCcEEEeecCc
Q psy12210        185 TYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       185 ~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      +.++  .+..+++|+.|++++|.
T Consensus       147 ~~~~--~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A          147 TDIT--VLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             CCCG--GGGGCTTCSEEECCSSC
T ss_pred             Ccch--hhccCCCCCEEEccCCc
Confidence            5441  24445555555555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=7.1e-16  Score=129.35  Aligned_cols=106  Identities=25%  Similarity=0.565  Sum_probs=100.2

Q ss_pred             CCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc
Q psy12210        292 EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP  369 (405)
Q Consensus       292 ~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~  369 (405)
                      ...||..|.|..+.+++++++++.+|..+++.++.|+++ |+|.+++        +..|.++++ +.|+|++|+|+.+++
T Consensus         3 ~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~i~~   74 (174)
T 2r9u_A            3 SAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE--------PGVFDHLVNLQQLYFNSNKLTAIPT   74 (174)
T ss_dssp             CCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccC--------HHHhcCCcCCCEEECCCCCCCccCh
Confidence            457999999999999999999999999999999999999 9999998        788999999 999999999999999


Q ss_pred             ccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        370 KAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       370 ~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      ..|.++++|+.|+|++|+|+++++..|.++++|++|
T Consensus        75 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           75 GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             hHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence            989999999999999999999999889999988764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.4e-16  Score=148.31  Aligned_cols=204  Identities=13%  Similarity=0.079  Sum_probs=121.4

Q ss_pred             ceEEcCCCCccc--cCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCC-cceee-cccccCCCCCCCEEEc
Q psy12210        106 GIVDCREKGLNK--VPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKN-QISKV-AVDAFQGLKSLTSLTL  179 (405)
Q Consensus       106 ~~l~~~~n~l~~--lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~l  179 (405)
                      +.+++++|.++.  +|..+  .++|+.|++++|.++...+..+.++++|++|++++| .++.. .+..+.++++|++|++
T Consensus        96 ~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B           96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence            566666666543  33221  246777777777666544455666777777777776 45532 2334556667777777


Q ss_pred             cCC-cCccc-Chhhhhccc-CCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccC
Q psy12210        180 NNN-NLTYL-PDGVFAELF-RLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSG  256 (405)
Q Consensus       180 ~~n-~l~~l-~~~~f~~l~-~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~  256 (405)
                      ++| .++.. .+..+..++ +|+.|++++|.+...                                -..++. .+... 
T Consensus       176 ~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~--------------------------------~~~l~~-~~~~~-  221 (336)
T 2ast_B          176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ--------------------------------KSDLST-LVRRC-  221 (336)
T ss_dssp             CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC--------------------------------HHHHHH-HHHHC-
T ss_pred             CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC--------------------------------HHHHHH-HHhhC-
Confidence            777 66642 133456666 777777776632100                                000000 00000 


Q ss_pred             ccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCC-CCc-CCCCC--CCCceEEEEE-e
Q psy12210        257 SSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKG-LNK-VPILL--PEATTELTYM-V  331 (405)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~-l~~-~p~~~--~~~l~~L~l~-n  331 (405)
                                                                  .+|+.|++++|. ++. .+..+  .++|++|+++ |
T Consensus       222 --------------------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          222 --------------------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             --------------------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             --------------------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence                                                        058899999988 553 23222  3789999999 7


Q ss_pred             cceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCC-ccCceeecccCCCcccChhhcCC
Q psy12210        332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANY-KRLRRIRLEQNDITELPPKAFAN  398 (405)
Q Consensus       332 ~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l-~~L~~L~L~~N~l~~i~~~~f~~  398 (405)
                      .  .+...+     ...++.+++ +.|++++|    ++...+..+ .++..|++++|+++++.+..+++
T Consensus       258 ~--~~~~~~-----~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          258 Y--DIIPET-----LLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             T--TCCGGG-----GGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             C--CCCHHH-----HHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            5  232111     235778899 99999998    444445554 45888889999999988776654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=4.9e-15  Score=132.90  Aligned_cols=164  Identities=15%  Similarity=0.225  Sum_probs=132.2

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .+++++|.+++++.  +..+++|+.|++++|.++..             +.+ ......+.+++++|.+.+++.  +...
T Consensus        23 ~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l-------------~~l-~~l~~L~~L~L~~N~i~~~~~--l~~l   84 (263)
T 1xeu_A           23 KQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL-------------AGM-QFFTNLKELHLSHNQISDLSP--LKDL   84 (263)
T ss_dssp             HHHHTCSCTTSEEC--HHHHTTCSEEECTTSCCCCC-------------TTG-GGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred             HHHhcCCCcccccc--hhhcCcCcEEECcCCCcccc-------------hHH-hhCCCCCEEECCCCccCCChh--hccC
Confidence            46788999998873  78999999999999998732             211 112234567788888887765  2211


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                      .                     .++.+++++|+++.+|.....+++.|++++|.++.++  .+..+++|+.|++++|.++
T Consensus        85 ~---------------------~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           85 T---------------------KLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             S---------------------SCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCC
T ss_pred             C---------------------CCCEEECCCCccCCcCccccCcccEEEccCCccCCCh--hhcCcccccEEECCCCcCC
Confidence            1                     1389999999999998655589999999999999986  4899999999999999999


Q ss_pred             eecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcccc
Q psy12210        162 KVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC  210 (405)
Q Consensus       162 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~  210 (405)
                      .++  .+..+++|+.|++++|.++.+  ..+..+++|+.|++++|++.+
T Consensus       142 ~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          142 SIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             BCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            985  588999999999999999998  458899999999999999763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=2.5e-14  Score=135.96  Aligned_cols=223  Identities=17%  Similarity=0.188  Sum_probs=156.7

Q ss_pred             cCceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccC
Q psy12210        104 ADGIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN  181 (405)
Q Consensus       104 ~~~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~  181 (405)
                      .++.+.+..+ ++.++..-+  .+|+.+.+.. .++.+...+|.++.+|+.+++++|.++.++..+|. ..+|+.+.+..
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~  212 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV  212 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence            3467776554 777775433  4677888874 77888888888888888888888888888877777 47888888874


Q ss_pred             CcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccc
Q psy12210        182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMET  261 (405)
Q Consensus       182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~  261 (405)
                       .+..++..+|..+++|+.+.+..+-                                     ..+....|.......  
T Consensus       213 -~l~~I~~~aF~~~~~L~~l~l~~~l-------------------------------------~~I~~~aF~~~~L~~--  252 (401)
T 4fdw_A          213 -TLKEIGSQAFLKTSQLKTIEIPENV-------------------------------------STIGQEAFRESGITT--  252 (401)
T ss_dssp             -TCCEECTTTTTTCTTCCCEECCTTC-------------------------------------CEECTTTTTTCCCSE--
T ss_pred             -chheehhhHhhCCCCCCEEecCCCc-------------------------------------cCccccccccCCccE--
Confidence             4888888888888888888876542                                     222222222110000  


Q ss_pred             cccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCC-----cCCCCCC---CCceEEEEEecc
Q psy12210        262 RSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLN-----KVPILLP---EATTELTYMVSI  333 (405)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~-----~~p~~~~---~~l~~L~l~n~i  333 (405)
                          +         .+ ...+..++..+|....       +|+.+++.++.+.     .++...|   ++|+.+.+.+.+
T Consensus       253 ----i---------~l-p~~i~~I~~~aF~~c~-------~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i  311 (401)
T 4fdw_A          253 ----V---------KL-PNGVTNIASRAFYYCP-------ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI  311 (401)
T ss_dssp             ----E---------EE-ETTCCEECTTTTTTCT-------TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTC
T ss_pred             ----E---------Ee-CCCccEEChhHhhCCC-------CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCce
Confidence                0         00 0112222233332222       6888988887665     5666666   477888888668


Q ss_pred             eeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCc
Q psy12210        334 DRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYK  400 (405)
Q Consensus       334 ~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~  400 (405)
                      ..|+        ...|.++.+ +.++|..| ++.|...+|.++ +|+.+++.+|.+..+...+|.++.
T Consensus       312 ~~I~--------~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          312 RILG--------QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             CEEC--------TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             EEEh--------hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            8898        889999999 99999654 999999999999 999999999999999988888874

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.58  E-value=8.2e-16  Score=153.58  Aligned_cols=196  Identities=16%  Similarity=0.195  Sum_probs=155.9

Q ss_pred             ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      ..+++..+.+..++. .-...|+.|++++|.++.++.  +..+++|+.|+|++|.+..+++  +..+++|+.|++++|.+
T Consensus        24 ~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           24 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            344555566655443 123679999999999999873  8889999999999999999876  88999999999999999


Q ss_pred             cccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccccc
Q psy12210        185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK  264 (405)
Q Consensus       185 ~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~  264 (405)
                      +.++  .+..+++|+.|++++|.+.                                    .++  .+...         
T Consensus       100 ~~l~--~l~~l~~L~~L~Ls~N~l~------------------------------------~l~--~l~~l---------  130 (605)
T 1m9s_A          100 KDLS--SLKDLKKLKSLSLEHNGIS------------------------------------DIN--GLVHL---------  130 (605)
T ss_dssp             CCCT--TSTTCTTCCEEECTTSCCC------------------------------------CCG--GGGGC---------
T ss_pred             CCCh--hhccCCCCCEEEecCCCCC------------------------------------CCc--cccCC---------
Confidence            9887  3788999999999998754                                    111  11111         


Q ss_pred             ceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchh
Q psy12210        265 IYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLY  342 (405)
Q Consensus       265 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~  342 (405)
                                                          .+|+.|++++|.++.++. ...++|+.|+++ |.+.+++     
T Consensus       131 ------------------------------------~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~-----  169 (605)
T 1m9s_A          131 ------------------------------------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----  169 (605)
T ss_dssp             ------------------------------------TTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG-----
T ss_pred             ------------------------------------CccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCch-----
Confidence                                                159999999999998842 234799999999 9999987     


Q ss_pred             ccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccc
Q psy12210        343 SYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRL  402 (405)
Q Consensus       343 ~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L  402 (405)
                         +  +..+++ +.|+|++|+|+.++  .+..+++|+.|+|++|.+...+...+..+..+
T Consensus       170 ---~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~  223 (605)
T 1m9s_A          170 ---P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVP  223 (605)
T ss_dssp             ---G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred             ---h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence               4  889999 99999999999984  48899999999999999998876655555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=1.1e-14  Score=135.20  Aligned_cols=217  Identities=14%  Similarity=0.061  Sum_probs=138.7

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC----cCcccChhhhhcccCCc
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN----NLTYLPDGVFAELFRLR  199 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n----~l~~l~~~~f~~l~~L~  199 (405)
                      ++|+.+++.+ .++.|+..+|.++.+|+.+++++|.+..+++.+|.++.++..+....+    ....+...+|..+.+|+
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            5788999988 999999999999999999999999999999999999888777776653    23445555666666666


Q ss_pred             -EEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccc-cCCCcccccCccccccccceecccccCCCCC
Q psy12210        200 -TLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD-IPEHEFKCSGSSMETRSKIYREECSTDFHPY  277 (405)
Q Consensus       200 -~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (405)
                       .+.+....        .+.............        +....+.. +....+..          ............+
T Consensus       180 ~~i~~~~~~--------~l~~~~~~~~~~~~~--------~~~l~~~~~l~~~~~~~----------l~~~~~~L~~l~L  233 (329)
T 3sb4_A          180 TTIQVGAMG--------KLEDEIMKAGLQPRD--------INFLTIEGKLDNADFKL----------IRDYMPNLVSLDI  233 (329)
T ss_dssp             EEEEECTTC--------CHHHHHHHTTCCGGG--------CSEEEEEECCCHHHHHH----------HHHHCTTCCEEEC
T ss_pred             eeEEecCCC--------cHHHHHhhcccCccc--------cceEEEeeeecHHHHHH----------HHHhcCCCeEEEC
Confidence             44443221        111111111000000        00000000 00000000          0000001111122


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCC---Cce-EEEEEecceeeeccchhccccccccCCc
Q psy12210        278 NSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE---ATT-ELTYMVSIDRVDKVLLYSYISNNFKRWT  353 (405)
Q Consensus       278 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~---~l~-~L~l~n~i~~i~~~~~~~~~~~~~~~l~  353 (405)
                      +.+.++.++..+|....       +|+.+++..| ++.++...|.   +|+ .+.+.+.++.|+        ...|.+++
T Consensus       234 ~~n~i~~I~~~aF~~~~-------~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~--------~~aF~~c~  297 (329)
T 3sb4_A          234 SKTNATTIPDFTFAQKK-------YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIE--------FGAFMGCD  297 (329)
T ss_dssp             TTBCCCEECTTTTTTCT-------TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTCCEEC--------TTTTTTCT
T ss_pred             CCCCcceecHhhhhCCC-------CCCEEECCcc-cceehHHHhhCChhccEEEEEcccceEEc--------hhhhhCCc
Confidence            23333344444333332       6999999997 9999988874   577 888888889998        89999999


Q ss_pred             c-ceEEecCCCCcccCcccccCCccCceeec
Q psy12210        354 N-RSRRLEQNDITELPPKAFANYKRLRRIRL  383 (405)
Q Consensus       354 ~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L  383 (405)
                      + +.+++++|+|+.|+..+|.++++|+.++.
T Consensus       298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          298 NLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9 99999999999999999999999999874

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.56  E-value=8.3e-15  Score=125.49  Aligned_cols=149  Identities=13%  Similarity=0.178  Sum_probs=96.2

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++++.|++++|.++.++  .+..+++|++|++++|.++.+.  .+..+++|++|++++|.++...+..|..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            35677777777777666  2666777777777777665543  4666777777777777776544445666677777777


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ++|.+..                                    .....+                               
T Consensus       120 s~n~i~~------------------------------------~~~~~l-------------------------------  132 (197)
T 4ezg_A          120 SHSAHDD------------------------------------SILTKI-------------------------------  132 (197)
T ss_dssp             CSSBCBG------------------------------------GGHHHH-------------------------------
T ss_pred             cCCccCc------------------------------------HhHHHH-------------------------------
Confidence            7665430                                    000000                               


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ec-ceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VS-IDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~-i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                                                         ...+.|++|+++ |. +..++          .+..+++ +.|+++
T Consensus       133 -----------------------------------~~l~~L~~L~L~~n~~i~~~~----------~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          133 -----------------------------------NTLPKVNSIDLSYNGAITDIM----------PLKTLPELKSLNIQ  167 (197)
T ss_dssp             -----------------------------------TTCSSCCEEECCSCTBCCCCG----------GGGGCSSCCEEECT
T ss_pred             -----------------------------------hhCCCCCEEEccCCCCccccH----------hhcCCCCCCEEECC
Confidence                                               012356666666 65 55554          4778888 999999


Q ss_pred             CCCCcccCcccccCCccCceeecccCCCcc
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQNDITE  390 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~  390 (405)
                      +|+|+.++  .+..+++|+.|++++|++..
T Consensus       168 ~n~i~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          168 FDGVHDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             TBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred             CCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence            99999887  47889999999999998764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=1e-14  Score=124.44  Aligned_cols=102  Identities=30%  Similarity=0.575  Sum_probs=66.5

Q ss_pred             CCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCccc
Q psy12210        294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKA  371 (405)
Q Consensus       294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~  371 (405)
                      .||..|.|.-+++++++++++.+|..+++.++.|+++ |.++.++         ..|.++++ +.|+|++|+|+.+++..
T Consensus         3 ~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip---------~~~~~l~~L~~L~Ls~N~i~~i~~~~   73 (193)
T 2wfh_A            3 RCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP---------KELSNYKHLTLIDLSNNRISTLSNQS   73 (193)
T ss_dssp             -CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC---------GGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH---------HHhhcccCCCEEECCCCcCCEeCHhH
Confidence            5888888888888888888888888777788888888 8777765         34555555 55555555555555555


Q ss_pred             ccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        372 FANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       372 ~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      |.++++|+.|+|++|+|+++++.+|.++++|++
T Consensus        74 f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           74 FSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             ccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence            555555555555555555555545555554443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.54  E-value=8.4e-16  Score=142.97  Aligned_cols=216  Identities=13%  Similarity=0.068  Sum_probs=120.6

Q ss_pred             ceEEcCCCCccccC--CCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceee-cccccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREKGLNKVP--ILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKV-AVDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n~l~~lp--~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n  182 (405)
                      +.++++++.+..-.  ....+.++.|++++|.+....+. +.++++|+.|++++|.+... .+..+..+++|++|++++|
T Consensus        50 ~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~  128 (336)
T 2ast_B           50 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL  128 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             eeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence            56677666654110  00114677777777777776654 45677777777777776643 3455667777777777777


Q ss_pred             cCcccChhhhhcccCCcEEEeecC-ccccccCchHHHHHHhhcCCCCCccccCCCCCCCCC-cccccC-CCcccccCccc
Q psy12210        183 NLTYLPDGVFAELFRLRTLRISEN-SFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ-NILDIP-EHEFKCSGSSM  259 (405)
Q Consensus       183 ~l~~l~~~~f~~l~~L~~L~l~~N-~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~l~-~~~~~~~~~~~  259 (405)
                      .++...+..+..+++|+.|++++| .+..    ..+.......+       .+..+.+.+. .+.... ...+...    
T Consensus       129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~----~~l~~~~~~~~-------~L~~L~l~~~~~l~~~~~~~~~~~l----  193 (336)
T 2ast_B          129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSE----FALQTLLSSCS-------RLDELNLSWCFDFTEKHVQVAVAHV----  193 (336)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCH----HHHHHHHHHCT-------TCCEEECCCCTTCCHHHHHHHHHHS----
T ss_pred             ccCHHHHHHHhcCCCCCEEECCCCCCCCH----HHHHHHHhcCC-------CCCEEcCCCCCCcChHHHHHHHHhc----
Confidence            776555556667777777777776 3320    01111111110       1111111111 111100 0000000    


Q ss_pred             cccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccc-cCceeecCCCC--CC--cCCCC--CCCCceEEEEE-e
Q psy12210        260 ETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRC-ADGIVDCREKG--LN--KVPIL--LPEATTELTYM-V  331 (405)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~l~~l~l~~n~--l~--~~p~~--~~~~l~~L~l~-n  331 (405)
                                                               . +|++|++++|.  ++  .+|..  ..++|++|+++ |
T Consensus       194 -----------------------------------------~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  232 (336)
T 2ast_B          194 -----------------------------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  232 (336)
T ss_dssp             -----------------------------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             -----------------------------------------ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence                                                     1 37788888873  43  23322  14678888888 7


Q ss_pred             c-ceeeeccchhccccccccCCcc-ceEEecCCC-CcccCcccccCCccCceeecccC
Q psy12210        332 S-IDRVDKVLLYSYISNNFKRWTN-RSRRLEQND-ITELPPKAFANYKRLRRIRLEQN  386 (405)
Q Consensus       332 ~-i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L~~N  386 (405)
                      . ++...        ...+..+++ +.|++++|. +.......+.++++|+.|++++|
T Consensus       233 ~~l~~~~--------~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          233 VMLKNDC--------FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCGGG--------GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCHHH--------HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            6 55433        356777777 888888884 43333335777888888888887

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.54  E-value=1.6e-15  Score=143.96  Aligned_cols=99  Identities=18%  Similarity=0.166  Sum_probs=71.4

Q ss_pred             cCceeecCCCCCCc------CCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccC---
Q psy12210        302 ADGIVDCREKGLNK------VPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP---  368 (405)
Q Consensus       302 ~l~~l~l~~n~l~~------~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~---  368 (405)
                      +|++|++++|+++.      +|..+  .++|+.|+++ |.+....   ... .+..+..+++ +.|+|++|+|+...   
T Consensus       188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSA-LAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHH-HHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHH-HHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            58999999999982      22122  4789999999 9984211   000 0257888999 99999999999762   


Q ss_pred             -cccc--cCCccCceeecccCCCcc-----cChhhcCCCccccC
Q psy12210        369 -PKAF--ANYKRLRRIRLEQNDITE-----LPPKAFANYKRLRR  404 (405)
Q Consensus       369 -~~~~--~~l~~L~~L~L~~N~l~~-----i~~~~f~~l~~L~~  404 (405)
                       +..+  ..+++|+.|+|++|.++.     ++...+.++++|++
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence             2345  338999999999999998     66554355666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=5.2e-14  Score=120.51  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=85.2

