Psyllid ID: psy12291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400----
Protein Sequence
WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWASMVKLTA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEcccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHHHHHHHcccccccccEEcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHccccccccEEEEcccccccccHHcccccccEEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHHcccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccEEccHHHHHHHHHHHHccccccccccEcccHHHHcccEEccccHHHcccccccccccccc
Coil and Loop (DISEMBL)
wiksdkedswyrccegpcrcrpeihtlsCWKQdmeelpfdqiipvdIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHlselpgklfISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSnrinqlppgifddlkyLDFLSLRNNrlsfirpglfnyFKHLTFLELSENWisslngdefsqltslkelhlgqnyietipagsfaNLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNllryldtkafepmLHLKKLQLDSNKLQYLATdslsllpnlitlklaknpwhcdCAILYMARWLRANRrkvwdskptcrgpgnlggksvedmsfddlceGQWASMVKLTA
Flexible Loop (DISEMBL)
wiksdkedswyrccegpcrcrpeIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRrkvwdskptcrgpgnlggksvEDMSFDDLCEGQWASMVKLTA
Low Complexity Region (SEG)
WIKSDKEDSWYrccegpcrcrpeIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHagtfagltnltalflnnnllRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWASMVKLTA
Disordered region (IsUnstruct)
********SWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC***************FDDLCEGQW********
Disordered Region (DISOPRED)
WI*S****SWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWASMVK***
Disordered Region (DISEMBL)
*********WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWASMVKLTA
Disordered Region (DISPRO)
****DKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWA*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWASMVKLTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	404	2.2.26 [Sep-21-2011]
Q8R5M3	578	Leucine-rich repeat-conta	yes	N/A	0.814	0.569	0.351	5e-44
Q80X72	579	Leucine-rich repeat-conta	yes	N/A	0.910	0.635	0.332	4e-43
Q8TF66	581	Leucine-rich repeat-conta	yes	N/A	0.789	0.549	0.353	4e-43
Q9DBB9	547	Carboxypeptidase N subuni	no	N/A	0.787	0.581	0.345	3e-42
P22792	545	Carboxypeptidase N subuni	no	N/A	0.841	0.623	0.342	5e-41
O08742	567	Platelet glycoprotein V O	no	N/A	0.853	0.608	0.311	4e-39
O08770	567	Platelet glycoprotein V O	no	N/A	0.858	0.611	0.311	6e-39
P40197	560	Platelet glycoprotein V O	no	N/A	0.806	0.582	0.308	9e-39
Q7Z2Q7	622	Leucine-rich repeat-conta	no	N/A	0.888	0.577	0.301	5e-35
O43300	516	Leucine-rich repeat trans	no	N/A	0.710	0.556	0.339	2e-33

>sp|Q8R5M3|LRC15_RAT Leucine-rich repeat-containing protein 15 OS=Rattus norvegicus GN=Lrrc15 PE=2 SV=1

 Score =  178 bits (452), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 116/330 (35%), Positives = 173/330 (52%), Gaps = 1/330 (0%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
           NQL  +    F+    L EL+L  N+L  +P + F   + L+ ++L +N    L    F+
Sbjct: 135 NQLVQIQPAQFSQFSNLRELQLHGNNLESIPEEAFDHLVGLTKLNLGRNSFTHLSPRLFQ 194

Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
               L V++L  N +  +P   F  L +L+EL L +N + ++  G F    +L+RL L +
Sbjct: 195 HLGNLQVLRLHENRLSDIPMGTFDALGNLQELALQENQIGTLSPGLFHNNRNLQRLYLSN 254

Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
           N I+QLPPGIF  L  L+ L+L  N L  + PG+F    +L  L L  N I+SL  + FS
Sbjct: 255 NHISQLPPGIFMQLPQLNKLTLFGNSLRELSPGVFGPMPNLRELWLYNNHITSLADNTFS 314

Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
            L  L+ L L  N +  I  G+F  L +L +L L++N +Q+L +  F  L NL  + L +
Sbjct: 315 HLNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQDLDSNVFRSLANLQNISLQS 374

Query: 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM 354
           N LR L    F  +  L  +QL +N L+ L       L NL  L+L  NPW CD  IL +
Sbjct: 375 NRLRQLPGSIFANVNGLTTIQLQNNNLENLPLGIFDHLVNLCELRLYDNPWRCDSDILPL 434

Query: 355 ARWLRANRRKVW-DSKPTCRGPGNLGGKSV 383
             WL  NR ++  D+ P C  P N+ G+S+
Sbjct: 435 HNWLLLNRARLGTDTLPVCSSPANVRGQSL 464

Rattus norvegicus (taxid: 10116)

>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15 PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/370 (33%), Positives = 185/370 (50%), Gaps = 2/370 (0%)

Query: 16  GPCRCRPEIHTLSCWKQDMEELPFDQIIPVD-IRVIDLGINQLSTLSKDAFTGLYKLTEL 74
           G  R    +  LS     ++ LP      V+ +  + L  NQL  +    F+    L EL
Sbjct: 95  GAFRNLGSLRHLSLANNKLKNLPVRLFQDVNNLETLLLSNNQLVQIQPAQFSQFSNLKEL 154

Query: 75  KLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA 134
           +L  N+L  +P  +F   + L+ ++L  N    L    F+    L V++L  N +  +P 
Sbjct: 155 QLYGNNLEYIPEGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRLSDIPM 214

Query: 135 NVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194
             F  L +L+EL L +N + ++  G F    +L+RL L +N I+ LPPGIF  L +L+ L
Sbjct: 215 GTFDALGNLQELALQENQIGTLSPGLFHNNRNLQRLYLSNNHISHLPPGIFMQLPHLNKL 274

Query: 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
           +L  N L  + PG+F    +L  L L  N I+SL  + FS L  L+ L L  N +  I  
Sbjct: 275 TLFGNSLKELSPGVFGPMPNLRELWLYNNHITSLPDNAFSHLNQLQVLILSHNQLSYISP 334

Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKL 314
           G+F  L +L +L L++N +Q+L    F  L NL  + L NN LR L    F  +  L  +
Sbjct: 335 GAFNGLTNLRELSLHTNALQDLDGNVFRSLANLRNVSLQNNRLRQLPGSIFANVNGLMTI 394

Query: 315 QLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW-DSKPTCR 373
           QL +N L+ L       L NL  L+L  NPW CD  IL +  WL  NR ++  D+ P C 
Sbjct: 395 QLQNNNLENLPLGIFDHLGNLCELRLYDNPWRCDSNILPLHDWLILNRARLGTDTLPVCS 454

Query: 374 GPGNLGGKSV 383
            P ++ G+S+
Sbjct: 455 SPASVRGQSL 464

Mus musculus (taxid: 10090)

>sp|Q8TF66|LRC15_HUMAN Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=1 SV=2

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 113/320 (35%), Positives = 169/320 (52%), Gaps = 1/320 (0%)

Query: 65  FTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
           F+    L EL+L  NHL  +P   F   + L+ ++L +N +  +    F+    L V++L
Sbjct: 145 FSQCSNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRL 204

Query: 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
             N +  +P   F  L++L+EL L QN +  +  G F   ++L+RL L +N I+QLPP +
Sbjct: 205 YENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSV 264

Query: 185 FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL 244
           F  L  L+ L+L  N L  + PG+F    +L  L L +N ISSL  + FS L  L+ L L
Sbjct: 265 FMQLPQLNRLTLFGNSLKELSPGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLIL 324

Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKA 304
            +N I  I  G+F  L  L +L L++N +Q+L    F  L NL  + L NN LR L    
Sbjct: 325 SRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNI 384

Query: 305 FEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRK 364
           F  +  L  +QL +N+L+ L       L  L  L+L  NPW CD  IL +  WL  N+ +
Sbjct: 385 FANVNGLMAIQLQNNQLENLPLGIFDHLGKLCELRLYDNPWRCDSDILPLRNWLLLNQPR 444

Query: 365 VW-DSKPTCRGPGNLGGKSV 383
           +  D+ P C  P N+ G+S+
Sbjct: 445 LGTDTVPVCFSPANVRGQSL 464

Homo sapiens (taxid: 9606)

>sp|Q9DBB9|CPN2_MOUSE Carboxypeptidase N subunit 2 OS=Mus musculus GN=Cpn2 PE=1 SV=2

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/342 (34%), Positives = 171/342 (50%), Gaps = 24/342 (7%)

Query: 50  IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
           + L  ++L+ L +D F  +  L  L+L+ N L  LPG+LF S  +L T++L+QNL+  LP
Sbjct: 126 LTLDFDRLAGLPEDLFCHMDILESLQLQGNQLRTLPGRLFQSLRDLRTLNLAQNLLTQLP 185

Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
              F+    L +++LS N +  LP      L SL+EL L  N +T +    FS ++SL+ 
Sbjct: 186 KGAFQSLTGLQMLKLSNNMLARLPEGALGSLSSLQELFLDGNAITELSPHLFSQLFSLEM 245

Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           L LQ N I  LP  +F  L  L FLSL++N L  +  GLF + + L  L LS N + ++ 
Sbjct: 246 LWLQHNAICHLPVSLFSSLHNLTFLSLKDNALRTLPEGLFAHNQGLLHLSLSYNQLETIP 305

Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA 289
              F+ L+ L  L L  N I  +P   F NL+ L KL L SNN+  LH   F  L+ L  
Sbjct: 306 EGAFTNLSRLVSLTLSHNAITDLPEHVFRNLEQLVKLSLDSNNLTALHPALFHNLSRLQL 365

Query: 290 LFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC 349
           L L+ N L  L    F           D+N              +L  L L  NPW CDC
Sbjct: 366 LNLSRNQLTTLPGGIF-----------DTNY-------------DLFNLALLGNPWQCDC 401

Query: 350 AILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
            + Y+  WLR    ++ ++   C GP  L G+ V ++  + L
Sbjct: 402 HLSYLTSWLRLYNNQISNTHTFCAGPAYLKGQLVPNLKQEQL 443

The 83 kDa subunit binds and stabilizes the catalytic subunit at 37 degrees Celsius and keeps it in circulation. Under some circumstances it may be an allosteric modifier of the catalytic subunit.

Mus musculus (taxid: 10090)

>sp|P22792|CPN2_HUMAN Carboxypeptidase N subunit 2 OS=Homo sapiens GN=CPN2 PE=1 SV=3

 Score =  169 bits (427), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 169/342 (49%), Gaps = 2/342 (0%)

Query: 48  RVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
           R+ DL +   S   LS + F+ L  L +L L  N L  LP  LF     L ++ L  N +
Sbjct: 98  RLEDLEVTGSSFLNLSTNIFSNLTSLGKLTLNFNMLEALPEGLFQHLAALESLHLQGNQL 157

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
           + LP   F+    L  + L+ N +  LP  +FH L SL+ L LS N L+ +  G F  + 
Sbjct: 158 QALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQGVFGKLG 217

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
           SL+ L L SN I++LPP +F  L  L+ L L+ N ++ +   +F    +LTFL L  N +
Sbjct: 218 SLQELFLDSNNISELPPQVFSQLFCLERLWLQRNAITHLPLSIFASLGNLTFLSLQWNML 277

Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
             L    F+    L  L L  N +ET+  G+FA+L +L  L L  N I  L AG F  L 
Sbjct: 278 RVLPAGLFAHTPCLVGLSLTHNQLETVAEGTFAHLSNLRSLMLSYNAITHLPAGIFRDLE 337

Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
            L  L+L +N L  L    F+ +  L+ L L  N+L  L         NL  L L  NPW
Sbjct: 338 ELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLALHGNPW 397

Query: 346 HCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMS 387
            CDC + Y+  WL+    ++ + +  C GP  L G+ V  ++
Sbjct: 398 QCDCHLAYLFNWLQQYTDRLLNIQTYCAGPAYLKGQVVPALN 439

The 83 kDa subunit binds and stabilizes the catalytic subunit at 37 degrees Celsius and keeps it in circulation. Under some circumstances it may be an allosteric modifier of the catalytic subunit.

Homo sapiens (taxid: 9606)

>sp|O08742|GPV_MOUSE Platelet glycoprotein V OS=Mus musculus GN=Gp5 PE=2 SV=1

 Score =  162 bits (410), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/376 (31%), Positives = 176/376 (46%), Gaps = 31/376 (8%)

Query: 45  VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
           V ++ + L  N++S L +     +  L +L L  N L +L   LF    NL  + L+QN 
Sbjct: 98  VKLKTLRLTRNKISRLPRAILDKMVLLEQLFLDHNALRDLDQNLFQQLRNLQELGLNQNQ 157

Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
           +  LP+  F     L ++ LS N +  LP  +    + LE+L L  N LTS+  G  S +
Sbjct: 158 LSFLPANLFSSLRELKLLDLSRNNLTHLPKGLLGAQVKLEKLLLYSNQLTSVDSGLLSNL 217

Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
            +L  L+L+ N +  + PG FD L  L  L+L  N L  + P LF +   ++ L L EN 
Sbjct: 218 GALTELRLERNHLRSVAPGAFDRLGNLSSLTLSGNLLESLPPALFLHVSSVSRLTLFENP 277

Query: 225 ISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN-NIQELHAGTFAG 283
           +  L    F ++  L+EL L   ++ T+PA +F NL  L+ L L  N  +  L  G F G
Sbjct: 278 LEELPDVLFGEMAGLRELWLNGTHLSTLPAAAFRNLSGLQTLGLTRNPRLSALPRGVFQG 337

Query: 284 LTNLTALFLNNNLLRYLDTKAFEPMLHLKKL------------------------QLDSN 319
           L  L  L L+ N L  L   A   + HL+++                        QL+ N
Sbjct: 338 LRELRVLGLHTNALAELRDDALRGLGHLRQVSLRHNRLRALPRTLFRNLSSLESVQLEHN 397

Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW-DSKPTCRGPGNL 378
           +L+ L  D  + LP L  + L  NPW CDC +    +WLR +   +  D  P CRGP   
Sbjct: 398 QLETLPGDVFAALPQLTQVLLGHNPWLCDCGLWRFLQWLRHHPDILGRDEPPQCRGP--- 454

Query: 379 GGKSVEDMSFDDLCEG 394
             +    +SF +L +G
Sbjct: 455 --EPRASLSFWELLQG 468

The GPIb-V-IX complex functions as the vWF receptor and mediates vWF-dependent platelet adhesion to blood vessels. The adhesion of platelets to injured vascular surfaces in the arterial circulation is a critical initiating event in hemostasis.

Mus musculus (taxid: 10090)

>sp|O08770|GPV_RAT Platelet glycoprotein V OS=Rattus norvegicus GN=Gp5 PE=3 SV=1

 Score =  162 bits (409), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 179/379 (47%), Gaps = 32/379 (8%)

Query: 45  VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
           V ++ + L  N++S L +     +  L +L L  N L +L   LF   +NL  + L+QN 
Sbjct: 98  VKLKTLRLTRNKISHLPRAILDKMVLLEQLFLDHNALRDLDQNLFQKLLNLRDLCLNQNQ 157

Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
           +  LP+  F    +L V+ LS N +  LP  +    I LE+L L  N L S+  G  + +
Sbjct: 158 LSFLPANLFSSLGKLKVLDLSRNNLTHLPQGLLGAQIKLEKLLLYSNRLMSLDSGLLANL 217

Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
            +L  L+L+ N +  + PG FD L  L  L+L  N L  + P LF +   LT L L EN 
Sbjct: 218 GALTELRLERNHLRSIAPGAFDSLGNLSTLTLSGNLLESLPPALFLHVSWLTRLTLFENP 277

Query: 225 ISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL---------------- 268
           +  L    F ++  L+EL L   ++ T+PA +F NL  L+ L L                
Sbjct: 278 LEELPEVLFGEMAGLRELWLNGTHLRTLPAAAFRNLSGLQTLGLTRNPLLSALPPGMFHG 337

Query: 269 ---------YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSN 319
                    ++N ++EL      GL  L  + L +N LR L    F  +  L  +QL+ N
Sbjct: 338 LTELRVLAVHTNALEELPEDALRGLGRLRQVSLRHNRLRALPRTLFRNLSSLVTVQLEHN 397

Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW-DSKPTCRGPGNL 378
           +L+ L  D  + LP L  + L  NPW CDC +    +WLR +   +  D  P C GP   
Sbjct: 398 QLKTLPGDVFAALPQLTRVLLGHNPWLCDCGLWPFLQWLRHHLELLGRDEPPQCNGP--- 454

Query: 379 GGKSVEDMSFDDLCEG-QW 396
             +S   ++F +L +G QW
Sbjct: 455 --ESRASLTFWELLQGDQW 471

The GPIb-V-IX complex functions as the vWF receptor and mediates vWF-dependent platelet adhesion to blood vessels. The adhesion of platelets to injured vascular surfaces in the arterial circulation is a critical initiating event in hemostasis.

Rattus norvegicus (taxid: 10116)

>sp|P40197|GPV_HUMAN Platelet glycoprotein V OS=Homo sapiens GN=GP5 PE=1 SV=1

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 171/376 (45%), Gaps = 50/376 (13%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
           + +S ++   F+ L KL  L+L +N ++ LPG L    + L  + L  N ++ +    F+
Sbjct: 84  SHISAVAPGTFSDLIKLKTLRLSRNKITHLPGALLDKMVLLEQLFLDHNALRGIDQNMFQ 143

Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
             + L  + L+ N ++ LPA++F +L +L+ LDLS N LT +  G       L+RL L S
Sbjct: 144 KLVNLQELALNQNQLDFLPASLFTNLENLKLLDLSGNNLTHLPKGLLGAQAKLERLLLHS 203

Query: 175 NR------------------------INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN 210
           NR                        I  + PG FD L  L  L+L  N L+F+   LF 
Sbjct: 204 NRLVSLDSGLLNSLGALTELQFHRNHIRSIAPGAFDRLPNLSSLTLSRNHLAFLPSALFL 263

Query: 211 YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA---------------- 254
           +  +LT L L EN ++ L G  F ++  L+EL L +  + T+PA                
Sbjct: 264 HSHNLTLLTLFENPLAELPGVLFGEMGGLQELWLNRTQLRTLPAAAFRNLSRLRYLGVTL 323

Query: 255 ---------GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAF 305
                    G+F  L  L+ L L+SN +  L  G   GL  L  + L  N LR L    F
Sbjct: 324 SPRLSALPQGAFQGLGELQVLALHSNGLTALPDGLLRGLGKLRQVSLRRNRLRALPRALF 383

Query: 306 EPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKV 365
             +  L+ +QLD N+L+ L  D    LP L  + L  N W CDC +     WLR +   V
Sbjct: 384 RNLSSLESVQLDHNQLETLPGDVFGALPRLTEVLLGHNSWRCDCGLGPFLGWLRQHLGLV 443

Query: 366 -WDSKPTCRGPGNLGG 380
             +  P C GPG   G
Sbjct: 444 GGEEPPRCAGPGAHAG 459

The GPIb-V-IX complex functions as the vWF receptor and mediates vWF-dependent platelet adhesion to blood vessels. The adhesion of platelets to injured vascular surfaces in the arterial circulation is a critical initiating event in hemostasis.

Homo sapiens (taxid: 9606)

>sp|Q7Z2Q7|LRR70_HUMAN Leucine-rich repeat-containing protein 70 OS=Homo sapiens GN=LRRC70 PE=2 SV=1

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 110/365 (30%), Positives = 185/365 (50%), Gaps = 6/365 (1%)

Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG 86
           ++C    +  +P +   P     + L  N +S +++   TGL+ L  L L  +++  +  
Sbjct: 44  INCRNLGLSSIPKN--FPESTVFLYLTGNNISYINESELTGLHSLVALYLDNSNILYVYP 101

Query: 87  KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
           K F+   +L  + L+ N IK L    FKG + L  + L YN +  +P  VF+DL+S++ L
Sbjct: 102 KAFVQLRHLYFLFLNNNFIKRLDPGIFKGLLNLRNLYLQYNQVSFVPRGVFNDLVSVQYL 161

Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206
           +L +N LT +  GTF GM +L+ L L +N I ++    F  L+ L  L L +N L+ +  
Sbjct: 162 NLQRNRLTVLGSGTFVGMVALRILDLSNNNILRISESGFQHLENLACLYLGSNNLTKVPS 221

Query: 207 GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKL 266
             F   K L  L LS N I ++    F  L +L+ L L  + I  +    F+ + +L+ L
Sbjct: 222 NAFEVLKSLRRLSLSHNPIEAIQPFAFKGLANLEYLLLKNSRIRNVTRDGFSGINNLKHL 281

Query: 267 FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM-LHLKKLQLDSNKLQYLA 325
            L  N+++ L++ TF+ L NL  L L+ N +  +D   FE M   LK L L  N L  L 
Sbjct: 282 ILSHNDLENLNSDTFSLLKNLIYLKLDRNRIISIDNDTFENMGASLKILNLSFNNLTALH 341

Query: 326 TDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVED 385
              L  L +LI L+   NPW C+C +L +  WL ++   +      C+ P ++ G+++  
Sbjct: 342 PRVLKPLSSLIHLQANSNPWECNCKLLGLRDWLASSAITL---NIYCQNPPSMRGRALRY 398

Query: 386 MSFDD 390
           ++  +
Sbjct: 399 INITN 403

Renders cells highly sensitive to the activation by cytokines and lipopolysaccharide (LPS).

Homo sapiens (taxid: 9606)

>sp|O43300|LRRT2_HUMAN Leucine-rich repeat transmembrane neuronal protein 2 OS=Homo sapiens GN=LRRTM2 PE=2 SV=3

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/312 (33%), Positives = 149/312 (47%), Gaps = 25/312 (8%)

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
           L LR NH++EL    F S   L+ + L  N I T+    F+G  +L  + LS N I  LP
Sbjct: 66  LSLRHNHITELERDQFASFSQLTWLHLDHNQISTVKEDAFQGLYKLKELILSSNKIFYLP 125

Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
              F  LI+L+ LDLS N L+S+    F G+  L+ L L+SN +  +P  +F D + L+F
Sbjct: 126 NTTFTQLINLQNLDLSFNQLSSLHPELFYGLRKLQTLHLRSNSLRTIPVRLFWDCRSLEF 185

Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP 253
           L L  NRL                         SL  + F+ L  L+ELHL  N +  I 
Sbjct: 186 LDLSTNRLR------------------------SLARNGFAGLIKLRELHLEHNQLTKIN 221

Query: 254 AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKK 313
              F  L SL  LFL  N I  L  G       L  L L  N ++ +D   FE M +LK 
Sbjct: 222 FAHFLRLSSLHTLFLQWNKISNLTCGMEWTWGTLEKLDLTGNEIKAIDLTVFETMPNLKI 281

Query: 314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR 373
           L +D+NKL  L +  L+ L +L T+ L+ N W C   I  +A WL + + + W+    C 
Sbjct: 282 LLMDNNKLNSLDSKILNSLRSLTTVGLSGNLWECSARICALASWLGSFQGR-WEHSILCH 340

Query: 374 GPGNLGGKSVED 385
            P +  G+ + D
Sbjct: 341 SPDHTQGEDILD 352

Involved in the development and maintenance of excitatory synapse in the vertebrate nervous system. Regulates surface expression of AMPA receptors. Acts as a ligand for the presynaptic receptors NRXN1-A and NRXN1-B.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
328720058	583	PREDICTED: slit homolog 3 protein-like [	0.997	0.691	0.535	1e-125
91084011	513	PREDICTED: similar to GA20402-PA [Tribol	0.997	0.785	0.442	8e-99
195428982	614	GK17595 [Drosophila willistoni] gi|19415	0.975	0.641	0.420	1e-89
198463033	616	GA20402 [Drosophila pseudoobscura pseudo	0.995	0.652	0.416	5e-87
195167938	640	GL17930 [Drosophila persimilis] gi|19410	0.995	0.628	0.407	9e-87
195125259	617	GI12570 [Drosophila mojavensis] gi|19391	0.995	0.651	0.409	2e-86
195011627	619	GH15790 [Drosophila grimshawi] gi|193896	0.995	0.649	0.412	1e-85
195402931	608	GJ15474 [Drosophila virilis] gi|19414185	0.995	0.661	0.409	2e-84
383860991	540	PREDICTED: leucine-rich repeat-containin	0.997	0.746	0.406	3e-84
195491868	615	GE20587 [Drosophila yakuba] gi|194179849	0.975	0.640	0.417	4e-84

>gi|328720058|ref|XP_001944593.2| PREDICTED: slit homolog 3 protein-like [Acyrthosiphon pisum]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/426 (53%), Positives = 293/426 (68%), Gaps = 23/426 (5%)

Query: 1   WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
           W  +     W RC  GPC+CR E H++SCW++D EE+P  Q +P D+  IDL  N + +L
Sbjct: 152 WTITSGVSRWKRCNHGPCKCRTETHSVSCWRKDFEEIPPGQTLPYDVSAIDLSTNSIVSL 211

Query: 61  SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS-----------------------T 97
            KD F GL  LTEL L  N +  +P  +F +  NL+                        
Sbjct: 212 HKDTFKGLTNLTELDLTDNDIDFVPTAIFNTLENLTKLRFHRNRLIEVPLLFKRNTKIQI 271

Query: 98  MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
           +D+S N IK LP T F+    L ++ L  N IE  P ++F DL  LE+LDLS N L  I 
Sbjct: 272 LDMSMNHIKQLPETLFQSTKNLVLLHLYGNKIEVFPKSIFKDLSLLEDLDLSANSLLEIS 331

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
              F G+ SLKRLKLQ N++ QLP G+FDD++YL+ LSLRNNR+SFIRPGLFN  + L +
Sbjct: 332 SDIFRGVSSLKRLKLQENQLQQLPLGVFDDVEYLEVLSLRNNRISFIRPGLFNNMRRLVY 391

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L+L+ENWI+ LNG+EF+ L +L ELHLGQNY+E IP  +F NL SLEKL+L+SNNIQ+L 
Sbjct: 392 LDLTENWINLLNGNEFTDLVALNELHLGQNYLEFIPERTFKNLASLEKLYLFSNNIQQLD 451

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
             +F GL NL++LFLNNN+L+ +  K FEP+++L+KL +DSNK Q+L  D    LP L +
Sbjct: 452 VNSFYGLKNLSSLFLNNNVLKVIGDKLFEPLMNLRKLHIDSNKFQFLPNDCFDHLPKLES 511

Query: 338 LKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWA 397
           LKL+KNPWHCDC ILY+ARWLRANR+KVWDS PTCRGP +LGGK VEDM+F+DLC+GQWA
Sbjct: 512 LKLSKNPWHCDCTILYLARWLRANRQKVWDSNPTCRGPRDLGGKPVEDMTFEDLCDGQWA 571

Query: 398 SMVKLT 403
           SMVKLT
Sbjct: 572 SMVKLT 577

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91084011|ref|XP_975320.1| PREDICTED: similar to GA20402-PA [Tribolium castaneum] gi|270008251|gb|EFA04699.1| tartan/capricious-like protein [Tribolium castaneum]

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 189/427 (44%), Positives = 266/427 (62%), Gaps = 24/427 (5%)

Query: 1   WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
           W  S   + W  C +GPC+CRPE  +LSCW+Q    LP  Q++P D+  IDLGIN L+TL
Sbjct: 67  WKVSKLNERWLECAQGPCKCRPETKSLSCWQQGFATLPPLQVLPQDVISIDLGINGLTTL 126

Query: 61  SKDAFTGLYKLTELKLRKNHLSELPGKLF------------------------ISTINLS 96
           +K+AF  L  L+EL L  N L  LP  +F                            NL 
Sbjct: 127 NKNAFPMLSHLSELDLFDNELDYLPESVFDDLNNLHYLRLHKNKLEDVSHNLLFKLKNLQ 186

Query: 97  TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
           T+D+S N I+ L   FFKG ++L V+ +S N I+ +P  +F +L  LE+LD S N +  +
Sbjct: 187 TLDMSNNNIRQLHPHFFKGNLKLIVLHMSRNQIKIVPQTLFSNLGVLEDLDFSNNKIERL 246

Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
               F+ + +LKRL+L  NRI+ LP G+FD L  L++L+   N +S I   LF    +L 
Sbjct: 247 PKFLFTDLKNLKRLQLAENRIDYLPTGLFDPLSKLEYLNFGKNHISSISDKLFGNLANLK 306

Query: 217 FLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
           FL+L+ N +  +  ++F+ L +L+ELHLGQN+I  +P   F    +L+KLFL++NN++EL
Sbjct: 307 FLQLTSNHLRRVQLNDFANLQNLEELHLGQNFIAELPENCFETNNNLKKLFLFANNLEEL 366

Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLI 336
              +F GLTNLT+L +NNN+L  +    F    +L+KL LDSNK  +L + SL  L  LI
Sbjct: 367 GEKSFNGLTNLTSLLINNNILNSIHEDIFSYTPNLEKLDLDSNKFHFLPSKSLDYLDKLI 426

Query: 337 TLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
           ++KLAKNPWHCDC ILY+A W+  N+ KVWD++PTCR P +LGG  ++DMSF+DLC+GQW
Sbjct: 427 SIKLAKNPWHCDCNILYLALWVDENKNKVWDTEPTCRSPADLGGALLKDMSFNDLCDGQW 486

Query: 397 ASMVKLT 403
           ASMV L+
Sbjct: 487 ASMVNLS 493

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428982|ref|XP_002062543.1| GK17595 [Drosophila willistoni] gi|194158628|gb|EDW73529.1| GK17595 [Drosophila willistoni]

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/419 (42%), Positives = 250/419 (59%), Gaps = 25/419 (5%)

Query: 10  WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLY 69
           W  C  G CRC P+  + +CW  +++ +P  Q+IP+++  IDL  N LSTL KD F GL 
Sbjct: 144 WNHCTSGVCRCNPDTKSFTCWNTNLKSVPVTQVIPMNMVAIDLSRNMLSTLHKDTFRGLT 203

Query: 70  KLTEL------------------------KLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
            L EL                        +++ N L ++  + F    NL+ +DLS+N I
Sbjct: 204 LLKELDISNNVLDFLPFDLFQDLDSLLHLRIQNNQLEDIDARTFWKLRNLNLLDLSKNDI 263

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
             LP + F  A RLTVV +  N I++ P N+  D + LEELD+S+N +  +  G+   + 
Sbjct: 264 VLLPESIFYHAQRLTVVNMCDNQIKNFPPNLLRDQLMLEELDMSRNKIDELVSGSIRYLT 323

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
            LK L    N+I ++    F  LK L  L L NNR++ I   +FN   +L  L+L+ N I
Sbjct: 324 KLKALDFGWNQIARIDDDFFGGLKSLRTLMLHNNRITSISGTIFNNLVNLVTLDLTMNRI 383

Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
           S ++G  F++L +L EL LGQN + TIPAG F  + +L +L  +SNN+  L A  F GLT
Sbjct: 384 SHIDGQAFAELKNLNELFLGQNSMSTIPAGLFLRVSALTRLTFFSNNLTTLEADDFKGLT 443

Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
           +L  L LNNN+L+Y D +AFEP+  L+KL++DSNKL +L   +L  L  L+ +KL KNPW
Sbjct: 444 HLKILMLNNNILKYFDARAFEPLTQLEKLRIDSNKLMFLPHGALHGLDKLVAVKLDKNPW 503

Query: 346 HCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQWASMVKLT 403
           HCDC  LY+ARW+R    K+WD  +P CRGPG+LGG  V  + +DDLC+GQWASM+ L+
Sbjct: 504 HCDCRALYLARWIREFVLKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQWASMLSLS 562

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198463033|ref|XP_001352661.2| GA20402 [Drosophila pseudoobscura pseudoobscura] gi|198151085|gb|EAL30159.2| GA20402 [Drosophila pseudoobscura pseudoobscura]

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 178/427 (41%), Positives = 250/427 (58%), Gaps = 25/427 (5%)

Query: 2   IKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLS 61
           + S  +  W  C  G CRC P+  + +CW  +++ +P  Q+IP+++  IDL  N LSTL 
Sbjct: 138 LSSGSQIEWNHCTSGVCRCNPDTKSFTCWNTNLKSVPVTQVIPMNMVSIDLSRNILSTLH 197

Query: 62  KDAFTGLYKLTELKLRKNHLSELPGKLF---------------ISTI---------NLST 97
           KD F GL  L EL +  N L  LP  LF               +  I         NL+ 
Sbjct: 198 KDTFRGLTLLKELDISNNVLDFLPFDLFQDLDSLLHLRIQNNQLEDIDPRTFWKLRNLNI 257

Query: 98  MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
           +DLS+N I  LP + F  A RLTV+ +  N I++ P N+  D + LEELD+S+N +  + 
Sbjct: 258 LDLSKNEIGLLPESIFFHAQRLTVINMCDNQIKNFPPNLLRDQLELEELDMSRNKIERLG 317

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
            G+   +  LK L    N+I ++    F  LK L  L L NNR+S I   +FN   +L  
Sbjct: 318 SGSVRSLEKLKTLDFGWNQIAKIDDDFFAGLKSLRILMLHNNRISSISGTIFNNLVNLVT 377

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L+L+ N IS ++G  F  L  L EL LGQN + +IPA  F ++ +L +L L+SNN+  L 
Sbjct: 378 LDLTMNRISHIDGQAFVGLKHLNELLLGQNSMSSIPADLFLHVSALTRLTLFSNNLTTLE 437

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
              F GL +L  L LNNN+L+Y D +AFEP+  L+KL++DSNKL +L + +L  L  L+ 
Sbjct: 438 EDDFRGLGSLKILMLNNNILKYFDARAFEPLTQLEKLRIDSNKLMFLPSGALHGLDKLVA 497

Query: 338 LKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
           +KL KNPWHCDC  LY+ARW+R    K+WD  +P CRGPG+LGG  V  + +DDLC+GQW
Sbjct: 498 VKLDKNPWHCDCRALYLARWIREFVLKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQW 557

Query: 397 ASMVKLT 403
           ASM+ L+
Sbjct: 558 ASMLSLS 564

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167938|ref|XP_002024789.1| GL17930 [Drosophila persimilis] gi|194108219|gb|EDW30262.1| GL17930 [Drosophila persimilis]

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 174/427 (40%), Positives = 250/427 (58%), Gaps = 25/427 (5%)

Query: 2   IKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLS 61
           + S  +  W  C  G CRC P+  + +CW  +++ +P  Q+IP+++  IDL  N LSTL 
Sbjct: 162 LSSGSQIEWNHCTSGVCRCNPDTKSFTCWNTNLKSVPVTQVIPMNMVSIDLSRNILSTLH 221

Query: 62  KDAFTGLYKLTEL------------------------KLRKNHLSELPGKLFISTINLST 97
           KD F GL  L EL                        +++ N L ++  + F    NL+ 
Sbjct: 222 KDTFRGLTLLKELDISNNVLDFLPFDLFQDLDSLLHLRIQNNQLEDIDPRTFWKLRNLNI 281

Query: 98  MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
           +DLS+N I  LP + F  A RLTV+ +  N I++ P N+  D + LEELD+S+N +  + 
Sbjct: 282 LDLSKNEIGLLPESIFFHAQRLTVINMCDNQIKNFPPNLLRDQLELEELDMSRNKIERLG 341

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
            G+   +  LK L    N+I ++    F  LK L  L L NNR+S I   +FN   +L  
Sbjct: 342 SGSVRSLEKLKTLDFGWNQIAKIDDDFFAGLKSLRILMLHNNRISSISGTIFNNLFNLVT 401

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L+L+ N IS ++G  F  L  L EL LGQN + +IPA  F ++ +L +L L+SNN+  L 
Sbjct: 402 LDLTMNRISHIDGQAFVGLKHLNELLLGQNSMSSIPADLFLHVSALTRLTLFSNNLTTLE 461

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
              F GL +L  L LNNN+L+Y D +AFEP+  L+KL++DSNKL +L + +L  L  L+ 
Sbjct: 462 EDDFRGLGSLKILMLNNNILKYFDARAFEPLTQLEKLRIDSNKLMFLPSGALHGLDKLVA 521

Query: 338 LKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
           +KL KNPWHCDC  LY+ARW+R    K+WD  +P CRGPG+LGG  V  + +DDLC+GQW
Sbjct: 522 VKLDKNPWHCDCRALYLARWIREFVLKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQW 581

Query: 397 ASMVKLT 403
           ASM+ L+
Sbjct: 582 ASMLSLS 588

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125259|ref|XP_002007099.1| GI12570 [Drosophila mojavensis] gi|193918708|gb|EDW17575.1| GI12570 [Drosophila mojavensis]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/427 (40%), Positives = 248/427 (58%), Gaps = 25/427 (5%)

Query: 2   IKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLS 61
           + S  E  W  C  G CRC P+  + +CW  +++ +P  Q+IP+++  IDL  N LSTL 
Sbjct: 139 LASGSELEWNHCTSGVCRCNPDTKSFTCWNTNLKTVPVSQVIPMNMVAIDLSRNSLSTLH 198

Query: 62  KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL----------------- 104
           KD F GL  L +L +  N L  LP  LF    +L  + +  N                  
Sbjct: 199 KDTFRGLTLLKQLDISNNVLDFLPFDLFQDLDSLLQLRIQNNKLEDIDPRTFWKLRNLNL 258

Query: 105 -------IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
                  I  LP + F  A RLTV+ L  N I++ P N+  D + LEELD+S+N +  + 
Sbjct: 259 LDLNKNEISLLPESLFYHAQRLTVINLCDNQIKNFPPNLLRDQLMLEELDMSRNRIEELV 318

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
            G+      LK L    N+I ++    F+ L  L  L L NNR++ I   +FN   +L  
Sbjct: 319 SGSMRYQTKLKALDFGLNQIAKIDDDFFEGLTSLRTLMLHNNRITSISGTIFNNLVNLVT 378

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L+L+ N IS ++G  F++L +L EL LGQN + +IP+G F  + +L +L L+SNN+  L 
Sbjct: 379 LDLTMNRISHIDGHAFAELKNLNELFLGQNSMCSIPSGLFLQVSALTRLTLFSNNLTTLE 438

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
           A  F GLT+L  L LNNN+L++ D +AFEP+  L+KL++DSNKL YL T +L  L  L+ 
Sbjct: 439 ANDFKGLTSLKILMLNNNVLKHFDARAFEPLTQLEKLRIDSNKLMYLPTGALHGLDKLVA 498

Query: 338 LKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
           +KL KNPWHCDC  LY+ARW+R    K+WD  +P CRGPG+LGG  V  + +DDLC+GQW
Sbjct: 499 VKLDKNPWHCDCRALYLARWIREFVVKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQW 558

Query: 397 ASMVKLT 403
           ASM+ L+
Sbjct: 559 ASMLSLS 565

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195011627|ref|XP_001983239.1| GH15790 [Drosophila grimshawi] gi|193896721|gb|EDV95587.1| GH15790 [Drosophila grimshawi]

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/427 (41%), Positives = 252/427 (59%), Gaps = 25/427 (5%)

Query: 2   IKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLS 61
           + S  E  W  C  G CRC P+  + +CW  +++ +P  Q+IP+++  IDL  N LSTL 
Sbjct: 141 LASGSELEWNHCTSGVCRCNPDTKSFTCWNTNLKTVPVTQVIPMNMVAIDLSRNALSTLH 200

Query: 62  KDAFTGLYKLTEL------------------------KLRKNHLSELPGKLFISTINLST 97
           KD F GL  L EL                        +++ N L ++  + F    NL+ 
Sbjct: 201 KDTFRGLTLLKELDISNNVLDFLPFDLFQDLDSLLQLRIQNNQLEDVDPRTFWKLRNLNL 260

Query: 98  MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
           +DLS+N I  LP + F  A RLTV+ L  N IE+ P N+  D + LEELD+S+N +  + 
Sbjct: 261 LDLSKNEIAQLPESVFYHAQRLTVINLCDNQIENFPPNLLRDQLMLEELDMSRNQIEQLV 320

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
            G+      LK L    N+I ++    F+ LK L  L L NNR++ I   +FN   +L  
Sbjct: 321 SGSMRYQTKLKALDFGLNQIAKIEDDFFEGLKSLRTLMLHNNRITSISGTIFNNLVNLVT 380

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L+L+ N IS +NG  F++L +L EL LGQN + +IPA  F +  +L +L L+SNN+  L 
Sbjct: 381 LDLTMNRISHINGQAFAELKNLNELLLGQNAMSSIPADLFLHASALTRLTLFSNNLTTLE 440

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
              F GL++L  L LNNN+L+Y D +AF+P+  L+KL++DSNKL +L   +L  L  L+ 
Sbjct: 441 ENDFEGLSSLKILMLNNNILKYFDARAFQPLTQLEKLRIDSNKLMFLPHGALHGLDKLVA 500

Query: 338 LKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
           +KL KNPWHCDC  LY+ARW+R    K+WD  +P CRGPG+LGG  V  + +DDLC+GQW
Sbjct: 501 VKLDKNPWHCDCRALYLARWIREFVVKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQW 560

Query: 397 ASMVKLT 403
           ASM+ L+
Sbjct: 561 ASMLSLS 567

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195402931|ref|XP_002060053.1| GJ15474 [Drosophila virilis] gi|194141851|gb|EDW58264.1| GJ15474 [Drosophila virilis]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/427 (40%), Positives = 250/427 (58%), Gaps = 25/427 (5%)

Query: 2   IKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLS 61
           + S  E  W  C  G CRC P+  + +CW  +++ +P  Q+IP+++  IDL  N LSTL 
Sbjct: 130 LASGSELEWNHCTSGVCRCNPDTKSFTCWNTNLKTVPVSQVIPMNMVAIDLSRNVLSTLH 189

Query: 62  KDAFTGLYKLTEL------------------------KLRKNHLSELPGKLFISTINLST 97
           KD F GL  L EL                        +++ N L ++  + F    NL+ 
Sbjct: 190 KDTFRGLTLLKELDISNNLLDFLPFDLFRDLDSLLQLRIQNNQLEDIDARTFWKLRNLNL 249

Query: 98  MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
           +DL +N I  LP + F  A RLTV+ L  N I++ P N+  D + LEELD+S+N +  + 
Sbjct: 250 LDLHKNEISLLPESLFYHAQRLTVINLCDNQIKNFPPNLLRDQLMLEELDMSRNRIEQLV 309

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
            G+      LK L    N+I ++    F+ LK L  L+L NNR+S I    FN   +L  
Sbjct: 310 SGSMRYQTKLKALDFGWNQIAKIEDDFFEGLKSLRTLNLYNNRISSISATTFNNLVNLIT 369

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L+L+ N IS ++G  F++L +L EL LGQN + +IP   F  + +L +L L+SNN+  L 
Sbjct: 370 LDLTMNRISHIDGQAFAELKNLNELLLGQNSLSSIPGDLFLRVGALTRLTLFSNNLTTLE 429

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
           A  F GL +L  L LNNN+L++ D +AFEP+  L+KL++DSNKL YL   +L  L  L+ 
Sbjct: 430 ANDFKGLDSLKILMLNNNILKHFDARAFEPLTQLEKLRIDSNKLMYLPHGALHGLNQLVA 489

Query: 338 LKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
           +KL KNPWHCDC  LY+ARW+R    K+WD  +P CRGPG+LGG  V  + +DDLC+GQW
Sbjct: 490 VKLDKNPWHCDCRALYLARWIREFVVKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQW 549

Query: 397 ASMVKLT 403
           ASM+ L+
Sbjct: 550 ASMLSLS 556

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860991|ref|XP_003705970.1| PREDICTED: leucine-rich repeat-containing protein 15-like [Megachile rotundata]

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 180/443 (40%), Positives = 246/443 (55%), Gaps = 40/443 (9%)

Query: 1   WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
           W     E+ W  C EGPCRC+PE  ++SCW+Q++ +LP  Q++P D+  +DLG N+L+ L
Sbjct: 56  WQMGTAEEDWEICAEGPCRCQPETKSVSCWRQNLLDLPAAQLVPRDVLKLDLGGNRLTAL 115

Query: 61  SKDAFT------------------------GLYKLTELKLRKNHLSELPGKLFISTINLS 96
            KD F                          L+ +T L+L KN L EL    FIST NL 
Sbjct: 116 HKDTFLDMTRLNHLDLGDNSIEHLPLNLFFSLHAVTRLRLSKNLLRELHRSQFISTRNLR 175

Query: 97  TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
            +D S N ++TLP + F     L V+ LS N I SL    F  L +LEEL L +N L+SI
Sbjct: 176 ILDASSNRLRTLPDSLFLSTTSLAVLDLSRNRISSLIPGTFRGLTALEELSLGKNRLSSI 235

Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
               F  + SLK L L+ NR+ +LP G+F     L  L+ R+N+L+ I   L N  + L 
Sbjct: 236 PSDMFDDLTSLKFLGLEENRLRELPDGLFRAQTTLRELNARSNQLTEISGSLLNPLEQLR 295

Query: 217 FLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
            LE+S N I+ ++   F  L +LKEL LG N I  +  G+F+   SLE+L LY+N I+ L
Sbjct: 296 SLEMSSNKIARIDTTAFRGLIALKELQLGHNRIGNLTPGTFSKSGSLERLVLYANGIESL 355

Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLI 336
             G F GL NLT+LFL++N LR +  + F    +L+KLQL+SN L  L    L  +P + 
Sbjct: 356 PRGAFQGLFNLTSLFLHSNRLRIMHPELFHDTPNLRKLQLESNYLSSLPARILDAVPYIE 415

Query: 337 TLKLAKNPWHCDCAILYMARWLRA--------------NRRKVWD--SKPTCRGPGNLGG 380
            L+LA+NPWHCDCA  Y+A WL+               +   VW+      CRGPG LGG
Sbjct: 416 QLRLARNPWHCDCAAAYLATWLQKRYLAQTNGTAVRPMDNFGVWEFGGGAVCRGPGTLGG 475

Query: 381 KSVEDMSFDDLCEGQWASMVKLT 403
           K +  ++F +LCEGQWASM  L 
Sbjct: 476 KPLLRLTFHELCEGQWASMKGLV 498

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491868|ref|XP_002093748.1| GE20587 [Drosophila yakuba] gi|194179849|gb|EDW93460.1| GE20587 [Drosophila yakuba]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 175/419 (41%), Positives = 253/419 (60%), Gaps = 25/419 (5%)

Query: 10  WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLY 69
           W  C  G CRC P+  + +CW  +++ +P  Q+IP+++  IDL  N LST+ KD F GL 
Sbjct: 146 WNHCTSGVCRCNPDTKSFTCWNTNLKSVPVTQVIPMNMVNIDLSRNILSTMHKDTFRGLT 205

Query: 70  KLTEL------------------------KLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
            L EL                        +++ N L ++  + F    NL+ +DLS+N I
Sbjct: 206 VLKELDISHNVLDFLPFDLFQDLDSLLVLRIQNNQLEDIDHRTFWKLRNLNILDLSKNEI 265

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
             LP + F  A RLTV+ +  N I++ P N+  D + LEELD+S+N ++ +  G+   + 
Sbjct: 266 GMLPESIFYHAQRLTVINMCDNQIQNFPPNLLRDQLMLEELDMSRNKISELSSGSIRYLS 325

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
            LK L    N+I ++    F  LK L  LSL NNR+S +   +FN   +L  L+L+ N I
Sbjct: 326 KLKTLDFGWNQIAKIDDDFFAGLKSLRTLSLHNNRISSLSGTIFNNLANLITLDLTTNRI 385

Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
           S ++G+ F +L +L EL LGQN + +IPA  F N+ +L +L L+SNN+  L A  F GL+
Sbjct: 386 SHMDGNAFVELNNLNELFLGQNSMSSIPADLFLNVSALTRLTLFSNNLTTLEADDFQGLS 445

Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
           NL  L LNNN+L+  D +AFEP+  L+KL++DSNKL +L   +L  L NL+ +KL KNPW
Sbjct: 446 NLKILLLNNNILKNFDARAFEPLAQLEKLRIDSNKLMFLPHGALHGLENLVAVKLDKNPW 505

Query: 346 HCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQWASMVKLT 403
           HCDC  LY+ARW+R    K+WD  +P CRGPG+LGG  V  + +DDLC+GQWASM+ L+
Sbjct: 506 HCDCRALYLARWIREFVLKLWDGQQPMCRGPGDLGGHEVGLLRYDDLCDGQWASMLSLS 564

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	404
UNIPROTKB|Q8TF66	581	LRRC15 "Leucine-rich repeat-co	0.883	0.614	0.317	3.6e-41
RGD|70551	578	Lrrc15 "leucine rich repeat co	0.821	0.574	0.330	5.9e-41
MGI|MGI:1921738	579	Lrrc15 "leucine rich repeat co	0.883	0.616	0.314	2.9e-39
MGI|MGI:1919006	547	Cpn2 "carboxypeptidase N, poly	0.851	0.628	0.312	2.1e-38
UNIPROTKB|P22792	545	CPN2 "Carboxypeptidase N subun	0.831	0.616	0.319	2.6e-38
ZFIN|ZDB-GENE-031113-8	564	lrrc15 "leucine rich repeat co	0.871	0.624	0.302	1e-36
UNIPROTKB|E1BG29	583	GP5 "Uncharacterized protein"	0.928	0.643	0.303	3.3e-36
RGD|2724	567	Gp5 "glycoprotein V (platelet)	0.905	0.645	0.300	2.7e-35
UNIPROTKB|E1C7Z9	819	E1C7Z9 "Uncharacterized protei	0.381	0.188	0.356	7e-25
WB|WBGene00022129	542	lron-11 [Caenorhabditis elegan	0.797	0.594	0.308	7.2e-34

UNIPROTKB|Q8TF66 LRRC15 "Leucine-rich repeat-containing protein 15" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 114/359 (31%), Positives = 175/359 (48%)

Query:    27 LSCWKQDMEELPFDQIIPVD-IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
             LS     ++ LP      +D +  + L  NQL  +    F+    L EL+L  NHL  +P
Sbjct:   106 LSLANNKLQVLPIGLFQGLDSLESLLLSSNQLLQIQPAHFSQCSNLKELQLHGNHLEYIP 165

Query:    86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
                F   + L+ ++L +N +  +    F+    L V++L  N +  +P   F  L++L+E
Sbjct:   166 DGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQE 225

Query:   146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
             L L QN +  +  G F   ++L+RL L +N I+QLPP +F  L  L+ L+L  N L  + 
Sbjct:   226 LALQQNQIGLLSPGLFHNNHNLQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELS 285

Query:   206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
             PG+F    +L  L L +N ISSL  + FS L  L+ L L +N I  I  G+F  L  L +
Sbjct:   286 PGIFGPMPNLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRE 345

Query:   266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
             L L++N +Q+L                     R L    F  +  L  +QL +N+L+ L 
Sbjct:   346 LSLHTNALQDLDGNVFRMLANLQNISLQNNRLRQLPGNIFANVNGLMAIQLQNNQLENLP 405

Query:   326 TDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW-DSKPTCRGPGNLGGKSV 383
                   L  L  L+L  NPW CD  IL +  WL  N+ ++  D+ P C  P N+ G+S+
Sbjct:   406 LGIFDHLGKLCELRLYDNPWRCDSDILPLRNWLLLNQPRLGTDTVPVCFSPANVRGQSL 464

GO:0016021 "integral to membrane" evidence=IEA

RGD|70551 Lrrc15 "leucine rich repeat containing 15" [Rattus norvegicus (taxid:10116)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 110/333 (33%), Positives = 164/333 (49%)

Query:    52 LGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPST 111
             L  NQL  +    F+    L EL+L  N+L  +P + F   + L+ ++L +N    L   
Sbjct:   132 LSNNQLVQIQPAQFSQFSNLRELQLHGNNLESIPEEAFDHLVGLTKLNLGRNSFTHLSPR 191

Query:   112 FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
              F+    L V++L  N +  +P   F  L +L+EL L +N + ++  G F    +L+RL 
Sbjct:   192 LFQHLGNLQVLRLHENRLSDIPMGTFDALGNLQELALQENQIGTLSPGLFHNNRNLQRLY 251

Query:   172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGD 231
             L +N I+QLPPGIF  L  L+ L+L  N L  + PG+F    +L  L L  N I+SL  +
Sbjct:   252 LSNNHISQLPPGIFMQLPQLNKLTLFGNSLRELSPGVFGPMPNLRELWLYNNHITSLADN 311

Query:   232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXX 291
              FS L  L+ L L  N +  I  G+F  L +L +L L++N +Q+L               
Sbjct:   312 TFSHLNQLQVLILSHNQLTYISPGAFNGLTNLRELSLHTNALQDLDSNVFRSLANLQNIS 371

Query:   292 XXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI 351
                   R L    F  +  L  +QL +N L+ L       L NL  L+L  NPW CD  I
Sbjct:   372 LQSNRLRQLPGSIFANVNGLTTIQLQNNNLENLPLGIFDHLVNLCELRLYDNPWRCDSDI 431

Query:   352 LYMARWLRANRRKVW-DSKPTCRGPGNLGGKSV 383
             L +  WL  NR ++  D+ P C  P N+ G+S+
Sbjct:   432 LPLHNWLLLNRARLGTDTLPVCSSPANVRGQSL 464

GO:0005622 "intracellular" evidence=IDA

GO:0007154 "cell communication" evidence=TAS

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921738 Lrrc15 "leucine rich repeat containing 15" [Mus musculus (taxid:10090)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 113/359 (31%), Positives = 173/359 (48%)

Query:    27 LSCWKQDMEELPFDQIIPVD-IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
             LS     ++ LP      V+ +  + L  NQL  +    F+    L EL+L  N+L  +P
Sbjct:   106 LSLANNKLKNLPVRLFQDVNNLETLLLSNNQLVQIQPAQFSQFSNLKELQLYGNNLEYIP 165

Query:    86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
               +F   + L+ ++L  N    L    F+    L V++L  N +  +P   F  L +L+E
Sbjct:   166 EGVFDHLVGLTKLNLGNNGFTHLSPRVFQHLGNLQVLRLYENRLSDIPMGTFDALGNLQE 225

Query:   146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
             L L +N + ++  G F    +L+RL L +N I+ LPPGIF  L +L+ L+L  N L  + 
Sbjct:   226 LALQENQIGTLSPGLFHNNRNLQRLYLSNNHISHLPPGIFMQLPHLNKLTLFGNSLKELS 285

Query:   206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
             PG+F    +L  L L  N I+SL  + FS L  L+ L L  N +  I  G+F  L +L +
Sbjct:   286 PGVFGPMPNLRELWLYNNHITSLPDNAFSHLNQLQVLILSHNQLSYISPGAFNGLTNLRE 345

Query:   266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
             L L++N +Q+L                     R L    F  +  L  +QL +N L+ L 
Sbjct:   346 LSLHTNALQDLDGNVFRSLANLRNVSLQNNRLRQLPGSIFANVNGLMTIQLQNNNLENLP 405

Query:   326 TDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW-DSKPTCRGPGNLGGKSV 383
                   L NL  L+L  NPW CD  IL +  WL  NR ++  D+ P C  P ++ G+S+
Sbjct:   406 LGIFDHLGNLCELRLYDNPWRCDSNILPLHDWLILNRARLGTDTLPVCSSPASVRGQSL 464

GO:0005622 "intracellular" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1919006 Cpn2 "carboxypeptidase N, polypeptide 2" [Mus musculus (taxid:10090)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 108/346 (31%), Positives = 158/346 (45%)

Query:    48 RVIDLGI--NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
             R+ DL I  + +S LS   F+ L  L +L L  + L+ LP  LF     L ++ L  N +
Sbjct:    98 RLQDLEITGSPVSNLSAHIFSNLSSLEKLTLDFDRLAGLPEDLFCHMDILESLQLQGNQL 157

Query:   106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
             +TLP   F+    L  + L+ N +  LP   F  L  L+ L LS N+L  +  G    + 
Sbjct:   158 RTLPGRLFQSLRDLRTLNLAQNLLTQLPKGAFQSLTGLQMLKLSNNMLARLPEGALGSLS 217

Query:   166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
             SL+ L L  N I +L P +F  L  L+ L L++N +  +   LF+   +LTFL L +N +
Sbjct:   218 SLQELFLDGNAITELSPHLFSQLFSLEMLWLQHNAICHLPVSLFSSLHNLTFLSLKDNAL 277

Query:   226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXX 285
              +L    F+    L  L L  N +ETIP G+F NL  L  L L  N I +L         
Sbjct:   278 RTLPEGLFAHNQGLLHLSLSYNQLETIPEGAFTNLSRLVSLTLSHNAITDLPEHVFRNLE 337

Query:   286 XXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
                           L    F  +  L+ L L  N+L  L         +L  L L  NPW
Sbjct:   338 QLVKLSLDSNNLTALHPALFHNLSRLQLLNLSRNQLTTLPGGIFDTNYDLFNLALLGNPW 397

Query:   346 HCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
              CDC + Y+  WLR    ++ ++   C GP  L G+ V ++  + L
Sbjct:   398 QCDCHLSYLTSWLRLYNNQISNTHTFCAGPAYLKGQLVPNLKQEQL 443

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P22792 CPN2 "Carboxypeptidase N subunit 2" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 108/338 (31%), Positives = 156/338 (46%)

Query:    48 RVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
             R+ DL +   S   LS + F+ L  L +L L  N L  LP  LF     L ++ L  N +
Sbjct:    98 RLEDLEVTGSSFLNLSTNIFSNLTSLGKLTLNFNMLEALPEGLFQHLAALESLHLQGNQL 157

Query:   106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
             + LP   F+    L  + L+ N +  LP  +FH L SL+ L LS N L+ +  G F  + 
Sbjct:   158 QALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQGVFGKLG 217

Query:   166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
             SL+ L L SN I++LPP +F  L  L+ L L+ N ++ +   +F    +LTFL L  N +
Sbjct:   218 SLQELFLDSNNISELPPQVFSQLFCLERLWLQRNAITHLPLSIFASLGNLTFLSLQWNML 277

Query:   226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXX 285
               L    F+    L  L L  N +ET+  G+FA+L +L  L L  N I  L         
Sbjct:   278 RVLPAGLFAHTPCLVGLSLTHNQLETVAEGTFAHLSNLRSLMLSYNAITHLPAGIFRDLE 337

Query:   286 XXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
                           L    F+ +  L+ L L  N+L  L         NL  L L  NPW
Sbjct:   338 ELVKLYLGSNNLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLALHGNPW 397

Query:   346 HCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
              CDC + Y+  WL+    ++ + +  C GP  L G+ V
Sbjct:   398 QCDCHLAYLFNWLQQYTDRLLNIQTYCAGPAYLKGQVV 435

GO:0050821 "protein stabilization" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

ZFIN|ZDB-GENE-031113-8 lrrc15 "leucine rich repeat containing 15" [Danio rerio (taxid:7955)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 107/354 (30%), Positives = 171/354 (48%)

Query:    47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
             +  + L  N+L  L     T L  + +L L KN LS L    F     L  + L +N IK
Sbjct:   123 LTTLTLSGNKLEVLPSSLLTPLVNVNKLDLSKNLLSSLSEDAFRGLDQLEMLMLQRNSIK 182

Query:   107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
              L S+ F+G   L  + L  N +  +PA +F DL++LE L L  N +  +    F+ +  
Sbjct:   183 QLHSSTFQGLSHLRSLFLQQNELTDIPAGLFDDLVNLEVLHLQDNKIEQLPANLFAKVQK 242

Query:   167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
             LK+L L SNR++ LP GIF +L  L   SL +NRLS + P  F     L  L L +N ++
Sbjct:   243 LKKLYLSSNRLSLLPSGIFLNLPNLTHFSLYDNRLSRLMPETFGPMA-LQELWLYDNLLT 301

Query:   227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXX 286
              L  + FS LT+++ L + +N I+ I  G+F  L  L+++ L++N +  +          
Sbjct:   302 HLEENVFSNLTNIRLLVISRNRIQYISPGAFNGLIELKEVSLHTNRLTNIEPGIFRGLPN 361

Query:   287 XXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346
                        + +  +  + +  L  L++ +N LQ L  D L+ L  +  + L +NPW 
Sbjct:   362 LANISIENNQIKQIPIQLLDGVSRLSLLEMQNNSLQNLPKDFLNTLSIVENVILHENPWR 421

Query:   347 CDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCEGQWASM 399
             CD  I+    WL  +  KV + S   C  P  L G+ V ++  DD+   +  +M
Sbjct:   422 CDQDIIPFWDWLSQHSEKVKNLSLVMCSSPPPLNGRIVRELIEDDIMVQEMTTM 475

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BG29 GP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 3.3e-36, P = 3.3e-36
 Identities = 117/385 (30%), Positives = 172/385 (44%)

Query:    24 IHTLSCWKQDMEELP---FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH 80
             + TL   +  +  LP    D ++ ++   +D G N+L +L ++ F  L  L EL L +N 
Sbjct:   100 LKTLRLSRNKITHLPSALLDNLVLLEQLFLD-G-NELKSLDQNLFQKLVHLQELFLNQNQ 157

Query:    81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
             L+ LP  LF    NL  +DLS N +  LP   F   ++L  + L  N + SL + +   L
Sbjct:   158 LAFLPASLFTHLGNLKLLDLSGNNLTHLPEGLFGVQVKLQKLLLHSNRLASLESGLLDSL 217

Query:   141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
              +L EL L  N L SI  G F  + SL  L L  NR+  LP  +F     L FL+L  N 
Sbjct:   218 RALTELQLHTNHLRSIVPGAFDRLRSLSSLTLSENRLEFLPSALFLHSHNLTFLTLSENP 277

Query:   201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN-YIETIPAGSFAN 259
             L  +   LF     L  L L    + +L    F  LT L+ L +  +  +  +P  +F  
Sbjct:   278 LEELPKVLFGEIGGLRELRLKSTQLRTLPAAAFRNLTGLRVLEVSLSPRLSALPEDAFRG 337

Query:   260 LQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSN 319
             L  L+ L L S  +  L                     R L +  F  +  L+++QLD N
Sbjct:   338 LGELQVLALSSTGLASLPAGLLRGLCRLRHVSLRSNRLRALPSALFRNLSSLEEVQLDHN 397

Query:   320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPT-CRGPGNL 378
             +L+ L  D+   LP L  + L  NPW CDC +     WLR +   V  ++P  C GPG  
Sbjct:   398 QLETLPGDAFEALPRLAGVLLGHNPWRCDCGLGPFLAWLRRHAGLVGRAEPPRCHGPGPH 457

Query:   379 GGKSVEDMSFDDL-CEG--QWASMV 400
              G+ +  +   DL C     W  +V
Sbjct:   458 AGRLLWTLQAGDLGCPRPESWTRLV 482

GO:0010544 "negative regulation of platelet activation" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

RGD|2724 Gp5 "glycoprotein V (platelet)" [Rattus norvegicus (taxid:10116)]

 Score = 383 (139.9 bits), Expect = 2.7e-35, P = 2.7e-35
 Identities = 114/379 (30%), Positives = 175/379 (46%)

Query:    24 IHTLSCWKQDMEELP---FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH 80
             + TL   +  +  LP    D+++ ++   +D   N L  L ++ F  L  L +L L +N 
Sbjct:   100 LKTLRLTRNKISHLPRAILDKMVLLEQLFLDH--NALRDLDQNLFQKLLNLRDLCLNQNQ 157

Query:    81 LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
             LS LP  LF S   L  +DLS+N +  LP       I+L  + L  N + SL + +  +L
Sbjct:   158 LSFLPANLFSSLGKLKVLDLSRNNLTHLPQGLLGAQIKLEKLLLYSNRLMSLDSGLLANL 217

Query:   141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
              +L EL L +N L SI  G F  + +L  L L  N +  LPP +F  + +L  L+L  N 
Sbjct:   218 GALTELRLERNHLRSIAPGAFDSLGNLSTLTLSGNLLESLPPALFLHVSWLTRLTLFENP 277

Query:   201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN-YIETIPAGSFAN 259
             L  +   LF     L  L L+   + +L    F  L+ L+ L L +N  +  +P G F  
Sbjct:   278 LEELPEVLFGEMAGLRELWLNGTHLRTLPAAAFRNLSGLQTLGLTRNPLLSALPPGMFHG 337

Query:   260 LQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSN 319
             L  L  L +++N ++EL                     R L    F  +  L  +QL+ N
Sbjct:   338 LTELRVLAVHTNALEELPEDALRGLGRLRQVSLRHNRLRALPRTLFRNLSSLVTVQLEHN 397

Query:   320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW-DSKPTCRGPGNL 378
             +L+ L  D  + LP L  + L  NPW CDC +    +WLR +   +  D  P C GP   
Sbjct:   398 QLKTLPGDVFAALPQLTRVLLGHNPWLCDCGLWPFLQWLRHHLELLGRDEPPQCNGP--- 454

Query:   379 GGKSVEDMSFDDLCEG-QW 396
               +S   ++F +L +G QW
Sbjct:   455 --ESRASLTFWELLQGDQW 471

GO:0005518 "collagen binding" evidence=IEA;ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0007160 "cell-matrix adhesion" evidence=IEA;ISO

GO:0007596 "blood coagulation" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0010544 "negative regulation of platelet activation" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C7Z9 E1C7Z9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 7.0e-25, Sum P(2) = 7.0e-25
 Identities = 56/157 (35%), Positives = 86/157 (54%)

Query:   120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
             T V     A+ ++P ++       E L+L+ N +T I    FSG+  L+ L+L  N+I+ 
Sbjct:    50 TTVDCHGTALRAVPKSIPR---GTERLELNGNNITRIHKNDFSGLKQLRVLQLMENQISV 106

Query:   180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
             +  G FDD+K L+ L L  N+L  +   LF + + L+ L+LSEN+I ++    F   T L
Sbjct:   107 VERGAFDDMKELERLRLNRNQLHTLPELLFQHNQALSRLDLSENFIQAIPRKAFRGATDL 166

Query:   240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
             K L L +N I  I  G+F  L+ LE L L +NNI  +
Sbjct:   167 KNLQLDKNQISCIEDGAFRALRGLEVLTLNNNNITSI 203

GO:0005615 "extracellular space" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0022028 "tangential migration from the subventricular zone to the olfactory bulb" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0040023 "establishment of nucleus localization" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0050919 "negative chemotaxis" evidence=IEA

WB|WBGene00022129 lron-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 369 (135.0 bits), Expect = 7.2e-34, P = 7.2e-34
 Identities = 103/334 (30%), Positives = 156/334 (46%)

Query:    55 NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
             N ++ LS D F+ L  L  L L  N L  LP ++F    NL T+ +S N ++  P  F  
Sbjct:    80 NSITHLSADVFSTLPSLRVLDLSSNSLLSLPNEVFSKLKNLKTLIISSNDVQLGPECF-A 138

Query:   115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
             G  +L  + ++ N +  LP +V   L  L  LDLS N L S+     + +  L+ LKL+ 
Sbjct:   139 GLSQLQTLSIADNRLSFLPPSVLKPLSGLRNLDLSANKLLSMPASVMNNLGGLETLKLKQ 198

Query:   175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
             N ++ L  G+F   K L  L +  N +  I  G     + L  L L+ N +  L G+ +S
Sbjct:   199 NLLSSLETGMFLSQKELKHLDVSENLIGDIEEGALYGLEKLETLNLTNNQLVRLPGNTWS 258

Query:   235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL-YSNNIQELHXXXXXXXXXXXXXXXX 293
              L +LK L L  N   ++   SF  L +L+ L + +S N++ +                 
Sbjct:   259 -LPALKTLDLSSNLFVSLETASFDGLPALQYLNISHSRNLKTIQMATFVQLSSLHWLSIS 317

Query:   294 XXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILY 353
                  ++   AF P+  L  L L +N+L+Y+A   L   PN+  L LA N WHC C +  
Sbjct:   318 SSALTHIHPSAFNPIPPLSHLDLSNNELRYVAPGMLQW-PNIRNLHLANNDWHCSCDL-- 374

Query:   354 MARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMS 387
               R    N R   D+K  C GP NL G  + ++S
Sbjct:   375 --RVSNLNPRD--DAK--CSGPENLAGAPINELS 402

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80X72	LRC15_MOUSE	No assigned EC number	0.3324	0.9108	0.6355	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	404
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-13
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-13
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-08
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-08
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	8e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	3e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	2e-06
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	8e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	8e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	5e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	0.004
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 80/257 (31%), Positives = 115/257 (44%), Gaps = 10/257 (3%)

Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELD 147
           +I TINLS    +  L   +P   F  +  L  + LS N    S+P      + +LE LD
Sbjct: 94  YIQTINLS----NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLD 146

Query: 148 LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
           LS N+L+           SLK L L  N +    P    +L  L+FL+L +N+L    P 
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKL 266
                K L ++ L  N +S     E   LTSL  L L   N    IP+ S  NL++L+ L
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYL 265

Query: 267 FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT 326
           FLY N +      +   L  L +L L++N L     +    + +L+ L L SN       
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Query: 327 DSLSLLPNLITLKLAKN 343
            +L+ LP L  L+L  N
Sbjct: 326 VALTSLPRLQVLQLWSN 342

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 15/260 (5%)

Query: 70  KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
            LT L L  N+++++P  + +   NL  +DLS N I++LPS   +    L  + LS+N +
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDL 175

Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK 189
             LP  +  +L +L  LDLS N ++ +       + +L+ L L +N I +L   +  +LK
Sbjct: 176 SDLPK-LLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIELLSSLS-NLK 232

Query: 190 YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI 249
            L  L L NN+L  + P       +L  L+LS N ISS+       LT+L+EL L  N +
Sbjct: 233 NLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSL 289

Query: 250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML 309
                     L  LE L    N +  L A      + L    + +N             L
Sbjct: 290 SNALPLIALLLLLLELL---LNLLLTLKALELKLNSILLNNNILSNGETSSPE-----AL 341

Query: 310 HLKKLQLDSNKLQYLATDSL 329
            + +   +   L     +S 
Sbjct: 342 SILESLNNLWTLDNALDESN 361

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 23/60 (38%), Positives = 34/60 (56%)

Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL 297
           +LK L L  N +  IP G+F  L +L+ L L  NN+  +    F+GL +L +L L+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
            L  + LS N +  +P   F  L +L+ LDLS N LTSI    FSG+ SL+ L L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 25/60 (41%), Positives = 31/60 (51%)

Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
           +L+ LDLS N LT I  G F G+ +LK L L  N +  + P  F  L  L  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI 273
           +L  L+LS N ++ +    F  L +LK L L  N + +I   +F+ L SL  L L  NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.5 bits (132), Expect = 6e-10
 Identities = 26/60 (43%), Positives = 33/60 (55%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
           NL ++DLS N +  +P   FKG   L V+ LS N + S+    F  L SL  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 85/311 (27%), Positives = 120/311 (38%), Gaps = 62/311 (19%)

Query: 43  IPVDI------RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINL 95
           IP DI      +V+DLG N L     ++ T L  L  L L  N L  ++P +L       
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL------- 208

Query: 96  STMDLSQNLIKTLPSTFFKGAIR-LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
                              G ++ L  + L YN +          L SL  LDL  N LT
Sbjct: 209 -------------------GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF-IRPGLFNYFK 213
                                    +P     +LK L +L L  N+LS  I P +F+  +
Sbjct: 250 G-----------------------PIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFS-LQ 284

Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYSNN 272
            L  L+LS+N +S    +   QL +L+ LHL   N+   IP     +L  L+ L L+SN 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNK 343

Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
                        NLT L L+ N L     +      +L KL L SN L+     SL   
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 333 PNLITLKLAKN 343
            +L  ++L  N
Sbjct: 404 RSLRRVRLQDN 414

Length = 968

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 13/138 (9%)

Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD-- 187
            S+    F++  SL  + +  +V TSI    FSG  SLK + L S+ +  +    F +  
Sbjct: 1   TSIGDYAFYNC-SLTSITIPSSV-TSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCS 57

Query: 188 -LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
            L  +       + L+ I    F+    LT + +  N ++++    FS   SLK + +  
Sbjct: 58  SLTSITI----PSSLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITIPS 111

Query: 247 NYIETIPAGSFANLQSLE 264
           + + TI   +F+N  SL+
Sbjct: 112 S-VTTIGDYAFSNCSSLK 128

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 8e-08
 Identities = 23/58 (39%), Positives = 30/58 (51%)

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
           +LK L L +NR+  +P G F  L  L  L L  N L+ I P  F+    L  L+LS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 343 NPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLC 392
           NP+ CDC + ++ RWL+AN          C  P +L G  +E +  +  C
Sbjct: 1   NPFICDCELRWLLRWLQANEHLQDPVDLRCASPSSLRGPLLELLHSEFKC 50

Length = 51

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 90/321 (28%), Positives = 125/321 (38%), Gaps = 31/321 (9%)

Query: 50  IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLS------- 101
           +DL  N L+     +   L  L  L L +N LS  +P  +F S   L ++DLS       
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGE 299

Query: 102 --------QNL-IKTLPSTFFKGAI--------RLTVVQLSYNAIE-SLPANV-FHDLIS 142
                   QNL I  L S  F G I        RL V+QL  N     +P N+  H+  +
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN--N 357

Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
           L  LDLS N LT           +L +L L SN +    P      + L  + L++N  S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
              P  F     + FL++S N +          + SL+ L L +N        SF + + 
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KR 476

Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
           LE L L  N            L+ L  L L+ N L             L  L L  N+L 
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 323 YLATDSLSLLPNLITLKLAKN 343
                S S +P L  L L++N
Sbjct: 537 GQIPASFSEMPVLSQLDLSQN 557

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 75/280 (26%), Positives = 120/280 (42%), Gaps = 9/280 (3%)

Query: 22  PEIHTLSCWKQDME-ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH 80
           P +  L  W      E+P +     ++ V+DL  N L+    +       L +L L  N 
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 81  L-SELPGKLFISTINLSTMDLSQN-LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
           L  E+P  L     +L  + L  N     LPS F K  + +  + +S N ++    +   
Sbjct: 392 LEGEIPKSLGACR-SLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQGRINSRKW 449

Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
           D+ SL+ L L++N           G   L+ L L  N+ +   P     L  L  L L  
Sbjct: 450 DMPSLQMLSLARNKFFG-GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSF 257
           N+LS   P   +  K L  L+LS N +S      FS++  L +L L QN +   IP  + 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK-NL 567

Query: 258 ANLQSLEKLFLYSNNIQELHAGTFAGLT-NLTALFLNNNL 296
            N++SL ++ +  N++      T A L  N +A+  N +L
Sbjct: 568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607

Length = 968

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 5/103 (4%)

Query: 204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
           I    F     LT + +  + ++S+    FS  TSLK + L  + + +I + +F N  SL
Sbjct: 3   IGDYAFYNCS-LTSITIPSS-VTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSL 59

Query: 264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
             + +  +++  +    F+  ++LT++ + +N L  + + AF 
Sbjct: 60  TSITI-PSSLTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFS 100

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 5/158 (3%)

Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
           +L  L  L L  NRL      L     +LT L+L  N I+ +        ++LKEL L  
Sbjct: 91  NLLPLPSLDLNLNRLRSNISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD 149

Query: 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
           N IE++P     NL +L+ L L  N++ +L     + L+NL  L L+ N +  L  +   
Sbjct: 150 NKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEIEL 207

Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
               L++L L +N +      SLS L NL  L+L+ N 
Sbjct: 208 L-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
           ++ +DL  N+L+ +   AF GL  L  L L  N+L+ +  + F    +L ++DLS N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 76/262 (29%), Positives = 104/262 (39%), Gaps = 33/262 (12%)

Query: 64  AFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQN-LIKTLPSTF------FK- 114
           A T L +L  L+L  N  S E+P  L     NL+ +DLS N L   +P         FK 
Sbjct: 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 115 ---------------GAIR-LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
                          GA R L  V+L  N+      + F  L  +  LD+S N L     
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445

Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIF--DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
                M SL+ L L  N+     P  F    L+ LD   L  N+ S   P        L 
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD---LSRNQFSGAVPRKLGSLSELM 502

Query: 217 FLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQE 275
            L+LSEN +S    DE S    L  L L  N +   IPA SF+ +  L +L L  N +  
Sbjct: 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQNQLSG 561

Query: 276 LHAGTFAGLTNLTALFLNNNLL 297
                   + +L  + +++N L
Sbjct: 562 EIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
           NL +L L+NN L  +   AF+ + +LK L L  N L  ++ ++ S LP+L +L L+ N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 46.0 bits (110), Expect = 2e-06
 Identities = 23/114 (20%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
           + ++++ + AF+G   L  + L  + L+ +    F +  +L+++ +  + + ++    F 
Sbjct: 20  SSVTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFS 77

Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
               LT + +  N + ++ +  F +  SL+ + +  +V T+I    FS   SLK
Sbjct: 78  NCSSLTSITIPSN-LTTIGSYAFSN-CSLKSITIPSSV-TTIGDYAFSNCSSLK 128

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 316 LDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPT-CRG 374
           + +NK+  +     + L NL  + L+ NP+ CDC +  + RW      KV   +   C G
Sbjct: 2   ISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAG 61

Query: 375 PGNLGGKSVEDMS-FDDLCEGQWASMVK 401
           PG L G+ +  +   D  C+ ++ + +K
Sbjct: 62  PGALAGQPLLGIPLLDSGCDEEYVACLK 89

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 63/247 (25%), Positives = 85/247 (34%), Gaps = 35/247 (14%)

Query: 119 LTVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK------ 168
           L V++L  N +        A+      SL+EL LS N    I  G  S +  L       
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQ 84

Query: 169 RLKLQSNRINQLPPGIFDDL---KYLDFLSLRNNRLS-----FIRPGLFNYFKHLTFLEL 220
            L L  N +     G+ + L     L  L L NN L       +  GL +    L  L L
Sbjct: 85  ELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144

Query: 221 SENWISSLN----GDEFSQLTSLKELHLGQNYI--ETIP--AGSFANLQSLEKLFLYSNN 272
             N +   +             LKEL+L  N I    I   A       +LE L L +N 
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204

Query: 273 IQELH----AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLH-----LKKLQLDSNKLQY 323
           + +      A T A L +L  L L +N L      A    L      L  L L  N +  
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

Query: 324 LATDSLS 330
                L+
Sbjct: 265 DGAKDLA 271

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 56/240 (23%), Positives = 86/240 (35%), Gaps = 47/240 (19%)

Query: 71  LTELKLRKNHLSELP------GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIR---LTV 121
           L EL L  N    +P       +       L  +DLS N +        +  +R   L  
Sbjct: 53  LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQE 112

Query: 122 VQLSYNAIESLP----ANVFHDLI-SLEELDLSQNVLTSIQY----GTFSGMYSLKRLKL 172
           ++L+ N +        A    DL  +LE+L L +N L                 LK L L
Sbjct: 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172

Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG-- 230
            +N I     GI    + L    L+ N              +L  L+L+ N ++      
Sbjct: 173 ANNGIG--DAGI----RAL-AEGLKAN-------------CNLEVLDLNNNGLTDEGASA 212

Query: 231 --DEFSQLTSLKELHLGQNYIETIPAGSFAN-----LQSLEKLFLYSNNIQELHAGTFAG 283
             +  + L SL+ L+LG N +    A + A+       SL  L L  N+I +  A   A 
Sbjct: 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 213 KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
            +L  L+LS N I+ L     S L +L+ L L  N I  +  
Sbjct: 1   TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 41/245 (16%)

Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
           TEL+L+   L+ +P  +      ++T+ L  N +K+LP         L       N + S
Sbjct: 181 TELRLKILGLTTIPACI---PEQITTLILDNNELKSLPENLQGNIKTLYANS---NQLTS 234

Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
           +PA +     +++E++LS N +T +     S   +L+ L L  N+I+ LP  + ++L+YL
Sbjct: 235 IPATLPD---TIQEMELSINRITELPERLPS---ALQSLDLFHNKISCLPENLPEELRYL 288

Query: 192 DF------------------LSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
                               L++++N L+ +   L      L  LE  EN ++SL     
Sbjct: 289 SVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLPA--- 342

Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
           S    L+ L + +N I  +P      + +   L +  N +  L     A L  + A    
Sbjct: 343 SLPPELQVLDVSKNQITVLPETLPPTITT---LDVSRNALTNLPENLPAALQIMQASR-- 397

Query: 294 NNLLR 298
           NNL+R
Sbjct: 398 NNLVR 402

Length = 754

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 16/83 (19%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
            SL  + +  + + +I   +F+   SL+ + L  +++  + +  F   ++LT++ + ++ 
Sbjct: 11  CSLTSITIPSS-VTSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS- 67

Query: 297 LRYLDTKAFEPMLHLKKLQLDSN 319
           L  +   AF     L  + + SN
Sbjct: 68  LTSIGEYAFSNCSSLTSITIPSN 90

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
           T+L+ L L  N I  +P    +NL +LE L L  N I +L
Sbjct: 1   TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDL 38

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	404
KOG4194|consensus	873		100.0
KOG4237|consensus	498		100.0
KOG4194|consensus	873		100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472|consensus	565		99.95
KOG0444|consensus	1255		99.94
KOG0444|consensus	1255		99.94
KOG4237|consensus	498		99.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.92
KOG0472|consensus	565		99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
KOG0618|consensus	1081		99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
KOG0618|consensus	1081		99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617|consensus	264		99.59
KOG0617|consensus	264		99.57
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.37
KOG1259|consensus	490		99.33
KOG3207|consensus	505		99.28
KOG1259|consensus	490		99.25
KOG0531|consensus	414		99.23
KOG3207|consensus	505		99.2
KOG1909|consensus	382		99.2
KOG0531|consensus	414		99.19
KOG1909|consensus	382		99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
KOG0532|consensus	722		99.13
KOG4658|consensus	889		99.13
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.12
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.1
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.08
KOG4658|consensus	889		99.06
KOG1859|consensus	1096		99.01
KOG0532|consensus	722		98.96
PLN03150	623	hypothetical protein; Provisional	98.89
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.83
PLN03150	623	hypothetical protein; Provisional	98.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.73
KOG1859|consensus	1096		98.65
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	98.58
KOG1644|consensus	233		98.55
KOG4579|consensus	177		98.52
KOG2982|consensus	418		98.51
KOG1644|consensus	233		98.5
KOG2982|consensus	418		98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG2120|consensus	419		98.19
KOG2120|consensus	419		98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.12
KOG4579|consensus	177		98.11
PRK15386	426	type III secretion protein GogB; Provisional	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.86
KOG3665|consensus	699		97.79
KOG3665|consensus	699		97.79
KOG2123|consensus	388		97.75
KOG2739|consensus	260		97.66
KOG4341|consensus	483		97.48
KOG2123|consensus	388		97.36
KOG2739|consensus	260		97.35
KOG4341|consensus	483		97.06
KOG1947|consensus	482		96.41
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	96.13
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	95.99
KOG1947|consensus	482		95.94
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.82
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	95.46
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.01
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.97
smart00370	26	LRR Leucine-rich repeats, outliers.	94.97
KOG3864|consensus	221		94.67
smart00370	26	LRR Leucine-rich repeats, outliers.	94.65
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.65
KOG3864|consensus	221		93.98
KOG4308|consensus	478		91.61
KOG4308|consensus	478		90.75
KOG0473|consensus	326		90.12
KOG0473|consensus	326		87.63
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.13
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.35
KOG3763|consensus	585		83.93
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.68

>KOG4194|consensus

Probab=100.00  E-value=1.6e-50  Score=362.42  Aligned_cols=374  Identities=32%  Similarity=0.489  Sum_probs=299.3

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      ..+.++...+.++.||...-...+++.|++.+|.|+.+....++.++.|+.|||+.|.|++++...|..-.++++|+|++
T Consensus       103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~  182 (873)
T KOG4194|consen  103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS  182 (873)
T ss_pred             cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence            45677777788888888877777899999999999999999999999999999999999999988888878899999999


Q ss_pred             CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCC
Q psy12291        103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP  182 (404)
Q Consensus       103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~  182 (404)
                      |.|+.+..+.|.++.+|..|.|+.|.++.+|...|..+++|+.|+|..|.+..+....|.++++|+.|.+..|.+..+.+
T Consensus       183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D  262 (873)
T KOG4194|consen  183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD  262 (873)
T ss_pred             ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC
Confidence            99999988889999999999999999999998888889999999999988888777788888888888888888888888


Q ss_pred             CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCC
Q psy12291        183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS  262 (404)
Q Consensus       183 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  262 (404)
                      ++|..+.+++.|++..|+++.+..+++.+++.|+.|+++.|.+..+..+.+...++|+.|+++.|+++.++++.|..+..
T Consensus       263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~  342 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ  342 (873)
T ss_pred             cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence            88888888888888888888777777777888888888888777777667777777788888877777777777777777


Q ss_pred             CcEEECcCCCccccccccccCCCCCCeeeccccccccc---CccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEE
Q psy12291        263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL---DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLK  339 (404)
Q Consensus       263 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~  339 (404)
                      |++|.|+.|.+..+...+|.++.+|++|||++|.+...   ...+|..+++|+.|++.+|+++.++..++..+++|++|+
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            77777777777666666666666666666666665432   124555666666666666666666666666666666666


Q ss_pred             ccCCc-----------------------cccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCcc
Q psy12291        340 LAKNP-----------------------WHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQ  395 (404)
Q Consensus       340 l~~Np-----------------------~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~  395 (404)
                      |.+|+                       +.|||++.|+.+|+...... -.....|++|+.+.|+.+.+++..++ |+..
T Consensus       423 L~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq-~sv~a~CayPe~Lad~~i~svd~~~lvC~Ds  501 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ-SSVIAKCAYPEPLADQSIVSVDTANLVCDDS  501 (873)
T ss_pred             CCCCcceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccc-cceeeeccCCcccccceeEeechhhceecCC
Confidence            66664                       48999999999999876543 12368999999999999999999887 9865


Q ss_pred             cc
Q psy12291        396 WA  397 (404)
Q Consensus       396 ~~  397 (404)
                      +-
T Consensus       502 pk  503 (873)
T KOG4194|consen  502 PK  503 (873)
T ss_pred             CC
Confidence            43

>KOG4237|consensus

Probab=100.00  E-value=6.4e-45  Score=312.34  Aligned_cols=370  Identities=29%  Similarity=0.462  Sum_probs=301.2

Q ss_pred             CCCCCCCceecC-CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccc
Q psy12291         11 YRCCEGPCRCRP-EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF   89 (404)
Q Consensus        11 ~~~~~~~c~c~~-~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~   89 (404)
                      ...||..|.|.. +...|+|++++++++|.+  +|.+.+.+++..|.|+.+++.+|..+++|+.|||++|+|+.|.+++|
T Consensus        34 ~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~--LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF  111 (498)
T KOG4237|consen   34 ASACPAPCTCSDVEGGIVDCRGKGLTEVPAN--LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF  111 (498)
T ss_pred             cccCCCCcccCCCCCceEEccCCCcccCccc--CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh
Confidence            348999999985 467899999999999998  99999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEeCCC-CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCc
Q psy12291         90 ISTINLSTMDLSQ-NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK  168 (404)
Q Consensus        90 ~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  168 (404)
                      .+++.|..|.+.+ |+|+.++.+.|.++..++.|.+.-|.+..+..+.|..++++..|.+..|.+..+....|..+..++
T Consensus       112 ~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~  191 (498)
T KOG4237|consen  112 KGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIK  191 (498)
T ss_pred             hhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccc
Confidence            9999988887777 899999999999999999999999999999988999999999999999999998888899888999


Q ss_pred             EEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCC-CCCc-EEECCC
Q psy12291        169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL-TSLK-ELHLGQ  246 (404)
Q Consensus       169 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~-~L~l~~  246 (404)
                      .+.+..|.+..     ..+++.+....-       ..+..++......-..+...++..+....|... ..+. .+.-..
T Consensus       192 tlhlA~np~ic-----dCnL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d  259 (498)
T KOG4237|consen  192 TLHLAQNPFIC-----DCNLPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED  259 (498)
T ss_pred             hHhhhcCcccc-----ccccchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc
Confidence            88887775321     112222211111       111122222223333333444444444333322 1111 122222


Q ss_pred             CCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc
Q psy12291        247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       247 ~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  326 (404)
                      +.....|...|..+++|++|+|++|+|+.|...+|.+...+++|.|..|+|..+...+|.++..|+.|+|.+|+|+.+.+
T Consensus       260 ~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  260 FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             CcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence            23334455668899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCcccc
Q psy12291        327 DSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQWA  397 (404)
Q Consensus       327 ~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~~~  397 (404)
                      ..|..+.+|.+|+|-+|||.|||.+.|+.+|+++..   ..+...|+.|..+++.++.++...+. |+++.+
T Consensus       340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~---~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee  408 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS---VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEE  408 (498)
T ss_pred             ccccccceeeeeehccCcccCccchHHHHHHHhhCC---CCCCCCCCCCchhccccchhccccccccCCccc
Confidence            999999999999999999999999999999999987   23589999999999999999998887 885443

>KOG4194|consensus

Probab=100.00  E-value=1.1e-41  Score=305.82  Aligned_cols=329  Identities=30%  Similarity=0.462  Sum_probs=206.0

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCC---CCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccc
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPF---DQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF   89 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~---~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~   89 (404)
                      .||..|.|..  ..++|++..++.+..   .+++|...+.||+++|.+..+....|.++++|+++++..|.++.||... 
T Consensus        45 ~cpa~c~c~~--~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-  121 (873)
T KOG4194|consen   45 ECPATCPCNT--RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-  121 (873)
T ss_pred             cCCCcCCCCc--eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-
Confidence            5788898874  679999999998621   2348889999999999999999999999999999999999999888643 


Q ss_pred             cCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcE
Q psy12291         90 ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR  169 (404)
Q Consensus        90 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  169 (404)
                      ....+|+.|+|.+|.|+++....++.++.|+.|+|+.|.++.++...|..-.++++|+|++|.|+.+....|.++.+|..
T Consensus       122 ~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t  201 (873)
T KOG4194|consen  122 HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT  201 (873)
T ss_pred             ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence            34455777777777777766666666666777777777666666666665566666777666666666666666666666


Q ss_pred             EeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCC
Q psy12291        170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI  249 (404)
Q Consensus       170 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  249 (404)
                      |.++.|+++.+|...|.++++|+.|++..|++..+....|.++++|+.|.+..|.+......+|..+.++++|++..|++
T Consensus       202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence            66666666666666666666666666666655544334444555555555555544444444444444444444444444


Q ss_pred             cccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccc
Q psy12291        250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL  329 (404)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  329 (404)
                      ..+..+++..+++|+.|++++|.|..+..+....+++|++|+|++|+|+.++++.|..+..|++|.|++|++..+....|
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cCCCCCcEEEccCCc
Q psy12291        330 SLLPNLITLKLAKNP  344 (404)
Q Consensus       330 ~~l~~L~~l~l~~Np  344 (404)
                      ..+++|+.|||+.|.
T Consensus       362 ~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNE  376 (873)
T ss_pred             HHhhhhhhhcCcCCe
Confidence            444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.4e-33  Score=287.43  Aligned_cols=323  Identities=26%  Similarity=0.240  Sum_probs=183.3

Q ss_pred             CCCceEEecCCCCCccCC-CCCCCCCeeEEEcCCCCCc-ccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEe
Q psy12291         22 PEIHTLSCWKQDMEELPF-DQIIPVDIRVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMD   99 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~-~~~~~~~l~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~   99 (404)
                      +....++..++++..... .....+.++.|++++|++. .++...+.++++|++|++++|.+.+..+.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            346677777776654332 2222356888888888876 34444455777788888877776632221  3456677777


Q ss_pred             CCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291        100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ  179 (404)
Q Consensus       100 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  179 (404)
                      +++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|+.|++++|.+..
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  226 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG  226 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence            77776654333346666677777777666654444445566666666666666655555556666666666666666654


Q ss_pred             CCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccC
Q psy12291        180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN  259 (404)
Q Consensus       180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~  259 (404)
                      ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..
T Consensus       227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            44444556666666666666655544555555556666666655555444445555555555555555554433334445


Q ss_pred             CCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCC--------------------
Q psy12291        260 LQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSN--------------------  319 (404)
Q Consensus       260 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n--------------------  319 (404)
                      +++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|                    
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence            555555555555555444444444555555555555544433334444444444444444                    


Q ss_pred             ----CCcccCcccccCCCCCcEEEccCCccc
Q psy12291        320 ----KLQYLATDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       320 ----~l~~~~~~~~~~l~~L~~l~l~~Np~~  346 (404)
                          .+.+..+..+..+++|+.|++++|++.
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence                444444444555566666666666553

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.1e-32  Score=282.33  Aligned_cols=321  Identities=22%  Similarity=0.193  Sum_probs=212.4

Q ss_pred             CCceEEecCCCCCc-cCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         23 EIHTLSCWKQDMEE-LPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        23 ~~~~~~~~~~~l~~-ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      ..+.++..++++.. +|..  ...++++|++++|.+....+..+.++++|++|++++|.+....+..|.++++|++|+++
T Consensus       119 ~L~~L~Ls~n~l~~~~p~~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCEEECcCCccccccCcc--ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence            46678888887764 4432  34579999999998887777778889999999999998876555567888889999998


Q ss_pred             CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC
Q psy12291        102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP  181 (404)
Q Consensus       102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~  181 (404)
                      +|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..+.++++|+.|++++|.+.+..
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  276 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI  276 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence            88877554445778888888888888877555555677788888888888777666667777777777777777776554


Q ss_pred             CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCC
Q psy12291        182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ  261 (404)
Q Consensus       182 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  261 (404)
                      +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..++
T Consensus       277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~  356 (968)
T PLN00113        277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN  356 (968)
T ss_pred             chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence            45556667777777777766655555566666666666666666655555566666666666666665533333445555


Q ss_pred             CCcEEECcCCCccc------------------------cccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCC
Q psy12291        262 SLEKLFLYSNNIQE------------------------LHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD  317 (404)
Q Consensus       262 ~L~~L~L~~n~l~~------------------------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  317 (404)
                      +|+.|++++|.+..                        ..+..+..+++|+.|++++|+++...+..+..++.|+.|+++
T Consensus       357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  436 (968)
T PLN00113        357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS  436 (968)
T ss_pred             CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence            55555555555443                        323334445555555555555554444455555556666666


Q ss_pred             CCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        318 SNKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       318 ~n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      +|.+.+..+..+..+++|+.|++++|.+
T Consensus       437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        437 NNNLQGRINSRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             CCcccCccChhhccCCCCcEEECcCcee
Confidence            6655554444444455555555555443

>KOG0472|consensus

Probab=99.95  E-value=1.3e-30  Score=225.10  Aligned_cols=311  Identities=31%  Similarity=0.429  Sum_probs=223.9

Q ss_pred             eEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCC
Q psy12291         26 TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI  105 (404)
Q Consensus        26 ~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l  105 (404)
                      .++-..+++..+|.+.+....+..+++.+|+++..+++.+. |+.|++|+.-.|-++.+|+.. +.+.+|.-|++.+|++
T Consensus       141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~l-g~l~~L~~LyL~~Nki  218 (565)
T KOG0472|consen  141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPEL-GGLESLELLYLRRNKI  218 (565)
T ss_pred             hhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhh-cchhhhHHHHhhhccc
Confidence            34445667777777766666788888888888888877666 889999999999999998875 8889999999999999


Q ss_pred             cccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCcc
Q psy12291        106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF  185 (404)
Q Consensus       106 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~  185 (404)
                      ..+|.  |.++..|+++++..|.+..++......++++..||++.|++.+.+.+ +--+.+|+.||+++|.++.+|.. +
T Consensus       219 ~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~Lp~s-L  294 (565)
T KOG0472|consen  219 RFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSLPYS-L  294 (565)
T ss_pred             ccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccCCcc-c
Confidence            99995  88999999999999999999988888899999999999999988754 44577899999999999998865 5


Q ss_pred             CCCCCCCeEecCCCcCcccC--------------------------------------CCcc---CCCCCCCEEECCCCc
Q psy12291        186 DDLKYLDFLSLRNNRLSFIR--------------------------------------PGLF---NYFKHLTFLELSENW  224 (404)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~--------------------------------------~~~~---~~l~~L~~L~l~~~~  224 (404)
                      +++ +|+.|.+.||.+..+.                                      +..+   ....+.+.|++++-+
T Consensus       295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q  373 (565)
T KOG0472|consen  295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ  373 (565)
T ss_pred             ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence            888 8999999998643110                                      0000   112234445555555


Q ss_pred             CCCCChhhh-------------------------------------------------cCCCCCcEEECCCCCCcccCcc
Q psy12291        225 ISSLNGDEF-------------------------------------------------SQLTSLKELHLGQNYIETIPAG  255 (404)
Q Consensus       225 ~~~~~~~~~-------------------------------------------------~~l~~L~~L~l~~~~l~~~~~~  255 (404)
                      ++.+|...|                                                 +.+++|..|++++|.+.++|.+
T Consensus       374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e  453 (565)
T KOG0472|consen  374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE  453 (565)
T ss_pred             cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh
Confidence            544443333                                                 3334444444444444444442


Q ss_pred             cccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCC
Q psy12291        256 SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL  335 (404)
Q Consensus       256 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  335 (404)
                       +..+-.|+.|+++.|.+..++. ....+..++.+-.++|++..+++..+.++.+|..||+.+|.+..+|+ .++++.+|
T Consensus       454 -~~~lv~Lq~LnlS~NrFr~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp-~LgnmtnL  530 (565)
T KOG0472|consen  454 -MGSLVRLQTLNLSFNRFRMLPE-CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP-ILGNMTNL  530 (565)
T ss_pred             -hhhhhhhheecccccccccchH-HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh-hhccccce
Confidence             2333344555555554444432 12222334444444566677777778889999999999999999987 58999999


Q ss_pred             cEEEccCCccc
Q psy12291        336 ITLKLAKNPWH  346 (404)
Q Consensus       336 ~~l~l~~Np~~  346 (404)
                      ++|++.||||.
T Consensus       531 ~hLeL~gNpfr  541 (565)
T KOG0472|consen  531 RHLELDGNPFR  541 (565)
T ss_pred             eEEEecCCccC
Confidence            99999999995

>KOG0444|consensus

Probab=99.94  E-value=6.2e-30  Score=232.47  Aligned_cols=321  Identities=28%  Similarity=0.433  Sum_probs=211.7

Q ss_pred             CCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc--ccCcccccCC
Q psy12291         15 EGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--ELPGKLFIST   92 (404)
Q Consensus        15 ~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~   92 (404)
                      |..-+.-...+.+.....++..+|........+++|.+++|++..+. +.+..++.|+.++++.|++.  +||+++| .+
T Consensus        25 P~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l  102 (1255)
T KOG0444|consen   25 PHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIF-RL  102 (1255)
T ss_pred             chhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhc-cc
Confidence            33333334466777788888888877666667888888888876663 34677777777777777765  6777664 57


Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEec
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL  172 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  172 (404)
                      ..|+.||||+|+++++|.. +....++-+|+|++|+|..||...|.++..|-.|++++|.+..+++. ...+..|+.|.+
T Consensus       103 ~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKL  180 (1255)
T ss_pred             ccceeeecchhhhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhc
Confidence            7777788888877777765 56667777777777777777777777777777777777777666543 344556666666


Q ss_pred             cCCCCCCCCCCc-------------------------cCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCC
Q psy12291        173 QSNRINQLPPGI-------------------------FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS  227 (404)
Q Consensus       173 ~~~~l~~~~~~~-------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  227 (404)
                      ++|.+....-..                         +..+.+|..++++.|.+..+ |+-+..+++|+.|++++|.++.
T Consensus       181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhhhhhhheeccCcCceee
Confidence            666544332222                         23444455555555554433 2334445555666666665554


Q ss_pred             CChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcc--ccccccccCCCCCCeeecccccccccCcccc
Q psy12291        228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ--ELHAGTFAGLTNLTALFLNNNLLRYLDTKAF  305 (404)
Q Consensus       228 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  305 (404)
                      ... ......+|++|+++.|+++.+|. .+..+++|+.|.+.+|+++  +++ .-++.+..|+++..++|.+.-+ ++.+
T Consensus       260 L~~-~~~~W~~lEtLNlSrNQLt~LP~-avcKL~kL~kLy~n~NkL~FeGiP-SGIGKL~~Levf~aanN~LElV-PEgl  335 (1255)
T KOG0444|consen  260 LNM-TEGEWENLETLNLSRNQLTVLPD-AVCKLTKLTKLYANNNKLTFEGIP-SGIGKLIQLEVFHAANNKLELV-PEGL  335 (1255)
T ss_pred             eec-cHHHHhhhhhhccccchhccchH-HHhhhHHHHHHHhccCcccccCCc-cchhhhhhhHHHHhhccccccC-chhh
Confidence            431 22334456666666666666655 4566667777777666554  343 3356667777777777777655 5667


Q ss_pred             CCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        306 EPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       306 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      ..|..|+.|.|+.|++.++|. .+.-++.|..||+..||-
T Consensus       336 cRC~kL~kL~L~~NrLiTLPe-aIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLITLPE-AIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhhHHHHHhcccccceeechh-hhhhcCCcceeeccCCcC
Confidence            788889999999999888865 577788999999999974

>KOG0444|consensus

Probab=99.94  E-value=4.9e-30  Score=233.14  Aligned_cols=289  Identities=26%  Similarity=0.377  Sum_probs=199.3

Q ss_pred             CceEEecCCCCC--ccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         24 IHTLSCWKQDME--ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        24 ~~~~~~~~~~l~--~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      .++++.+++...  ..|.+...-..++-|.+....+..++ ..++.+.+|++|.++.|++.++... ++.++.|+.+++.
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vP-eEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVP-EELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVR   86 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhCh-HHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhh
Confidence            566777777665  34544444456888889888887774 5689999999999999999988765 4889999999999


Q ss_pred             CCCCc--ccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291        102 QNLIK--TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ  179 (404)
Q Consensus       102 ~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  179 (404)
                      +|+++  .||+..| .+.-|..|+|++|++..+|... ...+++-.|++++|+|..++...|.+++.|-.|++++|.+..
T Consensus        87 ~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~  164 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM  164 (1255)
T ss_pred             ccccccCCCCchhc-ccccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh
Confidence            99876  6888865 6899999999999999998764 667899999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCC-CChhhhcCCCCCcEEECCCCCCcccCccccc
Q psy12291        180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS-LNGDEFSQLTSLKELHLGQNYIETIPAGSFA  258 (404)
Q Consensus       180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  258 (404)
                      +|+.. ..+..|++|.+++|.+.-.....+..+++|++|.+++.+-+- -.|..+..+.+|..++++.|.+..+|. .+.
T Consensus       165 LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe-cly  242 (1255)
T KOG0444|consen  165 LPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE-CLY  242 (1255)
T ss_pred             cCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH-HHh
Confidence            99985 888999999999997654333333344455555555442221 112334444555555555555555444 344


Q ss_pred             CCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCC
Q psy12291        259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK  320 (404)
Q Consensus       259 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  320 (404)
                      .+++|+.|+|++|+|+.+.. ..+...+|++|+++.|+++.+ +.++..++.|+.|.+.+|+
T Consensus       243 ~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             hhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCc
Confidence            45555555555555554432 122234445555555555444 2233344444444444443

>KOG4237|consensus

Probab=99.93  E-value=8.2e-28  Score=207.34  Aligned_cols=131  Identities=27%  Similarity=0.392  Sum_probs=119.0

Q ss_pred             CCCceEEecCCCCCccCCCCCCC-CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccC-CcCcccCcccccCCCCCCEEe
Q psy12291         22 PEIHTLSCWKQDMEELPFDQIIP-VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRK-NHLSELPGKLFISTINLSTMD   99 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~~~-~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~   99 (404)
                      ++...++...++|+.||...+-+ ..++.||+++|+|+.|.+++|.+++.|.+|.+.+ |+|++++.++|.++..|+-|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            45668999999999999986653 5799999999999999999999999998888776 899999999999999999999


Q ss_pred             CCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCc
Q psy12291        100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV  152 (404)
Q Consensus       100 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~  152 (404)
                      +.-|++.-++..+|..++++..|.+.+|.+..+....|..+..++.+.+..|+
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            99999999999999999999999999999999998888888888888887766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.92  E-value=1e-23  Score=205.12  Aligned_cols=260  Identities=24%  Similarity=0.260  Sum_probs=190.7

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN  103 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  103 (404)
                      ...++|.+++++.+|..  ++.+++.|++.+|+++.++.    ..++|++|++++|+++.+|..    .++|++|++++|
T Consensus       203 ~~~LdLs~~~LtsLP~~--l~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N  272 (788)
T PRK15387        203 NAVLNVGESGLTTLPDC--LPAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN  272 (788)
T ss_pred             CcEEEcCCCCCCcCCcc--hhcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc----ccccceeeccCC
Confidence            56799999999999975  66789999999999988753    257899999999999988752    468899999999


Q ss_pred             CCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCC
Q psy12291        104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPG  183 (404)
Q Consensus       104 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  183 (404)
                      .++.+|..    +.+|+.|++++|.++.++.    .+++|+.|++++|.+..++.  +  ..+|+.|++++|.++.+|..
T Consensus       273 ~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~--l--p~~L~~L~Ls~N~L~~LP~l  340 (788)
T PRK15387        273 PLTHLPAL----PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA--L--PSELCKLWAYNNQLTSLPTL  340 (788)
T ss_pred             chhhhhhc----hhhcCEEECcCCccccccc----cccccceeECCCCccccCCC--C--cccccccccccCcccccccc
Confidence            98888752    3578889999999888765    24678999999998887653  1  23677888888888877641


Q ss_pred             ccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCC
Q psy12291        184 IFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL  263 (404)
Q Consensus       184 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  263 (404)
                          ..+|+.|++++|+++.++.    ..++|+.|++++|.+..++.    ...+|+.|++++|.+..+|..    .++|
T Consensus       341 ----p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N~Lt~LP~l----~s~L  404 (788)
T PRK15387        341 ----PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLPVL----PSEL  404 (788)
T ss_pred             ----ccccceEecCCCccCCCCC----CCcccceehhhccccccCcc----cccccceEEecCCcccCCCCc----ccCC
Confidence                2478888888888876643    13567777788877776552    124677788888877766641    2567


Q ss_pred             cEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc
Q psy12291        264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       264 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  326 (404)
                      +.|++++|.++.++..    ..+|+.|++++|+++.++ ..+..+++|+.|+|++|++++...
T Consensus       405 ~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP-~sl~~L~~L~~LdLs~N~Ls~~~~  462 (788)
T PRK15387        405 KELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSERTL  462 (788)
T ss_pred             CEEEccCCcCCCCCcc----hhhhhhhhhccCcccccC-hHHhhccCCCeEECCCCCCCchHH
Confidence            7777777777776531    246677777777777664 345567777777777777765443

>KOG0472|consensus

Probab=99.91  E-value=1.4e-27  Score=206.34  Aligned_cols=293  Identities=29%  Similarity=0.445  Sum_probs=238.2

Q ss_pred             ceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCC
Q psy12291         25 HTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL  104 (404)
Q Consensus        25 ~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~  104 (404)
                      ..++..++.++.+|.+...-..+++||...|-+..++++ ++++.+|..|+++.|+|..+|.  |.++..|..|+++.|.
T Consensus       163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPE-LGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQ  239 (565)
T ss_pred             HHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChh-hcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccH
Confidence            345667888888887755555799999999999988765 8999999999999999999994  7999999999999999


Q ss_pred             CcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCC----
Q psy12291        105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL----  180 (404)
Q Consensus       105 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~----  180 (404)
                      ++.+|+....+++++.+|++.+|+++.+|... .-+.+|..||+++|.++..+ ..++++ .|+.|-+.+|.+..+    
T Consensus       240 i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGNPlrTiRr~i  316 (565)
T KOG0472|consen  240 IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGNPLRTIRREI  316 (565)
T ss_pred             HHhhHHHHhcccccceeeeccccccccCchHH-HHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCCchHHHHHHH
Confidence            99999998889999999999999999999875 46789999999999999886 567887 888888888744211    


Q ss_pred             -------------------------------------------------------------CCCccCCC--CCCCeEecC
Q psy12291        181 -------------------------------------------------------------PPGIFDDL--KYLDFLSLR  197 (404)
Q Consensus       181 -------------------------------------------------------------~~~~~~~l--~~L~~L~l~  197 (404)
                                                                                   |.+.|..-  .-...++++
T Consensus       317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs  396 (565)
T KOG0472|consen  317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS  396 (565)
T ss_pred             HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence                                                                         11111000  013344555


Q ss_pred             CCcCc-----------------------ccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc
Q psy12291        198 NNRLS-----------------------FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA  254 (404)
Q Consensus       198 ~~~~~-----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  254 (404)
                      .|++.                       +..+..+..+++|..|++++|.+..+| ..++.+..|+.|+++.|+|..+|.
T Consensus       397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP-~e~~~lv~Lq~LnlS~NrFr~lP~  475 (565)
T KOG0472|consen  397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLP-EEMGSLVRLQTLNLSFNRFRMLPE  475 (565)
T ss_pred             cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcc-hhhhhhhhhheecccccccccchH
Confidence            55432                       223344566789999999999998887 456788889999999999999987


Q ss_pred             ccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcc
Q psy12291        255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATD  327 (404)
Q Consensus       255 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  327 (404)
                       .+..+..++.+-.++|++..+++.-+.++.+|..||+.+|.+..+++ .+++|.+|++|++.+|.+. .|..
T Consensus       476 -~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  476 -CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP-ILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             -HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh-hhccccceeEEEecCCccC-CCHH
Confidence             56667788888888999999999888999999999999999999966 5789999999999999998 5543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=3.4e-23  Score=201.43  Aligned_cols=258  Identities=27%  Similarity=0.290  Sum_probs=212.5

Q ss_pred             CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS  125 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  125 (404)
                      +-..|+++.+.++.++. .+.  ++|+.|++.+|+++.+|..    +++|++|++++|+++.+|..    .++|+.|+++
T Consensus       202 ~~~~LdLs~~~LtsLP~-~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL----PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCCcCCc-chh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc----ccccceeecc
Confidence            45679999999998765 343  4799999999999998852    57899999999999999852    4689999999


Q ss_pred             CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccC
Q psy12291        126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR  205 (404)
Q Consensus       126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~  205 (404)
                      +|.++.++..    +.+|+.|++++|.+..++.    ..++|+.|++++|.+..++..    ..+|+.|.+++|.++.++
T Consensus       271 ~N~L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        271 SNPLTHLPAL----PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             CCchhhhhhc----hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC----cccccccccccCcccccc
Confidence            9999887752    3578999999999987753    246899999999999988752    246889999999998765


Q ss_pred             CCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCC
Q psy12291        206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT  285 (404)
Q Consensus       206 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  285 (404)
                      .    ...+|+.|++++|.+..++.    ..++|+.|++++|.+..++..    ..+|+.|++++|.++.++..    .+
T Consensus       339 ~----lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l----~s  402 (788)
T PRK15387        339 T----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPVL----PS  402 (788)
T ss_pred             c----cccccceEecCCCccCCCCC----CCcccceehhhccccccCccc----ccccceEEecCCcccCCCCc----cc
Confidence            3    23589999999999998764    235789999999999988752    36899999999999987642    36


Q ss_pred             CCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcccc
Q psy12291        286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       286 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      +|+.|++++|+++.++..    ..+|+.|++++|+++.+|. .+..+++|+.|+|++||+..
T Consensus       403 ~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~-sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        403 ELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccCh-HHhhccCCCeEECCCCCCCc
Confidence            899999999999988642    3578999999999999865 47789999999999999964

>KOG0618|consensus

Probab=99.88  E-value=6.8e-25  Score=207.91  Aligned_cols=288  Identities=29%  Similarity=0.371  Sum_probs=189.8

Q ss_pred             EEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcc------------------cccCCCCCCEEeCCCCCCcccCc
Q psy12291         49 VIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGK------------------LFISTINLSTMDLSQNLIKTLPS  110 (404)
Q Consensus        49 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~------------------~~~~~~~L~~L~l~~n~l~~~~~  110 (404)
                      +||++.|.+...   .+..+.+|+.|....|++..+...                  .-....+|+++++++|.+..+| 
T Consensus       182 ~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-  257 (1081)
T KOG0618|consen  182 QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-  257 (1081)
T ss_pred             eeecccchhhhh---hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-
Confidence            477777776622   234445555555555544433210                  0012334555555555555555 


Q ss_pred             cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCC
Q psy12291        111 TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY  190 (404)
Q Consensus       111 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  190 (404)
                      .+...+.+|+.++..+|.++.++...+ ...+|+.|.+.+|.+..+++ ...+...|++|++..|.+...|+..|..+..
T Consensus       258 ~wi~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~  335 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNA  335 (1081)
T ss_pred             HHHHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhccccccchHHHhhhhH
Confidence            345555555555555555555554432 23455555555555555442 2334555666666666655555543333322


Q ss_pred             -CCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECc
Q psy12291        191 -LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY  269 (404)
Q Consensus       191 -L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~  269 (404)
                       ++.|+.+.+++...+...-...+.|+.|.+.+|.+++.....+.+..+|+.|++++|++..+|...+.+++.|+.|+|+
T Consensus       336 ~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS  415 (1081)
T KOG0618|consen  336 SLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS  415 (1081)
T ss_pred             HHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence             4444444444443332222334567888899999988777788899999999999999999999889999999999999


Q ss_pred             CCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        270 SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       270 ~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      ||+++.++ .....++.|++|...+|++..++  .+..++.|+.+|++.|+++.+........++|++||++||++
T Consensus       416 GNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  416 GNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             cchhhhhh-HHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            99999997 66788999999999999999987  466789999999999999886543333448999999999996

>PLN03210 Resistant to P

Probab=99.87  E-value=2.2e-20  Score=194.75  Aligned_cols=302  Identities=25%  Similarity=0.286  Sum_probs=215.6

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCC-cCcccCcccccCCCCCCEEeCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN-HLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      ..+.+...+..++.+|... .+.+++.|+++++.+..+. ..+..+++|+.|+++++ .+..+|.  +..+++|++|+++
T Consensus       590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~  665 (1153)
T PLN03210        590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLS  665 (1153)
T ss_pred             ccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccc-cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEec
Confidence            4566777777788888653 5678888888888887664 34677888888888876 4566664  5678888888888


Q ss_pred             CC-CCcccCccccCCCCCCcEEEccCC-CCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291        102 QN-LIKTLPSTFFKGAIRLTVVQLSYN-AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ  179 (404)
Q Consensus       102 ~n-~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  179 (404)
                      +| .+..+|.. +..+++|+.|++++| .++.+|...  ++++|+.|++++|......+.   ...+|+.|++++|.+..
T Consensus       666 ~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~  739 (1153)
T PLN03210        666 DCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE  739 (1153)
T ss_pred             CCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc
Confidence            87 45666654 777888888888875 466666543  577888888888753322211   23578888888888887


Q ss_pred             CCCCccCCCCCCCeEecCCCcCcc-------cCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCC-CCcc
Q psy12291        180 LPPGIFDDLKYLDFLSLRNNRLSF-------IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN-YIET  251 (404)
Q Consensus       180 ~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~  251 (404)
                      +|...  .+++|++|.+.++....       ..+..+...++|+.|++++|......+..+.++++|+.|++++| .+..
T Consensus       740 lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~  817 (1153)
T PLN03210        740 FPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET  817 (1153)
T ss_pred             ccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence            77542  56778888777643221       11222334568999999998665555567889999999999987 5667


Q ss_pred             cCcccccCCCCCcEEECcCCC-ccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCC-CCCcccCcccc
Q psy12291        252 IPAGSFANLQSLEKLFLYSNN-IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS-NKLQYLATDSL  329 (404)
Q Consensus       252 ~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~  329 (404)
                      +|...  .+++|+.|++++|. +..++.    ..++|++|+|++|.++.++ ..+..+++|+.|++++ ++++.++. .+
T Consensus       818 LP~~~--~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~l~~-~~  889 (1153)
T PLN03210        818 LPTGI--NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQRVSL-NI  889 (1153)
T ss_pred             eCCCC--CccccCEEECCCCCccccccc----cccccCEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCccCc-cc
Confidence            76532  68899999999874 433322    2368999999999998874 4577889999999998 46777755 35


Q ss_pred             cCCCCCcEEEccCCc
Q psy12291        330 SLLPNLITLKLAKNP  344 (404)
Q Consensus       330 ~~l~~L~~l~l~~Np  344 (404)
                      ..+++|+.+++++++
T Consensus       890 ~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        890 SKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccCCCeeecCCCc
Confidence            667778888877664

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=2.6e-21  Score=189.41  Aligned_cols=249  Identities=24%  Similarity=0.329  Sum_probs=201.3

Q ss_pred             CCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEEC
Q psy12291         69 YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL  148 (404)
Q Consensus        69 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  148 (404)
                      .+...|++++++++.+|...   .++|+.|++++|.++.+|...+   .+|+.|++++|.++.++...   ..+|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh---hccccEEEC
Confidence            45789999999999998754   4679999999999999987643   58999999999999887643   247999999


Q ss_pred             CCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCC
Q psy12291        149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL  228 (404)
Q Consensus       149 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  228 (404)
                      ++|.+..++.. +.  .+|+.|++++|.++.+|....   ++|+.|++++|+++.++.. +  .++|+.|++++|.+..+
T Consensus       249 s~N~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        249 SINRITELPER-LP--SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             cCCccCcCChh-Hh--CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccC
Confidence            99999877543 32  479999999999998876432   5899999999999876542 2  25789999999999877


Q ss_pred             ChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCC
Q psy12291        229 NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM  308 (404)
Q Consensus       229 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  308 (404)
                      +...   .++|+.|++++|.++.++.. +  .++|+.|++++|+++.++.. +  .++|++|+|++|+++.++....   
T Consensus       320 P~~l---~~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~~l~---  387 (754)
T PRK15370        320 PETL---PPGLKTLEAGENALTSLPAS-L--PPELQVLDVSKNQITVLPET-L--PPTITTLDVSRNALTNLPENLP---  387 (754)
T ss_pred             Cccc---cccceeccccCCccccCChh-h--cCcccEEECCCCCCCcCChh-h--cCCcCEEECCCCcCCCCCHhHH---
Confidence            6422   36899999999999998863 3  37999999999999987653 2  3689999999999998876533   


Q ss_pred             CCCcEEeCCCCCCcccCcc---cccCCCCCcEEEccCCcccc
Q psy12291        309 LHLKKLQLDSNKLQYLATD---SLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       309 ~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~l~l~~Np~~C  347 (404)
                      ..|+.|++++|++..++..   ....++.+..+++.+||+..
T Consensus       388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            3799999999999988653   23345888999999999973

>KOG0618|consensus

Probab=99.86  E-value=7.7e-24  Score=200.83  Aligned_cols=309  Identities=28%  Similarity=0.370  Sum_probs=222.3

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN  103 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  103 (404)
                      .+.+.|..+.+..+...   -..+++|+.++|.+..+...  .--.+|++++++.+++..+| .....+.+|+.++..+|
T Consensus       201 l~~l~c~rn~ls~l~~~---g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N  274 (1081)
T KOG0618|consen  201 LEVLHCERNQLSELEIS---GPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN  274 (1081)
T ss_pred             hhhhhhhhcccceEEec---CcchheeeeccCcceeeccc--cccccceeeecchhhhhcch-HHHHhcccceEecccch
Confidence            45666766666665542   23678888888877744322  22357888888888888888 44577888888888888


Q ss_pred             CCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCcc-CcEEeccCCCCCCCCC
Q psy12291        104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS-LKRLKLQSNRINQLPP  182 (404)
Q Consensus       104 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~  182 (404)
                      .+..+|.. +....+|+.|.+.+|.+..+++.. .+++.|++|++..|.+..++...+..... |+.|..+.+.+...+.
T Consensus       275 ~l~~lp~r-i~~~~~L~~l~~~~nel~yip~~l-e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~  352 (1081)
T KOG0618|consen  275 RLVALPLR-ISRITSLVSLSAAYNELEYIPPFL-EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS  352 (1081)
T ss_pred             hHHhhHHH-HhhhhhHHHHHhhhhhhhhCCCcc-cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence            88777766 445678888888888888877643 45778888888888887777655544433 6677777777766654


Q ss_pred             CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCC
Q psy12291        183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS  262 (404)
Q Consensus       183 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  262 (404)
                      ..=...+.|+.|.+.+|.++.-.-..+.+.++|+.|++++|++..++...+.++..|++|+++||.++.++. .+..++.
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-tva~~~~  431 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-TVANLGR  431 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-HHHhhhh
Confidence            322345667888888888876555667778888888888888888887778888888888888888888874 6677888


Q ss_pred             CcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccC
Q psy12291        263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAK  342 (404)
Q Consensus       263 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  342 (404)
                      |++|..-+|.+..++  -+..++.|+.+|++.|+++.+....-..-++|++||+++|.-..++...+..+.++...++.-
T Consensus       432 L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~  509 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITL  509 (1081)
T ss_pred             hHHHhhcCCceeech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheeccc
Confidence            888888888888776  366778888888888888776543322337888888888876666666677777776666655


Q ss_pred             C
Q psy12291        343 N  343 (404)
Q Consensus       343 N  343 (404)
                      |
T Consensus       510 ~  510 (1081)
T KOG0618|consen  510 N  510 (1081)
T ss_pred             C
Confidence            5

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=9.2e-21  Score=185.62  Aligned_cols=246  Identities=23%  Similarity=0.299  Sum_probs=179.6

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN  103 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  103 (404)
                      ...+++.+.+++.+|..  +|..++.|++++|.++.++...+   .+|++|++++|+++.+|...   ..+|+.|++++|
T Consensus       180 ~~~L~L~~~~LtsLP~~--Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N  251 (754)
T PRK15370        180 KTELRLKILGLTTIPAC--IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMELSIN  251 (754)
T ss_pred             ceEEEeCCCCcCcCCcc--cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh---hccccEEECcCC
Confidence            56788888889998875  67789999999999988765433   47899999999998887653   347899999999


Q ss_pred             CCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCC
Q psy12291        104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPG  183 (404)
Q Consensus       104 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  183 (404)
                      .+..+|....   .+|+.|++++|.++.++....   ++|+.|++++|.+..++.. +.  ++|+.|++++|.++.++..
T Consensus       252 ~L~~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        252 RITELPERLP---SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAH-LP--SGITHLNVQSNSLTALPET  322 (754)
T ss_pred             ccCcCChhHh---CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCccc-ch--hhHHHHHhcCCccccCCcc
Confidence            9888887532   478999999998888776432   4788999999888776532 22  3688888888888877654


Q ss_pred             ccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCC
Q psy12291        184 IFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL  263 (404)
Q Consensus       184 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  263 (404)
                      .   .++|+.|++++|.++.++.. +  .++|+.|++++|.+..++. .+  .++|+.|++++|.+..+|... .  ..|
T Consensus       323 l---~~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~~l-~--~sL  390 (754)
T PRK15370        323 L---PPGLKTLEAGENALTSLPAS-L--PPELQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPENL-P--AAL  390 (754)
T ss_pred             c---cccceeccccCCccccCChh-h--cCcccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCHhH-H--HHH
Confidence            3   25788888888887766432 2  2578888888887776653 22  257888888888887777632 2  357


Q ss_pred             cEEECcCCCccccccc---cccCCCCCCeeeccccccc
Q psy12291        264 EKLFLYSNNIQELHAG---TFAGLTNLTALFLNNNLLR  298 (404)
Q Consensus       264 ~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~i~  298 (404)
                      +.|++++|++..++..   .+..++.+..|++.+|.+.
T Consensus       391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            7788888877766432   2334567777788777765

>PLN03210 Resistant to P

Probab=99.84  E-value=5.4e-19  Score=184.49  Aligned_cols=281  Identities=23%  Similarity=0.282  Sum_probs=193.3

Q ss_pred             CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC-CCcccCccccCCCCCCcE
Q psy12291         43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-LIKTLPSTFFKGAIRLTV  121 (404)
Q Consensus        43 ~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~  121 (404)
                      +|..++.|++.++.++.++.. | ...+|+.|+++++++..++.. +..+++|++|+++++ .++.+|.  +..+++|+.
T Consensus       587 lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~  661 (1153)
T PLN03210        587 LPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLET  661 (1153)
T ss_pred             cCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCc--cccCCcccE
Confidence            355688888888777766543 3 457788888888888777655 367788888888876 4666664  667788888


Q ss_pred             EEccCCC-CCcCCCccCCCCCCCCEEECCCCc-ccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCC
Q psy12291        122 VQLSYNA-IESLPANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN  199 (404)
Q Consensus       122 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  199 (404)
                      |++++|. +..++. .+..+++|+.|++++|. +..++. .+ ++++|+.|++++|......+.   ...+|+.|+++++
T Consensus       662 L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~-~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n  735 (1153)
T PLN03210        662 LKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPT-GI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDET  735 (1153)
T ss_pred             EEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCC-cC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCC
Confidence            8887764 444443 35677788888888763 444432 22 567788888887753322221   2356788888888


Q ss_pred             cCcccCCCccCCCCCCCEEECCCCcCCC-------CChhhhcCCCCCcEEECCCCC-CcccCcccccCCCCCcEEECcCC
Q psy12291        200 RLSFIRPGLFNYFKHLTFLELSENWISS-------LNGDEFSQLTSLKELHLGQNY-IETIPAGSFANLQSLEKLFLYSN  271 (404)
Q Consensus       200 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~n  271 (404)
                      .+..++.. + .+++|+.|.+.++....       ..+..+...++|+.|++++|. +..+|. .+..+++|+.|++++|
T Consensus       736 ~i~~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        736 AIEEFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENC  812 (1153)
T ss_pred             cccccccc-c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCC
Confidence            77665432 2 46777777776643211       111222345689999999985 445555 6889999999999987


Q ss_pred             -CccccccccccCCCCCCeeeccccc-ccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCc
Q psy12291        272 -NIQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP  344 (404)
Q Consensus       272 -~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np  344 (404)
                       .+..++...  .+++|+.|++++|. +..++.    ...+|+.|+|++|.++.+|. .+..+++|+.|++.+|+
T Consensus       813 ~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~-si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        813 INLETLPTGI--NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPW-WIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             CCcCeeCCCC--CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChH-HHhcCCCCCEEECCCCC
Confidence             567665532  68999999999974 333322    23689999999999998865 57889999999999853

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.75  E-value=8.9e-20  Score=165.89  Aligned_cols=276  Identities=25%  Similarity=0.234  Sum_probs=147.0

Q ss_pred             EEEcCCCCCccc-ChhhcCCCCCCCEEEccCCcCcc-----cCcccccCCCCCCEEeCCCCCCcccCc------cccCCC
Q psy12291         49 VIDLGINQLSTL-SKDAFTGLYKLTELKLRKNHLSE-----LPGKLFISTINLSTMDLSQNLIKTLPS------TFFKGA  116 (404)
Q Consensus        49 ~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~~  116 (404)
                      +|++..+.++.. ....|..+..|+.|+++++.++.     ++. .+...+.+++++++++.+...+.      ..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            356666666522 22334556667788887777642     222 23455667777777776552111      224445


Q ss_pred             CCCcEEEccCCCCCcCCCccCCCC---CCCCEEECCCCcccccc----cccccCC-ccCcEEeccCCCCCCCCCCccCCC
Q psy12291        117 IRLTVVQLSYNAIESLPANVFHDL---ISLEELDLSQNVLTSIQ----YGTFSGM-YSLKRLKLQSNRINQLPPGIFDDL  188 (404)
Q Consensus       117 ~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~~~l~~~~----~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~l  188 (404)
                      ++|+.|++++|.+.......+..+   ++|++|++++|.+....    ...+..+ ++|+.|++++|.++....      
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------  154 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------  154 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------
Confidence            566666666666543222222222   22555555555544211    1112223 344444444444431100      


Q ss_pred             CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC----hhhhcCCCCCcEEECCCCCCcccCc----ccccCC
Q psy12291        189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKELHLGQNYIETIPA----GSFANL  260 (404)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l  260 (404)
                                    ......+..+++|++|++++|.+....    ...+...++|++|++++|.+.....    ..+..+
T Consensus       155 --------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~  220 (319)
T cd00116         155 --------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL  220 (319)
T ss_pred             --------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence                          001122334455666666666555321    1223344567777777776653321    234556


Q ss_pred             CCCcEEECcCCCcccccccccc-----CCCCCCeeecccccccccCc----cccCCCCCCcEEeCCCCCCcccCcc----
Q psy12291        261 QSLEKLFLYSNNIQELHAGTFA-----GLTNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQYLATD----  327 (404)
Q Consensus       261 ~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~----  327 (404)
                      ++|+.|++++|.+++.....+.     ..+.|++|++++|.++....    ..+..+++|+++++++|.+...+..    
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence            7788888888777653332221     23678888888887763211    3445567888888888888865432    


Q ss_pred             cccCC-CCCcEEEccCCcc
Q psy12291        328 SLSLL-PNLITLKLAKNPW  345 (404)
Q Consensus       328 ~~~~l-~~L~~l~l~~Np~  345 (404)
                      .+... +.++.+++.+|||
T Consensus       301 ~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         301 SLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHhhcCCchhhcccCCCCC
Confidence            23334 6888888888886

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=7.5e-19  Score=159.81  Aligned_cols=255  Identities=24%  Similarity=0.238  Sum_probs=152.9

Q ss_pred             CeeEEEcCCCCCcccC----hhhcCCCCCCCEEEccCCcCcccC------cccccCCCCCCEEeCCCCCCcccCccccCC
Q psy12291         46 DIRVIDLGINQLSTLS----KDAFTGLYKLTELKLRKNHLSELP------GKLFISTINLSTMDLSQNLIKTLPSTFFKG  115 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  115 (404)
                      .++.|+++++.++...    ...+...+.+++|+++++.+...+      ...|..+++|++|++++|.+.......+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            4999999999985432    234567788999999998776311      234567889999999999987544333434


Q ss_pred             C---CCCcEEEccCCCCCcCC----CccCCCC-CCCCEEECCCCcccccc----cccccCCccCcEEeccCCCCCCCCC-
Q psy12291        116 A---IRLTVVQLSYNAIESLP----ANVFHDL-ISLEELDLSQNVLTSIQ----YGTFSGMYSLKRLKLQSNRINQLPP-  182 (404)
Q Consensus       116 ~---~~L~~L~l~~n~l~~~~----~~~~~~l-~~L~~L~l~~~~l~~~~----~~~l~~l~~L~~L~l~~~~l~~~~~-  182 (404)
                      +   ++|++|++++|.+....    ...+..+ ++|+.|++++|.+....    ...+..+++|++|++++|.++.... 
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            4   45999999999887311    1223455 89999999999887322    2345566778888888887763110 


Q ss_pred             ---CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccc--
Q psy12291        183 ---GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSF--  257 (404)
Q Consensus       183 ---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~--  257 (404)
                         ..+...++|+.|++++|.++......+                    ...+..+++|++|++++|.+.......+  
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l--------------------~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~  243 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLTDEGASAL--------------------AETLASLKSLEVLNLGDNNLTDAGAAALAS  243 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccChHHHHHH--------------------HHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence               112233455556655555432211000                    1123344556666666655543211111  


Q ss_pred             ---cCCCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccCc----cccCCC-CCCcEEeCCCCC
Q psy12291        258 ---ANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLDT----KAFEPM-LHLKKLQLDSNK  320 (404)
Q Consensus       258 ---~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l-~~L~~L~l~~n~  320 (404)
                         ...+.|+.|++++|.+++...    ..+..+++|+++++++|.++..+.    ..+... ++|+++++.+|.
T Consensus       244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence               123567777777776653211    233445677777777777765432    233333 577777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.59  E-value=2e-17  Score=127.68  Aligned_cols=131  Identities=34%  Similarity=0.532  Sum_probs=77.1

Q ss_pred             CCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEE
Q psy12291         67 GLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL  146 (404)
Q Consensus        67 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  146 (404)
                      .+.+++.|.++.|+++.+|+.+ +.+.+|+.|++++|+++++|.. ++.+++|+.|++.-|.+...|.+ |+.++.|+.|
T Consensus        31 ~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprg-fgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRG-FGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccc-cCCCchhhhh
Confidence            3455566666666666666654 5666666666666666666654 55666666666666666555443 4666666666


Q ss_pred             ECCCCcccc-cccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcC
Q psy12291        147 DLSQNVLTS-IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL  201 (404)
Q Consensus       147 ~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~  201 (404)
                      |+.+|.+.. ..++.|-.+..|+.|++++|.+.-+|++. +++++|+.|.+..|.+
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDL  162 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCch
Confidence            666665542 23344555566666666666666555543 5555555555555443

>KOG0617|consensus

Probab=99.57  E-value=2.5e-17  Score=127.08  Aligned_cols=159  Identities=28%  Similarity=0.436  Sum_probs=139.9

Q ss_pred             CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEE
Q psy12291         43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVV  122 (404)
Q Consensus        43 ~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  122 (404)
                      ....++.|.+++|.++.++++ ++.+.+|+.|++++|+|+++|... +.+++|+.|+++-|++..+|.+ |+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprg-fgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRG-FGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccc-cCCCchhhhh
Confidence            345799999999999998776 899999999999999999999875 8999999999999999999987 9999999999


Q ss_pred             EccCCCCCc--CCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCc
Q psy12291        123 QLSYNAIES--LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR  200 (404)
Q Consensus       123 ~l~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~  200 (404)
                      ++.+|++..  +|+.+ -.+..|+.|.++.|.+..++ ..++++++|+.|.+.+|.+-.+|.+ ++.++.|+.|.+.+|+
T Consensus       108 dltynnl~e~~lpgnf-f~m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNF-FYMTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNR  184 (264)
T ss_pred             hccccccccccCCcch-hHHHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccce
Confidence            999999873  55554 46889999999999987766 5678999999999999999998876 4889999999999999


Q ss_pred             CcccCCC
Q psy12291        201 LSFIRPG  207 (404)
Q Consensus       201 ~~~~~~~  207 (404)
                      ++.++|+
T Consensus       185 l~vlppe  191 (264)
T KOG0617|consen  185 LTVLPPE  191 (264)
T ss_pred             eeecChh
Confidence            9877653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.39  E-value=4.6e-13  Score=107.85  Aligned_cols=111  Identities=34%  Similarity=0.437  Sum_probs=42.3

Q ss_pred             cCCCCCcEEECCCCCCcccCccccc-CCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCc
Q psy12291        234 SQLTSLKELHLGQNYIETIPAGSFA-NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK  312 (404)
Q Consensus       234 ~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  312 (404)
                      .+..++++|++.+|.+..+..  +. .+.+|+.|++++|.|+.+..  +..++.|++|++++|+|+.+.......+++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             --------------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            344567888888888887754  33 56788888888888888764  67788888888888888888543334578889


Q ss_pred             EEeCCCCCCcccCc-ccccCCCCCcEEEccCCccccc
Q psy12291        313 KLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       313 ~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~Np~~C~  348 (404)
                      +|++++|++..+.. ..+..+++|+.|++.|||+.-.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            99999998887654 4567789999999999998433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.37  E-value=3.2e-13  Score=108.74  Aligned_cols=127  Identities=28%  Similarity=0.356  Sum_probs=50.3

Q ss_pred             CCCCCCEEECCCCcCCCCChhhhc-CCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCe
Q psy12291        211 YFKHLTFLELSENWISSLNGDEFS-QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA  289 (404)
Q Consensus       211 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  289 (404)
                      +..++++|++.+|.+..+.  .+. .+.+|+.|++++|.+..+..  +..++.|+.|++++|.|+.+.......+++|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccccc--chhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            3445666777777666653  233 45677888888888877764  667788888888888888775433345788888


Q ss_pred             eecccccccccCc-cccCCCCCCcEEeCCCCCCcccCcc---cccCCCCCcEEEcc
Q psy12291        290 LFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLATD---SLSLLPNLITLKLA  341 (404)
Q Consensus       290 L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~l~l~  341 (404)
                      |++++|+|..+.. ..+..+++|+.|+|.+|.+.....+   .+..+|+|+.||-.
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            8888888877654 5667788888888888888765442   35568888888764

>KOG1259|consensus

Probab=99.33  E-value=2.4e-13  Score=114.56  Aligned_cols=200  Identities=25%  Similarity=0.257  Sum_probs=127.5

Q ss_pred             CCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCC-CcCcccCCCccCCCCCCCE
Q psy12291        139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN-NRLSFIRPGLFNYFKHLTF  217 (404)
Q Consensus       139 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~  217 (404)
                      .+.+|+.+.++.+.-..+-.-. ..-+.|+.+.+.+..++..+.  +-..+.+....... ...++.....+..++.|++
T Consensus       212 ~f~~l~~~~~s~~~~~~i~~~~-~~kptl~t~~v~~s~~~~~~~--l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte  288 (490)
T KOG1259|consen  212 AFRNLKTLKFSALSTENIVDIE-LLKPTLQTICVHNTTIQDVPS--LLPETILADPSGSEPSTSNGSALVSADTWQELTE  288 (490)
T ss_pred             Hhhhhheeeeeccchhheecee-ecCchhheeeeeccccccccc--ccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence            3456666777666543332111 123567777766655443321  11111111111111 1111111223344567888


Q ss_pred             EECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccc
Q psy12291        218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL  297 (404)
Q Consensus       218 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i  297 (404)
                      +++++|.++.++ ....-+|+++.|+++.|.+..+..  +..+++|+.|+|++|.++.+.. +-..+.+++.|.|++|.|
T Consensus       289 lDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  289 LDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             ccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhhhH
Confidence            888888888776 455667888888888888887765  6778888888888888887743 344567888888888888


Q ss_pred             cccCccccCCCCCCcEEeCCCCCCcccCc-ccccCCCCCcEEEccCCcccc
Q psy12291        298 RYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       298 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      ..+.  .+..+-+|..||+++|++..++. ..++.+|-|+.+.|.+||+.-
T Consensus       365 E~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  365 ETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            7763  35666788888888888887654 457788888888888888754

>KOG3207|consensus

Probab=99.28  E-value=4.2e-13  Score=118.58  Aligned_cols=213  Identities=23%  Similarity=0.232  Sum_probs=145.9

Q ss_pred             CCCCCCcEEEccCCCCCcCCC-ccCCCCCCCCEEECCCCccccccc--ccccCCccCcEEeccCCCCCCCC-CCccCCCC
Q psy12291        114 KGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQNVLTSIQY--GTFSGMYSLKRLKLQSNRINQLP-PGIFDDLK  189 (404)
Q Consensus       114 ~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~  189 (404)
                      +++.+|+.+.|.+......+. .....+++++.|+++.|-+....+  .-...+++|+.|+++.|.+.... ...-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            457788999998887765542 345678899999999987654432  12356789999999998876322 11123467


Q ss_pred             CCCeEecCCCcCcccCC-CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc-ccccCCCCCcEEE
Q psy12291        190 YLDFLSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA-GSFANLQSLEKLF  267 (404)
Q Consensus       190 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~  267 (404)
                      +|+.|.++.|.++.-.. .....+|+|+.|++..|....+......-+..|+.|+|++|++-..+. .....+|.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            88889998888763221 224567888888888885322222333455678889999888776662 2456788888888


Q ss_pred             CcCCCcccccccc------ccCCCCCCeeecccccccccCc-cccCCCCCCcEEeCCCCCCcccCc
Q psy12291        268 LYSNNIQELHAGT------FAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       268 L~~n~l~~~~~~~------~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  326 (404)
                      ++.+.+.++..-.      ...+++|++|+++.|+|..+.. ..+..+++|+.|.+..|.+.....
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccccc
Confidence            8888887653311      2446888888888888876654 556667788888888887776543

>KOG1259|consensus

Probab=99.25  E-value=1.4e-12  Score=109.98  Aligned_cols=227  Identities=19%  Similarity=0.175  Sum_probs=149.2

Q ss_pred             CCCCCEEeCCCCC--Cc--ccCcc----ccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccC
Q psy12291         92 TINLSTMDLSQNL--IK--TLPST----FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG  163 (404)
Q Consensus        92 ~~~L~~L~l~~n~--l~--~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~  163 (404)
                      +..|.+|.++...  +.  .|.+.    -+.-+.+|+.+.++.+.-..|..-... -|.|+++.+.+..+...+  .+-.
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~-kptl~t~~v~~s~~~~~~--~l~p  257 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELL-KPTLQTICVHNTTIQDVP--SLLP  257 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeec-Cchhheeeeecccccccc--cccc
Confidence            4567777776542  22  12111    133356777777777655544433222 357777777665444332  1111


Q ss_pred             CccCcEEeccCCCC-CCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEE
Q psy12291        164 MYSLKRLKLQSNRI-NQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL  242 (404)
Q Consensus       164 l~~L~~L~l~~~~l-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  242 (404)
                      ...+.......-.. ++........-..|+++++++|.++.++ +.+.-.|.++.|+++.|.+..+..  +..+++|++|
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~L  334 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLL  334 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEe
Confidence            12222211111111 1100011122346888888888888774 456777889999999998887763  7778899999


Q ss_pred             ECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc-cccCCCCCCcEEeCCCCCC
Q psy12291        243 HLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKL  321 (404)
Q Consensus       243 ~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l  321 (404)
                      ++++|.++.+.. +-..+.+.++|.|++|.|.++..  +..+-+|..||+++|+|..++. ..++++|-|+.+.|.+|.+
T Consensus       335 DLS~N~Ls~~~G-wh~KLGNIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  335 DLSGNLLAECVG-WHLKLGNIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ecccchhHhhhh-hHhhhcCEeeeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            999998888775 45567889999999999888754  6677899999999999988764 6788899999999999999


Q ss_pred             cccCcc
Q psy12291        322 QYLATD  327 (404)
Q Consensus       322 ~~~~~~  327 (404)
                      ..++.+
T Consensus       412 ~~~vdY  417 (490)
T KOG1259|consen  412 AGSVDY  417 (490)
T ss_pred             cccchH
Confidence            988764

>KOG0531|consensus

Probab=99.23  E-value=8.7e-13  Score=123.68  Aligned_cols=266  Identities=32%  Similarity=0.445  Sum_probs=144.7

Q ss_pred             CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEE
Q psy12291         43 IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVV  122 (404)
Q Consensus        43 ~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  122 (404)
                      .+...+.++...+.+...... ...+..++.+.+..|.+..+... +..+.+|+.|++.+|.|..+... +..+++|++|
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L  123 (414)
T KOG0531|consen   47 VPSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVL  123 (414)
T ss_pred             ccchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccc-hhhhhcchhe
Confidence            344555555555544433222 13455666666777777663322 35667777777777777766543 4567777777


Q ss_pred             EccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCC-CccCCCCCCCeEecCCCcC
Q psy12291        123 QLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRL  201 (404)
Q Consensus       123 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~  201 (404)
                      ++++|.|+.+.+  +..++.|+.|++++|.+..+.  .+..+..|+.+++++|.+..+.. . ...+.+++.+.+.+|.+
T Consensus       124 ~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  124 DLSFNKITKLEG--LSTLTLLKELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             eccccccccccc--hhhccchhhheeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            777777777665  445566777777777776664  23346677777777777766654 1 24455666666666665


Q ss_pred             cccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCC--CcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccc
Q psy12291        202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS--LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG  279 (404)
Q Consensus       202 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  279 (404)
                      ..+..  +..+..+..+++..|.+..+.+  +..+..  |+.++++++++..++. .+..+..+..|++.+|.+..+.. 
T Consensus       199 ~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~-~~~~~~~l~~l~~~~n~~~~~~~-  272 (414)
T KOG0531|consen  199 REIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPE-GLENLKNLPVLDLSSNRISNLEG-  272 (414)
T ss_pred             hcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccc-cccccccccccchhhcccccccc-
Confidence            54321  2223333334555555544431  112222  5666666666655531 24445566666666665555432 


Q ss_pred             cccCCCCCCeeecccccccccC---cc-ccCCCCCCcEEeCCCCCCcc
Q psy12291        280 TFAGLTNLTALFLNNNLLRYLD---TK-AFEPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       280 ~~~~~~~L~~L~l~~n~i~~~~---~~-~~~~l~~L~~L~l~~n~l~~  323 (404)
                       +...+.+..+....+.+....   .. .....+.++.+.+..|.+..
T Consensus       273 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  273 -LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             -ccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence             233445555555555443211   11 12334455555555555444

>KOG3207|consensus

Probab=99.20  E-value=2e-12  Score=114.34  Aligned_cols=210  Identities=23%  Similarity=0.196  Sum_probs=132.5

Q ss_pred             CCCCCCEEEccCCcCcccCc-ccccCCCCCCEEeCCCCCCcccC--ccccCCCCCCcEEEccCCCCCcCCC-ccCCCCCC
Q psy12291         67 GLYKLTELKLRKNHLSELPG-KLFISTINLSTMDLSQNLIKTLP--STFFKGAIRLTVVQLSYNAIESLPA-NVFHDLIS  142 (404)
Q Consensus        67 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~  142 (404)
                      ++.+|+...|.++.+...+. .....+++++.|||++|-+....  ......+++|+.|+++.|.+..... ..-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            56778888888877765542 23366888888888888665322  1234567888888888887764332 11224567


Q ss_pred             CCEEECCCCccccccccc-ccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccC-CCccCCCCCCCEEEC
Q psy12291        143 LEELDLSQNVLTSIQYGT-FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR-PGLFNYFKHLTFLEL  220 (404)
Q Consensus       143 L~~L~l~~~~l~~~~~~~-l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l  220 (404)
                      |+.|.++.|.+..-.... +..+|+|+.|++..|....+......-+..|+.|+|++|.+-..+ ....+.++.|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            888888888776433222 345678888888887533333333445567888888887765443 133566777777777