Q ss_pred             ceEEcCCCCccc-cCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCCCCCCCEEEccC
Q psy12210        106 GIVDCREKGLNK-VPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGLKSLTSLTLNN  181 (405)
Q Consensus       106 ~~l~~~~n~l~~-lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~  181 (405)
                      +.+++++|.++. .|..+  .++|++|++++|.++...+..+.++++|+.|++++|. ++.++  .+..+++|+.|++++
T Consensus        91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~  168 (197)
T 4ezg_A           91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQF  168 (197)
T ss_dssp             CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTT
T ss_pred             CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCC
Confidence            888999999876 45444  3689999999999998777779999999999999998 88775  588999999999999


Q ss_pred             CcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        182 NNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       182 n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      |.++.++  .+..+++|+.|++++|++.
T Consensus       169 n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          169 DGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             BCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             CCCcChH--HhccCCCCCEEEeeCcccC
Confidence            9999987  4788999999999999864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=2.1e-14  Score=122.43  Aligned_cols=103  Identities=31%  Similarity=0.619  Sum_probs=69.9

Q ss_pred             CCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecceeeeccchhccccc-cccCCcc-ceEEecCCCCcccCcc
Q psy12210        294 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDRVDKVLLYSYISN-NFKRWTN-RSRRLEQNDITELPPK  370 (405)
Q Consensus       294 ~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~-~~~~l~~-~~L~L~~N~i~~i~~~  370 (405)
                      .||..|.|..+.+++++++++.+|..+++.+++|+++ |++..++        +. .|+.+++ +.|+|++|+|+.+.+.
T Consensus         1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~~~~~   72 (192)
T 1w8a_A            1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRIS--------SDGLFGRLPHLVKLELKRNQLTGIEPN   72 (192)
T ss_dssp             CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBC--------CSCSGGGCTTCCEEECCSSCCCCBCTT
T ss_pred             CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccC--------CccccccCCCCCEEECCCCCCCCcCHh
Confidence            3788888888888888888888887777778888888 7777776        32 3555666 6666666666666555


Q ss_pred             cccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        371 AFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       371 ~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      .|.++++|+.|+|++|+|+++++..|.++++|++
T Consensus        73 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            5666666666666666666666555555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=6.5e-14  Score=116.64  Aligned_cols=87  Identities=23%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             cCCCCCCCccEEEccCCCCC--CCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcc
Q psy12210        118 VPILLPEATTELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL  195 (405)
Q Consensus       118 lp~~~~~~L~~L~L~~n~i~--~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l  195 (405)
                      ++...+++++.|++++|.++  .++. .+..+++|+.|++++|.++.+  ..+..+++|++|++++|.++...+..+..+
T Consensus        18 ~~~~~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   94 (168)
T 2ell_A           18 LRNRTPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL   94 (168)
T ss_dssp             HTTSCTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred             hccCCcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence            34445567888888888887  5554 367777888888888887776  557777777777777777777444555666


Q ss_pred             cCCcEEEeecCc
Q psy12210        196 FRLRTLRISENS  207 (405)
Q Consensus       196 ~~L~~L~l~~N~  207 (405)
                      ++|+.|++++|.
T Consensus        95 ~~L~~L~Ls~N~  106 (168)
T 2ell_A           95 PNLTHLNLSGNK  106 (168)
T ss_dssp             TTCCEEECBSSS
T ss_pred             CCCCEEeccCCc
Confidence            667666666665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=1.2e-13  Score=114.97  Aligned_cols=86  Identities=26%  Similarity=0.274  Sum_probs=75.5

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCcCcccCh---hhhhcccCCc
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLPD---GVFAELFRLR  199 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~---~~f~~l~~L~  199 (405)
                      +++++|++++|.++...+..+.++++|+.|++++|.++.++. ..+..+++|+.|++++|.++.+++   ..|..+++|+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            589999999999999666667779999999999999998753 678899999999999999999987   6788999999


Q ss_pred             EEEeecCccc
Q psy12210        200 TLRISENSFI  209 (405)
Q Consensus       200 ~L~l~~N~l~  209 (405)
                      .|++.+|.+.
T Consensus       151 ~L~l~~n~~~  160 (168)
T 2ell_A          151 YLDGYDREDQ  160 (168)
T ss_dssp             EETTEETTSC
T ss_pred             EecCCCCChh
Confidence            9999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=6.6e-15  Score=146.11  Aligned_cols=100  Identities=28%  Similarity=0.327  Sum_probs=91.6

Q ss_pred             ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|.++.+|. +.  ++|+.|++++|.|+.+|. .|+++++|+.|++++|.+++++  .+..+++|+.|++++|.
T Consensus       444 ~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR  519 (567)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             eEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCC
Confidence            789999999999996 53  689999999999998876 6999999999999999999975  69999999999999999


Q ss_pred             CcccC-hhhhhcccCCcEEEeecCccc
Q psy12210        184 LTYLP-DGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       184 l~~l~-~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ++.+. +..|..+++|+.|++++|++.
T Consensus       520 l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          520 LQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            99996 667899999999999999976

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.45  E-value=1.8e-13  Score=108.28  Aligned_cols=112  Identities=38%  Similarity=0.763  Sum_probs=89.6

Q ss_pred             CCCCCccccCceEEcCCCCcc--ccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210         96 SCPHPCRCADGIVDCREKGLN--KVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS  173 (405)
Q Consensus        96 ~~p~~~~c~~~~l~~~~n~l~--~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  173 (405)
                      .||..|.|....++|++++++  ++|..+|.+++.|+|++|.|+.++.+                               
T Consensus         1 ~CP~~C~C~~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~-------------------------------   49 (130)
T 3rfe_A            1 PCPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPG-------------------------------   49 (130)
T ss_dssp             CCCTTCEEETTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTT-------------------------------
T ss_pred             CcCCCCEEcCCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChh-------------------------------
Confidence            399999999999999999999  99987776666666666655555543                               


Q ss_pred             CCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCC--CCCccccCCCCCCCCCcccccCCCc
Q psy12210        174 LTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPR--LGLYTKCFAPSHIKGQNILDIPEHE  251 (405)
Q Consensus       174 L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~l~~~~  251 (405)
                                       +|..+++|+.|++.+|++.|+|.+.|+..|+.....  ....+.|..|..+.+..+.++....
T Consensus        50 -----------------~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~  112 (130)
T 3rfe_A           50 -----------------LLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRCVAPPALRGRLLPYLAEDE  112 (130)
T ss_dssp             -----------------TGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGGGTTCBCCBSTTTTTCBGGGCCHHH
T ss_pred             -----------------hhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccccccCcEeCcChHHcCCCcccCCHHH
Confidence                             355566666789999999999999999999887653  2346789999999999999999888


Q ss_pred             cccc
Q psy12210        252 FKCS  255 (405)
Q Consensus       252 ~~~~  255 (405)
                      +.|.
T Consensus       113 l~c~  116 (130)
T 3rfe_A          113 LRAA  116 (130)
T ss_dssp             HHHT
T ss_pred             hhCc
Confidence            8743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.44  E-value=2.7e-14  Score=145.96  Aligned_cols=101  Identities=26%  Similarity=0.338  Sum_probs=87.3

Q ss_pred             ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|.+..+|..+.  ++|+.|+|++|.|+.++. .|.++++|+.|+|++|.++.+ |..|.++++|++|++++|.
T Consensus       227 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          227 HALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             CEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSC
T ss_pred             cEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCC
Confidence            889999999988887653  689999999999998775 588999999999999999976 5678889999999999999


Q ss_pred             CcccChhhhhcccCCcEEEeecCccc
Q psy12210        184 LTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       184 l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ++.++.+ |..+++|+.|++++|.+.
T Consensus       305 l~~lp~~-~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          305 VTTLPWE-FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred             CCccChh-hhcCCCccEEeCCCCccC
Confidence            9988875 788999999999999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.43  E-value=2.8e-12  Score=121.86  Aligned_cols=72  Identities=25%  Similarity=0.394  Sum_probs=53.9

Q ss_pred             CCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCc
Q psy12210        134 NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       134 n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      ..+..+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.+...+|..+..|+.+.+..+.
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence            4455566667888888888888754 45677788888888888888765 777888888888888877766554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.43  E-value=2.4e-13  Score=110.78  Aligned_cols=98  Identities=26%  Similarity=0.311  Sum_probs=76.1

Q ss_pred             ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n  182 (405)
                      +.+++++|.++.+ ..+  .+++++|++++|.++...+..+.++++|+.|++++|.++.++ +..+..+++|++|++++|
T Consensus        45 ~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           45 EFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             CEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             cEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence            4444444444444 112  257899999999999865666777899999999999998864 367888999999999999


Q ss_pred             cCcccCh---hhhhcccCCcEEEee
Q psy12210        183 NLTYLPD---GVFAELFRLRTLRIS  204 (405)
Q Consensus       183 ~l~~l~~---~~f~~l~~L~~L~l~  204 (405)
                      .++.+++   ..+..+++|+.|+++
T Consensus       124 ~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          124 EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cccchHHHHHHHHHHCCCcccccCC
Confidence            9998887   678889999998875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=8.4e-14  Score=142.38  Aligned_cols=98  Identities=29%  Similarity=0.348  Sum_probs=48.0

Q ss_pred             ceEEcCCCCccccCCCCCCCccEEEccCCCCCC---------CCcccccCCCCCcEEecCCCcceeecccccCCCCCCCE
Q psy12210        106 GIVDCREKGLNKVPILLPEATTELRLEQNDITE---------LPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTS  176 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~---------l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~  176 (405)
                      +.+++.++.+...|..+   ++.++|+.+.|..         +++..|..+..|+.|+|++|.+..+++. +..+++|++
T Consensus       176 ~~l~L~~n~~~~~~~~~---l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~  251 (727)
T 4b8c_D          176 PKIELFANGKDEANQAL---LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCSCCCGG-GGGCCSCSC
T ss_pred             ceEEeeCCCCCcchhhH---hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCCCCCCE
Confidence            66677777776665433   2333334333332         3355677888888888888888877654 447888888


Q ss_pred             EEccCCcCcccChhhhhcccCCcEEEeecCcc
Q psy12210        177 LTLNNNNLTYLPDGVFAELFRLRTLRISENSF  208 (405)
Q Consensus       177 L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l  208 (405)
                      |++++|.|+.++. .|..+++|+.|++++|.+
T Consensus       252 L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          252 LYLNGNSLTELPA-EIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             CBCTTSCCSCCCG-GGGGGTTCCEEECTTSCC
T ss_pred             EEeeCCcCcccCh-hhhCCCCCCEEeCcCCcC
Confidence            8888888887775 467788888888888874

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=3.3e-13  Score=113.30  Aligned_cols=103  Identities=19%  Similarity=0.224  Sum_probs=87.2

Q ss_pred             ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n  182 (405)
                      +.+++++|.++.++ .+  .+++++|++++|.++.+++..|..+++|+.|++++|.++.++. ..+..+++|+.|++++|
T Consensus        45 ~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N  123 (176)
T 1a9n_A           45 DAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN  123 (176)
T ss_dssp             SEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCCCCccc-ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence            77788888877773 33  3589999999999999988777899999999999999988764 36888999999999999


Q ss_pred             cCcccChh---hhhcccCCcEEEeecCccc
Q psy12210        183 NLTYLPDG---VFAELFRLRTLRISENSFI  209 (405)
Q Consensus       183 ~l~~l~~~---~f~~l~~L~~L~l~~N~l~  209 (405)
                      .++.++..   ++..+++|+.|++++|...
T Consensus       124 ~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          124 PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99988865   5788999999999998754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.37  E-value=8.8e-14  Score=139.37  Aligned_cols=87  Identities=8%  Similarity=-0.040  Sum_probs=61.0

Q ss_pred             cCceeecCCCC--CCcCC-C---CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCc-ccc
Q psy12210        302 ADGIVDCREKG--LNKVP-I---LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPP-KAF  372 (405)
Q Consensus       302 ~l~~l~l~~n~--l~~~p-~---~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~-~~~  372 (405)
                      +|+.|+++++.  ++... .   ...++|++|+++ |.+++..       .+..+.++++ +.|+|++|.++.... ..+
T Consensus       437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-------LMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH-------HHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH-------HHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence            68999997543  43211 1   124689999999 9887532       0244577889 999999999875432 334


Q ss_pred             cCCccCceeecccCCCcccChhh
Q psy12210        373 ANYKRLRRIRLEQNDITELPPKA  395 (405)
Q Consensus       373 ~~l~~L~~L~L~~N~l~~i~~~~  395 (405)
                      ..+++|+.|+|++|+++......
T Consensus       510 ~~l~~L~~L~ls~n~it~~~~~~  532 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYRASMTGQDL  532 (592)
T ss_dssp             HHCSSCCEEEEESCBCCTTCTTG
T ss_pred             HhcCccCeeECcCCcCCHHHHHH
Confidence            57899999999999988765443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.37  E-value=1.3e-12  Score=109.69  Aligned_cols=81  Identities=30%  Similarity=0.419  Sum_probs=62.9

Q ss_pred             CCccEEEccCCCCCCCCcccccCCC-CCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEE
Q psy12210        124 EATTELRLEQNDITELPPKAFANYK-RLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLR  202 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~  202 (405)
                      .+++.|++++|.++.++.  +..+. +|+.|++++|.++.+  ..|..+++|++|++++|.++.++++.|..+++|+.|+
T Consensus        19 ~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            578888888888887743  44444 888888888888887  4578888888888888888888877777777788777


Q ss_pred             eecCcc
Q psy12210        203 ISENSF  208 (405)
Q Consensus       203 l~~N~l  208 (405)
                      +++|.+
T Consensus        95 L~~N~i  100 (176)
T 1a9n_A           95 LTNNSL  100 (176)
T ss_dssp             CCSCCC
T ss_pred             CCCCcC
Confidence            777763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.36  E-value=1.9e-12  Score=105.41  Aligned_cols=81  Identities=17%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             CCccEEEccCCCCC--CCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEE
Q psy12210        124 EATTELRLEQNDIT--ELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTL  201 (405)
Q Consensus       124 ~~L~~L~L~~n~i~--~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L  201 (405)
                      ++++.|++++|.++  .++. .+..+++|+.|++++|.++.+  ..+..+++|++|++++|.++...+..+..+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            46777777777776  4443 456677777777777777666  446666677777777777666444455556666666


Q ss_pred             EeecCc
Q psy12210        202 RISENS  207 (405)
Q Consensus       202 ~l~~N~  207 (405)
                      ++++|.
T Consensus        94 ~ls~N~   99 (149)
T 2je0_A           94 NLSGNK   99 (149)
T ss_dssp             ECTTSC
T ss_pred             ECCCCc
Confidence            665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=3.1e-13  Score=134.06  Aligned_cols=175  Identities=15%  Similarity=0.119  Sum_probs=126.2

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCc-------------ccccchh--hHHHHHHhhCCCcc------------
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENS-------------FICDCHL--SWLHRWLKRYPRLG------------   54 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~-------------~~~~~~~--~~l~~~~~~~~~~~------------   54 (405)
                      .|+|++|+|+.+|. .++++++|+.|++++|.             +.+..+.  ..+ ..+..+....            
T Consensus       353 ~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l-~~L~~L~~l~~n~~~~L~~l~l  430 (567)
T 1dce_A          353 RCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF-STLKAVDPMRAAYLDDLRSKFL  430 (567)
T ss_dssp             SCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH-HHHHHHCGGGHHHHHHHHHHHH
T ss_pred             eccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH-HhcccCcchhhcccchhhhhhh
Confidence            68999999998866 58999999999997764             2221110  000 0111111000            


Q ss_pred             ------c-cccccCCCcccCCcccccCCCccccCCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCC--CC
Q psy12210         55 ------L-YTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP--EA  125 (405)
Q Consensus        55 ------~-~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~--~~  125 (405)
                            . .......+++++|.++.++.  +....                     .++.+++++|.++.+|..+.  ++
T Consensus       431 ~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~---------------------~L~~L~Ls~N~l~~lp~~~~~l~~  487 (567)
T 1dce_A          431 LENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLL---------------------LVTHLDLSHNRLRALPPALAALRC  487 (567)
T ss_dssp             HHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGT---------------------TCCEEECCSSCCCCCCGGGGGCTT
T ss_pred             hcccccccCccCceEEEecCCCCCCCcC--ccccc---------------------cCcEeecCcccccccchhhhcCCC
Confidence                  0 00012345666666666653  22111                     13999999999999997663  79


Q ss_pred             ccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCcccChh---hhhcccCCcEE
Q psy12210        126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLTYLPDG---VFAELFRLRTL  201 (405)
Q Consensus       126 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~~---~f~~l~~L~~L  201 (405)
                      |+.|++++|.|+.++  .++++++|+.|++++|.++++. |..+..+++|+.|++++|.++.+++.   .+..+++|+.|
T Consensus       488 L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          488 LEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            999999999999987  5999999999999999999997 78899999999999999999988753   34568899998


Q ss_pred             Ee
Q psy12210        202 RI  203 (405)
Q Consensus       202 ~l  203 (405)
                      ++
T Consensus       566 ~l  567 (567)
T 1dce_A          566 LT  567 (567)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=3.5e-12  Score=119.04  Aligned_cols=100  Identities=23%  Similarity=0.423  Sum_probs=91.3

Q ss_pred             CCCCc-cccCceeecCCC-CCCcCCCCCC--CCceEEEEE--ecceeeeccchhccccccccCCcc-ceEEecCCCCccc
Q psy12210        295 CPHPC-RCADGIVDCREK-GLNKVPILLP--EATTELTYM--VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITEL  367 (405)
Q Consensus       295 ~~~~~-~~~l~~l~l~~n-~l~~~p~~~~--~~l~~L~l~--n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i  367 (405)
                      ||..| .|.-..++++++ +|+.+|. ++  ++|+.|+|+  |.+..++        +..|.++++ +.|+|++|+|+.+
T Consensus         1 cp~~c~~C~~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~--------~~~~~~l~~L~~L~l~~N~l~~~   71 (347)
T 2ifg_A            1 CPDACCPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLE--------LRDLRGLGELRNLTIVKSGLRFV   71 (347)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEEC--------GGGSCSCCCCSEEECCSSCCCEE
T ss_pred             CCCcCccccCCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcC--------hhHhccccCCCEEECCCCcccee
Confidence            88999 999999999998 9999998 65  469999997  8999999        888999999 9999999999999


Q ss_pred             CcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        368 PPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       368 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      ++.+|.++++|+.|+|++|+|+++++..|..++ |++
T Consensus        72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~  107 (347)
T 2ifg_A           72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQE  107 (347)
T ss_dssp             CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCE
T ss_pred             CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceE
Confidence            999999999999999999999999998887765 554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=2e-10  Score=109.10  Aligned_cols=92  Identities=21%  Similarity=0.315  Sum_probs=59.1

Q ss_pred             cCceeecCCCCCCcCCCCCC---CCceEEEEEecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCcc
Q psy12210        302 ADGIVDCREKGLNKVPILLP---EATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKR  377 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~  377 (405)
                      .++.+.+.. .++.+....+   +.|+.+.+.+.+..|+        ...|.++.+ +.++|.. .++.|...+|.+|.+
T Consensus       266 ~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~~i~~I~--------~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          266 YLASVKMPD-SVVSIGTGAFMNCPALQDIEFSSRITELP--------ESVFAGCISLKSIDIPE-GITQILDDAFAGCEQ  335 (394)
T ss_dssp             SCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEEC--------TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred             cccEEeccc-ccceecCcccccccccccccCCCcccccC--------ceeecCCCCcCEEEeCC-cccEehHhHhhCCCC
Confidence            455565543 2334444443   3566666666666676        667777777 7777764 377777777777777


Q ss_pred             CceeecccCCCcccChhhcCCCccccC
Q psy12210        378 LRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       378 L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      |+.+.|..+ ++.|...+|.++++|+.
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~  361 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNN  361 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCE
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCE
Confidence            777777543 77777777777777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.22  E-value=1.1e-12  Score=131.28  Aligned_cols=80  Identities=5%  Similarity=0.002  Sum_probs=53.5

Q ss_pred             cCceeecCCCCCCcCC-CC---CCCCceEEEEE-ecceeeeccchhccccccc-cCCcc-ceEEecCCCCcccCcc-ccc
Q psy12210        302 ADGIVDCREKGLNKVP-IL---LPEATTELTYM-VSIDRVDKVLLYSYISNNF-KRWTN-RSRRLEQNDITELPPK-AFA  373 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p-~~---~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~-~~l~~-~~L~L~~N~i~~i~~~-~~~  373 (405)
                      +|+.|++++ .++... ..   ..++|+.|+++ |.+++..        ...+ .++++ +.|+|++|.++..... ...
T Consensus       433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~--------~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~  503 (594)
T 2p1m_B          433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG--------MHHVLSGCDSLRKLEIRDCPFGDKALLANAS  503 (594)
T ss_dssp             TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH--------HHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred             CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH--------HHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence            577888866 444321 11   14678889998 8876543        2233 56788 9999999988655433 345


Q ss_pred             CCccCceeecccCCCcc
Q psy12210        374 NYKRLRRIRLEQNDITE  390 (405)
Q Consensus       374 ~l~~L~~L~L~~N~l~~  390 (405)
                      .+++|+.|++++|.++.
T Consensus       504 ~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          504 KLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             GGGGSSEEEEESSCCBH
T ss_pred             hCCCCCEEeeeCCCCCH
Confidence            57899999999998743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.20  E-value=1.8e-10  Score=109.43  Aligned_cols=91  Identities=9%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             cCceeecCCCCCCcCCCCCC---CCceEEEEEecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCcc
Q psy12210        302 ADGIVDCREKGLNKVPILLP---EATTELTYMVSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKR  377 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~  377 (405)
                      +|+.+.+.. .++.++...|   .+|+.+.+.+.++.|+        ..+|.++.+ +.+++..| ++.|...+|.+|++
T Consensus       298 ~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~--------~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          298 SLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPYLVEEIG--------KRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TCCEEEECT-TCCEECTTTTTTCTTCCEECCCTTCCEEC--------TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccc-ccceechhhhcCCCCCCEEEeCCcccEEh--------HHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            577777764 4777776666   4677777775588888        788999888 88988876 88898888999999


Q ss_pred             CceeecccCCCcccChhhcCCCccccC
Q psy12210        378 LRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       378 L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      |+.+++..+ ++.+. .+|.++++|+.
T Consensus       368 L~~i~lp~~-~~~~~-~~F~~c~~L~~  392 (394)
T 4fs7_A          368 LKKVELPKR-LEQYR-YDFEDTTKFKW  392 (394)
T ss_dssp             CCEEEEEGG-GGGGG-GGBCTTCEEEE
T ss_pred             CCEEEECCC-CEEhh-heecCCCCCcE
Confidence            999998764 55553 56888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.19  E-value=1.6e-12  Score=130.25  Aligned_cols=81  Identities=15%  Similarity=0.205  Sum_probs=56.1

Q ss_pred             CCccEEEccCCCCCCCCc----ccccCCCCCcEEecCCCcceeec----ccccCCCCCCCEEEccCCcCcccChhhhhcc
Q psy12210        124 EATTELRLEQNDITELPP----KAFANYKRLRRIDLSKNQISKVA----VDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL  195 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l  195 (405)
                      ++|++|++++|.+++...    ..+..+++|+.|++++|.++.+.    +..+.++++|+.|++++|.+..++ ..+..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~  242 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAA  242 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHC
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhh
Confidence            467888888887765532    13456778888888888776332    233456778888888888877766 457778


Q ss_pred             cCCcEEEeec
Q psy12210        196 FRLRTLRISE  205 (405)
Q Consensus       196 ~~L~~L~l~~  205 (405)
                      ++|+.|+++.
T Consensus       243 ~~L~~L~l~~  252 (592)
T 3ogk_B          243 ANLEEFCGGS  252 (592)
T ss_dssp             TTCCEEEECB
T ss_pred             hHHHhhcccc
Confidence            8888888875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.18  E-value=3.7e-13  Score=115.23  Aligned_cols=95  Identities=25%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             ceEEcCCCCccccCCCCC--CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCC
Q psy12210        106 GIVDCREKGLNKVPILLP--EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNN  182 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n  182 (405)
                      +.+++++|.++.+|..+.  ++++.|++++|.++.++  .+..+++|+.|++++|.++.+++ ..+..+++|++|++++|
T Consensus        73 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A           73 RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             CEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            455555555555553221  45666666666666654  35566666666666666665543 34566666666666666


Q ss_pred             cCcccCh----------hhhhcccCCcEEE
Q psy12210        183 NLTYLPD----------GVFAELFRLRTLR  202 (405)
Q Consensus       183 ~l~~l~~----------~~f~~l~~L~~L~  202 (405)
                      .+....+          ..+..+++|+.|+
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            6644432          2355566666664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.15  E-value=4.6e-13  Score=114.63  Aligned_cols=61  Identities=8%  Similarity=0.010  Sum_probs=45.3

Q ss_pred             CCceEEEEE-ecceeeeccchhcccc-ccccCCcc-ceEEecCCCCcccCcc----------cccCCccCceeecccCCC
Q psy12210        322 EATTELTYM-VSIDRVDKVLLYSYIS-NNFKRWTN-RSRRLEQNDITELPPK----------AFANYKRLRRIRLEQNDI  388 (405)
Q Consensus       322 ~~l~~L~l~-n~i~~i~~~~~~~~~~-~~~~~l~~-~~L~L~~N~i~~i~~~----------~~~~l~~L~~L~L~~N~l  388 (405)
                      +++++|+++ |++..++        . ..+..+++ +.|++++|.+....+.          .+..+++|+.||  +|.+
T Consensus       115 ~~L~~L~l~~N~i~~~~--------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i  184 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWG--------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHSSEEEESEEECCCHH--------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred             CCCCEEECCCCcCCchh--------HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence            367778888 8887766        2 46788899 9999999998776543          377789999887  6666


Q ss_pred             cccC
Q psy12210        389 TELP  392 (405)
Q Consensus       389 ~~i~  392 (405)
                      +...
T Consensus       185 ~~~e  188 (198)
T 1ds9_A          185 DVDE  188 (198)
T ss_dssp             TTTT
T ss_pred             CHHH
Confidence            5543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.13  E-value=2.1e-09  Score=101.34  Aligned_cols=68  Identities=15%  Similarity=0.265  Sum_probs=38.7

Q ss_pred             CCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecC
Q psy12210        135 DITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISEN  206 (405)
Q Consensus       135 ~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N  206 (405)
                      .++.+...+|... +|+.+.++.+ ++.+...+|.++ +++.+.+.. .++.+...+|....+++.+.+..+
T Consensus       101 ~l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          101 RVKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTT
T ss_pred             eeeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccc
Confidence            3555555556543 6777776643 445555556554 455555543 355566666666667766665543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.11  E-value=1.1e-11  Score=124.20  Aligned_cols=79  Identities=10%  Similarity=0.056  Sum_probs=56.1

Q ss_pred             cCceeecCCCCCCcCCC----CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccc-cC
Q psy12210        302 ADGIVDCREKGLNKVPI----LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAF-AN  374 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~----~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~-~~  374 (405)
                      +|+.|++++|.++....    ...++|+.|+++ |.+....   .    ......+++ +.|++++|+++......+ ..
T Consensus       457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~---~----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~  529 (594)
T 2p1m_B          457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA---L----LANASKLETMRSLWMSSCSVSFGACKLLGQK  529 (594)
T ss_dssp             TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH---H----HHTGGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred             hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH---H----HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence            69999999999864321    125789999999 9885433   0    123455788 999999999865544444 55


Q ss_pred             CccCceeecccCC
Q psy12210        375 YKRLRRIRLEQND  387 (405)
Q Consensus       375 l~~L~~L~L~~N~  387 (405)
                      +|+|+...+..+.
T Consensus       530 lp~l~i~~~~~~~  542 (594)
T 2p1m_B          530 MPKLNVEVIDERG  542 (594)
T ss_dssp             CTTEEEEEECSSS
T ss_pred             CCCCEEEEecCCC
Confidence            7888887777664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.11  E-value=2.2e-09  Score=101.79  Aligned_cols=234  Identities=16%  Similarity=0.204  Sum_probs=131.0

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      .+|+.+.+. +.++.+....|..+..|+.+.+..+ ++.+...+|.+ .+|+.+.+..+ +..+...+|..+.+++....
T Consensus       137 ~~L~~i~lp-~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          137 EELDTVTIP-EGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccc-ceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecc
Confidence            456677764 4466667777777777777777654 66666666754 46777777543 45555666777777776655


Q ss_pred             ecCccccc-------cCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCccccc-CccccccccceecccccCCC
Q psy12210        204 SENSFICD-------CHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS-GSSMETRSKIYREECSTDFH  275 (405)
Q Consensus       204 ~~N~l~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  275 (405)
                      ..+.....       +.....  .....+..........     ...+..+....|... ....      .         
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i-----p~~v~~i~~~aF~~c~~L~~------i---------  270 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDY--ALIRYPSQREDPAFKI-----PNGVARIETHAFDSCAYLAS------V---------  270 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCE--EEEECCTTCCCSEEEC-----CTTEEEECTTTTTTCSSCCE------E---------
T ss_pred             cccccccccceeecccccccc--cccccccccccceEEc-----CCcceEcccceeeecccccE------E---------
Confidence            44332110       000000  0000000000000000     011223333333211 0000      0         


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEEEecceeeeccchhccccccccCC
Q psy12210        276 PYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTYMVSIDRVDKVLLYSYISNNFKRW  352 (405)
Q Consensus       276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~n~i~~i~~~~~~~~~~~~~~~l  352 (405)
                      .++ ..+..+...++....       .|+.+.+. +.++.++...|   .+|+.+.+.+.++.|.        ..+|.++
T Consensus       271 ~lp-~~~~~I~~~aF~~c~-------~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~--------~~aF~~C  333 (394)
T 4gt6_A          271 KMP-DSVVSIGTGAFMNCP-------ALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQIL--------DDAFAGC  333 (394)
T ss_dssp             ECC-TTCCEECTTTTTTCT-------TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEEC--------TTTTTTC
T ss_pred             ecc-cccceecCccccccc-------ccccccCC-CcccccCceeecCCCCcCEEEeCCcccEeh--------HhHhhCC
Confidence            000 001112222222211       57888886 57888888877   4788888886688898        8899999


Q ss_pred             cc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        353 TN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       353 ~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      .+ +.+.+.. .++.|...+|.+|++|+.+++.++....   ..|...++|+.
T Consensus       334 ~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~  382 (394)
T 4gt6_A          334 EQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQN  382 (394)
T ss_dssp             TTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--
T ss_pred             CCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCE
Confidence            99 9999975 4999999999999999999999875322   34555555543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.92  E-value=1.1e-07  Score=89.46  Aligned_cols=91  Identities=22%  Similarity=0.263  Sum_probs=71.0

Q ss_pred             cCceeecCCCCCCcCCCCCC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCc
Q psy12210        302 ADGIVDCREKGLNKVPILLP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYK  376 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~  376 (405)
                      .++.+.+.. .++.++...|   .+|+.+.+. +.++.|+        ...|.++.+ +.+.|.. .++.|...+|.+|.
T Consensus       264 ~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~--------~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~  333 (379)
T 4h09_A          264 ALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLE--------PRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCK  333 (379)
T ss_dssp             TCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEEC--------TTTTTTCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred             hhccccccc-cceeccccccccccccccccccccccceeh--------hhhhcCCCCCCEEEcCc-cccEEHHHHhhCCC
Confidence            466666653 4666666665   478888888 7888888        788999988 9999975 48889888899999


Q ss_pred             cCceeecccCCCcccChhhcCCCcccc
Q psy12210        377 RLRRIRLEQNDITELPPKAFANYKRLR  403 (405)
Q Consensus       377 ~L~~L~L~~N~l~~i~~~~f~~l~~L~  403 (405)
                      +|+.+.+..+ ++.|...+|.+++.++
T Consensus       334 ~L~~i~ip~~-v~~I~~~aF~~c~~~~  359 (379)
T 4h09_A          334 ALSTISYPKS-ITLIESGAFEGSSITK  359 (379)
T ss_dssp             TCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred             CCCEEEECCc-cCEEchhHhhCCCCCc
Confidence            9999998764 8888888888876543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.91  E-value=2.1e-10  Score=107.84  Aligned_cols=104  Identities=15%  Similarity=0.093  Sum_probs=66.6

Q ss_pred             ceEEcCCCCccccCCC--------CCCCccEEEccCCCCCCCCccc----ccCCCCCcEEecCCCcceeec----ccccC
Q psy12210        106 GIVDCREKGLNKVPIL--------LPEATTELRLEQNDITELPPKA----FANYKRLRRIDLSKNQISKVA----VDAFQ  169 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~--------~~~~L~~L~L~~n~i~~l~~~~----~~~l~~L~~L~ls~n~l~~~~----~~~~~  169 (405)
                      +.+++++|.++.....        ....|+.|++++|.|+......    +...++|++|++++|.++...    ...+.
T Consensus       129 ~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD  208 (372)
T ss_dssp             EEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred             cHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence            5566666665433211        1246788888888876543322    356777888888888877543    34456


Q ss_pred             CCCCCCEEEccCCcCcccChhh----hhcccCCcEEEeecCccc
Q psy12210        170 GLKSLTSLTLNNNNLTYLPDGV----FAELFRLRTLRISENSFI  209 (405)
Q Consensus       170 ~l~~L~~L~l~~n~l~~l~~~~----f~~l~~L~~L~l~~N~l~  209 (405)
                      ..++|+.|++++|.++......    +...++|+.|++++|.+.
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            6677888888888877654333    334577888888888765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.86  E-value=1e-10  Score=110.00  Aligned_cols=87  Identities=18%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             CCCccEEEccCCCCCCCCcccccCC-----CCCcEEecCCCcceeeccccc-CCCCCCCEEEccCCcCcccChhhhh---
Q psy12210        123 PEATTELRLEQNDITELPPKAFANY-----KRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTLNNNNLTYLPDGVFA---  193 (405)
Q Consensus       123 ~~~L~~L~L~~n~i~~l~~~~~~~l-----~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~l~~~~f~---  193 (405)
                      .+.++.|++++|.++......+..+     .+|++|++++|.++......+ ..+.+|+.|++++|.++......+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3578888888888876554443322     678888888888765432222 2345778888888888766554442   


Q ss_pred             --cccCCcEEEeecCccc
Q psy12210        194 --ELFRLRTLRISENSFI  209 (405)
Q Consensus       194 --~l~~L~~L~l~~N~l~  209 (405)
                        ..++|+.|++++|.+.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~  168 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLT  168 (372)
T ss_dssp             HSTTCCCCEEECCSSCCH
T ss_pred             HhcCCccceeeCCCCCCC
Confidence              3467888888887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.33  E-value=5.2e-07  Score=70.93  Aligned_cols=64  Identities=31%  Similarity=0.648  Sum_probs=59.8

Q ss_pred             CCCCCccccCceeecCCCCCC--cCCCCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCc
Q psy12210        294 SCPHPCRCADGIVDCREKGLN--KVPILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDIT  365 (405)
Q Consensus       294 ~~~~~~~~~l~~l~l~~n~l~--~~p~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~  365 (405)
                      .||..|.|.-..+++++++++  .+|..+++++++|+|+ |+|+.++        .+.|..+++ +.|+|++|.+.
T Consensus         1 ~CP~~C~C~~~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~--------~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A            1 PCPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALP--------PGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCCTTCEEETTEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCC--------TTTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCCEEcCCEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccC--------hhhhhhccccCEEEecCCCee
Confidence            389999999999999999999  9999999999999999 9999999        888999999 99999999775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.09  E-value=2.3e-06  Score=71.78  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=62.8

Q ss_pred             CCccEEEccCCCCCCCCcc----cccCCCCCcEEecCCCcceeec----ccccCCCCCCCEEEc--cCCcCcccCh----
Q psy12210        124 EATTELRLEQNDITELPPK----AFANYKRLRRIDLSKNQISKVA----VDAFQGLKSLTSLTL--NNNNLTYLPD----  189 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l--~~n~l~~l~~----  189 (405)
                      +++++|+|++|.|......    .+...+.|++|++++|.+....    ...+...++|++|++  ++|.++....    
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            3678888888888753322    2445578999999999887642    355677788999999  8898886543    


Q ss_pred             hhhhcccCCcEEEeecCccc
Q psy12210        190 GVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       190 ~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ..+...++|+.|++++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            23445588999999999865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.91  E-value=2.6e-05  Score=72.48  Aligned_cols=79  Identities=14%  Similarity=0.067  Sum_probs=48.1

Q ss_pred             CCccEEEccCCCCCC-----C----CcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhh-
Q psy12210        124 EATTELRLEQNDITE-----L----PPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFA-  193 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~-----l----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~-  193 (405)
                      ++|+.|.+.......     +    ....+..+++|++|.++++.-..+++  +. .++|+.|++..+.+..-....+. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence            478888876543321     1    11234667888888888773222322  33 67888888887776543333333 


Q ss_pred             -cccCCcEEEeec
Q psy12210        194 -ELFRLRTLRISE  205 (405)
Q Consensus       194 -~l~~L~~L~l~~  205 (405)
                       .+++|+.|+++.
T Consensus       216 ~~lp~L~~L~L~~  228 (362)
T 2ra8_A          216 SDLPNLEKLVLYV  228 (362)
T ss_dssp             SBCTTCCEEEEEC
T ss_pred             ccCCCCcEEEEec
Confidence             578888888754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=1.3e-05  Score=70.93  Aligned_cols=60  Identities=27%  Similarity=0.395  Sum_probs=28.8

Q ss_pred             CccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeec-ccccCCCCCCCEEEccCCcCc
Q psy12210        125 ATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVA-VDAFQGLKSLTSLTLNNNNLT  185 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~  185 (405)
                      .|+.|+|++|.|+.++.  ..+..+++|+.|+|++|.+.++. -..+.++ +|++|++++|.+.
T Consensus       171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            45555555555555442  22344555555555555555441 1122222 5555555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=1.6e-05  Score=65.39  Aligned_cols=84  Identities=14%  Similarity=0.141  Sum_probs=70.0

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCc-ceeecccccCCC----CCCCEEEccCCc-CcccChhhhhcccC
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQ-ISKVAVDAFQGL----KSLTSLTLNNNN-LTYLPDGVFAELFR  197 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-l~~l~~~~f~~l~~  197 (405)
                      ..|+.|+++++.|+...-..+.++++|+.|+|++|. ++...-..+..+    ++|++|++++|. +++-.-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999998777778999999999999995 766444445543    479999999986 98777677888999


Q ss_pred             CcEEEeecCc
Q psy12210        198 LRTLRISENS  207 (405)
Q Consensus       198 L~~L~l~~N~  207 (405)
                      |+.|++++++
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999976

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.61  E-value=1.9e-05  Score=66.09  Aligned_cols=82  Identities=11%  Similarity=0.064  Sum_probs=57.3

Q ss_pred             ceEEcCCCCccccC-----CCC--CCCccEEEccCCCCCCCCc----ccccCCCCCcEEec--CCCcceeec----cccc
Q psy12210        106 GIVDCREKGLNKVP-----ILL--PEATTELRLEQNDITELPP----KAFANYKRLRRIDL--SKNQISKVA----VDAF  168 (405)
Q Consensus       106 ~~l~~~~n~l~~lp-----~~~--~~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~l--s~n~l~~~~----~~~~  168 (405)
                      +.+++++|.++.-.     ..+  .+.++.|+|++|.|.....    ..+...+.|++|++  ++|.+....    ...+
T Consensus        68 ~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L  147 (185)
T 1io0_A           68 KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML  147 (185)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred             CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence            45556666554311     111  2579999999999987432    34667789999999  889988643    2445