Q ss_pred             CCCcCCCCChhhh------cCCCCCcEEECCCCCCcccCc-ccccCCCCCcEEECcCCCcccc
Q psy12291        221 SENWISSLNGDEF------SQLTSLKELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQEL  276 (404)
Q Consensus       221 ~~~~~~~~~~~~~------~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~  276 (404)
                      +.+.+..+.....      ...++|++|++..|++.+.+. ..+..+++|+.|.+..|.+..-
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            7777765533222      345678888888887765542 2344566777777777766543

>KOG1909|consensus

Probab=99.20  E-value=1.4e-12  Score=112.12  Aligned_cols=133  Identities=25%  Similarity=0.274  Sum_probs=73.5

Q ss_pred             CCCCEEECCCCcCCCCCh----hhhcCCCCCcEEECCCCCCcccC----cccccCCCCCcEEECcCCCcccccc----cc
Q psy12291        213 KHLTFLELSENWISSLNG----DEFSQLTSLKELHLGQNYIETIP----AGSFANLQSLEKLFLYSNNIQELHA----GT  280 (404)
Q Consensus       213 ~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~  280 (404)
                      +.|+++....|++...+.    ..|...+.|+.+.+..|.+..-.    ...+.+++.|+.|+|.+|.++.-..    .+
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            445555555555444332    23344456666666666554211    1234556666666666666654322    34


Q ss_pred             ccCCCCCCeeecccccccccCcccc-----CCCCCCcEEeCCCCCCcccCc----ccccCCCCCcEEEccCCcc
Q psy12291        281 FAGLTNLTALFLNNNLLRYLDTKAF-----EPMLHLKKLQLDSNKLQYLAT----DSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       281 ~~~~~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~l~~Np~  345 (404)
                      +..+++|++|++++|.++.-...++     ...|+|+.|.+.+|.++.-..    ..+...|.|..|+|++|.+
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            4555666777777666655443222     235677777777777664211    2234467778888888887

>KOG0531|consensus

Probab=99.19  E-value=2e-12  Score=121.21  Aligned_cols=263  Identities=30%  Similarity=0.367  Sum_probs=192.3

Q ss_pred             CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291         70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS  149 (404)
Q Consensus        70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  149 (404)
                      .++.++...+.+...... ...+..++.+.+..|.+..+... +..+.+|..|++.+|.+..+... +..+++|+.|+++
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccc-hhhhhcchheecc
Confidence            344455544443333222 13466777788888888874332 66788999999999999988763 4568899999999


Q ss_pred             CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCC-CccCCCCCCCEEECCCCcCCCC
Q psy12291        150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSL  228 (404)
Q Consensus       150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~  228 (404)
                      +|.|..+.  .+..++.|+.|++.+|.+..+..  +..++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+..+
T Consensus       127 ~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  127 FNKITKLE--GLSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI  201 (414)
T ss_pred             cccccccc--chhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence            99998876  45567779999999999998775  4568999999999999887755 2 46788899999999988776


Q ss_pred             ChhhhcCCCCCcEEECCCCCCcccCcccccCCCC--CcEEECcCCCccccccccccCCCCCCeeecccccccccCccccC
Q psy12291        229 NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS--LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE  306 (404)
Q Consensus       229 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  306 (404)
                      ..  +..+..+..+++..|.+..+..  +..+..  |+.+++.+|.+..++ ..+..+..+..+++.+|++..+..  +.
T Consensus       202 ~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~--~~  274 (414)
T KOG0531|consen  202 EG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG--LE  274 (414)
T ss_pred             cc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc--cc
Confidence            53  3344455566888888887664  233344  899999999998874 346678899999999999887643  44


Q ss_pred             CCCCCcEEeCCCCCCccc---Cc-ccccCCCCCcEEEccCCcccc
Q psy12291        307 PMLHLKKLQLDSNKLQYL---AT-DSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       307 ~l~~L~~L~l~~n~l~~~---~~-~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      ..+.+..+....|.+...   .. ......+.++.+.+.+||..-
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  275 RLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence            556777788888876632   11 124567888999999998754

>KOG1909|consensus

Probab=99.17  E-value=1.3e-12  Score=112.30  Aligned_cols=89  Identities=21%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             hcCCCCCcEEECCCCCCcccCc----ccccCCCCCcEEECcCCCccccccccc-----cCCCCCCeeecccccccccCc-
Q psy12291        233 FSQLTSLKELHLGQNYIETIPA----GSFANLQSLEKLFLYSNNIQELHAGTF-----AGLTNLTALFLNNNLLRYLDT-  302 (404)
Q Consensus       233 ~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~i~~~~~-  302 (404)
                      +..+++|+.|++.+|.++.-..    ..++..+.|+.|++++|.++.-...+|     ...|+|++|.+.+|.|+.-.. 
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            3344444444444444432211    123334455555555555544322211     224566666666665543211 


Q ss_pred             ---cccCCCCCCcEEeCCCCCC
Q psy12291        303 ---KAFEPMLHLKKLQLDSNKL  321 (404)
Q Consensus       303 ---~~~~~l~~L~~L~l~~n~l  321 (404)
                         ......+.|..|+|++|++
T Consensus       289 ~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  289 ALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhcchhhHHhcCCcccc
Confidence               2223356666667777666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=5.7e-11  Score=111.22  Aligned_cols=199  Identities=32%  Similarity=0.436  Sum_probs=148.0

Q ss_pred             EEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCC-CCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC
Q psy12291         73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGA-IRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN  151 (404)
Q Consensus        73 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~  151 (404)
                      .+++..+.+..-... ....+.++.|++.+|.++.+++. ...+ .+|+.|++++|.+..++.. ...+++|+.|+++.|
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh-hhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhh-hhccccccccccCCc
Confidence            577777776322222 23457788999999988888874 3334 2899999999988887522 467889999999999


Q ss_pred             cccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChh
Q psy12291        152 VLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGD  231 (404)
Q Consensus       152 ~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  231 (404)
                      ++..++... ...+.|+.|++++|.+..++... .....|+++.+++|..... +..+..+.++..+.+..|.+...+ .
T Consensus       174 ~l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~-~  249 (394)
T COG4886         174 DLSDLPKLL-SNLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLP-E  249 (394)
T ss_pred             hhhhhhhhh-hhhhhhhheeccCCccccCchhh-hhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeecc-c
Confidence            888876432 25678899999999998888742 3445688999998853333 344677788888888888776642 4


Q ss_pred             hhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcccccccc
Q psy12291        232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGT  280 (404)
Q Consensus       232 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  280 (404)
                      .+..+++++.|++++|.+..++.  +..+.+++.|+++++.+..+.+..
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence            56778889999999999999886  778899999999999888776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=5.2e-11  Score=111.51  Aligned_cols=197  Identities=33%  Similarity=0.445  Sum_probs=137.3

Q ss_pred             EEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCC-CCCEEECCCCcccccccccccCCccCcEEeccCC
Q psy12291         97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI-SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN  175 (404)
Q Consensus        97 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  175 (404)
                      .+++..+.+..-... ....+.++.|++.+|.++.+++.. ..+. +|+.|+++.|.+..+. ..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchh-hhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhh-hhhhccccccccccCCc
Confidence            577777776322222 334577888889888888887743 2332 7888888888887764 34667788888888888


Q ss_pred             CCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc
Q psy12291        176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG  255 (404)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  255 (404)
                      ++..++... ...++|+.|++++|++..++.. ......|+++.+++|.....+ ..+..+.++..+.+.+|++..++. 
T Consensus       174 ~l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~-~~~~~~~~l~~l~l~~n~~~~~~~-  249 (394)
T COG4886         174 DLSDLPKLL-SNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPE-  249 (394)
T ss_pred             hhhhhhhhh-hhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecc-hhhhhcccccccccCCceeeeccc-
Confidence            888887642 3667888888888888777542 234455888888887533332 345666777777777777766433 


Q ss_pred             cccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc
Q psy12291        256 SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT  302 (404)
Q Consensus       256 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  302 (404)
                      .+..+++++.|++++|.++.++.  ++.+.+++.|++++|.+..+.+
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            46667778888888888887765  6677788888888877765544

>KOG0532|consensus

Probab=99.13  E-value=1.8e-12  Score=118.32  Aligned_cols=168  Identities=31%  Similarity=0.419  Sum_probs=82.0

Q ss_pred             EEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCC
Q psy12291        169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY  248 (404)
Q Consensus       169 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  248 (404)
                      ..+++.|++..++..+ ..+..|+.+.+..|.+..+ +..+.++..|.+++++.|++...+.. +..+ -|+.|-+++|+
T Consensus        79 ~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNNK  154 (722)
T ss_pred             hhhccccccccCchHH-HHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecCc
Confidence            3444444444444332 3334444444444444433 23344444555555555555444422 2222 25555555555


Q ss_pred             CcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccc
Q psy12291        249 IETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS  328 (404)
Q Consensus       249 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  328 (404)
                      ++.+|.+ ++..+.|..|+.+.|.+..++. .++++.+|+.|.++.|++.+++.+..  .-.|..||++.|++..+|. .
T Consensus       155 l~~lp~~-ig~~~tl~~ld~s~nei~slps-ql~~l~slr~l~vrRn~l~~lp~El~--~LpLi~lDfScNkis~iPv-~  229 (722)
T KOG0532|consen  155 LTSLPEE-IGLLPTLAHLDVSKNEIQSLPS-QLGYLTSLRDLNVRRNHLEDLPEELC--SLPLIRLDFSCNKISYLPV-D  229 (722)
T ss_pred             cccCCcc-cccchhHHHhhhhhhhhhhchH-HhhhHHHHHHHHHhhhhhhhCCHHHh--CCceeeeecccCceeecch-h
Confidence            5555542 3344555555555555555533 24455555555555555555544433  2245555555555555544 2


Q ss_pred             ccCCCCCcEEEccCCcc
Q psy12291        329 LSLLPNLITLKLAKNPW  345 (404)
Q Consensus       329 ~~~l~~L~~l~l~~Np~  345 (404)
                      |..|..|+.|-|.+||+
T Consensus       230 fr~m~~Lq~l~LenNPL  246 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPL  246 (722)
T ss_pred             hhhhhhheeeeeccCCC
Confidence            45555555555555555

>KOG4658|consensus

Probab=99.13  E-value=3.3e-11  Score=120.81  Aligned_cols=139  Identities=27%  Similarity=0.352  Sum_probs=78.8

Q ss_pred             CCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc--CcccCcccccCCCCCCEEeCCCC-CCccc
Q psy12291         32 QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH--LSELPGKLFISTINLSTMDLSQN-LIKTL  108 (404)
Q Consensus        32 ~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~L~~L~l~~n-~l~~~  108 (404)
                      .++..+|..... ..++++.+-+|.+..+...  ...+.|++|-+.+|.  +..++...|..++.|++||+++| .+..+
T Consensus       511 ~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L  587 (889)
T KOG4658|consen  511 VGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL  587 (889)
T ss_pred             cCccccccccch-hheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence            344444443222 3566666666665544322  223356666666664  55666666666666666666665 45555


Q ss_pred             CccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCC
Q psy12291        109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN  175 (404)
Q Consensus       109 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  175 (404)
                      |.. ++.+-+|++|+++++.+..+|.+ +.++..|.+|++..+......+.....+++|++|.+...
T Consensus       588 P~~-I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  588 PSS-IGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ChH-HhhhhhhhcccccCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            554 55666666666666666666654 356666666666665433333344444666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.12  E-value=3.8e-11  Score=79.72  Aligned_cols=59  Identities=36%  Similarity=0.510  Sum_probs=26.3

Q ss_pred             CCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCC
Q psy12291        262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK  320 (404)
Q Consensus       262 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  320 (404)
                      +|+.|++++|+++.++..+|.++++|++|++++|+++.+++++|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34444444444444444444444444444444444444444444444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.10  E-value=5.9e-11  Score=78.76  Aligned_cols=61  Identities=36%  Similarity=0.503  Sum_probs=58.5

Q ss_pred             CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       285 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      |+|++|++++|+++.++...|..+++|++|++++|.++.++++.+..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999999999999999999999999999999999999999999999999974

...

>TIGR00864 PCC polycystin cation channel protein

Probab=99.08  E-value=1e-10  Score=124.69  Aligned_cols=83  Identities=28%  Similarity=0.636  Sum_probs=72.8

Q ss_pred             eCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccC-CCCeeCCCCCCCCCcccCCCCcCC-C
Q psy12291        315 QLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDL-C  392 (404)
Q Consensus       315 ~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~-~~~~C~~p~~l~~~~l~~~~~~~~-C  392 (404)
                      ||++|+|+.++...|..+++|+.|+|++|||+|||.+.||..|++.....+.. ...+|++|+.++|+++.++...++ |
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            68899999999999999999999999999999999999999999988655433 367899999999999999987765 8


Q ss_pred             Ccccc
Q psy12291        393 EGQWA  397 (404)
Q Consensus       393 ~~~~~  397 (404)
                      +....
T Consensus        81 ~~~y~   85 (2740)
T TIGR00864        81 DEEYV   85 (2740)
T ss_pred             CCcce
Confidence            76654

Note: this model has been restricted to the amino half because for technical reasons.

>KOG4658|consensus

Probab=99.06  E-value=1.2e-10  Score=116.98  Aligned_cols=288  Identities=21%  Similarity=0.191  Sum_probs=167.6

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCC--CcccChhhcCCCCCCCEEEccCC-cCcccCcccccCCCCCCEEeC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQ--LSTLSKDAFTGLYKLTELKLRKN-HLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      .+.+...++.+..++.....+ .+++|-+..|.  +..+....|..++.|+.|||++| .+.++|..+ +.+-+|++|++
T Consensus       525 ~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L  602 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDL  602 (889)
T ss_pred             eeEEEEeccchhhccCCCCCC-ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccc
Confidence            455666777787777765444 79999999986  78888888999999999999977 566777654 88999999999


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcc--cccccccccCCccCcEEeccCCCCC
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL--TSIQYGTFSGMYSLKRLKLQSNRIN  178 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l--~~~~~~~l~~l~~L~~L~l~~~~l~  178 (404)
                      ++..++.+|.+ +.++..|.+|++..+......++....+++|++|.+.....  .......+..+.+|+.+....... 
T Consensus       603 ~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-  680 (889)
T KOG4658|consen  603 SDTGISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-  680 (889)
T ss_pred             cCCCccccchH-HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence            99999999987 88999999999998765544466667789999999876541  111222333444455444433322 


Q ss_pred             CCCCCccCCCCCCC----eEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcC------CCCCcEEECCCCC
Q psy12291        179 QLPPGIFDDLKYLD----FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ------LTSLKELHLGQNY  248 (404)
Q Consensus       179 ~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------l~~L~~L~l~~~~  248 (404)
                      .+... +..+..|.    .+.+.++.. ......+..+.+|+.|.+.++............      ++++..+.+.++.
T Consensus       681 ~~~e~-l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~  758 (889)
T KOG4658|consen  681 LLLED-LLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH  758 (889)
T ss_pred             HhHhh-hhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence            11111 12223332    222222221 122344566777777777777665432211111      2233333333332


Q ss_pred             CcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccC-ccccCCCCCCcEEeCCC
Q psy12291        249 IETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD-TKAFEPMLHLKKLQLDS  318 (404)
Q Consensus       249 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~  318 (404)
                      ....+. +....++|+.|.+..+....-+......+..+..+.+..+.+.... ....+.++++..+.+..
T Consensus       759 ~~r~l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~  828 (889)
T KOG4658|consen  759 MLRDLT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF  828 (889)
T ss_pred             cccccc-hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence            222222 1223477777777776554433333334444444344444333331 22333344444444433

>KOG1859|consensus

Probab=99.01  E-value=2.6e-12  Score=120.31  Aligned_cols=129  Identities=28%  Similarity=0.365  Sum_probs=89.2

Q ss_pred             CCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecc
Q psy12291        214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN  293 (404)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  293 (404)
                      .|.+.+++.|.+..++ .++.-++.|+.|+++.|++.++.  .+..+++|++|||++|.++.++.-...++. |+.|.++
T Consensus       165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4555666666665554 35556667777777777777766  366777777777777777777654444454 8888888


Q ss_pred             cccccccCccccCCCCCCcEEeCCCCCCcccCc-ccccCCCCCcEEEccCCccccc
Q psy12291        294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       294 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~Np~~C~  348 (404)
                      +|.++.+  ..+.++.+|+.||+++|-|.+... ..+..+..|+.|+|.|||+.|.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            8877766  345667788888888887765432 2345567888999999999775

>KOG0532|consensus

Probab=98.96  E-value=1.8e-11  Score=111.92  Aligned_cols=173  Identities=30%  Similarity=0.392  Sum_probs=89.3

Q ss_pred             CCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCC
Q psy12291         71 LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQ  150 (404)
Q Consensus        71 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  150 (404)
                      -...+++.|++..+|..+ ..+..|+.+.+..|.+..+|.. +.++..|..|+|+.|++..++...+ . --|+.|-+++
T Consensus        77 t~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC-~-lpLkvli~sN  152 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLC-D-LPLKVLIVSN  152 (722)
T ss_pred             hhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhh-c-CcceeEEEec
Confidence            344555555555555442 4444555555666655555544 4455556666666666655555432 1 2455566666


Q ss_pred             CcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCCh
Q psy12291        151 NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG  230 (404)
Q Consensus       151 ~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  230 (404)
                      |+++.++ ..++....|.+|+.+.|.+..+++. +..+.+|+.|.+..|++..++++.. .+ .|..||++.|++..++ 
T Consensus       153 Nkl~~lp-~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~El~-~L-pLi~lDfScNkis~iP-  227 (722)
T KOG0532|consen  153 NKLTSLP-EEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPEELC-SL-PLIRLDFSCNKISYLP-  227 (722)
T ss_pred             CccccCC-cccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCHHHh-CC-ceeeeecccCceeecc-
Confidence            6555544 2334455555666666665555544 2555555555555555554433322 22 2445555555555444 


Q ss_pred             hhhcCCCCCcEEECCCCCCccc
Q psy12291        231 DEFSQLTSLKELHLGQNYIETI  252 (404)
Q Consensus       231 ~~~~~l~~L~~L~l~~~~l~~~  252 (404)
                      -.|..|..|++|-|.+|.+..-
T Consensus       228 v~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhhhhhheeeeeccCCCCCC
Confidence            2344555555555555554443

>PLN03150 hypothetical protein; Provisional

Probab=98.89  E-value=4.1e-09  Score=103.54  Aligned_cols=112  Identities=19%  Similarity=0.227  Sum_probs=92.3

Q ss_pred             CCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCC
Q psy12291        238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD  317 (404)
Q Consensus       238 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  317 (404)
                      .++.|+++++.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|+++...+..+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788999998886655578889999999999999987666678889999999999999998778888899999999999


Q ss_pred             CCCCcccCcccccC-CCCCcEEEccCCcccccc
Q psy12291        318 SNKLQYLATDSLSL-LPNLITLKLAKNPWHCDC  349 (404)
Q Consensus       318 ~n~l~~~~~~~~~~-l~~L~~l~l~~Np~~C~c  349 (404)
                      +|++++..+..+.. ..++..+++.+|+..|.+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCC
Confidence            99998765555544 346778899999987754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.83  E-value=1.4e-08  Score=79.00  Aligned_cols=126  Identities=19%  Similarity=0.413  Sum_probs=64.8

Q ss_pred             cChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCC
Q psy12291         60 LSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHD  139 (404)
Q Consensus        60 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  139 (404)
                      +...+|.++.+|+.+.+.. .+..++...|..+++|+.+.+.++ +..++..+|.+++.++.+.+.. .+..++...|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4455677777777777764 566777777777777777777664 6667766777776777777755 555666666766


Q ss_pred             CCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCC
Q psy12291        140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL  191 (404)
Q Consensus       140 l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  191 (404)
                      +++|+.+.+..+ +..+....|.++ +|+.+.+.. .+..++...|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            777777777654 556666666665 777777665 5566666666665554

>PLN03150 hypothetical protein; Provisional

Probab=98.81  E-value=2.6e-08  Score=97.94  Aligned_cols=122  Identities=16%  Similarity=0.141  Sum_probs=86.5

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      .+..+.|......       ....++.|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..+++|++|++++
T Consensus       403 ~w~Gv~C~~~~~~-------~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~  475 (623)
T PLN03150        403 PWSGADCQFDSTK-------GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY  475 (623)
T ss_pred             ccccceeeccCCC-------CceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence            3778888632111       112488999999999887788899999999999999998854444568899999999999


Q ss_pred             CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCC-CCCCCEEECCCC
Q psy12291        103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHD-LISLEELDLSQN  151 (404)
Q Consensus       103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~~  151 (404)
                      |.+....+..+.++++|+.|++++|.+....+..+.. ..++..+++.+|
T Consensus       476 N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        476 NSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            9888544455788888888888888877433322322 224445555554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.73  E-value=3.6e-08  Score=76.65  Aligned_cols=124  Identities=23%  Similarity=0.376  Sum_probs=54.0

Q ss_pred             cCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccC
Q psy12291         84 LPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG  163 (404)
Q Consensus        84 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~  163 (404)
                      ++..+|.++.+|+.+.+.. .+..++...|.++.+|+.+.+..+ +..++...|.++++++.+.+.. .+..+....|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4555666666666666653 455666666666666666666553 5566666666665666666644 444455555555


Q ss_pred             CccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCC
Q psy12291        164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK  213 (404)
Q Consensus       164 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  213 (404)
                      +++|+.+.+..+ +..++...|... +++.+.+.. .+..+....|.+++
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~  126 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT  126 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence            566666665443 444555555554 555555543 33333333344333

>KOG1859|consensus

Probab=98.65  E-value=3e-10  Score=106.85  Aligned_cols=178  Identities=24%  Similarity=0.265  Sum_probs=120.0

Q ss_pred             CCCCCCEEECCCCcccccccccccCC-ccCcEEeccCCC----------CCCCCCCccCCCCCCCeEecCCCcCcccCCC
Q psy12291        139 DLISLEELDLSQNVLTSIQYGTFSGM-YSLKRLKLQSNR----------INQLPPGIFDDLKYLDFLSLRNNRLSFIRPG  207 (404)
Q Consensus       139 ~l~~L~~L~l~~~~l~~~~~~~l~~l-~~L~~L~l~~~~----------l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  207 (404)
                      .+..|+.|.++++++....  .+..+ ..|++|...+.-          ...+... +. -..|.+.+.+.|.+..+ ..
T Consensus       107 pF~sLr~LElrg~~L~~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~~-Wn~L~~a~fsyN~L~~m-D~  181 (1096)
T KOG1859|consen  107 PFRSLRVLELRGCDLSTAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNS-PV-WNKLATASFSYNRLVLM-DE  181 (1096)
T ss_pred             cccceeeEEecCcchhhhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-hh-hhhHhhhhcchhhHHhH-HH
Confidence            4567888888887765421  11111 245554433310          0111111 11 13467777788877655 35


Q ss_pred             ccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCC
Q psy12291        208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL  287 (404)
Q Consensus       208 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  287 (404)
                      .+.-++.++.|+|+.|++..+.  .+..+++|++||+++|.+..+|.-....+ +|+.|.+++|.++.+..  +.++.+|
T Consensus       182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~g--ie~LksL  256 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTLRG--IENLKSL  256 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhhhh--HHhhhhh
Confidence            5677888999999999988876  67888999999999999988886333333 49999999998888754  5678899


Q ss_pred             CeeecccccccccCc-cccCCCCCCcEEeCCCCCCcccCc
Q psy12291        288 TALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       288 ~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~  326 (404)
                      +.||+++|-|..... ..+..+..|+.|.|.+|.+-.-+.
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            999999998776533 344556788899999998865443

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=98.58  E-value=2.7e-08  Score=63.21  Aligned_cols=49  Identities=29%  Similarity=0.728  Sum_probs=38.5

Q ss_pred             CccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-C
Q psy12291        343 NPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-C  392 (404)
Q Consensus       343 Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C  392 (404)
                      |||.|||.+.||..|+.+..........+|++|+.++ .++.++..+++ |
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhCCC
Confidence            8999999999999999883222223379999999998 66888876554 6

>KOG1644|consensus

Probab=98.55  E-value=1.5e-07  Score=75.58  Aligned_cols=104  Identities=20%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccccccc-ccccCCccCcEEe
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLK  171 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~  171 (404)
                      .+...+|+++|.+..++.  |..++.|.+|.+.+|.|+.|.+..-..+++|+.|.+.+|.+..+.. ..+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            345556666666655544  5566666666666666666655544445566666666665554431 2344556666666


Q ss_pred             ccCCCCCCCCC---CccCCCCCCCeEecCC
Q psy12291        172 LQSNRINQLPP---GIFDDLKYLDFLSLRN  198 (404)
Q Consensus       172 l~~~~l~~~~~---~~~~~l~~L~~L~l~~  198 (404)
                      +-+|.++....   ..+..+++|++|+..+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            66665543321   2234455555555544

>KOG4579|consensus

Probab=98.52  E-value=3.6e-09  Score=79.23  Aligned_cols=134  Identities=21%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             CCCEEECCCCcCCCCCh--hhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeee
Q psy12291        214 HLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF  291 (404)
Q Consensus       214 ~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  291 (404)
                      .+..++++.+.+..+..  ..+.....|+..++++|.+.++|+..-..++.++.|++++|.|.+++.. +..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence            34556777776664432  2233445677789999999988876555667889999999999999877 88899999999


Q ss_pred             cccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccC
Q psy12291        292 LNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA  350 (404)
Q Consensus       292 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~  350 (404)
                      ++.|.+...+.- +..+.++..|+..+|.+..++.+.+. -...-.+++.++||.-.|.
T Consensus       107 l~~N~l~~~p~v-i~~L~~l~~Lds~~na~~eid~dl~~-s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  107 LRFNPLNAEPRV-IAPLIKLDMLDSPENARAEIDVDLFY-SSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             cccCccccchHH-HHHHHhHHHhcCCCCccccCcHHHhc-cccHHHHHhcCCcccccCc
Confidence            999988877443 44488888999999999988877332 2222344567888865554

>KOG2982|consensus

Probab=98.51  E-value=2.9e-08  Score=84.19  Aligned_cols=223  Identities=21%  Similarity=0.205  Sum_probs=119.8

Q ss_pred             CCCCEEEccCCcCcccCcc-cc-cCCCCCCEEeCCCCCCcc---cCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCC
Q psy12291         69 YKLTELKLRKNHLSELPGK-LF-ISTINLSTMDLSQNLIKT---LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL  143 (404)
Q Consensus        69 ~~L~~L~l~~~~l~~~~~~-~~-~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  143 (404)
                      ..+..|.+.++.|..+... .| ..++.++.+|+.+|.|+.   |. ..+.++|.|++|+++.|++.......-....+|
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~-~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG-AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH-HHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            3445556666665543321 11 345677778888887763   22 235677888888888887764322211245677


Q ss_pred             CEEECCCCccccccc-ccccCCccCcEEeccCCCCCCC--CCCccCC-CCCCCeEecCCCcCccc--CCCccCCCCCCCE
Q psy12291        144 EELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQL--PPGIFDD-LKYLDFLSLRNNRLSFI--RPGLFNYFKHLTF  217 (404)
Q Consensus       144 ~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~--~~~~~~~-l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~  217 (404)
                      +.|.+.+..+..... ..+..+|.+++|.++.|++..+  .+..... -+.+.++...+|....-  ....-.-++++..
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            888887776543322 2345667777887777754321  1111111 13455555555532210  0011223456666


Q ss_pred             EECCCCcCCCCCh-hhhcCCCCCcEEECCCCCCcccCc-ccccCCCCCcEEECcCCCcccccc------ccccCCCCCCe
Q psy12291        218 LELSENWISSLNG-DEFSQLTSLKELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQELHA------GTFAGLTNLTA  289 (404)
Q Consensus       218 L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~~~~L~~  289 (404)
                      +.+..+.+..... +.+..+|.+..|.++.+++..... +.+..++.|..|.++++.+.+-..      -.++.+++++.
T Consensus       204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v  283 (418)
T KOG2982|consen  204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV  283 (418)
T ss_pred             eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence            6666665554322 334455666677777776654432 345566777777777776654211      12345566666


Q ss_pred             eec
Q psy12291        290 LFL  292 (404)
Q Consensus       290 L~l  292 (404)
                      |+=
T Consensus       284 LNG  286 (418)
T KOG2982|consen  284 LNG  286 (418)
T ss_pred             ecC
Confidence            543

>KOG1644|consensus

Probab=98.50  E-value=2e-07  Score=74.83  Aligned_cols=105  Identities=26%  Similarity=0.327  Sum_probs=79.6

Q ss_pred             CCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc-cccCCCCCCcEEeC
Q psy12291        238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQL  316 (404)
Q Consensus       238 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l  316 (404)
                      ....+++++|.+..++.  |+.++.|.+|.+.+|.|+.|.+..-..++.|..|.|.+|.|..+.. ..+..+|.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            45677788887777664  7778888888888888888877665667888888888888777643 56677888888888


Q ss_pred             CCCCCcccCc---ccccCCCCCcEEEccCCc
Q psy12291        317 DSNKLQYLAT---DSLSLLPNLITLKLAKNP  344 (404)
Q Consensus       317 ~~n~l~~~~~---~~~~~l~~L~~l~l~~Np  344 (404)
                      -+|.++.-..   +.+..+|+|+.||+.+-.
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            8888876544   346678899999887643

>KOG2982|consensus

Probab=98.28  E-value=1.6e-07  Score=79.86  Aligned_cols=223  Identities=18%  Similarity=0.217  Sum_probs=142.5

Q ss_pred             CcEEEccCCCCCcCCCc-cC-CCCCCCCEEECCCCccccccc--ccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeE
Q psy12291        119 LTVVQLSYNAIESLPAN-VF-HDLISLEELDLSQNVLTSIQY--GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL  194 (404)
Q Consensus       119 L~~L~l~~n~l~~~~~~-~~-~~l~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  194 (404)
                      +..+.+.++.+..+... .| ...+.++.+++.+|.+.....  .-+.++|.|+.|+++.|.+.......-....+|++|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            44555566655544321 11 235678999999998875432  335788999999999998875332221356789999


Q ss_pred             ecCCCcCcccC-CCccCCCCCCCEEECCCCcCCCC--ChhhhcCC-CCCcEEECCCCCCcccCc--ccccCCCCCcEEEC
Q psy12291        195 SLRNNRLSFIR-PGLFNYFKHLTFLELSENWISSL--NGDEFSQL-TSLKELHLGQNYIETIPA--GSFANLQSLEKLFL  268 (404)
Q Consensus       195 ~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l-~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L  268 (404)
                      .+.+..+.... ...+..+|.++.|.++.|.+..+  +....... +.+++|+..+|.......  ..-..+|++..+.+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            99888776432 23456778888888888844322  11222222 356677777764432110  01223578888888


Q ss_pred             cCCCcccccc-ccccCCCCCCeeecccccccccCc-cccCCCCCCcEEeCCCCCCcccCcc------cccCCCCCcEEEc
Q psy12291        269 YSNNIQELHA-GTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLATD------SLSLLPNLITLKL  340 (404)
Q Consensus       269 ~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~l~l  340 (404)
                      ..|.+.+... ..+..+|.+..|+|+.++|..... ..+.+++.|.-|.++++.+...-..      .++.+++++.|+=
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence            8888877644 345667788888999998887654 6778888999999999887753322      2455667666554


Q ss_pred             c
Q psy12291        341 A  341 (404)
Q Consensus       341 ~  341 (404)
                      +
T Consensus       287 s  287 (418)
T KOG2982|consen  287 S  287 (418)
T ss_pred             c
Confidence            3

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=1.3e-07  Score=79.37  Aligned_cols=218  Identities=18%  Similarity=0.216  Sum_probs=102.6

Q ss_pred             CeeEEEcCCCCCcccChhh----cCCCCCCCEEEccCCcCc----ccC------cccccCCCCCCEEeCCCCCCcc-cCc
Q psy12291         46 DIRVIDLGINQLSTLSKDA----FTGLYKLTELKLRKNHLS----ELP------GKLFISTINLSTMDLSQNLIKT-LPS  110 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~----~~~~~~L~~L~l~~~~l~----~~~------~~~~~~~~~L~~L~l~~n~l~~-~~~  110 (404)
                      .++.+++++|.|.+-.+..    +++-.+|+..++++-...    .++      ..++.+|++|+..++|+|.+.. .|+
T Consensus        31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e  110 (388)
T COG5238          31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE  110 (388)
T ss_pred             ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence            4666666666665443322    334455665555543221    111      1122345556666666654431 111


Q ss_pred             ---cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCC----
Q psy12291        111 ---TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPG----  183 (404)
Q Consensus       111 ---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~----  183 (404)
                         ..+++...|.+|.+++|.+..+.+..++.  .|.+|  ..|       ...+.-|.|+.+....|++..-+..    
T Consensus       111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~~~~a~  179 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSKELSAA  179 (388)
T ss_pred             HHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhccCcHHHHHH
Confidence               22344455555555555554443322210  00000  000       0112345666666666665543321    


Q ss_pred             ccCCCCCCCeEecCCCcCcccC-----CCccCCCCCCCEEECCCCcCCCCCh----hhhcCCCCCcEEECCCCCCcccCc
Q psy12291        184 IFDDLKYLDFLSLRNNRLSFIR-----PGLFNYFKHLTFLELSENWISSLNG----DEFSQLTSLKELHLGQNYIETIPA  254 (404)
Q Consensus       184 ~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~  254 (404)
                      .+..-.+|+.+.+..|.+..-.     ...+..+++|+.|++.+|.++....    .++..++.|+.|.+.+|-++.-..
T Consensus       180 ~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~  259 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV  259 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence            1222245666666666554210     0112335677777777776665443    334555667777777776654332


Q ss_pred             cc----c--cCCCCCcEEECcCCCcc
Q psy12291        255 GS----F--ANLQSLEKLFLYSNNIQ  274 (404)
Q Consensus       255 ~~----~--~~l~~L~~L~L~~n~l~  274 (404)
                      ..    |  ...|+|+.|...+|.+.
T Consensus       260 ~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         260 KSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHHHHhhhhcCCCccccccchhhhc
Confidence            11    1  12366666666666543

>KOG2120|consensus

Probab=98.19  E-value=2.2e-08  Score=84.96  Aligned_cols=85  Identities=20%  Similarity=0.161  Sum_probs=44.9

Q ss_pred             CCCEEeCCCCCCccc-CccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC-cccccccc-cccCCccCcEE
Q psy12291         94 NLSTMDLSQNLIKTL-PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN-VLTSIQYG-TFSGMYSLKRL  170 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~-~l~~l~~L~~L  170 (404)
                      .|++|||++..|+.- -...++.+.+|+.|.+.++++..-....+..-.+|+.|+++.+ .++..... .+.+++.|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466777776665521 1122445666666666666665432223344556666666655 23322211 23456666666


Q ss_pred             eccCCCCC
Q psy12291        171 KLQSNRIN  178 (404)
Q Consensus       171 ~l~~~~l~  178 (404)
                      ++++|.+.
T Consensus       266 NlsWc~l~  273 (419)
T KOG2120|consen  266 NLSWCFLF  273 (419)
T ss_pred             CchHhhcc
Confidence            66666543

>KOG2120|consensus

Probab=98.18  E-value=5.7e-09  Score=88.44  Aligned_cols=152  Identities=14%  Similarity=0.151  Sum_probs=81.5

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCccc-ChhhcCCC-CCCCEEEccCCcCcc-cCcccccCCCCCCEEeC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL-SKDAFTGL-YKLTELKLRKNHLSE-LPGKLFISTINLSTMDL  100 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~-~~~~~~~~-~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l  100 (404)
                      ++.++..+.++...-.......++..+.+...-+..- ....+.-+ ..|++|||++..|+. --...+..+.+|+.|.+
T Consensus       138 W~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl  217 (419)
T KOG2120|consen  138 WQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL  217 (419)
T ss_pred             eeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc
Confidence            5666666666654433322333455554443222111 01111111 347788888777662 12234566777888888


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccCC-CCCcCC-CccCCCCCCCCEEECCCCcccccccc-cccC-CccCcEEeccCC
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSYN-AIESLP-ANVFHDLISLEELDLSQNVLTSIQYG-TFSG-MYSLKRLKLQSN  175 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~-~l~~-l~~L~~L~l~~~  175 (404)
                      .++++.+--...+..-.+|+.|+++.+ .++... .-.+..++.|..|+++.|.+...... ...+ -.+|+.|+++++
T Consensus       218 Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~  296 (419)
T KOG2120|consen  218 EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY  296 (419)
T ss_pred             cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence            888776533333556677888888764 344332 12356677888888888765422111 1111 135666666664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=2e-06  Score=52.17  Aligned_cols=38  Identities=29%  Similarity=0.404  Sum_probs=16.6

Q ss_pred             CCCeeecccccccccCccccCCCCCCcEEeCCCCCCccc
Q psy12291        286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYL  324 (404)
Q Consensus       286 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  324 (404)
                      +|++|++++|+|+.+++ .+..+++|+.|++++|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            34444444444444432 244445555555555544443

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=8.5e-07  Score=74.55  Aligned_cols=234  Identities=22%  Similarity=0.172  Sum_probs=149.9

Q ss_pred             CCCCCcEEEccCCCCCcCCC----ccCCCCCCCCEEECCCCcccc----------cccccccCCccCcEEeccCCCCCCC
Q psy12291        115 GAIRLTVVQLSYNAIESLPA----NVFHDLISLEELDLSQNVLTS----------IQYGTFSGMYSLKRLKLQSNRINQL  180 (404)
Q Consensus       115 ~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~~~l~~----------~~~~~l~~l~~L~~L~l~~~~l~~~  180 (404)
                      .+..+..++|++|.+..-..    ..+.+-.+|+...++.--...          .-..++.+|+.|+.+++++|.+..-
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            46788999999998764322    223445567777766432111          1123466789999999999987643


Q ss_pred             CC----CccCCCCCCCeEecCCCcCcccCCCc-------------cCCCCCCCEEECCCCcCCCCChhh----hcCCCCC
Q psy12291        181 PP----GIFDDLKYLDFLSLRNNRLSFIRPGL-------------FNYFKHLTFLELSENWISSLNGDE----FSQLTSL  239 (404)
Q Consensus       181 ~~----~~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L  239 (404)
                      .+    ..++.-+.|..|.+.+|.+..+....             ...-|.|+++....|++...+...    +..-..|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            22    22345678899999998776443322             234578889999888887655322    2233578


Q ss_pred             cEEECCCCCCcccCcc-----cccCCCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccCcccc-----
Q psy12291        240 KELHLGQNYIETIPAG-----SFANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLDTKAF-----  305 (404)
Q Consensus       240 ~~L~l~~~~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~~~-----  305 (404)
                      +.+.+..|.+..-...     -+..+.+|+.|+++.|.++....    .++...+.|++|.+..|-++.-+...+     
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            8899988877633211     13356889999999998876444    345556778999998887776544221     


Q ss_pred             -CCCCCCcEEeCCCCCCcc--cCc---cc--ccCCCCCcEEEccCCccccc
Q psy12291        306 -EPMLHLKKLQLDSNKLQY--LAT---DS--LSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       306 -~~l~~L~~L~l~~n~l~~--~~~---~~--~~~l~~L~~l~l~~Np~~C~  348 (404)
                       ...|+|..|-..+|.+..  +-.   ..  -..+|-|..+.+.||.+.-+
T Consensus       268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence             135788888888886543  111   11  13467777888888888543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.12  E-value=2.5e-06  Score=51.70  Aligned_cols=38  Identities=37%  Similarity=0.602  Sum_probs=16.4

Q ss_pred             CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCccc
Q psy12291         70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL  108 (404)
Q Consensus        70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  108 (404)
                      +|++|++++|+|+++++. +.++++|++|++++|.++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            344444444444444432 34444444444444444443

...

>KOG4579|consensus

Probab=98.11  E-value=6e-08  Score=72.80  Aligned_cols=109  Identities=22%  Similarity=0.291  Sum_probs=53.1

Q ss_pred             CCEEEccCCcCcccCcc--cccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEEC
Q psy12291         71 LTELKLRKNHLSELPGK--LFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL  148 (404)
Q Consensus        71 L~~L~l~~~~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  148 (404)
                      +-.++|+++++..++..  .+....+|+..+|++|.++++|+.+-..++.++.|++.+|.+.++|.. +..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhccc
Confidence            33455555554433321  123334455555555555555555444445555555555555555544 445555555555


Q ss_pred             CCCcccccccccccCCccCcEEeccCCCCCCCC
Q psy12291        149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP  181 (404)
Q Consensus       149 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~  181 (404)
                      +.|++.... ..+..+.++..|+..+|.+..++
T Consensus       108 ~~N~l~~~p-~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen  108 RFNPLNAEP-RVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             ccCccccch-HHHHHHHhHHHhcCCCCccccCc
Confidence            555554433 22222445555555555444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=0.00011  Score=67.01  Aligned_cols=133  Identities=17%  Similarity=0.166  Sum_probs=72.2

Q ss_pred             CCCCCCEEECCCCcccccccccccCCccCcEEeccCC-CCCCCCCCccCCCCCCCeEecCCC-cCcccCCCccCCCCCCC
Q psy12291        139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN-RINQLPPGIFDDLKYLDFLSLRNN-RLSFIRPGLFNYFKHLT  216 (404)
Q Consensus       139 ~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~  216 (404)
                      .+.+++.|++++|.+..++  .+  ..+|++|.+.++ .++.++. .+  .++|+.|.+++| .+..+       .++|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sL-------P~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGL-------PESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccc-------ccccc
Confidence            3567788888888776664  12  236888888764 3444442 22  256777888776 33322       23567


Q ss_pred             EEECCCCcCCCCChhhhcCC-CCCcEEECCCCCCc---ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeec
Q psy12291        217 FLELSENWISSLNGDEFSQL-TSLKELHLGQNYIE---TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL  292 (404)
Q Consensus       217 ~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  292 (404)
                      .|++..+....+     ..+ ++|+.|.+.+++..   .++. .  -.++|+.|++++|....++.. +.  .+|+.|++
T Consensus       116 ~L~L~~n~~~~L-----~~LPssLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~LP~~-LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSI-----KNVPNGLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNIILPEK-LP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCccc-----ccCcchHhheecccccccccccccc-c--cCCcccEEEecCCCcccCccc-cc--ccCcEEEe
Confidence            777665543322     122 35667766443211   1110 1  125677777777765543321 22  57777777


Q ss_pred             cccc
Q psy12291        293 NNNL  296 (404)
Q Consensus       293 ~~n~  296 (404)
                      +.+.
T Consensus       185 s~n~  188 (426)
T PRK15386        185 HIEQ  188 (426)
T ss_pred             cccc
Confidence            6653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.86  E-value=0.00016  Score=66.13  Aligned_cols=136  Identities=17%  Similarity=0.172  Sum_probs=76.6

Q ss_pred             CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC-CCCCcCCCccCCCCCCCCEEECCCC-cccccccccccCCccCc
Q psy12291         91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQN-VLTSIQYGTFSGMYSLK  168 (404)
Q Consensus        91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~  168 (404)
                      .+.+++.|++++|.++.+|.  +  ..+|+.|.+++ +.++.++.. +  .++|+.|.+++| .+..++       ..|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP-------~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP-------ESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc-------cccc
Confidence            46788999999998888873  2  34789999886 445555542 2  357888888877 443322       3577


Q ss_pred             EEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCC
Q psy12291        169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN  247 (404)
Q Consensus       169 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  247 (404)
                      .|++..+....+..    -.++|+.|.+.+++........-.-.++|++|.+++|.....+ ..+.  .+|+.|+++.+
T Consensus       116 ~L~L~~n~~~~L~~----LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP-~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        116 SLEIKGSATDSIKN----VPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILP-EKLP--ESLQSITLHIE  187 (426)
T ss_pred             eEEeCCCCCccccc----CcchHhheeccccccccccccccccCCcccEEEecCCCcccCc-cccc--ccCcEEEeccc
Confidence            77776655433221    1134666666432211000000011246777777776654333 1121  46777777655

>KOG3665|consensus

Probab=97.79  E-value=8.5e-06  Score=80.39  Aligned_cols=109  Identities=22%  Similarity=0.182  Sum_probs=54.8

Q ss_pred             CCCCCEEECCCCcccccc-cccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc-CCCccCCCCCCCE
Q psy12291        140 LISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI-RPGLFNYFKHLTF  217 (404)
Q Consensus       140 l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~  217 (404)
                      +|+|+.|.+.+-.+..-. .....++++|..||++++.++.+.  ..+.+++|+.|.+.+-.+... .-..+.++++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            555666665554332211 122344556666666666665542  235566666666665544421 1122445666666


Q ss_pred             EECCCCcCCCCCh------hhhcCCCCCcEEECCCCCCc
Q psy12291        218 LELSENWISSLNG------DEFSQLTSLKELHLGQNYIE  250 (404)
Q Consensus       218 L~l~~~~~~~~~~------~~~~~l~~L~~L~l~~~~l~  250 (404)
                      ||+|.......+.      +.-..+|+|+.||++++.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            6666654443331      11124566777777665544

>KOG3665|consensus

Probab=97.79  E-value=7.1e-06  Score=80.96  Aligned_cols=82  Identities=23%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             ccCcEEeccCCCCCC--CCCCccCCCCCCCeEecCCCcCcccC-CCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcE
Q psy12291        165 YSLKRLKLQSNRINQ--LPPGIFDDLKYLDFLSLRNNRLSFIR-PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE  241 (404)
Q Consensus       165 ~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  241 (404)
                      .+|++|++++...-.  -+...-..+|+|+.|.+.+-.+..-. .....++++|..||+++..++.+  ..++.+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            366777776643221  11111123455555555554432110 12233444455555554444443  23344444444


Q ss_pred             EECCCCC
Q psy12291        242 LHLGQNY  248 (404)
Q Consensus       242 L~l~~~~  248 (404)
                      |.+.+-.
T Consensus       200 L~mrnLe  206 (699)
T KOG3665|consen  200 LSMRNLE  206 (699)
T ss_pred             HhccCCC
Confidence            4444433

>KOG2123|consensus

Probab=97.75  E-value=1.1e-06  Score=74.14  Aligned_cols=82  Identities=27%  Similarity=0.329  Sum_probs=48.1

Q ss_pred             CCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc-cccCCCCCCcEEe
Q psy12291        237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQ  315 (404)
Q Consensus       237 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~  315 (404)
                      .+.+.|++-|+.+.+|..  ...++.|+.|.|+-|+|+.+.+  |..|++|++|+|..|.|..+.. ..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            345556666666655542  4456666666666666666543  5556666666666666665543 4555666666666


Q ss_pred             CCCCCCc
Q psy12291        316 LDSNKLQ  322 (404)
Q Consensus       316 l~~n~l~  322 (404)
                      |..|.-.
T Consensus        95 L~ENPCc  101 (388)
T KOG2123|consen   95 LDENPCC  101 (388)
T ss_pred             hccCCcc
Confidence            6666543

>KOG2739|consensus

Probab=97.66  E-value=1.9e-05  Score=66.40  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=17.2

Q ss_pred             CCCCeeecccccccccCc-cccCCCCCCcEEeCCCCCCcc
Q psy12291        285 TNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       285 ~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~  323 (404)
                      |+|+++++++|+|+.+.. ..+..+.+|..|++.+|..+.
T Consensus        91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             CceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence            445555555554443221 223334444455555544444

>KOG4341|consensus

Probab=97.48  E-value=2e-06  Score=76.56  Aligned_cols=285  Identities=18%  Similarity=0.054  Sum_probs=142.4

Q ss_pred             CCCEEEccCCcCc-ccCcc-cccCCCCCCEEeCCCCC-CcccCc-cccCCCCCCcEEEccCC-CCCcCCC-ccCCCCCCC
Q psy12291         70 KLTELKLRKNHLS-ELPGK-LFISTINLSTMDLSQNL-IKTLPS-TFFKGAIRLTVVQLSYN-AIESLPA-NVFHDLISL  143 (404)
Q Consensus        70 ~L~~L~l~~~~l~-~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L  143 (404)
                      -|+.|.++++.=. .-+.. .-.+++++++|.+.++. +++..- .+-..+.+|++|++..+ .++...- ..-.++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            4566666665322 11111 12456677777666663 332111 11223566666666663 3333221 122345667


Q ss_pred             CEEECCCCc-ccccccc-cccCCccCcEEeccCCCCCCCCCCcc----CCCCCCCeEecCCCc-CcccCC-CccCCCCCC
Q psy12291        144 EELDLSQNV-LTSIQYG-TFSGMYSLKRLKLQSNRINQLPPGIF----DDLKYLDFLSLRNNR-LSFIRP-GLFNYFKHL  215 (404)
Q Consensus       144 ~~L~l~~~~-l~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~~~~-~~~~~~-~~~~~l~~L  215 (404)
                      ++|.+++++ +..-... .+.++..++.+...+|.  +...+.+    .....+..+++..+. ++.... ..-..+..|
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            777776663 2221111 12344445555444432  1111111    112223334433331 121110 011234567


Q ss_pred             CEEECCCCcCCC-CChhhh-cCCCCCcEEECCCCC-CcccCcccc-cCCCCCcEEECcCCCccccc-c-ccccCCCCCCe
Q psy12291        216 TFLELSENWISS-LNGDEF-SQLTSLKELHLGQNY-IETIPAGSF-ANLQSLEKLFLYSNNIQELH-A-GTFAGLTNLTA  289 (404)
Q Consensus       216 ~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~~~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-~-~~~~~~~~L~~  289 (404)
                      ++++.+++.... ..-.++ .+.++|+.|-+.+++ ++......+ .+.+.|+.+++.++...... . ..-.+++.|++
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            777777664322 111222 356788888888874 444332222 24678888888887544322 1 22346889999


Q ss_pred             eecccccc-cccCc----cccCCCCCCcEEeCCCCCCcc-cCcccccCCCCCcEEEccCCccccccCcHHHHH
Q psy12291        290 LFLNNNLL-RYLDT----KAFEPMLHLKKLQLDSNKLQY-LATDSLSLLPNLITLKLAKNPWHCDCAILYMAR  356 (404)
Q Consensus       290 L~l~~n~i-~~~~~----~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~  356 (404)
                      +.++.+.. +..+.    ..-..+..|..+.|+++.... .....+..+++|+.+++.+..-.-.-....|.+
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~  449 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT  449 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence            99987743 32211    222346778999999986543 434567778999999997654433333333333

>KOG2123|consensus

Probab=97.36  E-value=5.5e-06  Score=70.05  Aligned_cols=82  Identities=28%  Similarity=0.379  Sum_probs=71.6

Q ss_pred             CCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc-ccccCCCCCcEE
Q psy12291        260 LQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITL  338 (404)
Q Consensus       260 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~l  338 (404)
                      +.+.++|+.-|+.+.+|..  ...++.|++|.|+-|+|+.+.  .+..|++|++|+|+.|.|.+++. ..+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            4677899999999999864  467899999999999999884  47789999999999999999875 446789999999


Q ss_pred             EccCCcc
Q psy12291        339 KLAKNPW  345 (404)
Q Consensus       339 ~l~~Np~  345 (404)
                      .|..||-
T Consensus        94 WL~ENPC  100 (388)
T KOG2123|consen   94 WLDENPC  100 (388)
T ss_pred             hhccCCc
Confidence            9999995

>KOG2739|consensus

Probab=97.35  E-value=8.5e-05  Score=62.56  Aligned_cols=105  Identities=27%  Similarity=0.301  Sum_probs=51.7

Q ss_pred             CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC--CCChhhhcCCCCCcEEECCCCCCcccCc-ccccCCCC
Q psy12291        186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS--SLNGDEFSQLTSLKELHLGQNYIETIPA-GSFANLQS  262 (404)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~  262 (404)
                      ..+..|+.+.+.+..++.+.  .+..+++|+.|.++.|+..  .-.......+|+|+++++++|++..+.. ..+..+++
T Consensus        40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34455666666665555432  3455667777777777332  2111122334666666666666553221 11334455


Q ss_pred             CcEEECcCCCcccccc---ccccCCCCCCeeec
Q psy12291        263 LEKLFLYSNNIQELHA---GTFAGLTNLTALFL  292 (404)
Q Consensus       263 L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l  292 (404)
                      |..|++.+|..+....   ..|.-+++|++|+-
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            5556665554443222   23334455554444

>KOG4341|consensus

Probab=97.06  E-value=1.4e-05  Score=71.47  Aligned_cols=292  Identities=17%  Similarity=0.081  Sum_probs=164.0

Q ss_pred             CeeEEEcCCCCCcc-cChhh-cCCCCCCCEEEccCCc-CcccCcccc-cCCCCCCEEeCCCC-CCcccC-ccccCCCCCC
Q psy12291         46 DIRVIDLGINQLST-LSKDA-FTGLYKLTELKLRKNH-LSELPGKLF-ISTINLSTMDLSQN-LIKTLP-STFFKGAIRL  119 (404)
Q Consensus        46 ~l~~L~l~~~~i~~-~~~~~-~~~~~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~-~~~~~~~~~L  119 (404)
                      .++.|.++++.-.. -.... -..++++++|.+.++. +++..-..+ ..+++|++|++..| .++... .....++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46777777764222 22222 3467888888887773 443221111 45788888888886 455332 1234568888


Q ss_pred             cEEEccCCC-CCc--CCCccCCCCCCCCEEECCCCccccccc--ccccCCccCcEEeccCCC-CCCCCC-CccCCCCCCC
Q psy12291        120 TVVQLSYNA-IES--LPANVFHDLISLEELDLSQNVLTSIQY--GTFSGMYSLKRLKLQSNR-INQLPP-GIFDDLKYLD  192 (404)
Q Consensus       120 ~~L~l~~n~-l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~-l~~~~~-~~~~~l~~L~  192 (404)
                      ++++++.+. ++.  +. ..+.++..++.+.+.+|.-.....  ..-+++.-+..+++..|. ++...- .+-..+..|+
T Consensus       219 ~~lNlSwc~qi~~~gv~-~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQ-ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHhhhccCchhhcCcch-HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            888888764 221  11 123455566666666653111110  011233445566655542 232210 1113456788


Q ss_pred             eEecCCCcCc-cc-CCCccCCCCCCCEEECCCCc-CCCCChhhh-cCCCCCcEEECCCCCCcccC--cccccCCCCCcEE
Q psy12291        193 FLSLRNNRLS-FI-RPGLFNYFKHLTFLELSENW-ISSLNGDEF-SQLTSLKELHLGQNYIETIP--AGSFANLQSLEKL  266 (404)
Q Consensus       193 ~L~l~~~~~~-~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L  266 (404)
                      .+..+++... .. ......+.++|+++.+..++ ++......+ .+++.|+.+++.++......  ...-.+++.|+.|
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            8888776431 11 11123456889999998875 333332222 35678999999887543221  1223467999999


Q ss_pred             ECcCCCcc-ccccccc----cCCCCCCeeeccccccc-ccCccccCCCCCCcEEeCCCCCCcc-cC-cccccCCCCCcEE
Q psy12291        267 FLYSNNIQ-ELHAGTF----AGLTNLTALFLNNNLLR-YLDTKAFEPMLHLKKLQLDSNKLQY-LA-TDSLSLLPNLITL  338 (404)
Q Consensus       267 ~L~~n~l~-~~~~~~~----~~~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~l~~L~~l  338 (404)
                      .++.+.+. +.....+    .++..|..+.|+++... +-.-+.+..+++|+.+++-+++-.. .+ .....++|+++..
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            99987543 3222222    34678999999988543 3444667788899999998875322 21 2233456766543

>KOG1947|consensus

Probab=96.41  E-value=0.00018  Score=69.40  Aligned_cols=35  Identities=26%  Similarity=0.187  Sum_probs=15.2

Q ss_pred             CcEEeCCCCCCcccCc-ccccC-CCCCcEEEccCCcc
Q psy12291        311 LKKLQLDSNKLQYLAT-DSLSL-LPNLITLKLAKNPW  345 (404)
Q Consensus       311 L~~L~l~~n~l~~~~~-~~~~~-l~~L~~l~l~~Np~  345 (404)
                      ++.|+++.+....... ..... +..+..+++.+.+.
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~  439 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV  439 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence            5566666654433221 11111 44455555555443

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.13  E-value=0.0058  Score=32.72  Aligned_cols=25  Identities=32%  Similarity=0.817  Sum_probs=20.7

Q ss_pred             CCCCceecCCCceEEecCCCCCccCCC
Q psy12291         14 CEGPCRCRPEIHTLSCWKQDMEELPFD   40 (404)
Q Consensus        14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~   40 (404)
                      ||..|.|.  ...|+|++.+|+++|.+
T Consensus         2 CP~~C~C~--~~~V~C~~~~L~~vP~~   26 (28)
T PF01462_consen    2 CPRPCTCS--GLTVDCSGRGLTAVPSD   26 (28)
T ss_dssp             SETTSEEE--TTEEEETTSS-SSS-ST
T ss_pred             cCCCCEec--CCEeECCCCCCCccCCC
Confidence            78899999  68899999999999975

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=95.99  E-value=0.011  Score=33.11  Aligned_cols=30  Identities=33%  Similarity=0.946  Sum_probs=25.2

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVD   46 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~   46 (404)
                      .||..|.|.  ...++|.+.+++.+|..  +|.+
T Consensus         1 ~CP~~C~C~--~~~V~C~~~~L~~vP~~--iP~~   30 (33)
T smart00013        1 ACPAPCNCS--GTAVDCSGRGLTEVPLD--LPPD   30 (33)
T ss_pred             CcCCCCEEC--CCEeEeCCCCcCccCCC--CCcc
Confidence            378999998  57899999999999986  5543

>KOG1947|consensus

Probab=95.94  E-value=0.00032  Score=67.60  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=16.2

Q ss_pred             CCeeecccccccccCc-cccCC-CCCCcEEeCCCCC
Q psy12291        287 LTALFLNNNLLRYLDT-KAFEP-MLHLKKLQLDSNK  320 (404)
Q Consensus       287 L~~L~l~~n~i~~~~~-~~~~~-l~~L~~L~l~~n~  320 (404)
                      ++.|+++.+....... ..... +..++.+++.+..
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~  438 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR  438 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence            6677777665433222 11111 4455555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.82  E-value=0.0031  Score=31.65  Aligned_cols=16  Identities=44%  Similarity=0.683  Sum_probs=7.3

Q ss_pred             CCEEeCCCCCCcccCc
Q psy12291         95 LSTMDLSQNLIKTLPS  110 (404)
Q Consensus        95 L~~L~l~~n~l~~~~~  110 (404)
                      |++|++++|.++.+|+
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.004  Score=32.37  Aligned_cols=23  Identities=30%  Similarity=0.729  Sum_probs=17.5

Q ss_pred             CeeCCCCCCCCCcccCCCCcCC-CC
Q psy12291        370 PTCRGPGNLGGKSVEDMSFDDL-CE  393 (404)
Q Consensus       370 ~~C~~p~~l~~~~l~~~~~~~~-C~  393 (404)
                      .+|++|+.++| +|.++...++ |+
T Consensus         2 ~~Ca~P~~lrg-~l~~~~~~~f~C~   25 (25)
T PF01463_consen    2 ARCASPPELRG-PLLDLPPSDFKCS   25 (25)
T ss_dssp             -BEEESGGGTT-BGGGSSGGG----
T ss_pred             CccCCChHHcC-cHhhCCcccCcCC
Confidence            58999999999 9999987665 63

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.29  E-value=0.0079  Score=30.13  Aligned_cols=17  Identities=35%  Similarity=0.589  Sum_probs=9.8

Q ss_pred             CCEEEccCCcCcccCcc
Q psy12291         71 LTELKLRKNHLSELPGK   87 (404)
Q Consensus        71 L~~L~l~~~~l~~~~~~   87 (404)
                      |++|++++|+++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            55566666666555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.01  E-value=0.014  Score=27.08  Aligned_cols=11  Identities=55%  Similarity=0.761  Sum_probs=3.2

Q ss_pred             CCEEeCCCCCC
Q psy12291         95 LSTMDLSQNLI  105 (404)
Q Consensus        95 L~~L~l~~n~l  105 (404)
                      |++|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33344443333

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.00  E-value=0.017  Score=26.83  Aligned_cols=15  Identities=40%  Similarity=0.687  Sum_probs=6.2

Q ss_pred             CCcEEeCCCCCCccc
Q psy12291        310 HLKKLQLDSNKLQYL  324 (404)
Q Consensus       310 ~L~~L~l~~n~l~~~  324 (404)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.97  E-value=0.022  Score=29.80  Aligned_cols=20  Identities=45%  Similarity=0.735  Sum_probs=10.1

Q ss_pred             CCCEEeCCCCCCcccCcccc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFF  113 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~  113 (404)
                      +|++|++++|.++.+|+.+|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            45555555555555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.97  E-value=0.022  Score=29.80  Aligned_cols=20  Identities=45%  Similarity=0.735  Sum_probs=10.1

Q ss_pred             CCCEEeCCCCCCcccCcccc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFF  113 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~  113 (404)
                      +|++|++++|.++.+|+.+|
T Consensus         3 ~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        3 NLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCEEECCCCcCCcCCHHHc
Confidence            45555555555555554443

>KOG3864|consensus

Probab=94.67  E-value=0.0071  Score=49.26  Aligned_cols=92  Identities=16%  Similarity=0.078  Sum_probs=61.1

Q ss_pred             ccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-CcccCcccc-cCCCCCCEEeCCCC-CCcccCccc
Q psy12291         36 ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH-LSELPGKLF-ISTINLSTMDLSQN-LIKTLPSTF  112 (404)
Q Consensus        36 ~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~  112 (404)
                      +.|........++.+|-++..|..+....+.+++.++.|.+.++. +.+-.-..+ .-.++|+.|++++| .|++-.-..
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            444433333468999999999988888888888899998888873 332111111 23567888888888 577655444


Q ss_pred             cCCCCCCcEEEccCC
Q psy12291        113 FKGAIRLTVVQLSYN  127 (404)
Q Consensus       113 ~~~~~~L~~L~l~~n  127 (404)
                      +..+++|+.|.+.+-
T Consensus       172 L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDL  186 (221)
T ss_pred             HHHhhhhHHHHhcCc
Confidence            666777777766543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.65  E-value=0.029  Score=29.37  Aligned_cols=23  Identities=48%  Similarity=0.615  Sum_probs=18.4

Q ss_pred             CCCCCEEEccCCcCcccCccccc
Q psy12291         68 LYKLTELKLRKNHLSELPGKLFI   90 (404)
Q Consensus        68 ~~~L~~L~l~~~~l~~~~~~~~~   90 (404)
                      +++|+.|++++|+|..+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788888888888888887764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.65  E-value=0.029  Score=29.37  Aligned_cols=23  Identities=48%  Similarity=0.615  Sum_probs=18.4

Q ss_pred             CCCCCEEEccCCcCcccCccccc
Q psy12291         68 LYKLTELKLRKNHLSELPGKLFI   90 (404)
Q Consensus        68 ~~~L~~L~l~~~~l~~~~~~~~~   90 (404)
                      +++|+.|++++|+|..+|.++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            45788888888888888887764

>KOG3864|consensus

Probab=93.98  E-value=0.0052  Score=49.99  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=12.8

Q ss_pred             CCcEEeCCCC-CCcccCcccccCCCCCcEEEccC
Q psy12291        310 HLKKLQLDSN-KLQYLATDSLSLLPNLITLKLAK  342 (404)
Q Consensus       310 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~  342 (404)
                      +|+.|+|++| +|++-.-..+..+++|+.|.+.+
T Consensus       152 ~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  152 SLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             chheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            3444444433 23333333333444444444433

>KOG4308|consensus

Probab=91.61  E-value=0.00081  Score=63.74  Aligned_cols=61  Identities=25%  Similarity=0.271  Sum_probs=31.9

Q ss_pred             CcEEECcCCCcccccc----ccccCC-CCCCeeecccccccccCc----cccCCCCCCcEEeCCCCCCcc
Q psy12291        263 LEKLFLYSNNIQELHA----GTFAGL-TNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       263 L~~L~L~~n~l~~~~~----~~~~~~-~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~  323 (404)
                      +..|++..|.+.+...    ..+..+ ..+++++++.|.|+.-..    +.+..++.++++.+.+|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            4446666665554322    122223 455666666666654433    334445566666666666654

>KOG4308|consensus

Probab=90.75  E-value=0.0028  Score=60.15  Aligned_cols=183  Identities=22%  Similarity=0.200  Sum_probs=103.8

Q ss_pred             CCEEECCCCcccccccc----cccCCccCcEEeccCCCCCCCCCCc----cCCC-CCCCeEecCCCcCcccCCCccCCCC
Q psy12291        143 LEELDLSQNVLTSIQYG----TFSGMYSLKRLKLQSNRINQLPPGI----FDDL-KYLDFLSLRNNRLSFIRPGLFNYFK  213 (404)
Q Consensus       143 L~~L~l~~~~l~~~~~~----~l~~l~~L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~  213 (404)
                      +..|.+.+|.+..-...    .+...+.|+.|++++|.+.......    +... ..+++|.+..|.++.....      
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------  162 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------  162 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------
Confidence            66777777766544322    3445567777777777766321110    1111 2334444444433321100      


Q ss_pred             CCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccC--------cccccCCCCCcEEECcCCCcccccc----ccc
Q psy12291        214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP--------AGSFANLQSLEKLFLYSNNIQELHA----GTF  281 (404)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~----~~~  281 (404)
                                    .....+.....++.++++.|.+....        ...+....++++|.+.++.++....    ..+
T Consensus       163 --------------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l  228 (478)
T KOG4308|consen  163 --------------PLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL  228 (478)
T ss_pred             --------------HHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH
Confidence                          00122233445555555555442110        1112345678888888887764322    244


Q ss_pred             cCCCC-CCeeecccccccccCc----cccCCC-CCCcEEeCCCCCCcccCccc----ccCCCCCcEEEccCCcc
Q psy12291        282 AGLTN-LTALFLNNNLLRYLDT----KAFEPM-LHLKKLQLDSNKLQYLATDS----LSLLPNLITLKLAKNPW  345 (404)
Q Consensus       282 ~~~~~-L~~L~l~~n~i~~~~~----~~~~~l-~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~Np~  345 (404)
                      ...++ +..|++..|++.....    ..+..+ ..+++++++.|.++.-....    +..++.++.+.+.+|+.
T Consensus       229 ~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  229 ASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             hccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            45555 7789999999876533    233444 67799999999999865533    44567899999999987

>KOG0473|consensus

Probab=90.12  E-value=0.0043  Score=51.58  Aligned_cols=85  Identities=22%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             cCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCC
Q psy12291         65 FTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE  144 (404)
Q Consensus        65 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  144 (404)
                      +..+...+.||++.|++..+... |+.++.|..|+++.|.+..+|.+ +.....++.+++..|.....|.. +...+.++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQPKS-QKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhCCcc-ccccCCcc
Confidence            33334444444444444433322 23344444444444444444433 33333344444444444433322 23444444


Q ss_pred             EEECCCCc
Q psy12291        145 ELDLSQNV  152 (404)
Q Consensus       145 ~L~l~~~~  152 (404)
                      .+++-++.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            44444443

>KOG0473|consensus

Probab=87.63  E-value=0.012  Score=49.02  Aligned_cols=92  Identities=22%  Similarity=0.219  Sum_probs=57.3

Q ss_pred             ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccccc
Q psy12291        251 TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS  330 (404)
Q Consensus       251 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  330 (404)
                      .++...+......+.||++.|.+..... -|..++.+..|+++.|++...+. .+.....+..+++.+|..+..|- .+.
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~-s~~  108 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQPK-SQK  108 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhCCc-ccc
Confidence            3343334455666667777666655533 24455667777777777766633 33444556667777777766643 466


Q ss_pred             CCCCCcEEEccCCcc
Q psy12291        331 LLPNLITLKLAKNPW  345 (404)
Q Consensus       331 ~l~~L~~l~l~~Np~  345 (404)
                      ..+.++.+++.+|||
T Consensus       109 k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccCCcchhhhccCcc
Confidence            777888888888875

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.13  E-value=0.55  Score=24.53  Aligned_cols=15  Identities=33%  Similarity=0.461  Sum_probs=7.0

Q ss_pred             CCCeeeccccccccc
Q psy12291        286 NLTALFLNNNLLRYL  300 (404)
Q Consensus       286 ~L~~L~l~~n~i~~~  300 (404)
                      +|+.|+++.|+|+.+
T Consensus         3 ~L~~L~L~~NkI~~I   17 (26)
T smart00365        3 NLEELDLSQNKIKKI   17 (26)
T ss_pred             ccCEEECCCCcccee
Confidence            444444444444433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.35  E-value=0.26  Score=25.03  Aligned_cols=11  Identities=45%  Similarity=0.537  Sum_probs=3.5

Q ss_pred             CCeeecccccc
Q psy12291        287 LTALFLNNNLL  297 (404)
Q Consensus       287 L~~L~l~~n~i  297 (404)
                      |++|+|++|+|
T Consensus         4 L~~L~l~~n~i   14 (24)
T PF13516_consen    4 LETLDLSNNQI   14 (24)
T ss_dssp             -SEEE-TSSBE
T ss_pred             CCEEEccCCcC
Confidence            33344443333

...