Q ss_pred             CCCCCCCEEEccCCcCccc
Q psy12210        169 QGLKSLTSLTLNNNNLTYL  187 (405)
Q Consensus       169 ~~l~~L~~L~l~~n~l~~l  187 (405)
                      ...++|++|++++|.+..-
T Consensus       148 ~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          148 EKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHCSSCCEEECCCSSHHHH
T ss_pred             HhCCCcCEEeccCCCCChH
Confidence            5678999999999988643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.37  E-value=0.00015  Score=64.00  Aligned_cols=79  Identities=20%  Similarity=0.258  Sum_probs=59.3

Q ss_pred             EEccCCCCCCCCc---ccccCCCCCcEEecCCCcceeecc--cccCCCCCCCEEEccCCcCcccChhhhhccc--CCcEE
Q psy12210        129 LRLEQNDITELPP---KAFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNNLTYLPDGVFAELF--RLRTL  201 (405)
Q Consensus       129 L~L~~n~i~~l~~---~~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~--~L~~L  201 (405)
                      ++++.|....++.   ....++++|+.|+|++|.++.+.+  ..+..+++|+.|++++|+++++..  +..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceE
Confidence            4555564433332   122568899999999999998753  456689999999999999998832  45555  99999


Q ss_pred             EeecCccc
Q psy12210        202 RISENSFI  209 (405)
Q Consensus       202 ~l~~N~l~  209 (405)
                      ++.+|++.
T Consensus       226 ~L~~Npl~  233 (267)
T 3rw6_A          226 WLDGNSLC  233 (267)
T ss_dssp             ECTTSTTG
T ss_pred             EccCCcCc
Confidence            99999975

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.77  E-value=0.0017  Score=60.30  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             CCccEEEccCCCCCCCCccccc--CCCCCcEEecCC--Cc------ceeeccccc--CCCCCCCEEEccCCcCcccChhh
Q psy12210        124 EATTELRLEQNDITELPPKAFA--NYKRLRRIDLSK--NQ------ISKVAVDAF--QGLKSLTSLTLNNNNLTYLPDGV  191 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~--~l~~L~~L~ls~--n~------l~~~~~~~~--~~l~~L~~L~l~~n~l~~l~~~~  191 (405)
                      ++|+.|++..+.+..-....+.  .+++|+.|+|+.  +.      +..+.+ .+  ..+++|+.|++.+|.+.......
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-LFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-GSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-HHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            4677777776665432222232  566777776642  11      111111 12  23567777777777665322222


Q ss_pred             hh---cccCCcEEEeecCccc
Q psy12210        192 FA---ELFRLRTLRISENSFI  209 (405)
Q Consensus       192 f~---~l~~L~~L~l~~N~l~  209 (405)
                      +.   .+++|+.|+++.|.+.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCB
T ss_pred             HHhCccCCCCCEEECCCCCCC
Confidence            22   3567777777766543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.55  E-value=0.00063  Score=55.84  Aligned_cols=82  Identities=9%  Similarity=0.086  Sum_probs=60.8

Q ss_pred             cCceeecCCCCCCcCCC---CCCCCceEEEEE-e-cceeeeccchhccccccccCC----cc-ceEEecCC-CCcccCcc
Q psy12210        302 ADGIVDCREKGLNKVPI---LLPEATTELTYM-V-SIDRVDKVLLYSYISNNFKRW----TN-RSRRLEQN-DITELPPK  370 (405)
Q Consensus       302 ~l~~l~l~~n~l~~~p~---~~~~~l~~L~l~-n-~i~~i~~~~~~~~~~~~~~~l----~~-~~L~L~~N-~i~~i~~~  370 (405)
                      .++.||++++.++..-.   .-.+.|++|+|+ + .|++-.        -..++.+    ++ +.|+|+++ +|+.-...
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~g--------L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC--------LERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHH--------HHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHH--------HHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            69999999998775321   224789999999 5 466543        2344443    46 99999998 69987777


Q ss_pred             cccCCccCceeecccCC-Cccc
Q psy12210        371 AFANYKRLRRIRLEQND-ITEL  391 (405)
Q Consensus       371 ~~~~l~~L~~L~L~~N~-l~~i  391 (405)
                      .+..+++|+.|+|+++. ++..
T Consensus       134 ~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHhcCCCCCEEECCCCCCCCch
Confidence            78889999999999986 6653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.83  E-value=0.02  Score=47.81  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=56.8

Q ss_pred             CCccEEEccCCCCCCCCcccc----cCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccCh------
Q psy12210        124 EATTELRLEQNDITELPPKAF----ANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPD------  189 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~----~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~------  189 (405)
                      ..|+.|+|++|.|.+.....+    ..-+.|+.|+|++|.|.....    +++..-+.|++|++++|....+..      
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i  149 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM  149 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence            367888888888875443333    344678888888888875332    356666779999998653322221      


Q ss_pred             -hhhhcccCCcEEEeecCccc
Q psy12210        190 -GVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       190 -~~f~~l~~L~~L~l~~N~l~  209 (405)
                       .++..-+.|+.|+++.|...
T Consensus       150 a~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          150 MMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhCCCcCeEeccCCCcc
Confidence             33455578999999877543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.17  E-value=0.2  Score=36.62  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=39.3

Q ss_pred             CCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        133 QNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       133 ~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      +..++.|...+|.++.+|+.+.|.. .++.|...+|.+|.+|+.+.+.....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~P   55 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGEDP   55 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSCG
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCCC
Confidence            5567788888888888888888875 46677778888888888888866543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.34  E-value=0.067  Score=44.58  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=59.7

Q ss_pred             CCccEEEccCC-CCCCCCc----ccccCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccChhh---
Q psy12210        124 EATTELRLEQN-DITELPP----KAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPDGV---  191 (405)
Q Consensus       124 ~~L~~L~L~~n-~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~~~---  191 (405)
                      +.|+.|+|+++ .|.....    ..+..-..|+.|+|++|.+.....    +.+..-+.|+.|++++|.|+.-...+   
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            47899999885 7764322    235566789999999999986443    33445678999999999998655433   


Q ss_pred             -hhcccCCcEEEeecC
Q psy12210        192 -FAELFRLRTLRISEN  206 (405)
Q Consensus       192 -f~~l~~L~~L~l~~N  206 (405)
                       +..-+.|+.|++++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence             334467999999865

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=90.62  E-value=0.21  Score=36.52  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             cccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCC
Q psy12210        346 SNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQND  387 (405)
Q Consensus       346 ~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~  387 (405)
                      ...|.++.+ +.+.+.. .++.|...+|.+|.+|+.+.+.+..
T Consensus        13 ~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A           13 KSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             SCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             HHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence            788999999 9999986 5999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-24
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-19
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-09
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-17
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (249), Expect = 1e-24
 Identities = 61/310 (19%), Positives = 95/310 (30%), Gaps = 25/310 (8%)

Query: 95  PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
           P CP  C+C   +V C + GL KVP  LP  T  L L+ N ITE+    F N K L  + 
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLI 61

Query: 155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHL 214
           L  N+ISK++  AF  L  L  L L+ N L  LP+ +   L  LR               
Sbjct: 62  LINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN 121

Query: 215 SWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDF 274
                 +       L +        +G   L       + + +++ T  +      +   
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKL----SYIRIADTNITTIPQGLPPSLTELH 177

Query: 275 HPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSID 334
              N                           +      ++ V       T  L  +   +
Sbjct: 178 LDGNKITKVDA---------ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 335 RVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFA------NYKRLRRIRLEQNDI 388
                 L             +   L  N+I+ +    F              + L  N +
Sbjct: 229 NK----LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

Query: 389 T--ELPPKAF 396
              E+ P  F
Sbjct: 285 QYWEIQPSTF 294

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 9e-11
 Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 30/113 (26%)

Query: 293 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRW 352
           P CP  C+C   +V C + GL KVP  LP  T  L                         
Sbjct: 2   PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL------------------------- 36

Query: 353 TNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM 405
                 L+ N ITE+    F N K L  + L  N I+++ P AFA   +L R+
Sbjct: 37  -----DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 84

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 38/221 (17%), Positives = 76/221 (34%), Gaps = 14/221 (6%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L NN +T + DG F  L  L TL +       +              +L    +    S 
Sbjct: 38  LQNNKITEIKDGDFKNLKNLHTLILI-----NNKISKISPGAFAPLVKL----ERLYLSK 88

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
            + + + +      +     E    +                +     K           
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 125 AT--TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN 182
               + +R+   +IT +P     +   L  + L  N+I+KV   + +GL +L  L L+ N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 183 NLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKR 223
           +++ + +G  A    LR L ++ N  +        H++++ 
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 84.1 bits (206), Expect = 1e-19
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 25/189 (13%)

Query: 97  CPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQN-DITELPPKAFANYKRLRRIDL 155
           CP  C C    VDC  +GL ++P  +P  TTEL L  N          F     L +++L
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61

Query: 156 SK------------------------NQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGV 191
            +                        N+I +++   F GL  L +L L +N ++ +  G 
Sbjct: 62  KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121

Query: 192 FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHE 251
           F  L  L +L ++ N F C+CHL+W   WL++    G   +C APS ++   I D+P  E
Sbjct: 122 FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

Query: 252 FKCSGSSME 260
           FKCS  + E
Sbjct: 182 FKCSSENSE 190

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 19/130 (14%)

Query: 295 CPHPCRCADGIVDCREKGLNKVPILLPEATTEL-------------------TYMVSIDR 335
           CP  C C    VDC  +GL ++P  +P  TTEL                    ++V ++ 
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLEL 61

Query: 336 VDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKA 395
               L     +        +  +L +N I E+  K F    +L+ + L  N I+ + P +
Sbjct: 62  KRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121

Query: 396 FANYKRLRRM 405
           F +   L  +
Sbjct: 122 FEHLNSLTSL 131

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 8e-09
 Identities = 29/79 (36%), Positives = 44/79 (55%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L +N ++ +  G F  L  L +L ++ N F C+CHL+W   WL++    G   +C APS 
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK 168

Query: 65  IKGQNILDIPEHEFKCSGP 83
           ++   I D+P  EFKCS  
Sbjct: 169 VRDVQIKDLPHSEFKCSSE 187

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (209), Expect = 3e-19
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 17/255 (6%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L+ N ++++P   F     L  L +  N        ++                      
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-----------LLEQLDL 87

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
                +  +    F   G +     +                 +       N +  L  +
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 125 ATT------ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLT 178
                     L L  N I+ +P +AF     L R+ L +N+++ V   AF+ L  L +L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 238
           L  NNL+ LP    A L  L+ LR+++N ++CDC    L  WL+++        C  P  
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 239 IKGQNILDIPEHEFK 253
           + G+++  +  ++ +
Sbjct: 268 LAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 2e-11
 Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 4/128 (3%)

Query: 97  CPHPCRCADG---IVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
           CP  C C +       C ++GL  VP+ +P A+  + L  N I+ +P  +F   + L  +
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 154 D-LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC 212
              S       A               +N  L  +    F  L RL TL +         
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 213 HLSWLHRW 220
              +    
Sbjct: 122 PGLFRGLA 129

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 33/88 (37%)

Query: 295 CPHPCRCADG---IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKR 351
           CP  C C +       C ++GL  VP+ +P A+  +                        
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRI------------------------ 37

Query: 352 WTNRSRRLEQNDITELPPKAFANYKRLR 379
                  L  N I+ +P  +F   + L 
Sbjct: 38  ------FLHGNRISHVPAASFRACRNLT 59

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 2e-17
 Identities = 47/277 (16%), Positives = 80/277 (28%), Gaps = 49/277 (17%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
           L+ N L            RL  L +             L       P LG          
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-------PVLGTLDLSHNQLQ 90

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
                                              P      +   R   L    +    
Sbjct: 91  --------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
              EL L+ N++  LPP       +L ++ L+ N ++++      GL++L +L L  N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 185 TYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNI 244
             +P G F     L    +  N ++C+C + +  RWL+         K          N+
Sbjct: 185 YTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNV 243

Query: 245 LDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCP 281
             +     +C  S          ++     +P   CP
Sbjct: 244 ASV-----QCDNS----------DKFPVYKYPGKGCP 265

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (119), Expect = 9e-08
 Identities = 17/65 (26%), Positives = 30/65 (46%)

Query: 95  PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRID 154
           P C      +   V+C ++ L  +P  LP+ TT L L +N +          Y RL +++
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 155 LSKNQ 159
           L + +
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 28/241 (11%), Positives = 51/241 (21%), Gaps = 43/241 (17%)

Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISE 205
                  ++  K  ++ +  D     K  T L L+ N L            RL  L +  
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 206 NSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKI 265
                      L           L T   + + ++   +L            S    + +
Sbjct: 65  AELTKLQVDGTLPV---------LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 266 YREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATT 325
                                         P P               N +  L      
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE------KLSLANNNLTELPAGLLN 169

Query: 326 ELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQ 385
            L  + ++                         L++N +  +P   F +   L    L  
Sbjct: 170 GLENLDTLL------------------------LQENSLYTIPKGFFGS-HLLPFAFLHG 204

Query: 386 N 386
           N
Sbjct: 205 N 205

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 1e-13
 Identities = 37/155 (23%), Positives = 52/155 (33%), Gaps = 7/155 (4%)

Query: 97  CPHPCRC-ADGIVDCREKGLNKVPILLPEATTELRLE---QNDITELPPKAFANYKRLRR 152
           CP  C       + C   G       LP A     L    Q  +  L  +       LR 
Sbjct: 1   CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 153 IDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDC 212
           + + K+ +  VA DAF     L+ L L+ N L  L      +   L+ L +S N   C C
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV-QGLSLQELVLSGNPLHCSC 119

Query: 213 HLSWLHRWLKRYPRLGLY--TKCFAPSHIKGQNIL 245
            L WL RW +           +C     +      
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 22/201 (10%)

Query: 6   NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI 65
            NN ++ +          L  L ++ N       L+ L             +     S +
Sbjct: 205 TNNQISDITPLGILT--NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 262

Query: 66  KGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEA 125
                L +  ++     P+   T     E +       +                     
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN-------------- 308

Query: 126 TTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT 185
            T L L  N+I+++ P   ++  +L+R+  + N++S V   +   L ++  L+  +N ++
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQIS 364

Query: 186 YLPDGVFAELFRLRTLRISEN 206
            L     A L R+  L +++ 
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 37/270 (13%), Positives = 83/270 (30%), Gaps = 25/270 (9%)

Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDG 190
           L + ++T+   +   +  ++  +   +  I  +  D  + L +LT +  +NN LT +   
Sbjct: 29  LGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP- 83

Query: 191 VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEH 250
               L +L  + ++ N       L+ L             T      ++   N L++  +
Sbjct: 84  -LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 251 EFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCRE 310
                         I      T     +           A   +       ++ + D   
Sbjct: 143 TISD----------ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 311 KGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSR-------RLEQND 363
                    L     +++ +  +  +  +   S   N  K     +         L  N 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 252

Query: 364 ITELPPKAFANYKRLRRIRLEQNDITELPP 393
           I+ L P   +   +L  ++L  N I+ + P
Sbjct: 253 ISNLAP--LSGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 36/316 (11%), Positives = 88/316 (27%), Gaps = 47/316 (14%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
           T L+ ++  I  +          L +I+ S NQ++ +     + L  L  + +NNN +  
Sbjct: 47  TTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIAD 102

Query: 187 LPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILD 246
           +            TL  ++ + I           L+            +      Q    
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 247 IPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADG-- 304
               + K   +              +D          +       + S   P        
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 222

Query: 305 ---IVDCREKGLNKVPIL---------------------------LPEATTELTYMVSID 334
              +   + K +  +  L                           L     +++ +  + 
Sbjct: 223 ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 282

Query: 335 RVDKVLLYSYISNNFKRWTNRSR-------RLEQNDITELPPKAFANYKRLRRIRLEQND 387
            +  +       N  +  +  S         L  N+I+++ P   ++  +L+R+    N 
Sbjct: 283 GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNK 340

Query: 388 ITELPPKAFANYKRLR 403
           ++++   + AN   + 
Sbjct: 341 VSDVS--SLANLTNIN 354

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 5e-08
 Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 2/200 (1%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
                L  +  G F+    L  + IS+N  +            K +             +
Sbjct: 36  FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 95

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
            +    L   ++    +  +         +                         + L  
Sbjct: 96  PEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 153

Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
            +  L L +N I E+   AF   +         N + ++  D F G      L ++   +
Sbjct: 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 213

Query: 185 TYLPDGVFAELFRLRTLRIS 204
             LP      L +LR     
Sbjct: 214 HSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 38/298 (12%), Positives = 71/298 (23%), Gaps = 59/298 (19%)

Query: 97  CPHP-CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDL 155
           C H  C C++ +  C+E  + ++P  LP    EL                          
Sbjct: 1   CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIEL------------------------RF 36

Query: 156 SKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLS 215
              ++  +   AF G   L         ++        E      L       I   +  
Sbjct: 37  VLTKLRVIQKGAFSGFGDLEK-----IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 91

Query: 216 WLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFH 275
                        L     + + IK    +       K      +  +    E  S    
Sbjct: 92  LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 151

Query: 276 PYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYMVSIDR 335
            + S  +           +C       D +       L ++P  +    +    +     
Sbjct: 152 SFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL----- 206

Query: 336 VDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP 393
                                  + +  I  LP     N K+LR       ++ +LP 
Sbjct: 207 ----------------------DISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT 240

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 14/186 (7%)

Query: 4   TLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPS 63
           +     +T +       L  L  L + +N       L  L +  +            A +
Sbjct: 47  SAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIA 104

Query: 64  HIKGQNILDIPEHEFKCSGPVEKPTGECA--------AEPSCPHPCRCADGIVDCREKGL 115
            ++    LD+   +     P+   +               S          +     +  
Sbjct: 105 GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS 164

Query: 116 NKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT 175
           +  P+      T L+ + N I+++ P   A+   L  + L  NQIS V         +L 
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLF 220

Query: 176 SLTLNN 181
            +TL N
Sbjct: 221 IVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 30/268 (11%), Positives = 64/268 (23%), Gaps = 56/268 (20%)

Query: 136 ITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAEL 195
           I  + P          +I   K+ ++         L  +T+L+     +T +       L
Sbjct: 9   INVIFPDP--ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYL 62

Query: 196 FRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS 255
             L  L + +N       L  L +                                    
Sbjct: 63  NNLIGLELKDNQITDLAPLKNLTKI----------------------------------- 87

Query: 256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNK 315
                       E   +     N   +         + +                + L  
Sbjct: 88  -----------TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 316 VPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLEQNDITELPPKAFANY 375
               +   +                  S ++         + + + N I+++ P   A+ 
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 376 KRLRRIRLEQNDITELPPKAFANYKRLR 403
             L  + L+ N I+++ P   AN   L 
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLF 220

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 5e-07
 Identities = 25/284 (8%), Positives = 60/284 (21%), Gaps = 15/284 (5%)

Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNL 184
             +   D   +          ++ I LS N I   A     +     K L     ++   
Sbjct: 13  DAITTEDEKSVF-AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 185 TYLPDGVFAELFRLRTLRISENSF--ICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQ 242
             + D +   L  L    +       +     ++     +               ++   
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 243 NILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCA 302
            +      +   +   +    K              +        E A            
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 303 DG--IVDCREKGLNKVPILLPEATTELTYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLE 360
                    E   + +   L          +  +    +   +           R   L 
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 361 QNDITELPPKAFANY------KRLRRIRLEQNDITELPPKAFAN 398
              ++     A  +         L+ +RL+ N+I     +    
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 295

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 131 LEQNDITELPPKAFANY------KRLRRIDLSKNQISKVAVDA-----FQGLKSLTSLTL 179
           L    ++     A  +         L+ + L  N+I   AV        + +  L  L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 180 NNNNLTYLPDGV--FAELFRLR 199
           N N  +   D V    E+F  R
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTR 331

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 130 RLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD 189
           +L    I +     + N  R R +DL   +I  +  +    L    ++  ++N +  L  
Sbjct: 2   KLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG 58

Query: 190 GVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL 227
             F  L RL+TL ++ N                    L
Sbjct: 59  --FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 94

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 20/177 (11%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
            NN+++  +       L  +  L ++ N       L+ L      +          +   
Sbjct: 53  ANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD 110

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
           +K    L +  +       +       +                  +             
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK------------- 157

Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
               L LE N I+++ P   A   +L+ + LSKN IS   + A  GLK+L  L L +
Sbjct: 158 -LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 9/99 (9%)

Query: 122 LPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNN 181
           L   T  +      I          +    + +L K  ++         L S+  +  NN
Sbjct: 3   LGSETITVPTPIKQIFSDD-----AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANN 55

Query: 182 NNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRW 220
           +++  +       L  +  L ++ N       L+ L   
Sbjct: 56  SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNL 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 13/164 (7%), Positives = 41/164 (25%), Gaps = 10/164 (6%)

Query: 127 TELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNN 181
             L ++  ++++    +     ++ + + L    +++        A +   +L  L L +
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 182 NNLT-----YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP 236
           N L       +  G+     +++ L +                         L+      
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124

Query: 237 SHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSC 280
                Q + +                  +    C        + 
Sbjct: 125 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK 168

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 26/180 (14%), Positives = 46/180 (25%), Gaps = 10/180 (5%)

Query: 34  FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAA 93
                 L  L          G    C        Q      +     +      +   A 
Sbjct: 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 338

Query: 94  EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFA----NYKR 149
                      + + D   + L +           L L   D+++    + A        
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 150 LRRIDLSKNQISKVAVDAF-----QGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRI 203
           LR +DLS N +    +        Q    L  L L +   +  + D + A      +LR+
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 150 LRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFR----LRTLRIS 204
           ++ +D+   ++S     +    L+    + L++  LT       +   R    L  L + 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 205 ENSFICDCHLSWLHRWLK 222
            N  + D  +  + + L+
Sbjct: 64  SNE-LGDVGVHCVLQGLQ 80

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 9e-06
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 12/78 (15%)

Query: 127 TELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY 186
            EL +  N + ELP    A   RL R+  S N +++V     +  ++L  L +  N L  
Sbjct: 287 EELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP----ELPQNLKQLHVEYNPLRE 338

Query: 187 LPDGVFAELFRLRTLRIS 204
            PD        +  LR++
Sbjct: 339 FPD----IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 44/311 (14%), Positives = 86/311 (27%), Gaps = 38/311 (12%)

Query: 109 DCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF 168
           + RE  ++++   L     EL L    ++ LP         L  +  S N ++++     
Sbjct: 23  EQREMAVSRLRDCLDRQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELP---- 74

Query: 169 QGLKSLTSLTLNNNNLTYLP------------DGVFAELFRLRTLRISENSFICDCHLSW 216
           +  +SL SL ++NNNL  L             +    +L  L+     +   + +  L  
Sbjct: 75  ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK 134

Query: 217 LHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHP 276
           L         +                      +    S   +           + +   
Sbjct: 135 LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 277 YNSCPVEKPT---------GECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTEL 327
                ++                  P  P      +   +           L     +E 
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 328 TYMVSIDRVDKVLLYSYISNNFKRWTNRSRRLE-----QNDITELPPKAFANYKRLRRIR 382
            +    +    +   +  SN  +   +    LE      N + ELP    A   RL R+ 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLI 310

Query: 383 LEQNDITELPP 393
              N + E+P 
Sbjct: 311 ASFNHLAEVPE 321

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 17/175 (9%), Positives = 38/175 (21%), Gaps = 8/175 (4%)

Query: 34  FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGPVEKPTGECAA 93
                               G       P       +  I           + P    A 
Sbjct: 170 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 229

Query: 94  EPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRI 153
                +     +         +++                N  +            L  +
Sbjct: 230 NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEEL 289

Query: 154 DLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSF 208
           ++S N++ ++          L  L  + N+L  +P+        L+ L +  N  
Sbjct: 290 NVSNNKLIELP----ALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPL 336

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 26/109 (23%)

Query: 129 LRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL-------------- 174
           L L   D+T L          +  +DLS N++  +   A   L+ L              
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD 59

Query: 175 --------TSLTLNNNNLTYLPD-GVFAELFRLRTLRISENSFICDCHL 214
                     L L NN L             RL  L +  NS   +  +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC 210
           R + L+   ++ +     + L  +T L L++N L      +   L  LR L + + S   
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA 54

Query: 211 DCHLSWLHRW 220
             ++  +   
Sbjct: 55  LENVDGVANL 64

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 5e-05
 Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 2/182 (1%)

Query: 121 LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAF-QGLKSLTSLTL 179
           LL +     R  ++ + +   + F+ + R++ +DLS + I    +         L +L+L
Sbjct: 20  LLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 78

Query: 180 NNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI 239
               L+       A+   L  L +S  S   +  L  L     R   L L          
Sbjct: 79  EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 138

Query: 240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPC 299
               +  + E   + + S      +           P         +     +       
Sbjct: 139 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 198

Query: 300 RC 301
             
Sbjct: 199 LN 200

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 29/173 (16%), Positives = 53/173 (30%), Gaps = 20/173 (11%)

Query: 5   LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSH 64
            +   +  +       L  L  +  S N       L  L + +               ++
Sbjct: 47  ADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN 104

Query: 65  IKGQNILDIPEHEFKCSGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE 124
           +     L +  ++     P++  T     E S       +        + LN        
Sbjct: 105 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNF------- 157

Query: 125 ATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSL 177
                    N +T+L P   AN   L R+D+S N++S   +     L +L SL
Sbjct: 158 -------SSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 14/136 (10%), Positives = 35/136 (25%), Gaps = 4/136 (2%)

Query: 145 ANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRIS 204
                  +  L K  ++     +   L  +T+L  +   +  +       L  L  +  S
Sbjct: 15  TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 70

Query: 205 ENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSK 264
            N       L  L + +               +++     L +  ++           + 
Sbjct: 71  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 265 IYREECSTDFHPYNSC 280
              E  S      ++ 
Sbjct: 131 NRLELSSNTISDISAL 146

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 146 NYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTY-LPDGVFAELFRLRTLRIS 204
             K L  +DL  N+I          LK L SL ++ NNL   +P      L R      +
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYA 299

Query: 205 ENSFICDCHLS 215
            N  +C   L 
Sbjct: 300 NNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 131 LEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL 184
           L  N I    P+     K L  +++S N +    +     L+        NN  
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANNKC 303

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.99
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.77
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.1
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.03

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=4.3e-27  Score=214.56  Aligned_cols=258  Identities=24%  Similarity=0.330  Sum_probs=194.4

Q ss_pred             CCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCC
Q psy12210         95 PSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSL  174 (405)
Q Consensus        95 ~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L  174 (405)
                      .+||..|.|..+.++|++++++++|..+++++++|++++|+|+.+++.+|.++++|++|++++|.+..+.+..|.++++|
T Consensus         2 ~~~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L   81 (305)
T d1xkua_           2 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL   81 (305)
T ss_dssp             CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCCCCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCcc
Confidence            58999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccc
Q psy12210        175 TSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC  254 (405)
Q Consensus       175 ~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~  254 (405)
                      +.|++++|+++.++...   ...++.++...|.+.....      .........      .............       
T Consensus        82 ~~L~l~~n~l~~l~~~~---~~~l~~L~~~~n~l~~l~~------~~~~~~~~~------~~l~~~~n~~~~~-------  139 (305)
T d1xkua_          82 ERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRK------SVFNGLNQM------IVVELGTNPLKSS-------  139 (305)
T ss_dssp             CEEECCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCH------HHHTTCTTC------CEEECCSSCCCGG-------
T ss_pred             CEecccCCccCcCccch---hhhhhhhhccccchhhhhh------hhhhccccc------ccccccccccccc-------
Confidence            99999999999998754   4678899999887652110      000000000      0000000000000       


Q ss_pred             cCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEEE-
Q psy12210        255 SGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTYM-  330 (405)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~-  330 (405)
                           ......+..........+..+.+..++...          ..+++.|++++|..+..+...+   +.++.|+++ 
T Consensus       140 -----~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~----------~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~  204 (305)
T d1xkua_         140 -----GIENGAFQGMKKLSYIRIADTNITTIPQGL----------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  204 (305)
T ss_dssp             -----GBCTTGGGGCTTCCEEECCSSCCCSCCSSC----------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             -----CCCccccccccccCccccccCCccccCccc----------CCccCEEECCCCcCCCCChhHhhcccccccccccc
Confidence                 000011222233344445555555443221          2368899999998887765433   578899999 


Q ss_pred             ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCC
Q psy12210        331 VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN  398 (405)
Q Consensus       331 n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~  398 (405)
                      |.+.+++        +.+|.++++ ++|+|++|+|+.++. +|.++++|+.|+|++|+|++++..+|..
T Consensus       205 n~l~~~~--------~~~~~~l~~L~~L~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~  264 (305)
T d1xkua_         205 NSISAVD--------NGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP  264 (305)
T ss_dssp             SCCCEEC--------TTTGGGSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             ccccccc--------cccccccccceeeeccccccccccc-ccccccCCCEEECCCCccCccChhhccC
Confidence            9999998        789999999 999999999999975 5888999999999999999998877754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.1e-27  Score=210.90  Aligned_cols=113  Identities=30%  Similarity=0.568  Sum_probs=105.0

Q ss_pred             CCCCccccC---ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCC
Q psy12210         97 CPHPCRCAD---GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKS  173 (405)
Q Consensus        97 ~p~~~~c~~---~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~  173 (405)
                      ||..|.|..   ..++|++.+++++|..+|..+++|+|++|.|+.+++..|.++++|+.|++++|.+..+.+..+.++..
T Consensus         2 cp~~C~C~~~~~~~v~c~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~   81 (284)
T d1ozna_           2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL   81 (284)
T ss_dssp             CCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cCCCCEEcCCCCeEEEcCCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccc
Confidence            999999974   58999999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCEEEc-cCCcCcccChhhhhcccCCcEEEeecCccc
Q psy12210        174 LTSLTL-NNNNLTYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       174 L~~L~l-~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      +..+.+ ..+.++.+++.+|+.+++|+.|++++|.+.
T Consensus        82 ~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~  118 (284)
T d1ozna_          82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ  118 (284)
T ss_dssp             CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccccccccccccchhhcccccCCEEecCCcccc
Confidence            999986 466799999999999999999999998754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=191.82  Aligned_cols=221  Identities=22%  Similarity=0.360  Sum_probs=169.7

Q ss_pred             CCCC-ccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCccee-ecccccCCCCCC
Q psy12210         97 CPHP-CRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISK-VAVDAFQGLKSL  174 (405)
Q Consensus        97 ~p~~-~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L  174 (405)
                      |++. |+|..+.++|++.+++++|..++.++++|++++|.|+.+++.+|.++++|++|++++|.+.. +++.+|.+++++
T Consensus         1 ~~~~~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l   80 (242)
T d1xwdc1           1 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL   80 (242)
T ss_dssp             CCCSSEEECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTC
T ss_pred             CcCCcCCCcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccc
Confidence            6655 99999999999999999999999999999999999999999899999999999999998865 567789999999


Q ss_pred             CEEEcc-CCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCccc
Q psy12210        175 TSLTLN-NNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFK  253 (405)
Q Consensus       175 ~~L~l~-~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~  253 (405)
                      +++.+. .|.+..+++++|..+++|+.+++.+|.+..                                    .+...+.
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~------------------------------------~~~~~~~  124 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH------------------------------------LPDVHKI  124 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS------------------------------------CCCCTTT
T ss_pred             ccccccccccccccccccccccccccccccchhhhcc------------------------------------ccccccc
Confidence            999975 467999999999999999999999987541                                    1110000


Q ss_pred             ccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC----CCceEEEE
Q psy12210        254 CSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP----EATTELTY  329 (405)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~----~~l~~L~l  329 (405)
                      ..                                            ...+..+...++.+..++...+    ..+..|++
T Consensus       125 ~~--------------------------------------------l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1         125 HS--------------------------------------------LQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             CB--------------------------------------------SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             cc--------------------------------------------ccccccccccccccccccccccccccccceeeec
Confidence            00                                            0023344455556666554432    35667777


Q ss_pred             E-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        330 M-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       330 ~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      + |+++.++        ...|..... +.+++++|+|+.++...|.++++|+.|+|++|+|+++++..|.++++|+++
T Consensus       161 ~~n~l~~i~--------~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l  230 (242)
T d1xwdc1         161 NKNGIQEIH--------NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR  230 (242)
T ss_dssp             CSSCCCEEC--------TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred             ccccccccc--------cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence            7 7788777        555555544 555677778888887778888888888888888888887778888877764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-24  Score=193.79  Aligned_cols=239  Identities=22%  Similarity=0.340  Sum_probs=192.7

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCC-CcccCCcccccCCCcccc
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAP-SHIKGQNILDIPEHEFKC   80 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~l~~~~~~~   80 (405)
                      .|+|++|+|+++++.+|.++++|++|++++|.+.......+.            ....... .....+.++.++...|..
T Consensus        36 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~------------~~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          36 RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT------------GLALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT------------TCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             EEECcCCcCCCCCHHHhhcccccccccccccccccccccccc------------ccccccccccccccccccccchhhcc
Confidence            589999999999999999999999999999998742221110            0000111 123456666666665554


Q ss_pred             C-CCCCCCCCCCCCCCCCCCCccc--cCceEEcCCCCccccCCCC---CCCccEEEccCCCCCCCCcccccCCCCCcEEe
Q psy12210         81 S-GPVEKPTGECAAEPSCPHPCRC--ADGIVDCREKGLNKVPILL---PEATTELRLEQNDITELPPKAFANYKRLRRID  154 (405)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~p~~~~c--~~~~l~~~~n~l~~lp~~~---~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~  154 (405)
                      . .+....+..+......+....+  .++.+++++|.++.+|...   .++++.|++++|.++.+++..|.++++|+.++
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            3 2334445555444444433332  2499999999999998654   35899999999999999999999999999999


Q ss_pred             cCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccC
Q psy12210        155 LSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCF  234 (405)
Q Consensus       155 ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~  234 (405)
                      +++|.+..+.+..|.++++|++|++++|.+..+++.+|+.+++|+.|++++|++.|+|+++|+..|+...........|.
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~  263 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCS  263 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEE
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888888898


Q ss_pred             CCCCCCCCcccccCCCcc
Q psy12210        235 APSHIKGQNILDIPEHEF  252 (405)
Q Consensus       235 ~~~~l~~~~l~~l~~~~~  252 (405)
                      .|..+++..+.++....+
T Consensus       264 ~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         264 LPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             ESGGGTTCBGGGSCGGGS
T ss_pred             CchHHcCCccccCCHHHC
Confidence            899999999988887765

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.4e-24  Score=190.43  Aligned_cols=197  Identities=22%  Similarity=0.292  Sum_probs=169.1

Q ss_pred             CccccC----ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCC
Q psy12210        100 PCRCAD----GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLT  175 (405)
Q Consensus       100 ~~~c~~----~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~  175 (405)
                      .|.|..    ..++|++++++++|..+|+++++|+|++|.|+.+++..|.++++|++|++++|.++.+++  +..+++|+
T Consensus         3 ~C~~~~~~~~~~v~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~   80 (266)
T d1p9ag_           3 ICEVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (266)
T ss_dssp             SSEEECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccEEcccCCCeEEEccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccc
Confidence            566754    678999999999999999999999999999999999899999999999999999998864  67899999


Q ss_pred             EEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCccccc
Q psy12210        176 SLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS  255 (405)
Q Consensus       176 ~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  255 (405)
                      +|++++|+++..+. .+..+++|+.|++++|.+.                                    .+....+...
T Consensus        81 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~------------------------------------~~~~~~~~~l  123 (266)
T d1p9ag_          81 TLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLT------------------------------------SLPLGALRGL  123 (266)
T ss_dssp             EEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCC------------------------------------CCCSSTTTTC
T ss_pred             cccccccccccccc-ccccccccccccccccccc------------------------------------eeeccccccc
Confidence            99999999998876 5788999999999998743                                    2222222111


Q ss_pred             CccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCC---CCceEEEEE-e
Q psy12210        256 GSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELTYM-V  331 (405)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~---~~l~~L~l~-n  331 (405)
                                                                   .+++.+++++|.++.+|...+   +.++.++++ |
T Consensus       124 ---------------------------------------------~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_         124 ---------------------------------------------GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             ---------------------------------------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ---------------------------------------------cccccccccccccceeccccccccccchhcccccc
Confidence                                                         158899999999999987765   578999999 9


Q ss_pred             cceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCc
Q psy12210        332 SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDIT  389 (405)
Q Consensus       332 ~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~  389 (405)
                      +++.++        +..|..+++ ++|+|++|+|+.++++.| .+++|+.|+|++|.+.
T Consensus       159 ~l~~~~--------~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         159 NLTELP--------AGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSCCC--------TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             cccccC--------ccccccccccceeecccCCCcccChhHC-CCCCCCEEEecCCCCC
Confidence            999998        788999999 999999999999998755 5899999999999865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.2e-22  Score=182.99  Aligned_cols=270  Identities=17%  Similarity=0.215  Sum_probs=187.8

Q ss_pred             cccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCc-cccccccCCCcccCCcccccCCCccccC
Q psy12210          3 RTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL-GLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         3 L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      +|-++++++++|++ +  .+++++|++++|+|+.             .+.. .......+.+.++++.+..++...|...
T Consensus        15 ~~C~~~~L~~lP~~-l--~~~l~~L~Ls~N~i~~-------------l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l   78 (305)
T d1xkua_          15 VQCSDLGLEKVPKD-L--PPDTALLDLQNNKITE-------------IKDGDFKNLKNLHTLILINNKISKISPGAFAPL   78 (305)
T ss_dssp             EECTTSCCCSCCCS-C--CTTCCEEECCSSCCCC-------------BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             EEecCCCCCccCCC-C--CCCCCEEECcCCcCCC-------------cChhHhhccccccccccccccccccchhhhhCC
Confidence            44455666666653 2  2456666666666652             1111 1111223334455555555655544322


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcce
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQIS  161 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~  161 (405)
                      ..                     ++.+++++|+++.+|......+..|.+.+|.+..++...+.....+..++...|...
T Consensus        79 ~~---------------------L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~  137 (305)
T d1xkua_          79 VK---------------------LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  137 (305)
T ss_dssp             TT---------------------CCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             Cc---------------------cCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccccccccccc
Confidence            11                     278888888888888877778888888888888888877777788888888777544


Q ss_pred             e--ecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCC
Q psy12210        162 K--VAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHI  239 (405)
Q Consensus       162 ~--~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  239 (405)
                      .  .....|.++++|+.+++++|.+..++...   .++|+.|++.+|...                              
T Consensus       138 ~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~------------------------------  184 (305)
T d1xkua_         138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKIT------------------------------  184 (305)
T ss_dssp             GGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCC------------------------------
T ss_pred             ccCCCccccccccccCccccccCCccccCccc---CCccCEEECCCCcCC------------------------------
Confidence            3  33456777888888888888888887543   567888888877633                              


Q ss_pred             CCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCC
Q psy12210        240 KGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPIL  319 (405)
Q Consensus       240 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~  319 (405)
                            ......+...                                             ..+++|++++|.++.++..
T Consensus       185 ------~~~~~~~~~~---------------------------------------------~~l~~L~~s~n~l~~~~~~  213 (305)
T d1xkua_         185 ------KVDAASLKGL---------------------------------------------NNLAKLGLSFNSISAVDNG  213 (305)
T ss_dssp             ------EECTGGGTTC---------------------------------------------TTCCEEECCSSCCCEECTT
T ss_pred             ------CCChhHhhcc---------------------------------------------ccccccccccccccccccc
Confidence                  1112222111                                             1478899999999998765


Q ss_pred             CC---CCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCccccc------CCccCceeecccCCC
Q psy12210        320 LP---EATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFA------NYKRLRRIRLEQNDI  388 (405)
Q Consensus       320 ~~---~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~------~l~~L~~L~L~~N~l  388 (405)
                      .+   ++|++|+++ |+++.++         ..|..+++ ++|+|++|+|+.++...|.      .+++|+.|+|++|.+
T Consensus       214 ~~~~l~~L~~L~L~~N~L~~lp---------~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         214 SLANTPHLRELHLNNNKLVKVP---------GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             TGGGSTTCCEEECCSSCCSSCC---------TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccceeeecccccccccc---------cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            54   689999999 9999998         57899999 9999999999999876664      468999999999997