>KOG3763|consensus

Probab=83.93  E-value=0.5  Score=44.81  Aligned_cols=12  Identities=42%  Similarity=0.451  Sum_probs=7.9

Q ss_pred             CCcEEEccCCcc
Q psy12291        334 NLITLKLAKNPW  345 (404)
Q Consensus       334 ~L~~l~l~~Np~  345 (404)
                      .|++|.+.|||.
T Consensus       271 ~Leel~l~GNPl  282 (585)
T KOG3763|consen  271 PLEELVLEGNPL  282 (585)
T ss_pred             CHHHeeecCCcc
Confidence            456666777776

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.68  E-value=0.93  Score=23.59  Aligned_cols=18  Identities=33%  Similarity=0.471  Sum_probs=13.1

Q ss_pred             CCCcEEeCCCCCCcccCc
Q psy12291        309 LHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       309 ~~L~~L~l~~n~l~~~~~  326 (404)
                      ++|+.|++++|+++.+|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467778888888777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	404
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-27
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-27
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		2e-24
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		4e-21
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		4e-23
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		5e-22
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-23
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		6e-22
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-22
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		5e-22
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-22
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-22
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-21
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-21
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-20
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		6e-19
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		8e-18
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-17
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-15
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-17
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-09
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-17
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-09
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		5e-17
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		3e-13
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-16
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-16
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-12
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		9e-16
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		1e-10
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-15
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		5e-10
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		2e-15
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		3e-15
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-10
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		3e-15
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-10
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		3e-15
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-10
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		3e-15
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		2e-10
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-15
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		9e-10
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		4e-15
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		8e-10
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		4e-15
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		8e-10
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		4e-15
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		8e-10
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		5e-15
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		6e-15
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		7e-15
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		7e-15
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		9e-15
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		1e-14
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		4e-14
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-13
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		9e-08
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-13
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		8e-08
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-13
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-07
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		6e-13
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		8e-13
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-12
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		2e-12
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		1e-11
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-11
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		1e-07
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		1e-11
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-11
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		2e-08
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		2e-11
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		3e-11
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		4e-06
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		8e-11
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		2e-04
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		2e-10
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		5e-04
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		3e-10
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		7e-10
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		7e-07
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		9e-10
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		4e-09
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		2e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-09
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		4e-09
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		4e-09
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		6e-09
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-08
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-04
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-08
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		2e-08
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		6e-05
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-08
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-08
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		5e-08
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		8e-08
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		7e-08
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-08
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		9e-08
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		9e-08
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		4e-07
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		5e-07
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		9e-06
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		6e-05
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		1e-05
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		7e-05
3rez_A	129	Glycoprotein Gpib Variant Length = 129		1e-05
4ecn_A	876	Crystal Structure Of A Leucine-Rich Repeat Protein		2e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		3e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		4e-05
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		4e-05
3rfe_A	130	Crystal Structure Of Glycoprotein Gpib Ectodomain L		7e-05
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		9e-05
2ifg_A	347	Structure Of The Extracellular Segment Of Human Trk		2e-04

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 166/370 (44%), Gaps = 28/370 (7%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C ++    +P  + IP + R++DLG N++ TL++D F     L EL+L +N +S +    
Sbjct: 18  CHRKRFVAVP--EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
           F +  NL T+ L  N +K +P   F G   LT + +S N I  L   +F DL +L+ L++
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
             N L  I +  FSG+ SL++L L+   +  +P      L  L  L LR+  ++ IR   
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195
Query: 209 FNYFKHLTFLELSE---------NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
           F     L  LE+S          N +  LN      LTSL   H     +  +P  +  +
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLN------LTSLSITHCN---LTAVPYLAVRH 246
Query: 260 LQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSN 319
           L  L  L L  N I  +                       ++  AF  + +L+ L +  N
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306
Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM--ARW-LRANRRKVWDSKPTCRGPG 376
           +L  L       + NL TL L  NP  CDC +L++   RW L  NR+     +PTC  P 
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQ-----QPTCATPE 361
Query: 377 NLGGKSVEDM 386
            + GK  +D 
Sbjct: 362 FVQGKEFKDF 371

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           V  S   + ++P+N+  D    ++LDL  N L+S+    F  +  L+ L L  N++  LP
Sbjct: 21  VDCSSKKLTAIPSNIPADT---KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
            GIF +LK L+ L + +N+L  +  G+F+   +L  L L  N + SL    F  LT L  
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
           L LG N ++++P G F  L SL++L LY+N ++ +                         
Sbjct: 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG---------------------- 175
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLR 359
             AF+ +  LK L+LD+N+L+ +   +   L  L  L+L +NPW C C  I+YMA+WL+
Sbjct: 176 --AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/244 (31%), Positives = 126/244 (51%), Gaps = 5/244 (2%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C ++++ E+P    I  + R+++L  NQ+  +  ++F  L  L  L+L +NH+  +    
Sbjct: 50  CVRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA 107
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
           F    NL+T++L  N + T+P+  F    +L  + L  N IES+P+  F+ + SL  LDL
Sbjct: 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL 167
Query: 149 SQ-NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
            +   L+ I  G F G+ +L+ L L    + ++P      L  LD L L  N LS IRPG
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPG 225
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
            F    HL  L + ++ I  +  + F  L SL E++L  N +  +P   F  L  LE++ 
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
Query: 268 LYSN 271
           L+ N
Sbjct: 286 LHHN 289

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 127/291 (43%), Gaps = 51/291 (17%)
Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
           ++ L  N I+ +  N F  L  LE L LS+N + +I+ G F+G+ +L  L+L  NR+  +
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 181 PPGIFDDLKYLDFLSLRNN-------------------------RLSFIRPGLFNYFKHL 215
           P G F  L  L  L LRNN                         RLS+I  G F    +L
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
            +L L+   +  +     + L  L EL L  N++  I  GSF  L  L+KL++  + IQ 
Sbjct: 188 RYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ- 244
Query: 276 LHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
                                   ++  AF+ +  L ++ L  N L  L  D  + L +L
Sbjct: 245 -----------------------VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
Query: 336 ITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM 386
             + L  NPW+C+C IL+++ W++            C  P NL G+ + ++
Sbjct: 282 ERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGEL 332

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score =  105 bits (263), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 5/244 (2%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C ++++ E+P    IPV+ R ++L  N +  +  D F  L  L  L+L KN + ++    
Sbjct: 21  CTRRELAEVPAS--IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGA 78
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
           F    +L+T++L  N + T+P+  F+   +L  + L  N IES+P+  F+ + SL  LDL
Sbjct: 79  FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 149 SQ-NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
            +   L  I    F G+ +L+ L L    +  +P      L  L+ L L  NRL  IRPG
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPG 196
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
            F     L  L L    ++++  + F  L SL+EL+L  N + ++P   F  L  LE++ 
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVH 256
Query: 268 LYSN 271
           L  N
Sbjct: 257 LNHN 260

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 3/266 (1%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           + L  N+I+ +  + F  L  LE L LS+N++  I+ G F+G+ SL  L+L  NR+  +P
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE-NWISSLNGDEFSQLTSLK 240
              F+ L  L  L LRNN +  I    FN    L  L+L E   +  ++   F  L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYL 300
            L+LG   ++ IP  +   L  LE+L L  N +  +                       +
Sbjct: 160 YLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRA 360
           +  AF+ +  L++L L  N L  L  D  + L  L  + L  NPWHC+C +L+++ WL+ 
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
Query: 361 NRRKVWDSKPTCRGPGNLGGKSVEDM 386
                      C  P  L G+ + ++
Sbjct: 278 TVPSNTTCCARCHAPAGLKGRYIGEL 303

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 5/244 (2%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C ++++ E+P    IPV+ R ++L  N +  +  D F  L  L  L+L KN + ++    
Sbjct: 21  CTRRELAEVPAS--IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGA 78
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
           F    +L+T++L  N + T+P+  F+   +L  + L  N IES+P+  F+ + SL  LDL
Sbjct: 79  FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 149 SQ-NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
            +   L  I    F G+ +L+ L L    +  +P      L  L+ L L  NRL  IRPG
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPG 196
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
            F     L  L L    ++++  + F  L SL+EL+L  N + ++P   F  L  LE++ 
Sbjct: 197 SFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVH 256
Query: 268 LYSN 271
           L  N
Sbjct: 257 LNHN 260

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 123/266 (46%), Gaps = 3/266 (1%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           + L  N+I+ +  + F  L  LE L LS+N++  I+ G F+G+ SL  L+L  NR+  +P
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE-NWISSLNGDEFSQLTSLK 240
              F+ L  L  L LRNN +  I    FN    L  L+L E   +  ++   F  L +L+
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYL 300
            L+LG   ++ IP  +   L  LE+L L  N +  +                       +
Sbjct: 160 YLNLGMCNLKDIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRA 360
           +  AF+ +  L++L L  N L  L  D  + L  L  + L  NPWHC+C +L+++ WL+ 
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKE 277
Query: 361 NRRKVWDSKPTCRGPGNLGGKSVEDM 386
                      C  P  L G+ + ++
Sbjct: 278 TVPSNTTCCARCHAPAGLKGRYIGEL 303

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 124/271 (45%), Gaps = 6/271 (2%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           + L  N I+ + A+ F  L  LE L L +N +  I+ G F+G+ SL  L+L  N +  +P
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE-NWISSLNGDEFSQLTSLK 240
            G F+ L  L  L LRNN +  I    FN    L  L+L E   +  ++   F  L +LK
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYL 300
            L+LG   I+ +P  +   L  LE+L +  N+  E+                       +
Sbjct: 200 YLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRA 360
           +  AF+ +  L +L L  N L  L  D  + L  L+ L L  NPW+CDC IL++A WLR 
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE 317
Query: 361 NRRKVWDSKPTCRGPGNLGGK---SVEDMSF 388
                      C  P ++ G+    V+  SF
Sbjct: 318 YIPTNSTCCGRCHAPMHMRGRYLVEVDQASF 348

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 125/293 (42%), Gaps = 51/293 (17%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQY 158
           L  N I  +P+  F+    LT++ L  N +  + A  F  L  LE+LDLS N  L S+  
Sbjct: 38  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
            TF G+  L  L L    + +L PG+F  L  L +L L++N L  +    F    +LT L
Sbjct: 98  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHX 278
            L  N ISS+    F  L SL  L L QN +  +   +F +L  L  L+L++NN+     
Sbjct: 158 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--- 214
Query: 279 XXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338
                                L T+A  P+            LQY              L
Sbjct: 215 ---------------------LPTEALAPL----------RALQY--------------L 229
Query: 339 KLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
           +L  NPW CDC    +  WL+  R     S+  C  P  L G+ ++ ++ +DL
Sbjct: 230 RLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCSLPQRLAGRDLKRLAANDL 280

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 125/293 (42%), Gaps = 51/293 (17%)
Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQY 158
           L  N I  +P+  F+    LT++ L  N +  + A  F  L  LE+LDLS N  L S+  
Sbjct: 39  LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
            TF G+  L  L L    + +L PG+F  L  L +L L++N L  +    F    +LT L
Sbjct: 99  ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHX 278
            L  N ISS+    F  L SL  L L QN +  +   +F +L  L  L+L++NN+     
Sbjct: 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--- 215
Query: 279 XXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338
                                L T+A  P+            LQY              L
Sbjct: 216 ---------------------LPTEALAPL----------RALQY--------------L 230
Query: 339 KLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
           +L  NPW CDC    +  WL+  R     S+  C  P  L G+ ++ ++ +DL
Sbjct: 231 RLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCSLPQRLAGRDLKRLAANDL 281

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 130/308 (42%), Gaps = 30/308 (9%)
Query: 85  PGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
           PG          T    Q  ++ +P+     + R   + L  N I  +PA  F    +L 
Sbjct: 2   PGACVCYNEPKVTTSCPQQGLQAVPTGIPASSQR---IFLHGNRISYVPAASFQSCRNLT 58
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN-RINQLPPGIFDDLKYLDFLSLRNNRLSF 203
            L L  N L  I    F+G+  L++L L  N ++  + P  F  L +L  L L    L  
Sbjct: 59  ILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQE 118
Query: 204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
           + PGLF     L +L L +N + +L  + F  L +L  L L  N I ++P  +F  L SL
Sbjct: 119 LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSL 178
Query: 264 EKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQY 323
           ++L L+ N++  +H                          AF  +  L  L L +N L  
Sbjct: 179 DRLLLHQNHVARVH------------------------PHAFRDLGRLMTLYLFANNLSM 214
Query: 324 LATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
           L  + L  L +L  L+L  NPW CDC    +  WL+  R     S+  C  P  L G+ +
Sbjct: 215 LPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCNLPQRLAGRDL 272
Query: 384 EDMSFDDL 391
           + ++  DL
Sbjct: 273 KRLAASDL 280

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 113/248 (45%), Gaps = 52/248 (20%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           V     +++S+P+ +  D    E+LDL    L ++   TF G+  L  L L  N++  L 
Sbjct: 19  VDCQGKSLDSVPSGIPADT---EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
            G+FDDL  L  L L NN+L+ +  G+F++   L  L L  N + SL    F +LT LKE
Sbjct: 76  AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
           L L  N +++IPAG+F  L +L+ L L +N +Q +                         
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----------------------- 172
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD-CAILYMARWLRA 360
             AF+    L KLQ                     T+ L  N + C  C ILY+++W+R 
Sbjct: 173 -GAFD---RLGKLQ---------------------TITLFGNQFDCSRCEILYLSQWIRE 207
Query: 361 NRRKVWDS 368
           N  KV D 
Sbjct: 208 NSNKVKDG 215

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 112/248 (45%), Gaps = 52/248 (20%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           V     +++S+P+ +  D    E+LDL    L ++   TF G+  L  L L  N++  L 
Sbjct: 19  VDCQGKSLDSVPSGIPADT---EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
            G+FDDL  L  L L NN+L+ +  G+F++   L  L L  N + SL    F +LT LKE
Sbjct: 76  AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
           L L  N +++IPAG+F  L +L+ L L +N +Q +                         
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH----------------------- 172
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD-CAILYMARWLRA 360
             AF+    L KLQ                     T+ L  N + C  C  LY+++W+R 
Sbjct: 173 -GAFD---RLGKLQ---------------------TITLFGNQFDCSRCETLYLSQWIRE 207
Query: 361 NRRKVWDS 368
           N  KV D 
Sbjct: 208 NSNKVKDG 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 95/176 (53%), Gaps = 3/176 (1%)
Query: 33  DMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92
           D++ +   Q +P ++R + LG N+L  +S  A   L  LT L L  N L  LP  +F   
Sbjct: 52  DIKSVQGIQYLP-NVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 93  INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV 152
            NL  + L +N +++LP   F     LT + L++N ++SLP  VF  L +L ELDLS N 
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 153 LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
           L S+  G F  +  LK L+L  N++  +P G+FD L  L ++ L +N      PG+
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 224

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 16/182 (8%)
Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG-- 163
           +T+ +   K ++   V Q   N+I+ + AN   D+ S++ +      L +++Y    G  
Sbjct: 20  ETIKANLKKKSVTDAVTQNELNSIDQIIAN-NSDIKSVQGI----QYLPNVRYLALGGNK 74
Query: 164 ---------MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
                    + +L  L L  N++  LP G+FD L  L  L L  N+L  +  G+F+   +
Sbjct: 75  LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
           LT+L L+ N + SL    F +LT+L EL L  N ++++P G F  L  L+ L LY N ++
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 275 EL 276
            +
Sbjct: 195 SV 196

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 33  DMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92
           D++ +   Q +P ++R + LG N+L  +S  A   L  LT L L  N L  LP  +F   
Sbjct: 52  DIKSVQGIQYLP-NVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKL 108
Query: 93  INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV 152
            NL  + L +N +++LP   F     LT + L +N ++SLP  VF  L +L  LDL  N 
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQ 168
Query: 153 LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
           L S+  G F  +  LK+L L  N++  +P G+FD L  L  + L NN
Sbjct: 169 LQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/147 (36%), Positives = 83/147 (56%), Gaps = 6/147 (4%)
Query: 131 SLPANVFHDLISLEELD------LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
           +L  N  HD+ +L+EL       L+ N L S+  G F  + +LK L L  N++  LP G+
Sbjct: 69  ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 185 FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL 244
           FD L  L +L L +N+L  +  G+F+   +LT L+L  N + SL    F +LT LK+L L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSN 271
             N ++++P G F  L SL  ++L +N
Sbjct: 189 NDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
           +L+L  N+L  I         +LT+L L+ N + SL    F +LT+LKEL L +N ++++
Sbjct: 67  YLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 253 PAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLK 312
           P G F  L +L  L+LY N +Q L                     + L    F+ +  LK
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLK 184
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
           +L L+ N+L+ +       L +L  + L  NPW C C+ ILY++RW+
Sbjct: 185 QLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWI 231

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 24  IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE 83
           +  + C    +E++P D  +P D  ++DL  N+++ +    F  L  L  L L  N +S+
Sbjct: 33  LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 84  LPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL 143
           +    F   + L  + LS+N +K LP    K    L  +++  N I  +  +VF+ L  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQM 147
Query: 144 EELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
             ++L  N L S  I+ G F GM  L  +++    I  +P G+   L     L L  N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKI 204
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
           + +         +L  L LS N IS+++    +    L+ELHL  N +  +P G  A+ +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHK 263
Query: 262 SLEKLFLYSNNIQEL 276
            ++ ++L++NNI  +
Sbjct: 264 YIQVVYLHNNNISAI 278

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 29/236 (12%)
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
           P   F+    L VVQ S   +E +P ++  D   L   DL  N +T I+ G F  + +L 
Sbjct: 23  PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLH 79
Query: 169 RLKLQSNRINQLPPGIFDDL---------------------KYLDFLSLRNNRLSFIRPG 207
            L L +N+I+++ PG F  L                     K L  L +  N ++ +R  
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 139
Query: 208 LFNYFKHLTFLELSENWI--SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
           +FN    +  +EL  N +  S +    F  +  L  + +    I TIP G      SL +
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTE 196
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKL 321
           L L  N I ++                       +D  +     HL++L L++NKL
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 11/255 (4%)
Query: 24  IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE 83
           +  + C    +E++P D  +P D  ++DL  N+++ +    F  L  L  L L  N +S+
Sbjct: 33  LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 84  LPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL 143
           +    F   + L  + LS+N +K LP    K    L  +++  N I  +  +VF+ L  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPK---TLQELRVHENEITKVRKSVFNGLNQM 147
Query: 144 EELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
             ++L  N L S  I+ G F GM  L  +++    I  +P G+   L     L L  N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKI 204
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
           + +         +L  L LS N IS+++    +    L+ELHL  N +  +P G  A+ +
Sbjct: 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHK 263
Query: 262 SLEKLFLYSNNIQEL 276
            ++ ++L++NNI  +
Sbjct: 264 YIQVVYLHNNNISAI 278

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 29/236 (12%)
Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
           P   F+    L VVQ S   +E +P ++  D   L   DL  N +T I+ G F  + +L 
Sbjct: 23  PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLH 79
Query: 169 RLKLQSNRINQLPPGIFDDL---------------------KYLDFLSLRNNRLSFIRPG 207
            L L +N+I+++ PG F  L                     K L  L +  N ++ +R  
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 139
Query: 208 LFNYFKHLTFLELSENWI--SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
           +FN    +  +EL  N +  S +    F  +  L  + +    I TIP G      SL +
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTE 196
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKL 321
           L L  N I ++                       +D  +     HL++L L++NKL
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
            S  E+  +   LTS+  G  S   S  RL+L+SN++  LP G+FD L  L  LSL  N+
Sbjct: 7   CSGTEIRCNSKGLTSVPTGIPS---SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ 63
Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
           +  +  G+F+    LT L L EN + SL    F +LT LKEL L  N ++++P G F  L
Sbjct: 64  IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123
Query: 261 QSLEKLFLYSN 271
            SL+K++L++N
Sbjct: 124 TSLQKIWLHTN 134

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 74/162 (45%), Gaps = 26/162 (16%)
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
           T LEL  N + SL    F +LT L +L L QN I+++P G F  L  L  L+L+ N +Q 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 276 LHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
           L                            F+ +  LK+L LD+N+L+ +       L +L
Sbjct: 91  L------------------------PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126
Query: 336 ITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
             + L  NPW C C  I Y++RWL  N +K   S   C G G
Sbjct: 127 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGSG 167

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 2/159 (1%)
Query: 26  TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
           T+ C+ Q    +P    IP     +DL  N L +L    F  L  LT+L L  N L  LP
Sbjct: 11  TVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68
Query: 86  GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
             +F    +L+ ++LS N +++LP+  F    +L  + L+ N ++SLP  VF  L  L++
Sbjct: 69  NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD 128
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
           L L QN L S+  G F  + SL+ + L  N  +   PGI
Sbjct: 129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 167

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
           LDL  N L S+  G F  + SL +L L  N++  LP G+F+ L  L +L+L  N+L  + 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
            G+F+    L  L L+ N + SL    F +LT LK+L L QN ++++P G F  L SL+ 
Sbjct: 93  NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152
Query: 266 LFLYSN 271
           ++L+ N
Sbjct: 153 IWLHDN 158

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 85/190 (44%), Gaps = 28/190 (14%)
Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
           +P GI     YLD   L  N L  +  G+F+    LT L L  N + SL    F++LTSL
Sbjct: 22  VPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRY 299
             L+L  N ++++P G F  L  L++L L +N +Q L                       
Sbjct: 79  TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD--------------------- 117
Query: 300 LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWL 358
                F+ +  LK L+L  N+L+ +       L +L  + L  NPW C C  I Y++ W+
Sbjct: 118 ---GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
Query: 359 RANRRKVWDS 368
             +   V +S
Sbjct: 175 NKHSGVVRNS 184

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+D+  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRDLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
             G F 
Sbjct: 188 PKGFFG 193

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
           + +LP ++  D   L    LS+N+L +    T      L +L L    + +L   +   L
Sbjct: 22  LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
             L  L L +N+L  + P L      LT L++S N ++SL       L  L+EL+L  N 
Sbjct: 77  PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           ++T+P G       LEKL L +NN+ E                        L       +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
            +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+D+  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRDLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
             G F 
Sbjct: 188 PKGFFG 193

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
           + +LP ++  D   L    LS+N+L +    T      L +L L    + +L   +   L
Sbjct: 22  LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
             L  L L +N+L  + P L      LT L++S N ++SL       L  L+EL+L  N 
Sbjct: 77  PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           ++T+P G       LEKL L +N++ EL                               +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNDLTEL------------------------PAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
            +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 155/381 (40%), Gaps = 78/381 (20%)
Query: 49  VIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL--SELPGKLFISTINLSTMDLSQNLIK 106
           ++ L  NQ   L   AF GL  L  L L + +L  + L G  F    +L  + L  N IK
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142
Query: 107 TL-PSTFFKGAIRLTVVQLSYNAIES------------------LPANVFHDL------- 140
            + P++FF    R  V+ L++N ++S                  L +    D+       
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202
Query: 141 ---------ISLEELDLSQNVLTSIQYGTFSGMYSLKRLK--LQSNRINQLPPGIFDDLK 189
                     S+  LDLS N         F    +  +++  + SN  N        + K
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 190 YLDFLSLRNNRLSFIRP-------------GLFNYFKHLTFLELSENWISSLNGDEFSQL 236
             D  + +    S ++               +F++F  L  L L++N I+ ++ + F  L
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXX 296
           T L +L+L QN++ +I +  F NL  LE L L  N+I                       
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI----------------------- 359
Query: 297 XRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
            R L  ++F  + +LK+L LD+N+L+ +       L +L  + L  NPW C C  I Y++
Sbjct: 360 -RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 418
Query: 356 RWLRANRRKVWDSKPTCRGPG 376
           RWL  N +K   S   C G G
Sbjct: 419 RWLNKNSQKEQGS-AKCSGSG 438

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+++  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLF 209
             G F
Sbjct: 188 PKGFF 192

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
           + +LP ++  D   L    LS+N+L +    T      L +L L    + +L   +   L
Sbjct: 22  LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
             L  L L +N+L  + P L      LT L++S N ++SL       L  L+EL+L  N 
Sbjct: 77  PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           ++T+P G       LEKL L +NN+ E                        L       +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
            +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+++  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLF 209
             G F
Sbjct: 188 PKGFF 192

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
           + +LP ++  D   L    LS+N+L +    T      L +L L    + +L   +   L
Sbjct: 22  LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
             L  L L +N+L  + P L      LT L++S N ++SL       L  L+EL+L  N 
Sbjct: 77  PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           ++T+P G       LEKL L +NN+ E                        L       +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
            +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+++  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 16  VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 73
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 74  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 128
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L L+ N L  I
Sbjct: 129 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 188
Query: 205 RPGLF 209
             G F
Sbjct: 189 PKGFF 193

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
           + +LP ++  D   L    LS+N+L +    T      L +L L    + +L   +   L
Sbjct: 23  LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTL 77
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
             L  L L +N+L  + P L      LT L++S N ++SL       L  L+EL+L  N 
Sbjct: 78  PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 136
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           ++T+P G       LEKL L +NN+ E                        L       +
Sbjct: 137 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 172
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
            +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 173 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 229

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+++  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLF 209
             G F
Sbjct: 188 PKGFF 192

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 99/240 (41%), Gaps = 35/240 (14%)
Query: 129 IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL 188
           + +LP ++  D   L    LS+N+L +    T      L +L L    + +L   +   L
Sbjct: 22  LTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTL 76
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
             L  L L +N+L  + P L      LT L++S N ++SL       L  L+EL+L  N 
Sbjct: 77  PVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           ++T+P G       LEKL L +NN+ E                        L       +
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANNNLTE------------------------LPAGLLNGL 171
Query: 309 LHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
            +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 172 ENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+ +  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N++ +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
             G F 
Sbjct: 188 PKGFFG 193

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
           L LS+N+L +    T      L +L L    + +L   +   L  L  L L +N+L  + 
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
           P L      LT L++S N ++SL       L  L+EL+L  N ++T+P G       LEK
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
           L L +N + EL                               + +L  L L  N L  + 
Sbjct: 153 LSLANNQLTEL------------------------PAGLLNGLENLDTLLLQENSLYTIP 188
Query: 326 TDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
                  LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 189 KGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+ +  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N++ +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
             G F 
Sbjct: 188 PKGFFG 193

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 91/223 (40%), Gaps = 32/223 (14%)
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
           L LS+N+L +    T      L +L L    + +L   +   L  L  L L +N+L  + 
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--QVDGTLPVLGTLDLSHNQLQSL- 92
Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
           P L      LT L++S N ++SL       L  L+EL+L  N ++T+P G       LEK
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 266 LFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
           L L +N + EL                               + +L  L L  N L  + 
Sbjct: 153 LSLANNQLTEL------------------------PAGLLNGLENLDTLLLQENSLYTIP 188
Query: 326 TDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
                  LLP      L  NPW C+C ILY  RWL+ N   V+
Sbjct: 189 KGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQDNAENVY 228

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+ +  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N++ +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
             G F 
Sbjct: 188 PKGFFG 193

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           V      + +LP ++  D   L    LS+N+L +    T      L +L L    + +L 
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL- 70
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
             +   L  L  L L +N+L  + P L      LT L++S N ++SL       L  L+E
Sbjct: 71  -QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
           L+L  N ++T+P G       LEKL L +N + EL                         
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL------------------------P 164
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLR 359
                 + +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQ 221
Query: 360 ANRRKVW 366
            N   V+
Sbjct: 222 DNAENVY 228

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP- 85
           ++C K+ +  LP D  +P D  ++ L  N L T S        +LT+L L +  L++L  
Sbjct: 15  VNCDKRQLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQV 72
Query: 86  -GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE 144
            G L +    L T+DLS N +++LP    +    LTV+ +S+N + SLP      L  L+
Sbjct: 73  DGTLPV----LGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           EL L  N L ++  G  +    L++L L +N++ +LP G+ + L+ LD L L+ N L  I
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 205 RPGLFN 210
             G F 
Sbjct: 188 PKGFFG 193

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           V      + +LP ++  D   L    LS+N+L +    T      L +L L    + +L 
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNLDRCELTKL- 70
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
             +   L  L  L L +N+L  + P L      LT L++S N ++SL       L  L+E
Sbjct: 71  -QVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLD 301
           L+L  N ++T+P G       LEKL L +N + EL                         
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL------------------------P 164
Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLS--LLPNLITLKLAKNPWHCDCAILYMARWLR 359
                 + +L  L L  N L  +        LLP      L  NPW C+C ILY  RWL+
Sbjct: 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF---LHGNPWLCNCEILYFRRWLQ 221
Query: 360 ANRRKVW 366
            N   V+
Sbjct: 222 DNAENVY 228

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
            V  ++Y  +E     +P N+     S + LDLS N L  +   +F     L+ L L   
Sbjct: 8   VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRC 64
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
            I  +  G +  L +L  L L  N +  +  G F+    L  L   E  ++SL       
Sbjct: 65  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 124
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
           L +LKEL++  N I++      F+NL +LE L L SN IQ ++                 
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
                   ++   AF+  + LK+L LD+N+L+ +       L +L  + L  NPW C C 
Sbjct: 185 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
            I Y++RWL  N +K   S   C G G
Sbjct: 244 RIDYLSRWLNKNSQKEQGSA-KCSGSG 269

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
            V  ++Y  +E     +P N+     S + LDLS N L  +   +F     L+ L L   
Sbjct: 7   VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRC 63
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
            I  +  G +  L +L  L L  N +  +  G F+    L  L   E  ++SL       
Sbjct: 64  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 123
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
           L +LKEL++  N I++      F+NL +LE L L SN IQ ++                 
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
                   ++   AF+  + LK+L LD+N+L+ +       L +L  + L  NPW C C 
Sbjct: 184 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
            I Y++RWL  N +K   S   C G G
Sbjct: 243 RIDYLSRWLNKNSQKEQGSA-KCSGSG 268

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 12/255 (4%)
Query: 24  IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE 83
           +  + C    ++ +P  +I P D  ++DL  N +S L KD F GL  L  L L  N +S+
Sbjct: 35  LRVVQCSDLGLKAVP-KEISP-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 84  LPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL 143
           +  K F     L  + +S+N +  +P       + L   ++  N I  +P  VF  L ++
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL---RIHDNRIRKVPKGVFSGLRNM 149
Query: 144 EELDLSQNVL--TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
             +++  N L  +  + G F G+  L  L++   ++  +P    D  + L+ L L +N++
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKI 205
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
             I       +  L  L L  N I  +     S L +L+ELHL  N +  +PAG   +L+
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLK 264
Query: 262 SLEKLFLYSNNIQEL 276
            L+ ++L++NNI ++
Sbjct: 265 LLQVVYLHTNNITKV 279

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
            V  ++Y  +E     +P N+     S + LDLS N L  +   +F     L+ L L   
Sbjct: 6   VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
            I  +  G +  L +L  L L  N +  +  G F+    L  L   E  ++SL       
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
           L +LKEL++  N I++      F+NL +LE L L SN IQ ++                 
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
                   ++   AF+  + LK+L LD+N+L+ +       L +L  + L  NPW C C 
Sbjct: 183 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
            I Y++RWL  N +K   S   C G G
Sbjct: 242 RIDYLSRWLNKNSQKEQGSA-KCSGSG 267

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 8/241 (3%)
Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
           S + LDLS N L  +   +F     L+ L L    I  +  G +  L +L  L L  N +
Sbjct: 30  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS-FANL 260
             +  G F+    L  L   E  ++SL       L +LKEL++  N I++      F+NL
Sbjct: 90  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 261 QSLEKLFLYSNNIQELHXX----XXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQL 316
            +LE L L SN IQ ++                         ++   AF+  + LK+L L
Sbjct: 150 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELAL 208
Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGP 375
           D+N+L+ +       L +L  + L  NPW C C  I Y++RWL  N +K   S   C G 
Sbjct: 209 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 267
Query: 376 G 376
           G
Sbjct: 268 G 268

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 116/267 (43%), Gaps = 15/267 (5%)
Query: 120 TVVQLSYNAIE----SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
            V  ++Y  +E     +P N+     S + LDLS N L  +   +F     L+ L L   
Sbjct: 8   VVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 64
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
            I  +  G +  L +L  L L  N +  +  G F+    L  L   E  ++SL       
Sbjct: 65  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGH 124
Query: 236 LTSLKELHLGQNYIETIPAGS-FANLQSLEKLFLYSNNIQELHXX----XXXXXXXXXXX 290
           L +LKEL++  N I++      F+NL +LE L L SN IQ ++                 
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 184
Query: 291 XXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA 350
                   ++   AF+  + LK+L LD+N+L+ +       L +L  + L  NPW C C 
Sbjct: 185 DLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 243
Query: 351 -ILYMARWLRANRRKVWDSKPTCRGPG 376
            I Y++RWL  N +K   S   C G G
Sbjct: 244 RIDYLSRWLNKNSQKEQGSA-KCSGSG 269

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 33/204 (16%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           +  +S R   +P GI  + +    L L +N+++ + PG+F+   +L  L L  N + +L 
Sbjct: 24  VDCRSKRHASVPAGIPTNAQ---ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXX 289
              F  LT L  L LG N +  +P+  F  L  L++LF+  N + EL             
Sbjct: 81  VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL------------- 127
Query: 290 XXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC 349
                        +  E + HL  L LD N+L+ +   +   L +L    L  NPW C+C
Sbjct: 128 ------------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175
Query: 350 A-ILYMARWLRANRRKV---WDSK 369
             I+Y+  W+ A+   +   WD K
Sbjct: 176 RDIMYLRNWV-ADHTSIAMRWDGK 198

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 39/282 (13%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C    + ++P D  +P +I V++L  NQL  L    FT   +LT L +  N +S+L  +L
Sbjct: 21  CSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 78
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
                 L  ++L  N +  L    F     LT + L  N+I+ +  N F    +L  LDL
Sbjct: 79  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 138
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
           S N L+S + GT                               SLK+L+L SN+I +  P
Sbjct: 139 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 198
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
           G F  +  L  L L N +L    P L            +  L LS + +S+ +   F  L
Sbjct: 199 GCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 255
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
             T+L  L L  N +  +   SFA L  LE  FL  NNIQ L
Sbjct: 256 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 297

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 132/343 (38%), Gaps = 63/343 (18%)
Query: 57  LSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI-KTLPSTFF 113
           L TL+ + F  L    L  L L KN +S++    F    +L  +DL  N I + L    +
Sbjct: 377 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 436
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--FSGMYSLKRLK 171
           +G   +  + LSYN    L  N F  + SL+ L L +  L ++      F  + +L  L 
Sbjct: 437 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 496
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI----RPGLFNYF----KHLTFLELSEN 223
           L +N I  +   + + L+ L+ L L++N L+ +     PG   YF     HL  L L  N
Sbjct: 497 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 556
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXX 283
               +  + F  L  LK + LG N + T+PA  F N  SL+ L L  N I          
Sbjct: 557 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-------- 608
Query: 284 XXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
                           ++ K F P                          NL  L +  N
Sbjct: 609 ----------------VEKKVFGPAFR-----------------------NLTELDMRFN 629
Query: 344 PWHCDC-AILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSV 383
           P+ C C +I +   W+      + +  S   C  P +  G  V
Sbjct: 630 PFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 672

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 39/282 (13%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C    + ++P D  +P +I V++L  NQL  L    FT   +LT L +  N +S+L  +L
Sbjct: 11  CSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
                 L  ++L  N +  L    F     LT + L  N+I+ +  N F    +L  LDL
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
           S N L+S + GT                               SLK+L+L SN+I +  P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
           G F  +  L  L L N +L    P L            +  L LS + +S+ +   F  L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
             T+L  L L  N +  +   SFA L  LE  FL  NNIQ L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 132/343 (38%), Gaps = 63/343 (18%)
Query: 57  LSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI-KTLPSTFF 113
           L TL+ + F  L    L  L L KN +S++    F    +L  +DL  N I + L    +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--FSGMYSLKRLK 171
           +G   +  + LSYN    L  N F  + SL+ L L +  L ++      F  + +L  L 
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI----RPGLFNYF----KHLTFLELSEN 223
           L +N I  +   + + L+ L+ L L++N L+ +     PG   YF     HL  L L  N
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXX 283
               +  + F  L  LK + LG N + T+PA  F N  SL+ L L  N I          
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-------- 598
Query: 284 XXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
                           ++ K F P                          NL  L +  N
Sbjct: 599 ----------------VEKKVFGPAFR-----------------------NLTELDMRFN 619
Query: 344 PWHCDC-AILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSV 383
           P+ C C +I +   W+      + +  S   C  P +  G  V
Sbjct: 620 PFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 662

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 120/282 (42%), Gaps = 39/282 (13%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C    + ++P D  +P +I V++L  NQL  L    FT   +LT L +  N +S+L  +L
Sbjct: 16  CSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 73
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
                 L  ++L  N +  L    F     LT + L  N+I+ +  N F    +L  LDL
Sbjct: 74  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 133
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
           S N L+S + GT                               SLK+L+L SN+I +  P
Sbjct: 134 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
           G F  +  L  L L N +L    P L            +  L LS + +S+ +   F  L
Sbjct: 194 GCFHAIGRLFGLFLNNVQLG---PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 250
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
             T+L  L L  N +  +   SFA L  LE  FL  NNIQ L
Sbjct: 251 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 292

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 132/343 (38%), Gaps = 63/343 (18%)
Query: 57  LSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI-KTLPSTFF 113
           L TL+ + F  L    L  L L KN +S++    F    +L  +DL  N I + L    +
Sbjct: 372 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 431
Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT--FSGMYSLKRLK 171
           +G   +  + LSYN    L  N F  + SL+ L L +  L ++      F  + +L  L 
Sbjct: 432 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 491
Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI----RPGLFNYF----KHLTFLELSEN 223
           L +N I  +   + + L+ L+ L L++N L+ +     PG   YF     HL  L L  N
Sbjct: 492 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 551
Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXX 283
               +  + F  L  LK + LG N + T+PA  F N  SL+ L L  N I          
Sbjct: 552 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS-------- 603
Query: 284 XXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
                           ++ K F P                          NL  L +  N
Sbjct: 604 ----------------VEKKVFGPAFR-----------------------NLTELDMRFN 624
Query: 344 PWHCDC-AILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSV 383
           P+ C C +I +   W+      + +  S   C  P +  G  V
Sbjct: 625 PFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPV 667

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
           N  + +T + L +N I  +    FS    L+ + L  N I  +   +F  L+SL  L LY
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 270 SNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
            N I EL                       L   AF+ + +L  L L  NKLQ +A  + 
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
           S L  + T+ LA+NP+ CDC + ++A +L  N   +  S   C  P  L  K +
Sbjct: 149 SPLRAIQTMHLAQNPFICDCHLKWLADYLHTN--PIETSGARCTSPRRLANKRI 200

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
           N  + +T + L +N I  +    FS    L+ + L  N I  +   +F  L+SL  L LY
Sbjct: 29  NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 270 SNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
            N I EL                       L   AF+ + +L  L L  NKLQ +A  + 
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
           S L  + T+ LA+NP+ CDC + ++A +L  N   +  S   C  P  L  K +
Sbjct: 149 SPLRAIQTMHLAQNPFICDCHLKWLADYLHTN--PIETSGARCTSPRRLANKRI 200

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 122/282 (43%), Gaps = 39/282 (13%)
Query: 29  CWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL 88
           C    +  +P D  +P +I V++L  NQL  L    FT   +L  L    N +S+L  +L
Sbjct: 11  CSHLKLTHIPDD--LPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
                 L  ++L  N +  +    F     LT + L  N+I  + +N F +  +L +LDL
Sbjct: 69  CQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDL 128
Query: 149 SQNVLTSIQYGT--------------------------FSGMYSLKRLKLQSNRINQLPP 182
           S N L+S + GT                          F G  SL++L L SN + +  P
Sbjct: 129 SHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSP 188
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYF------KHLTFLELSENWISSLNGDEFSQL 236
           G F  +  L  L L N +L+   P L            +  L L+ N + + +   FS L
Sbjct: 189 GCFQTIGKLFALLLNNAQLN---PHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGL 245
Query: 237 --TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
             T+L +L L  N +  +  GSF+ L SL  L L  NNIQ L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRL 287

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 148/370 (40%), Gaps = 20/370 (5%)
Query: 32  QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS 91
           +D+    F+ +  + +  I+L  +    +S + F     L EL L   HLSELP  L   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL--- 297
Query: 92  TINLSTMD---LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELD 147
            + LST+    LS N  + L          LT + +  N     L      +L +L ELD
Sbjct: 298 -VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356
Query: 148 LSQNVLTSIQYGTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
           LS + + +          +  L+ L L  N    L    F +   L+ L L   RL    
Sbjct: 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416
Query: 206 P-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA---NLQ 261
               F     L  L LS + +   +   F  L +L+ L+L  N+    P G+     +LQ
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF---PKGNIQKTNSLQ 473
Query: 262 SLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKK--LQLDSN 319
           +L +L +   +  +L                       L + + E + HLK   L L SN
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN 533
Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPT-CRGPGNL 378
            +  +    L +L    T+ L +NP  C C+ +Y   W + N +K+ D++ T C  P  L
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLL 593
Query: 379 GGKSVEDMSF 388
            G  + D++ 
Sbjct: 594 RGVRLSDVTL 603

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 162/396 (40%), Gaps = 73/396 (18%)
Query: 39  FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYK--LTELKLRKNHLSELPGKLFISTINLS 96
           F  I+   I     G + +    ++ F GL +  +  L L    +  L  ++F +  +L 
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293
Query: 97  TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
            ++L+ N I  +    F G   L V+ LSYN +  L ++ F+ L  +  +DL +N +  I
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 157 QYGTFSGMYSLKRLKLQSNR---INQLP--PGIF---DDLKYLDFLSLRNNRLSFIRPGL 208
           Q  TF  +  L+ L L+ N    I+ +P  P IF   + L  L  ++L  N +      L
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 209 FN----YF----KHLTFLELSENWISSLNGDEF-SQLTSLKELHLGQNYIE-----TIPA 254
            N    YF     HL  L L++N  SS +GD+  S+  SL++L LG+N ++      +  
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473
Query: 255 GSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKL 314
             F  L  L+ L+L  N +                          L    F  +  L+ L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNS------------------------LPPGVFSHLTALRGL 509
Query: 315 QLDSNKLQYLATDSLS-------------LLPN------LITLKLAKNPWHCDCAILYMA 355
            L+SN+L  L+ + L              L PN      L  L +  N + C+C +    
Sbjct: 510 SLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFI 569
Query: 356 RWLRANRRKVWDSKPT----CRGPGNLGGKSVEDMS 387
            WL  N   V  + P     C  P +  G S+  +S
Sbjct: 570 NWL--NHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 98/183 (53%), Gaps = 7/183 (3%)
Query: 94  NLSTMDLSQNLI--KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
           +L  +DLS+N +  K   S    G   L  + LS+N + ++ +N F  L  LE LD   +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406
Query: 152 VLTSI-QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL--SFIRPGL 208
            L  + ++  F  + +L  L +          GIF+ L  L+ L +  N    +F+ P +
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDI 465
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
           F   ++LTFL+LS+  +  L+   F+ L+SL+ L++  N ++++P G F  L SL+K++L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWL 525
Query: 269 YSN 271
           ++N
Sbjct: 526 HTN 528

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 104/254 (40%), Gaps = 33/254 (12%)
Query: 153 LTSIQYGTFSGMY--SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN 210
           L + ++G F  +   SLKRL   SN+       +  DL  L+FL L  N LSF      +
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 211 YF--KHLTFLELSENWISSLNGD---------------------EFSQLTSLKEL-HLGQ 246
            F    L +L+LS N + +++ +                     EFS   SL+ L +L  
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 247 NYIETIPA--GSFANLQSLEKLFLYSNNIQE-LHXXXXXXXXXXXXXXXXXXXXRYLDTK 303
           ++  T  A  G F  L SLE L +  N+ QE                         L   
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 304 AFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANR 362
           AF  +  L+ L + SN+L+ +       L +L  + L  NPW C C  I Y++RWL  N 
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS 548
Query: 363 RKVWDSKPTCRGPG 376
           +K   S   C G G
Sbjct: 549 QKEQGSA-KCSGSG 561

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFS 234
           ++N++P  I    +Y   L L NN  + +   G+F     L  +  S N I+ +    F 
Sbjct: 22  KLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78
Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXX 294
             + + E+ L  N +E +    F  L+SL+ L L SN I                     
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-------------------- 118
Query: 295 XXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM 354
                +   +F  +  ++ L L  N++  +A  +   L +L TL L  NP++C+C + ++
Sbjct: 119 ----CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL 174
Query: 355 ARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
             WLR  ++++    P C+ P  L    ++D++  D 
Sbjct: 175 GEWLR--KKRIVTGNPRCQKPYFLKEIPIQDVAIQDF 209

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 7/229 (3%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--EL 84
           + C  + +  +P    IP     ++L  N+L +L    F  L +LT+L L  N LS    
Sbjct: 12  IRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 85  PGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISL 143
             +    T +L  +DLS N + T+ S F  G  +L  +   ++ ++ +   +VF  L +L
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 144 EELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLS 202
             LD+S         G F+G+ SL+ LK+  N   +   P IF +L+ L FL L   +L 
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251
            + P  FN    L  L +S N   SL+   +  L SL+ L    N+I T
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 132/318 (41%), Gaps = 34/318 (10%)
Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
           TE++     L+ +P  +  S   L   +L  N +++LP   F    +LT + LS N +  
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 132 LPANVFHDL--ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDL 188
                  D    SL+ LDLS N + ++    F G+  L+ L  Q + + Q+    +F  L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHLGQN 247
           + L +L + +        G+FN    L  L+++ N +  +   D F++L +L  L L Q 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEP 307
            +E +   +F +L SL+ L +  NN   L                        DT  ++ 
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSL------------------------DTFPYKC 221
Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPN-LITLKLAKNPWHCDCAILYMARWLRANRRKVW 366
           +  L+ L    N +       L   P+ L  L L +N + C C      +W++  R+ + 
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281
Query: 367 D-SKPTCRGPGNLGGKSV 383
           +  +  C  P +  G  V
Sbjct: 282 EVERMECATPSDKQGMPV 299

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 138/349 (39%), Gaps = 62/349 (17%)
Query: 49  VIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL--SELPGKLFISTINLSTMDLSQNLIK 106
           ++ L  NQ   L   AF GL  L  L L + +L  + L G  F    +L  + L  N IK
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142
Query: 107 TL-PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI--------- 156
            + P++FF    R  V+ L++N ++S+      DL++ +    +   L+SI         
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICE---EDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 157 ----QYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNY 211
               + G      S+  L L  N   + +    FD +      SL       I    +N 
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL-------ILSNSYNM 252
Query: 212 ---FKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
              F H  F +        L      + + +K   L ++ I  +    F++   LE+L L
Sbjct: 253 GSSFGHTNFKDPDNFTFKGL------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306
Query: 269 YSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS 328
             N I ++                        D  AF  + HLK+L LD+N+L+ +    
Sbjct: 307 AQNEINKI------------------------DDNAFWGLTHLKELALDTNQLKSVPDGI 342
Query: 329 LSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
              L +L  + L  NPW C C  I Y++RWL  N +K   S   C G G
Sbjct: 343 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 390

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/204 (32%), Positives = 94/204 (46%), Gaps = 15/204 (7%)
Query: 27  LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKD-AFTGLYKLTELKLRKNHLSELP 85
           LSC KQ +  +P  Q +P    ++DL  N LS L  +   T L  L  L L  NHL+ + 
Sbjct: 23  LSCSKQQLPNVP--QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 86  GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
            + F+   NL  +DLS N + TL    F     L V+ L  N I  +  N F D+  L++
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQK 140
Query: 146 LDLSQNVLTSIQYGTFSGMYSLKR---LKLQSNRINQLPPGIFDDLKYL-----DFLSLR 197
           L LSQN ++            L +   L L SN++ +LP     DL+ L     + L L 
Sbjct: 141 LYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLYLH 197
Query: 198 NNRLSFIRPGLFNYFKHLTFLELS 221
           NN L      L+  F H  + +LS
Sbjct: 198 NNPLE-CDCKLYQLFSHWQYRQLS 220

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 188 LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
           L  L  L L +N L+FI    F    +L +L+LS N + +L+   FS L +L+ L L  N
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEP 307
           +I  +   +F ++  L+KL+L  N I                             K    
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL---------------------IKDGNK 161
Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPNLIT--LKLAKNPWHCDCAI 351
           +  L  L L SNKL+ L    L  LP  +   L L  NP  CDC +
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           +  Q+ R+  +P GI  D + L    L NN+++ + PG+F++  +L  L  + N ++++ 
Sbjct: 17  VNCQNIRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
              F +LT L +L L  N++++IP G+F NL+SL  ++LY+N
Sbjct: 74  TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 27/136 (19%)
Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXX 296
           T  + L L  N I  +  G F +L +L++L+  SN +  +                    
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-------------------- 72
Query: 297 XRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
                T  F+ +  L +L L+ N L+ +   +   L +L  + L  NPW C+C  I+Y+ 
Sbjct: 73  ----PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128
Query: 356 RWLRANRRKV--WDSK 369
            W+  +   V  WD K
Sbjct: 129 NWVADHTSIVMRWDGK 144

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 121/294 (41%), Gaps = 43/294 (14%)
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
           N I+ LP   F+    LTV+ L  N + SLP  +FH+   L  L +S N L  I+  TF 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 163 GMYSLKRLKLQSNRINQ----LPPGIFD-DLKY-----------LDFLSLRNNRLSFIRP 206
              SL+ L+L SNR+      L P +F  ++ Y           ++ L   +N ++ +R 
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR- 221
Query: 207 GLFNYFKHLTFLELSEN------WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
           G  N    LT L+L  N      W+ +  G        L E+ L  N +E I    F  +
Sbjct: 222 GPVNV--ELTILKLQHNNLTDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKM 271
Query: 261 QSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPML-HLKKLQLDSN 319
           Q LE+L++ +N +  L+                      L  +  +P    L+ L LD N
Sbjct: 272 QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN 328
Query: 320 KLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR 373
               + T  LS    L  L L+ N W C+      A +    R  V D+   C+
Sbjct: 329 S---IVTLKLSTHHTLKNLTLSHNDWDCNSL---RALFRNVARPAVDDADQHCK 376

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 33/229 (14%)
Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
           K +  +++ + +LP  + D  + ++ L+L + ++  I    F Y   +  L +  N I  
Sbjct: 48  KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 107
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXX 287
           L    F  +  L  L L +N + ++P G F N   L  L + +NN++             
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER------------ 155
Query: 288 XXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
                       ++   F+    L+ LQL SN+L ++    LSL+P+L    ++ N    
Sbjct: 156 ------------IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL-S 199
Query: 348 DCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQW 396
             AI      L A+     +S    RGP N+   ++  +  ++L +  W
Sbjct: 200 TLAIPIAVEELDASH----NSINVVRGPVNV-ELTILKLQHNNLTDTAW 243

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 126/300 (42%), Gaps = 55/300 (18%)
Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
           N I+ LP   F+    LTV+ L  N + SLP  +FH+   L  L +S N L  I+  TF 
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 163 GMYSLKRLKLQSNRINQ----LPPGIFD-DLKY-----------LDFLSLRNNRLSFIRP 206
              SL+ L+L SNR+      L P +F  ++ Y           ++ L   +N ++ +R 
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR- 227
Query: 207 GLFNYFKHLTFLELSEN------WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
           G  N    LT L+L  N      W+ +  G        L E+ L  N +E I    F  +
Sbjct: 228 GPVNV--ELTILKLQHNNLTDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKM 277
Query: 261 QSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNK 320
           Q LE+L++ +N +  L+                    + LD  +   +LH+++ Q   ++
Sbjct: 278 QRLERLYISNNRLVALN-----------LYGQPIPTLKVLDL-SHNHLLHVERNQPQFDR 325
Query: 321 LQYLATD-------SLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR 373
           L+ L  D        LS    L  L L+ N W C+      A +    R  V D+   C+
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNS---LRALFRNVARPAVDDADQHCK 382

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
           S N+  +I       ++ LKR +  + R+  +P  +  D++ L  L LR N +  +   L
Sbjct: 107 SDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHL 165
Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
           F+  ++L  +E   N +  +    F ++  LK+L+L  N ++++P G F  L SL+K++L
Sbjct: 166 FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWL 225
Query: 269 YSN 271
           ++N
Sbjct: 226 HTN 228

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 3/162 (1%)
Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
           T +  S+N   ++      +L  LK        +  IPA    ++++L  L L +N I+E
Sbjct: 102 TLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEE 160
Query: 276 LHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
           +                     R +    F  M  LK+L L SN+L+ +       L +L
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSL 220
Query: 336 ITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
             + L  NPW C C  I Y++RWL  N +K   S   C G G
Sbjct: 221 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGSG 261

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 130/311 (41%), Gaps = 24/311 (7%)
Query: 81  LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
           L+ +P  L   T  + ++DLS N I  + ++  +  + L  + L+ N I ++  + F  L
Sbjct: 43  LNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL-PPGIFDDLKYLDFLSLRNN 199
            SLE LDLS N L+++    F  + SL  L L  N    L    +F  L  L  L +  N
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV-GN 158
Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE-----LHLGQNYIETIPA 254
             +F +    + F  LTFLE  E   S L   E   L S++      LH+ Q+    +  
Sbjct: 159 MDTFTKIQRKD-FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI---LLL 214
Query: 255 GSFANL-QSLEKLFLYSNNIQELH-XXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLK 312
             F ++  S+E L L   ++   H                     +  D   F+ M  L 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274
Query: 313 K------LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKV 365
           +      L+   N+L+ +       L +L  + L  NPW C C  I Y++RWL  N +K 
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 334
Query: 366 WDSKPTCRGPG 376
             S   C G G
Sbjct: 335 QGS-AKCSGSG 344

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
            L L +NR++ + PG+F+    LT L+L  N ++ L    F +LT L +L L  N +++I
Sbjct: 34  VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 253 PAGSFANLQSLEKLFLYSN 271
           P G+F NL+SL  ++L +N
Sbjct: 94  PRGAFDNLRSLTHIWLLNN 112

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           + ++P G     Q    L+LY N I +L                       L    F+ +
Sbjct: 21  LASVPTGIPTTTQ---VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
             L +L L+ N+L+ +   +   L +L  + L  NPW C C+ ILY++RW+
Sbjct: 78  TQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWI 128

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
           +++D+ +N            L  LT L L  N ++++ P K   +  NL+ ++LS N I 
Sbjct: 86  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            + +    G   L  +  S N +  L      +L +LE LD+S N ++ I     + + +
Sbjct: 143 DISA--LSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTN 196
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
           L+ L   +N+I+ + P GI   L  LD LSL  N+L  I  G      +LT L+L+ N I
Sbjct: 197 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 251
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
           S+L     S LT L EL LG N I  I   AG                    +NL++L  
Sbjct: 252 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 266 LFLYSNNIQELH 277
           L LY NNI ++ 
Sbjct: 310 LTLYFNNISDIS 321

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
           +++D+ +N            L  LT L L  N ++++ P K   +  NL+ ++LS N I 
Sbjct: 86  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            + +    G   L  +  S N +  L      +L +LE LD+S N ++ I     + + +
Sbjct: 143 DISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTN 196
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
           L+ L   +N+I+ + P GI   L  LD LSL  N+L  I  G      +LT L+L+ N I
Sbjct: 197 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 251
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
           S+L     S LT L EL LG N I  I   AG                    +NL++L  
Sbjct: 252 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 266 LFLYSNNIQELH 277
           L LY NNI ++ 
Sbjct: 310 LTLYFNNISDIS 321

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 116/252 (46%), Gaps = 38/252 (15%)
Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
           +++D+ +N            L  LT L L  N ++++ P K   +  NL+ ++LS N I 
Sbjct: 86  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            + +    G   L  +  S N +  L      +L +LE LD+S N ++ I     + + +
Sbjct: 143 DISA--LSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLTN 196
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
           L+ L   +N+I+ + P GI   L  LD LSL  N+L  I  G      +LT L+L+ N I
Sbjct: 197 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 251
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
           S+L     S LT L EL LG N I  I   AG                    +NL++L  
Sbjct: 252 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 309
Query: 266 LFLYSNNIQELH 277
           L LY NNI ++ 
Sbjct: 310 LTLYFNNISDIS 321

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           +  Q   +  +P GI    +    L L  N+++ + PG+F+    LT+L L+ N +++L 
Sbjct: 24  VNCQERSLASVPAGIPTTTQ---VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALP 80
Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
              F +LT L  L L  N +++IP G F NL+SL  ++L++N
Sbjct: 81  VGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
            L L +N+++ + PG+F+    LT L+L  N ++ L    F +LT L +L L  N +++I
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 253 PAGSFANLQSLEKLFLYSN 271
           P G+F NL+SL  ++L +N
Sbjct: 94  PRGAFDNLKSLTHIWLLNN 112

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           + ++P G     Q    L+LY N I +L                       L    F+ +
Sbjct: 21  LASVPTGIPTTTQ---VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
             L +L L+ N+L+ +   +   L +L  + L  NPW C C+ ILY++RW+
Sbjct: 78  TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 128

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
            L L +N+++ + PG+F+    LT L+L  N ++ L    F +LT L +L L  N +++I
Sbjct: 42  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
Query: 253 PAGSFANLQSLEKLFLYSN 271
           P G+F NL+SL  ++L +N
Sbjct: 102 PRGAFDNLKSLTHIWLLNN 120

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPM 308
           + ++P G     Q    L+LY N I +L                       L    F+ +
Sbjct: 29  LASVPTGIPTTTQ---VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 85
Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
             L +L L+ N+L+ +   +   L +L  + L  NPW C C+ ILY++RW+
Sbjct: 86  TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 90  ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDL 148
             TI+L  +DLS N + T+ S F  G  +L  +   ++ ++ +   +VF  L +L  LD+
Sbjct: 394 FGTISLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPG 207
           S         G F+G+ SL+ LK+  N   +   P IF +L+ L FL L   +L  + P 
Sbjct: 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Query: 208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251
            FN    L  L +S N   SL+   +  L SL+ L    N+I T
Sbjct: 513 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 55/284 (19%)
Query: 139 DLISLEELDLSQNVLT-------------SIQY------------GTFSGMYSLKRLKLQ 173
           DL SLE LDLS+N L+             S++Y              F G+  L+ L  Q
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 428
Query: 174 SNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGD 231
            + + Q+    +F  L+ L +L + +        G+FN    L  L+++ N +  +   D
Sbjct: 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 488
Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXX 291
            F++L +L  L L Q  +E +   +F +L SL+ L +  NN                   
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---------------- 532
Query: 292 XXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNPWHCDCA 350
                   LDT  ++ +  L+ L    N +       L   P +L  L L +N + C C 
Sbjct: 533 --------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584
Query: 351 ILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
                +W++  R+ + +  +  C  P +  G  V  +S +  C+
Sbjct: 585 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV--LSLNITCQ 626

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 58/214 (27%)
Query: 170 LKLQSNRINQLPPGIFDDLK--YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
           ++  +  +  LP GI  D+   YLD      N+ + +   L NY KHLT ++LS N IS+
Sbjct: 15  VRCSNKGLKVLPKGIPRDVTELYLD-----GNQFTLVPKELSNY-KHLTLIDLSNNRIST 68
Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXX 287
           L+   FS +T L  L L  N +  IP                                  
Sbjct: 69  LSNQSFSNMTQLLTLILSYNRLRCIPP--------------------------------- 95
Query: 288 XXXXXXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
                          + F+ +  L+ L L  N +  +   + + L  L  L +  NP +C
Sbjct: 96  ---------------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140
Query: 348 DCAILYMARWLRANRRKVWDSKPTCRGPGNLGGK 381
           DC + +++ W+++  ++   ++  C GPG +  K
Sbjct: 141 DCNMQWLSDWVKSEYKEPGIAR--CAGPGEMADK 172

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 41/253 (16%)
Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
           +++D+ +N            L  LT L L  N ++++ P K   +  NL+ ++LS N I 
Sbjct: 90  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 146
Query: 107 TLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
            + +    G   L   QLS+ N +  L      +L +LE LD+S N ++ I     + + 
Sbjct: 147 DISA--LSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLT 198
Query: 166 SLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
           +L+ L   +N+I+ + P GI   L  LD LSL  N+L  I  G      +LT L+L+ N 
Sbjct: 199 NLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 253
Query: 225 ISSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLE 264
           IS+L     S LT L EL LG N I  I   AG                    +NL++L 
Sbjct: 254 ISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 311
Query: 265 KLFLYSNNIQELH 277
            L LY NNI ++ 
Sbjct: 312 YLTLYFNNISDIS 324

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 118/253 (46%), Gaps = 41/253 (16%)
Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
           +++D+ +N            L  LT L L  N ++++ P K   +  NL+ ++LS N I 
Sbjct: 91  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 147
Query: 107 TLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
            + +    G   L   QLS+ N +  L      +L +LE LD+S N ++ I     + + 
Sbjct: 148 DISA--LSGLTSLQ--QLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV--LAKLT 199
Query: 166 SLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
           +L+ L   +N+I+ + P GI   L  LD LSL  N+L  I  G      +LT L+L+ N 
Sbjct: 200 NLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254
Query: 225 ISSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLE 264
           IS+L     S LT L EL LG N I  I   AG                    +NL++L 
Sbjct: 255 ISNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 312
Query: 265 KLFLYSNNIQELH 277
            L LY NNI ++ 
Sbjct: 313 YLTLYFNNISDIS 325

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 47/89 (52%)
Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL 242
           G+F  L +L  L L+ N+L+ I P  F    H+  L+L EN I  ++   F  L  LK L
Sbjct: 48  GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107
Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           +L  N I  +  GSF +L SL  L L SN
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 73/199 (36%), Gaps = 56/199 (28%)
Query: 194 LSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
           L L +N L  I   GLF    HL  LEL  N ++ +  + F   + ++EL LG+N I+ I
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 253 PAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLK 312
               F  L  L+ L LY N I                                       
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQI--------------------------------------- 114
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
                      +   S   L +L +L LA NP++C+C + + A WLR  ++ +      C
Sbjct: 115 ---------SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLR--KKSLNGGAARC 163
Query: 373 RGPGNLGGKSVEDMSFDDL 391
             P       V D+   DL
Sbjct: 164 GAP-----SKVRDVQIKDL 177

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 39/252 (15%)
Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
           +++D+ +N            L  LT L L  N ++++ P K   +  NL+ ++LS N I 
Sbjct: 86  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            + +    G   L  +       +  P     +L +LE LD+S N ++ I     + + +
Sbjct: 143 DISA--LSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISV--LAKLTN 195
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
           L+ L   +N+I+ + P GI   L  LD LSL  N+L  I  G      +LT L+L+ N I
Sbjct: 196 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 250
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
           S+L     S LT L EL LG N I  I   AG                    +NL++L  
Sbjct: 251 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 308
Query: 266 LFLYSNNIQELH 277
           L LY NNI ++ 
Sbjct: 309 LTLYFNNISDIS 320

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 12/139 (8%)
Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
           L +L+EL L+ N L  I  GT + + +L  L L +N+I+ L P     L  L  L L  N
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 270
Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI-PAGSFA 258
           ++S I P        LT LEL+EN +  +     S L +L  L L  N I  I P  S  
Sbjct: 271 QISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLT 326
Query: 259 NLQSLEKLFLYSNNIQELH 277
            LQ   +LF Y+N + ++ 
Sbjct: 327 KLQ---RLFFYNNKVSDVS 342

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 114/252 (45%), Gaps = 39/252 (15%)
Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIK 106
           +++D+ +N            L  LT L L  N ++++ P K   +  NL+ ++LS N I 
Sbjct: 86  KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELSSNTIS 142
Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            + +    G   L  +       +  P     +L +LE LD+S N ++ I     + + +
Sbjct: 143 DISA--LSGLTSLQQLNFGNQVTDLKP---LANLTTLERLDISSNKVSDISV--LAKLTN 195
Query: 167 LKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
           L+ L   +N+I+ + P GI   L  LD LSL  N+L  I  G      +LT L+L+ N I
Sbjct: 196 LESLIATNNQISDITPLGI---LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 250
Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIP--AG------------------SFANLQSLEK 265
           S+L     S LT L EL LG N I  I   AG                    +NL++L  
Sbjct: 251 SNL--APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 308
Query: 266 LFLYSNNIQELH 277
           L LY NNI ++ 
Sbjct: 309 LTLYFNNISDIS 320

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 3/162 (1%)
Query: 92  TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQ 150
           T +L  +DLS N + T+ S F  G  +L  +   ++ ++ +   +VF  L +L  LD+S 
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 151 NVLTSIQYGTFSGMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPGLF 209
                   G F+G+ SL+ LK+  N   +   P IF +L+ L FL L   +L  + P  F
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET 251
           N    L  L +S N   SL+   +  L SL+ L    N+I T
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 114/284 (40%), Gaps = 55/284 (19%)
Query: 139 DLISLEELDLSQNVL-------------TSIQY------------GTFSGMYSLKRLKLQ 173
           DL SLE LDLS+N L             TS++Y              F G+  L+ L  Q
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 174 SNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGD 231
            + + Q+    +F  L+ L +L + +        G+FN    L  L+++ N +  +   D
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXX 291
            F++L +L  L L Q  +E +   +F +L SL+ L +  NN                   
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---------------- 508
Query: 292 XXXXXXRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNPWHCDCA 350
                   LDT  ++ +  L+ L    N +       L   P +L  L L +N + C C 
Sbjct: 509 --------LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
Query: 351 ILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
                +W++  R+ + +  +  C  P +  G  V  +S +  C+
Sbjct: 561 HQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV--LSLNITCQ 602

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 146/374 (39%), Gaps = 32/374 (8%)
Query: 32  QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG----- 86
           +D+       +  + +  ++L  ++ S +S   F    +L EL L   HL  LP      
Sbjct: 238 EDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGL 297
Query: 87  ----KLFISTINLSTM-DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI 141
               KL +S  +   +  +S     +L   + +G ++   + L    +E L         
Sbjct: 298 NLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVK--KLHLGVGCLEKLG-------- 347
Query: 142 SLEELDLSQNVLTSIQYGTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
           +L+ LDLS N + +    +     +  L+ L L  N    L    F +   L+ L L   
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 200 RLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE--TIPAGS 256
           RL    P   F     L  L L+  ++ + N    + L  L+ L+L  N+ +  TI   +
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN 467
Query: 257 F-ANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKK-- 313
               + SLE L L S  +  +                       L   + + + HLK   
Sbjct: 468 LLQTVGSLEVLILSSCGLLSI---DQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIY 524
Query: 314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTC 372
           L L +N +  ++   L +L    T+ L+ NP  C C+ ++   W + N  K+  S + TC
Sbjct: 525 LNLAANSINIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTC 584
Query: 373 RGPGNLGGKSVEDM 386
             P +L G  + D+
Sbjct: 585 ANPPSLRGVKLSDV 598

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 143/367 (38%), Gaps = 32/367 (8%)
Query: 39  FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG------KLFIST 92
           F+ +  + +  I+L  ++ S LS   F    ++ EL L   HL+ LP        L    
Sbjct: 247 FEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLV 306
Query: 93  INLSTMD-LSQNLIKTLPST---FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
           +N ++ D L Q    + PS    + KG +R   + L    +E L         +L++LDL
Sbjct: 307 LNANSFDQLCQINAASFPSLRDLYIKGNMR--KLDLGTRCLEKLE--------NLQKLDL 356
Query: 149 SQNVLTSIQYGTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206
           S + + +          +  L+ L L  N    L    F +   L+ L +    L    P
Sbjct: 357 SHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
Query: 207 -GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ---S 262
              F     L  L LS   + + N    + L  L+ L+L  N  +         LQ   S
Sbjct: 417 HSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGS 476
Query: 263 LEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKLQLD--SNK 320
           LE L L S N+  +                       L   + + + HLK L L+  SN 
Sbjct: 477 LEILILSSCNLLSI---DQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNN 533
Query: 321 LQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDS-KPTCRGPGNLG 379
           ++ +    L  L     + L+ NP  C C+ ++   W + N  K+ DS + TC  P +L 
Sbjct: 534 IRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPPSLR 593
Query: 380 GKSVEDM 386
           G  + D+
Sbjct: 594 GVKLSDV 600

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query: 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG 230
           K  S  +N +P G+ + +K LD   L NNR+++I         +L  L L+ N I+++  
Sbjct: 11  KGSSGSLNSIPSGLTEAVKSLD---LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 67
Query: 231 DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHXXXXXXXXXXXXX 290
           D FS L SL+ L L  NY+  + +  F  L SL  L L  N  + L              
Sbjct: 68  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 127
Query: 291 XXXXXXXRY--LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
                   +  +  K F  +  L++L++D++ LQ     SL  + N+
Sbjct: 128 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 174

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 81  LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
           LS++P  +  ST N+   DLS N +K L S  F     L  + LS   IE++    +H L
Sbjct: 18  LSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 74
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
             L  L L+ N + S   G+FSG+ SL+ L     ++  L       L  L  L++ +N 
Sbjct: 75  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 134
Query: 201 LSFIR-PGLFNYFKHLTFLELSENWISSLNGDE 232
           +   + P  F+   +L  ++LS N+I ++  ++
Sbjct: 135 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 167

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 27/157 (17%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           + LS+N ++ L +  F +   L+ LDLS+  + +I+   + G++ L  L L  N I    
Sbjct: 32  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
           PG F  L      SL N                   L   E  ++SL      QL +LK+
Sbjct: 92  PGSFSGLT-----SLEN-------------------LVAVETKLASLESFPIGQLITLKK 127
Query: 242 LHLGQNYIET--IPAGSFANLQSLEKLFLYSNNIQEL 276
           L++  N+I +  +PA  F+NL +L  + L  N IQ +
Sbjct: 128 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 163

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 81  LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
           LS++P  +  ST N+   DLS N +K L S  F     L  + LS   IE++    +H L
Sbjct: 23  LSKVPDDIPSSTKNI---DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79
Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
             L  L L+ N + S   G+FSG+ SL+ L     ++  L       L  L  L++ +N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139
Query: 201 LSFIR-PGLFNYFKHLTFLELSENWISSLNGDE 232
           +   + P  F+   +L  ++LS N+I ++  ++
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 27/157 (17%)
Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           + LS+N ++ L +  F +   L+ LDLS+  + +I+   + G++ L  L L  N I    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
           PG F  L      SL N                   L   E  ++SL      QL +LK+
Sbjct: 97  PGSFSGLT-----SLEN-------------------LVAVETKLASLESFPIGQLITLKK 132
Query: 242 LHLGQNYIET--IPAGSFANLQSLEKLFLYSNNIQEL 276
           L++  N+I +  +PA  F+NL +L  + L  N IQ +
Sbjct: 133 LNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 168

>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant Length = 129

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL--RANRRKVWDSKP 370
           +L L  N L  +   +   LP L T  L  NPW CDC++ Y+  WL  R  R    D + 
Sbjct: 34  ELVLTGNNLTSVPPGAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAPYRDLR- 92
Query: 371 TCRGPGNLGGKSVEDMSFDDL 391
            C  P  L G+ +  ++ D+L
Sbjct: 93  -CVAPPALRGRLLPYLAEDEL 112

>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein (Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.80 A Resolution Length = 876

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 85/211 (40%), Gaps = 47/211 (22%)
Query: 33  DMEELPFDQIIP--VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI 90
           ++EE P    +   V + ++D   N++  L  +AF    KLT+LKL  N + E+P     
Sbjct: 559 NLEEFPASASLQKXVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCA 616
Query: 91  STINLSTMDLSQNLIKTLPSTF-------------------------------FKGAIRL 119
            T  +  +  S N +K +P+ F                               +KG I  
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYKG-INA 675
Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-------QYGTFSGMYSLKRLKL 172
           + V LSYN I+  P  +F     +  + LS N+ TSI       + G +   Y L  + L
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDL 735
Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSF 203
           + N++  L     DD +      L N  +S+
Sbjct: 736 RFNKLTSLS----DDFRATTLPYLSNXDVSY 762

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
           R    + +P  L   T  + ++DLS N I  +     +    L V+ L  + I ++  + 
Sbjct: 39  RSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 95
Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLS 195
           F+ L SLE LDLS N L+S+    F  + SLK L L  N    L    +F +L  L  L 
Sbjct: 96  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 155
Query: 196 LRN-NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243
           + N    S IR   F     L  LE+      SL   +   L S++++H
Sbjct: 156 IGNVETFSEIRRIDFAGLTSLNELEIKA---LSLRNYQSQSLKSIRDIH 201

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
           TSI  G  + M   K L L  N+I  +  G       L  L L+++R++ I    F    
Sbjct: 44  TSIPSGLTAAM---KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS-FANLQSLEKL 266
            L  L+LS+N +SSL+   F  L+SLK L+L  N  +T+   S F NL +L+ L
Sbjct: 101 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 33/243 (13%)
Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL--SFIR-PGLFNYFKHLT 216
            +S +  +KR+ ++++++  +P      LK L+FL L  N +   +++       +  L 
Sbjct: 331 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 390
Query: 217 FLELSENWISSL--NGDEFSQLTSLKELHLGQNYIETIPAGS-------FANL------- 260
            L LS+N + S+   G+    L +L  L + +N    +P          F NL       
Sbjct: 391 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 450
Query: 261 ------QSLEKLFLYSNNIQELHXXXXXXXXXXXXXXXXXXXXRYLDTKAFEPMLHLKKL 314
                 Q+LE L + +NN+                        + L   +  P+L + K+
Sbjct: 451 VKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKI 506
Query: 315 QLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCR 373
              SN+L+ +       L +L  + L  NPW C C  I Y++RWL  N +K   S   C 
Sbjct: 507 A--SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCS 563
Query: 374 GPG 376
           G G
Sbjct: 564 GSG 566

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
           R    + +P  L   T  + ++DLS N I  +     +    L V+ L  + I ++  + 
Sbjct: 13  RSRSFTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLS 195
           F+ L SLE LDLS N L+S+    F  + SLK L L  N    L    +F +L  L  L 
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 196 LRN-NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243
           + N    S IR   F     L  LE+      SL   +   L S++++H
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKA---LSLRNYQSQSLKSIRDIH 175

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
           TSI  G  + M   K L L  N+I  +  G       L  L L+++R++ I    F    
Sbjct: 18  TSIPSGLTAAM---KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS-FANLQSLEKL 266
            L  L+LS+N +SSL+   F  L+SLK L+L  N  +T+   S F NL +L+ L
Sbjct: 75  SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain Length = 130

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 35/79 (44%)
Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
           +L L  N L  L    L  LP L T  L  NPW CDC ++ +  WL     +       C
Sbjct: 35  ELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRDLRC 94
Query: 373 RGPGNLGGKSVEDMSFDDL 391
             P  L G+ +  ++ D+L
Sbjct: 95  VAPPALRGRLLPYLAEDEL 113

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 46  DIRVIDLGINQLSTLSKDA--FTGLYKLTELKLRKNHLSELPGKLFIS-TINLSTMDLSQ 102
           ++  + L +NQL  LSK A   T +  L +L + +N +S    K   S T +L ++++S 
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 103 NLIKTLPSTFFKG-AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTF 161
           N+   L  T F+    R+ V+ L  N I+S+P  V   L +L+EL+++ N L S+  G F
Sbjct: 409 NI---LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIF 464
Query: 162 SGMYSLKRLKLQSN 175
             + SL+++ L +N
Sbjct: 465 DRLTSLQKIWLHTN 478

>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In Complex With Nerve Growth Factor Length = 347

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 298 RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARW 357
           R++   AF     L +L L  N L+ L+  ++  L +L  L L+ NP HC CA+ ++ RW
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRW 127
Query: 358 LRANRRKVWDSKPTCRGPGNL 378
                  V + K  C G G L
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPL 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	404
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-114
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-90
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-90
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-59
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-51
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-30
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-45
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-77
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-56
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-46
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-59
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-30
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-70
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-70
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-64
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-63
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-45
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-31
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-63
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-52
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-60
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-58
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-51
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-44
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-57
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-53
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-43
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-50
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-50
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-36
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-50
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-43
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-32
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-44
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-42
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-44
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-37
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-42
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-43
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-33
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-43
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-32
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-36
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-35
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-32
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-30
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-29
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-27
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-32
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-29
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-26
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-31
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-25
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-21
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-20
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-18
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-23
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-20
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-30
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-30
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-26
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-26
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-23
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-21
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	4e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	5e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-17
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-18
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	3e-10
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	9e-08
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  341 bits (876), Expect = e-114
 Identities = 106/380 (27%), Positives = 166/380 (43%), Gaps = 4/380 (1%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
           C   C C  +   + C ++    +P    IP + R++DLG N++ TL++D F     L E
Sbjct: 3   CPPRCECSAQDRAVLCHRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
           L+L +N +S +    F +  NL T+ L  N +K +P   F G   LT + +S N I  L 
Sbjct: 61  LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120

Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
             +F DL +L+ L++  N L  I +  FSG+ SL++L L+   +  +P      L  L  
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP 253
           L LR+  ++ IR   F     L  LE+S                +L  L +    +  +P
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240

Query: 254 AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKK 313
             +  +L  L  L L  N I  +       L  L  + L    L  ++  AF  + +L+ 
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR 373
           L +  N+L  L       + NL TL L  NP  CDC +L++ R            +PTC 
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFN--RQQPTCA 358

Query: 374 GPGNLGGKSVEDMSFDDLCE 393
            P  + GK  +D     L  
Sbjct: 359 TPEFVQGKEFKDFPDVLLPN 378

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  279 bits (715), Expect = 2e-90
 Identities = 90/302 (29%), Positives = 144/302 (47%), Gaps = 7/302 (2%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
             S +  ++  +  +P            + L  N I+ + A+ F  L  LE L L +N +
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
             I+ G F+G+ SL  L+L  N +  +P G F+ L  L  L LRNN +  I    FN   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171

Query: 214 HLTFLELSE-NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
            L  L+L E   +  ++   F  L +LK L+LG   I+ +P      L  LE+L +  N+
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNH 229

Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
             E+  G+F GL++L  L++ N+ +  ++  AF+ +  L +L L  N L  L  D  + L
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 333 PNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL- 391
             L+ L L  NPW+CDC IL++A WLR            C  P ++ G+ + ++      
Sbjct: 290 RYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQ 349

Query: 392 CE 393
           C 
Sbjct: 350 CS 351

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  278 bits (713), Expect = 3e-90
 Identities = 84/302 (27%), Positives = 146/302 (48%), Gaps = 7/302 (2%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
             S +   +  ++ +P           ++ L  N I+ +  N F  L  LE L LS+N +
Sbjct: 44  QFSKVICVRKNLREVPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
            +I+ G F+G+ +L  L+L  NR+  +P G F  L  L  L LRNN +  I    FN   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 214 HLTFLELSE-NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
            L  L+L E   +S ++   F  L++L+ L+L    +  IP      L  L++L L  N+
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNH 218

Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
           +  +  G+F GL +L  L++  + ++ ++  AF+ +  L ++ L  N L  L  D  + L
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 333 PNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL- 391
            +L  + L  NPW+C+C IL+++ W++            C  P NL G+ + ++  +   
Sbjct: 279 HHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFT 338

Query: 392 CE 393
           C 
Sbjct: 339 CY 340

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  254 bits (652), Expect = 4e-83
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 6/273 (2%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
                    ++++P  +       + + L  N ++ +   +F    +L  L L SN + +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 180 LPPGIFDDLKYLDFLSL-RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
           +    F  L  L+ L L  N +L  + P  F+    L  L L    +  L    F  L +
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
           L+ L+L  N ++ +P  +F +L +L  LFL+ N I  +    F GL +L  L L+ N + 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL 358
           ++   AF  +  L  L L +N L  L T++L+ L  L  L+L  NPW CDC    +  WL
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250

Query: 359 RANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL 391
           +  R     S+  C  P  L G+ ++ ++ +DL
Sbjct: 251 QKFRGSS--SEVPCSLPQRLAGRDLKRLAANDL 281

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  192 bits (491), Expect = 5e-59
 Identities = 72/236 (30%), Positives = 109/236 (46%), Gaps = 4/236 (1%)

Query: 14  CEGPCRCRPE-IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
           C G C C  E   T SC +Q ++ +P    IP   + I L  N++S +   +F     LT
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLT 59

Query: 73  ELKLRKNHLSELPGKLFISTINLSTMDLSQNL-IKTLPSTFFKGAIRLTVVQLSYNAIES 131
            L L  N L+ +    F     L  +DLS N  ++++    F G  RL  + L    ++ 
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
           L   +F  L +L+ L L  N L ++   TF  + +L  L L  NRI+ +P   F  L  L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
           D L L  NR++ + P  F     L  L L  N +S+L  +  + L +L+ L L  N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  247 bits (633), Expect = 7e-79
 Identities = 83/359 (23%), Positives = 142/359 (39%), Gaps = 29/359 (8%)

Query: 37  LPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS 96
             F+ I   + +++    + +  L         ++  L L    + E+    F     + 
Sbjct: 37  FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 97  TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
            + +  N I+ LP   F+    LTV+ L  N + SLP  +FH+   L  L +S N L  I
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156

Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF----------------LSLRNNR 200
           +  TF    SL+ L+L SNR+  +   +   L + +                 L   +N 
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS 216

Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
           ++ +R  +      LT L+L  N ++            L E+ L  N +E I    F  +
Sbjct: 217 INVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 261 QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK 320
           Q LE+L++ +N +  L+      +  L  L L++N L +++    +    L+ L LD N 
Sbjct: 272 QRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNS 329

Query: 321 LQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLG 379
           +  L    LS    L  L L+ N W C+             R  V D+   C+    L 
Sbjct: 330 IVTL---KLSTHHTLKNLTLSHNDWDCNSLRALFRNV---ARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  176 bits (448), Expect = 1e-51
 Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 21/260 (8%)

Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
           +                    +V    + +  LPA +      +E L+L+   +  I   
Sbjct: 28  IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY 87

Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
            F+  +++++L +  N I  LPP +F ++  L  L L  N LS +  G+F+    LT L 
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147

Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ----------------SL 263
           +S N +  +  D F   TSL+ L L  N +  +      +L                 ++
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207

Query: 264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
           E+L    N+I  +          LT L L +N L             L ++ L  N+L+ 
Sbjct: 208 EELDASHNSINVVRGPVN---VELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEK 262

Query: 324 LATDSLSLLPNLITLKLAKN 343
           +       +  L  L ++ N
Sbjct: 263 IMYHPFVKMQRLERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  163 bits (414), Expect = 1e-46
 Identities = 47/262 (17%), Positives = 86/262 (32%), Gaps = 26/262 (9%)

Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH-----DLISLEELDLSQNVLTSIQ 157
           N+    P      +            I+    +V+       L + + +    + +  + 
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 61

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
                    ++ L L   +I ++    F     +  L +  N + ++ P +F     LT 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L L  N +SSL    F     L  L +  N +E I   +F    SL+ L L SN +  + 
Sbjct: 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181

Query: 278 AGTFAGL----------------TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
                 L                  +  L  ++N +  +        + L  L+L  N L
Sbjct: 182 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNL 238

Query: 322 QYLATDSLSLLPNLITLKLAKN 343
                  L   P L+ + L+ N
Sbjct: 239 TDT--AWLLNYPGLVEVDLSYN 258

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  247 bits (632), Expect = 5e-78
 Identities = 97/359 (27%), Positives = 148/359 (41%), Gaps = 30/359 (8%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSE--LPGKLFISTINLSTMDLSQNL 104
           + ++ L  NQ   L   AF GL  L  L L + +L    L G  F    +L  + L  N 
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 105 IKTL-PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLIS--LEELDLSQNVLTSI----- 156
           IK + P++FF    R  V+ L++N ++S+      +        L LS   L  +     
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 157 ---QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL-------------SLRNNR 200
              + G      S+  L L  N   +     F D      +             S  +  
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 201 LSFIRPGLFNYFK--HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
                   F   +   +   +LS++ I +L    FS  T L++L L QN I  I   +F 
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
            L  L KL L  N +  + +  F  L  L  L L+ N +R L  ++F  + +LK+L LD+
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 319 NKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
           N+L+ +       L +L  + L  NPW C C  I Y++RWL  N +K   S   C G G
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 438

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  120 bits (302), Expect = 2e-30
 Identities = 43/141 (30%), Positives = 60/141 (42%), Gaps = 4/141 (2%)

Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET-IPAGSFANLQSLEKLFLYSNN 272
           H+ +++LS N I+ LN   FS+L  L+ L + Q      I   +F  L SL  L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 273 IQELHAGTFAGLTNLTALFLNNNLLR--YLDTKAFEPMLHLKKLQLDSNKLQYLATDSL- 329
             +L  G F GL NL  L L    L    L    F+P+  L+ L L  N ++ +   S  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 330 SLLPNLITLKLAKNPWHCDCA 350
             +     L L  N     C 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  118 bits (298), Expect = 9e-30
 Identities = 42/144 (29%), Positives = 75/144 (52%)

Query: 32  QDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS 91
           +D +   F  +    ++  DL  +++  L K  F+    L +L L +N ++++    F  
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 92  TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
             +L  ++LSQN + ++ S  F+   +L V+ LSYN I +L    F  L +L+EL L  N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

Query: 152 VLTSIQYGTFSGMYSLKRLKLQSN 175
            L S+  G F  + SL+++ L +N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  243 bits (622), Expect = 5e-78
 Identities = 79/314 (25%), Positives = 146/314 (46%), Gaps = 19/314 (6%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           P RC+  +  + C    +E++P D  +P D  ++DL  N+++ +    F  L  L  L L
Sbjct: 26  PFRCQCHLRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
             N +S++    F   + L  + LS+N +K LP    K    L  +++  N I  +  +V
Sbjct: 84  INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSV 140

Query: 137 FHDLISLEELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194
           F+ L  +  ++L  N L S  I+ G F GM  L  +++    I  +P G+   L  L   
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH-- 198

Query: 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
            L  N+++ +         +L  L LS N IS+++    +    L+ELHL  N +  +P 
Sbjct: 199 -LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257

Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFA------GLTNLTALFLNNNLLRY--LDTKAFE 306
           G  A+ + ++ ++L++NNI  + +  F          + + + L +N ++Y  +    F 
Sbjct: 258 G-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

Query: 307 PMLHLKKLQLDSNK 320
            +     +QL + K
Sbjct: 317 CVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  202 bits (516), Expect = 3e-62
 Identities = 64/253 (25%), Positives = 111/253 (43%), Gaps = 12/253 (4%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
           +L  +  S   ++ +P         L    L  N I  +    F +L +L  L L  N +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
           + I  G F+ +  L+RL L  N++ +LP  +   L+ L    +  N ++ +R  +FN   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLN 145

Query: 214 HLTFLELSENWISS--LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
            +  +EL  N + S  +    F  +  L  + +    I TIP G   +L    +L L  N
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGN 202

Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL 331
            I ++ A +  GL NL  L L+ N +  +D  +     HL++L L++NKL  +    L+ 
Sbjct: 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLAD 261

Query: 332 LPNLITLKLAKNP 344
              +  + L  N 
Sbjct: 262 HKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  157 bits (400), Expect = 5e-45
 Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 35/231 (15%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
           L VVQ S   +E +P ++  D      LDL  N +T I+ G F  + +L  L L +N+I+
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
           ++ PG F  L  L+ L L  N+L  +   +                             +
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLKELPEKMP---------------------------KT 122

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE--LHAGTFAGLTNLTALFLNNNL 296
           L+EL + +N I  +    F  L  +  + L +N ++   +  G F G+  L+ + + +  
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
           +  +          L +L LD NK+  +   SL  L NL  L L+ N    
Sbjct: 183 ITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  239 bits (613), Expect = 5e-77
 Identities = 71/322 (22%), Positives = 132/322 (40%), Gaps = 32/322 (9%)

Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE- 130
           TE++     L+ +P  +  S   L   +L  N +++LP   F    +LT + LS N +  
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 131 -SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDL 188
               +       SL+ LDLS N + ++    F G+  L+ L  Q + + Q+    +F  L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHLGQN 247
           + L +L + +        G+FN    L  L+++ N +  +   D F++L +L  L L Q 
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307
            +E +   +F +L SL+ L +  NN   L    +  L +L  L  + N +     +  + 
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWD 367
                                     +L  L L +N + C C      +W++  R+ + +
Sbjct: 246 -----------------------FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 282

Query: 368 -SKPTCRGPGNLGGKSVEDMSF 388
             +  C  P +  G  V  ++ 
Sbjct: 283 VERMECATPSDKQGMPVLSLNI 304

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 48  RVIDLGINQ-LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
            V+ +  N        D FT L  LT L L +  L +L    F S  +L  +++S N   
Sbjct: 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI-SLEELDLSQN 151
           +L +  +K    L V+  S N I +           SL  L+L+QN
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  245 bits (627), Expect = 8e-76
 Identities = 82/363 (22%), Positives = 140/363 (38%), Gaps = 29/363 (7%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
            +++    + +  L         ++  L L    + E+    F     +  + +  N I+
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            LP   F+    LTV+ L  N + SLP  +FH+   L  L +S N L  I+  TF    S
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDF----------------LSLRNNRLSFIRPGLFN 210
           L+ L+L SNR+  +   +   L + +                 L   +N ++ +R  +  
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-- 230

Query: 211 YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS 270
               LT L+L  N ++            L E+ L  N +E I    F  +Q LE+L++ +
Sbjct: 231 -NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS 330
           N +  L+      +  L  L L++N L +++    +    L+ L LD N +  L    LS
Sbjct: 288 NRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIVTL---KLS 342

Query: 331 LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDD 390
               L  L L+ N W C+             R  V D+   C+    L        S   
Sbjct: 343 THHTLKNLTLSHNDWDCNSLRALFRNVA---RPAVDDADQHCKIDYQLEHGLCCKESDKP 399

Query: 391 LCE 393
             +
Sbjct: 400 YLD 402

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  194 bits (494), Expect = 2e-56
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 27/310 (8%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF-----ISTINLSTMDLSQNLIKTLP 109
           N      +          +      H+      ++     I+  N   +    + ++ LP
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP 67

Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
           +       ++ ++ L+   IE +    F    ++++L +  N +  +    F  +  L  
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           L L+ N ++ LP GIF +   L  LS+ NN L  I    F     L  L+LS N ++ ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187

Query: 230 GDEFSQLT----------------SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI 273
                 L                 +++EL    N I  +       L  L+   L  NN+
Sbjct: 188 LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHNNL 244

Query: 274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP 333
            +           L  + L+ N L  +    F  M  L++L + +N+L  L       +P
Sbjct: 245 TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIP 301

Query: 334 NLITLKLAKN 343
            L  L L+ N
Sbjct: 302 TLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  166 bits (421), Expect = 4e-46
 Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 26/265 (9%)

Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH-----DLISLEELDLSQNVLT 154
              N+    P      +            I+    +V+       L + + +    + + 
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
            +          ++ L L   +I ++    F     +  L +  N + ++ P +F     
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
           LT L L  N +SSL    F     L  L +  N +E I   +F    SL+ L L SN + 
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 275 ELHAGTFAGLT----------------NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
            +       L                  +  L  ++N +  +        + L  L+L  
Sbjct: 185 HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN---VELTILKLQH 241

Query: 319 NKLQYLATDSLSLLPNLITLKLAKN 343
           N L       L   P L+ + L+ N
Sbjct: 242 NNLTDT--AWLLNYPGLVEVDLSYN 264

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  233 bits (597), Expect = 3e-74
 Identities = 77/314 (24%), Positives = 138/314 (43%), Gaps = 20/314 (6%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           P  C   +  + C    ++ +P +  I  D  ++DL  N +S L KD F GL  L  L L
Sbjct: 28  PFGCHCHLRVVQCSDLGLKAVPKE--ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
             N +S++  K F     L  + +S+N +  +P         L  +++  N I  +P  V
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGV 142

Query: 137 FHDLISLEELDLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194
           F  L ++  +++  N L +   + G F G+  L  L++   ++  +P  + + L  L   
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELH-- 199

Query: 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
            L +N++  I       +  L  L L  N I  +     S L +L+ELHL  N +  +PA
Sbjct: 200 -LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258

Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGL------TNLTALFLNNNLLRY--LDTKAFE 306
           G   +L+ L+ ++L++NNI ++    F  +           + L NN + Y  +    F 
Sbjct: 259 G-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317

Query: 307 PMLHLKKLQLDSNK 320
            +     +Q  + K
Sbjct: 318 CVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  195 bits (497), Expect = 2e-59
 Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 13/253 (5%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
           +L  +  S   +K +P         L    L  N I  L  + F  L  L  L L  N +
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLL---DLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
           + I    FS +  L++L +  N + ++PP +   L  L    + +NR+  +  G+F+  +
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLR 147

Query: 214 HLTFLELSENWI--SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           ++  +E+  N +  S      F  L  L  L + +  +  IP      L    +L L  N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLN---ELHLDHN 203

Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL 331
            IQ +        + L  L L +N +R ++  +   +  L++L LD+NKL  +    L  
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPD 262

Query: 332 LPNLITLKLAKNP 344
           L  L  + L  N 
Sbjct: 263 LKLLQVVYLHTNN 275

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  113 bits (284), Expect = 2e-28
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 14/187 (7%)

Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
            T SG+  L  L    +     P G    L+ +      +  L  +   +       T L
Sbjct: 8   ETTSGIPDLDSLPPTYS--AMCPFGCHCHLRVVQ---CSDLGLKAVPKEIS---PDTTLL 59

Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA 278
           +L  N IS L  D+F  L  L  L L  N I  I   +F+ L+ L+KL++  N++ E+  
Sbjct: 60  DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119

Query: 279 GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ--YLATDSLSLLPNLI 336
                 ++L  L +++N +R +    F  + ++  +++  N L+       +   L  L 
Sbjct: 120 NLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN 175

Query: 337 TLKLAKN 343
            L++++ 
Sbjct: 176 YLRISEA 182

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  230 bits (589), Expect = 7e-73
 Identities = 77/310 (24%), Positives = 122/310 (39%), Gaps = 16/310 (5%)

Query: 79  NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
             L+ +P  L  +  +L   DLS N I  + ++  +  + L  + L+ N I ++  + F 
Sbjct: 41  GSLNSIPSGLTEAVKSL---DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97

Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLR 197
            L SLE LDLS N L+++    F  + SL  L L  N    L    +F  L  L  L + 
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157

Query: 198 NN-RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256
           N    + I+   F     L  LE+  + + S        + ++  L L       +    
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 257 FANLQSLEKLFLYSN-----NIQELHAGTFAGLTNLTAL---FLNNNLLRYLDTKAFEPM 308
                S+E L L        +  EL  G    L          + +  L  +  K    +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQI 276

Query: 309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKVWD 367
             L +L+   N+L+ +       L +L  + L  NPW C C  I Y++RWL  N +K   
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 336

Query: 368 SKPTCRGPGN 377
           S   C G G 
Sbjct: 337 S-AKCSGSGK 345

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  118 bits (297), Expect = 4e-30
 Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 29/178 (16%)

Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
                +  L+ I  GL    + +  L+LS N I+ ++  +  +  +L+ L L  N I TI
Sbjct: 35  ICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91

Query: 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN----------------- 295
              SF++L SLE L L  N +  L +  F  L++LT L L  N                 
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 296 ---------LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
                        +  K F  +  L++L++D++ LQ     SL  + N+  L L    
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  221 bits (565), Expect = 4e-70
 Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 11/263 (4%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
              Q        +P N+     S + LDLS N L  +   +F     L+ L L    I  
Sbjct: 10  ITYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
           +  G +  L +L  L L  N +  +  G F+    L  L   E  ++SL       L +L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 240 KELHLGQNYIETIP-AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA----LFLNN 294
           KEL++  N I++      F+NL +LE L L SN IQ ++      L  +      L L+ 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILY 353
           N + ++   AF+  + LK+L LD+N+L+ +       L +L  + L  NPW C C  I Y
Sbjct: 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245

Query: 354 MARWLRANRRKVWDSKPTCRGPG 376
           ++RWL  N +K   S   C G G
Sbjct: 246 LSRWLNKNSQKEQGS-AKCSGSG 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  230 bits (588), Expect = 6e-70
 Identities = 77/351 (21%), Positives = 130/351 (37%), Gaps = 34/351 (9%)

Query: 46  DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
            ++ +DL    LS L      GL  L +L L  N    L      +  +L+ + +  N  
Sbjct: 279 GLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 106 KT-LPSTFFKGAIRLTVVQLSYNAIESLPAN--VFHDLISLEELDLSQNVLTSIQYGTFS 162
           +  L +   +    L  + LS++ IE+         +L  L+ L+LS N   S++   F 
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 163 GMYSLKRLKLQSNRINQL-PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS 221
               L+ L L   R+        F +L  L  L+L ++ L      LF+    L  L L 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 222 ENWISSLNGDE---FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA 278
            N     N  +      L  L+ L L    + +I   +F +L+ +  + L  N +     
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 279 GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL 338
              + L  +                          L L SN +  +    L +L    T+
Sbjct: 518 EALSHLKGIY-------------------------LNLASNHISIILPSLLPILSQQRTI 552

Query: 339 KLAKNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSF 388
            L +NP  C C+ +Y   W + N +K+ D     C  P  L G  + D++ 
Sbjct: 553 NLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  224 bits (572), Expect = 1e-67
 Identities = 83/336 (24%), Positives = 126/336 (37%), Gaps = 10/336 (2%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
            +  C  +    T +C    + E+P    +P     ++   N L T+    F+ L  LT 
Sbjct: 4   SDQKCIEKEVNKTYNCENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTF 61

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
           L L +  +  +    F S   L T+ L+ N +  +  T   G   L  +      I S+ 
Sbjct: 62  LDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121

Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
               H+  +LE L L  N ++SI+         LK L  Q+N I+ L       L+    
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181

Query: 194 LSLR--NNRLSFIRPGLFNYFKHLTFLELSENWIS--SLNGDEFSQLTSLKELHLGQNYI 249
           LSL    N ++ I PG F+       L             G + S + SL          
Sbjct: 182 LSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 250 ETIPAGSFANLQ--SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307
           E I    F  L   S+E + L  +    + + TF   + L  L L    L  L       
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVG 299

Query: 308 MLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           +  LKKL L +NK + L   S S  P+L  L +  N
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 3/84 (3%)

Query: 261 QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK 320
           +  +     +  + E+         +   L  + N+L  +    F  +++L  L L   +
Sbjct: 12  EVNKTYNCENLGLNEIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ 68

Query: 321 LQYLATDSLSLLPNLITLKLAKNP 344
           + ++  D+      L TL L  NP
Sbjct: 69  IYWIHEDTFQSQHRLDTLVLTANP 92

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  227 bits (581), Expect = 6e-69
 Identities = 74/360 (20%), Positives = 135/360 (37%), Gaps = 14/360 (3%)

Query: 39  FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM 98
            + +  V I    L      +     F  L  ++ + L    +  L            ++
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSL 312

Query: 99  DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
            + +  +K  P+        L  + L+ N            L SL  LDLS+N L+    
Sbjct: 313 SIIRCQLKQFPTLDLP---FLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGC 367

Query: 159 GTFS--GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHL 215
            ++S  G  SL+ L L  N    +    F  L+ L  L  +++ L  +     F   + L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQN-YIETIPAGSFANLQSLEKLFLYSNNIQ 274
            +L++S           F  LTSL  L +  N + +   +  FAN  +L  L L    ++
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
           ++  G F  L  L  L +++N L +LD+  +  +  L  L    N+++           +
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 335 LITLKLAKNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
           L    L  N   C C      +W++  ++ + +  + TC  P  +    V D + +  C 
Sbjct: 547 LAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFN-NSTCY 605

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  197 bits (503), Expect = 1e-57
 Identities = 76/341 (22%), Positives = 127/341 (37%), Gaps = 22/341 (6%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           PC       T  C  Q + ++P D  IP   + IDL  N L  L   +F+   +L  L L
Sbjct: 6   PCIEVVPNITYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL 63

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
            +  +  +  K +    +LS + L+ N I++     F G   L  +      + SL +  
Sbjct: 64  SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

Query: 137 FHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF-- 193
              LI+L++L+++ N + S +    FS + +L  + L  N I  +       L+      
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183

Query: 194 --LSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHL------ 244
             L +  N + FI+   F   K L  L L  N   S++       L  L    L      
Sbjct: 184 LSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 245 GQNYIETIPAGSFANLQSLEKLFLY--SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT 302
            +  +E         L  +          N        F  L N++A+ L    ++YL+ 
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302

Query: 303 KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
                    + L +   +L+   T     LP L +L L  N
Sbjct: 303 VPK--HFKWQSLSIIRCQLKQFPTLD---LPFLKSLTLTMN 338

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  163 bits (415), Expect = 3e-45
 Identities = 60/332 (18%), Positives = 104/332 (31%), Gaps = 40/332 (12%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLSQNLIK 106
             +     +L++L       L  L +L +  N +        F +  NL  +DLS N I+
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 107 TLPSTFFKGAIRLTVVQ----LSYNAIESLPANVFHDLISLEELDLSQNVL-TSIQYGTF 161
           T+     +       V     +S N I+ +    F  +  L EL L  N   ++I     
Sbjct: 167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCL 225

Query: 162 SGMYSLKRLKLQSNRINQ------LPPGIFDDLKYLDF--LSLRNNRLSFIRPGLFNYFK 213
             +  L   +L               P I + L  +      L            F+   
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 214 HLTFLELSENWIS-------------------SLNGDEFSQLTSLKELHLGQNYIETIPA 254
           +++ + L+   I                     L       L  LK L L  N       
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISF- 344

Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFA--GLTNLTALFLNNNLLRYLDTKAFEPMLHLK 312
                L SL  L L  N +      +++  G  +L  L L+ N    +    F  +  L+
Sbjct: 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQ 402

Query: 313 KLQLDSNKLQYL-ATDSLSLLPNLITLKLAKN 343
            L    + L+ +    +   L  L+ L ++  
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  140 bits (356), Expect = 5e-37
 Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 9/205 (4%)

Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR 205
                  L+ +     S   S K + L  N +  L    F +   L +L L    +  I 
Sbjct: 16  YQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK 265
              ++   HL+ L L+ N I S +   FS LTSL+ L   +  + ++ +     L +L+K
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 266 LFLYSNNIQELH-AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK----KLQLDSNK 320
           L +  N I        F+ LTNL  + L+ N ++ +     + +         L +  N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 321 LQYLATDSLSLLPNLITLKLAKNPW 345
           + ++   +   +  L  L L  N  
Sbjct: 193 IDFIQDQAFQGI-KLHELTLRGNFN 216

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (561), Expect = 2e-65
 Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 18/341 (5%)

Query: 19  RCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRK 78
           +C        C    + ++P D  +P +I V++L  NQL  L    FT   +LT L +  
Sbjct: 1   KCTVSHEVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 79  NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
           N +S+L  +L      L  ++L  N +  L    F     LT + L  N+I+ +  N F 
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK--YLDFLSL 196
              +L  LDLS N L+S + GT   + +L+ L L +N+I  L     D      L  L L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 197 RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS---QLTSLKELHLGQNYIETIP 253
            +N++    PG F+    L  L L+   +     ++       TS++ L L  + + T  
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 254 AGSFANLQ--SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHL 311
             +F  L+  +L  L L  NN+  +   +FA L  L   FL  N +++L + +   + ++
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 312 KKLQLDSN---------KLQYLATDSLSLLPNLITLKLAKN 343
           + L L  +          L  +   S   L  L  L +  N
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (546), Expect = 3e-63
 Identities = 87/359 (24%), Positives = 143/359 (39%), Gaps = 41/359 (11%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--ELPGKLFISTIN--LSTMDLSQ 102
           +  +++  N +  +  + FTGL  L  L L  +  S   L  + F+S  +  L  ++L++
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQNVLTSIQYGTF 161
           N I  + S  F     L V+ L  N I   L    +  L ++ E+ LS N    +   +F
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 162 SGMYSLKRLKLQSNRINQLP--PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
           + + SL+RL L+   +  +   P  F  L+ L  L L NN ++ I   +    + L  L+
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILD 510

Query: 220 LSENWISSLNGD--------EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           L  N ++ L               L+ L  L+L  N  + IP   F +L  L+ + L  N
Sbjct: 511 LQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL 331
           N+  L A  F    +L +L L  NL+  ++ K F P                        
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP-----------------------A 607

Query: 332 LPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV--WDSKPTCRGPGNLGGKSVEDMS 387
             NL  L +  NP+ C C +I +   W+      +    S   C  P +  G  V    
Sbjct: 608 FRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFD 666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  199 bits (508), Expect = 8e-58
 Identities = 81/318 (25%), Positives = 129/318 (40%), Gaps = 20/318 (6%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  + L  N +  +  + F     L  L L  N LS       +   NL  + LS N I+
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 107 TLPSTFFK--GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI---QYGTF 161
            L S          L  ++LS N I+      FH +  L  L L+   L      +    
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 162 SGMYSLKRLKLQSNRINQLPPGIFDDLKY--LDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
               S++ L L +++++      F  LK+  L  L L  N L+ +    F +   L +  
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNY---------IETIPAGSFANLQSLEKLFLYS 270
           L  N I  L       L +++ L+L +++         +  I   SF  L+ LE L +  
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338

Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLL--RYLDTKAFEPMLH--LKKLQLDSNKLQYLAT 326
           N+I  + +  F GL NL  L L+N+    R L  + F  + H  L  L L  NK+  + +
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 327 DSLSLLPNLITLKLAKNP 344
           D+ S L +L  L L  N 
Sbjct: 399 DAFSWLGHLEVLDLGLNE 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
           S E        + ++        TN+T L L +N LR L    F     L  L +  N +
Sbjct: 5   SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 322 QYLATDSLSLLPNLITLKLAKNP 344
             L  +    LP L  L L  N 
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNE 84

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  218 bits (558), Expect = 5e-64
 Identities = 97/386 (25%), Positives = 164/386 (42%), Gaps = 26/386 (6%)

Query: 22  PEIHTLSCWKQDMEELP---FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRK 78
             I        ++++     F  +    +R +DL    + +L+   F  L  L  L L  
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 79  NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH 138
           N ++++  + F    NL  ++LS NL+  L S+ F G  ++  + L  N I  +    F 
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
            L  L+ LDL  N LT+I       + S+  + L  N++  LP          + + L  
Sbjct: 360 FLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSE 410

Query: 199 NRLSFIRPGLF-NYFKHLTFLELSENWISSLNGDE-FSQLTSLKELHLGQNYIE-----T 251
           NRL  +    F     HL  L L++N  SS +GD+  S+  SL++L LG+N ++      
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470

Query: 252 IPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHL 311
           +    F  L  L+ L+L  N +  L  G F+ LT L  L LN+N L  L         +L
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NL 528

Query: 312 KKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKV--WDSK 369
           + L +  N+L      +  +  +L  L +  N + C+C +     WL      +    + 
Sbjct: 529 EILDISRNQLLAP---NPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPAD 585

Query: 370 PTCRGPGNLGGKSVEDMSFDDLCEGQ 395
             C  P +  G S+  +S +   E +
Sbjct: 586 IYCVYPDSFSGVSLFSLSTEGCDEEE 611

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  194 bits (495), Expect = 3e-55
 Identities = 80/324 (24%), Positives = 134/324 (41%), Gaps = 26/324 (8%)

Query: 46  DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQNL 104
               + L  N + T++  +F  L +L  L+L   +    +  + F +  NL  +DL  + 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIES--LPANVFHDLISLEELDLSQNVLTSIQ-YGTF 161
           I  L    F+G   L  ++L +  +    L    F +L +L  LDLS+N + S+  + +F
Sbjct: 85  IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144

Query: 162 SGMYSLKRLKLQSNRINQLPPGIFDDL--KYLDFLSLRNNRLSFIRPGLF----NYFK-- 213
             + SLK +   SN+I  +     + L  K L F SL  N L       +    N F+  
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 214 HLTFLELSENWISSLNGDEFSQ------------LTSLKELHLGQNYIETIPAGSFANLQ 261
            L  L++S N  +      FS                +     G + I+     +FA L 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 262 --SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSN 319
             S+  L L    +  L++  F  L +L  L L  N +  +  +AF  + +L+ L L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 320 KLQYLATDSLSLLPNLITLKLAKN 343
            L  L + +   LP +  + L KN
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  173 bits (441), Expect = 6e-48
 Identities = 75/345 (21%), Positives = 124/345 (35%), Gaps = 51/345 (14%)

Query: 48  RVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLSQNL 104
             + L    LS   L    F  L  LT L L KN +  L     F    +L ++D S N 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 105 IKTLPSTFFKG--AIRLTVVQLSYNAIESLPANVFHDL------ISLEELDLSQNVLTSI 156
           I  +     +      L+   L+ N++ S  +  +         + LE LD+S N  T  
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 157 QYGTFS------------GMYSLKRLKLQSNRINQLPPGIFDDLK--YLDFLSLRNNRLS 202
             G FS              + +       + I       F  L    +  L L +  + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
            +   +F   K L  L L+ N I+ +  + F  L +L+ L+L  N +  + + +F  L  
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339

Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
           +  + L  N+I  +   TF  L  L  L L +N L  +       +  +  + L  NKL 
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLV 394

Query: 323 YLATDSLSL---------------------LPNLITLKLAKNPWH 346
            L   +L+                      +P+L  L L +N + 
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  155 bits (394), Expect = 1e-41
 Identities = 58/291 (19%), Positives = 108/291 (37%), Gaps = 30/291 (10%)

Query: 79  NHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVF 137
            +L+++P  L         + LS N I+T+ ++ F    +L +++L       ++    F
Sbjct: 14  CNLTQVPQVLN----TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 138 HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ--LPPGIFDDLKYLDFLS 195
            +L +L  LDL  + +  +    F G++ L  L+L    ++   L  G F +LK L  L 
Sbjct: 70  RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129

Query: 196 LRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLT--SLKELHLGQNYIETI 252
           L  N++  +     F     L  ++ S N I  +   E   L   +L    L  N + + 
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 253 PAGSFANLQ------SLEKLFLYSNNIQELHAGTFA------------GLTNLTALFLNN 294
            +  +           LE L +  N       G F+               ++       
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 295 NLLRYLDTKAFEPM--LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           + ++  D   F  +    ++ L L    +  L +     L +L  L LA N
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (265), Expect = 8e-25
 Identities = 44/152 (28%), Positives = 63/152 (41%), Gaps = 8/152 (5%)

Query: 196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPA 254
            R   L+ +             L LS N+I ++    F  L  L+ L LG  Y   TI  
Sbjct: 11  YRFCNLTQV----PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR--YLDTKAFEPMLHLK 312
            +F NL +L  L L S+ I  LH   F GL +L  L L    L    L    F  +  L 
Sbjct: 67  EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 313 KLQLDSNKLQYL-ATDSLSLLPNLITLKLAKN 343
           +L L  N+++ L    S   L +L ++  + N
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  211 bits (540), Expect = 3e-63
 Identities = 83/333 (24%), Positives = 125/333 (37%), Gaps = 17/333 (5%)

Query: 52  LGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGK---LFISTINLSTMDLSQNLIKTL 108
                L    K A  GL  LT  + R  +L         LF    N+S+  L    I+ +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297

Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK 168
               +        ++L        P      L SL+ L  + N   +    +   + SL+
Sbjct: 298 KDFSYNF--GWQHLELVNCKFGQFP---TLKLKSLKRLTFTSNKGGNA--FSEVDLPSLE 350

Query: 169 RLKLQSNRINQ--LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
            L L  N ++              L +L L  N +  +    F   + L  L+   + + 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLK 409

Query: 227 SL-NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE-LHAGTFAGL 284
            +     F  L +L  L +   +      G F  L SLE L +  N+ QE      F  L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
            NLT L L+   L  L   AF  +  L+ L + SN+L+ +       L +L  + L  NP
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 345 WHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
           W C C  I Y++RWL  N +K   S   C G G
Sbjct: 530 WDCSCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 561

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  184 bits (470), Expect = 3e-53
 Identities = 74/334 (22%), Positives = 133/334 (39%), Gaps = 20/334 (5%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           PC       T  C + +  ++P +  +P   + +DL  N L  L   +F    +L  L L
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
            +  +  +    + S  +LST+ L+ N I++L    F G   L  +      + SL    
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 137 FHDLISLEELDLSQNVLTSIQYG-TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF-- 193
              L +L+EL+++ N++ S +    FS + +L+ L L SN+I  +       L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 194 --LSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHL------ 244
             L L  N ++FI+PG F   + L  L L  N+ S ++       L  L+   L      
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELH---AGTFAGLTNLTALFLNNNLLRYLD 301
            +  +E     +   L +L         +          F  LTN+++  L +  +  + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
             ++      + L+L + K     T  L  L  L
Sbjct: 299 DFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRL 330

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  168 bits (428), Expect = 3e-47
 Identities = 72/276 (26%), Positives = 111/276 (40%), Gaps = 16/276 (5%)

Query: 76  LRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN 135
             + +  ++P  L  ST NL   DLS N ++ L S  F     L V+ LS   I+++   
Sbjct: 14  CMELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
            +  L  L  L L+ N + S+  G FSG+ SL++L      +  L       LK L  L+
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 196 LRNNRLSFIRPG-LFNYFKHLTFLELSENWISSLNGDEFSQLTSLK----ELHLGQNYIE 250
           + +N +   +    F+   +L  L+LS N I S+   +   L  +      L L  N + 
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 251 TIPAGSFANLQSLEKLFLYSNNIQ-ELHAGTFAGLTNLTAL------FLNNNLLRYLDTK 303
            I  G+F  +  L KL L +N     +      GL  L         F N   L   D  
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 304 AFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLK 339
           A E + +L   +     L Y   D + L   L  + 
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (413), Expect = 5e-45
 Identities = 60/263 (22%), Positives = 96/263 (36%), Gaps = 16/263 (6%)

Query: 97  TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
           T    +     +P            + LS+N +  L +  F     L+ LDLS+  + +I
Sbjct: 11  TYQCMELNFYKIPDNLPFS---TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
           + G +  +  L  L L  N I  L  G F  L  L  L      L+ +      + K L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 217 FLELSENWISSLN-GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE----KLFLYSN 271
            L ++ N I S    + FS LT+L+ L L  N I++I       L  +      L L  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRY-LDTKAFEPMLHLKKLQL------DSNKLQYL 324
            +  +  G F  +  L  L L NN     +     + +  L+  +L      +   L+  
Sbjct: 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 325 ATDSLSLLPNLITLKLAKNPWHC 347
              +L  L NL   +        
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDY 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  123 bits (310), Expect = 7e-31
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLSQNLI 105
           ++ +DL  N + T+S + F GL +L  L  + ++L ++    +F+S  NL  +D+S    
Sbjct: 375 LKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAI-ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
           +   +  F G   L V++++ N+  E+   ++F +L +L  LDLSQ  L  +    F+ +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
            SL+ L + SN++  +P GIFD L  L  + L  N   
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  202 bits (517), Expect = 5e-63
 Identities = 85/266 (31%), Positives = 133/266 (50%), Gaps = 6/266 (2%)

Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD 186
            A+      V     +   +D S   LT+I     +     K+L LQSN+++ LP   F 
Sbjct: 2   EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAFH 58

Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
            L  L  L L +N+L  +  G+F   K+L  L +++N + +L    F QL +L EL L +
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118

Query: 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
           N ++++P   F +L  L  L L  N +Q L  G F  LT+L  L L NN L+ +   AF+
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178

Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV 365
            +  LK L+LD+N+L+ +   +   L  L  L+L +NPW C C  I+YMA+WL+    + 
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEG 238

Query: 366 WDSKPTCRGPGNLGGKSVEDMSFDDL 391
                        GGK+V +++  D 
Sbjct: 239 LG--GVDTAGCEKGGKAVLEITEKDA 262

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  175 bits (445), Expect = 2e-52
 Identities = 74/211 (35%), Positives = 109/211 (51%), Gaps = 2/211 (0%)

Query: 13  CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
              G C C    +++ C  + +  +P +  IP D + +DL  N+LS+L   AF  L KL 
Sbjct: 7   KDGGVCSCNNNKNSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLR 64

Query: 73  ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
            L L  N L  LP  +F    NL T+ ++ N ++ LP   F   + L  ++L  N ++SL
Sbjct: 65  LLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL 124

Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
           P  VF  L  L  L L  N L S+  G F  + SLK L+L +N++ ++P G FD L  L 
Sbjct: 125 PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184

Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
            L L NN+L  +  G F+  + L  L+L EN
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  202 bits (515), Expect = 7e-60
 Identities = 71/371 (19%), Positives = 135/371 (36%), Gaps = 45/371 (12%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           I  + L +++ + L +     L  +  L+LR  +L+             S M        
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 107 TLPSTFFKGAIRLT------------------VVQLSYNAIESLPANVFHDLISLEELDL 148
            L    F   ++L                   +   + +  + +      + +++  L +
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293

Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
            Q  L       +S +  +KR+ ++++++  +P      LK L+FL L  N +       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 209 FNYFKHLTFLE---LSENWISSL--NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
                    L+   LS+N + S+   G+    L +L  L + +N    +P       + +
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKM 412

Query: 264 EKLFLYSNNIQELHAGTF-----------------AGLTNLTALFLNNNLLRYLDTKAFE 306
             L L S  I+ +                        L  L  L+++ N L+ L   +  
Sbjct: 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLF 472

Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV 365
           P   L  +++  N+L+ +       L +L  + L  NPW C C  I Y++RWL  N +K 
Sbjct: 473 P--VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 530

Query: 366 WDSKPTCRGPG 376
             S   C G G
Sbjct: 531 QGS-AKCSGSG 540

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  197 bits (503), Expect = 5e-58
 Identities = 52/342 (15%), Positives = 125/342 (36%), Gaps = 22/342 (6%)

Query: 22  PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL 81
                     +    +P    +   ++ +DL  N+++ +          L  L L+ + +
Sbjct: 5   DASGVCDGRSRSFTSIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 82  SELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN-VFHDL 140
           + + G  F S  +L  +DLS N + +L S++F     L  + L  N  ++L    +F +L
Sbjct: 63  NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 141 ISLEELDLS-QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
            +L+ L +      + I+   F+G+ SL  L++++  +          ++ +  L+L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
             +F+     +    + +LEL +  ++               +         +   SF  
Sbjct: 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 260 LQSLEKL------------------FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD 301
           L  L +                       +    +          +  L +    L Y  
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           +  +  +  +K++ ++++K+  +       L +L  L L++N
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  180 bits (459), Expect = 1e-51
 Identities = 57/321 (17%), Positives = 119/321 (37%), Gaps = 25/321 (7%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-GKLFISTINLSTMDLS-QNLI 105
             +DL  N LS+LS   F  L  L  L L  N    L    LF +  NL T+ +      
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
             +    F G   L  +++   ++ +  +     +  +  L L  +    +       + 
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF----------KHL 215
           S++ L+L+   + +         +    +     R S +    FN              +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 216 TFLELSENWISSLNGDEFS--------QLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
            F + + N +   N  E          +  +++ LH+ Q Y+    +  ++ L+ ++++ 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 268 LYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL---DTKAFEPMLHLKKLQLDSNKLQYL 324
           + ++ +  +       L +L  L L+ NL+      ++        L+ L L  N L+ +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 325 ATDSLSL--LPNLITLKLAKN 343
                 L  L NL +L +++N
Sbjct: 377 QKTGEILLTLKNLTSLDISRN 397

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (409), Expect = 1e-44
 Identities = 50/252 (19%), Positives = 95/252 (37%), Gaps = 5/252 (1%)

Query: 99  DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
           D       ++PS        +  + LS+N I  +         +L+ L L  + + +I+ 
Sbjct: 11  DGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL-SFIRPGLFNYFKHLTF 217
             F  + SL+ L L  N ++ L    F  L  L +L+L  N   +     LF    +L  
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 218 LELS-ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
           L +      S +   +F+ LTSL EL +    +    + S  +++ +  L L+ +    L
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLI 336
                  L+++  L L +  L                ++  + +   L  +S + L  L+
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 337 TLKLAKNPWHCD 348
              L  +    D
Sbjct: 248 RYILELSEVEFD 259

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  158 bits (402), Expect = 1e-43
 Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 15/235 (6%)

Query: 45  VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
           V IR + +    L       ++ L K+  + +  + +  +P        +L  +DLS+NL
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345

Query: 105 IKTLP---STFFKGAIRLTVVQLSYNAIESLP--ANVFHDLISLEELDLSQNVLTSIQYG 159
           +       S        L  + LS N + S+     +   L +L  LD+S+N    +   
Sbjct: 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405

Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
                  ++ L L S  I  +   I   L+ LD   + NN L      L      L  L 
Sbjct: 406 -CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSNNNLDSFSLFLPR----LQELY 457

Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
           +S N + +L          L  + + +N ++++P G F  L SL+K++L++N   
Sbjct: 458 ISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 34  MEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI 93
              +P     P  +R ++L    +  +          L  L +  N+L      L     
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ---TLEVLDVSNNNLDSFSLFLP---- 451

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
            L  + +S+N +KTLP         L V+++S N ++S+P  +F  L SL+++ L  N
Sbjct: 452 RLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  195 bits (498), Expect = 3e-59
 Identities = 60/289 (20%), Positives = 113/289 (39%), Gaps = 17/289 (5%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN-V 152
           +       ++ +  +PS   + AI L   +     +  +    F     LE++++SQN V
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 153 LTSIQYGTFSGMYSLKRLKLQ-SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNY 211
           L  I+   FS +  L  ++++ +N +  + P  F +L  L +L + N  +  +      +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126

Query: 212 FKHLTFLELSENW-ISSLNGDEFSQLTS-LKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
                 L++ +N  I ++  + F  L+     L L +N I+ I   +F   Q  E     
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 270 SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
           +NN++EL    F G +    L ++   +  L +   E +  L+     + K       +L
Sbjct: 187 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTL 242

Query: 330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRR-KVWDSKPTCRGPGN 377
             L  L+   L   P HC       A W R         +K   R   +
Sbjct: 243 EKLVALMEASLT-YPSHCCA----FANWRRQISELHPICNKSILRQEVD 286

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 44  PVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN 103
             +  ++ L  N +  +   AF G           N+L ELP  +F        +D+S+ 
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212

Query: 104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN 151
            I +LPS   +   +L     S   ++ LP      L++L E  L+  
Sbjct: 213 RIHSLPSYGLENLKKLRA--RSTYNLKKLPT--LEKLVALMEASLTYP 256

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  193 bits (492), Expect = 4e-59
 Identities = 59/233 (25%), Positives = 88/233 (37%), Gaps = 7/233 (3%)

Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
           P      + S  E++  +  LT++             L L  N +             L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
            L+L    L+ ++         L  L+LS N + SL       L +L  L +  N + ++
Sbjct: 59  QLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSL 115

Query: 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK 312
           P G+   L  L++L+L  N ++ L  G       L  L L NN L  L       + +L 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKV 365
            L L  N L  +          L    L  NPW C+C ILY  RWL+ N   V
Sbjct: 176 TLLLQENSLYTIPKGFFGSH-LLPFAFLHGNPWLCNCEILYFRRWLQDNAENV 227

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  165 bits (419), Expect = 2e-48
 Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 6/208 (2%)

Query: 16  GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELK 75
                      ++C K+++  LP D  +P D  ++ L  N L T S        +LT+L 
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 76  LRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN 135
           L +  L++L   +  +   L T+DLS N +++LP    +    LTV+ +S+N + SLP  
Sbjct: 62  LDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLG 118

Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS 195
               L  L+EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 196 LRNNRLSFIRPGLFNYFKHLTFLELSEN 223
           L+ N L  I  G F     L F  L  N
Sbjct: 179 LQENSLYTIPKGFFG-SHLLPFAFLHGN 205

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  188 bits (479), Expect = 6e-57
 Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 39/299 (13%)

Query: 62  KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTV 121
            +      +    K+  + L +    L  S  N+  +DLS N +  + +       +L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           + LS N +          L +L  LDL+ N +  +  G      S++ L   +N I+++ 
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115

Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSLK 240
                  K +    L NN+++ +R         + +L+L  N I ++N  +  +   +L+
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
            L+L  N+I  +          L+ L L SN +  +    F     +T + L NN L  +
Sbjct: 173 HLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229

Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLR 359
           +                          +L    NL    L  N +HC     + ++  R
Sbjct: 230 E-------------------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  179 bits (456), Expect = 2e-53
 Identities = 50/295 (16%), Positives = 98/295 (33%), Gaps = 24/295 (8%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
            ++  +  + L           + + EL L  N LS++          L  ++LS N++ 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
                  +    L  + L+ N ++ L         S+E L  + N ++ +          
Sbjct: 72  ETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQ---G 121

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI-RPGLFNYFKHLTFLELSENWI 225
            K + L +N+I  L          + +L L+ N +  +    L      L  L L  N+I
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
             + G        LK L L  N +  +    F +   +  + L +N +  +         
Sbjct: 182 YDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK-ALRFSQ 237

Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340
           NL    L  N               L+     + ++Q +A  ++  L      + 
Sbjct: 238 NLEHFDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (260), Expect = 3e-25
 Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 33/224 (14%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
             +    N +S +S     G      + L  N ++ L          +  +DL  N I T
Sbjct: 102 ETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 108 LP-STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
           +  +     +  L  + L YN I  +   V      L+ LDLS N L  +    F     
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAG 215

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           +  + L++N++  +        + L+   LR N         F + K+     +++  + 
Sbjct: 216 VTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273

Query: 227 SLNGDE------------------------FSQLTSLKELHLGQ 246
            L G                            +L +L   H   
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  194 bits (494), Expect = 3e-56
 Identities = 70/353 (19%), Positives = 132/353 (37%), Gaps = 38/353 (10%)

Query: 46  DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
           ++    L    +  +    F+  +    L+L      + P     S   L     + N  
Sbjct: 283 NVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKG 337

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAI--ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG 163
               S        L  + LS N +  +   +       SL+ LDLS N + ++    F G
Sbjct: 338 GNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394

Query: 164 MYSLKRLKLQSNRINQL-PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
           +  L+ L  Q + + Q+    +F  L+ L +L + +        G+FN    L  L+++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 223 N-WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF 281
           N +  +   D F++L +L  L L Q  +E +   +F +L SL+ L +  NN   L    +
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 282 AGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLA 341
             L +L  L  + N +     +  +                           +L  L L 
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQH-----------------------FPSSLAFLNLT 551

Query: 342 KNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMSFDDLCE 393
           +N + C C      +W++  R+ + +  +  C  P +  G  V  +S +  C+
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPV--LSLNITCQ 602

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  171 bits (436), Expect = 4e-48
 Identities = 74/342 (21%), Positives = 133/342 (38%), Gaps = 20/342 (5%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           PC       T  C + +  ++P +  +P   + +DL  N L  L   +F    +L  L L
Sbjct: 2   PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 59

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
            +  +  +    + S  +LST+ L+ N I++L    F G   L  +      + SL    
Sbjct: 60  SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 137 FHDLISLEELDLSQNVLTSIQYG-TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF-- 193
              L +L+EL+++ N++ S +    FS + +L+ L L SN+I  +       L  +    
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179

Query: 194 --LSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHL------ 244
             L L  N ++FI+PG F   + L  L L  N+ S ++       L  L+   L      
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELH---AGTFAGLTNLTALFLNNNLLRYLD 301
            +  +E     +   L +L         +          F  LTN+++  L +  +  + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
             ++      + L+L + K     T  L  L  L        
Sbjct: 299 DFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 29/60 (48%)

Query: 285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
            +   L L+ N LR+L + +F     L+ L L   ++Q +   +   L +L TL L  NP
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  188 bits (480), Expect = 4e-53
 Identities = 63/333 (18%), Positives = 118/333 (35%), Gaps = 29/333 (8%)

Query: 47  IRVIDLGINQLSTL-SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
           I++  +G N L    +  +   + KL  L    N +  L    F + + L+ + L  N I
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQI 607

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANV-FHDLISLEELDLSQNVLTSIQYGTFSGM 164
           + +P  F     ++  +  S+N ++ +P       +  +  +D S N + S        M
Sbjct: 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667

Query: 165 -----YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI-------RPGLFNYF 212
                 +   + L  N I + P  +F     +  + L NN ++ I       + G +   
Sbjct: 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727

Query: 213 KHLTFLELSENWISSL-NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKL----- 266
             LT ++L  N ++SL +    + L  L  + +  N   + P     N   L+       
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT-QPLNSSQLKAFGIRHQ 786

Query: 267 -FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA 325
                N I            +L  L + +N +R +D K       L  L +  N    + 
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISID 843

Query: 326 TDSL--SLLPNLITLKLAKNPWHCDCAILYMAR 356
             S+   +   +  L   K      C  L + R
Sbjct: 844 VTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  174 bits (442), Expect = 4e-48
 Identities = 56/327 (17%), Positives = 115/327 (35%), Gaps = 29/327 (8%)

Query: 42  IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLR-KNHLSELPGKLFISTINLSTMDL 100
            I VD    +    +     + +++ L  LT+++L    ++++LP  L+     L ++++
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNI 522

Query: 101 SQNLIKTLPSTF---------FKGAIRLTVVQLSYNAIESLPANV-FHDLISLEELDLSQ 150
           + N   +                   ++ +  + YN +E  PA+     ++ L  LD   
Sbjct: 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582

Query: 151 NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL-F 209
           N +  ++   F     L  LKL  N+I ++P         ++ L   +N+L +I      
Sbjct: 583 NKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA 640

Query: 210 NYFKHLTFLELSENWISSLNGDEFS-----QLTSLKELHLGQNYIETIPAGSFANLQSLE 264
                +  ++ S N I S   +        +  +   + L  N I+  P   FA    + 
Sbjct: 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700

Query: 265 KLFLYSNNIQELHA-------GTFAGLTNLTALFLNNNLLRYL-DTKAFEPMLHLKKLQL 316
            + L +N +  +         G +     LT + L  N L  L D      + +L  + +
Sbjct: 701 TIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDV 760

Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKN 343
             N               L    +   
Sbjct: 761 SYNCFSSF-PTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  154 bits (391), Expect = 3e-41
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 25/308 (8%)

Query: 52  LGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPST 111
               ++  + KD+   L K T++    N ++ +   +      L  +  + +        
Sbjct: 409 NRNPEMKPIKKDSRISL-KDTQIGNLTNRITFISKAIQ-RLTKLQIIYFANSPFTYDNIA 466

Query: 112 FFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
                +        Y          + +L  L +++L      +        +  L+ L 
Sbjct: 467 -----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521

Query: 172 LQSNRINQLP---------PGIFDDLKYLDFLSLRNNRLSFI-RPGLFNYFKHLTFLELS 221
           +  NR                  D    +    +  N L              L  L+  
Sbjct: 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL-HAGT 280
            N +  L  + F     L +L L  N IE IP    A    +E L    N ++ + +   
Sbjct: 582 HNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 281 FAGLTNLTALFLNNNLLRYLDTKAFEPM-----LHLKKLQLDSNKLQYLATDSLSLLPNL 335
              +  + ++  + N +          M     ++   + L  N++Q   T+  +    +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 336 ITLKLAKN 343
            T+ L+ N
Sbjct: 700 STIILSNN 707

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  146 bits (369), Expect = 3e-38
 Identities = 42/310 (13%), Positives = 96/310 (30%), Gaps = 29/310 (9%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ-----NLIKTLP 109
                  K       +L    L ++ ++  P    I   +  ++  +Q     N I  + 
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFIS 441

Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
               +   +L ++  + +             +  E+ +         +  ++S +  L  
Sbjct: 442 KAIQR-LTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR---------PGLFNYFKHLTFLEL 220
           ++L +       P    DL  L  L++  NR                  +    +    +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 221 SENWISSL-NGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG 279
             N +          ++  L  L    N +  +   +F     L  L L  N I+E+   
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPED 613

Query: 280 TFAGLTNLTALFLNNNLLRYL-DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP----- 333
             A    +  L  ++N L+Y+ +    + +  +  +    NK+     +    +      
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 334 NLITLKLAKN 343
           N  T+ L+ N
Sbjct: 674 NASTVTLSYN 683

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (268), Expect = 3e-25
 Identities = 36/232 (15%), Positives = 77/232 (33%), Gaps = 30/232 (12%)

Query: 38  PFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP-------GKLFI 90
             D    ++   + L  N++     + F     ++ + L  N ++ +P          + 
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 91  STINLSTMDLSQNLIKTLPSTFFKGAI-RLTVVQLSYNAIESLPANVFHDLISLEELDLS 149
           +T  L+T+DL  N + +L   F    +  L+ + +SYN   S P    +    L+   + 
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIR 784

Query: 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLF 209
                                  + NRI +  P        L  L + +N +  +   L 
Sbjct: 785 HQ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL- 825

Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
                L  L++++N   S++              L  +  + I       ++
Sbjct: 826 --TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 12/122 (9%), Positives = 28/122 (22%), Gaps = 3/122 (2%)

Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
           +      G +      +  L L     +     +   L  L+ L   +++          
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 283 GLTNLTALFLNNNLLRYLDTKAFEPML-HLKKLQLDSNKLQYLATDSLSLLPNLITLKLA 341
                       + +R    K F      L    L  + +       +  +     + L 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLK 426

Query: 342 KN 343
             
Sbjct: 427 DT 428

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  179 bits (456), Expect = 4e-53
 Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 12/222 (5%)

Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL-FNYFKHLTFLELSENWISSLNGD 231
              ++  +P  +      LD   L +N LS +R         +L  L LS N ++ ++ +
Sbjct: 26  SKQQLPNVPQSLPSYTALLD---LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82

Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
            F  + +L+ L L  N++ T+    F++LQ+LE L LY+N+I  +    F  +  L  L+
Sbjct: 83  AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142

Query: 292 LNNNLLRYLDTKAFEPMLHLKKLQ---LDSNKLQYLATDSLSLLPNL--ITLKLAKNPWH 346
           L+ N +     +  +    L KL    L SNKL+ L    L  LP      L L  NP  
Sbjct: 143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

Query: 347 CDC-AILYMARWLRANRRKV--WDSKPTCRGPGNLGGKSVED 385
           CDC      + W       V  +     C     L      D
Sbjct: 203 CDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLD 244

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  153 bits (387), Expect = 5e-43
 Identities = 70/259 (27%), Positives = 105/259 (40%), Gaps = 16/259 (6%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKD-AFTGLYKLT 72
           C   C C      LSC KQ +  +P    +P    ++DL  N LS L  +   T L  L 
Sbjct: 12  CPANCLCASN--ILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLH 67

Query: 73  ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
            L L  NHL+ +  + F+   NL  +DLS N + TL    F     L V+ L  N I  +
Sbjct: 68  SLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV 127

Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK---LQSNRINQLPPGIFDDLK 189
             N F D+  L++L LSQN ++            L +L    L SN++ +LP      L 
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 190 YL--DFLSLRNNRLSFIRPGLFNYFKHLTFLELS-----ENWISSLNGDEFSQLTSLKEL 242
               + L L NN L      L+  F H  + +LS     +  +  ++  +   + SL   
Sbjct: 188 AWVKNGLYLHNNPLE-CDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFF 246

Query: 243 HLGQNYIETIPAGSFANLQ 261
           +  +       A     L 
Sbjct: 247 NCSEYKESAWEAHLGDTLT 265

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  143 bits (361), Expect = 3e-39
 Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 27/206 (13%)

Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL-PSTFFKGAIRLTVVQLSYNAIE 130
             L   K  L  +P  L   T  L   DLS N +  L           L  + LS+N + 
Sbjct: 21  NILSCSKQQLPNVPQSLPSYTALL---DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
            + +  F  + +L  LDLS N L ++    FS + +L+ L L +N I  +    F+D+  
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250
           L  L L  N++S     L                       + ++L  L  L L  N ++
Sbjct: 138 LQKLYLSQNQISRFPVELI---------------------KDGNKLPKLMLLDLSSNKLK 176

Query: 251 TIPAGSFANLQSLEK--LFLYSNNIQ 274
            +P      L +  K  L+L++N ++
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  181 bits (462), Expect = 1e-52
 Identities = 58/299 (19%), Positives = 111/299 (37%), Gaps = 39/299 (13%)

Query: 62  KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTV 121
            +      +    K+  + L +    L  S  N+  +DLS N +  + +       +L +
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           + LS N +          L +L  LDL+ N +  +  G      S++ L   +N I+++ 
Sbjct: 63  LNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVS 115

Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSLK 240
                  K +    L NN+++ +R         + +L+L  N I ++N  +  +   +L+
Sbjct: 116 CSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
            L+L  N+I  +          L+ L L SN +  +    F     +T + L NN L  +
Sbjct: 173 HLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI 229

Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLR 359
           +                          +L    NL    L  N +HC     + ++  R
Sbjct: 230 E-------------------------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  175 bits (446), Expect = 2e-50
 Identities = 48/297 (16%), Positives = 95/297 (31%), Gaps = 16/297 (5%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
           ++  +  + L           + + EL L  N LS++          L  ++LS N++  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
                 +    L  + L+ N ++ L         S+E L  + N ++ +           
Sbjct: 73  TLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQ---GK 122

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG-LFNYFKHLTFLELSENWIS 226
           K + L +N+I  L          + +L L+ N +  +    L      L  L L  N+I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            + G        LK L L  N +  +    F +   +  + L +N +  +         N
Sbjct: 183 DVKGQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQN 238

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           L    L  N       + F    + +   +    ++ L   +               
Sbjct: 239 LEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (372), Expect = 8e-40
 Identities = 48/315 (15%), Positives = 87/315 (27%), Gaps = 37/315 (11%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
             +    N +S +S     G      + L  N ++ L          +  +DL  N I T
Sbjct: 102 ETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 108 LP-STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
           +  +     +  L  + L YN I  +   V      L+ LDLS N L  +    F     
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAG 215

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           +  + L++N++  +        + L+   LR N         F + K+     +++  + 
Sbjct: 216 VTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVK 273

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ------------------------- 261
            L G    + T     H G    E +PA     L                          
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 262 ---SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
                 ++       + +             L      L    +        L      +
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 319 NKLQYLATDSLSLLP 333
                L   +    P
Sbjct: 394 VGQIELQHATEEQSP 408

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 33/240 (13%), Positives = 61/240 (25%), Gaps = 8/240 (3%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
             I L  N+L  + K A      L    LR N       + F S  N     +++  +K 
Sbjct: 217 TWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKK 274

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISL-----EELDLSQNVLTSIQYGTFS 162
           L     +     T+        E LPA     LI+L       L    +    ++    +
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN 334

Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
                + +     +   +   +    +    L  +   L             L       
Sbjct: 335 QA-RQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQA 393

Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
                L      Q        + + Y E           ++    +Y +   +L      
Sbjct: 394 VGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENAR 453

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 81.4 bits (201), Expect = 5e-17
 Identities = 22/234 (9%), Positives = 66/234 (28%), Gaps = 9/234 (3%)

Query: 47  IRVIDLGINQLSTLS-KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
           +   DL  N     + +D F+   ++  +      + +L G+        +         
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 106 KTLPSTFFKGAIRLTVVQ-----LSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
           + LP+ F    I L   +        +  E L     +      E+D  +    ++    
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECEREN-QARQREIDALKEQYRTVIDQV 355

Query: 161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLEL 220
                +   L+ +   +++           LD    +      ++              +
Sbjct: 356 TLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

Query: 221 SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
            + +       +  Q  ++++  + Q+    +   +    +   +  L   +  
Sbjct: 416 VKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASAN 469

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 21/135 (15%), Positives = 37/135 (27%)

Query: 21  RPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH 80
           R E   LS    + E L  ++      R ID    Q  T+             L+ +K  
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKA 371

Query: 81  LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
           L E       +   L            L     + +    +  +     E          
Sbjct: 372 LDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

Query: 141 ISLEELDLSQNVLTS 155
            ++ + D+ Q+  T 
Sbjct: 432 NAIRDWDMYQHKETQ 446

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  169 bits (429), Expect = 1e-50
 Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 30/223 (13%)

Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
           +   + ++P  + + +  +    L  N +  I PG F+ +K L  ++LS N IS L  D 
Sbjct: 19  RGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA 75

Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
           F  L SL  L L  N I  +P   F  L SL+ L L +N I  L    F  L NL  L L
Sbjct: 76  FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135

Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAIL 352
            +N L+ +    F P                        L  + T+ LA+NP+ CDC + 
Sbjct: 136 YDNKLQTIAKGTFSP------------------------LRAIQTMHLAQNPFICDCHLK 171

Query: 353 YMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEG 394
           ++A +L  N  +   S   C  P  L  K +  +      C  
Sbjct: 172 WLADYLHTNPIET--SGARCTSPRRLANKRIGQIKSKKFRCSA 212

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  131 bits (332), Expect = 2e-36
 Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 4/162 (2%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
           C   C C    + + C  + + E+P +  +P  I  I L  N +  +   AF+   KL  
Sbjct: 5   CPAACTCSN--NIVDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
           + L  N +SEL    F    +L+++ L  N I  LP + F+G   L ++ L+ N I  L 
Sbjct: 61  IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
            + F DL +L  L L  N L +I  GTFS + +++ + L  N
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  127 bits (322), Expect = 5e-35
 Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 81  LSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL 140
           L+E+P  L  +   +    L QN IK +P   F    +L  + LS N I  L  + F  L
Sbjct: 23  LTEIPTNLPETITEI---RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79

Query: 141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
            SL  L L  N +T +    F G++SL+ L L +N+IN L    F DL  L+ LSL +N+
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139

Query: 201 LSFIRPGLFNYFKHLTFLELSEN 223
           L  I  G F+  + +  + L++N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  171 bits (437), Expect = 3e-50
 Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 21/298 (7%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  ++L  NQ++ +S    + L KLT L +  N ++++      +  NL  + L+++ I 
Sbjct: 68  LEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNIS 123

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +         ++  + L  N   S  + + + +  L  L ++++ +  +     + +  
Sbjct: 124 DISP--LANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTESKVKDVT--PIANLTD 178

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L  L L  N+I  + P     L  L + +   N+++ I P        L  L++  N I+
Sbjct: 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            L+    + L+ L  L +G N I  I A    +L  L+ L + SN I ++       L+ 
Sbjct: 235 DLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQ 288

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
           L +LFLNNN L   D +    + +L  L L  N +  +    L+ L  + +   A   
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  156 bits (396), Expect = 3e-44
 Identities = 60/294 (20%), Positives = 122/294 (41%), Gaps = 26/294 (8%)

Query: 50  IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLP 109
           +   INQ+   +      L +     L+K  ++++  +  +   +++ + ++   + ++ 
Sbjct: 8   LPAPINQIFPDA-----DLAEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVASIQ 60

Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR 169
               +    L  + L+ N I  +      +L+ L  L +  N +T I       + +L+ 
Sbjct: 61  G--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRE 114

Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           L L  + I+ + P    +L  +  L+L  N        L N    L +L ++E+ +  + 
Sbjct: 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSN-MTGLNYLTVTESKVKDV- 170

Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA 289
               + LT L  L L  N IE I     A+L SL     Y N I ++     A +T L +
Sbjct: 171 -TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 290 LFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           L + NN +   D      +  L  L++ +N++  +  +++  L  L  L +  N
Sbjct: 226 LKIGNNKIT--DLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  154 bits (392), Expect = 1e-43
 Identities = 64/297 (21%), Positives = 124/297 (41%), Gaps = 23/297 (7%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
                L    ++ +       L  +T+L +    ++ + G       NL  ++L+ N I 
Sbjct: 24  GIRAVLQKASVTDVV--TQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQIT 79

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +        ++LT + +  N I  + A    +L +L EL L+++ ++ I     + +  
Sbjct: 80  DISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS--PLANLTK 133

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           +  L L +N        +  ++  L++L++  +++  + P        L  L L+ N I 
Sbjct: 134 MYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            +     + LTSL       N I  I     AN+  L  L + +N I +L     A L+ 
Sbjct: 191 DI--SPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           LT L +  N +  ++  A + +  LK L + SN++  +    L+ L  L +L L  N
Sbjct: 245 LTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (374), Expect = 4e-41
 Identities = 59/252 (23%), Positives = 102/252 (40%), Gaps = 17/252 (6%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +R + L  + +S +S      L K+  L L  NH       L  +   L+ + ++++ +K
Sbjct: 112 LRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESKVK 168

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +          L  + L+YN IE +       L SL       N +T I     + M  
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTR 222

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L  LK+ +N+I  L P    +L  L +L +  N++S I          L  L +  N IS
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS 278

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            +     + L+ L  L L  N +          L +L  LFL  N+I ++     A L+ 
Sbjct: 279 DI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334

Query: 287 LTALFLNNNLLR 298
           + +    N +++
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  133 bits (337), Expect = 9e-36
 Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 19/249 (7%)

Query: 95  LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
            +T+      I  +               L   ++  +      +L S+ +L ++   + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 155 SIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKH 214
           SIQ      + +L+ L L  N+I  + P    +L  L  L +  N+++ I         +
Sbjct: 58  SIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTN 111

Query: 215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
           L  L L+E+ IS +     + LT +  L+LG N+  +  +   +N+  L  L +  + ++
Sbjct: 112 LRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
           ++     A LT+L +L LN N +  +       +  L       N++  +    ++ +  
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDI--TPVANMTR 222

Query: 335 LITLKLAKN 343
           L +LK+  N
Sbjct: 223 LNSLKIGNN 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 7e-33
 Identities = 44/229 (19%), Positives = 95/229 (41%), Gaps = 15/229 (6%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  ++LG N   +      + +  L  L + ++ + ++      +  +L ++ L+ N I+
Sbjct: 134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +          L       N I  +      ++  L  L +  N +T +     + +  
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQ 244

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L  L++ +N+I+ +      DL  L  L++ +N++S I     N    L  L L+ N + 
Sbjct: 245 LTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLG 300

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
           + + +    LT+L  L L QN+I  I     A+L  ++     +  I++
Sbjct: 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  163 bits (414), Expect = 2e-48
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 31/224 (13%)

Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHLTFLELSENWISSLNGD 231
            + ++N++P  I      L    L NN  + +   G+F     L  +  S N I+ +   
Sbjct: 19  SNQKLNKIPEHIPQYTAELR---LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75

Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
            F   + + E+ L  N +E +    F  L+SL+ L L SN I  +   +F GL+++  L 
Sbjct: 76  AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135

Query: 292 LNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI 351
           L +N +  +   AF+ +  L  L L +N                        P++C+C +
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLAN------------------------PFNCNCYL 171

Query: 352 LYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEG 394
            ++  WLR  R       P C+ P  L    ++D++  D  C+ 
Sbjct: 172 AWLGEWLRKKRIVT--GNPRCQKPYFLKEIPIQDVAIQDFTCDD 213

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  125 bits (316), Expect = 3e-34
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRIN 178
           T V  S   +  +P ++        EL L+ N  T ++  G F  +  L+++   +N+I 
Sbjct: 14  TTVDCSNQKLNKIPEHIPQYT---AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
            +  G F+    ++ + L +NRL  ++  +F   + L  L L  N I+ +  D F  L+S
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           ++ L L  N I T+  G+F  L SL  L L +N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  122 bits (309), Expect = 4e-33
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 5/163 (3%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDA-FTGLYKLT 72
           C   CRC     T+ C  Q + ++P    IP     + L  N+ + L     F  L +L 
Sbjct: 5   CPEKCRCEGT--TVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLR 60

Query: 73  ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
           ++    N ++++    F     ++ + L+ N ++ +    FKG   L  + L  N I  +
Sbjct: 61  KINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
             + F  L S+  L L  N +T++  G F  ++SL  L L +N
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  121 bits (305), Expect = 1e-32
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 81  LSELPGKLFISTINLSTMDLSQNLIKTLPST-FFKGAIRLTVVQLSYNAIESLPANVFHD 139
           L+++P  +   T  L    L+ N    L +T  FK   +L  +  S N I  +    F  
Sbjct: 23  LNKIPEHIPQYTAEL---RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79

Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
              + E+ L+ N L ++Q+  F G+ SLK L L+SNRI  +    F  L  +  LSL +N
Sbjct: 80  ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 200 RLSFIRPGLFNYFKHLTFLELSEN 223
           +++ + PG F+    L+ L L  N
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLAN 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  153 bits (389), Expect = 1e-44
 Identities = 49/284 (17%), Positives = 95/284 (33%), Gaps = 58/284 (20%)

Query: 13  CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
           C   PC C  E        +D++ +P    +P   + + L    L T+   AF+ L  ++
Sbjct: 3   CSSPPCECHQEE-DFRVTCKDIQRIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNIS 58

Query: 73  ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
            +                         +S +                         ++ L
Sbjct: 59  RI------------------------YVSID-----------------------VTLQQL 71

Query: 133 PANVFHDLISLEELDLSQN-VLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF-DDLKY 190
            ++ F++L  +  +++     LT I       +  LK L + +  +   P          
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI 131

Query: 191 LDFLSL-RNNRLSFIRPGLFNYFKHLTF-LELSENWISSLNGDEFSQLTSLKELHLGQN- 247
              L +  N  ++ I    F    + T  L+L  N  +S+ G  F+  T L  ++L +N 
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-GTKLDAVYLNKNK 190