Q ss_pred             c--ccChhhcCCCccc
Q psy12210        389 T--ELPPKAFANYKRL  402 (405)
Q Consensus       389 ~--~i~~~~f~~l~~L  402 (405)
                      +  .+++.+|.-+...
T Consensus       285 ~~~~~~~~~f~~~~~~  300 (305)
T d1xkua_         285 QYWEIQPSTFRCVYVR  300 (305)
T ss_dssp             CGGGSCGGGGTTCCCG
T ss_pred             ccCcCCHhHhcccccC
Confidence            6  6778888765543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=5.7e-23  Score=173.85  Aligned_cols=162  Identities=34%  Similarity=0.724  Sum_probs=136.1

Q ss_pred             CCCCCccccCceEEcCCCCccccCCCCCCCccEEEccCCCCCC-CCcccc------------------------cCCCCC
Q psy12210         96 SCPHPCRCADGIVDCREKGLNKVPILLPEATTELRLEQNDITE-LPPKAF------------------------ANYKRL  150 (405)
Q Consensus        96 ~~p~~~~c~~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~-l~~~~~------------------------~~l~~L  150 (405)
                      .||..|+|..+.++|++++++++|..+|+++++|+|++|.|+. ++...|                        ..+++|
T Consensus         1 ~CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_           1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CcCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc
Confidence            4999999999999999999999999888777777777777754 433444                        444556


Q ss_pred             cEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCc
Q psy12210        151 RRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLY  230 (405)
Q Consensus       151 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~  230 (405)
                      ++|++++|+++.+++.+|.++++|++|++++|+|+.+++++|..+++|+++++++|++.|+|.+.|+..|+.........
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~  160 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGA  160 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGG
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCC
Confidence            66666667777777788888889999999999999999888999999999999999999999999999999888877788


Q ss_pred             cccCCCCCCCCCcccccCCCcccccCc
Q psy12210        231 TKCFAPSHIKGQNILDIPEHEFKCSGS  257 (405)
Q Consensus       231 ~~~~~~~~l~~~~l~~l~~~~~~~~~~  257 (405)
                      ..|..+..+.+..+.++....+.|...
T Consensus       161 ~~c~~p~~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         161 ARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             eEeCCChhhcCCEeeecCHhhCcCCCC
Confidence            889999999999999999999988643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=180.42  Aligned_cols=187  Identities=20%  Similarity=0.358  Sum_probs=152.5

Q ss_pred             ccccCCCcCccCCchhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCccccC
Q psy12210          2 PRTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCS   81 (405)
Q Consensus         2 ~L~l~~n~i~~l~~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~   81 (405)
                      .|+|++|+|+++++++|.++++|+.|+|++|+|+.             .+.+ ......+.+++++|++...+.......
T Consensus        35 ~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-------------l~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~  100 (266)
T d1p9ag_          35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-------------LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLP  100 (266)
T ss_dssp             EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------EECC-SCCTTCCEEECCSSCCSSCCCCTTTCT
T ss_pred             EEECcCCcCCCcCHHHhhccccccccccccccccc-------------cccc-ccccccccccccccccccccccccccc
Confidence            58888888888888888888889999998888862             2211 112234456667777665543221111


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccCceEEcCCCCccccCCCCC---CCccEEEccCCCCCCCCcccccCCCCCcEEecCCC
Q psy12210         82 GPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLP---EATTELRLEQNDITELPPKAFANYKRLRRIDLSKN  158 (405)
Q Consensus        82 ~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~lp~~~~---~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n  158 (405)
                                            .++.++++++.+.+++....   .+++.|++++|.++.+++..+..+++++.+++++|
T Consensus       101 ----------------------~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_         101 ----------------------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             ----------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ----------------------ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence                                  23899999999998886543   68899999999999999999999999999999999


Q ss_pred             cceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcC
Q psy12210        159 QISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYP  225 (405)
Q Consensus       159 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~  225 (405)
                      +++.++++.|..+++|++|++++|+|+.+++++| .+++|+.|++++|++.|+|++.|+..|+....
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~  224 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             cccccCccccccccccceeecccCCCcccChhHC-CCCCCCEEEecCCCCCCCcchHHHHHHHHhcc
Confidence            9999999999999999999999999999998765 48999999999999999999999999987544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=7.1e-21  Score=178.25  Aligned_cols=89  Identities=19%  Similarity=0.307  Sum_probs=58.5

Q ss_pred             CceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCc
Q psy12210        303 DGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLR  379 (405)
Q Consensus       303 l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~  379 (405)
                      ++.++++.|.++.++. ...+.++.|+++ |++++++          .+..+++ +.|++++|+|+.++  .|+++++|+
T Consensus       287 l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~----------~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~  354 (384)
T d2omza2         287 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS----------PVSSLTKLQRLFFANNKVSDVS--SLANLTNIN  354 (384)
T ss_dssp             CSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG----------GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCC
T ss_pred             cccccccccccccccccchhcccCeEECCCCCCCCCc----------ccccCCCCCEEECCCCCCCCCh--hHcCCCCCC
Confidence            5566666666665542 223567777777 7777665          2566777 77777777777665  366777777


Q ss_pred             eeecccCCCcccChhhcCCCccccCC
Q psy12210        380 RIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       380 ~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      .|++++|+|+++++  +.++++|++|
T Consensus       355 ~L~l~~N~l~~l~~--l~~l~~L~~L  378 (384)
T d2omza2         355 WLSAGHNQISDLTP--LANLTRITQL  378 (384)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             EEECCCCcCCCChh--hccCCCCCEe
Confidence            77777777777764  6666666543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=2.6e-20  Score=174.30  Aligned_cols=184  Identities=19%  Similarity=0.294  Sum_probs=133.3

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      +.+..+++++|.++.+++  +..+++|++|++++|.++.++  .+..+++|+.+++++|.++.+++  +..+++|+.+++
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  270 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL  270 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeec
Confidence            578888899988888775  466778899999999888764  47788889999999998888775  677888999998


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      +++.+.....+.              .........+....+..+..                                  
T Consensus       271 ~~~~l~~~~~~~--------------~~~~l~~l~~~~n~l~~~~~----------------------------------  302 (384)
T d2omza2         271 GANQISNISPLA--------------GLTALTNLELNENQLEDISP----------------------------------  302 (384)
T ss_dssp             CSSCCCCCGGGT--------------TCTTCSEEECCSSCCSCCGG----------------------------------
T ss_pred             cCcccCCCCccc--------------cccccccccccccccccccc----------------------------------
Confidence            888754110000              00000000011111111100                                  


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                            +..       ...++.+++++|+++.++. ..+++|++|+++ |++++++          .++++++ ++|+++
T Consensus       303 ------~~~-------~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~----------~l~~l~~L~~L~l~  359 (384)
T d2omza2         303 ------ISN-------LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS----------SLANLTNINWLSAG  359 (384)
T ss_dssp             ------GGG-------CTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECC
T ss_pred             ------cch-------hcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCCh----------hHcCCCCCCEEECC
Confidence                  000       0158899999999998863 446899999999 9999876          4889999 999999


Q ss_pred             CCCCcccCcccccCCccCceeecccC
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQN  386 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~N  386 (405)
                      +|+|+.+++  +.++++|+.|+|++|
T Consensus       360 ~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999975  889999999999998

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.9e-20  Score=151.01  Aligned_cols=146  Identities=27%  Similarity=0.430  Sum_probs=128.6

Q ss_pred             CCCCccccC-ceEEcCCCCccccCCCCC--CCccEEEccCC-CCCCCCcccccCCCCCcEEecCCCcceeecccccCCCC
Q psy12210         97 CPHPCRCAD-GIVDCREKGLNKVPILLP--EATTELRLEQN-DITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLK  172 (405)
Q Consensus        97 ~p~~~~c~~-~~l~~~~n~l~~lp~~~~--~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~  172 (405)
                      ||..|.|.. ..++|++++++++|..++  ++++.|++.+| .++.+++.+|.++++|+.|++++|+++.+.+.+|.+++
T Consensus         1 CP~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~   80 (156)
T d2ifga3           1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (156)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CcCCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccc
Confidence            899999975 889999999999998886  68999999866 59999999999999999999999999999999999999


Q ss_pred             CCCEEEccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCC--CCccccCCCCCCCCCc
Q psy12210        173 SLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIKGQN  243 (405)
Q Consensus       173 ~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~  243 (405)
                      +|++|++++|+++.++.++|..+ +|+.|++++|++.|+|++.|+..|+......  .....|..+..+.+.+
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             cccceeccCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            99999999999999999988754 7999999999999999999999998765432  2346667776666644

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=1.2e-20  Score=172.08  Aligned_cols=202  Identities=13%  Similarity=0.107  Sum_probs=116.7

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCC-cEEE
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRL-RTLR  202 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L-~~L~  202 (405)
                      ++|++|++++|.+..+++..+..+.+|+.+++++|.+....|..+..++.++.+++++|.+....+..+..+.++ +.++
T Consensus       101 ~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~  180 (313)
T d1ogqa_         101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             cccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccc
Confidence            466666777666666666666666666777776666666666666666667677776666664333344445544 5666


Q ss_pred             eecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCC
Q psy12210        203 ISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPV  282 (405)
Q Consensus       203 l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  282 (405)
                      ++.|.+.....            ...... ......+............                               
T Consensus       181 ~~~n~l~~~~~------------~~~~~l-~~~~l~l~~~~~~~~~~~~-------------------------------  216 (313)
T d1ogqa_         181 ISRNRLTGKIP------------PTFANL-NLAFVDLSRNMLEGDASVL-------------------------------  216 (313)
T ss_dssp             CCSSEEEEECC------------GGGGGC-CCSEEECCSSEEEECCGGG-------------------------------
T ss_pred             ccccccccccc------------cccccc-ccccccccccccccccccc-------------------------------
Confidence            66665441100            000000 0000000000000000000                               


Q ss_pred             CCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC--CCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEE
Q psy12210        283 EKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL--PEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRR  358 (405)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~--~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~  358 (405)
                             ...       ..+++.++++++.+...+..+  .++++.|+++ |++++.-        |.+|+.+++ ++|+
T Consensus       217 -------~~~-------~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~i--------P~~l~~L~~L~~L~  274 (313)
T d1ogqa_         217 -------FGS-------DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL--------PQGLTQLKFLHSLN  274 (313)
T ss_dssp             -------CCT-------TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECC--------CGGGGGCTTCCEEE
T ss_pred             -------ccc-------cccccccccccccccccccccccccccccccCccCeecccC--------ChHHhCCCCCCEEE
Confidence                   000       015778888888877655443  4688888888 8888433        367888888 8888


Q ss_pred             ecCCCCcccCcccccCCccCceeecccCC-CcccC
Q psy12210        359 LEQNDITELPPKAFANYKRLRRIRLEQND-ITELP  392 (405)
Q Consensus       359 L~~N~i~~i~~~~~~~l~~L~~L~L~~N~-l~~i~  392 (405)
                      |++|+|++..|. +.++++|+.+++++|+ +.+.|
T Consensus       275 Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             CcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            888888843333 6778888888888887 55543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.2e-18  Score=147.05  Aligned_cols=198  Identities=19%  Similarity=0.245  Sum_probs=144.4

Q ss_pred             ceEEcCCCCccccCCC-C--CCCccEEEccCCCCCC-CCcccccCCCCCcEEecC-CCcceeecccccCCCCCCCEEEcc
Q psy12210        106 GIVDCREKGLNKVPIL-L--PEATTELRLEQNDITE-LPPKAFANYKRLRRIDLS-KNQISKVAVDAFQGLKSLTSLTLN  180 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~-~--~~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~  180 (405)
                      +++++++|.++.+|.. +  .++|++|++++|.+.. +++..|.++++++++.+. .|.+..+.+..|.++++|+.+++.
T Consensus        32 ~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~  111 (242)
T d1xwdc1          32 IELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS  111 (242)
T ss_dssp             SEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEE
T ss_pred             CEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence            5555555555555543 2  2589999999999875 667789999999999876 478888988999999999999999


Q ss_pred             CCcCcccChhh-hhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccc
Q psy12210        181 NNNLTYLPDGV-FAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSM  259 (405)
Q Consensus       181 ~n~l~~l~~~~-f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~  259 (405)
                      +|.+...+... +..+..+..+...++.                                    +..+....|....   
T Consensus       112 ~~~l~~~~~~~~~~~l~~l~~~~~~n~~------------------------------------l~~i~~~~~~~~~---  152 (242)
T d1xwdc1         112 NTGIKHLPDVHKIHSLQKVLLDIQDNIN------------------------------------IHTIERNSFVGLS---  152 (242)
T ss_dssp             SCCCCSCCCCTTTCBSSCEEEEEESCTT------------------------------------CCEECTTSSTTSB---
T ss_pred             hhhhcccccccccccccccccccccccc------------------------------------ccccccccccccc---
Confidence            99998876522 2233334443333333                                    2333333332110   


Q ss_pred             cccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCC--CceEEE-EE-eccee
Q psy12210        260 ETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPE--ATTELT-YM-VSIDR  335 (405)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~--~l~~L~-l~-n~i~~  335 (405)
                                                               ..+..+++++|+++.++...+.  .+..+. ++ |+++.
T Consensus       153 -----------------------------------------~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~  191 (242)
T d1xwdc1         153 -----------------------------------------FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE  191 (242)
T ss_dssp             -----------------------------------------SSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCC
T ss_pred             -----------------------------------------ccceeeecccccccccccccccchhhhcccccccccccc
Confidence                                                     1477889999999999877764  444554 35 88999


Q ss_pred             eeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccCh
Q psy12210        336 VDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPP  393 (405)
Q Consensus       336 i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~  393 (405)
                      ++        ...|.++++ ++|+|++|+|+.+++..|.++++|+.+++.+  ++.+|+
T Consensus       192 l~--------~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~--l~~lp~  240 (242)
T d1xwdc1         192 LP--------NDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPT  240 (242)
T ss_dssp             CC--------TTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES--SSCSCC
T ss_pred             cc--------HHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC--CCcCCC
Confidence            98        778999999 9999999999999999999999999988754  455553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=1.2e-16  Score=146.98  Aligned_cols=259  Identities=16%  Similarity=0.120  Sum_probs=135.6

Q ss_pred             ceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCc
Q psy12210        106 GIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLT  185 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  185 (405)
                      +.+++++|+++.++. +++.+++|++++|.++.++.  +..+++|+.|+++++.+...+.    ....+..+.+..+...
T Consensus        81 ~~L~l~~n~l~~l~~-lp~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~  153 (353)
T d1jl5a_          81 KSLLVDNNNLKALSD-LPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLE  153 (353)
T ss_dssp             CEEECCSSCCSCCCS-CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred             hhhhhhhcccchhhh-hccccccccccccccccccc--hhhhccceeecccccccccccc----ccccccchhhcccccc
Confidence            777788888877764 56678888888888888774  5677888888888887765542    2345556666555544


Q ss_pred             ccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCC------CCCccccCCCCCCCCCcccccCCCcccccCccc
Q psy12210        186 YLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPR------LGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSM  259 (405)
Q Consensus       186 ~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~  259 (405)
                      ....  +..++.++.+.+..|....................      ............+.+.....++...        
T Consensus       154 ~~~~--l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~--------  223 (353)
T d1jl5a_         154 ELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLP--------  223 (353)
T ss_dssp             SCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCC--------
T ss_pred             cccc--ccccccceeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------
Confidence            4332  45566667777766654421110000000000000      0000000000011111111111000        


Q ss_pred             cccccceecccccCCCCCC----CCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-ecce
Q psy12210        260 ETRSKIYREECSTDFHPYN----SCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSID  334 (405)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~  334 (405)
                      ....  ........+....    ...........+...   ..........++..+.+..++ ..+++|++|+++ |+++
T Consensus       224 ~~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l---~~l~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~  297 (353)
T d1jl5a_         224 PSLE--ALNVRDNYLTDLPELPQSLTFLDVSENIFSGL---SELPPNLYYLNASSNEIRSLC-DLPPSLEELNVSNNKLI  297 (353)
T ss_dssp             TTCC--EEECCSSCCSCCCCCCTTCCEEECCSSCCSEE---SCCCTTCCEEECCSSCCSEEC-CCCTTCCEEECCSSCCS
T ss_pred             cccc--cccccccccccccccccccccccccccccccc---ccccchhcccccccCcccccc-ccCCCCCEEECCCCccC
Confidence            0000  0000000000000    000000000000000   000113445666666776665 346789999999 9999


Q ss_pred             eeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        335 RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       335 ~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      .++         .   .+++ +.|+|++|+|++++..    +++|+.|+|++|+|+++|. ....+.+|+.
T Consensus       298 ~lp---------~---~~~~L~~L~L~~N~L~~l~~~----~~~L~~L~L~~N~L~~lp~-~~~~L~~L~~  351 (353)
T d1jl5a_         298 ELP---------A---LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPD-IPESVEDLRM  351 (353)
T ss_dssp             CCC---------C---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC-CCTTCCEEEC
T ss_pred             ccc---------c---ccCCCCEEECCCCcCCccccc----cCCCCEEECcCCcCCCCCc-cccccCeeEC
Confidence            987         2   3577 9999999999998752    5789999999999999985 3566777653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=9.1e-18  Score=152.65  Aligned_cols=232  Identities=18%  Similarity=0.152  Sum_probs=156.0

Q ss_pred             CceEEcCCCCcc---ccCCCCC--CCccEEEccC-CCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEE
Q psy12210        105 DGIVDCREKGLN---KVPILLP--EATTELRLEQ-NDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLT  178 (405)
Q Consensus       105 ~~~l~~~~n~l~---~lp~~~~--~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~  178 (405)
                      .+.+++++++++   .+|..+.  ++|++|++++ |.+++..|..|+++++|++|++++|.+.++.+..+..+..|+.++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            366788888776   4666553  6888888875 777743334588888888888888888888877788888888888


Q ss_pred             ccCCcCcccChhhhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCcccc-CCCCCCCCCcccccCCCcccccCc
Q psy12210        179 LNNNNLTYLPDGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKC-FAPSHIKGQNILDIPEHEFKCSGS  257 (405)
Q Consensus       179 l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~l~~~~~~~~~~  257 (405)
                      ++.|.+....+..+..+++++.+++++|.+...            .+........ .....+.++.+.......+...  
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~------------ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l--  197 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGA------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--  197 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE------------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC--
T ss_pred             cccccccccCchhhccCcccceeeccccccccc------------ccccccccccccccccccccccccccccccccc--
Confidence            888887766666778888888888888875411            0000000000 0111122222222222221111  


Q ss_pred             cccccccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcCCCCC---CCCceEEEEE-ecc
Q psy12210        258 SMETRSKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPILL---PEATTELTYM-VSI  333 (405)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~~---~~~l~~L~l~-n~i  333 (405)
                                                                  ....++++.+.+....+..   .+.++.++++ +.+
T Consensus       198 --------------------------------------------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l  233 (313)
T d1ogqa_         198 --------------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             --------------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             --------------------------------------------cccccccccccccccccccccccccccccccccccc
Confidence                                                        2456777777666543222   3688899999 888


Q ss_pred             eeeeccchhccccccccCCcc-ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        334 DRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       334 ~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      ...+         ..+..+++ +.|+|++|+++...|..|.++++|+.|+|++|+|++..|. ++++++|++
T Consensus       234 ~~~~---------~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~  295 (313)
T d1ogqa_         234 AFDL---------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV  295 (313)
T ss_dssp             CCBG---------GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCG
T ss_pred             cccc---------cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCH
Confidence            7665         46788889 9999999999965556699999999999999999953333 567777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.1e-17  Score=140.04  Aligned_cols=179  Identities=18%  Similarity=0.284  Sum_probs=135.5

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      .+++.|++.+|.|+.+..  +..+++|++|++++|.++.+.+  +.++++++++++++|.++.++.  +..+++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~~--l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG--GTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc--cccccccccccccccccccccc--cccccccccccc
Confidence            488999999999999853  7899999999999999988764  8899999999999999998864  778999999999


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      +++....                                 +..+..     .                            
T Consensus       115 ~~~~~~~---------------------------------~~~~~~-----~----------------------------  128 (227)
T d1h6ua2         115 TSTQITD---------------------------------VTPLAG-----L----------------------------  128 (227)
T ss_dssp             TTSCCCC---------------------------------CGGGTT-----C----------------------------
T ss_pred             ccccccc---------------------------------cchhcc-----c----------------------------
Confidence            8775330                                 000000     0                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                                       ..+..+.++.+.+...+. ...++++.|+++ |.+..+.          .++++++ +.|+|+
T Consensus       129 -----------------~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~----------~l~~l~~L~~L~Ls  181 (227)
T d1h6ua2         129 -----------------SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT----------PLANLSKLTTLKAD  181 (227)
T ss_dssp             -----------------TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----------GGTTCTTCCEEECC
T ss_pred             -----------------cchhhhhchhhhhchhhhhccccccccccccccccccch----------hhcccccceecccC
Confidence                             035556666666654432 234678888888 8777655          3778888 889999


Q ss_pred             CCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +|+++++++  |+++++|+.|+|++|+++++++  ++++++|++|
T Consensus       182 ~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L  222 (227)
T d1h6ua2         182 DNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV  222 (227)
T ss_dssp             SSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEE
T ss_pred             CCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEE
Confidence            888888764  7788899999999998888875  7777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.6e-16  Score=134.42  Aligned_cols=157  Identities=20%  Similarity=0.386  Sum_probs=112.5

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      .+++.|+++++.|+.+..  +..+++|++|++++|.++.+.+  +.++++|++|++++|.+..++.  ++.+++|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--cccccccccccc
Confidence            467777777777777653  5667777777777777777653  6777777777777777777664  667777777777


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      +++.+.                                                                          
T Consensus       114 ~~~~~~--------------------------------------------------------------------------  119 (199)
T d2omxa2         114 FNNQIT--------------------------------------------------------------------------  119 (199)
T ss_dssp             CSSCCC--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            665532                                                                          


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCC-CCCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVP-ILLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p-~~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                                                     .++ ....+.++.|+++ |++..++          .+..+++ +.|+++
T Consensus       120 -------------------------------~~~~~~~l~~L~~L~l~~n~l~~~~----------~l~~~~~L~~L~l~  158 (199)
T d2omxa2         120 -------------------------------DIDPLKNLTNLNRLELSSNTISDIS----------ALSGLTSLQQLNFS  158 (199)
T ss_dssp             -------------------------------CCGGGTTCTTCSEEECCSSCCCCCG----------GGTTCTTCSEEECC
T ss_pred             -------------------------------cccccchhhhhHHhhhhhhhhcccc----------cccccccccccccc
Confidence                                           111 0112356666666 6666554          4677888 999999


Q ss_pred             CCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +|+++.+++  |+++++|+.|++++|+++++++  ++++++|++|
T Consensus       159 ~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         159 SNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             cccccCCcc--ccCCCCCCEEECCCCCCCCCcc--ccCCCCCCcC
Confidence            999998864  8889999999999999998863  7788888765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=5.5e-16  Score=133.89  Aligned_cols=161  Identities=23%  Similarity=0.335  Sum_probs=125.6

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      ++|+.|++++|.++.+.+  +.++++++.+++++|.++.+.  .+.++++|+.++++++....+..  +...+.++.+.+
T Consensus        63 ~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~--~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~~  136 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL  136 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEEC
T ss_pred             CCCcEeecCCceeecccc--ccccccccccccccccccccc--cccccccccccccccccccccch--hccccchhhhhc
Confidence            578899999999988775  788899999999999888774  47788999999998888877754  566788888888


Q ss_pred             ecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCC
Q psy12210        204 SENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVE  283 (405)
Q Consensus       204 ~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  283 (405)
                      ..+.+.                                    ...  .+...                            
T Consensus       137 ~~~~~~------------------------------------~~~--~~~~~----------------------------  150 (227)
T d1h6ua2         137 DLNQIT------------------------------------NIS--PLAGL----------------------------  150 (227)
T ss_dssp             CSSCCC------------------------------------CCG--GGGGC----------------------------
T ss_pred             hhhhhc------------------------------------hhh--hhccc----------------------------
Confidence            776532                                    000  00000                            


Q ss_pred             CCCCCCCCCCCCCCCccccCceeecCCCCCCcCCC-CCCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEec
Q psy12210        284 KPTGECAAEPSCPHPCRCADGIVDCREKGLNKVPI-LLPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLE  360 (405)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~-~~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~  360 (405)
                                       .+++.+++++|.++..+. ...++++.|+++ |++++++          .++++++ ++|+|+
T Consensus       151 -----------------~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~----------~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         151 -----------------TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS----------PLASLPNLIEVHLK  203 (227)
T ss_dssp             -----------------TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG----------GGGGCTTCCEEECT
T ss_pred             -----------------cccccccccccccccchhhcccccceecccCCCccCCCh----------hhcCCCCCCEEECc
Confidence                             147888888888776543 234789999999 9998887          3789999 999999


Q ss_pred             CCCCcccCcccccCCccCceeeccc
Q psy12210        361 QNDITELPPKAFANYKRLRRIRLEQ  385 (405)
Q Consensus       361 ~N~i~~i~~~~~~~l~~L~~L~L~~  385 (405)
                      +|+|+.+++  ++++++|+.|+|++
T Consensus       204 ~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         204 NNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             TSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCcCCCCcc--cccCCCCCEEEeeC
Confidence            999999975  88999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1e-15  Score=130.52  Aligned_cols=79  Identities=19%  Similarity=0.364  Sum_probs=64.4

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      .+++.|+++++.++.+..  +..+++|++|++++|.++.+++  +..+++|+.|++++|+++.++.  +..+++|+.+++
T Consensus        46 ~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc--cccccccccccc
Confidence            468888888888888774  6778889999999998888763  6788889999998888888764  677888888888


Q ss_pred             ecCcc
Q psy12210        204 SENSF  208 (405)
Q Consensus       204 ~~N~l  208 (405)
                      ++|.+
T Consensus       120 ~~~~~  124 (210)
T d1h6ta2         120 EHNGI  124 (210)
T ss_dssp             TTSCC
T ss_pred             ccccc
Confidence            88763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=2.1e-16  Score=132.86  Aligned_cols=110  Identities=29%  Similarity=0.523  Sum_probs=74.8

Q ss_pred             CCCCccccCceeecCCCCCCcCCCCCCCCceEEEEE-eccee-eec----------------cchhccccccccCCcc-c
Q psy12210        295 CPHPCRCADGIVDCREKGLNKVPILLPEATTELTYM-VSIDR-VDK----------------VLLYSYISNNFKRWTN-R  355 (405)
Q Consensus       295 ~~~~~~~~l~~l~l~~n~l~~~p~~~~~~l~~L~l~-n~i~~-i~~----------------~~~~~~~~~~~~~l~~-~  355 (405)
                      ||.+|.|+.+++++++++++++|..+|+.+++|+++ |+|++ ++.                +.+....+..|..+++ +
T Consensus         2 CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            899999999999999999999999999999999999 99875 430                1111112344555555 5


Q ss_pred             eEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCCCccccC
Q psy12210        356 SRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRR  404 (405)
Q Consensus       356 ~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  404 (405)
                      .|+|++|+|+.+++++|.++++|+.|+|++|+|+++++++|.++++|++
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence            5666666666666555666666666666666666666555555555544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=6.1e-16  Score=131.88  Aligned_cols=175  Identities=24%  Similarity=0.310  Sum_probs=136.0

Q ss_pred             EEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCc
Q psy12210        128 ELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENS  207 (405)
Q Consensus       128 ~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~  207 (405)
                      ...+..+.+++...  ...+.+|+.|++++|.++.+.  .+..+++|++|++++|+++.+++  ++.+++|+.|++++|.
T Consensus        28 ~~~l~~~~~~~~~~--~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          28 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK  101 (210)
T ss_dssp             HHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             HHHhCcCccCCccC--HHHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCcccccccccccc
Confidence            34566677765443  235678999999999999875  37889999999999999999885  6789999999999997


Q ss_pred             cccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCCCCCCCCC
Q psy12210        208 FICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSCPVEKPTG  287 (405)
Q Consensus       208 l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  287 (405)
                      +.                                    +++.  +...                                
T Consensus       102 i~------------------------------------~l~~--l~~l--------------------------------  111 (210)
T d1h6ta2         102 VK------------------------------------DLSS--LKDL--------------------------------  111 (210)
T ss_dssp             CC------------------------------------CGGG--GTTC--------------------------------
T ss_pred             cc------------------------------------cccc--cccc--------------------------------
Confidence            54                                    1110  1000                                


Q ss_pred             CCCCCCCCCCCccccCceeecCCCCCCcCCCC-CCCCceEEEEE-ecceeeeccchhccccccccCCcc-ceEEecCCCC
Q psy12210        288 ECAAEPSCPHPCRCADGIVDCREKGLNKVPIL-LPEATTELTYM-VSIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDI  364 (405)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~l~l~~n~l~~~p~~-~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i  364 (405)
                                   -+++.++++++.+..++.. ..+.++.++++ |.+.+.+          .+..+++ +.+++++|++
T Consensus       112 -------------~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~----------~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         112 -------------KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT----------VLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             -------------TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG----------GGGGCTTCSEEECCSSCC
T ss_pred             -------------ccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccc
Confidence                         0488888988888776532 24688899999 8887755          4677888 9999999999


Q ss_pred             cccCcccccCCccCceeecccCCCcccChhhcCCCccccCC
Q psy12210        365 TELPPKAFANYKRLRRIRLEQNDITELPPKAFANYKRLRRM  405 (405)
Q Consensus       365 ~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  405 (405)
                      +.+++  ++++++|+.|+|++|+|++++.  |+++++|++|
T Consensus       169 ~~i~~--l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L  205 (210)
T d1h6ta2         169 SDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL  205 (210)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred             ccccc--ccCCCCCCEEECCCCCCCCChh--hcCCCCCCEE
Confidence            98864  8889999999999999998863  8888888865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=3.1e-15  Score=126.35  Aligned_cols=80  Identities=30%  Similarity=0.500  Sum_probs=70.5

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEe
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRI  203 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l  203 (405)
                      +++++|++++|.++.+++  +.++++|+.|++++|.+..++  .+.++++|+.|+++++.+..++.  +..+++|+.+++
T Consensus        62 ~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l  135 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL  135 (199)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccccccccccccc--cchhhhhHHhhh
Confidence            589999999999999875  899999999999999998886  38899999999999999888764  778999999999


Q ss_pred             ecCccc
Q psy12210        204 SENSFI  209 (405)
Q Consensus       204 ~~N~l~  209 (405)
                      ++|.+.
T Consensus       136 ~~n~l~  141 (199)
T d2omxa2         136 SSNTIS  141 (199)
T ss_dssp             CSSCCC
T ss_pred             hhhhhc
Confidence            888643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.59  E-value=1.1e-13  Score=126.76  Aligned_cols=94  Identities=24%  Similarity=0.363  Sum_probs=80.3

Q ss_pred             CceEEcCCCCccccCCCCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcC
Q psy12210        105 DGIVDCREKGLNKVPILLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNL  184 (405)
Q Consensus       105 ~~~l~~~~n~l~~lp~~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l  184 (405)
                      .+++++++++++++|. .++++++|++++|.|+.+|..    ..+|+.|++++|.++.+..  +  .+.|++|++++|.+
T Consensus        40 l~~LdLs~~~L~~lp~-~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n~l  110 (353)
T d1jl5a_          40 AHELELNNLGLSSLPE-LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQL  110 (353)
T ss_dssp             CSEEECTTSCCSCCCS-CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCCCCCCC-CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhh--h--cccccccccccccc
Confidence            3899999999999996 456899999999999999752    4689999999999987752  2  25799999999999


Q ss_pred             cccChhhhhcccCCcEEEeecCccc
Q psy12210        185 TYLPDGVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       185 ~~l~~~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ..++.  ++.+++|+.+++.++.+.
T Consensus       111 ~~lp~--~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         111 EKLPE--LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             ccccc--hhhhccceeecccccccc
Confidence            99985  577999999999998765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=1.2e-13  Score=106.65  Aligned_cols=76  Identities=20%  Similarity=0.267  Sum_probs=54.1

Q ss_pred             CCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCcCcccC---hhhhhcccCCc
Q psy12210        124 EATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNNLTYLP---DGVFAELFRLR  199 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~l~---~~~f~~l~~L~  199 (405)
                      +++++|++++|.|+.++.  +.++++|+.|++++|.+..++. ..+..+++|+.|++++|.++.++   ......+|+|+
T Consensus        43 ~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~  120 (124)
T d1dcea3          43 RCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  120 (124)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             hcccccccccccccccCc--cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcc
Confidence            367788888888887753  7778888888888888877653 45677778888888888776443   44555667776


Q ss_pred             EE
Q psy12210        200 TL  201 (405)
Q Consensus       200 ~L  201 (405)
                      .+
T Consensus       121 ~L  122 (124)
T d1dcea3         121 SI  122 (124)
T ss_dssp             EE
T ss_pred             eE
Confidence            65

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.4e-14  Score=113.02  Aligned_cols=97  Identities=22%  Similarity=0.235  Sum_probs=49.2

Q ss_pred             ceEEcCCCCccccCC-CCCCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecc-cccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPI-LLPEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAV-DAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~-~~~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|.+++++. .-.++|+.|++++|.++.++++.+..+++|+.|++++|.+..+.. ..+..+++|++|++++|.
T Consensus        44 ~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          44 DAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             SEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             CEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCc
Confidence            444455555444432 112355555555555555555444555555555555555554432 334555555555555555


Q ss_pred             CcccCh---hhhhcccCCcEEE
Q psy12210        184 LTYLPD---GVFAELFRLRTLR  202 (405)
Q Consensus       184 l~~l~~---~~f~~l~~L~~L~  202 (405)
                      ++..+.   .++..+++|+.||
T Consensus       124 i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         124 VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             GGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccchHHHHHHHCCCcCeeC
Confidence            555442   2344555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=4.1e-13  Score=103.64  Aligned_cols=101  Identities=28%  Similarity=0.322  Sum_probs=90.2

Q ss_pred             ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      |++++++|+++.+|. +  ...+++|++++|.|+.+++ .+..+++|+.|++++|.++.++  .+..+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCCc
Confidence            579999999999884 3  3689999999999999986 5899999999999999999985  48999999999999999


Q ss_pred             CcccCh-hhhhcccCCcEEEeecCcccc
Q psy12210        184 LTYLPD-GVFAELFRLRTLRISENSFIC  210 (405)
Q Consensus       184 l~~l~~-~~f~~l~~L~~L~l~~N~l~~  210 (405)
                      ++.++. ..+..+++|+.+++++|++..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            998874 568889999999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.5e-13  Score=108.54  Aligned_cols=97  Identities=23%  Similarity=0.367  Sum_probs=88.0

Q ss_pred             CCCCcccc-CceeecCCCCCCcCCCCCC--CCceEEEEE-e-cceeeeccchhccccccccCCcc-ceEEecCCCCcccC
Q psy12210        295 CPHPCRCA-DGIVDCREKGLNKVPILLP--EATTELTYM-V-SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELP  368 (405)
Q Consensus       295 ~~~~~~~~-l~~l~l~~n~l~~~p~~~~--~~l~~L~l~-n-~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~  368 (405)
                      ||..|.|. .+.++++++++.++|..++  +++++|+++ | .++.++        +..|.++++ +.|+|++|+|+.|+
T Consensus         1 CP~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~--------~~~f~~l~~L~~L~Ls~N~l~~i~   72 (156)
T d2ifga3           1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE--------LRDLRGLGELRNLTIVKSGLRFVA   72 (156)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC--------GGGSCSCCCCSEEECCSSCCCEEC
T ss_pred             CcCCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC--------chhhccccccCcceeeccccCCcc
Confidence            78888876 5789999999999987775  689999997 5 699999        888999999 99999999999999


Q ss_pred             cccccCCccCceeecccCCCcccChhhcCCC
Q psy12210        369 PKAFANYKRLRRIRLEQNDITELPPKAFANY  399 (405)
Q Consensus       369 ~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~l  399 (405)
                      +.+|..+++|+.|+|++|+|++++.+.|..+
T Consensus        73 ~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (156)
T ss_dssp             TTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             cccccccccccceeccCCCCcccChhhhccc
Confidence            9999999999999999999999999888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.1e-12  Score=104.61  Aligned_cols=103  Identities=27%  Similarity=0.315  Sum_probs=91.2

Q ss_pred             ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|+++.+|...  .++++.|++++|.|+.++.  |..+++|++|++++|.++.+++..+..+++|+.|++++|+
T Consensus        21 r~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          21 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS   98 (162)
T ss_dssp             EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC
T ss_pred             cEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccccccceecccc
Confidence            88999999999998532  3689999999999999863  8899999999999999999988777889999999999999


Q ss_pred             CcccCh-hhhhcccCCcEEEeecCcccc
Q psy12210        184 LTYLPD-GVFAELFRLRTLRISENSFIC  210 (405)
Q Consensus       184 l~~l~~-~~f~~l~~L~~L~l~~N~l~~  210 (405)
                      ++.++. ..+..+++|+.+++++|++..
T Consensus        99 i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          99 LVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccccccccccccchhhcCCCcccc
Confidence            998865 567889999999999999763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.08  E-value=1.5e-12  Score=109.23  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=20.2

Q ss_pred             CccCCchhhccccccceEEccCCccc
Q psy12210         10 LTYLPDGVFAELFRLRTLRISENSFI   35 (405)
Q Consensus        10 i~~l~~~~f~~l~~L~~L~l~~n~~~   35 (405)
                      |+.++ .+|+.+++|++|++++|.|+
T Consensus        37 i~~l~-~sl~~L~~L~~L~Ls~n~I~   61 (198)
T d1m9la_          37 IEKMD-ATLSTLKACKHLALSTNNIE   61 (198)
T ss_dssp             CCCCH-HHHHHTTTCCEEECSEEEES
T ss_pred             hhhhh-hHHhcccccceeECcccCCC
Confidence            44443 46899999999999999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.3e-11  Score=116.79  Aligned_cols=113  Identities=13%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             ccccCCCcCccCC-chhhccccccceEEccCCcccccchhhHHHHHHhhCCCccccccccCCCcccCCcccccCCCcccc
Q psy12210          2 PRTLNNNNLTYLP-DGVFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKC   80 (405)
Q Consensus         2 ~L~l~~n~i~~l~-~~~f~~l~~L~~L~l~~n~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~   80 (405)
                      +||+++|+|+... ...+..++++++|+|++|.++ +.+...+...+...+.       .+.+++++|.+++.....+..
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~-~~~~~~l~~~L~~~~~-------L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPA-------LAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCC-HHHHHHHHHHHHTCTT-------CCEEECTTCCCHHHHHHHHHH
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCC-HHHHHHHHHHHhcCCC-------CCEEECcCCcCChHHHHHHHH
Confidence            6899999998754 334677899999999999875 3444455544444333       244566666665322111100


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccccCceEEcCCCCcccc-----CCCC--CCCccEEEccCCCCCC
Q psy12210         81 SGPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV-----PILL--PEATTELRLEQNDITE  138 (405)
Q Consensus        81 ~~~~~~~~~~~~~~~~~p~~~~c~~~~l~~~~n~l~~l-----p~~~--~~~L~~L~L~~n~i~~  138 (405)
                      . ..               ...+.++.+++++|+++..     +..+  .++|+.|++++|.+..
T Consensus        78 ~-l~---------------~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          78 G-LQ---------------TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             T-TC---------------STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             H-Hh---------------cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            0 00               0012347777777777543     2222  2467777777776653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.99  E-value=1.1e-11  Score=103.75  Aligned_cols=100  Identities=24%  Similarity=0.271  Sum_probs=79.3