Query: 248 YIETIPAGSFANLQS-LEKLFLYSNNIQELHAGTFAGLTNLTAL 290
           Y+  I   +F  + S    L +   ++  L +     L  L A 
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  146 bits (371), Expect = 6e-42
 Identities = 49/234 (20%), Positives = 85/234 (36%), Gaps = 14/234 (5%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN-RI 177
               +++   I+ +P+       S + L L +  L +I    FS + ++ R+ +  +  +
Sbjct: 13  EEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 178 NQLPPGIFDDLKYLDFLSLRNNR-LSFIRPGLFNYFKHLTFLELSENWISSLNGDEF-SQ 235
            QL    F +L  +  + +RN R L++I P        L FL +    +           
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 236 LTSLKELHLGQN-YIETIPAGSFANLQS-LEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
                 L +  N Y+ +IP  +F  L +    L LY+N    +    F G          
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188

Query: 294 NNLLRYLDTKAFEPMLH-LKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346
           N  L  +D  AF  +      L +    +  L +  L  L  LI      N W 
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR----NTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  102 bits (257), Expect = 1e-25
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 7/157 (4%)

Query: 48  RVIDLGINQ-LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI-STINLSTMDLSQNL- 104
             I++   + L+ +  DA   L  L  L +    L   P    + ST     ++++ N  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 105 IKTLPSTFFKGAIRLTVV-QLSYNAIESLPANVFHDLISLEELDLSQN-VLTSIQYGTFS 162
           + ++P   F+G    T+  +L  N   S+    F+    L+ + L++N  LT I    F 
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFG 201

Query: 163 GMYS-LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
           G+YS    L +    +  LP    + LK L   +   
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  153 bits (388), Expect = 3e-44
 Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 30/222 (13%)

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
           ++L LQS  +  L    F  L  L +L+L  N+L  +  G+F+    L  L L+ N ++S
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
           L    F  LT L +L+LG N ++++P+G F  L  L++L L +N +Q + AG F  LTNL
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
             L L+ N L+ +   AF+    L KLQ                     T+ L  N + C
Sbjct: 158 QTLSLSTNQLQSVPHGAFD---RLGKLQ---------------------TITLFGNQFDC 193

Query: 348 DCA-ILYMARWLRANRRKV--WDSKPTCRGPGNL---GGKSV 383
               ILY+++W+R N  KV     +     P  +    GK V
Sbjct: 194 SRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVV 235

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  134 bits (338), Expect = 5e-37
 Identities = 48/152 (31%), Positives = 77/152 (50%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
             + L    + +L    F  L  L  L+L  N L ++  G F  +  L  L L +N++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
           LP G+FD L  LD L L  N+L  +  G+F+    L  L L+ N + S+    F +LT+L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           + L L  N ++++P G+F  L  L+ + L+ N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  129 bits (327), Expect = 2e-35
 Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 4/188 (2%)

Query: 14  CE--GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKL 71
           CE    C C      + C  + ++ +P    IP D   +DL    L+TLS   F GL KL
Sbjct: 4   CETVTGCTCNEGKKEVDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKL 61

Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
           T L L  N L  L   +F     L T+ L+ N + +LP   F    +L  + L  N ++S
Sbjct: 62  TWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS 121

Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
           LP+ VF  L  L+EL L+ N L SI  G F  + +L+ L L +N++  +P G FD L  L
Sbjct: 122 LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181

Query: 192 DFLSLRNN 199
             ++L  N
Sbjct: 182 QTITLFGN 189

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (406), Expect = 1e-43
 Identities = 61/298 (20%), Positives = 115/298 (38%), Gaps = 29/298 (9%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
            +++   NQL      AF    KL  L L  N ++E+P      T  +  +  + N +K 
Sbjct: 333 GMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 108 LPSTFFKGAIR-LTVVQLSYNAIESLPANVFHD-------LISLEELDLSQNVLTSIQYG 159
           +P+ F   ++  ++ +  SYN I S+    F          I++  ++LS N ++     
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 160 TFSGMYSLKRLKLQSNRINQLPPGI-------FDDLKYLDFLSLRNNRLSFIRPGL-FNY 211
            FS    L  + L  N + ++P          F +   L  + LR N+L+ +        
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511

Query: 212 FKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI-------ETIPAGSFANLQSLE 264
             +L  ++LS N  S     +    ++LK   +               P        SL 
Sbjct: 512 LPYLVGIDLSYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLT 569

Query: 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
           +L + SN+I++++        N++ L + +N    +D     P +      L  +K Q
Sbjct: 570 QLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  159 bits (405), Expect = 1e-43
 Identities = 58/328 (17%), Positives = 116/328 (35%), Gaps = 36/328 (10%)

Query: 48  RVIDLGINQLSTLSKDA--------FTGLYKLTELKLRKNHLSELPGKLFISTI-NLSTM 98
           ++I++  N+  +  +               K+  + +  N+L   P +  +  +  L  +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 99  DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-Q 157
           +   N ++     F    I+L  + L+YN I  +PAN       +E L  + N L  I  
Sbjct: 336 ECLYNQLEGKLPAFGS-EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDD-------LKYLDFLSLRNNRLSFIRPGLFN 210
                 +  +  +    N I  +    FD           +  ++L NN++S     LF+
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454

Query: 211 YFKHLTFLELSENWISSLNGD-------EFSQLTSLKELHLGQNYIETIPAG-SFANLQS 262
               L+ + L  N ++ +  +        F     L  + L  N +  +        L  
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY 514

Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL----RYLDT--KAFEPMLHLKKLQL 316
           L  + L  N+  +         + L    + N       R L    +       L +LQ+
Sbjct: 515 LVGIDLSYNSFSKFPTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKNP 344
            SN ++ +   +  + PN+  L +  NP
Sbjct: 574 GSNDIRKV---NEKITPNISVLDIKDNP 598

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  156 bits (396), Expect = 2e-42
 Identities = 55/328 (16%), Positives = 110/328 (33%), Gaps = 29/328 (8%)

Query: 42  IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDL 100
            I       +    Q        +  L  LT++++       +LP  L  +   +  +++
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINV 280

Query: 101 SQNLIKTLPSTFFKGAI--------RLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQN 151
           + N   +                  ++ ++ + YN +++ P       +  L  L+   N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 152 VLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLF-N 210
            L       F     L  L L  N+I ++P       + ++ LS  +N+L +I       
Sbjct: 341 QLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 211 YFKHLTFLELSENWISSLNGDEFS-------QLTSLKELHLGQNYIETIPAGSFANLQSL 263
               ++ ++ S N I S++G  F        +  ++  ++L  N I   P   F+    L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 264 EKLFLYSNNIQELHAGT-------FAGLTNLTALFLNNNLLRYL-DTKAFEPMLHLKKLQ 315
             + L  N + E+   +       F     LT++ L  N L  L D      + +L  + 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 316 LDSNKLQYLATDSLSLLPNLITLKLAKN 343
           L  N               L    +   
Sbjct: 520 LSYNSFSKF-PTQPLNSSTLKGFGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (360), Expect = 2e-37
 Identities = 51/280 (18%), Positives = 93/280 (33%), Gaps = 44/280 (15%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI-NLSTMDLSQNLIK 106
             ++L  NQ++ +  +      ++  L    N L  +P      ++  +S +D S N I 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 107 TLPSTFFKG-------AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
           ++    F          I ++ + LS N I   P  +F     L  ++L  N+LT I   
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 160 T-------FSGMYSLKRLKLQSNRINQLPPGI-FDDLKYLDFLSLRNNRLSFIRPGLFNY 211
           +       F   Y L  + L+ N++ +L        L YL  + L  N  S       N 
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN- 534

Query: 212 FKHLTFLELSENWISSLNG------DEFSQLTSLKELHLGQNYIETIPAGSFANLQSL-- 263
              L    +     +  N       +  +   SL +L +G N I  +      N+  L  
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI 594

Query: 264 -------------------EKLFLYSNNIQELHAGTFAGL 284
                                  L+ +  Q++       +
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  131 bits (331), Expect = 2e-33
 Identities = 47/316 (14%), Positives = 104/316 (32%), Gaps = 26/316 (8%)

Query: 46  DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
           D+    +  +      K +     K T++    N+++ +   +   T  L    +  +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT-KLRQFYMGNSPF 218

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQ-NVLTSIQYGTFSGM 164
                               Y          + +L  L ++++     LT +       +
Sbjct: 219 VAENICEA-----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKAL 272

Query: 165 YSLKRLKLQSNRINQLPPGI--------FDDLKYLDFLSLRNNRL-SFIRPGLFNYFKHL 215
             ++ + +  NR                    + +  + +  N L +F         K L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
             LE   N +       F     L  L+L  N I  IPA      + +E L    N ++ 
Sbjct: 333 GMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 276 LHAGTFAG-LTNLTALFLNNNLLRYLDTKAFEPM-------LHLKKLQLDSNKLQYLATD 327
           +     A  ++ ++A+  + N +  +D K F+P+       +++  + L +N++     +
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 328 SLSLLPNLITLKLAKN 343
             S    L ++ L  N
Sbjct: 452 LFSTGSPLSSINLMGN 467

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (312), Expect = 5e-31
 Identities = 36/316 (11%), Positives = 93/316 (29%), Gaps = 28/316 (8%)

Query: 48  RVIDLGINQLST--LSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
                         +  D       L +  +  +   +   K    T+  + +    N I
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY 165
             +     +   +L    +  +   +       +  + E     +             + 
Sbjct: 196 TFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW-----DNLK 249

Query: 166 SLKRLKLQS-NRINQLPPGIFDDLKYLDFLSLRNNRL--------SFIRPGLFNYFKHLT 216
            L  +++ +   + +LP  +   L  +  +++  NR          +         + + 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 217 FLELSENWISSLN-GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
            + +  N + +        ++  L  L    N +E     +F +   L  L L  N I E
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367

Query: 276 LHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML-HLKKLQLDSNKLQYLATDSLSLLP- 333
           + A        +  L   +N L+Y+        +  +  +    N++  +   +   L  
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 334 ------NLITLKLAKN 343
                 N+ ++ L+ N
Sbjct: 428 TPFKGINVSSINLSNN 443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  119 bits (300), Expect = 2e-29
 Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 22/309 (7%)

Query: 50  IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI-NLSTMDLSQNLIKTL 108
           + L     S    DA   L +L  L L  +             I    + +  Q +    
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 109 PSTFFKGAIRLTVVQLSYNAIESLPA-----NVFHDLISLEELDLSQNVLTSIQYGTFSG 163
             TF     R     L  + I S P            +   ++    N +T +       
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-KAVMR 204

Query: 164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
           +  L++  + ++             +  +  +    +        ++  K LT +E+   
Sbjct: 205 LTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPA--------GSFANLQSLEKLFLYSNNIQE 275
              +        L  ++ +++  N   +                 + ++ +++  NN++ 
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 276 LHA-GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
                +   +  L  L    N L      AF   + L  L L  N++  +  +       
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCGFTEQ 378

Query: 335 LITLKLAKN 343
           +  L  A N
Sbjct: 379 VENLSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (283), Expect = 3e-27
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 48/259 (18%)

Query: 48  RVIDLGINQLSTLSKDAFTG-LYKLTELKLRKNHLSELPGKLFIS-------TINLSTMD 99
             +    N+L  +        +  ++ +    N +  + GK F          IN+S+++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV-------FHDLISLEELDLSQNV 152
           LS N I   P   F     L+ + L  N +  +P N        F +   L  +DL  N 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499

Query: 153 LTSIQYG-TFSGMYSLKRLKLQSNRINQLPPGI--------------------------- 184
           LT +      + +  L  + L  N  ++ P                              
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 185 --FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL 242
                   L  L + +N +  +   +     +++ L++ +N   S++             
Sbjct: 560 EGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 243 HLGQNYIETIPAGSFANLQ 261
            L  +  + I      +++
Sbjct: 617 MLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 34/261 (13%), Positives = 74/261 (28%), Gaps = 37/261 (14%)

Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTF-SGMYSLKRLKLQSNR 176
           R+T + L          +    L  LE L L  +     +      G+ +    + +   
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 177 INQLPPGIFDDLKYLDFLSLRNNRLSFIR-----PGLFNYFKHLTFLELSENWISSLNGD 231
                    D     DF  L  + ++                  T +    N I+ ++  
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS-K 200

Query: 232 EFSQLTSLKELHLGQNYI--------------------ETIPAGSFANLQSLEKLFLYSN 271
              +LT L++ ++G +                      +T     + NL+ L  + +Y+ 
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNC 259

Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP--------MLHLKKLQLDSNKLQY 323
                       L  +  + +  N     +    +            ++ + +  N L+ 
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 324 L-ATDSLSLLPNLITLKLAKN 343
                SL  +  L  L+   N
Sbjct: 320 FPVETSLQKMKKLGMLECLYN 340

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSF----ANLQSLEKLFLY 269
            +T L L     S    D   QLT L+ L LG +  +           +   S E+    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 270 SNNIQ--ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATD 327
             + Q   +        ++L    +N++  +    K+    L   ++   SN + ++ + 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SK 200

Query: 328 SLSLLPNLITLKLAKNP 344
           ++  L  L    +  +P
Sbjct: 201 AVMRLTKLRQFYMGNSP 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 6/120 (5%)

Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF-AGLTNLT 288
           G   +    +  L L           +   L  LE L L S+  +         G++   
Sbjct: 74  GVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 289 ALFLNNNLLRYLDTKAFEP-----MLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           +      +  +      +         L K  ++S+  Q     S  +      +    N
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  158 bits (401), Expect = 1e-43
 Identities = 59/330 (17%), Positives = 117/330 (35%), Gaps = 35/330 (10%)

Query: 54  INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI---NLSTMDLSQNLIKTLPS 110
           ++ L+ L  +       L  ++   N    +   ++ +T+   ++S + L   L      
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 111 TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL 170
                   L++ Q+  +      + ++    ++   + + +    +     S +     L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI--RPGLFNYFKHLTFLELSENWI-SS 227
              +N +          L  L+ L L+ N+L  +     +    K L  L++S+N +   
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
               + S   SL  L++  N +             ++ L L+SN I+ +       L  L
Sbjct: 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVV-KLEAL 446

Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
             L + +N L+ +    F+                         L +L  + L  NPW C
Sbjct: 447 QELNVASNQLKSVPDGIFDR------------------------LTSLQKIWLHTNPWDC 482

Query: 348 DCA-ILYMARWLRANRRKVWDSKPTCRGPG 376
            C  I Y++RWL  N +K   S   C G G
Sbjct: 483 SCPRIDYLSRWLNKNSQKEQGS-AKCSGSG 511

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  137 bits (346), Expect = 4e-36
 Identities = 57/343 (16%), Positives = 109/343 (31%), Gaps = 45/343 (13%)

Query: 43  IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
           +     ++++  N +S L       L KL  L +  N +  L   +F     L  +DLS 
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTF 161
           N +  +          L  + LS+NA ++LP    F ++  L+ L LS   L        
Sbjct: 79  NKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 162 SGMY-------------------SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
           + +                     L+    +S  I       F  +  +   ++ N  LS
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 203 FIRPGLF-----------------NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
            I+  L                      +LT   +   W S +   +    T++    + 
Sbjct: 196 NIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS 255

Query: 246 QNYIETIPA-----GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
              ++          S  +L++L    + S+      +  +   +N+       +  R +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 301 DTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
                  +     L   +N L     ++   L  L TL L  N
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  136 bits (343), Expect = 1e-35
 Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 6/231 (2%)

Query: 45  VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
             I  + L           + T L  L+  ++  +        ++    N++  + + + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY--GTFS 162
            + +             +  S N +          L  LE L L  N L  +       +
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 163 GMYSLKRLKLQSNRINQ-LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS 221
            M SL++L +  N ++     G     K L  L++ +N L+            +  L+L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429

Query: 222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN 272
            N I S+      +L +L+EL++  N ++++P G F  L SL+K++L++N 
Sbjct: 430 SNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  103 bits (259), Expect = 2e-24
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 15/265 (5%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
           +   +D S+N +  +P    +   + T++ +S N I  L  +    L  L  L +S N +
Sbjct: 1   SEFLVDRSKNGLIHVPKDLSQ---KTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI-RPGLFNYF 212
             +    F     L+ L L  N++ ++          L  L L  N    +     F   
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 213 KHLTFLELSENWISSLNGDEFSQLTSLKE-LHLGQNYIETIPAGSFANL--QSLEKLFLY 269
             L FL LS   +   +    + L   K  L LG+ Y E        +   +SL  +F  
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 270 SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
           +     +   +   + NL    +   L     +     +  L+     SN    L  +++
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN----LTLNNI 230

Query: 330 SLLPNLITLKLAKNPWHCDCAILYM 354
               N    ++ +  WH       +
Sbjct: 231 ETTWNSFI-RILQLVWHTTVWYFSI 254

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 38/160 (23%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 43  IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP--GKLFISTINLSTMDL 100
                  +D   N L+    +    L +L  L L+ N L EL    ++     +L  +D+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 101 SQN-LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
           SQN +              L  + +S N +             ++ LDL  N + SI   
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQ 439

Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
               + +L+ L + SN++  +P GIFD L  L  + L  N
Sbjct: 440 VVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  156 bits (397), Expect = 2e-43
 Identities = 83/298 (27%), Positives = 134/298 (44%), Gaps = 25/298 (8%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  I +  NQ++ ++      L  LT L L  N ++++      +  NL+ ++LS N I 
Sbjct: 92  LVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 147

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            + +    G   L  +       +  P     +L +LE LD+S N ++ I     + + +
Sbjct: 148 DISA--LSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVSDIS--VLAKLTN 200

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L+ L   +N+I+ + P     L  LD LSL  N+L  I         +LT L+L+ N IS
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 256

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
           +L     S LT L EL LG N I  I     A L +L  L L  N ++++     + L N
Sbjct: 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
           LT L L  N +   D      +  L++L   +NK+  +   SL+ L N+  L    N 
Sbjct: 311 LTYLTLYFNNIS--DISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ 364

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (387), Expect = 5e-42
 Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 25/300 (8%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  + L  NQ++ +       L  L  L+L  N +S++         +L  +     +  
Sbjct: 114 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD 169

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
             P         L  + +S N +  +       L +LE L  + N ++ I       + +
Sbjct: 170 LKP---LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L  L L  N++  +       L  L  L L NN++S + P   +    LT L+L  N IS
Sbjct: 223 LDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
           ++     + LT+L  L L +N +E I     +NL++L  L LY NNI ++     + LT 
Sbjct: 279 NI--SPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTK 332

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH 346
           L  LF  NN +  +   +   + ++  L    N++  L    L+ L  +  L L    W 
Sbjct: 333 LQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQAWT 388

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (360), Expect = 3e-38
 Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 23/297 (7%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           ++ +  G NQ++ L       L  L  L +  N +S++         NL ++  + N I 
Sbjct: 158 LQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQIS 212

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +          L  + L+ N ++ +       L +L +LDL+ N ++++     SG+  
Sbjct: 213 DITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA--PLSGLTK 266

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L  LKL +N+I+ + P     L  L  L L  N+L  I P   +  K+LT+L L  N IS
Sbjct: 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            ++    S LT L+ L    N +  +   S ANL ++  L    N I +L     A LT 
Sbjct: 323 DISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTR 376

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           +T L LN+             +     ++  +  L  +A  ++S   +     +  N
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWN 431

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  130 bits (330), Expect = 5e-34
 Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 21/250 (8%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL 153
                 L +  +    S       ++T +Q     I+S+       L +L +++ S N L
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQL 80

Query: 154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK 213
           T I       +  L  + + +N+I  + P    +L  L  L+L NN+++ I P       
Sbjct: 81  TDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLT 134

Query: 214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI 273
           +L  LELS N IS +     S LTSL++L  G    +  P    ANL +LE+L + SN +
Sbjct: 135 NLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKP---LANLTTLERLDISSNKV 189

Query: 274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP 333
            ++     A LTNL +L   NN +   D      + +L +L L+ N+L+ +   +L+ L 
Sbjct: 190 SDI--SVLAKLTNLESLIATNNQIS--DITPLGILTNLDELSLNGNQLKDI--GTLASLT 243

Query: 334 NLITLKLAKN 343
           NL  L LA N
Sbjct: 244 NLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (321), Expect = 9e-33
 Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 18/259 (6%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
             +    NQ+S ++      L  L EL L  N L ++      S  NL+ +DL+ N I  
Sbjct: 202 ESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISN 257

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
           L      G  +LT ++L  N I ++       L +L  L+L++N L  I     S + +L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNL 311

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
             L L  N I+ + P     L  L  L   NN++S +         ++ +L    N IS 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
           L     + LT + +L L        P    AN+     +   +  +      T +   + 
Sbjct: 368 L--TPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAP--ATISDGGSY 423

Query: 288 TALFLNNNLLRYLDTKAFE 306
           T   +  NL  Y +  ++ 
Sbjct: 424 TEPDITWNLPSYTNEVSYT 442

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  150 bits (382), Expect = 3e-43
 Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 31/247 (12%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
               L   ++        ++L S++++  + + + S+       + +++ L L  N+++ 
Sbjct: 22  IKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD 77

Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
           +      +L  L +L L  N+L  +  G+F+   +L  L L EN + SL    F +LT+L
Sbjct: 78  I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY 299
             L+L  N ++++P G F  L +L +L L  N +Q L  G F  LT L  L L  N L+ 
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195

Query: 300 LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWL 358
           +    F+    L  LQ                      + L  NPW C C  I Y++ W+
Sbjct: 196 VPDGVFD---RLTSLQ---------------------YIWLHDNPWDCTCPGIRYLSEWI 231

Query: 359 RANRRKV 365
             +   V
Sbjct: 232 NKHSGVV 238

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  121 bits (306), Expect = 4e-32
 Identities = 61/255 (23%), Positives = 100/255 (39%), Gaps = 53/255 (20%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           P     E    +  K+ + +          I  I    + + ++       L  +  L L
Sbjct: 14  PDDAFAETIKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLAL 70

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
             N L ++         NL+ + L+ N +++LP+  F     L  + L  N ++SLP  V
Sbjct: 71  GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128

Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSL 196
           F  L +L  L+L+ N L S                        LP G+FD L  L  L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQS------------------------LPKGVFDKLTNLTELDL 164

Query: 197 RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256
             N+L  +  G+F+                        +LT LK+L L QN ++++P G 
Sbjct: 165 SYNQLQSLPEGVFD------------------------KLTQLKDLRLYQNQLKSVPDGV 200

Query: 257 FANLQSLEKLFLYSN 271
           F  L SL+ ++L+ N
Sbjct: 201 FDRLTSLQYIWLHDN 215

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  135 bits (343), Expect = 7e-36
 Identities = 64/315 (20%), Positives = 98/315 (31%), Gaps = 34/315 (10%)

Query: 32  QDMEELPFDQIIPVDI--RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF 89
           +  +   F+   P D     +       +T +      L  LT L    + ++++ G   
Sbjct: 4   KAGQTQSFNDWFPDDNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITDMTG--I 60

Query: 90  ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS 149
                L+ +  + N I TL          LT +    N + +L       L  L  L+  
Sbjct: 61  EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD 114

Query: 150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLF 209
            N LT +     S    L  L    N + ++          L  L    N+   I     
Sbjct: 115 TNKLTKL---DVSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDV 166

Query: 210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY 269
                LT L+ S N I+ L+    SQ   L  L+   N I  +          L  L   
Sbjct: 167 TPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCS 220

Query: 270 SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL 329
           SN + E+       LT LT    + N L  LD         L  L      L  +    L
Sbjct: 221 SNKLTEI---DVTPLTQLTYFDCSVNPLTELDVSTLS---KLTTLHCIQTDLLEI---DL 271

Query: 330 SLLPNLITLKLAKNP 344
           +    LI  +     
Sbjct: 272 THNTQLIYFQAEGCR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  133 bits (337), Expect = 4e-35
 Identities = 55/314 (17%), Positives = 101/314 (32%), Gaps = 45/314 (14%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  +    N ++TL     +    LT L    N L+ L          L+ ++   N + 
Sbjct: 66  LTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLT 119

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            L          LT +  + N +  +          L ELD   N   +      +    
Sbjct: 120 KLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK--LDVTPQTQ 171

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L  L    N+I +L        K L+ L+   N ++ +     N    LTFL+ S N ++
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT 225

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE----------------KLFLYS 270
            ++    + LT L       N +  +   + + L +L                  ++  +
Sbjct: 226 EID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA 282

Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS 330
              +++        T L  L      +  LD         L  L L++ +L  L    +S
Sbjct: 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTEL---DVS 336

Query: 331 LLPNLITLKLAKNP 344
               L +L      
Sbjct: 337 HNTKLKSLSCVNAH 350

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  128 bits (324), Expect = 3e-33
 Identities = 53/338 (15%), Positives = 105/338 (31%), Gaps = 49/338 (14%)

Query: 22  PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHL 81
             +  L+C    +  L    +    +  ++   N+L+ L     +    LT L   +N L
Sbjct: 85  TNLTYLACDSNKLTNLDVTPLT--KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTL 139

Query: 82  SELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI 141
           +E+          L+ +D   N   T          +LT +  S+N I  L         
Sbjct: 140 TEIDVSHNT---QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD---VSQNK 191

Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
            L  L+   N +T +     +    L  L   SN++ ++       L  L +     N L
Sbjct: 192 LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPL 245

Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLN-------------------GDEFSQLTSLKEL 242
           + +          LT L   +  +  ++                     + +  T L  L
Sbjct: 246 TELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL 302

Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT 302
                 I  +     +    L  L+L +  + EL     +  T L +L   N  ++    
Sbjct: 303 DCQAAGITELD---LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFS- 355

Query: 303 KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340
            +   +  L        +   +  ++L+     I +  
Sbjct: 356 -SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP 392

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (273), Expect = 2e-26
 Identities = 43/250 (17%), Positives = 80/250 (32%), Gaps = 26/250 (10%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  +D   N+++ L     +    L  L    N++++L        I L+ +D S N + 
Sbjct: 172 LTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLT 225

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +         +LT    S N +  L       L  L  L   Q  L  I     +    
Sbjct: 226 EID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEI---DLTHNTQ 276

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L   +       ++          L  L  +   ++ +     +    L +L L+   ++
Sbjct: 277 LIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELT 331

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            L+    S  T LK L     +I+     S   + +L   F        +   T     +
Sbjct: 332 ELD---VSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTITMPKETLT-NNS 385

Query: 287 LTALFLNNNL 296
           LT     + L
Sbjct: 386 LTIAVSPDLL 395

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  136 bits (344), Expect = 2e-35
 Identities = 55/343 (16%), Positives = 106/343 (30%), Gaps = 45/343 (13%)

Query: 39  FDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF--------- 89
            + +  + +  I L       L           T L +   H+                 
Sbjct: 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 90  -ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDL 148
            +  +N+  + +++ + +   +        L +  +           ++     +    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 149 SQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGL 208
           S +    I         S   L    N            LK L  L L+ N L      +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF-FKV 395

Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLT----SLKELHLGQNYIETIPAGSFANL-QSL 263
               K+++ LE  +  ++SLN   + +      S+  L+L  N    +    F  L   +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM---LTGSVFRCLPPKV 452

Query: 264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
           + L L++N I  +       L  L  L + +N L+ +    F+                 
Sbjct: 453 KVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDR---------------- 495

Query: 324 LATDSLSLLPNLITLKLAKNPWHCDC-AILYMARWLRANRRKV 365
                   L +L  + L  NPW C C  I Y++ W+  +   V
Sbjct: 496 --------LTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVV 530

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  133 bits (335), Expect = 2e-34
 Identities = 59/367 (16%), Positives = 115/367 (31%), Gaps = 46/367 (12%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           P     E   +    +++  +P D  +P   + + L  N +S L     + L +L  L+L
Sbjct: 27  PFSNELES-MVDYSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRL 83

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-AN 135
             N +  L   +F+   +L  +D+S N ++ +          L  + LS+N  + LP   
Sbjct: 84  SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMA---SLRHLDLSFNDFDVLPVCK 140

Query: 136 VFHDLISLEELDLSQNVLTSIQYGTFSGMY------------------------SLKRLK 171
            F +L  L  L LS      +     + ++                        +   L 
Sbjct: 141 EFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200

Query: 172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF----------KHLTFLELS 221
           L  +  +     +   +  L  L L N +L+         F           ++T   + 
Sbjct: 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260

Query: 222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN-----LQSLEKLFLYSNNIQEL 276
             W  S+   +F     ++ L++    I               L+SL    + +      
Sbjct: 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFS 320

Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLI 336
               ++    +    L+ +   ++             L    N          S L  L 
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ 380

Query: 337 TLKLAKN 343
           TL L +N
Sbjct: 381 TLILQRN 387

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  130 bits (328), Expect = 2e-33
 Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 10/252 (3%)

Query: 26  TLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP 85
           T  C  +  +      +  ++I  + +           + T L  L    ++        
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 86  GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE 145
             L+     ++   LS +    +           T +  + N            L  L+ 
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL----KYLDFLSLRNNRL 201
           L L +N L +          ++  L+     +N L    +D      + +  L+L +N L
Sbjct: 382 LILQRNGLKNFF-KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 202 SFIRPGLFNYF-KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
           +     +F      +  L+L  N I S+   + + L +L+EL++  N ++++P G F  L
Sbjct: 441 T---GSVFRCLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASNQLKSVPDGVFDRL 496

Query: 261 QSLEKLFLYSNN 272
            SL+ ++L+ N 
Sbjct: 497 TSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 8e-14
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 6/110 (5%)

Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL 297
               +      +  +P       ++L    L  N+I EL     + L+ L  L L++N +
Sbjct: 32  LESMVDYSNRNLTHVPKDLPPRTKALS---LSQNSISELRMPDISFLSELRVLRLSHNRI 88

Query: 298 RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC 347
           R LD   F     L+ L +  N+LQ ++   ++   +L  L L+ N +  
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMA---SLRHLDLSFNDFDV 135

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  133 bits (337), Expect = 2e-34
 Identities = 69/297 (23%), Positives = 122/297 (41%), Gaps = 44/297 (14%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
            V+++G + L+TL          +T L +  N+L+ LP         L T+++S N + +
Sbjct: 43  AVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPALPP----ELRTLEVSGNQLTS 95

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
           LP     G + L++       + +LP+        L +L +  N LTS+          L
Sbjct: 96  LPVL-PPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLTSLP----VLPPGL 143

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
           + L +  N++  LP    +    L  L   NN+L+ +          L  L +S+N ++S
Sbjct: 144 QELSVSDNQLASLPALPSE----LCKLWAYNNQLTSLPMLPSG----LQELSVSDNQLAS 195

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
           L     +  + L +L    N + ++P    A    L++L +  N +  L        + L
Sbjct: 196 L----PTLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSL----PVLPSEL 243

Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
             L ++ N L  L          L  L +  N+L  L  +SL  L +  T+ L  NP
Sbjct: 244 KELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  132 bits (333), Expect = 7e-34
 Identities = 68/298 (22%), Positives = 108/298 (36%), Gaps = 40/298 (13%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
           R +++  NQL++L      GL +L+       HL  LP         L  + +  N + +
Sbjct: 84  RTLEVSGNQLTSLP-VLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLTS 135

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
           LP         L  + +S N + SLPA        L +L    N LTS+          L
Sbjct: 136 LPVLPPG----LQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSL----PMLPSGL 183

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
           + L +  N++  LP    +    L  L   NNRL+ +          L  L +S N ++S
Sbjct: 184 QELSVSDNQLASLPTLPSE----LYKLWAYNNRLTSLPALPSG----LKELIVSGNRLTS 235

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
           L        + LKEL +  N + ++P         L  L +Y N +  L       L++ 
Sbjct: 236 LP----VLPSELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRLPES-LIHLSSE 286

Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
           T + L  N L        + +  +      S  +        S       L LA   W
Sbjct: 287 TTVNLEGNPLSERT---LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  127 bits (321), Expect = 2e-32
 Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 43/274 (15%)

Query: 70  KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
               L + ++ L+ LP  L     +++T+ +  N + +LP+   +    L  +++S N +
Sbjct: 41  GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPPE----LRTLEVSGNQL 93

Query: 130 ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK 189
            SLP      L+ L         L ++          L +L +  N++  LP        
Sbjct: 94  TSLPVL-PPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLPPG--- 142

Query: 190 YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI 249
            L  LS+ +N+L+ +          L  L    N ++SL        + L+EL +  N +
Sbjct: 143 -LQELSVSDNQLASLPALPSE----LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQL 193

Query: 250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML 309
            ++P         L KL+ Y+N +  L     A  + L  L ++ N L  L         
Sbjct: 194 ASLPTL----PSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNRLTSLP----VLPS 241

Query: 310 HLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
            LK+L +  N+L  L      L   L++L + +N
Sbjct: 242 ELKELMVSGNRLTSLP----MLPSGLLSLSVYRN 271

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (271), Expect = 9e-26
 Identities = 49/226 (21%), Positives = 85/226 (37%), Gaps = 35/226 (15%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
             V+ +  + + +LP  +      +  L +  N LTS+     +    L+ L++  N++ 
Sbjct: 42  NAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLT 94

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
            LP      L  L   S     L  +          L  L +  N ++SL          
Sbjct: 95  SLPVLPP-GLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLP----VLPPG 142

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
           L+EL +  N + ++PA        L KL+ Y+N +  L        + L  L +++N L 
Sbjct: 143 LQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSL----PMLPSGLQELSVSDNQLA 194

Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
            L          L KL   +N+L  L     +L   L  L ++ N 
Sbjct: 195 SLP----TLPSELYKLWAYNNRLTSLP----ALPSGLKELIVSGNR 232

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (270), Expect = 1e-25
 Identities = 56/255 (21%), Positives = 90/255 (35%), Gaps = 32/255 (12%)

Query: 43  IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
           +P  +  + +  NQL++L          L EL +  N L+ LP         L  +    
Sbjct: 119 LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPS----ELCKLWAYN 170

Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
           N + +LP         L  + +S N + SLP         L +L    N LTS+     +
Sbjct: 171 NQLTSLPMLPSG----LQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLP----A 218

Query: 163 GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
               LK L +  NR+  LP     +LK L    +  NRL+ +          L  L +  
Sbjct: 219 LPSGLKELIVSGNRLTSLPVLP-SELKELM---VSGNRLTSLPMLPSG----LLSLSVYR 270

Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
           N ++ L  +    L+S   ++L  N +      +   + S      YS  I        +
Sbjct: 271 NQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQALREITSAP---GYSGPIIRFDMAGAS 326

Query: 283 GLTNLTALFLNNNLL 297
                 AL L     
Sbjct: 327 APRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 4e-19
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 30/201 (14%)

Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
            EE      V+  ++    +G      L +  + +  LP  +   +  L    + +N L+
Sbjct: 21  AEESRGRAAVVQKMRACLNNG---NAVLNVGESGLTTLPDCLPAHITTLV---IPDNNLT 74

Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
            +          L  LE+S N ++SL       L  L        ++  +P         
Sbjct: 75  SLPALPPE----LRTLEVSGNQLTSLP-VLPPGLLELSIFSNPLTHLPALP-------SG 122

Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
           L KL+++ N +  L          L  L +++N L  L          L KL   +N+L 
Sbjct: 123 LCKLWIFGNQLTSLP----VLPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT 174

Query: 323 YLATDSLSLLPNLITLKLAKN 343
            L      L   L  L ++ N
Sbjct: 175 SL----PMLPSGLQELSVSDN 191

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  128 bits (323), Expect = 3e-34
 Identities = 54/267 (20%), Positives = 105/267 (39%), Gaps = 20/267 (7%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
             ++ +  D    L    ++   K+++++           ++T+      + T+     +
Sbjct: 7   TAINVIFPDP--ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQ 60

Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
               L  ++L  N I  L      +L  + EL+LS N L ++     +G+ S+K L L S
Sbjct: 61  YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116

Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
            +I  + P     L  L  L L  N+++ I P       +L +L +    +S L     +
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA 170

Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
            L+ L  L    N I  I     A+L +L ++ L +N I ++     A  +NL  + L N
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 295 NLLRYLDTKAFEPMLHLKKLQLDSNKL 321
             +          ++    ++  S   
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  124 bits (312), Expect = 1e-32
 Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 18/226 (7%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
              +    + +         DL  +  L      +T+I+      + +L  L+L+ N+I 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT 76

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
            L P    +L  +  L L  N L  +        + +  L+L+   I+ +     + L++
Sbjct: 77  DLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSN 130

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
           L+ L+L  N I  I     A L +L+ L + +  + +L     A L+ LT L  ++N + 
Sbjct: 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
             D      + +L ++ L +N++  +    L+   NL  + L    
Sbjct: 187 --DISPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  111 bits (280), Expect = 3e-28
 Identities = 49/260 (18%), Positives = 104/260 (40%), Gaps = 18/260 (6%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           I  +      ++T+       L  L  L+L+ N +++L      +   ++ ++LS N +K
Sbjct: 43  ITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            + +    G   +  + L+   I  +       L +L+ L L  N +T+I     +G+ +
Sbjct: 99  NVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTN 152

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L+ L + + +++ L P    +L  L  L   +N++S I P       +L  + L  N IS
Sbjct: 153 LQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            +     +  ++L  + L    I   P     NL       +   +   +   T +    
Sbjct: 209 DV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISDNGT 264

Query: 287 LTALFLNNNLLRYLDTKAFE 306
             +  L  NL  +++  ++ 
Sbjct: 265 YASPNLTWNLTSFINNVSYT 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  130 bits (329), Expect = 6e-34
 Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 42/297 (14%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
              ++L    LS+L +        L  L    N L+ELP +L  S  +L   + +   + 
Sbjct: 73  AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALS 127

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            LP         L  + +S N +E LP     +   L+ +D+  N L  +         S
Sbjct: 128 DLPPL-------LEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL----PDLPPS 174

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L+ +   +N++ +LP     +L +L  +   NN L  +     +    L  +    N + 
Sbjct: 175 LEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAGNNILE 228

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            L   E   L  L  ++   N ++T+P        SLE L +  N + +L         +
Sbjct: 229 ELP--ELQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQS 278

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           LT L ++ N+   L         +L  L   SN+++ L      L P+L  L ++ N
Sbjct: 279 LTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSL----CDLPPSLEELNVSNN 327

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  121 bits (306), Expect = 9e-31
 Identities = 60/311 (19%), Positives = 108/311 (34%), Gaps = 51/311 (16%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
             I  G NQL  L       L  LT +    N L +LP        +L ++    N+++ 
Sbjct: 176 EFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPDLPL----SLESIVAGNNILEE 229

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
           LP    +    LT +    N +++LP        SLE L++  N LT +         SL
Sbjct: 230 LPE--LQNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP----ELPQSL 279

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
             L +  N  + L     +    L +L+  +N +  +          L  L +S N +  
Sbjct: 280 TFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIE 331

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF------ 281
           L     +    L+ L    N++  +P       Q+L++L +  N ++E            
Sbjct: 332 L----PALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPDIPESVEDLR 383

Query: 282 ---------AGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
                        NL  L +  N LR       +    ++ L+++S ++      +    
Sbjct: 384 MNSHLAEVPELPQNLKQLHVETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETT 439

Query: 333 PNLITLKLAKN 343
             L       +
Sbjct: 440 DKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  118 bits (297), Expect = 1e-29
 Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 44/290 (15%)

Query: 67  GLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-LIKTLPSTFFKGAI-------- 117
               L E     ++L+E+P +      + +    + +   +  P    +           
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVK-SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 118 ----RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173
               +   ++L+   + SLP    H    LE L  S N LT +         SLK L + 
Sbjct: 68  CLDRQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELP----ELPQSLKSLLVD 119

Query: 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
           +N +  L   +   L+YL    + NN+L  + P L N    L  +++  N +  L     
Sbjct: 120 NNNLKAL-SDLPPLLEYLG---VSNNQLEKL-PELQN-SSFLKIIDVDNNSLKKL----P 169

Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
               SL+ +  G N +E +P     NL  L  ++  +N++++L         +L ++   
Sbjct: 170 DLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAG 223

Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           NN+L  L     + +  L  +  D+N L+ L      L P+L  L +  N
Sbjct: 224 NNILEELPE--LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDN 267

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (284), Expect = 8e-28
 Identities = 60/291 (20%), Positives = 102/291 (35%), Gaps = 49/291 (16%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
             I    N L  L          L  +    N L ELP     +   L+T+    NL+KT
Sbjct: 198 TAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT 251

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
           LP         L  + +  N +  LP        SL  LD+S+N+ + +         +L
Sbjct: 252 LPDLPPS----LEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLS----ELPPNL 299

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
             L   SN I  L     D    L+ L++ NN+L  +          L  L  S N ++ 
Sbjct: 300 YYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPALPPR----LERLIASFNHLAE 351

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSF---------------ANLQSLEKLFLYSNN 272
           +         +LK+LH+  N +   P                      Q+L++L + +N 
Sbjct: 352 VP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407

Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
           ++E          ++  L +N+  +      A E    L+    + +   +
Sbjct: 408 LREF----PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 31/175 (17%)

Query: 43  IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
           +P ++  ++   N++ +L          L EL +  N L ELP         L  +  S 
Sbjct: 295 LPPNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIELPALPP----RLERLIASF 346

Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFH---------------DLISLEELD 147
           N +  +P         L  + + YN +   P                       +L++L 
Sbjct: 347 NHLAEVPELPQN----LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 148 LSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
           +  N L            S++ L++ S R+        +    L+     ++   
Sbjct: 403 VETNPLREFP----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  130 bits (329), Expect = 2e-33
 Identities = 48/269 (17%), Positives = 105/269 (39%), Gaps = 18/269 (6%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
             +  +  D      +  +  L+K  +++          ++  +  + + IK++     +
Sbjct: 9   TPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQ 62

Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
               +T + L+ N +  +      +L +L  L L +N +  +   +   +  LK L L+ 
Sbjct: 63  YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH 118

Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
           N I+ +       L  L+ L L NN+++ I     +    L  L L +N IS +     +
Sbjct: 119 NGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDI--VPLA 172

Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
            LT L+ L+L +N+I  + A   A L++L+ L L+S           + L     +   +
Sbjct: 173 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQY 323
             L   +  + +       ++    +   
Sbjct: 231 GSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  121 bits (305), Expect = 2e-30
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 16/207 (7%)

Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
                 + +L +  +T     T + + S+ ++   ++ I  +       L  +  L L  
Sbjct: 19  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 74

Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
           N+L+ I+P      K+L +L L EN I  L+      L  LK L L  N I  I      
Sbjct: 75  NKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING--LV 128

Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
           +L  LE L+L +N I ++     + LT L  L L +N +  +       +  L+ L L  
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSK 184

Query: 319 NKLQYLATDSLSLLPNLITLKLAKNPW 345
           N +  L   +L+ L NL  L+L     
Sbjct: 185 NHISDL--RALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  117 bits (295), Expect = 5e-29
 Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 16/201 (7%)

Query: 143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
           + E       +  I            +  L+   +        ++L  +D +   N+ + 
Sbjct: 1   MGETITVSTPIKQIF--PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 203 FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS 262
            ++     Y  ++T L L+ N ++ +     + L +L  L L +N I+ +   S  +L+ 
Sbjct: 57  SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKK 110

Query: 263 LEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ 322
           L+ L L  N I +++      L  L +L+L NN +   D      +  L  L L+ N++ 
Sbjct: 111 LKSLSLEHNGISDING--LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS 166

Query: 323 YLATDSLSLLPNLITLKLAKN 343
            +    L+ L  L  L L+KN
Sbjct: 167 DI--VPLAGLTKLQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  113 bits (284), Expect = 2e-27
 Identities = 50/266 (18%), Positives = 94/266 (35%), Gaps = 18/266 (6%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
               +L    ++         L  + ++    + +  + G       N++ + L+ N + 
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 78

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +          L  + L  N I+ L +    DL  L+ L L  N ++ I       +  
Sbjct: 79  DIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQ 132

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L+ L L +N+I  +       L  LD LSL +N++S I P        L  L LS+N IS
Sbjct: 133 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            L     + L +L  L L        P    +NL     +     ++        +   +
Sbjct: 189 DL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE--IISDDGD 244

Query: 287 LTALFLNNNLLRYLDTKAFEPMLHLK 312
                +  +L  + +  +F     + 
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVT 270

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score =  119 bits (300), Expect = 5e-32
 Identities = 60/194 (30%), Positives = 84/194 (43%), Gaps = 28/194 (14%)

Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
            S     +P GI     YLD   L  N L  +  G+F+    LT L L  N + SL    
Sbjct: 15  YSQGRTSVPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV 71

Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
           F++LTSL  L+L  N ++++P G F  L  L++L L +N +Q L  G F  LT L  L L
Sbjct: 72  FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131

Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-I 351
             N L+ +    F+    L  LQ                      + L  NPW C C  I
Sbjct: 132 YQNQLKSVPDGVFD---RLTSLQ---------------------YIWLHDNPWDCTCPGI 167

Query: 352 LYMARWLRANRRKV 365
            Y++ W+  +   V
Sbjct: 168 RYLSEWINKHSGVV 181

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score =  110 bits (278), Expect = 7e-29
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 3/152 (1%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
           T V+       S+P  +         LDL  N L S+  G F  + SL +L L  N++  
Sbjct: 10  TTVECYSQGRTSVPTGIPAQT---TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66

Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
           LP G+F+ L  L +L+L  N+L  +  G+F+    L  L L+ N + SL    F +LT L
Sbjct: 67  LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126

Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           K+L L QN ++++P G F  L SL+ ++L+ N
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score =  102 bits (257), Expect = 8e-26
 Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 4/162 (2%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
           C   C C     T+ C+ Q    +P    IP     +DL  N L +L    F  L  LT+
Sbjct: 1   CPSRCSCSGT--TVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQ 56

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
           L L  N L  LP  +F    +L+ ++LS N +++LP+  F    +L  + L+ N ++SLP
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
             VF  L  L++L L QN L S+  G F  + SL+ + L  N
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  117 bits (295), Expect = 2e-31
 Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 28/181 (15%)

Query: 216 TFLELSENWISSLNGD-EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ 274
           T L L++N +  ++ D  F +L  L +L L +N +  I   +F     +++L L  N I+
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN 334
           E+    F GL  L  L L +N +  +   +FE   HL  L                    
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFE---HLNSLT------------------- 129

Query: 335 LITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CE 393
             +L LA NP++C+C + + A WLR            C  P  +    ++D+   +  C 
Sbjct: 130 --SLNLASNPFNCNCHLAWFAEWLRKKSLNG--GAARCGAPSKVRDVQIKDLPHSEFKCS 185

Query: 394 G 394
            
Sbjct: 186 S 186

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  100 bits (252), Expect = 2e-25
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 168 KRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
             L L  N + ++   G+F  L +L  L L+ N+L+ I P  F    H+  L+L EN I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
            ++   F  L  LK L+L  N I  +  GSF +L SL  L L SN
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 90.8 bits (226), Expect = 1e-21
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 120 TVVQLSYNAIESLPAN-VFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
           T + L+ N +  + ++ +F  L  L +L+L +N LT I+   F G   ++ L+L  N+I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
           ++   +F  L  L  L+L +N++S + PG F +   LT L L+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 87.7 bits (218), Expect = 1e-20
 Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%)

Query: 81  LSELPGKLFISTINLSTMDLSQNLIKTLPST-FFKGAIRLTVVQLSYNAIESLPANVFHD 139
           L E+P  + + T  L    L+ N +  + S   F     L  ++L  N +  +  N F  
Sbjct: 20  LKEIPRDIPLHTTEL---LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76

Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
              ++EL L +N +  I    F G++ LK L L  N+I+ + PG F+ L  L  L+L +N
Sbjct: 77  ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 80.4 bits (199), Expect = 6e-18
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 29/163 (17%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDA-FTGLYKLT 72
           C   C C     T+ C  + ++E+P D  IP+    + L  N+L  +S D  F  L  L 
Sbjct: 2   CPAMCHCEGT--TVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLV 57

Query: 73  ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
           +L+L++N L+ +    F    ++  + L +N                   ++       +
Sbjct: 58  KLELKRNQLTGIEPNAFEGASHIQELQLGEN-------------------KIK-----EI 93

Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
              +F  L  L+ L+L  N ++ +  G+F  + SL  L L SN
Sbjct: 94  SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score =  117 bits (295), Expect = 2e-31
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 27/168 (16%)

Query: 216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
           T L L  N  + +   E S    L  + L  N I T+   SF+N+  L  L L  N ++ 
Sbjct: 34  TELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 276 LHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
           +   TF GL +L  L L+ N +  +   AF     L  L                     
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFN---DLSALS-------------------- 129

Query: 336 ITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV 383
             L +  NP +CDC + +++ W+++  ++       C GPG +  K +
Sbjct: 130 -HLAIGANPLYCDCNMQWLSDWVKSEYKEP--GIARCAGPGEMADKLL 174

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 93.9 bits (234), Expect = 9e-23
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
             L L  N+   L P    + K+L  + L NNR+S +    F+    L  L LS N +  
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           +    F  L SL+ L L  N I  +P G+F +L +L  L + +N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 88.1 bits (219), Expect = 1e-20
 Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 80  HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHD 139
            L  LP  +      L    L  N    +P         LT++ LS N I +L    F +
Sbjct: 21  GLKVLPKGIPRDVTEL---YLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
           +  L  L LS N L  I   TF G+ SL+ L L  N I+ +P G F+DL  L  L++  N
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  119 bits (300), Expect = 4e-31
 Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 16/225 (7%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
                L   ++        ++L S++++  + + + S+Q      + ++ +L L  N++ 
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT 81

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
            + P    +LK L +L L  N++  +        K L  L L  N IS +NG     L  
Sbjct: 82  DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQ 135

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
           L+ L+LG N I  I     + L  L+ L L  N I ++     AGLT L  L+L+ N + 
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191

Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
             D +A   + +L  L+L S +      +  S L    T+K    
Sbjct: 192 --DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  119 bits (299), Expect = 6e-31
 Identities = 49/268 (18%), Positives = 106/268 (39%), Gaps = 21/268 (7%)

Query: 54  INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFF 113
           I Q+ +          +  +  L+K  +++          ++  +  + + IK++     
Sbjct: 14  IKQIFSDD-----AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGI 64

Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173
           +    +T + L+ N +  +      +L +L  L L +N +  +   +   +  LK L L+
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE 120

Query: 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
            N I+ +       L  L+ L L NN+++ I     +    L  L L +N IS +     
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--L 174

Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
           + LT L+ L+L +N+I  + A   A L++L+ L L+S           + L     +   
Sbjct: 175 AGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
           +  L   +  + +       ++    + 
Sbjct: 233 DGSLVTPEIISDDGDYEKPNVKWHLPEF 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  116 bits (293), Expect = 4e-30
 Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 16/205 (7%)

Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
                + +L +  +T     T + + S+ ++   ++ I  +       L  +  L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 200 RLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFAN 259
           +L+ I+P      K+L +L L EN +  L+      L  LK L L  N I  I      +
Sbjct: 79  KLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVH 132

Query: 260 LQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSN 319
           L  LE L+L +N I ++     + LT L  L L +N +  +       +  L+ L L  N
Sbjct: 133 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKN 188

Query: 320 KLQYLATDSLSLLPNLITLKLAKNP 344
            +  L   +L+ L NL  L+L    
Sbjct: 189 HISDL--RALAGLKNLDVLELFSQE 211

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  107 bits (270), Expect = 7e-27
 Identities = 49/260 (18%), Positives = 93/260 (35%), Gaps = 18/260 (6%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
               +L    ++         L  + ++    + +  + G       N++ + L+ N + 
Sbjct: 26  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            +          L  + L  N ++ L +    DL  L+ L L  N ++ I       +  
Sbjct: 82  DIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQ 135

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS 226
           L+ L L +N+I  +       L  LD LSL +N++S I P        L  L LS+N IS
Sbjct: 136 LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191

Query: 227 SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTN 286
            L     + L +L  L L        P    +NL     +     ++        +   +
Sbjct: 192 DL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE--IISDDGD 247

Query: 287 LTALFLNNNLLRYLDTKAFE 306
                +  +L  + +  +F 
Sbjct: 248 YEKPNVKWHLPEFTNEVSFI 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  + LG N+++ ++    + L KL  L L  N +S++          L  + LS+N I 
Sbjct: 136 LESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
            L +    G   L V++L      + P N   +L+    +  +   L + +  +  G Y 
Sbjct: 192 DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYE 249

Query: 167 LKRLKLQSNRINQLPPGIFD 186
              +K            IF 
Sbjct: 250 KPNVKWHLPEFTNEVSFIFY 269

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score =  115 bits (290), Expect = 3e-30
 Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 29/194 (14%)

Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
           +S R   +P GI  + + L    L +N+++ + PG+F+   +L  L L  N + +L    
Sbjct: 27  RSKRHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83

Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
           F  LT L  L LG N +  +P+  F  L  L++LF+  N + EL  G    LT+LT L L
Sbjct: 84  FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLAL 142

Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-I 351
           + N L+ +   AF+    L  L                         L  NPW C+C  I
Sbjct: 143 DQNQLKSIPHGAFD---RLSSLT---------------------HAYLFGNPWDCECRDI 178

Query: 352 LYMARWLRANRRKV 365
           +Y+  W+  +    
Sbjct: 179 MYLRNWVADHTSIA 192

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score =  105 bits (263), Expect = 2e-26
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 25/152 (16%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
            ++ L  N I  L   VF  LI+L+EL L  N L ++  G F  +  L  L L +N++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSL 239
           LP  +FD L +L  L +  N+L+ +  G                           +LT L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-------------------------IERLTHL 137

Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
             L L QN +++IP G+F  L SL   +L+ N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 97.5 bits (243), Expect = 1e-23
 Identities = 54/186 (29%), Positives = 75/186 (40%), Gaps = 29/186 (15%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
           C   C C     T+ C  +    +P    IP + +++ L  NQ++ L    F  L  L E
Sbjct: 13  CPSQCSCSGT--TVDCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKE 68

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
           L L  N L  LP  +F S   L+ +DL  N                   QL       LP
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTN-------------------QL-----TVLP 104

Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
           + VF  L+ L+EL +  N LT +  G    +  L  L L  N++  +P G FD L  L  
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 194 LSLRNN 199
             L  N
Sbjct: 164 AYLFGN 169

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (304), Expect = 9e-30
 Identities = 79/308 (25%), Positives = 118/308 (38%), Gaps = 21/308 (6%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQNLIK 106
           + +D+  N+LS     A +   +L  L +  N     +P        +L  + L++N   
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKFT 282

Query: 107 -TLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQNVLT-SIQYGTFSG 163
             +P         LT + LS N    ++P         LE L LS N  +  +   T   
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLK 341

Query: 164 MYSLKRLKLQSNRIN-QLPPGIFDDLKYLDFLSLRNNRLS-FIRPGLFN-YFKHLTFLEL 220
           M  LK L L  N  + +LP  + +    L  L L +N  S  I P L       L  L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 221 SENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQELHAG 279
             N  +       S  + L  LHL  NY+  TIP+ S  +L  L  L L+ N ++    G
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLE----G 456

Query: 280 T----FAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
                   +  L  L L+ N L            +L  + L +N+L       +  L NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 336 ITLKLAKN 343
             LKL+ N
Sbjct: 517 AILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (296), Expect = 9e-29
 Identities = 74/311 (23%), Positives = 115/311 (36%), Gaps = 26/311 (8%)

Query: 48  RVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIST--INLSTMDLSQN 103
           + +++  N L           L  L  L L  N +S        +S     L  + +S N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 104 LIK-TLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQNVLTSIQYGTF 161
            I   +  +       L  + +S N     +P     D  +L+ LD+S N L+       
Sbjct: 189 KISGDVDVSRCV---NLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI 243

Query: 162 SGMYSLKRLKLQSNRIN-QLPPGIFDDLKYLDFLSLRNNRLS-FIRPGLFNYFKHLTFLE 219
           S    LK L + SN+    +PP     L+YL    L  N+ +  I   L      LT L+
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLS---LAENKFTGEIPDFLSGACDTLTGLD 300

Query: 220 LSENWISSLNG---DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQ- 274
           LS N      G     F   + L+ L L  N     +P  +   ++ L+ L L  N    
Sbjct: 301 LSGN---HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 275 ELHAGTFAGLTNLTALFLNNNLL--RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
           EL         +L  L L++N      L      P   L++L L +N        +LS  
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 333 PNLITLKLAKN 343
             L++L L+ N
Sbjct: 418 SELVSLHLSFN 428

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 3e-21
 Identities = 61/270 (22%), Positives = 102/270 (37%), Gaps = 33/270 (12%)

Query: 90  ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDL 148
           +++I+LS+  L+      + S+       L  + LS + I  S+    F    SL  LDL
Sbjct: 52  VTSIDLSSKPLNVGFS-AVSSSLLS-LTGLESLFLSNSHINGSVSG--FKCSASLTSLDL 107

Query: 149 SQNVLTSI--QYGTFSGMYSLKRLKLQSNRIN-QLPPGIFDDLKYLDFLSLRNNRLSFIR 205
           S+N L+       +      LK L + SN ++          L  L+ L L  N +S   
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 206 P---GLFNYFKHLTFLELSENWISSLNGD-EFSQLTSLKELHLGQNYIE-TIPAGSFANL 260
                L +    L  L +S N    ++GD + S+  +L+ L +  N     IP     + 
Sbjct: 168 VVGWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSSNNFSTGIP--FLGDC 222

Query: 261 QSLEKLFLYSNNIQELHAGT----FAGLTNLTALFLNNNLLRYLDTKAF--EPMLHLKKL 314
            +L+ L +  N +     G      +  T L  L +++N             P+  L+ L
Sbjct: 223 SALQHLDISGNKLS----GDFSRAISTCTELKLLNISSNQF----VGPIPPLPLKSLQYL 274

Query: 315 QLDSNKLQ-YLATDSLSLLPNLITLKLAKN 343
            L  NK    +          L  L L+ N
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 3e-18
 Identities = 64/285 (22%), Positives = 97/285 (34%), Gaps = 46/285 (16%)

Query: 47  IRVIDLGINQLS--------TLSK----------------DAFTGLYKLTELKLRKNHLS 82
           +  + L  N LS        +LSK                     +  L  L L  N L+
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 83  -ELPGKLFISTINLSTMDLSQNLIK-TLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHD 139
            E+P  L   T NL+ + LS N +   +P    +    L +++LS N+   ++PA    D
Sbjct: 480 GEIPSGLSNCT-NLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPAE-LGD 536

Query: 140 LISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
             SL  LDL+ N+      GT       +  K+ +N I         +           N
Sbjct: 537 CRSLIWLDLNTNLFN----GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 200 RLSF--IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGS 256
            L F  IR    N         ++           F    S+  L +  N +   IP   
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-E 651

Query: 257 FANLQSLEKLFLYSNNIQELHAG----TFAGLTNLTALFLNNNLL 297
             ++  L  L L  N+I     G        L  L  L L++N L
Sbjct: 652 IGSMPYLFILNLGHNDIS----GSIPDEVGDLRGLNILDLSSNKL 692

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 7e-15
 Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 16/234 (6%)

Query: 48  RVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTINLSTMDLSQNLI 105
             I L  N+L+  + K     L  L  LKL  N  S  +P +L     +L  +DL+ NL 
Sbjct: 493 NWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLF 550

Query: 106 K-TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
             T+P+  FK + ++    ++      +  +             +      I+    + +
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG---AGNLLEFQGIRSEQLNRL 607

Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
            +     + S          FD+   + FL +  N LS   P       +L  L L  N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN- 666

Query: 225 ISSLNG---DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQ 274
              ++G   DE   L  L  L L  N ++  IP  + + L  L ++ L +NN+ 
Sbjct: 667 --DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 9e-08
 Identities = 26/140 (18%), Positives = 51/140 (36%), Gaps = 12/140 (8%)

Query: 214 HLTFLELSENWISSLNG---DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLY 269
            +T ++LS   ++            LT L+ L L  ++I  ++    F    SL  L L 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLS 108

Query: 270 SNNIQEL--HAGTFAGLTNLTALFLNNNLLRY-LDTKAFEPMLHLKKLQLDSNKLQ---Y 323
            N++        +    + L  L +++N L +         +  L+ L L +N +     
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 324 LATDSLSLLPNLITLKLAKN 343
           +          L  L ++ N
Sbjct: 169 VGWVLSDGCGELKHLAISGN 188

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  119 bits (299), Expect = 1e-29
 Identities = 55/269 (20%), Positives = 103/269 (38%), Gaps = 31/269 (11%)

Query: 54  INQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFF 113
            N+  +L K+    + + +EL+L + +LS LP  L      ++ ++++QN + +LP    
Sbjct: 46  RNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPELPA 100

Query: 114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ 173
                L  +    N + +LP        SL+ LD+  N LT +          L+ +   
Sbjct: 101 S----LEYLDACDNRLSTLPE----LPASLKHLDVDNNQLTMLP----ELPALLEYINAD 148

Query: 174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF 233
           +N++  LP    +    L+ LS+RNN+L+F+     +    L  L++S N + SL     
Sbjct: 149 NNQLTMLP----ELPTSLEVLSVRNNQLTFLPELPES----LEALDVSTNLLESL-PAVP 199

Query: 234 SQLTSLKE----LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA 289
            +    +E        +N I  IP  +  +L     + L  N +      + +  T    
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 290 LFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
                      D +       L       
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (264), Expect = 7e-25
 Identities = 50/306 (16%), Positives = 97/306 (31%), Gaps = 30/306 (9%)

Query: 41  QIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL 100
           + +      + L    LS+L  +      ++T L++ +N L  LP        +L  +D 
Sbjct: 55  ECLINQFSELQLNRLNLSSLPDNLPP---QITVLEITQNALISLPELPA----SLEYLDA 107

Query: 101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
             N + TLP         L  + +  N +  LP         LE ++   N LT +    
Sbjct: 108 CDNRLSTLPELP----ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLP--- 156

Query: 161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF---KHLTF 217
                SL+ L +++N++  LP    + L+ LD   +  N L  +           +   F
Sbjct: 157 -ELPTSLEVLSVRNNQLTFLPELP-ESLEALD---VSTNLLESLPAVPVRNHHSEETEIF 211

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
               EN I+ +  +    L     + L  N + +    S +   +      +   I    
Sbjct: 212 FRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD--YHGPRIYFSM 268

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
           +       +                     + H  + +  +N       D LS   +   
Sbjct: 269 SDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF-LDRLSDTVSARN 327

Query: 338 LKLAKN 343
               + 
Sbjct: 328 TSGFRE 333

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  102 bits (256), Expect = 7e-24
 Identities = 44/246 (17%), Positives = 87/246 (35%), Gaps = 46/246 (18%)

Query: 124 LSYNAIESLPANVFHDLISLEELDLS----QNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
             YN I    A+ F      E+  L        ++ ++    +       L+L    ++ 
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLNLSS 73

Query: 180 LPPGIFDDLKYLD-----------------FLSLRNNRLSFIRPGLFNYFKHLTFLELSE 222
           LP  +   +  L+                 +L   +NRLS +     +    L  L++  
Sbjct: 74  LPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPAS----LKHLDVDN 129

Query: 223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA 282
           N ++ L          L+ ++   N +  +P        SLE L + +N +  L      
Sbjct: 130 NQLTMLP----ELPALLEYINADNNQLTMLP----ELPTSLEVLSVRNNQLTFL----PE 177

Query: 283 GLTNLTALFLNNNLLRYLDTKAFEPMLHLKK----LQLDSNKLQYLATDSLSLLPNLITL 338
              +L AL ++ NLL  L         H ++     +   N++ ++  +++  L    T+
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVR-NHHSEETEIFFRCRENRITHI-PENILSLDPTCTI 235

Query: 339 KLAKNP 344
            L  NP
Sbjct: 236 ILEDNP 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 91.2 bits (226), Expect = 4e-20
 Identities = 45/213 (21%), Positives = 77/213 (36%), Gaps = 28/213 (13%)

Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD-DLKY 190
           LP N    L      +   N ++      FS     ++  L     N+    + +  +  
Sbjct: 5   LPINNNFSLSQ----NSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE 250
              L L    LS +   L      +T LE+++N + SL         SL+ L    N + 
Sbjct: 61  FSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLS 113

Query: 251 TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLH 310
           T+P        SL+ L + +N +  L          L  +  +NN L  L          
Sbjct: 114 TLP----ELPASLKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPEL----PTS 161

Query: 311 LKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           L+ L + +N+L +L      L  +L  L ++ N
Sbjct: 162 LEVLSVRNNQLTFLP----ELPESLEALDVSTN 190

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  115 bits (291), Expect = 2e-29
 Identities = 50/282 (17%), Positives = 92/282 (32%), Gaps = 21/282 (7%)

Query: 65  FTGLYKLTELKLRKNHLSELPGKLFIST-INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQ 123
                           L      L  +T      ++L    +   P   F+    L  + 
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMT 110

Query: 124 LSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS-NRINQLPP 182
           +    +  LP  +      LE L L++N L ++   + + +  L+ L +++   + +LP 
Sbjct: 111 IDAAGLMELPDTMQQ-FAGLETLTLARNPLRALP-ASIASLNRLRELSIRACPELTELPE 168

Query: 183 GI--------FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
            +           L  L  L L    +  + P      ++L  L++  + +S+L      
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALG-PAIH 226

Query: 235 QLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYS-NNIQELHAGTFAGLTNLTALFL 292
            L  L+EL L G   +   P   F     L++L L   +N+  L       LT L  L L
Sbjct: 227 HLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDL 284

Query: 293 -NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP 333
                L  L       +     + +  +    L        P
Sbjct: 285 RGCVNLSRL-PSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (259), Expect = 4e-25
 Identities = 62/270 (22%), Positives = 99/270 (36%), Gaps = 52/270 (19%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP---GKLFISTINLSTMDLSQNL 104
             ++L    L     D    L  L  + +    L ELP    +       L T+ L++N 
Sbjct: 84  VALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPDTMQQF----AGLETLTLARNP 138

Query: 105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS-QNVLTSI------- 156
           ++ LP++                            L  L EL +     LT +       
Sbjct: 139 LRALPASIAS-------------------------LNRLRELSIRACPELTELPEPLAST 173

Query: 157 -QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHL 215
              G   G+ +L+ L+L+   I  LP  I  +L+ L  L +RN+ LS + P + +    L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHH-LPKL 231

Query: 216 TFLELSENWISSLNG--DEFSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYSN- 271
             L+L     ++L      F     LK L L   + + T+P      L  LEKL L    
Sbjct: 232 EELDLRGC--TALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCV 288

Query: 272 NIQELHAGTFAGLTNLTALFLNNNLLRYLD 301
           N+  L +   A L     + +  +L   LD
Sbjct: 289 NLSRLPS-LIAQLPANCIILVPPHLQAQLD 317

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 3e-21
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 20/217 (9%)

Query: 138 HDLISLEELDLS-QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSL 196
           H     E L       L          +   +R                 +       + 
Sbjct: 9   HHSSGRENLYFQGSTALRPY----HDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETR 63

Query: 197 RNNRLSFIRPGLFN-YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG 255
               L      L +        LEL    +     D+  +L+ L+ + +    +  +P  
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPD- 121

Query: 256 SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL-NNNLLRYL--------DTKAFE 306
           +      LE L L  N ++ L A + A L  L  L +     L  L         +   +
Sbjct: 122 TMQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 307 PMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
            +++L+ L+L+   ++ L   S++ L NL +LK+  +
Sbjct: 181 GLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNS 216

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 5e-21
 Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 26/230 (11%)

Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP--PGI 184
            A+     +V          D ++      Q        +    ++++     L     +
Sbjct: 23  TALRPYH-DVLSQWQRHYNADRNRWHSAWRQA-------NSNNPQIETRTGRALKATADL 74

Query: 185 FDDLKY--LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL 242
            +D        L LR+  L       F    HL  + +    +  L  D   Q   L+ L
Sbjct: 75  LEDATQPGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELP-DTMQQFAGLETL 132

Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSNN-IQEL--------HAGTFAGLTNLTALFLN 293
            L +N +  +PA S A+L  L +L + +   + EL         +G   GL NL +L L 
Sbjct: 133 TLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
              +R L   +   + +LK L++ ++ L  L   ++  LP L  L L   
Sbjct: 192 WTGIRSLP-ASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 14/141 (9%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP---GKLFISTINLSTMDLSQ-N 103
           + + L    + +L       L  L  LK+R + LS L      L      L  +DL    
Sbjct: 186 QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPAIHHL----PKLEELDLRGCT 240

Query: 104 LIKTLPSTFFKGAIRLTVVQLS-YNAIESLPANVFHDLISLEELDLSQNV-LTSIQYGTF 161
            ++  P  F      L  + L   + + +LP +  H L  LE+LDL   V L+ +     
Sbjct: 241 ALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS-LI 297

Query: 162 SGMYSLKRLKLQSNRINQLPP 182
           + + +   + +  +   QL  
Sbjct: 298 AQLPANCIILVPPHLQAQLDQ 318

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score =  103 bits (258), Expect = 3e-26
 Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
           +S   L L  N ++++P G F  L  L KL L  N IQ L  G F  LT LT L+L+ N 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
           L+ L    F+ +  LK+L LD+N+L+ +       L +L  + L  NPW C C  I Y++
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147

Query: 356 RWLRANRRKVWDSKPTCRGPG 376
           RWL  N +K   S   C G G
Sbjct: 148 RWLNKNSQKEQGS-AKCSGSG 167

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 95.8 bits (239), Expect = 1e-23
 Identities = 44/104 (42%), Positives = 65/104 (62%)

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
            RL+L+SN++  LP G+FD L  L  LSL  N++  +  G+F+    LT L L EN + S
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
           L    F +LT LKEL L  N ++++P G F  L SL+K++L++N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 88.1 bits (219), Expect = 9e-21
 Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
           T ++L  N ++SLP  VF  L  L +L LSQN + S+  G F  +  L  L L  N++  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-W 224
           LP G+FD L  L  L+L  N+L  +  G+F+    L  + L  N W
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 83.1 bits (206), Expect = 5e-19
 Identities = 39/101 (38%), Positives = 54/101 (53%)

Query: 99  DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQY 158
           +L  N +++LP   F    +LT + LS N I+SLP  VF  L  L  L L +N L S+  
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93

Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
           G F  +  LK L L +N++  +P GIFD L  L  + L  N
Sbjct: 94  GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 24/133 (18%)

Query: 43  IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ 102
           IP     ++L  N+L +L    F  L +LT+L L +N +  LP  +F     L+ + L +
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFS 162
           N                   +L      SLP  VF  L  L+EL L  N L S+  G F 
Sbjct: 86  N-------------------KLQ-----SLPNGVFDKLTQLKELALDTNQLKSVPDGIFD 121

Query: 163 GMYSLKRLKLQSN 175
            + SL+++ L +N
Sbjct: 122 RLTSLQKIWLHTN 134

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  105 bits (263), Expect = 1e-25
 Identities = 29/142 (20%), Positives = 51/142 (35%), Gaps = 26/142 (18%)

Query: 233 FSQLTSLKELHL-GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
                +L EL++  Q +++ +       L  L  L +  + ++ +    F     L+ L 
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 292 LNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI 351
           L+ N L  L  K  + +                         +L  L L+ NP HC CA+
Sbjct: 87  LSFNALESLSWKTVQGL-------------------------SLQELVLSGNPLHCSCAL 121

Query: 352 LYMARWLRANRRKVWDSKPTCR 373
            ++ RW       V + K  C 
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCH 143

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 80.9 bits (199), Expect = 4e-17
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 127 NAIESLPANVFHDLISLEELDLS-QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF 185
            A++SL         +L EL +  Q  L  ++     G+  L+ L +  + +  + P  F
Sbjct: 19  GALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
                L  L+L  N L  +          L  L LS N
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 79.4 bits (195), Expect = 1e-16
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 4/103 (3%)

Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYN-AIESLPANVFHDLISLEELDLSQNVLTSIQY 158
                + +L      GA  LT + +     ++ L       L  L  L + ++ L  +  
Sbjct: 16  TRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 159 GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
             F     L RL L  N +  L       L  L  L L  N L
Sbjct: 74  DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 74.0 bits (181), Expect = 7e-15
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 160 TFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFL 218
              G  +L  L +++ + +  L       L  L  L++  + L F+ P  F++   L+ L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 219 ELSENWISSLNGDEFSQLTSLKELHLGQN 247
            LS N + SL+      L SL+EL L  N
Sbjct: 86  NLSFNALESLSWKTVQGL-SLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 1e-11
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 63  DAFTGLYKLTELKLRKN-HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTV 121
               G   LTEL +    HL  L  +       L  + + ++ ++ +    F    RL+ 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
           + LS+NA+ESL       L SL+EL LS N L 
Sbjct: 85  LNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 99.7 bits (249), Expect = 3e-24
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 18/206 (8%)

Query: 139 DLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRN 198
            L +  + +L +  +T +   +   +  ++     ++ I  L          L  L L +
Sbjct: 17  GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSH 72

Query: 199 NRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA 258
           N++S + P        L  L ++ N + +LNG        L  L L  N +      S  
Sbjct: 73  NQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP---SACLSRLFLDNNELRDTD--SLI 125

Query: 259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
           +L++LE L + +N ++ +       L+ L  L L+ N +          +  LKK+    
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-----GGLTRLKKVNWID 178

Query: 319 NKLQYLATDSLSLLPNLITLKLAKNP 344
              Q    + +   P L      K+P
Sbjct: 179 LTGQKCVNEPVKYQPELYITNTVKDP 204

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 98.9 bits (247), Expect = 6e-24
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 17/222 (7%)

Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYG 159
                I  +      G        L   ++  L +    +L  ++  +   + + S+   
Sbjct: 4   QRPTPINQV--FPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-- 57

Query: 160 TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLE 219
                 +LK L L  N+I+ L P    DL  L+ LS+  NRL  +          L+ L 
Sbjct: 58  GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLF 112

Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG 279
           L  N +   +      L +L+ L +  N +++I       L  LE L L+ N I      
Sbjct: 113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG- 167

Query: 280 TFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
               L  +  + L          K    +     ++    + 
Sbjct: 168 -LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 98.9 bits (247), Expect = 7e-24
 Identities = 41/200 (20%), Positives = 78/200 (39%), Gaps = 17/200 (8%)

Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           E       +  +      G+ +  +  L    +  L      +L  +   +  N+ +  +
Sbjct: 1   ESIQRPTPINQVF--PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL 56

Query: 205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE 264
                 +F +L  L LS N IS L+      LT L+EL + +N ++ +     A    L 
Sbjct: 57  AG--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC---LS 109

Query: 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYL 324
           +LFL +N +++  +     L NL  L + NN L+ +       +  L+ L L  N++   
Sbjct: 110 RLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165

Query: 325 ATDSLSLLPNLITLKLAKNP 344
               L+ L  +  + L    
Sbjct: 166 --GGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 96.6 bits (241), Expect = 5e-23
 Identities = 49/252 (19%), Positives = 91/252 (36%), Gaps = 19/252 (7%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
             ++ +  D   GL    +  L K  +++L          +   +   + I++L     +
Sbjct: 7   TPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQ 60

Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
               L  + LS+N I  L      DL  LEEL +++N L ++     +    L RL L +
Sbjct: 61  FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDN 115

Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
           N +          LK L+ LS+RNN+L  I      +   L  L+L  N I++      +
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT--GGLT 169

Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
           +L  +  + L        P      L     +          +    +   +     +  
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY--YISNGGSYVDGCVLW 227

Query: 295 NLLRYLDTKAFE 306
            L  Y D  +++
Sbjct: 228 ELPVYTDEVSYK 239

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 11/157 (7%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
             + +  N+L  L+         L+ L L  N L +      I   NL  + +  N +K+
Sbjct: 88  EELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKS 142

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL 167
           +         +L V+ L  N I +        L  +  +DL+     +        +Y  
Sbjct: 143 IVM--LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
             +K    R   + P    +        +      + 
Sbjct: 199 NTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPVYT 233

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 97.7 bits (244), Expect = 3e-24
 Identities = 25/180 (13%), Positives = 62/180 (34%), Gaps = 9/180 (5%)

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
           + K         +         +  L +++L N  ++ +      Y  ++  L ++    
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA 78

Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
           ++ N    S L++L+ L +    + +    + + L SL  L +  +   +        L 
Sbjct: 79  TNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 286 NLTALFLN-NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP 344
            + ++ L+ N  +   D    + +  LK L +  + +       +   P L  L      
Sbjct: 137 KVNSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.7 bits (218), Expect = 2e-20
 Identities = 29/189 (15%), Positives = 66/189 (34%), Gaps = 14/189 (7%)

Query: 66  TGLYKLTELKLRKNHLSEL-PGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
           +         L ++  + +   ++     +L+ + L+   +  L  T  + A  +  + +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQM----NSLTYITLANINVTDL--TGIEYAHNIKDLTI 73

Query: 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI 184
           +     +   N    L +LE L +    +TS +    SG+ SL  L +  +  +      
Sbjct: 74  NNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 185 FDDLKYLDFLSL-RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH 243
            + L  ++ + L  N  ++ I P        L  L +  + +    G        L +L+
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLY 187

Query: 244 LGQNYIETI 252
                I   
Sbjct: 188 AFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 26/157 (16%), Positives = 58/157 (36%), Gaps = 9/157 (5%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
           +  I L    ++ L+       + + +L +   H +           NL  + +    + 
Sbjct: 46  LTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN-VLTSIQYGTFSGMY 165
           +       G   LT++ +S++A +       + L  +  +DLS N  +T I       + 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLP 159

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS 202
            LK L +Q + ++       +D   L+ L   +  + 
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
           S   +     LGQ+    I   + A + SL  + L + N+ +L         N+  L +N
Sbjct: 20  STFKAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTIN 74

Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
           N      +      + +L++L++    +      +LS L +L  L ++ +
Sbjct: 75  NIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 5/111 (4%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-LIK 106
             + +    +++      +GL  LT L +  +   +       +   ++++DLS N  I 
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 107 TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
            +     K    L  + + ++ +         D   L +L      +   +
Sbjct: 151 DIMP--LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 97.7 bits (243), Expect = 5e-23
 Identities = 47/254 (18%), Positives = 75/254 (29%), Gaps = 29/254 (11%)

Query: 51  DLGINQLSTLSKDAFTGLYKLTELKLRKNHLS--ELPGKLFISTINLSTMDLSQNLIKT- 107
              I            G+  L EL L    ++    P  L  +  +L+ ++L      T 
Sbjct: 77  AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136

Query: 108 ---LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM 164
              L          L V+ ++     +          +L  LDLS N             
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------- 187

Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW 224
                   +   I+ L P  F  L+ L   +      S +   L      L  L+LS N 
Sbjct: 188 --------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 225 ISSLNGDE-FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG 283
           +    G       + L  L+L    ++ +P G       L  L L  N +    +     
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS--PDE 294

Query: 284 LTNLTALFLNNNLL 297
           L  +  L L  N  
Sbjct: 295 LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 90.3 bits (224), Expect = 2e-20
 Identities = 41/268 (15%), Positives = 75/268 (27%), Gaps = 21/268 (7%)

Query: 68  LYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
           L K  + +      +++   L +  + +    +   ++         G   L  + L   
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR--VLGISGLQELTLENL 105

Query: 128 AI--ESLPANVFHDLISLEELDLSQNVLTSIQYGTFS----GMYSLKRLKLQSNRINQLP 181
            +   + P  +      L  L+L      +               LK L +         
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 182 PGIFDDLKYLDFLSLRNNRLS----FIRPGLFNYFKHLTFLELSENWISSLNGDE---FS 234
                    L  L L +N        I       F  L  L L    + + +G      +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 235 QLTSLKELHLGQNYIETIP-AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN 293
               L+ L L  N +     A S      L  L L    ++++  G       L+ L L+
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLS 282

Query: 294 NNLLRYLDTKAFEPMLHLKKLQLDSNKL 321
            N L    +     +  +  L L  N  
Sbjct: 283 YNRLDRNPSPDE--LPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 5e-14
 Identities = 42/222 (18%), Positives = 73/222 (32%), Gaps = 20/222 (9%)

Query: 139 DLISLEELDLSQNVLTSIQYGTFS---GMYSLKRLKLQSNRI--NQLPPGIFDDLKYLDF 193
             +SL+ L +    + S          G+  L+ L L++  +     PP +      L+ 
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 194 LSLRNNRLSFIRPGLFNYF----KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI 249
           L+LRN   +     L          L  L +++    + + ++     +L  L L  N  
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 250 -------ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL-D 301
                    +    F  LQ L            + +   A    L  L L++N LR    
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN 343
             + +    L  L L    L+ +      L   L  L L+ N
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQV---PKGLPAKLSVLDLSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.7 bits (173), Expect = 8e-14
 Identities = 35/179 (19%), Positives = 52/179 (29%), Gaps = 23/179 (12%)

Query: 46  DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLI 105
            ++V+ +        S +       L+ L L  N      G                 LI
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-----------------LI 192

Query: 106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-QYGTFSGM 164
             L    F     L +          + + +    + L+ LDLS N L       +    
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
             L  L L    + Q+P G+   L  LD   L  NRL             +  L L  N
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDRNPSPDE--LPQVGNLSLKGN 306

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 51  DLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL-FISTINLSTMDLSQNLIKTLP 109
           + G+   S +         +L  L L  N L +  G         L++++LS   +K +P
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP 269

Query: 110 STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
                   +L+V+ LSYN ++  P+    +L  +  L L  N     +
Sbjct: 270 KGLPA---KLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 41/256 (16%), Positives = 67/256 (26%), Gaps = 60/256 (23%)

Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSI-QYGTFSGMYSLKRLKLQSNRINQLPPGIF 185
           N + +    ++    SLE L    +    + Q+       SLKRL +++ RI      +F
Sbjct: 29  NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPS--RILF 86

Query: 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL--------- 236
             L+ L    L+                    L L    ++        +          
Sbjct: 87  GALRVLGISGLQE-------------------LTLENLEVTGTAPPPLLEATGPDLNILN 127

Query: 237 ---------------------TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE 275
                                  LK L + Q +             +L  L L  N    
Sbjct: 128 LRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 276 ----LHAGTFAGLTNLTALFLNNNLLRYLDTKA---FEPMLHLKKLQLDSNKLQYL-ATD 327
               + A        L  L L N  +              + L+ L L  N L+      
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247

Query: 328 SLSLLPNLITLKLAKN 343
           S      L +L L+  
Sbjct: 248 SCDWPSQLNSLNLSFT 263

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 25/83 (30%), Positives = 35/83 (42%)

Query: 310 HLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSK 369
              +L L  N L  L    L  LP L T  L  NPW CDC ++ +  WL     +     
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPYRD 91

Query: 370 PTCRGPGNLGGKSVEDMSFDDLC 392
             C  P  L G+ +  ++ D+L 
Sbjct: 92  LRCVAPPALRGRLLPYLAEDELR 114

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
          C  PC C      + C ++ +         PVD   + L  N L+ L       L  L  
Sbjct: 2  CPAPCSCAG--TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRT 59

Query: 74 LKLRKNHL 81
            L  N  
Sbjct: 60 AHLGANPW 67

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
           SLP       +   EL L+ N LT++  G    + +L+   L +N     P      L  
Sbjct: 24  SLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN-----PWRCDCRLVP 75

Query: 191 L 191
           L
Sbjct: 76  L 76

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 14/34 (41%)

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN 199
               L L  N +  LPPG+ D L  L    L  N
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN 271
               EL L  N +  +P G    L +L    L +N
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 83.0 bits (206), Expect = 4e-19
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 25/130 (19%)

Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
           T+ + L+L  N I  +  G F  L  L +L L +N +  L AG F  LT LT L LN+N 
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
           L+ +   AF+   +LK L                       + L  NPW C C+ ILY++
Sbjct: 90  LKSIPRGAFD---NLKSLT---------------------HIWLLNNPWDCACSDILYLS 125

Query: 356 RWLRANRRKV 365
           RW+  +   V
Sbjct: 126 RWISQHPGLV 135

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 27/130 (20%)

Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRL 201
           S   +D S   L S+  G  +   + + L L  N+I +L PG+FD L  L  L L NN+L
Sbjct: 10  SGTTVDCSGKSLASVPTGIPT---TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66

Query: 202 SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ 261
           + +  G+F+                        +LT L +L L  N +++IP G+F NL+
Sbjct: 67  TVLPAGVFD------------------------KLTQLTQLSLNDNQLKSIPRGAFDNLK 102

Query: 262 SLEKLFLYSN 271
           SL  ++L +N
Sbjct: 103 SLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 31/80 (38%), Positives = 40/80 (50%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
            V+ L  N I  L   VF  L  L  LDL  N LT +  G F  +  L +L L  N++  
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 180 LPPGIFDDLKYLDFLSLRNN 199
           +P G FD+LK L  + L NN
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
           T +      L+ +P  +  +T  L    L  N I  L    F    +LT + L  N +  
Sbjct: 12  TTVDCSGKSLASVPTGIPTTTQVL---YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68

Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
           LPA VF  L  L +L L+ N L SI  G F  + SL  + L +N
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 4/114 (3%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
           C   C C     T+ C  + +  +P    IP   +V+ L  NQ++ L    F  L +LT 
Sbjct: 3   CPSQCSCSGT--TVDCSGKSLASVPTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTR 58

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
           L L  N L+ LP  +F     L+ + L+ N +K++P   F     LT + L  N
Sbjct: 59  LDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 82.7 bits (205), Expect = 6e-19
 Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL 296
           T  + L L  N I  +  G F +L +L++L+  SN +  +  G F  LT LT L LN+N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 297 LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMA 355
           L+ +   AF+   +LK L                       + L  NPW C+C  I+Y+ 
Sbjct: 93  LKSIPRGAFD---NLKSLT---------------------HIYLYNNPWDCECRDIMYLR 128

Query: 356 RWLRANRRKV 365
            W+  +   V
Sbjct: 129 NWVADHTSIV 138

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 29/80 (36%), Positives = 43/80 (53%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
             + L+ N I  L   VF  L++L++L  + N LT+I  G F  +  L +L L  N +  
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 180 LPPGIFDDLKYLDFLSLRNN 199
           +P G FD+LK L  + L NN
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ 179
           T+V      + S+PA +       + L L+ N +T ++ G F  + +L++L   SN++  
Sbjct: 15  TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71

Query: 180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN-W 224
           +P G+FD L  L  L L +N L  I  G F+  K LT + L  N W
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPW 117

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 3/104 (2%)

Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
           T +  +   L+ +P  +      L    L+ N I  L    F   + L  +  + N + +
Sbjct: 15  TLVNCQNIRLASVPAGIPTDKQRL---WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71

Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
           +P  VF  L  L +LDL+ N L SI  G F  + SL  + L +N
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 54.6 bits (132), Expect = 4e-09
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
           C   C C      ++C    +  +P    IP D + + L  NQ++ L    F  L  L +
Sbjct: 6   CPSQCSCDQT--LVNCQNIRLASVPAG--IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQ 61

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
           L    N L+ +P  +F     L+ +DL+ N +K++P   F     LT + L  N
Sbjct: 62  LYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 51/251 (20%), Positives = 88/251 (35%), Gaps = 54/251 (21%)

Query: 63  DAFTGLYKLTELKLRKNHLSELPGKLFIST-----INLSTMDLSQ--NLIKTLPSTFFKG 115
           D  T  Y++  L L   +L        I +       L+ + +    NL+  +P    K 
Sbjct: 44  DTDTQTYRVNNLDLSGLNLP---KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK- 99

Query: 116 AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN 175
                                   L  L  L ++   ++       S + +L  L    N
Sbjct: 100 ------------------------LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

Query: 176 RIN-QLPPGIFDDLKYLDFLSLRNNRLS-FIRPGLFNYFKHLTFLELSENWISSLNG--- 230
            ++  LPP I   L  L  ++   NR+S  I     ++ K  T + +S N    L G   
Sbjct: 136 ALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN---RLTGKIP 191

Query: 231 DEFSQLTSLKELHLGQNYIE-TIPAGSFANLQSLEKLFLYSNNIQELHAGT---FAGLTN 286
             F+ L +L  + L +N +E       F + ++ +K+ L  N++               N
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLA----FDLGKVGLSKN 245

Query: 287 LTALFLNNNLL 297
           L  L L NN +
Sbjct: 246 LNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 31/126 (24%), Positives = 46/126 (36%), Gaps = 23/126 (18%)

Query: 231 DEFSQLTSLKELHLGQNYIE---TIPAGSFANLQSLEKLFLYSNN-----IQELHAGTFA 282
           D  +Q   +  L L    +     IP+ S ANL  L  L++   N     I        A
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPP----AIA 98

Query: 283 GLTNLTALFLNNNLL-----RYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLIT 337
            LT L  L++ +  +      +L       +  L  L    N L      S+S LPNL+ 
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQ-----IKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 338 LKLAKN 343
           +    N
Sbjct: 154 ITFDGN 159

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 80.5 bits (199), Expect = 4e-18
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           +KL +  I Q     + +      L LR  ++  I   L         ++ S+N I  L+
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 58

Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL-HAGTFAGLTNLT 288
           G  F  L  LK L +  N I  I  G    L  L +L L +N++ EL      A L +LT
Sbjct: 59  G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 289 ALFLNNN 295
            L +  N
Sbjct: 117 YLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
           +V+L+   IE      + + +   ELDL    +  I+    + +     +    N I +L
Sbjct: 1   MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL 57

Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG-DEFSQLTSL 239
               F  L+ L  L + NNR+  I  GL      LT L L+ N +  L   D  + L SL
Sbjct: 58  DG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 240 KELHLGQNYIETIP 253
             L + +N +    
Sbjct: 116 TYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           ++L+   I      +++     +EL L    I  I     A L   + +    N I++L 
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL- 57

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLI 336
              F  L  L  L +NNN +  +     + +  L +L L +N L  L   D L+ L +L 
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 337 TLKLAKNP 344
            L + +NP
Sbjct: 117 YLCILRNP 124

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 98  MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
           + L+  LI+      +  A+R   + L    I  +  N+   L   + +D S N +  + 
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD 58

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR--PGLFNYFKHL 215
              F  +  LK L + +NRI ++  G+   L  L  L L NN L  +     L +  K L
Sbjct: 59  --GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS-LKSL 115

Query: 216 TFLELSEN 223
           T+L +  N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 4/118 (3%)

Query: 65  FTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
           +T   +  EL LR   +  +   L  +      +D S N I+ L    F    RL  + +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71

Query: 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQLP 181
           + N I  +   +   L  L EL L+ N L  +      + + SL  L +  N +    
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
              ID   N++  L    F  L +L  L +  N +  +   L  +  +L+ + L+ N + 
Sbjct: 44  FDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

Query: 107 TLPS-TFFKGAIRLTVVQLSYNAIESLP---ANVFHDLISLEELD 147
            L           LT + +  N + +       V + +  +  LD
Sbjct: 102 ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 82.9 bits (204), Expect = 3e-17
 Identities = 54/342 (15%), Positives = 101/342 (29%), Gaps = 14/342 (4%)

Query: 1   WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
           W+    E     CC    R    +         +       ++ VD   + +        
Sbjct: 234 WLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGR 293

Query: 61  SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLT 120
           ++ +   L  L    L           ++  + +     L ++  +           +L 
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS-ATDEQLF 352

Query: 121 VVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL 180
             +LS      L  +       L+EL+                M +L  L  +   +   
Sbjct: 353 RCELSVEKSTVLQ-SELESCKELQELEPENKWCLLTII---LLMRALDPLLYEKETLQYF 408

Query: 181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK 240
                 D     +L    ++       L   +  +  L L+   ++ L      QL  + 
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVT 466

Query: 241 ELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL 300
            L L  N +  +P    A L+ LE L    N ++ +     A L  L  L L NN L+  
Sbjct: 467 HLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQS 523

Query: 301 DT-KAFEPMLHLKKLQLDSNKLQYLA---TDSLSLLPNLITL 338
              +       L  L L  N L            +LP++ ++
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.5 bits (202), Expect = 6e-17
 Identities = 64/352 (18%), Positives = 121/352 (34%), Gaps = 58/352 (16%)

Query: 46  DIRVIDLGINQLSTLS-KDAFTGLYKLTELKLRKNHLSELP----GKLFISTINLSTMDL 100
           DI+ +D+   +LS     +    L +   ++L    L+E               L+ ++L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 101 SQNLI-----KTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHDLISLEELDLSQ 150
             N +       +       + ++  + L    +       L ++    L +L+EL LS 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL-SSTLRTLPTLQELHLSD 122

Query: 151 NVLT-----SIQYGTFSGMYSLKRLKLQSNRINQLPPGI------FDDLKYLDFLSLRNN 199
           N+L       +  G       L++L+L+   ++                     L++ NN
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AASCEPLASVLRAKPDFKELTVSNN 180

Query: 200 RLS-----FIRPGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKELHLGQNYI- 249
            ++      +  GL +    L  L+L    ++S N        +   SL+EL LG N + 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 250 ----ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA----GLTNLTALFLNNNLL---- 297
                 +  G       L  L+++   I     G          +L  L L  N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 298 -RYLDTKAFEPMLHLKKLQLDSNKL-----QYLATDSLSLLPNLITLKLAKN 343
            R L     EP   L+ L + S         + +   L+    L+ L+++ N
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS-SVLAQNRFLLELQISNN 351

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 63/350 (18%), Positives = 105/350 (30%), Gaps = 62/350 (17%)

Query: 47  IRVIDLGINQLS-----TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI----NLST 97
           ++ + L  N L       L +       +L +L+L    LS    +   S +    +   
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 98  MDLSQNLI-----KTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHDLISLEELD 147
           + +S N I     + L         +L  ++L    +       L   +     SL EL 
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIVASKASLRELA 233

Query: 148 LSQNVLT-----SIQYGTFSGMYSLKRLKLQSNRINQLPPG---IFDDLKY---LDFLSL 196
           L  N L       +  G       L+ L +    I     G   +   L+    L  LSL
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT--AKGCGDLCRVLRAKESLKELSL 291

Query: 197 RNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----TSLKELHLGQN 247
             N L       +   L      L  L +     ++     FS +      L EL +  N
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351

Query: 248 YIETIPAGSFA-----NLQSLEKLFLYSNNIQELHAGTFA----GLTNLTALFLNNNLLR 298
            +E                 L  L+L   ++ +    + A       +L  L L+NN L 
Sbjct: 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

Query: 299 YLDTKAF-----EPMLHLKKLQLDSNKL-----QYLATDSLSLLPNLITL 338
                       +P   L++L L            L        P+L  +
Sbjct: 412 DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA-LEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 67/363 (18%), Positives = 113/363 (31%), Gaps = 64/363 (17%)

Query: 47  IRVIDLGINQLSTLS----KDAFTGLYKLTELKLRKNHLSELPGKLFISTI-----NLST 97
           I+ + L    L+             L  L EL L  N L +   +L    +      L  
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 98  MDLSQNLIKTLPSTFFKGAIR----LTVVQLSYNAI-----ESLPANVFHDLISLEELDL 148
           + L    +           +R       + +S N I       L   +      LE L L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 149 SQNVLTSIQYGTFSGM----YSLKRLKLQSNRI-----NQLPPGIFDDLKYLDFLSLRNN 199
               +TS       G+     SL+ L L SN++      +L PG+      L  L +   
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 200 RLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDE---------FSQLTSLKELHLG 245
            ++      +   L    + L  L L+ N +    GDE               L+ L + 
Sbjct: 267 GITAKGCGDLCRVLRA-KESLKELSLAGNEL----GDEGARLLCETLLEPGCQLESLWVK 321

Query: 246 QNYIETIPAGSFANL----QSLEKLFLYSNNI-----QELHAGTFAGLTNLTALFLNNNL 296
                      F+++    + L +L + +N +     +EL  G     + L  L+L +  
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 297 LRYLDTKAFEPML----HLKKLQLDSNKLQYLATDSLSLL-----PNLITLKLAKNPWHC 347
           +      +    L     L++L L +N L       L          L  L L    W  
Sbjct: 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441

Query: 348 DCA 350
           +  
Sbjct: 442 EME 444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 56/302 (18%), Positives = 98/302 (32%), Gaps = 61/302 (20%)

Query: 94  NLSTMDLSQN---------LIKTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHD 139
           ++ ++D+            L+  L         +  VV+L    +     + + ++    
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQ--------QCQVVRLDDCGLTEARCKDI-SSALRV 54

Query: 140 LISLEELDLSQNVLT-----SIQYGTFSGMYSLKRLKLQSNRIN----QLPPGIFDDLKY 190
             +L EL+L  N L       +  G  +    +++L LQ+  +      +       L  
Sbjct: 55  NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 191 LDFLSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKE 241
           L  L L +N L       +  GL +    L  L+L    +S+ +              KE
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174

Query: 242 LHLGQNYI-----ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL----TNLTALFL 292
           L +  N I       +  G   +   LE L L S  +   +     G+     +L  L L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234

Query: 293 NNNLL-----RYLDTKAFEPMLHLKKLQLDSNKL-----QYLATDSLSLLPNLITLKLAK 342
            +N L       L      P   L+ L +    +       L    L    +L  L LA 
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAG 293

Query: 343 NP 344
           N 
Sbjct: 294 NE 295

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 31/174 (17%), Positives = 49/174 (28%), Gaps = 28/174 (16%)

Query: 213 KHLTFLELSENWISSLNGDE-----FSQLTSLKELHLGQNYIETIPAGSFA----NLQSL 263
             +  L++    +     D         L   + + L    +        +       +L
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 264 EKLFLYSNNIQELHAGTFA-GL----TNLTALFLNNNLLRYLDTKAFEPML----HLKKL 314
            +L L SN + ++       GL      +  L L N  L           L     L++L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 315 QLDSNKL-----QYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRR 363
            L  N L     Q L    L     L  L+L             +A  LRA   
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-PLASVLRAKPD 171

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 44/207 (21%), Positives = 68/207 (32%), Gaps = 33/207 (15%)

Query: 100 LSQNLIKTLPSTFFKGAIRLTVVQL--SYNAIESLPANVFHDLISLEELDLSQNVLTSIQ 157
             ++ I+         A     V+L      IE + A +   L + + L LS N +  I 
Sbjct: 6   TIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEKIS 64

Query: 158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTF 217
                                         ++ L  LSL  N +  I   L      L  
Sbjct: 65  S--------------------------LSGMENLRILSLGRNLIKKI-ENLDAVADTLEE 97

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQEL 276
           L +S N I+SL+G    +L +L+ L++  N I         A L  LE L L  N +   
Sbjct: 98  LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155

Query: 277 HAGTFAGLTNLTALFLNNNLLRYLDTK 303
           +    A       +      L+ LD  
Sbjct: 156 YKENNATSEYRIEVVKRLPNLKKLDGM 182

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L      I  ++    S L + K L L  N IE I   S + +++L  L L  N I+++ 
Sbjct: 30  LHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLI 336
               A    L  L+++ N +  L     E +++L+ L + +NK+      D L+ L  L 
Sbjct: 87  -NLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143

Query: 337 TLKLAKNP 344
            L LA NP
Sbjct: 144 DLLLAGNP 151

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 7/171 (4%)

Query: 35  EELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTIN 94
           EE         +   +   I  +  +     + L     L L  N++ ++         N
Sbjct: 15  EERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKISS--LSGMEN 71

Query: 95  LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT 154
           L  + L +NLIK +       A  L  + +SYN I SL       L++L  L +S N +T
Sbjct: 72  LRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKIT 128

Query: 155 SIQ-YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
           +       + +  L+ L L  N +           +Y   +  R   L  +
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 67.8 bits (166), Expect = 8e-14
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 5/131 (3%)

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
               + ++     +L       ++ L   + ++N       GL   F +L FL L    +
Sbjct: 4   GSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINVGL 61

Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL-HAGTFAGL 284
            S++     +L  LK+L L +N I          L +L  L L  N ++++        L
Sbjct: 62  ISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119

Query: 285 TNLTALFLNNN 295
             L +L L N 
Sbjct: 120 ECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%)

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           +++       L     + +  L  L   ++    I  G  A   +LE L L +  +  + 
Sbjct: 8   MDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV- 64

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLI 336
                 L  L  L L+ N +        E + +L  L L  NKL+ ++T + L  L  L 
Sbjct: 65  -SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123

Query: 337 TLKLAKNP 344
           +L L    
Sbjct: 124 SLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 8/151 (5%)

Query: 96  STMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS 155
           S MD+ + +   L +     A+R  V+    +    +   +  + ++LE L L    L S
Sbjct: 6   SGMDMKRRIHLELRNRTPA-AVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLIS 63

Query: 156 IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKH 214
           +       +  LK+L+L  NRI      + + L  L  L+L  N+L  I         + 
Sbjct: 64  VS--NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 215 LTFLELSENWISSLNG---DEFSQLTSLKEL 242
           L  L+L    +++LN      F  L  L  L
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 45  VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
           V++  + L    L ++       L KL +L+L +N +      L     NL+ ++LS N 
Sbjct: 49  VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 105 IKTLPS-TFFKGAIRLTVVQLSYNAIESLP---ANVFHDLISLEELD 147
           +K + +    K    L  + L    + +L     +VF  L  L  LD
Sbjct: 107 LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 38/254 (14%), Positives = 77/254 (30%), Gaps = 28/254 (11%)

Query: 57  LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGA 116
            S +      G   L ++ L +  +  +    F    NL    + +     L       +
Sbjct: 89  FSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS 147

Query: 117 IRLTVVQLS----YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL 172
           +    + L     Y          F +   LE       +   ++          + +  
Sbjct: 148 VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM-GKLEDEIMKAGLQPRDINF 206

Query: 173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDE 232
                      I   L   DF  +             +Y  +L  L++S+   +++    
Sbjct: 207 ---------LTIEGKLDNADFKLI------------RDYMPNLVSLDISKTNATTIPDFT 245

Query: 233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL 292
           F+Q   L ++ L  N ++TI    F+N   L        ++  +  G F G  NL  +  
Sbjct: 246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304

Query: 293 NNNLLRYLDTKAFE 306
             + +  L  + F 
Sbjct: 305 TGDKITTLGDELFG 318

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 36/225 (16%), Positives = 77/225 (34%), Gaps = 16/225 (7%)

Query: 94  NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS----YNAIESLPANVFHDLISLEELDLS 149
           +L  +D+S   IK               + ++      A  ++   V     +LE++ LS
Sbjct: 50  SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS 109

Query: 150 QNVLTSIQYGTFSGMYSLKRLKL-QSNRINQLPPGIFDDLKYLDF---LSLRNNRLSFIR 205
           + +  +I+   F G  +LK  ++ +    N LP  + D +  +      S      +   
Sbjct: 110 EKI-KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168

Query: 206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ---- 261
              F   + L         +  L  +        ++++        +    F  ++    
Sbjct: 169 HFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRDYMP 226

Query: 262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFE 306
           +L  L +   N   +   TFA    L  + L +N L+ +  + F 
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 33/184 (17%)

Query: 89  FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLI----SLE 144
           FI    L T       +  L     K  ++   +         L    F  +     +L 
Sbjct: 172 FIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFL-TIEGKLDNADFKLIRDYMPNLV 229

Query: 145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI 204
            LD+S+   T+I   TF+    L ++KL  N                         L  I
Sbjct: 230 SLDISKTNATTIPDFTFAQKKYLLKIKLPHN-------------------------LKTI 264

Query: 205 RPGLFNYFKHLT-FLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL 263
              +F+    L   LEL  + ++++    F    +L+ +    + I T+    F N    
Sbjct: 265 GQRVFSNCGRLAGTLELPAS-VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323

Query: 264 EKLF 267
           + ++
Sbjct: 324 KLIY 327

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 194 LSLRNNRLSFIR-PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
           L L N+R +  +  GL + F+ L FL      ++S+      +L  LK+L L  N +   
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGG 79

Query: 253 PAGSFANLQSLEKLFLYSNNIQEL-HAGTFAGLTNLTALFLNNN 295
                    +L  L L  N I++L        L NL +L L N 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 7/130 (5%)

Query: 142 SLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
            ++EL L  +     +  G       L+ L   +  +  +       L  L  L L +NR
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR 75

Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNG-DEFSQLTSLKELHLGQNYIETIP---AGS 256
           +S     L     +LT L LS N I  L+  +   +L +LK L L    +  +       
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135

Query: 257 FANLQSLEKL 266
           F  L  L  L
Sbjct: 136 FKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 5/118 (4%)

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL 287
           L     S +  L   +   N  +    G     + LE L   +  +  +       L  L
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLE--GLTDEFEELEFLSTINVGLTSI--ANLPKLNKL 66

Query: 288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNP 344
             L L++N +        E   +L  L L  NK++ L+T + L  L NL +L L    
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 7/132 (5%)

Query: 212 FKHLTFLELSENWISSLNGDE-FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS 270
              +  L L  +  +    +    +   L+ L      + +I   +   L  L+KL L  
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSN---KLQYLAT 326
           N +            NLT L L+ N ++ L T +  + + +LK L L +     L     
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133

Query: 327 DSLSLLPNLITL 338
           +   LLP L  L
Sbjct: 134 NVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 6/104 (5%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
           L  +      + S+       L  L++L+LS N ++           +L  L L  N+I 
Sbjct: 44  LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

Query: 179 QLP-PGIFDDLKYLDFLSLRNN---RLSFIRPGLFNYFKHLTFL 218
            L        L+ L  L L N     L+  R  +F     LT+L
Sbjct: 102 DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 45  VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNL 104
            ++  +      L++++      L KL +L+L  N +S     L     NL+ ++LS N 
Sbjct: 42  EELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 105 IKTLPS-TFFKGAIRLTVVQLSYNAIESLP---ANVFHDLISLEELD 147
           IK L +    K    L  + L    + +L     NVF  L  L  LD
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 50/329 (15%), Positives = 112/329 (34%), Gaps = 61/329 (18%)

Query: 70  KLTELKLRKNHLSELPGKLFISTI-----NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL 124
            +T L L  N+L  +     I        ++++++LS N +        K +  L     
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF------KNSDELV---- 72

Query: 125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM-----YSLKRLKLQSNRI-- 177
               + ++PA       ++  L+LS N L+               +++  L L  N    
Sbjct: 73  --QILAAIPA-------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123

Query: 178 ---NQLPPGIFDDLKYLDFLSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLN 229
              ++      +    +  L+LR N L       +   L     ++  L L  N ++S N
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 230 GDEFSQL-----TSLKELHLGQNYIETIPAGSFA-----NLQSLEKLFLYSNNIQELHAG 279
             E ++       S+  L L  N +        A         +  L L  N +      
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 280 TFAGL----TNLTALFLNNNLLRYLDTK-------AFEPMLHLKKLQLDSNKLQYLATDS 328
               L     +L  ++L+ ++++ +  +       AF  +  +  +  +  ++    +  
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303

Query: 329 LSLLPNLITLKLAKNPWHCDCAILYMARW 357
           +S L   ++ K    P   +  +++  + 
Sbjct: 304 ISNLIRELSGKA-DVPSLLNQCLIFAQKH 331

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 46/304 (15%), Positives = 93/304 (30%), Gaps = 51/304 (16%)

Query: 70  KLTELKLRKNHLSELPGKLFISTI-----NLSTMDLSQNLI-----KTLPSTFFKGAIRL 119
            +T L L  N L        +  +     N+++++LS N +       L  T       +
Sbjct: 52  SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111

Query: 120 TVVQLSYNAI-----ESLPANVFHDLISLEELDLSQNVLT-----SIQYGTFSGMYSLKR 169
           TV+ L +N               +   S+  L+L  N L       +     +   ++  
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171

Query: 170 LKLQSNRIN-----QLPPGIFDDLKYLDFLSLRNNRL-----SFIRPGLFNYFKHLTFLE 219
           L L+ N +      +L   +      +  L L  N L     + +     +   H+  L 
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 220 LSENWISSLNGDEFSQL----TSLKELHLGQNYIETIP-------AGSFANLQSLEKLFL 268
           L  N +   + +    L      L+ ++L  + ++ +          +F N+Q +  +  
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 269 YSNNIQELHAGTFAGL-----TNLTALFLNNNLLRYLDTKAFEPML-----HLKKLQLDS 318
               I   H+   + L            L N  L +                L++     
Sbjct: 292 NGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTC 351

Query: 319 NKLQ 322
             L 
Sbjct: 352 KPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 27/157 (17%)

Query: 213 KHLTFLELSENWISSLNGDEFSQL-----TSLKELHLGQNYIETIPAGSFA-----NLQS 262
             +T L+LS N + S++  E  Q       S+  L+L  N +    +            +
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 263 LEKLFLYSNNIQELHAGTFAGL-----TNLTALFLNNNLLRYLDTKAFEPML-----HLK 312
           +  L L  N +    +             +T L L  N      +  F+         + 
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 313 KLQLDSNKL-----QYLATDSLSLLP-NLITLKLAKN 343
            L L  N L       L    L+ +P N+ +L L  N
Sbjct: 142 SLNLRGNDLGIKSSDELI-QILAAIPANVNSLNLRGN 177

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 52/319 (16%), Positives = 88/319 (27%), Gaps = 75/319 (23%)

Query: 71  LTELKLRKNHLSELPGKLFISTI----NLSTMDLSQNLIKTLPSTFFKGAI--------- 117
           + E+ L  N +     +     I    +L   + S      +     +            
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 118 -RLTVVQLSYNAIESLPANVFHDLI----SLEELDLSQNVLT-------------SIQYG 159
            +L  V+LS NA          D +     LE L L  N L                   
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 160 TFSGMYSLKRLKLQSNRINQLPPGI------FDDLKYLDFLSLRNNRL------SFIRPG 207
                  L+ +    NR+      +      F   + L  + +  N +        +  G
Sbjct: 154 KAKNAPPLRSIICGRNRLE--NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 208 LFNYFKHLTFLELSENWISSLNGDE--------FSQLTSLKELHLGQNYIETIPAGSFAN 259
           L  Y + L  L+L +N                      +L+EL L    +    A +  +
Sbjct: 212 L-AYCQELKVLDLQDNTF----THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 260 L------QSLEKLFLYSNNIQELHAGTFA-----GLTNLTALFLNNNLLRYLD------T 302
                    L+ L L  N I+     T        + +L  L LN N     D       
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326

Query: 303 KAFEPMLHLKKLQLDSNKL 321
           + F      +  +LD  + 
Sbjct: 327 EVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 53/301 (17%), Positives = 97/301 (32%), Gaps = 61/301 (20%)

Query: 119 LTVVQLSYNAI-----ESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGM----YSLKR 169
           +    L  +AI     +S+   V  +  S++E+ LS N + +      S        L+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSV-FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 170 LKLQSNRINQLPPGIFDDLKY----------LDFLSLRNNRL-----SFIRPGLFNYFKH 214
            +       ++   I + L+           L  + L +N         +   L  +   
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TP 123

Query: 215 LTFLELSENWIS-------------SLNGDEFSQLTSLKELHLGQNYIETIPAGSFA--- 258
           L  L L  N +                   +      L+ +  G+N +E      +A   
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 259 -NLQSLEKLFLYSNNI-----QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML--- 309
            + + L  + +  N I     + L     A    L  L L +N   +L + A    L   
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 310 -HLKKLQLDSNKL-----QYLATDSLSLLPN--LITLKLAKNPWHCDCAILYMARWLRAN 361
            +L++L L+   L       +  D+ S L N  L TL+L  N    D     +   +   
Sbjct: 244 PNLRELGLNDCLLSARGAAAVV-DAFSKLENIGLQTLRLQYNEIELDAVRT-LKTVIDEK 301

Query: 362 R 362
            
Sbjct: 302 M 302

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 45/253 (17%), Positives = 72/253 (28%), Gaps = 54/253 (21%)

Query: 142 SLEELDLSQNVLTS--IQY--GTFSGMYSLKRLKLQSNRINQLPPGIF---------DDL 188
           S+E   L  + +T+   +          S+K + L  N I                  DL
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIG--TEAARWLSENIASKKDL 62

Query: 189 KYLDFLSLRNNRLSFIRPGLFNYF-------KHLTFLELSENWISSLNGDEFSQL----T 237
           +  +F  +   R+    P               L  + LS+N       +         T
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 238 SLKELHLGQNYI-------------ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA-- 282
            L+ L+L  N +             E        N   L  +    N ++      +A  
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 283 --GLTNLTALFLNNNLLR-----YLDTKAFEPMLHLKKLQLDSNKL-----QYLATDSLS 330
                 L  + +  N +R     +L  +       LK L L  N         LA  +L 
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALK 241

Query: 331 LLPNLITLKLAKN 343
             PNL  L L   
Sbjct: 242 SWPNLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 53/241 (21%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYK----LTELKLRKNHLSELPGKLFISTI--------- 93
           +  + L  N     +++           L  L L  N L    G      +         
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155

Query: 94  ----NLSTMDLSQNLI-----KTLPSTFFKGAIRLTVVQLSYNAI-----ESLPANVFHD 139
                L ++   +N +     K   +  F+    L  V++  N I     E L       
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 140 LISLEELDLSQNVLTS--IQY--GTFSGMYSLKRLKLQSNRI---------NQLPPGIFD 186
              L+ LDL  N  T               +L+ L L    +         +        
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274

Query: 187 DLKYLDFLSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE 241
            L+ L    L+ N +       ++  +      L FLEL+ N       +E   +  ++E
Sbjct: 275 GLQTLR---LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF----SEEDDVVDEIRE 327

Query: 242 L 242
           +
Sbjct: 328 V 328

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 41/252 (16%), Positives = 80/252 (31%), Gaps = 52/252 (20%)

Query: 55  NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFK 114
             L ++   AF     + E+      L +L   +F    NL   DLS+  I  LP++ F 
Sbjct: 144 EGLKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV 201

Query: 115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS 174
               +  V L    ++ + +  F     L+ +++ +NV ++I    F     +  +KL +
Sbjct: 202 Y-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENV-STIGQEAFRE-SGITTVKLPN 257

Query: 175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS 234
                                     ++ I    F Y   L  +    +  +        
Sbjct: 258 G-------------------------VTNIASRAFYYCPELAEVTTYGSTFND------- 285

Query: 235 QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
                       +    I          L +  +   +I+ L  G   G   +T L +  
Sbjct: 286 ------------DPEAMIHPYCLEGCPKLARFEI-PESIRILGQGLLGGNRKVTQLTIPA 332

Query: 295 NLLRYLDTKAFE 306
           N +  ++  AF 
Sbjct: 333 N-VTQINFSAFN 343

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 22/174 (12%), Positives = 60/174 (34%), Gaps = 14/174 (8%)

Query: 57  LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGA 116
           L  +   AF    +L  +++ +N +S +  + F  +  ++T+ L    +  + S  F   
Sbjct: 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRES-GITTVKLPNG-VTNIASRAFYYC 270

Query: 117 IRLTVVQLS-----YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK 171
             L  V         +    +          L   ++ +++   +  G   G   + +L 
Sbjct: 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI-RILGQGLLGGNRKVTQLT 329

Query: 172 LQSNRINQLPPGIFDD--LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
           + +N + Q+    F++  +K +                 + +   +T + +   
Sbjct: 330 IPAN-VTQINFSAFNNTGIKEVKVEG--TTPPQVFEKVWYGFPDDITVIRVPAE 380

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 45/240 (18%), Positives = 83/240 (34%), Gaps = 35/240 (14%)

Query: 142 SLEELDLSQNVLTSIQ-----YGTFSGMYSLKRLKLQSNRINQLPPG---IFDDLKYLDF 193
           SL +L+L+   +T ++         SG ++L  + L S +++  P G   +         
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRARK 130

Query: 194 LSLRNNRLS-----FIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL----TSLKELHL 244
           L L+ N L       +R  L +    +T L LS N +++       +     TS+  L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 245 GQNYIETIPAGSFANL----QSLEKLFLYSNNIQELHAGTFAGL----TNLTALFLNNNL 296
               +        A      + L++L +  N   +  A   A       +L  L L  N 
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 297 LRYLDTKAF-------EPMLHLKKLQLDSNKLQYLATDSLS-LLPNLITLKLAKNPWHCD 348
           L     +         E    +     +   +    +  LS +  NL +   A+   H +
Sbjct: 251 LSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLE 310

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 33/170 (19%), Positives = 54/170 (31%), Gaps = 22/170 (12%)

Query: 213 KHLTFLELSENWISSLNGDEFSQL-----TSLKELHLGQNYIETIPAGSFAN-LQSLEKL 266
             L  L L+   ++ +     + +      +L E++L    ++     +         KL
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 267 FLYSNNIQELHAGTFAGL-----TNLTALFLNNNLLRYLDTKAFEPML----HLKKLQLD 317
            L  N++          L       +T L L+NN L           L     +  L L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 318 SNKL-----QYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANR 362
              L     + LA   L     L  L +A N      A L +AR  R + 
Sbjct: 192 HTGLGDEGLELLA-AQLDRNRQLQELNVAYNGAGDTAA-LALARAAREHP 239

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 44/248 (17%), Positives = 73/248 (29%), Gaps = 48/248 (19%)

Query: 142 SLEELDLSQNVLTSIQYGTF-SGMYSLKRLKLQSNRI-----NQLPPGIFDDLKYLDFLS 195
           +L+E++L+   L      T        ++L LQ N +       L   +  D   +  L 
Sbjct: 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLR 161

Query: 196 LRNNRLS-----FIRPGL-FNYFKHLTFLELSENWISSLNGDEFSQL----TSLKELHLG 245
           L NN L+      +  GL  N    +T L L    +     +  +        L+EL++ 
Sbjct: 162 LSNNPLTAAGVAVLMEGLAGN--TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219

Query: 246 QNYIETIPAGSFANL----QSLEKLFLYSNNIQEL-------HAGTFAGLTNLTALFLNN 294
            N      A + A       SLE L LY N +            G   G   +       
Sbjct: 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEG 279

Query: 295 NLL---------------RYLDTKAFEPMLHLKKLQLDSNKLQYLA----TDSLSLLPNL 335
             +                  D    +  L L    L+ ++   L        L +   +
Sbjct: 280 TAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEV 339

Query: 336 ITLKLAKN 343
             L     
Sbjct: 340 RALLEQLG 347

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 25/136 (18%), Positives = 42/136 (30%), Gaps = 23/136 (16%)

Query: 228 LNGDEFSQ--LTSLKELHLGQNYIETIPAGSFA-------NLQSLEKLFLYSNNIQELHA 278
                FS   L+SL++L+L    +   P               +L+++ L S  +     
Sbjct: 61  FQNQRFSAEVLSSLRQLNLAGVRMT--PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL 118

Query: 279 GTFA-GLTNLTALFLNNNLLRYLDTKAF-----EPMLHLKKLQLDSNKL-----QYLATD 327
            T          L L  N L     K            +  L+L +N L       L  +
Sbjct: 119 RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM-E 177

Query: 328 SLSLLPNLITLKLAKN 343
            L+   ++  L L   
Sbjct: 178 GLAGNTSVTHLSLLHT 193

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 47/363 (12%), Positives = 111/363 (30%), Gaps = 83/363 (22%)

Query: 57  LSTLSKDAFTGLYKLTELKLRKNHL---SELPGKLFI------STINLSTMDLSQNLIKT 107
            ++ S  +     ++  ++     L         L +      +    +  +LS    K 
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLS---CKI 268

Query: 108 LPSTFFKGAI-RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYS 166
           L +T FK     L+    ++ +++     +  D    E   L    L             
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYL---------DC-R 314

Query: 167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS---EN 223
            + L  +    N     I  +        +R+          ++ +KH+   +L+   E+
Sbjct: 315 PQDLPREVLTTNPRRLSIIAES-------IRDG------LATWDNWKHVNCDKLTTIIES 361

Query: 224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL----------QSLEKLFLYS--- 270
            ++ L   E+ ++     L +       IP    + +            + KL  YS   
Sbjct: 362 SLNVLEPAEYRKM--FDRLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 271 ----NNIQELHAGTFAGLTNLTALF-LNNNLL-RYLDTKAFEPMLHLKKLQLDSNKLQYL 324
                +   + +        L   + L+ +++  Y   K F+    L    LD     ++
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHI 477

Query: 325 A--------TDSLSLLPNLIT--------LKLAKNPWHCDCAILYMARWLRANRRKVWDS 368
                     + ++L   +          ++     W+   +IL   + L+  +  + D+
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 369 KPT 371
            P 
Sbjct: 538 DPK 540

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 40.7 bits (94), Expect = 6e-04
 Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 22/181 (12%)

Query: 87  KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL 146
            LF   I+    ++S      L S        L  +++      S+         +L+ L
Sbjct: 143 GLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNLSIGKKPRP---NLKSL 198

Query: 147 DLSQNVLTS--IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDL---------KYLDFLS 195
           ++    L    ++    S + +L++L L     +    G  +             L +L 
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258

Query: 196 LRNNRLSFIRPGLF---NYFKHLTFLELSENWISSLNGDEFSQ----LTSLKELHLGQNY 248
           + +     +   +F   +    L  +++S   ++             +  LK +++  NY
Sbjct: 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318

Query: 249 I 249
           +
Sbjct: 319 L 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	404
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.97
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.97
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.97
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.94
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.94
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.94
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.93
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.92
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.92
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.89
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.87
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.87
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.85
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.85
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.84
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.78
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.76
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.73
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.72
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.65
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.15
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.64
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	92.79

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.4e-52  Score=396.18  Aligned_cols=372  Identities=28%  Similarity=0.417  Sum_probs=343.4

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST   92 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   92 (404)
                      .||..|.|....+.++|.+.+++.+|..  ++.++++|++++|.++.+.+..|.++++|++|++++|.+..+.+..|.++
T Consensus         2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l   79 (477)
T 2id5_A            2 GCPPRCECSAQDRAVLCHRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL   79 (477)
T ss_dssp             CCSTTCEEETTTTEEECCSCCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             cccCCCeECCCCCEEEeCCCCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC
Confidence            5899999998889999999999999986  78899999999999999999999999999999999999999988889999


Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEec
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL  172 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  172 (404)
                      ++|++|++++|.++.++...|.++++|++|++++|.+..+.+..|..+++|+.|++++|.+..+.+..|.++++|++|++
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence            99999999999999999988999999999999999999998888999999999999999999999889999999999999


Q ss_pred             cCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCccc
Q psy12291        173 QSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI  252 (404)
Q Consensus       173 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  252 (404)
                      ++|.++.+++..|..+++|+.|++++|.+..+.+..+..+++|+.|++++|......+.......+|+.|++++|.+..+
T Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred             CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence            99999999988889999999999999999999888999999999999999876554434444556999999999999999


Q ss_pred             CcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCC
Q psy12291        253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL  332 (404)
Q Consensus       253 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  332 (404)
                      +...+..+++|+.|++++|.++.++...|..+++|++|++++|+++.+.+..|..+++|+.|+|++|+++.+++..+..+
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence            98789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCC
Q psy12291        333 PNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSF  388 (404)
Q Consensus       333 ~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~  388 (404)
                      ++|+.|++++|||.|||.+.|+.+|...  ..+.....+|++|..++|+.+.++..
T Consensus       320 ~~L~~L~l~~N~l~c~c~~~~~~~~~~~--~~~~~~~~~C~~p~~~~g~~l~~~~~  373 (477)
T 2id5_A          320 GNLETLILDSNPLACDCRLLWVFRRRWR--LNFNRQQPTCATPEFVQGKEFKDFPD  373 (477)
T ss_dssp             GGCCEEECCSSCEECSGGGHHHHTTTTS--SCCTTCCCBEEESGGGTTCBGGGSCS
T ss_pred             cccCEEEccCCCccCccchHhHHhhhhc--cccCccCceeCCchHHcCCchhhCcc
Confidence            9999999999999999999988876532  22333478999999999999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=7.8e-50  Score=395.69  Aligned_cols=377  Identities=25%  Similarity=0.381  Sum_probs=303.7

Q ss_pred             CCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCC
Q psy12291         15 EGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTIN   94 (404)
Q Consensus        15 ~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~   94 (404)
                      +..|.|......++|.+.+++.||.+  +|.++++||+++|+|+.+.+.+|.++++|++|+|++|+|+.+++++|.++++
T Consensus        24 ~~~c~~~~~~~~~~c~~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~  101 (635)
T 4g8a_A           24 WEPCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH  101 (635)
T ss_dssp             -CCSEEEETTTEEECTTSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CCCccccCCCCEEECCCCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCC
Confidence            35688877778899999999999987  8999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEecc
Q psy12291         95 LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQ  173 (404)
Q Consensus        95 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~  173 (404)
                      |++|+|++|+++.+++..|.++++|++|++++|.++.++...|+++++|++|++++|.+..+. +..+..+++|++|+++
T Consensus       102 L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          102 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             CCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             CCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            999999999999999999999999999999999999999988999999999999999988754 4567788899999998


Q ss_pred             CCCCCCCCCCccCC------------------------------------------------------------------
Q psy12291        174 SNRINQLPPGIFDD------------------------------------------------------------------  187 (404)
Q Consensus       174 ~~~l~~~~~~~~~~------------------------------------------------------------------  187 (404)
                      +|.++.+.+..|..                                                                  
T Consensus       182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  261 (635)
T 4g8a_A          182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  261 (635)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             CccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence            88765432211110                                                                  


Q ss_pred             --------------------------------------------------------------------------------
Q psy12291        188 --------------------------------------------------------------------------------  187 (404)
Q Consensus       188 --------------------------------------------------------------------------------  187 (404)
                                                                                                      
T Consensus       262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  341 (635)
T 4g8a_A          262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG  341 (635)
T ss_dssp             TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES
T ss_pred             ccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc
Confidence                                                                                            


Q ss_pred             ----------------------------CCCCCeEecCCCcCccc-----------------------------------
Q psy12291        188 ----------------------------LKYLDFLSLRNNRLSFI-----------------------------------  204 (404)
Q Consensus       188 ----------------------------l~~L~~L~l~~~~~~~~-----------------------------------  204 (404)
                                                  +++|+.+++++|.+...                                   
T Consensus       342 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~  421 (635)
T 4g8a_A          342 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQ  421 (635)
T ss_dssp             SCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTT
T ss_pred             CcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccc
Confidence                                        01122222222111000                                   


Q ss_pred             ---------------CCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCC-cccCcccccCCCCCcEEEC
Q psy12291        205 ---------------RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI-ETIPAGSFANLQSLEKLFL  268 (404)
Q Consensus       205 ---------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~l~~L~~L~L  268 (404)
                                     ....+..+++++.++++.|.+....+..+..+++|+.|++++|.+ ..+.+..+..+++|+.|+|
T Consensus       422 L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~L  501 (635)
T 4g8a_A          422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL  501 (635)
T ss_dssp             CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred             ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEEC
Confidence                           001112223333333344444444444455667778888888764 3445557888999999999


Q ss_pred             cCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCC-CCCcEEEccCCcccc
Q psy12291        269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL-PNLITLKLAKNPWHC  347 (404)
Q Consensus       269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~l~~Np~~C  347 (404)
                      ++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+++++++..+..+ ++|+.|++++|||.|
T Consensus       502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999989888 689999999999999


Q ss_pred             ccCcHHHHHHHHhccCcccCC-CCeeCCCCCCCCCcccCCCCcCCCCcc
Q psy12291        348 DCAILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCEGQ  395 (404)
Q Consensus       348 ~c~~~~~~~~~~~~~~~~~~~-~~~C~~p~~l~~~~l~~~~~~~~C~~~  395 (404)
                      ||++.||.+|+++....+.+. .++|++|+.++|+++.+++.  .|+-.
T Consensus       582 ~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~~--~C~~~  628 (635)
T 4g8a_A          582 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI--TCQMT  628 (635)
T ss_dssp             SGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCCC--CC---
T ss_pred             cCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeecc--CCCCC
Confidence            999999999999877665443 78999999999999999964  47643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.2e-47  Score=373.35  Aligned_cols=373  Identities=25%  Similarity=0.361  Sum_probs=270.9

Q ss_pred             CceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCC
Q psy12291         17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS   96 (404)
Q Consensus        17 ~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~   96 (404)
                      .|.|......++|.+.+++.+|..  ++.++++|++++|.++.+.+.+|.++++|++|++++|.+.++++..|.++++|+
T Consensus         6 ~c~~~~~~~~~~c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A            6 PCIEVVPNITYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             CCEEEETTTEEECTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CceecCCCCceEccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            477766678999999999999986  778999999999999999888899999999999999999999888889999999


Q ss_pred             EEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCC
Q psy12291         97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSN  175 (404)
Q Consensus        97 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~  175 (404)
                      +|++++|.++.+++..|.++++|++|++++|.++.+++..++++++|++|++++|.+.... +..+.++++|++|++++|
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            9999999999887777889999999999999888877666777778888888777776533 455666666666666665


Q ss_pred             CCCCCCCCc-----------------------------------------------------------------------
Q psy12291        176 RINQLPPGI-----------------------------------------------------------------------  184 (404)
Q Consensus       176 ~l~~~~~~~-----------------------------------------------------------------------  184 (404)
                      .++.+++..                                                                       
T Consensus       164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~  243 (606)
T 3vq2_A          164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD  243 (606)
T ss_dssp             CCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred             cceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence            544322110                                                                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy12291        185 --------------------------------------------------------------------------------  184 (404)
Q Consensus       185 --------------------------------------------------------------------------------  184 (404)
                                                                                                      
T Consensus       244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp  323 (606)
T 3vq2_A          244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP  323 (606)
T ss_dssp             SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC
T ss_pred             CCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc
Confidence                                                                                            


Q ss_pred             ----------------------cCCCCCCCeEecCCCcCc----------------------------------------
Q psy12291        185 ----------------------FDDLKYLDFLSLRNNRLS----------------------------------------  202 (404)
Q Consensus       185 ----------------------~~~l~~L~~L~l~~~~~~----------------------------------------  202 (404)
                                            +..+++|++|++++|.++                                        
T Consensus       324 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~  403 (606)
T 3vq2_A          324 TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH  403 (606)
T ss_dssp             CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred             cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence                                  011223334444433322                                        


Q ss_pred             ---------ccCC-CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc-cCcccccCCCCCcEEECcCC
Q psy12291        203 ---------FIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET-IPAGSFANLQSLEKLFLYSN  271 (404)
Q Consensus       203 ---------~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~n  271 (404)
                               ...+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.. +.+..+..+++|+.|++++|
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence                     1111 233344445555555555554444556666677777777776665 23446777888888888888


Q ss_pred             CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCC-CCcEEEccCCccccccC
Q psy12291        272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNPWHCDCA  350 (404)
Q Consensus       272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~Np~~C~c~  350 (404)
                      .++.+.+..|..+++|++|++++|+++.+.+..+..+++|+.|++++|+++.++.. +..++ +|+.+++++|||.|+|+
T Consensus       484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCc
Confidence            88888888888899999999999999998888899999999999999999988776 77776 69999999999999999


Q ss_pred             cHHHHHHHHhccCcccCC-CCeeCCCCCCCCCcccCCCCcCCCC
Q psy12291        351 ILYMARWLRANRRKVWDS-KPTCRGPGNLGGKSVEDMSFDDLCE  393 (404)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~-~~~C~~p~~l~~~~l~~~~~~~~C~  393 (404)
                      +.|+.+|++.....+.+. ..+|++|+.++|+++.++.... |+
T Consensus       563 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~-c~  605 (606)
T 3vq2_A          563 HQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNST-CY  605 (606)
T ss_dssp             THHHHTTTTTSSSSBSSGGGCCCC--------------------
T ss_pred             cHHHHHHHHcCcccccCCccceeCCChHhCCCEeeeccccc-CC
Confidence            999999998876655443 7899999999999999998654 64

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-46  Score=357.95  Aligned_cols=358  Identities=28%  Similarity=0.427  Sum_probs=309.9

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc-ccCcccccC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIS   91 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~   91 (404)
                      -|+..|.|.  ...++|.+.+++.+|.   ++.++++|++++|.+..+.+..|.++++|++|++++|.+. .+++..|..
T Consensus         3 p~~~~c~~~--~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~   77 (455)
T 3v47_A            3 PGTSECSVI--GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG   77 (455)
T ss_dssp             ----CCEEE--TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT
T ss_pred             CccceeEEE--ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc
Confidence            467778876  4679999999999997   7789999999999999998899999999999999999987 787888999


Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCc--CCCccCCCCCCCCEEECCCCccccccccc-ccCCccCc
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES--LPANVFHDLISLEELDLSQNVLTSIQYGT-FSGMYSLK  168 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-l~~l~~L~  168 (404)
                      +++|++|++++|.++.+++..|.++++|++|++++|.++.  .....|..+++|++|++++|.+..+.+.. +.++++|+
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            9999999999999999877779999999999999999986  34455888999999999999999887665 78999999


Q ss_pred             EEeccCCCCCCCCCCccCCC----------------------------------CCCCeEecCCCcCcccCCCcc-----
Q psy12291        169 RLKLQSNRINQLPPGIFDDL----------------------------------KYLDFLSLRNNRLSFIRPGLF-----  209 (404)
Q Consensus       169 ~L~l~~~~l~~~~~~~~~~l----------------------------------~~L~~L~l~~~~~~~~~~~~~-----  209 (404)
                      +|++++|.++.+.+..+..+                                  ++|++|++++|.++...+..+     
T Consensus       158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~  237 (455)
T 3v47_A          158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA  237 (455)
T ss_dssp             EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred             EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence            99999999988766544433                                  568888888886643211111     


Q ss_pred             --------------------------------C--CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc
Q psy12291        210 --------------------------------N--YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG  255 (404)
Q Consensus       210 --------------------------------~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  255 (404)
                                                      .  ..++|+.|++++|.+....+..+..+++|++|++++|.+..+++.
T Consensus       238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  317 (455)
T 3v47_A          238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN  317 (455)
T ss_dssp             TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence                                            0  125799999999999988888899999999999999999999887


Q ss_pred             cccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCC
Q psy12291        256 SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL  335 (404)
Q Consensus       256 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  335 (404)
                      .+..+++|+.|++++|.++.+.+..|..+++|++|++++|+++.+.+..+..+++|++|++++|+++++++..+..+++|
T Consensus       318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  397 (455)
T 3v47_A          318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL  397 (455)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence            89999999999999999999988899999999999999999999989999999999999999999999999888999999


Q ss_pred             cEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCC
Q psy12291        336 ITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG  376 (404)
Q Consensus       336 ~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~  376 (404)
                      +.|++++||+.|+|+ +.|+.+|+....... .....|++|+
T Consensus       398 ~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~-~~~~~c~~~~  438 (455)
T 3v47_A          398 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-QGSAKCSGSG  438 (455)
T ss_dssp             CEEECCSSCBCCCTTTTHHHHHHHHHTTTTE-ESCCBBTTTC
T ss_pred             cEEEccCCCcccCCCcchHHHHHHHhCccce-eeeeeecCCC
Confidence            999999999999998 778899998765543 2357898864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.2e-45  Score=357.71  Aligned_cols=341  Identities=25%  Similarity=0.375  Sum_probs=309.5

Q ss_pred             CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS  125 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  125 (404)
                      .++.|++++|.+..+.+..|.++++|++|++++|+++.+|.. +..+++|++|++++|.++.+++..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            578888888899888888899999999999999999988875 5889999999999999999877778999999999999


Q ss_pred             CCCCC-cCCCccCCCCCCCCEEECCCCcccccc--cccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCc
Q psy12291        126 YNAIE-SLPANVFHDLISLEELDLSQNVLTSIQ--YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS  202 (404)
Q Consensus       126 ~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  202 (404)
                      +|.+. .++...+..+++|+.|++++|.+....  +..+..+++|++|++++|.+..+++..|..+++|++|++++|.+.
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            99887 677777889999999999999998876  667889999999999999999998888999999999999999998


Q ss_pred             ccCC-CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCccc--C-cccccCCCCCcEEECcCCCcccccc
Q psy12291        203 FIRP-GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI--P-AGSFANLQSLEKLFLYSNNIQELHA  278 (404)
Q Consensus       203 ~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~-~~~~~~l~~L~~L~L~~n~l~~~~~  278 (404)
                      ...+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+...  + ...+..+++|+.|++++|.++.+.+
T Consensus       414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  493 (606)
T 3t6q_A          414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ  493 (606)
T ss_dssp             CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred             CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence            7654 4488999999999999999998888899999999999999998762  2 2468889999999999999999988


Q ss_pred             ccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHH
Q psy12291        279 GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL  358 (404)
Q Consensus       279 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~  358 (404)
                      ..|..+++|++|++++|+++.+.+..+..++.| .|++++|+++++++..+..+++|+.+++++|||.|+|...|+..|+
T Consensus       494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~  572 (606)
T 3t6q_A          494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY  572 (606)
T ss_dssp             TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred             hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence            899999999999999999999999999999999 9999999999999988999999999999999999999999999999


Q ss_pred             HhccCcccCC-CCeeCCCCCCCCCcccCCCC
Q psy12291        359 RANRRKVWDS-KPTCRGPGNLGGKSVEDMSF  388 (404)
Q Consensus       359 ~~~~~~~~~~-~~~C~~p~~l~~~~l~~~~~  388 (404)
                      +.....+... ..+|++|+.++|+++.+++.
T Consensus       573 ~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          573 KENMQKLEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             HHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             HhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence            9876555443 78999999999999999964

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.1e-44  Score=350.04  Aligned_cols=364  Identities=21%  Similarity=0.311  Sum_probs=286.9

Q ss_pred             CCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCC
Q psy12291         16 GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINL   95 (404)
Q Consensus        16 ~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L   95 (404)
                      ..|.|... +.++|.+++++.+|..  ++.++++|++++|.+..+.+.+|.++++|++|++++|+++++++..|..+++|
T Consensus        26 ~~~~~~~~-~~l~ls~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  102 (562)
T 3a79_B           26 TPFSNELE-SMVDYSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL  102 (562)
T ss_dssp             -------C-CEEECTTSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             cccccCCC-cEEEcCCCCCccCCCC--CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence            34555554 8999999999999986  66899999999999999999999999999999999999999998889999999


Q ss_pred             CEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCcccccccccccCC----------
Q psy12291         96 STMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTFSGM----------  164 (404)
Q Consensus        96 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l----------  164 (404)
                      ++|++++|.++.+|..   .+++|++|++++|.++.++ +..|.++++|++|++++|.+.......+..+          
T Consensus       103 ~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          103 EYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEES
T ss_pred             CEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecc
Confidence            9999999999999875   7999999999999999876 3678889999999999987754221111111          


Q ss_pred             -----------------------------------------c--------------------------------------
Q psy12291        165 -----------------------------------------Y--------------------------------------  165 (404)
Q Consensus       165 -----------------------------------------~--------------------------------------  165 (404)
                                                               +                                      
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~  259 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI  259 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence                                                     0                                      


Q ss_pred             -----------------cCcEEeccCCCCC-CCCCCcc------------------------------------------
Q psy12291        166 -----------------SLKRLKLQSNRIN-QLPPGIF------------------------------------------  185 (404)
Q Consensus       166 -----------------~L~~L~l~~~~l~-~~~~~~~------------------------------------------  185 (404)
                                       +|++|++++|.++ .++...|                                          
T Consensus       260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred             cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence                             2333333333333 2222211                                          


Q ss_pred             ----------CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCCh--hhhcCCCCCcEEECCCCCCcc-c
Q psy12291        186 ----------DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIET-I  252 (404)
Q Consensus       186 ----------~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~-~  252 (404)
                                ..+++|++|++++|.++...+..+..+++|++|++++|.+..++.  ..+..+++|++|++++|.+.. +
T Consensus       340 ~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  419 (562)
T 3a79_B          340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA  419 (562)
T ss_dssp             SSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred             CCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence                      556778888888888887667778888888888888888887653  457788888888888888887 7


Q ss_pred             CcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCC
Q psy12291        253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL  332 (404)
Q Consensus       253 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  332 (404)
                      +...+..+++|+.|++++|.+++..+..+.  ++|++|++++|+++.++...+ .+++|++|++++|+++.++...+..+
T Consensus       420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l  496 (562)
T 3a79_B          420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRL  496 (562)
T ss_dssp             SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred             ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcC
Confidence            776777888888888888888754433322  699999999999998877666 89999999999999999988778899


Q ss_pred             CCCcEEEccCCccccccCcHHHHH-HHHhccCccc-------CCCCeeCCCCCCCCCcccCCCCcCCC
Q psy12291        333 PNLITLKLAKNPWHCDCAILYMAR-WLRANRRKVW-------DSKPTCRGPGNLGGKSVEDMSFDDLC  392 (404)
Q Consensus       333 ~~L~~l~l~~Np~~C~c~~~~~~~-~~~~~~~~~~-------~~~~~C~~p~~l~~~~l~~~~~~~~C  392 (404)
                      ++|+.|++++|||.|+|++.|+.+ |.......+.       ....+|++    +|+++.++...+.|
T Consensus       497 ~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~g~~l~~~~c~~~~  560 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG----SGKPVRSIICPTLV  560 (562)
T ss_dssp             TTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS----SCCCTTTCCCC---
T ss_pred             CCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC----CCcEeeeecCCCCC
Confidence            999999999999999999999976 9877665543       23678988    78999988655544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.3e-44  Score=359.18  Aligned_cols=374  Identities=24%  Similarity=0.334  Sum_probs=235.1

Q ss_pred             CceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc---------ccCcccccCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS---------ELPGKLFISTI   93 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~---------~~~~~~~~~~~   93 (404)
                      .+.++..++.++.++... ....++++|++++|.+..+.+..|.++++|+.|+++++...         .+....|..++
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~  329 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK  329 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred             CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence            444555555554444321 12234555555555555444444444444444444433211         12222345555


Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCC----------------------------CCCcCCCccCCCCCCCCE
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN----------------------------AIESLPANVFHDLISLEE  145 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n----------------------------~l~~~~~~~~~~l~~L~~  145 (404)
                      +|++|++++|.+..+++..|.++++|++|++++|                            .++.+.+..|..+++|+.
T Consensus       330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  409 (680)
T 1ziw_A          330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV  409 (680)
T ss_dssp             TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence            6666666666666555555555555555555444                            333333444555556666


Q ss_pred             EECCCCcccc-cccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCc--ccCCCccCCCCCCCEEECCC
Q psy12291        146 LDLSQNVLTS-IQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS--FIRPGLFNYFKHLTFLELSE  222 (404)
Q Consensus       146 L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~  222 (404)
                      |++++|.+.. +....+.++++|++|++++|.+..+.+..|..+++|+.|++++|.+.  ...+..+..+++|++|++++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            6666665543 33345555666666666666666555556666666666666666654  33456678889999999999


Q ss_pred             CcCCCCChhhhcCCCCCcEEECCCCCCcccCc--------ccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccc
Q psy12291        223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPA--------GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN  294 (404)
Q Consensus       223 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  294 (404)
                      |.+..+++..+..+++|++|++++|.+..++.        ..+..+++|+.|++++|.++.++...|.++++|++|++++
T Consensus       490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~  569 (680)
T 1ziw_A          490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL  569 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence            99999888889999999999999999887633        2367889999999999999999888899999999999999


Q ss_pred             ccccccCccccCCCCCCcEEeCCCCCCcccCccccc-CCCCCcEEEccCCccccccCc-HHHHHHHHhccCcccC--CCC
Q psy12291        295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS-LLPNLITLKLAKNPWHCDCAI-LYMARWLRANRRKVWD--SKP  370 (404)
Q Consensus       295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~~Np~~C~c~~-~~~~~~~~~~~~~~~~--~~~  370 (404)
                      |+++.+++..|..+++|+.|++++|+++++++..+. .+++|+.+++++|||.|||+. .||..|+......+.+  ..+
T Consensus       570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~  649 (680)
T 1ziw_A          570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY  649 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------
T ss_pred             CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCc
Confidence            999999999999999999999999999999988777 789999999999999999996 8999998766554433  367


Q ss_pred             eeCCCCCCCCCcccCCCCcCCCCcccc
Q psy12291        371 TCRGPGNLGGKSVEDMSFDDLCEGQWA  397 (404)
Q Consensus       371 ~C~~p~~l~~~~l~~~~~~~~C~~~~~  397 (404)
                      +|++|+.++|+++.+++....|+.+..
T Consensus       650 ~C~~p~~~~g~~l~~~~~~~~~~~~~~  676 (680)
T 1ziw_A          650 LCNTPPHYHGFPVRLFDTSSCKDSAHH  676 (680)
T ss_dssp             ---------------------------
T ss_pred             EECCchHHCCCcccccChhhcCCCccC
Confidence            999999999999999998876554443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=334.31  Aligned_cols=312  Identities=27%  Similarity=0.541  Sum_probs=227.1

Q ss_pred             CCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccc
Q psy12291         10 WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLF   89 (404)
Q Consensus        10 w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~   89 (404)
                      ....||..|.|......++|.+.+++.+|..  ++.+++.|++++|++..+.+..|.++++|++|+|++|.+..++...|
T Consensus        31 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~  108 (440)
T 3zyj_A           31 SAQTCPSVCSCSNQFSKVICVRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF  108 (440)
T ss_dssp             --CCCCSSSEECTTSCEEECCSCCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG
T ss_pred             ccccCCCCCEeCCCCCEEEeCCCCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc
Confidence            4457899999998889999999999999986  77889999999999988888888888888888888888888887777


Q ss_pred             cCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcE
Q psy12291         90 ISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKR  169 (404)
Q Consensus        90 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~  169 (404)
                      ..+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|                  
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~------------------  170 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL------------------  170 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC------------------
T ss_pred             cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC------------------
Confidence            88888888888888877777766666677777776666666655555555555555554432                  