Q ss_pred             ceEEcCCCCccccCCCC--CCCccEEEccCCCCCCCCcccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCc
Q psy12210        106 GIVDCREKGLNKVPILL--PEATTELRLEQNDITELPPKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNN  183 (405)
Q Consensus       106 ~~l~~~~n~l~~lp~~~--~~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~  183 (405)
                      +.+++++|++++++. +  .++|+.|++++|.|+.++. .+..+++|+.|++++|.++.+.  .+..+++|+.|++++|+
T Consensus        51 ~~L~Ls~n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~L~~N~  126 (198)
T d1m9la_          51 KHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             CEEECSEEEESCCCC-HHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHHSSEEEESEEE
T ss_pred             ceeECcccCCCCccc-ccCCccccChhhcccccccccc-cccccccccccccccccccccc--cccccccccccccccch
Confidence            667777777777652 2  2689999999999988875 3445568999999999998874  37778899999999999


Q ss_pred             CcccCh-hhhhcccCCcEEEeecCccc
Q psy12210        184 LTYLPD-GVFAELFRLRTLRISENSFI  209 (405)
Q Consensus       184 l~~l~~-~~f~~l~~L~~L~l~~N~l~  209 (405)
                      ++.++. ..+..+++|+.|++++|++.
T Consensus       127 i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         127 ITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             hccccccccccCCCccceeecCCCccc
Confidence            988764 56788999999999999865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.96  E-value=2e-10  Score=104.77  Aligned_cols=189  Identities=15%  Similarity=0.155  Sum_probs=115.6

Q ss_pred             CCccEEEccCCCCCCCCccc----ccCCCCCcEEecCCCcceeeccc-------------ccCCCCCCCEEEccCCcCcc
Q psy12210        124 EATTELRLEQNDITELPPKA----FANYKRLRRIDLSKNQISKVAVD-------------AFQGLKSLTSLTLNNNNLTY  186 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~~~----~~~l~~L~~L~ls~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~  186 (405)
                      ++|+.|++++|.+.......    +...++|+.|++++|.+......             .....+.|+.+.+++|.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            46888888888887654322    34567888888888876432111             11345678888888887764


Q ss_pred             cChh----hhhcccCCcEEEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCcccccc
Q psy12210        187 LPDG----VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETR  262 (405)
Q Consensus       187 l~~~----~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~  262 (405)
                      -...    .+...++|+.+++++|.+.-.    .+..++                           ...+...       
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~----g~~~~l---------------------------~~~l~~~-------  214 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPE----GIEHLL---------------------------LEGLAYC-------  214 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHH----HHHHHH---------------------------HTTGGGC-------
T ss_pred             cccccccchhhhhhhhccccccccccccc----ccccch---------------------------hhhhcch-------
Confidence            4322    244567888888888775410    000000                           0000000       


Q ss_pred             ccceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC-----CC--CCCCCceEEEEE-ecce
Q psy12210        263 SKIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV-----PI--LLPEATTELTYM-VSID  334 (405)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~-----p~--~~~~~l~~L~l~-n~i~  334 (405)
                                                            .+++.|++++|.++..     ..  ...+.+++|+++ |.|.
T Consensus       215 --------------------------------------~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         215 --------------------------------------QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             --------------------------------------TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             --------------------------------------hhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence                                                  1478888888887532     11  123688999999 8887


Q ss_pred             eeeccchhccccccccC--Ccc-ceEEecCCCCcccCccc----c-cCCccCceeecccCCCcccC
Q psy12210        335 RVDKVLLYSYISNNFKR--WTN-RSRRLEQNDITELPPKA----F-ANYKRLRRIRLEQNDITELP  392 (405)
Q Consensus       335 ~i~~~~~~~~~~~~~~~--l~~-~~L~L~~N~i~~i~~~~----~-~~l~~L~~L~L~~N~l~~i~  392 (405)
                      ......+    ...+..  ... ++|++++|+|+......    + .++++|+.|+|++|++....
T Consensus       257 ~~g~~~l----~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         257 ARGAAAV----VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             HHHHHHH----HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             chhhHHH----HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            6441111    123333  245 89999999988643222    2 25789999999999987654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-10  Score=103.06  Aligned_cols=77  Identities=10%  Similarity=0.020  Sum_probs=54.5

Q ss_pred             cCceeecCCC--CCCc--CCC--CCCCCceEEEEE-e-cceeeeccchhccccccccCCcc-ceEEecCC-CCcccCccc
Q psy12210        302 ADGIVDCREK--GLNK--VPI--LLPEATTELTYM-V-SIDRVDKVLLYSYISNNFKRWTN-RSRRLEQN-DITELPPKA  371 (405)
Q Consensus       302 ~l~~l~l~~n--~l~~--~p~--~~~~~l~~L~l~-n-~i~~i~~~~~~~~~~~~~~~l~~-~~L~L~~N-~i~~i~~~~  371 (405)
                      .++.|+++++  .++.  +..  ...++|++|+++ + .+++..        ...+.++++ ++|+|+++ .|+......
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~--------~~~l~~~~~L~~L~L~~C~~i~~~~l~~  220 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC--------FQEFFQLNYLQHLSLSRCYDIIPETLLE  220 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--------GGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchh--------hhhhcccCcCCEEECCCCCCCChHHHHH
Confidence            4778888764  2332  111  113689999998 4 465443        456778888 99999985 788766666


Q ss_pred             ccCCccCceeecccC
Q psy12210        372 FANYKRLRRIRLEQN  386 (405)
Q Consensus       372 ~~~l~~L~~L~L~~N  386 (405)
                      ++++++|+.|+++++
T Consensus       221 L~~~~~L~~L~l~~~  235 (284)
T d2astb2         221 LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             HhcCCCCCEEeeeCC
Confidence            888999999999987

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.3e-10  Score=100.35  Aligned_cols=213  Identities=12%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             CCccEEEccCCCCCCCC-cccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCC-cCcccCh-hhhhcccCCcE
Q psy12210        124 EATTELRLEQNDITELP-PKAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNN-NLTYLPD-GVFAELFRLRT  200 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~-~~f~~l~~L~~  200 (405)
                      ..+++|+++++.++... ...+.++++|++|+++++.+.......+..+++|++|+++++ .++...- ..+..+++|+.
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            47888999888876432 234678889999999988887666667788888999999885 4654322 23456788999


Q ss_pred             EEeecCccccccCchHHHHHHhhcCCCCCccccCCCCCCCCCcccccCCCcccccCccccccccceecccccCCCCCCCC
Q psy12210        201 LRISENSFICDCHLSWLHRWLKRYPRLGLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRSKIYREECSTDFHPYNSC  280 (405)
Q Consensus       201 L~l~~N~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (405)
                      |+++++...-+   ..+........           ..+....+...... +...  .+    ..+.             
T Consensus       126 L~ls~c~~~~~---~~~~~~~~~~~-----------~~L~~L~l~~~~~~-i~~~--~l----~~l~-------------  171 (284)
T d2astb2         126 LNLSWCFDFTE---KHVQVAVAHVS-----------ETITQLNLSGYRKN-LQKS--DL----STLV-------------  171 (284)
T ss_dssp             EECCCCTTCCH---HHHHHHHHHSC-----------TTCCEEECCSCGGG-SCHH--HH----HHHH-------------
T ss_pred             ccccccccccc---ccchhhhcccc-----------cccchhhhcccccc-cccc--cc----cccc-------------
Confidence            99887531100   01111111110           01111111100000 0000  00    0000             


Q ss_pred             CCCCCCCCCCCCCCCCCCccccCceeecCCC-CCCcCC-CCC--CCCceEEEEE--ecceeeeccchhccccccccCCcc
Q psy12210        281 PVEKPTGECAAEPSCPHPCRCADGIVDCREK-GLNKVP-ILL--PEATTELTYM--VSIDRVDKVLLYSYISNNFKRWTN  354 (405)
Q Consensus       281 ~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~l~~~p-~~~--~~~l~~L~l~--n~i~~i~~~~~~~~~~~~~~~l~~  354 (405)
                                  ..|+     +|++|+++++ .++... ..+  .+.|++|+++  +.|++-.        ...++.+++
T Consensus       172 ------------~~~~-----~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~--------l~~L~~~~~  226 (284)
T d2astb2         172 ------------RRCP-----NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET--------LLELGEIPT  226 (284)
T ss_dssp             ------------HHCT-----TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG--------GGGGGGCTT
T ss_pred             ------------cccc-----cccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH--------HHHHhcCCC
Confidence                        0011     6999999986 465321 122  3789999998  4565443        345778899


Q ss_pred             -ceEEecCCCCcccCcccccCCccCceeecccCCCcccChhhcCC
Q psy12210        355 -RSRRLEQNDITELPPKAFANYKRLRRIRLEQNDITELPPKAFAN  398 (405)
Q Consensus       355 -~~L~L~~N~i~~i~~~~~~~l~~L~~L~L~~N~l~~i~~~~f~~  398 (405)
                       +.|+++++ ++.-....+.  ..+..|.+..+.++.+....+++
T Consensus       227 L~~L~l~~~-~~d~~l~~l~--~~lp~L~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         227 LKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN  268 (284)
T ss_dssp             CCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred             CCEEeeeCC-CCHHHHHHHH--HhCccccccCccCCCCCCCccCc
Confidence             99999987 4332222221  23444556777788876544544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.47  E-value=2.4e-08  Score=90.59  Aligned_cols=222  Identities=15%  Similarity=0.137  Sum_probs=127.3

Q ss_pred             CCccEEEccCCCCCCCCc----ccccCCCCCcEEecCCCcceeec----------ccccCCCCCCCEEEccCCcCcccCh
Q psy12210        124 EATTELRLEQNDITELPP----KAFANYKRLRRIDLSKNQISKVA----------VDAFQGLKSLTSLTLNNNNLTYLPD  189 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~----------~~~~~~l~~L~~L~l~~n~l~~l~~  189 (405)
                      ..++.|+|++|.|.....    ..+...++|+.++++++......          ...+..+++|+.|++++|.+.....
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            578899999988765332    23567788999999877544321          1345667889999999998876543


Q ss_pred             h----hhhcccCCcEEEeecCccccccCchHHHHHHhhcCCC--CCccccCCCCCCCCCcccccCCCcccccCccccccc
Q psy12210        190 G----VFAELFRLRTLRISENSFICDCHLSWLHRWLKRYPRL--GLYTKCFAPSHIKGQNILDIPEHEFKCSGSSMETRS  263 (405)
Q Consensus       190 ~----~f~~l~~L~~L~l~~N~l~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~~~~~  263 (405)
                      .    .+...++|+.|++++|.+.... ...+...+......  ...........+.++.+..-....+..         
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~---------  180 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQA-GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK---------  180 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHH-HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH---------
T ss_pred             cchhhhhcccccchheecccccccccc-cccccccccccccccccccCcccceeecccccccccccccccc---------
Confidence            3    3345688999999998765211 11111111000000  000000001111111111100000000         


Q ss_pred             cceecccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCceeecCCCCCCcC------CCC--CCCCceEEEEE-ecce
Q psy12210        264 KIYREECSTDFHPYNSCPVEKPTGECAAEPSCPHPCRCADGIVDCREKGLNKV------PIL--LPEATTELTYM-VSID  334 (405)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~l~~~------p~~--~~~~l~~L~l~-n~i~  334 (405)
                       .+.                               ....++.+++++|.++..      ...  ..+.++.|+++ |.+.
T Consensus       181 -~l~-------------------------------~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         181 -TFQ-------------------------------SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             -HHH-------------------------------HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             -hhh-------------------------------hhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence             000                               001588999999988741      111  23689999999 9876


Q ss_pred             eeeccchhccccccccCCcc-ceEEecCCCCcccCcccc----c--CCccCceeecccCCCccc
Q psy12210        335 RVDKVLLYSYISNNFKRWTN-RSRRLEQNDITELPPKAF----A--NYKRLRRIRLEQNDITEL  391 (405)
Q Consensus       335 ~i~~~~~~~~~~~~~~~l~~-~~L~L~~N~i~~i~~~~~----~--~l~~L~~L~L~~N~l~~i  391 (405)
                      ......+    ...+...++ ++|+|++|.|+......+    .  ..+.|+.|++++|+|+.-
T Consensus       229 ~~g~~~L----~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         229 HLGSSAL----AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             HHHHHHH----HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             ccccccc----cccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChH
Confidence            5321111    245678888 999999999987644333    2  236899999999998753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5e-07  Score=72.15  Aligned_cols=79  Identities=19%  Similarity=0.141  Sum_probs=50.7

Q ss_pred             CCccEEEccCCCCCCCCc--ccccCCCCCcEEecCCCcceeecccccCCCCCCCEEEccCCcCcccCh-------hhhhc
Q psy12210        124 EATTELRLEQNDITELPP--KAFANYKRLRRIDLSKNQISKVAVDAFQGLKSLTSLTLNNNNLTYLPD-------GVFAE  194 (405)
Q Consensus       124 ~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------~~f~~  194 (405)
                      +.+++|++++|+|+.+.+  ..+..+++|+.|++++|.++.+.+-.+.....|+.+++++|.+.....       .++..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            367777777777777653  235567777777777777777665344444567777777777765432       23455


Q ss_pred             ccCCcEEE
Q psy12210        195 LFRLRTLR  202 (405)
Q Consensus       195 l~~L~~L~  202 (405)
                      +|+|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            67777664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=5.8e-06  Score=76.83  Aligned_cols=87  Identities=11%  Similarity=0.114  Sum_probs=55.3

Q ss_pred             ccCceeecCCCCCCcCCCC-------CCCCceEEEEE-ecceeeeccchhccccccc-cCCcc-ceEEecCCCCcccCcc
Q psy12210        301 CADGIVDCREKGLNKVPIL-------LPEATTELTYM-VSIDRVDKVLLYSYISNNF-KRWTN-RSRRLEQNDITELPPK  370 (405)
Q Consensus       301 ~~l~~l~l~~n~l~~~p~~-------~~~~l~~L~l~-n~i~~i~~~~~~~~~~~~~-~~l~~-~~L~L~~N~i~~i~~~  370 (405)
                      +.++.++++++.++.....       ..+.|++|+++ |.|....   ...+ ...+ ...+. ++|+|++|.|+.....
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g---~~~l-~~~l~~~~~~L~~L~Ls~n~i~~~~~~  387 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG---VREL-CQGLGQPGSVLRVLWLADCDVSDSSCS  387 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH---HHHH-HHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc---cchh-hhhhhcccCCCCEEECCCCCCChHHHH
Confidence            4677888887777643211       12478888888 8876432   1111 1222 23556 8899999998764322


Q ss_pred             ----cccCCccCceeecccCCCccc
Q psy12210        371 ----AFANYKRLRRIRLEQNDITEL  391 (405)
Q Consensus       371 ----~~~~l~~L~~L~L~~N~l~~i  391 (405)
                          .+..+++|++|+|++|+|+..
T Consensus       388 ~l~~~l~~~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         388 SLAATLLANHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCHH
Confidence                345578899999999988763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.3e-06  Score=67.17  Aligned_cols=68  Identities=22%  Similarity=0.198  Sum_probs=57.7

Q ss_pred             cccCCCCCcEEecCCCcceeecc--cccCCCCCCCEEEccCCcCcccChhhhhcccCCcEEEeecCcccc
Q psy12210        143 AFANYKRLRRIDLSKNQISKVAV--DAFQGLKSLTSLTLNNNNLTYLPDGVFAELFRLRTLRISENSFIC  210 (405)
Q Consensus       143 ~~~~l~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~l~~~~f~~l~~L~~L~l~~N~l~~  210 (405)
                      .+.++++|++|++++|+++.+.+  ..+..+++|+.|++++|.|+++++-.+....+|+.+++.+|++..
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            45678999999999999998753  456778999999999999999987666666789999999999763

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.10  E-value=0.0008  Score=53.03  Aligned_cols=83  Identities=16%  Similarity=0.161  Sum_probs=58.4

Q ss_pred             CccEEEccCCCCCCCCc----ccccCCCCCcEEecCCCcceeec----ccccCCCCCCCEEEccCCcCcccCh-------
Q psy12210        125 ATTELRLEQNDITELPP----KAFANYKRLRRIDLSKNQISKVA----VDAFQGLKSLTSLTLNNNNLTYLPD-------  189 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~l~~-------  189 (405)
                      .++.|++++|.+..-..    ..+...+.|++|++++|.++...    ..++...++|++|++++|.+..+..       
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~  124 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  124 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence            57788888887764222    23455678999999999887532    2356777889999999888776653       


Q ss_pred             hhhhcccCCcEEEeecCc
Q psy12210        190 GVFAELFRLRTLRISENS  207 (405)
Q Consensus       190 ~~f~~l~~L~~L~l~~N~  207 (405)
                      .++...++|+.|+++.+.
T Consensus       125 ~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         125 MAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCCccEeeCcCCC
Confidence            233445789999887765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.90  E-value=0.0056  Score=47.81  Aligned_cols=84  Identities=14%  Similarity=0.119  Sum_probs=55.7

Q ss_pred             CccEEEccCCCCCCCCcc----cccCCCCCcEEecCCCcceeec----ccccCCCCCCCEEEc--cCCcCcccC----hh
Q psy12210        125 ATTELRLEQNDITELPPK----AFANYKRLRRIDLSKNQISKVA----VDAFQGLKSLTSLTL--NNNNLTYLP----DG  190 (405)
Q Consensus       125 ~L~~L~L~~n~i~~l~~~----~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~l--~~n~l~~l~----~~  190 (405)
                      +++.|++++|.++.....    .+...+.++.+++++|.+....    ...+...++|+.+++  ..|.+..-.    ..
T Consensus        47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~  126 (166)
T d1io0a_          47 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN  126 (166)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred             ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHH
Confidence            677888888877653332    3455678888888888876432    145666788887665  455665422    23


Q ss_pred             hhhcccCCcEEEeecCcc
Q psy12210        191 VFAELFRLRTLRISENSF  208 (405)
Q Consensus       191 ~f~~l~~L~~L~l~~N~l  208 (405)
                      .+...+.|+.|+++.+..
T Consensus       127 ~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         127 MLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHCSSCCEEECCCSSH
T ss_pred             HHHhCCCcCEEeCcCCCC
Confidence            345678899999887764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.68  E-value=0.0077  Score=47.08  Aligned_cols=86  Identities=15%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CCccEEEccCC-CCCCCC----cccccCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccChh----
Q psy12210        124 EATTELRLEQN-DITELP----PKAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPDG----  190 (405)
Q Consensus       124 ~~L~~L~L~~n-~i~~l~----~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~~----  190 (405)
                      +.++.|+|+++ .++.-.    ...+...+.|++|++++|.+.....    ..+...+.|++|++++|.++.-...    
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            57999999874 465321    1246677899999999999875332    3455578899999999998864432    


Q ss_pred             hhhcccCCcEEEeecCccc
Q psy12210        191 VFAELFRLRTLRISENSFI  209 (405)
Q Consensus       191 ~f~~l~~L~~L~l~~N~l~  209 (405)
                      ++...++|+.|++++|.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSC
T ss_pred             HHHhCCcCCEEECCCCcCC
Confidence            3445577999999988643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.03  E-value=0.071  Score=41.09  Aligned_cols=82  Identities=15%  Similarity=0.163  Sum_probs=55.9

Q ss_pred             CCccEEEccC-CCCCCCCc----ccccCCCCCcEEecCCCcceeecc----cccCCCCCCCEEEccCCcCcccCh----h
Q psy12210        124 EATTELRLEQ-NDITELPP----KAFANYKRLRRIDLSKNQISKVAV----DAFQGLKSLTSLTLNNNNLTYLPD----G  190 (405)
Q Consensus       124 ~~L~~L~L~~-n~i~~l~~----~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~l~~----~  190 (405)
                      +.++.|++.+ +.++.-..    ..+...++|++|++++|.++....    ..+...+.++.+++++|.+..-..    .
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4788999986 44654222    235678899999999998765322    345567889999999988764332    3


Q ss_pred             hhhcccCCcEEEeec
Q psy12210        191 VFAELFRLRTLRISE  205 (405)
Q Consensus       191 ~f~~l~~L~~L~l~~  205 (405)
                      .+...++|+.+++..
T Consensus        97 ~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          97 ALQSNTSLIELRIDN  111 (166)
T ss_dssp             GGGGCSSCCEEECCC
T ss_pred             HHHhCccccEEeecc
Confidence            445667888766653