Q ss_pred             EeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCC
Q psy12291        170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI  249 (404)
Q Consensus       170 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  249 (404)
                           +.+..++...|..+++|++|+++                                                +|.+
T Consensus       171 -----~~l~~i~~~~~~~l~~L~~L~L~------------------------------------------------~n~l  197 (440)
T 3zyj_A          171 -----KRLSYISEGAFEGLSNLRYLNLA------------------------------------------------MCNL  197 (440)
T ss_dssp             -----TTCCEECTTTTTTCSSCCEEECT------------------------------------------------TSCC
T ss_pred             -----CCcceeCcchhhcccccCeecCC------------------------------------------------CCcC
Confidence                 11222222222323333333333                                                2222


Q ss_pred             cccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccc
Q psy12291        250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL  329 (404)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  329 (404)
                      ..++.  +..+++|+.|+|++|.++.+.+..|.++++|++|++++|+++.+.+..|..+++|+.|+|++|+++.++...+
T Consensus       198 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          198 REIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             SSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             ccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence            22221  3445566666666666666666667777777777777788877777788888899999999999999888888


Q ss_pred             cCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCccc
Q psy12291        330 SLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQW  396 (404)
Q Consensus       330 ~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~~  396 (404)
                      ..+++|+.|+|++|||.|||.+.|+..|++...........+|++|+.++|+.+.+++...+ |..+.
T Consensus       276 ~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P~  343 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPV  343 (440)
T ss_dssp             SSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCCCCC
T ss_pred             ccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCCCCc
Confidence            99999999999999999999999999999876443333468899999999999999987776 86543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-43  Score=344.28  Aligned_cols=357  Identities=29%  Similarity=0.427  Sum_probs=281.7

Q ss_pred             CceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCC
Q psy12291         17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS   96 (404)
Q Consensus        17 ~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~   96 (404)
                      .|.|......++|.+.+++.+|..  +|.++++|++++|.++.+.+.+|.++++|++|++++|++.++++..|.++++|+
T Consensus         2 ~c~~~~~~~~~~c~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~   79 (570)
T 2z63_A            2 PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS   79 (570)
T ss_dssp             CSEEEETTTEEECCSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CccccCCCcEEEeCCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCC
Confidence            577877788999999999999985  788999999999999999888999999999999999999999988899999999


Q ss_pred             EEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCC
Q psy12291         97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSN  175 (404)
Q Consensus        97 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~  175 (404)
                      +|++++|.++.+++..|.++++|++|++++|.++.++...+.++++|++|++++|.+..+. +..+.++++|++|++++|
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A           80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred             EEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence            9999999999988878888999999999998888887766778888888888888777643 456666777777777666


Q ss_pred             CCCCCCCCc-----------------------------------------------------------------------
Q psy12291        176 RINQLPPGI-----------------------------------------------------------------------  184 (404)
Q Consensus       176 ~l~~~~~~~-----------------------------------------------------------------------  184 (404)
                      .++.+++..                                                                       
T Consensus       160 ~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence            543321110                                                                       


Q ss_pred             --------------------------------------c-----------------------------------------
Q psy12291        185 --------------------------------------F-----------------------------------------  185 (404)
Q Consensus       185 --------------------------------------~-----------------------------------------  185 (404)
                                                            +                                         
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l  319 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF  319 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSC
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccccc
Confidence                                                  0                                         


Q ss_pred             ------------------------CCCCCCCeEecCCCcCcccC--CCc-----------------------cCCCCCCC
Q psy12291        186 ------------------------DDLKYLDFLSLRNNRLSFIR--PGL-----------------------FNYFKHLT  216 (404)
Q Consensus       186 ------------------------~~l~~L~~L~l~~~~~~~~~--~~~-----------------------~~~l~~L~  216 (404)
                                              ..+++|++|++++|.++...  +..                       +..+++|+
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~  399 (570)
T 2z63_A          320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE  399 (570)
T ss_dssp             CBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCC
Confidence                                    11233444444444333221  111                       33445555


Q ss_pred             EEECCCCcCCCCCh-hhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcc-ccccccccCCCCCCeeeccc
Q psy12291        217 FLELSENWISSLNG-DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ-ELHAGTFAGLTNLTALFLNN  294 (404)
Q Consensus       217 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~  294 (404)
                      .|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. ...+..+..+++|++|++++
T Consensus       400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~  479 (570)
T 2z63_A          400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  479 (570)
T ss_dssp             EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence            55665555555433 35667788888888888887777667888899999999999887 33456788899999999999


Q ss_pred             ccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHH-HHHHhccCcccCCCCeeC
Q psy12291        295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA-RWLRANRRKVWDSKPTCR  373 (404)
Q Consensus       295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~-~~~~~~~~~~~~~~~~C~  373 (404)
                      |+++.+.+..+..+++|++|++++|+++++++..+..+++|+.|++++||+.|+|+..|+. .|+......+.+.. .|+
T Consensus       480 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~  558 (570)
T 2z63_A          480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCS  558 (570)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBT
T ss_pred             CccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhC
Confidence            9999998889999999999999999999999888999999999999999999999999888 99998766655444 999


Q ss_pred             CCC
Q psy12291        374 GPG  376 (404)
Q Consensus       374 ~p~  376 (404)
                      +|+
T Consensus       559 ~~~  561 (570)
T 2z63_A          559 GSG  561 (570)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            983

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=100.00  E-value=7.2e-43  Score=331.29  Aligned_cols=312  Identities=29%  Similarity=0.543  Sum_probs=230.1

Q ss_pred             CCCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCccc
Q psy12291          9 SWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKL   88 (404)
Q Consensus         9 ~w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~   88 (404)
                      ++...||..|.|......++|.+.+++.+|..  ++.++++|++++|++..+.+..|.++++|+.|++++|.+..+++..
T Consensus        41 ~~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  118 (452)
T 3zyi_A           41 AGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA  118 (452)
T ss_dssp             ---CCCCTTSEECSSSCEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CCcCCCCCCCEECCCCcEEEECCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh
Confidence            34558899999998889999999999999976  7788999999999999888888888888888888888888888777


Q ss_pred             ccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCc
Q psy12291         89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK  168 (404)
Q Consensus        89 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~  168 (404)
                      |.++++|++|++++|.++.+++..|.++++|++|++++|.++.++...|..+++|+.|++++|                 
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~-----------------  181 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------  181 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC-----------------
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC-----------------
Confidence            888888888888888888887777777777777777777777666655666666666655542                 


Q ss_pred             EEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCC
Q psy12291        169 RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY  248 (404)
Q Consensus       169 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  248 (404)
                            +.+..++...|..+++|++|++++|.                                                
T Consensus       182 ------~~l~~i~~~~~~~l~~L~~L~L~~n~------------------------------------------------  207 (452)
T 3zyi_A          182 ------KKLEYISEGAFEGLFNLKYLNLGMCN------------------------------------------------  207 (452)
T ss_dssp             ------TTCCEECTTTTTTCTTCCEEECTTSC------------------------------------------------
T ss_pred             ------CCccccChhhccCCCCCCEEECCCCc------------------------------------------------
Confidence                  12222222223333333333333332                                                


Q ss_pred             CcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccc
Q psy12291        249 IETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS  328 (404)
Q Consensus       249 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  328 (404)
                      +..++.  +..+++|+.|++++|.++.+.+..|.++++|++|++++|+++.+.+..|..+++|+.|+|++|+++.++...
T Consensus       208 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  285 (452)
T 3zyi_A          208 IKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL  285 (452)
T ss_dssp             CSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred             cccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence            222211  334455556666666666665666666777777777777777777777788888888888888888888888


Q ss_pred             ccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCcc
Q psy12291        329 LSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQ  395 (404)
Q Consensus       329 ~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~  395 (404)
                      +..+++|+.|++++|||.|||.+.|+..|+++..........+|++|+.++|+.+.+++...+ |..+
T Consensus       286 ~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~P  353 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAP  353 (452)
T ss_dssp             STTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCCC
T ss_pred             hccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccCc
Confidence            889999999999999999999999999999876443323367999999999999999987765 8654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=354.01  Aligned_cols=369  Identities=26%  Similarity=0.394  Sum_probs=225.5

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCC-cCcccCcccccCCCCCCEEeCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN-HLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      ...++|.+.+++.+|.   .|.++++|++++|.|+.+.+.+|.++++|++|++++| .+..+++..|.++++|++|++++
T Consensus         6 ~~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             TEEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             ceEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            4688999999999986   7778999999998888877666777777777777666 34455555566666666666666


Q ss_pred             CCCcccCccccCCCCCCcEEEccCCCCCcC--CCccCCCCCCCCEEECCCCccccccc-ccccCCccCcEEeccCC----
Q psy12291        103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESL--PANVFHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSN----  175 (404)
Q Consensus       103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~----  175 (404)
                      |.+..+++..|.++++|++|++++|.++..  ....|.++++|++|++++|.+....+ ..|+++++|++|++++|    
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            666665555555555566655555555431  12224444444444444444433322 12333333333333333    


Q ss_pred             --------------------------------------------------------------------------------
Q psy12291        176 --------------------------------------------------------------------------------  175 (404)
Q Consensus       176 --------------------------------------------------------------------------------  175 (404)
                                                                                                      
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence                                                                                            


Q ss_pred             ----------------------------------CCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECC
Q psy12291        176 ----------------------------------RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELS  221 (404)
Q Consensus       176 ----------------------------------~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  221 (404)
                                                        .+..+++..|..+++|+.|++++|.++.+.+..+..+++|++|+++
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  322 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS  322 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence                                              2222222333344444455555554444444445555555555555


Q ss_pred             CCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcccc-------------------------
Q psy12291        222 ENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL-------------------------  276 (404)
Q Consensus       222 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------------  276 (404)
                      +|.+..+.+..+..+++|+.|++++|.+..++...|..+++|+.|++++|.++.+                         
T Consensus       323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~  402 (844)
T 3j0a_A          323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT  402 (844)
T ss_dssp             SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTT
T ss_pred             CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccc
Confidence            5555554444455555555555555555444444444444444444444433221                         


Q ss_pred             ---------------------------------------c------------------------------cccccCCCCC
Q psy12291        277 ---------------------------------------H------------------------------AGTFAGLTNL  287 (404)
Q Consensus       277 ---------------------------------------~------------------------------~~~~~~~~~L  287 (404)
                                                             .                              +..|.++++|
T Consensus       403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L  482 (844)
T 3j0a_A          403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL  482 (844)
T ss_dssp             CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred             cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence                                                   1                              0124455677


Q ss_pred             CeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccccc-------------------CCCCCcEEEccCCccccc
Q psy12291        288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS-------------------LLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       288 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~l~~L~~l~l~~Np~~C~  348 (404)
                      ++|+|++|+++.+++..|..+++|+.|+|++|+++++++..+.                   .+++|+.+++++|||.|+
T Consensus       483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICE  562 (844)
T ss_dssp             ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCCCS
T ss_pred             cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecCCCcccc
Confidence            7777777777777777788888899999999888887765432                   245788899999999999


Q ss_pred             cCcHHHHHHHHhccCcccC--CCCeeCCCCCCCCCcccCCCCcCCCCccc
Q psy12291        349 CAILYMARWLRANRRKVWD--SKPTCRGPGNLGGKSVEDMSFDDLCEGQW  396 (404)
Q Consensus       349 c~~~~~~~~~~~~~~~~~~--~~~~C~~p~~l~~~~l~~~~~~~~C~~~~  396 (404)
                      |++.||..|+......+..  ...+|++|+.++|.++.+++. ..|....
T Consensus       563 c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~-~~C~~~~  611 (844)
T 3j0a_A          563 CELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST-EGCDEEE  611 (844)
T ss_dssp             SSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCC-CCC----
T ss_pred             cccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCcc-ccCCchh
Confidence            9999999999876655433  368999999999999999876 4587543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3e-42  Score=333.30  Aligned_cols=350  Identities=23%  Similarity=0.330  Sum_probs=268.3

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN  103 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  103 (404)
                      .+.++|++++++.+|..  ++.++++|++++|.+..+.+.+|.++++|++|++++|+++++.+..|..+++|++|++++|
T Consensus         2 ~~~l~ls~n~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            2 EFLVDRSKNGLIHVPKD--LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CCEEECTTSCCSSCCCS--CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             cceEecCCCCccccccc--ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            36799999999999976  5589999999999999998889999999999999999999998888899999999999999


Q ss_pred             CCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCcccccc-------------------------
Q psy12291        104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQ-------------------------  157 (404)
Q Consensus       104 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~-------------------------  157 (404)
                      .++.+|..   .+++|++|++++|.++.++ +..|+++++|++|++++|.+....                         
T Consensus        80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B           80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred             ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc
Confidence            99988875   7899999999999998754 356788888888888887764311                         


Q ss_pred             cccccC--------------------------C-----------------------------------------------
Q psy12291        158 YGTFSG--------------------------M-----------------------------------------------  164 (404)
Q Consensus       158 ~~~l~~--------------------------l-----------------------------------------------  164 (404)
                      +..+..                          +                                               
T Consensus       157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~  236 (520)
T 2z7x_B          157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS  236 (520)
T ss_dssp             TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred             cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence            111111                          0                                               


Q ss_pred             ----------ccCcEEeccCCCCC-CCCCCc-------------------------------------------------
Q psy12291        165 ----------YSLKRLKLQSNRIN-QLPPGI-------------------------------------------------  184 (404)
Q Consensus       165 ----------~~L~~L~l~~~~l~-~~~~~~-------------------------------------------------  184 (404)
                                ++|++|++++|.++ .++...                                                 
T Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~  316 (520)
T 2z7x_B          237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH  316 (520)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence                      13444444444433 222211                                                 


Q ss_pred             ---cCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCCh--hhhcCCCCCcEEECCCCCCcc-cCccccc
Q psy12291        185 ---FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIET-IPAGSFA  258 (404)
Q Consensus       185 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~-~~~~~~~  258 (404)
                         +..+++|++|++++|.++...+..+..+++|++|++++|.+..++.  ..+..+++|++|++++|.+.. ++...+.
T Consensus       317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence               1455667777777777776556667777777777777777775432  456777777788887777776 6665567


Q ss_pred             CCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEE
Q psy12291        259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL  338 (404)
Q Consensus       259 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  338 (404)
                      .+++|+.|++++|.+++..+..+.  ++|++|++++|+++.++...+ .+++|++|++++|+++.++...+..+++|+.|
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence            777888888888877654433332  689999999999998866555 88999999999999999988778899999999


Q ss_pred             EccCCccccccCcHHH-HHHHHhccCcccCCCCeeCCCCCCCCCcccCC
Q psy12291        339 KLAKNPWHCDCAILYM-ARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM  386 (404)
Q Consensus       339 ~l~~Np~~C~c~~~~~-~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~  386 (404)
                      ++++|||.|+|.+.|+ ..|+...... .....+|++|    |+++.++
T Consensus       474 ~l~~N~~~c~c~~~~~~~~~~~~~~~~-~~~~~~C~~p----~~~~~~~  517 (520)
T 2z7x_B          474 WLHTNPWDCSCPRIDYLSRWLNKNSQK-EQGSAKCSGS----GKPVRSI  517 (520)
T ss_dssp             ECCSSCBCCCHHHHHHHHHHHHHTTTT-EESCCBBTTT----CCBGGGC
T ss_pred             ECcCCCCcccCCchHHHHHHHHhcccc-CCCCCCcCCc----ccchhhh
Confidence            9999999999999999 8999887654 2357899999    4455544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-41  Score=331.40  Aligned_cols=350  Identities=24%  Similarity=0.409  Sum_probs=244.8

Q ss_pred             EEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCc
Q psy12291         27 LSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK  106 (404)
Q Consensus        27 ~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~  106 (404)
                      ++|.+++++.+|..  ++..+++|++++|.++.+.+.+|.++++|++|++++|++..+++..|..+++|++|++++|.++
T Consensus        10 c~~~~~~l~~ip~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~   87 (549)
T 2z81_A           10 CDGRSRSFTSIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS   87 (549)
T ss_dssp             EECTTSCCSSCCSC--CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             EECCCCcccccccc--CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence            46677788888875  5567888888888888877777888888888888888888887777788888888888888888


Q ss_pred             ccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCc-ccccccccccCCccCcEEeccCCCCCCCCCCc
Q psy12291        107 TLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI  184 (404)
Q Consensus       107 ~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  184 (404)
                      .+++..|.++++|++|++++|.++.++ +..+.++++|++|++++|. +..+.+..+.++++|++|++++|.+++..+..
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  167 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS  167 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence            887777778888888888888777543 2345667777777777665 44444344444444444444444433221111


Q ss_pred             c-------------------------------------------------------------------------------
Q psy12291        185 F-------------------------------------------------------------------------------  185 (404)
Q Consensus       185 ~-------------------------------------------------------------------------------  185 (404)
                      +                                                                               
T Consensus       168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  247 (549)
T 2z81_A          168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL  247 (549)
T ss_dssp             TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred             hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence            1                                                                               


Q ss_pred             --------------------------------------------------------------------------------
Q psy12291        186 --------------------------------------------------------------------------------  185 (404)
Q Consensus       186 --------------------------------------------------------------------------------  185 (404)
                                                                                                      
T Consensus       248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~  327 (549)
T 2z81_A          248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC  327 (549)
T ss_dssp             GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH
T ss_pred             hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH
Confidence                                                                                            


Q ss_pred             ---CCCCCCCeEecCCCcCcccC---CCccCCCCCCCEEECCCCcCCCCCh--hhhcCCCCCcEEECCCCCCcccCcccc
Q psy12291        186 ---DDLKYLDFLSLRNNRLSFIR---PGLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIETIPAGSF  257 (404)
Q Consensus       186 ---~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~l~~~~~~~~  257 (404)
                         ..+++|++|++++|.+.+..   ...+..+++|++|++++|.+..++.  ..+..+++|++|++++|.+..+|. .+
T Consensus       328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~  406 (549)
T 2z81_A          328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SC  406 (549)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CC
T ss_pred             HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hh
Confidence               12344444555554444321   1124455666666666666665542  346677778888888887777765 45


Q ss_pred             cCCCCCcEEECcCCCcccccccc-----------------ccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCC
Q psy12291        258 ANLQSLEKLFLYSNNIQELHAGT-----------------FAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNK  320 (404)
Q Consensus       258 ~~l~~L~~L~L~~n~l~~~~~~~-----------------~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  320 (404)
                      ..+++|+.|++++|.++.++...                 +..+++|++|++++|+++.++..  ..+++|++|++++|+
T Consensus       407 ~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~  484 (549)
T 2z81_A          407 QWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQ  484 (549)
T ss_dssp             CCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSC
T ss_pred             cccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCc
Confidence            66677777777777766554321                 12578899999999999887653  457899999999999


Q ss_pred             CcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCC
Q psy12291        321 LQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM  386 (404)
Q Consensus       321 l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~  386 (404)
                      ++++++..+..+++|+.|++++|||.|+|+ +.|+.+|+...... ......|++|    |++++++
T Consensus       485 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~-~~~~~~C~~~----~~~~~~~  546 (549)
T 2z81_A          485 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK-EQGSAKCSGS----GKPVRSI  546 (549)
T ss_dssp             CCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTT-EESCCBBTTT----CCBGGGC
T ss_pred             cCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccc-cCCCCeECCC----Ccchhhc
Confidence            999999889999999999999999999999 56777899877654 3357899987    5666653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=4e-40  Score=324.33  Aligned_cols=331  Identities=27%  Similarity=0.333  Sum_probs=247.1

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST   92 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   92 (404)
                      .|+..|.|......++|.+.+++.+|..  +|..+++|++++|.++.+.+.+|.++++|++|++++|++..+.+..|.++
T Consensus         3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   80 (606)
T 3t6q_A            3 SSDQKCIEKEVNKTYNCENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ   80 (606)
T ss_dssp             ---CCCEEEETTTEEECTTSCCSSCCTT--SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC
T ss_pred             cccCceecccCCceEECCCCCcccCcCC--CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCc
Confidence            4577899988888999999999999986  78899999999999999999999999999999999999999988889999


Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEec
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKL  172 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l  172 (404)
                      ++|++|++++|.+..+++..|.++++|++|++++|.++.+++..+.++++|++|++++|.+..+....+..+++|++|++
T Consensus        81 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  160 (606)
T 3t6q_A           81 HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF  160 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEEC
T ss_pred             cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEc
Confidence            99999999999999988878999999999999999999887777888999999999999988876556666888888888


Q ss_pred             cCCCCCCCCCCccCCCCCCC--eEecCCCcCcccCC--------------------------------------------
Q psy12291        173 QSNRINQLPPGIFDDLKYLD--FLSLRNNRLSFIRP--------------------------------------------  206 (404)
Q Consensus       173 ~~~~l~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~--------------------------------------------  206 (404)
                      ++|.++.+++..|..+++|+  .|++++|.+..+.+                                            
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~  240 (606)
T 3t6q_A          161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD  240 (606)
T ss_dssp             CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCC
T ss_pred             ccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccc
Confidence            88888877666666667666  66666666554433                                            


Q ss_pred             -------------------------------CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc
Q psy12291        207 -------------------------------GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG  255 (404)
Q Consensus       207 -------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  255 (404)
                                                     ..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+++.
T Consensus       241 ~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~~~  319 (606)
T 3t6q_A          241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQI  319 (606)
T ss_dssp             CCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-SSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred             cccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC-hhhcccccCCEEECccCCcCcCchh
Confidence                                           33444555555555555555443 2345555555555555555555444


Q ss_pred             cccCCCCCcEEECcCCCcc-ccccccccCCCCCCeeecccccccccC--ccccCCCCCCcEEeCCCCCCcccCcccccCC
Q psy12291        256 SFANLQSLEKLFLYSNNIQ-ELHAGTFAGLTNLTALFLNNNLLRYLD--TKAFEPMLHLKKLQLDSNKLQYLATDSLSLL  332 (404)
Q Consensus       256 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  332 (404)
                      .+..+++|+.|++++|.+. .++...+..+++|++|++++|+++.+.  +..+..+++|++|++++|++.++++..+..+
T Consensus       320 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  399 (606)
T 3t6q_A          320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC  399 (606)
T ss_dssp             CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred             hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence            4555555566666555554 344444566666666666666666554  4456666677777777777766666666667


Q ss_pred             CCCcEEEccCCccc
Q psy12291        333 PNLITLKLAKNPWH  346 (404)
Q Consensus       333 ~~L~~l~l~~Np~~  346 (404)
                      ++|+.|++++|.+.
T Consensus       400 ~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          400 PQLELLDLAFTRLK  413 (606)
T ss_dssp             TTCSEEECTTCCEE
T ss_pred             ccCCeEECCCCcCC
Confidence            77777777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=100.00  E-value=3.2e-40  Score=297.19  Aligned_cols=298  Identities=25%  Similarity=0.421  Sum_probs=208.9

Q ss_pred             CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccC--cccccC
Q psy12291         14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP--GKLFIS   91 (404)
Q Consensus        14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~   91 (404)
                      ||..|.|.  ...++|.+.+++.+|..  .+.++++|++++|.++.++...|.++++|++|++++|.+..+.  +..+..
T Consensus         1 CP~~C~C~--~~~l~c~~~~l~~ip~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~   76 (306)
T 2z66_A            1 CPSRCSCS--GTEIRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG   76 (306)
T ss_dssp             CCTTCEEE--TTEEECCSSCCSSCCSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS
T ss_pred             CcCCCeeC--CCEEEcCCCCcccCCCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc
Confidence            78999997  46899999999999986  6778999999999999888877889999999999999887553  234456


Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEe
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK  171 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  171 (404)
                      +++|++|++++|.+..++.. +..+++|++|++++|.++.++..                       ..+..+++|++|+
T Consensus        77 ~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~-----------------------~~~~~l~~L~~L~  132 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----------------------SVFLSLRNLIYLD  132 (306)
T ss_dssp             CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTT-----------------------TTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccc-----------------------hhhhhccCCCEEE
Confidence            78888888888888777654 55666777777766666554430                       2334444555555


Q ss_pred             ccCCCCCCCCCCccCCCCCCCeEecCCCcCcc-cCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291        172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF-IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE  250 (404)
Q Consensus       172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  250 (404)
                      +++|.+..+.+..+..+++|++|++++|.+.. ..+                        .                   
T Consensus       133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~-------------------  169 (306)
T 2z66_A          133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP------------------------D-------------------  169 (306)
T ss_dssp             CTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC------------------------S-------------------
T ss_pred             CCCCcCCccchhhcccCcCCCEEECCCCccccccch------------------------h-------------------
Confidence            55555444443334444444445444444332 111                        1                   


Q ss_pred             ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccccc
Q psy12291        251 TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS  330 (404)
Q Consensus       251 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  330 (404)
                           .+..+++|+.|++++|.++.+.+..+..+++|++|++++|+++.++...+..+++|+.|++++|++++..+..+.
T Consensus       170 -----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          170 -----IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             -----CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             -----HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence                 223334444444444444444444455555666666666666666555666777888888888888887777777


Q ss_pred             CCC-CCcEEEccCCccccccCcHHHHHHHHhccCcccC-CCCeeCCCCCCCCCcccCCC
Q psy12291        331 LLP-NLITLKLAKNPWHCDCAILYMARWLRANRRKVWD-SKPTCRGPGNLGGKSVEDMS  387 (404)
Q Consensus       331 ~l~-~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~-~~~~C~~p~~l~~~~l~~~~  387 (404)
                      .++ +|+.|++++||+.|+|...|+.+|++..+..... ...+|+.|+.++|+++.+++
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~  303 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN  303 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCC
T ss_pred             hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeec
Confidence            774 8999999999999999999999999987655443 37899999999999999884

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7.4e-40  Score=304.90  Aligned_cols=321  Identities=25%  Similarity=0.354  Sum_probs=245.9

Q ss_pred             CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL  124 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  124 (404)
                      .+++.|+++++.++.++...|.++++|++|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            46778888888887777777777788888888888888777777777888888888888887777777777888888888


Q ss_pred             cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCC----------------C
Q psy12291        125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD----------------L  188 (404)
Q Consensus       125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~----------------l  188 (404)
                      ++|.++.++...|..+++|++|++++|.+..+.+..+.++++|++|++++|.++.++...+..                .
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~  204 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  204 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence            888888777777777778888888888777777777777778888888887777664322211                2


Q ss_pred             CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEEC
Q psy12291        189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL  268 (404)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L  268 (404)
                      ++|+.|++++|.+..++.   ...++|+.|++++|.+...  ..+..+++|++|++++|.+..+.+..+..+++|+.|++
T Consensus       205 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             SSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence            345555666665555432   2346899999999988876  46889999999999999999987778999999999999


Q ss_pred             cCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291        269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~  348 (404)
                      ++|.++.++. .+..+++|++|++++|+++.++.. +..+++|+.|++++|+++.++   +..+++|+.|++++|||.|+
T Consensus       280 ~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          280 SNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence            9999998854 456789999999999999988543 567889999999999999885   66789999999999999999


Q ss_pred             cCcHHHHHHHHhccCcccCCCCeeCCCCCC
Q psy12291        349 CAILYMARWLRANRRKVWDSKPTCRGPGNL  378 (404)
Q Consensus       349 c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l  378 (404)
                      |...++..|.+..   +......|..|...
T Consensus       355 ~~~~~~~~~~~~~---~~~~~~~c~~~~~~  381 (390)
T 3o6n_A          355 SLRALFRNVARPA---VDDADQHCKIDYQL  381 (390)
T ss_dssp             HHHHHTTTCCTTT---BCCCCSCCCTTCEE
T ss_pred             hHHHHHHHHHhhc---ccccCceecccccc
Confidence            8655444333221   22235667765443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=100.00  E-value=2.6e-38  Score=281.75  Aligned_cols=279  Identities=33%  Similarity=0.526  Sum_probs=189.0

Q ss_pred             CCCCCceecCCC-ceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291         13 CCEGPCRCRPEI-HTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS   91 (404)
Q Consensus        13 ~~~~~c~c~~~~-~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~   91 (404)
                      .||..|.|..+. ..++|.+++++.+|..  .+.++++|++++|.++.+.+..|.++++|++|++++|.+.++.+..|..
T Consensus         1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCceECCCCCeEEEcCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            389999998765 7899999999999975  6778888888888888887777777778888888777777776666667


Q ss_pred             CCCCCEEeCCCCC-CcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291         92 TINLSTMDLSQNL-IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL  170 (404)
Q Consensus        92 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  170 (404)
                      +++|++|++++|. ++.+++..|..++                        +|++|++++|.+..+.+..+.++++|++|
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLG------------------------RLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCT------------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCc------------------------CCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            7777777777765 6655544444444                        44444444444333222223333333333


Q ss_pred             eccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291        171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE  250 (404)
Q Consensus       171 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  250 (404)
                      ++++|.++.+++                                                ..+..+++|++|++++|.+.
T Consensus       135 ~l~~n~l~~~~~------------------------------------------------~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          135 YLQDNALQALPD------------------------------------------------DTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             ECCSSCCCCCCT------------------------------------------------TTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcccccCH------------------------------------------------hHhccCCCccEEECCCCccc
Confidence            333333222221                                                11222333333444443333


Q ss_pred             ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccccc
Q psy12291        251 TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLS  330 (404)
Q Consensus       251 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  330 (404)
                      .++.                        ..|..+++|++|++++|+++.+.+..+..+++|+.|++++|.++++++..+.
T Consensus       167 ~~~~------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  222 (285)
T 1ozn_A          167 SVPE------------------------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA  222 (285)
T ss_dssp             EECT------------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred             ccCH------------------------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence            3333                        3344445555555555555555556666777888888888888888877788


Q ss_pred             CCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC
Q psy12291        331 LLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL  391 (404)
Q Consensus       331 ~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~  391 (404)
                      .+++|+.|++++|||.|+|...|+..|++.....  .....|+.|+.++|+.+.++...++
T Consensus       223 ~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~--~~~~~c~~p~~l~g~~l~~l~~~~l  281 (285)
T 1ozn_A          223 PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS--SSEVPCSLPQRLAGRDLKRLAANDL  281 (285)
T ss_dssp             TCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSE--ECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             cCcccCEEeccCCCccCCCCcHHHHHHHHhcccc--cCccccCCchHhCCcChhhcCHHHh
Confidence            8999999999999999999999999999886532  3578899999999999999988776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=7.3e-38  Score=284.80  Aligned_cols=308  Identities=25%  Similarity=0.417  Sum_probs=228.5

Q ss_pred             CCCCCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCc
Q psy12291          7 EDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG   86 (404)
Q Consensus         7 ~~~w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~   86 (404)
                      ...|...||..|.|.  .+.++|.+.+++.+|..  .+..+++|++++|.++.+.+..|.++++|++|++++|.+..+.+
T Consensus        18 i~~~~~~cp~~c~c~--l~~l~~~~~~l~~lp~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (330)
T 1xku_A           18 IEPMGPVCPFRCQCH--LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP   93 (330)
T ss_dssp             ----CCCCCTTCEEE--TTEEECTTSCCCSCCCS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred             cccccCCCCCCCcCC--CeEEEecCCCccccCcc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH
Confidence            556888899999885  68899999999999976  67799999999999999988889999999999999999999988


Q ss_pred             ccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc--cccccccCC
Q psy12291         87 KLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS--IQYGTFSGM  164 (404)
Q Consensus        87 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~l  164 (404)
                      ..|..+++|++|++++|.++.+|...+   ++|++|++++|.++.++...|.++++|+.|++++|.+..  ..+..+.++
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  170 (330)
T 1xku_A           94 GAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM  170 (330)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC
T ss_pred             HHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC
Confidence            888999999999999999999887644   689999999999998888878889999999999998864  556677888


Q ss_pred             ccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEEC
Q psy12291        165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL  244 (404)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  244 (404)
                      ++|++|++++|.++.++...+   ++|++|++++|.++.+.+..+..+++|++|++++|.+..+++..+..+++|++|++
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  247 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  247 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             CCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence            888999998888887776442   67777777777777766666677777777777777766666556666666777777


Q ss_pred             CCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcc-
Q psy12291        245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY-  323 (404)
Q Consensus       245 ~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-  323 (404)
                      ++|.+..++. .+..+++|+.|++++|.++.++...|....                  .....+.++.|++++|.+.. 
T Consensus       248 ~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          248 NNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             CSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGG
T ss_pred             CCCcCccCCh-hhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCccccc
Confidence            7666666654 355566666666666666666555443210                  00012455556666665543 


Q ss_pred             -cCcccccCCCCCcEEEccCC
Q psy12291        324 -LATDSLSLLPNLITLKLAKN  343 (404)
Q Consensus       324 -~~~~~~~~l~~L~~l~l~~N  343 (404)
                       +++..+..+++++.+++++|
T Consensus       309 ~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          309 EIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GSCGGGGTTCCCGGGEEC---
T ss_pred             ccCccccccccceeEEEeccc
Confidence             44455555666666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=6.6e-38  Score=285.25  Aligned_cols=302  Identities=25%  Similarity=0.435  Sum_probs=228.6

Q ss_pred             CCCCCCCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccC
Q psy12291          6 KEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELP   85 (404)
Q Consensus         6 ~~~~w~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~   85 (404)
                      ....|...||..|.|.  .+.++|.+++++.+|..  .+.++++|++++|.+..+.+.+|.++++|++|++++|+++.+.
T Consensus        19 lp~~~~~~cp~~c~c~--l~~l~~~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~   94 (332)
T 2ft3_A           19 LPPTYSAMCPFGCHCH--LRVVQCSDLGLKAVPKE--ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH   94 (332)
T ss_dssp             ------CCCCSSCEEE--TTEEECCSSCCSSCCSC--CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCcccCCCCCCCccc--CCEEECCCCCccccCCC--CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC
Confidence            3446777899999885  68899999999999986  5679999999999999998888999999999999999999998


Q ss_pred             cccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc--cccccccC
Q psy12291         86 GKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS--IQYGTFSG  163 (404)
Q Consensus        86 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~l~~  163 (404)
                      +..|..+++|++|++++|.++.+|...+   ++|++|++++|.++.++...|.++++|+.|++++|.+..  ..+..+..
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  171 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG  171 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred             HhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence            8889999999999999999999987654   799999999999999988888899999999999998864  55566777


Q ss_pred             CccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEE
Q psy12291        164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH  243 (404)
Q Consensus       164 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  243 (404)
                      + +|++|++++|.++.++...+   ++|++|++++|.++.+.+..+..+++|++|++++|.+..+++..+..+++|++|+
T Consensus       172 l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  247 (332)
T 2ft3_A          172 L-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH  247 (332)
T ss_dssp             C-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred             C-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence            6 89999999998888776543   6788888888888777767777777777777777777777666677777777777


Q ss_pred             CCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC------CCCCeeeccccccc--ccCccccCCCCCCcEEe
Q psy12291        244 LGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL------TNLTALFLNNNLLR--YLDTKAFEPMLHLKKLQ  315 (404)
Q Consensus       244 l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~  315 (404)
                      +++|.+..++. .+..+++|+.|++++|.++.++...|...      +.|+.|++++|.+.  .+.+..|..+++|+.++
T Consensus       248 L~~N~l~~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~  326 (332)
T 2ft3_A          248 LDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ  326 (332)
T ss_dssp             CCSSCCCBCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred             CCCCcCeecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence            77777776665 35666777777777777776666555432      33444444444443  23333444444444444


Q ss_pred             CCCC
Q psy12291        316 LDSN  319 (404)
Q Consensus       316 l~~n  319 (404)
                      +++|
T Consensus       327 l~~n  330 (332)
T 2ft3_A          327 FGNY  330 (332)
T ss_dssp             C---
T ss_pred             cccc
Confidence            4433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.6e-38  Score=308.96  Aligned_cols=301  Identities=25%  Similarity=0.354  Sum_probs=237.0

Q ss_pred             CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL  124 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  124 (404)
                      .+++.++++++.+..+++..|.++++|+.|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            46778888888887777777777788888888888888777777778888888888888888777777777888888888


Q ss_pred             cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccC----------------CC
Q psy12291        125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD----------------DL  188 (404)
Q Consensus       125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~----------------~l  188 (404)
                      ++|.++.++...|.++++|+.|++++|.+..+.+..|.++++|+.|++++|.++.++...+.                ..
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~  210 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP  210 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence            88888877777777788888888888888777777777788888888888877766532221                12


Q ss_pred             CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEEC
Q psy12291        189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL  268 (404)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L  268 (404)
                      ++|+.|++++|.+..++..   ..++|+.|++++|.+...  ..+..+++|+.|++++|.+..+++..+..+++|+.|+|
T Consensus       211 ~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  285 (597)
T 3oja_B          211 IAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  285 (597)
T ss_dssp             TTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             chhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence            3345555555555544332   235789999999988875  56889999999999999999987778999999999999


Q ss_pred             cCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291        269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~  348 (404)
                      ++|.++.++. .+..+++|++|+|++|.++.++. .+..+++|+.|+|++|.+..++   +..+++|+.|++++|||.|+
T Consensus       286 s~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          286 SNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCCCCc-ccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence            9999999854 45678999999999999998754 4567899999999999999885   56789999999999999999


Q ss_pred             cCcHHHH
Q psy12291        349 CAILYMA  355 (404)
Q Consensus       349 c~~~~~~  355 (404)
                      |...|+.
T Consensus       361 ~~~~~~~  367 (597)
T 3oja_B          361 SLRALFR  367 (597)
T ss_dssp             HHHHHTT
T ss_pred             hHHHHHH
Confidence            8544433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=304.15  Aligned_cols=330  Identities=25%  Similarity=0.299  Sum_probs=293.2

Q ss_pred             CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      ...+.++..++.++.++... ....++++|++++|.+..+.+.+|.++++|++|++++|.+..++...|..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            45789999999999987543 33468999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCC
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL  180 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~  180 (404)
                      ++|.+..+++..|..+++|++|++++|.+..+....|.++++|+.|++++|.+..+....+.++++|+.|++++|.+..+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  191 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI  191 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence            99999999888899999999999999999999888899999999999999999999888899999999999999999999


Q ss_pred             CCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCC
Q psy12291        181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL  260 (404)
Q Consensus       181 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  260 (404)
                      ++..|..+++|+.|++++|......+.......+|+.|++++|.+..++...+..+++|+.|++++|.+..++...+..+
T Consensus       192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (477)
T 2id5_A          192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL  271 (477)
T ss_dssp             CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred             ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence            98889999999999999987655444444455699999999999999998889999999999999999999998889999


Q ss_pred             CCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEc
Q psy12291        261 QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL  340 (404)
Q Consensus       261 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  340 (404)
                      ++|+.|++++|.++.+.+..|.++++|++|++++|+++.++...|..+++|+.|++++|.+..-.. ..........+.+
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~~~~~~~~~~  350 (477)
T 2id5_A          272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWVFRRRWRLNF  350 (477)
T ss_dssp             TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHHHTTTTSSCC
T ss_pred             ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhHHhhhhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999875322 1111223344567


Q ss_pred             cCCccccccCcH
Q psy12291        341 AKNPWHCDCAIL  352 (404)
Q Consensus       341 ~~Np~~C~c~~~  352 (404)
                      .++...|.++..
T Consensus       351 ~~~~~~C~~p~~  362 (477)
T 2id5_A          351 NRQQPTCATPEF  362 (477)
T ss_dssp             TTCCCBEEESGG
T ss_pred             CccCceeCCchH
Confidence            788888987653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.5e-38  Score=312.14  Aligned_cols=323  Identities=29%  Similarity=0.396  Sum_probs=275.5

Q ss_pred             ceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCE
Q psy12291         18 CRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLST   97 (404)
Q Consensus        18 c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~   97 (404)
                      |.|.  ...++|.+.+++.+|..  ++.++++|++++|.++.+.+..|.++++|++|++++|.+.++++..|.++++|++
T Consensus         2 C~~~--~~~~~cs~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~   77 (680)
T 1ziw_A            2 CTVS--HEVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV   77 (680)
T ss_dssp             --CB--SSEEECCSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCE
T ss_pred             ceeE--CCeeECCCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCE
Confidence            5565  46899999999999976  6789999999999999999989999999999999999999999888999999999


Q ss_pred             EeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCC
Q psy12291         98 MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI  177 (404)
Q Consensus        98 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l  177 (404)
                      |++++|.++.+++..|.++++|++|++++|.++.+++..|.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus        78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A           78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             EECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            99999999999998899999999999999999999988899999999999999999988888899999999999999999


Q ss_pred             CCCCCCccC--CCCCCCeEecCCCcCcccCCCccCCC---------------------------CCCCEEECCCCcCCCC
Q psy12291        178 NQLPPGIFD--DLKYLDFLSLRNNRLSFIRPGLFNYF---------------------------KHLTFLELSENWISSL  228 (404)
Q Consensus       178 ~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l---------------------------~~L~~L~l~~~~~~~~  228 (404)
                      +.+++..+.  .+++|+.|++++|.++.+.+..+..+                           ++|+.|++++|.+...
T Consensus       158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~  237 (680)
T 1ziw_A          158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT  237 (680)
T ss_dssp             CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred             cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence            888765443  45889999999998887766655433                           5677788888888777


Q ss_pred             ChhhhcCCCC--CcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccccccc--------
Q psy12291        229 NGDEFSQLTS--LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR--------  298 (404)
Q Consensus       229 ~~~~~~~l~~--L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~--------  298 (404)
                      .+.++..++.  |+.|++++|.+..+++..+..+++|+.|++++|.+..+.+..|.++++|++|++++|...        
T Consensus       238 ~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~l  317 (680)
T 1ziw_A          238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL  317 (680)
T ss_dssp             CTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------C
T ss_pred             ChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccc
Confidence            7777776654  999999999888888777888899999999999888888778888888888888876433        


Q ss_pred             -ccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCc
Q psy12291        299 -YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP  344 (404)
Q Consensus       299 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np  344 (404)
                       .+....|..+++|++|++++|.++++++..+..+++|+.|++++|.
T Consensus       318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             cccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence             3333467778888888888888888887778888888888888775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=290.47  Aligned_cols=321  Identities=22%  Similarity=0.379  Sum_probs=234.7

Q ss_pred             CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCC
Q psy12291         14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI   93 (404)
Q Consensus        14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~   93 (404)
                      ++..|.|+.. ..++|.+++++.+|..  .+.++++|++++|.++.+.+..|.++++|++|++++|+++++++..|..++
T Consensus        24 ~~~~~~C~~~-~~c~~~~~~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           24 NQASLSCDRN-GICKGSSGSLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             ---CCEECTT-SEEECCSTTCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CccCCCCCCC-eEeeCCCCCccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            4567777764 4589999999999986  667899999999999999888899999999999999999998888889999


Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCC-ccCCCCCCCCEEECCCC-cccccccccccCCccCcEEe
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQN-VLTSIQYGTFSGMYSLKRLK  171 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~  171 (404)
                      +|++|++++|.++.+++..|.++++|++|++++|.++.++. ..|..+++|+.|++++| .+..+.+..+.++++|++|+
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            99999999999999988878889999999999998888876 56777788888888777 46666556666666666666


Q ss_pred             ccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc
Q psy12291        172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET  251 (404)
Q Consensus       172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  251 (404)
                      +++|.++.+.+..+..+++|++|+++                        +|.+..++...+..+++|+.|++++|.+..
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~------------------------~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILH------------------------MKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEE------------------------CSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             CCCCCcCccCHHHHhccccCCeecCC------------------------CCccccchhhhhhhcccccEEECCCCcccc
Confidence            66666665544444555555555554                        444444443334445666666666666655


Q ss_pred             cCccccc---CCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCccc
Q psy12291        252 IPAGSFA---NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS  328 (404)
Q Consensus       252 ~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  328 (404)
                      ++...+.   ..+.++.++++++.                   ++++.+..+ +..+..+++|+.|++++|+++.++...
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~-------------------l~~~~l~~l-~~~l~~l~~L~~L~Ls~N~l~~i~~~~  296 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVK-------------------ITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGI  296 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCB-------------------CCHHHHHHH-HHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccccccccccccchhhcccccccc-------------------ccCcchhhh-HHHHhcccCCCEEECCCCCCCccCHHH
Confidence            4432211   12233333333322                   222333333 345677889999999999999998877


Q ss_pred             ccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCC
Q psy12291        329 LSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDM  386 (404)
Q Consensus       329 ~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~  386 (404)
                      +..+++|+.|++++|||.|+|+ +.|+..|+......+ .....|++|    |++++++
T Consensus       297 ~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~-~~~~~C~~p----~~~l~~~  350 (353)
T 2z80_A          297 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-QGSAKCSGS----GKPVRSI  350 (353)
T ss_dssp             TTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE-ESCCBBTTT----CCBGGGC
T ss_pred             HhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC-CCCcccCCC----CCcceee
Confidence            8899999999999999999997 889999999887665 347899998    4566554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.6e-35  Score=269.93  Aligned_cols=302  Identities=22%  Similarity=0.341  Sum_probs=261.6

Q ss_pred             CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      +..+.+++.++.+..+|.. ....++++|++++|.++.+.+  +.++++|++|++++|.+..++  .|..+++|++|+++
T Consensus        44 ~~L~~L~l~~~~i~~~~~~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQGI-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLN  118 (347)
T ss_dssp             TTCSEEECCSSCCCCCTTG-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECT
T ss_pred             ccccEEEEeCCccccchhh-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECc
Confidence            4578899999999988753 345689999999999988865  899999999999999999875  37899999999999


Q ss_pred             CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC
Q psy12291        102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP  181 (404)
Q Consensus       102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~  181 (404)
                      +|.+..+++  +..+++|+.|++++|........ +..+++|+.|++++|.+.....  +..+++|++|++++|.+..++
T Consensus       119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          119 EDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCG
T ss_pred             CCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccc
Confidence            999998876  88899999999999954433332 6788999999999999887764  778899999999999998877


Q ss_pred             CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCC
Q psy12291        182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ  261 (404)
Q Consensus       182 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  261 (404)
                      +  +..+++|+.+++++|.+....+  +..+++|++|++++|.+...++  +..+++|++|++++|.+..++  .+..++
T Consensus       194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~  265 (347)
T 4fmz_A          194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLT  265 (347)
T ss_dssp             G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCT
T ss_pred             c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCC
Confidence            6  6788999999999999887654  7788999999999999988764  888999999999999998874  478899


Q ss_pred             CCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEcc
Q psy12291        262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLA  341 (404)
Q Consensus       262 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  341 (404)
                      +|+.|++++|.+++++  .+..+++|++|++++|+++...+..+..+++|++|++++|+++++++  +..+++|+.|+++
T Consensus       266 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~  341 (347)
T 4fmz_A          266 KLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA  341 (347)
T ss_dssp             TCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred             CcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence            9999999999999884  47889999999999999999888889999999999999999999876  7889999999999


Q ss_pred             CCcc
Q psy12291        342 KNPW  345 (404)
Q Consensus       342 ~Np~  345 (404)
                      +|++
T Consensus       342 ~N~i  345 (347)
T 4fmz_A          342 NQVI  345 (347)
T ss_dssp             CC--
T ss_pred             hhcc
Confidence            9986

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.6e-36  Score=283.69  Aligned_cols=305  Identities=26%  Similarity=0.352  Sum_probs=263.3

Q ss_pred             CCCceEEecCCCCCccCCC-CCCCCCeeEEEcCCCCCc-ccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEe
Q psy12291         22 PEIHTLSCWKQDMEELPFD-QIIPVDIRVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMD   99 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~-~~~~~~l~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~   99 (404)
                      +..+.++..++.++.++.. .....++++|++++|.+. .+.+..|.++++|++|++++|++..+.+..|..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            4578999999999988543 344568999999999986 67778899999999999999999999888899999999999


Q ss_pred             CCCCCCcc--cCccccCCCCCCcEEEccCCCCCcCCCc-cCCCCCCCCEEECCCCcccccccccccC-------------
Q psy12291        100 LSQNLIKT--LPSTFFKGAIRLTVVQLSYNAIESLPAN-VFHDLISLEELDLSQNVLTSIQYGTFSG-------------  163 (404)
Q Consensus       100 l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~-------------  163 (404)
                      +++|.++.  .....|..+++|++|++++|.++.+.+. .+.++++|+.|++++|.+....+..+..             
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            99999986  3344588999999999999999988554 4788999999999999988776554443             


Q ss_pred             ---------------------CccCcEEeccCCCCCCCCCC-------------------------------------cc
Q psy12291        164 ---------------------MYSLKRLKLQSNRINQLPPG-------------------------------------IF  185 (404)
Q Consensus       164 ---------------------l~~L~~L~l~~~~l~~~~~~-------------------------------------~~  185 (404)
                                           +++|++|++++|.++...+.                                     .+
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                 35788888888876531110                                     01


Q ss_pred             C--CCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCC
Q psy12291        186 D--DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSL  263 (404)
Q Consensus       186 ~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  263 (404)
                      .  ..++|++|++++|.+....+..+..+++|++|++++|.+..+++..+..+++|++|++++|.+..+++..+..+++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence            1  12589999999999999988999999999999999999999988899999999999999999999988889999999


Q ss_pred             cEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc
Q psy12291        264 EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       264 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  326 (404)
                      +.|++++|.++.+.+..|..+++|++|++++|+++.++...+..+++|++|++++|+++.-.+
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999988899999999999999999999999899999999999999999986543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.2e-35  Score=299.17  Aligned_cols=330  Identities=23%  Similarity=0.182  Sum_probs=252.0

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      ..+.++..++.+...++......++++|++++|.+....+..|.++++|++|++++|.+.+..+..  .+++|++|++++
T Consensus       201 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~  278 (768)
T 3rgz_A          201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE  278 (768)
T ss_dssp             TCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS
T ss_pred             cCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC
Confidence            467778887777664443444567888888888888777777888888888888888777433322  566677777777


Q ss_pred             CCCc-ccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc-ccccccccCCccCcEEeccCCCCCCC
Q psy12291        103 NLIK-TLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT-SIQYGTFSGMYSLKRLKLQSNRINQL  180 (404)
Q Consensus       103 n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~l~~~  180 (404)
                      |.++ .+|...+..+++|++|++++|.++...+..|..+++|+.|++++|.+. .++...+.++++|++|++++|.+++.
T Consensus       279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~  358 (768)
T 3rgz_A          279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE  358 (768)
T ss_dssp             SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred             CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence            7665 455543333477777777777776555555666777777777777665 33333366666666666666655422


Q ss_pred             CC-------------------------CccCC--CCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhh
Q psy12291        181 PP-------------------------GIFDD--LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF  233 (404)
Q Consensus       181 ~~-------------------------~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  233 (404)
                      .+                         ..+..  +++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+
T Consensus       359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l  438 (768)
T 3rgz_A          359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL  438 (768)
T ss_dssp             CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH
Confidence            11                         11222  5667777777777776777788889999999999999988777889


Q ss_pred             cCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcE
Q psy12291        234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKK  313 (404)
Q Consensus       234 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  313 (404)
                      ..+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|+++...+..+..+++|++
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            99999999999999998666667888999999999999999877888999999999999999999887888999999999


Q ss_pred             EeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHH
Q psy12291        314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM  354 (404)
Q Consensus       314 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~  354 (404)
                      |++++|++++..+..+..+++|+.|++++|++.+.++..++
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            99999999987788899999999999999999887765443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=5.6e-35  Score=265.93  Aligned_cols=288  Identities=24%  Similarity=0.379  Sum_probs=252.2

Q ss_pred             CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS  125 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  125 (404)
                      .++.++++++.++.++.. +  .++|+.|++++|.+..+++..|..+++|++|++++|.++.+++..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            588999999999887643 3  3689999999999999988889999999999999999999988889999999999999


Q ss_pred             CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC--CCCCccCCCCCCCeEecCCCcCcc
Q psy12291        126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ--LPPGIFDDLKYLDFLSLRNNRLSF  203 (404)
Q Consensus       126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~  203 (404)
                      +|.++.++...+   ++|++|++++|.+..+.+..|.++++|++|++++|.++.  +.+..+..+ +|++|++++|.++.
T Consensus       111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            999999887654   799999999999999988889999999999999999964  666677777 99999999999988


Q ss_pred             cCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccC
Q psy12291        204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG  283 (404)
Q Consensus       204 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  283 (404)
                      ++....   ++|++|++++|.+...++..+..+++|+.|++++|.+..+++..+..+++|+.|++++|.++.++. .+..
T Consensus       187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~  262 (332)
T 2ft3_A          187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA-GLPD  262 (332)
T ss_dssp             CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT-TGGG
T ss_pred             cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh-hhhc
Confidence            765432   789999999999999988889999999999999999999988788999999999999999998865 4788


Q ss_pred             CCCCCeeecccccccccCccccCCC------CCCcEEeCCCCCCc--ccCcccccCCCCCcEEEccCCc
Q psy12291        284 LTNLTALFLNNNLLRYLDTKAFEPM------LHLKKLQLDSNKLQ--YLATDSLSLLPNLITLKLAKNP  344 (404)
Q Consensus       284 ~~~L~~L~l~~n~i~~~~~~~~~~l------~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~l~~Np  344 (404)
                      +++|++|++++|+++.++...|...      +.|+.|++++|.+.  .+++..+..+++|+.+++++|.
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            9999999999999999988777653      67899999999988  6778888899999999999874

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=3.6e-34  Score=260.42  Aligned_cols=269  Identities=26%  Similarity=0.360  Sum_probs=168.0

Q ss_pred             CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291         70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS  149 (404)
Q Consensus        70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  149 (404)
                      +++.++++++.++.+|...   .+++++|++++|.++.+++..|.++++|++|++++|.++.+.+..|..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            3444555554444444322   2344555555555555544444555555555555555554444444455555555555


Q ss_pred             CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcc--cCCCccCCCCCCCEEECCCCcCCC
Q psy12291        150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF--IRPGLFNYFKHLTFLELSENWISS  227 (404)
Q Consensus       150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~  227 (404)
                      +|.+..++...+   ++|++|++++|.++.+++..|..+++|++|++++|.+..  ..+..+..+++|++|++++|.+..
T Consensus       109 ~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            555444432221   355555555555555554445555555555555555532  334455566666666666666665


Q ss_pred             CChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCC
Q psy12291        228 LNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP  307 (404)
Q Consensus       228 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  307 (404)
                      ++...   .++|++|++++|.+..+++..+..+++|+.|++++|.++.+++..+..+++|++|++++|+++.++. .+..
T Consensus       186 l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~  261 (330)
T 1xku_A          186 IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLAD  261 (330)
T ss_dssp             CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTT
T ss_pred             CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-hhcc
Confidence            54322   2577888888888877766677778888888888888888777777788888888888888887643 4677


Q ss_pred             CCCCcEEeCCCCCCcccCcccccC------CCCCcEEEccCCccccc
Q psy12291        308 MLHLKKLQLDSNKLQYLATDSLSL------LPNLITLKLAKNPWHCD  348 (404)
Q Consensus       308 l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~l~l~~Np~~C~  348 (404)
                      +++|++|++++|++++++...+..      .+.++.+++.+||+.+.
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence            888888888888888887766643      37889999999998653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.2e-35  Score=297.28  Aligned_cols=326  Identities=24%  Similarity=0.228  Sum_probs=239.6

Q ss_pred             CCCceEEecCCCCC-ccCCCCCCCCCeeEEEcCCCCCc-ccChhhcCCCCCCCEEEccCCcCc-ccCcccccC-------
Q psy12291         22 PEIHTLSCWKQDME-ELPFDQIIPVDIRVIDLGINQLS-TLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIS-------   91 (404)
Q Consensus        22 ~~~~~~~~~~~~l~-~ip~~~~~~~~l~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~-------   91 (404)
                      +..+.++..++.+. .+|.......++++|++++|.+. .++...|.++++|++|++++|.+. .++.. +..       
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~  372 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLT  372 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSE
T ss_pred             CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcE
Confidence            34677888877776 34433334457888888888876 555555788888888888888776 33322 222       


Q ss_pred             --------------------CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC
Q psy12291         92 --------------------TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN  151 (404)
Q Consensus        92 --------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~  151 (404)
                                          +++|++|++++|.++...+..+.++++|++|++++|.++...+..+..+++|+.|++++|
T Consensus       373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n  452 (768)
T 3rgz_A          373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN  452 (768)
T ss_dssp             EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence                                344555555555555433344666777777777777776555555677777777777777


Q ss_pred             cccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChh
Q psy12291        152 VLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGD  231 (404)
Q Consensus       152 ~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  231 (404)
                      .+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+.
T Consensus       453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  532 (768)
T 3rgz_A          453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA  532 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence            77766666777777788888888877766666677778888888888887777677777788888888888888766667


Q ss_pred             hhcCCCCCcEEECCCCCCc-ccCcc-------------------------------------------------------
Q psy12291        232 EFSQLTSLKELHLGQNYIE-TIPAG-------------------------------------------------------  255 (404)
Q Consensus       232 ~~~~l~~L~~L~l~~~~l~-~~~~~-------------------------------------------------------  255 (404)
                      .+..+++|+.|++++|.+. .+|..                                                       
T Consensus       533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (768)
T 3rgz_A          533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP  612 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred             HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence            7778888888888887665 22221                                                       


Q ss_pred             --------------cccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCC
Q psy12291        256 --------------SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL  321 (404)
Q Consensus       256 --------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  321 (404)
                                    .+..+++|+.|++++|.+++..+..++.++.|++|+|++|+++...+..+..+++|+.|+|++|++
T Consensus       613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL  692 (768)
T ss_dssp             SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence                          123356788888888888877777888899999999999999877788888899999999999999


Q ss_pred             cccCcccccCCCCCcEEEccCCccccc
Q psy12291        322 QYLATDSLSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       322 ~~~~~~~~~~l~~L~~l~l~~Np~~C~  348 (404)
                      ++..+..+..+++|+.|++++|++...
T Consensus       693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          693 DGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             EECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             cCcCChHHhCCCCCCEEECcCCccccc
Confidence            988788888999999999999988643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.9e-35  Score=271.82  Aligned_cols=316  Identities=21%  Similarity=0.283  Sum_probs=264.0

Q ss_pred             CCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      ..+.++..++.++.+|... ....++++|++++|.+..+.+.+|.++++|++|++++|.+..+++..|..+++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            3567788888888888642 123579999999999999998899999999999999999999999889999999999999


Q ss_pred             CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccC----------------Cc
Q psy12291        102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG----------------MY  165 (404)
Q Consensus       102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~----------------l~  165 (404)
                      +|.++.++...|..+++|++|++++|.++.+++..|..+++|+.|++++|.+..+....+..                .+
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~  205 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI  205 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCS
T ss_pred             CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCC
Confidence            99999999988899999999999999999998888999999999999999988765433322                23


Q ss_pred             cCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291        166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG  245 (404)
Q Consensus       166 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  245 (404)
                      +|++|++++|.+..++..   ..++|+.|++++|.++..  ..+..+++|++|++++|.+..+.+..+..+++|++|+++
T Consensus       206 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          206 AVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             SCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             cceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence            456666666666665543   347899999999999875  468889999999999999999888889999999999999


Q ss_pred             CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291        246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  325 (404)
                      +|.+..++. .+..+++|+.|++++|.++.++.. +..+++|++|++++|+++.++   +..+++|+.|++++|++....
T Consensus       281 ~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          281 NNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             SSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchh
Confidence            999999876 457789999999999999988653 677899999999999999885   567789999999999998643


Q ss_pred             cccccCCCCCcEEEccCCccccccC
Q psy12291        326 TDSLSLLPNLITLKLAKNPWHCDCA  350 (404)
Q Consensus       326 ~~~~~~l~~L~~l~l~~Np~~C~c~  350 (404)
                      ..  .-+..+....+.+++..|.+.
T Consensus       356 ~~--~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          356 LR--ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             HH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred             HH--HHHHHHHhhcccccCceeccc
Confidence            22  223344444567888888754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.7e-33  Score=257.82  Aligned_cols=283  Identities=22%  Similarity=0.333  Sum_probs=253.8

Q ss_pred             CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL  124 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  124 (404)
                      .++++|+++++.+..+.  .+..+++|++|++++|++.+++.  |..+++|++|++++|.++.++.  +..+++|++|++
T Consensus        44 ~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l  117 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYL  117 (347)
T ss_dssp             TTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             ccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchH--HcCCCcCCEEEC
Confidence            47999999999998875  48889999999999999999877  7899999999999999998864  889999999999


Q ss_pred             cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc
Q psy12291        125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI  204 (404)
Q Consensus       125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  204 (404)
                      ++|.+..++.  +..+++|+.|++++|...... ..+..+++|++|++++|.+..++.  +..+++|+.|++++|.+..+
T Consensus       118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          118 NEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             TTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred             cCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence            9999998876  778999999999999544433 348889999999999999988765  68899999999999999877


Q ss_pred             CCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291        205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL  284 (404)
Q Consensus       205 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  284 (404)
                      .+  +..+++|+.+++++|.+....+  +..+++|++|++++|.+..++.  +..+++|+.|++++|.++.++  .+..+
T Consensus       193 ~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l  264 (347)
T 4fmz_A          193 SP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDL  264 (347)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTC
T ss_pred             cc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcC
Confidence            55  7889999999999999988764  7889999999999999998876  788999999999999999874  58889


Q ss_pred             CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291        285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       285 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~  348 (404)
                      ++|++|++++|+++.+  ..+..+++|+.|++++|+++..++..+..+++|+.|++++|++...
T Consensus       265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            9999999999999987  4578899999999999999999888899999999999999998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.9e-34  Score=282.88  Aligned_cols=318  Identities=21%  Similarity=0.266  Sum_probs=201.7

Q ss_pred             CCCceEEecCCCCCc------------------cCCCCC--CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-
Q psy12291         22 PEIHTLSCWKQDMEE------------------LPFDQI--IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH-   80 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~------------------ip~~~~--~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-   80 (404)
                      +..+.++..++.++.                  +|....  ...++++|++++|.+.+..+..|.++++|++|++++|+ 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            457888999998988                  888766  56789999999998887777888899999999999997 


Q ss_pred             Ccc--cCcccccCC------CCCCEEeCCCCCCcccCc-cccCCCCCCcEEEccCCCCC-cCCCccCCCCCCCCEEECCC
Q psy12291         81 LSE--LPGKLFIST------INLSTMDLSQNLIKTLPS-TFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEELDLSQ  150 (404)
Q Consensus        81 l~~--~~~~~~~~~------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~  150 (404)
                      +++  +|.. +..+      ++|++|++++|.++.+|. ..+..+++|++|++++|.++ .++  .+..+++|+.|++++
T Consensus       286 l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~  362 (636)
T 4eco_A          286 ISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY  362 (636)
T ss_dssp             SCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS
T ss_pred             CccccchHH-HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC
Confidence            775  5543 3333      788888888888887776 24778888888888888888 666  466777778888877


Q ss_pred             CcccccccccccCCcc-CcEEeccCCCCCCCCCCccCCC--CCCCeEecCCCcCcccCCCccC-------CCCCCCEEEC
Q psy12291        151 NVLTSIQYGTFSGMYS-LKRLKLQSNRINQLPPGIFDDL--KYLDFLSLRNNRLSFIRPGLFN-------YFKHLTFLEL  220 (404)
Q Consensus       151 ~~l~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l  220 (404)
                      |.+..++ ..+.++++ |++|++++|.++.++.. +..+  ++|++|++++|.+....+..+.       .+++|++|++
T Consensus       363 N~l~~lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          363 NQITEIP-ANFCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             SEEEECC-TTSEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             Ccccccc-HhhhhhcccCcEEEccCCcCcccchh-hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            7777444 34666666 77777777777766542 3332  2566666666666555444444       4455666666


Q ss_pred             CCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCC-------CCcEEECcCCCccccccccc-cCCCCCCeeec
Q psy12291        221 SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ-------SLEKLFLYSNNIQELHAGTF-AGLTNLTALFL  292 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l  292 (404)
                      ++|.+..++...+..+++|++|++++|.+..++...+....       +|+.|++++|.++.++...+ ..+++|++|++
T Consensus       441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~L  520 (636)
T 4eco_A          441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL  520 (636)
T ss_dssp             CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEEC
T ss_pred             cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEEC
Confidence            66655555544444455555555555555544443332221       44555555554444433222 24444444444


Q ss_pred             ccccccc-----------------------------cCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCC
Q psy12291        293 NNNLLRY-----------------------------LDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN  343 (404)
Q Consensus       293 ~~n~i~~-----------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~N  343 (404)
                      ++|+++.                             ..+..+..+++|++|++++|+++.++....   ++|+.|++++|
T Consensus       521 s~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N  597 (636)
T 4eco_A          521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDN  597 (636)
T ss_dssp             CSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSC
T ss_pred             CCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCC
Confidence            4444444                             334444455555666666665555544311   55666666666


Q ss_pred             cccc
Q psy12291        344 PWHC  347 (404)
Q Consensus       344 p~~C  347 (404)
                      |+.|
T Consensus       598 ~l~~  601 (636)
T 4eco_A          598 PNIS  601 (636)
T ss_dssp             TTCE
T ss_pred             CCcc
Confidence            6654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.1e-33  Score=267.34  Aligned_cols=303  Identities=28%  Similarity=0.420  Sum_probs=179.6

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      ..+.+++.+.+++.+|.. ....++++|++++|.+..+.+  +.++++|++|++++|.+..+++  |..+++|++|++++
T Consensus        47 ~l~~L~l~~~~i~~l~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           47 QVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN  121 (466)
T ss_dssp             TCCEEECCSSCCCCCTTG-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             cccEEecCCCCCccCcch-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence            466777777777777642 234578888888887777654  7777788888888887777765  67777788888887


Q ss_pred             CCCcccCccccCCCCCCcEEEccCCCCCcCCC-------------------ccCCCCCCCCEEECCCCcccccccccccC
Q psy12291        103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA-------------------NVFHDLISLEELDLSQNVLTSIQYGTFSG  163 (404)
Q Consensus       103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------------------~~~~~l~~L~~L~l~~~~l~~~~~~~l~~  163 (404)
                      |.++.+++  +..+++|++|++++|.+..++.                   ..+..+++|+.|++++|.+..+.  .+..
T Consensus       122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~l~~  197 (466)
T 1o6v_A          122 NQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS--VLAK  197 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGG
T ss_pred             CCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh--hhcc
Confidence            77777665  6677777777777766554331                   11455667777777777766553  3566


Q ss_pred             CccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEE
Q psy12291        164 MYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELH  243 (404)
Q Consensus       164 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  243 (404)
                      +++|++|++++|.+..+++  +..+++|+.|++++|.++.+  ..+..+++|+.|++++|.+...++  +..+++|+.|+
T Consensus       198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  271 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK  271 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence            6677777777776665544  34556666666666655543  234455555555555555554432  44555555555


Q ss_pred             CCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc--------------------c
Q psy12291        244 LGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT--------------------K  303 (404)
Q Consensus       244 l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~--------------------~  303 (404)
                      +++|.+..+++  +..+++|+.|++++|.++++++  +..+++|++|++++|+++.+.+                    .
T Consensus       272 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          272 LGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred             CCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch
Confidence            55555554443  4444555555555555444433  3444444444444444444332                    2


Q ss_pred             ccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291        304 AFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       304 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~  346 (404)
                      .+..+++|+.|++++|+++++.+  +..+++|+.|++++|+|.
T Consensus       348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence            34444555555555555554443  444555555555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=6.5e-34  Score=280.36  Aligned_cols=323  Identities=19%  Similarity=0.246  Sum_probs=220.8

Q ss_pred             CCCceEEecCCCCC-ccCCCCCCCCCeeEEEcCCCC-Ccc-cChhhcCCC------CCCCEEEccCCcCcccCc-ccccC
Q psy12291         22 PEIHTLSCWKQDME-ELPFDQIIPVDIRVIDLGINQ-LST-LSKDAFTGL------YKLTELKLRKNHLSELPG-KLFIS   91 (404)
Q Consensus        22 ~~~~~~~~~~~~l~-~ip~~~~~~~~l~~L~l~~~~-i~~-~~~~~~~~~------~~L~~L~l~~~~l~~~~~-~~~~~   91 (404)
                      +..+.++..++.+. .+|.......++++|++++|. ++. ..+..+.++      ++|++|++++|+++.+|. ..|..
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~  328 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK  328 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT
T ss_pred             CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhcc
Confidence            45777777777653 455444444567777777776 664 333334333      566666666666665554 23455


Q ss_pred             CCCCCEEeCCCCCCc-ccC----------------------ccccCCCCC-CcEEEccCCCCCcCCCccCCCC--CCCCE
Q psy12291         92 TINLSTMDLSQNLIK-TLP----------------------STFFKGAIR-LTVVQLSYNAIESLPANVFHDL--ISLEE  145 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~-~~~----------------------~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l--~~L~~  145 (404)
                      +++|++|++++|.++ .+|                      .. +..+++ |++|++++|.++.++.. +...  ++|+.
T Consensus       329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~-~~~~~l~~L~~  406 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNI-FDAKSVSVMSA  406 (636)
T ss_dssp             CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSCCSC-CCTTCSSCEEE
T ss_pred             CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCcccchh-hhhcccCccCE
Confidence            566666666666555 444                      33 444555 66666666666655542 2332  25666


Q ss_pred             EECCCCccccccccccc-------CCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCC-----
Q psy12291        146 LDLSQNVLTSIQYGTFS-------GMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK-----  213 (404)
Q Consensus       146 L~l~~~~l~~~~~~~l~-------~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----  213 (404)
                      |++++|.+....+..+.       .+++|++|++++|.++.++...+..+++|++|++++|.++.++...+....     
T Consensus       407 L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~  486 (636)
T 4eco_A          407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN  486 (636)
T ss_dssp             EECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTT
T ss_pred             EECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccc
Confidence            66666666665555555       566888888888888888877777788899999999988877665555443     


Q ss_pred             --CCCEEECCCCcCCCCChhhhc--CCCCCcEEECCCCCCcccCcccccCCCCCcEEEC------cCCCccccccccccC
Q psy12291        214 --HLTFLELSENWISSLNGDEFS--QLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL------YSNNIQELHAGTFAG  283 (404)
Q Consensus       214 --~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~~~~  283 (404)
                        +|+.|++++|.+..++. .+.  .+++|++|++++|.+..+|. .+..+++|+.|++      ++|.+....+..+..
T Consensus       487 l~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          487 TYLLTSIDLRFNKLTKLSD-DFRATTLPYLVGIDLSYNSFSKFPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             GGGCCEEECCSSCCCBCCG-GGSTTTCTTCCEEECCSSCCSSCCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cCCccEEECcCCcCCccCh-hhhhccCCCcCEEECCCCCCCCcCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence              89999999999987664 454  88999999999999998776 5678999999999      456677666778889


Q ss_pred             CCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccC--CCCCcEEEccCCccccccCc
Q psy12291        284 LTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL--LPNLITLKLAKNPWHCDCAI  351 (404)
Q Consensus       284 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~l~l~~Np~~C~c~~  351 (404)
                      +++|++|++++|+++.++....   ++|+.|++++|++..++...+..  ...+..+........++|+.
T Consensus       565 l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~  631 (636)
T 4eco_A          565 CPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA  631 (636)
T ss_dssp             CSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGG
T ss_pred             CCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCcc
Confidence            9999999999999988876533   79999999999999876433221  12344555555555566653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.1e-33  Score=265.28  Aligned_cols=281  Identities=25%  Similarity=0.378  Sum_probs=246.0

Q ss_pred             CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL  124 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  124 (404)
                      .+++.|+++++.+..++  .+..+++|++|++++|.+..+++  |..+++|++|++++|.+..+++  +.++++|++|++
T Consensus        46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence            47999999999998875  47889999999999999999886  7899999999999999998887  889999999999


Q ss_pred             cCCCCCcCCCccCCCCCCCCEEECCCCccccccc-------------------ccccCCccCcEEeccCCCCCCCCCCcc
Q psy12291        125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQY-------------------GTFSGMYSLKRLKLQSNRINQLPPGIF  185 (404)
Q Consensus       125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-------------------~~l~~l~~L~~L~l~~~~l~~~~~~~~  185 (404)
                      ++|.++.++.  +..+++|++|++++|.+..+..                   ..+.++++|+.|++++|.+..++.  +
T Consensus       120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--l  195 (466)
T 1o6v_A          120 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--L  195 (466)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh--h
Confidence            9999998876  7889999999999998765432                   235677899999999999988753  6


Q ss_pred             CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcE
Q psy12291        186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEK  265 (404)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  265 (404)
                      ..+++|++|++++|.+....+  +..+++|+.|++++|.+..++  .+..+++|+.|++++|.+..+++  +..+++|+.
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  269 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  269 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch--hhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence            889999999999999987755  678999999999999998874  67899999999999999998875  788999999


Q ss_pred             EECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        266 LFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       266 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      |++++|.++.+++  +..+++|++|++++|+++.+++  +..+++|+.|++++|+++++++  +..+++|+.|++++|++
T Consensus       270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred             EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence            9999999999876  7889999999999999998765  6788999999999999988765  56777888888887776


Q ss_pred             cc
Q psy12291        346 HC  347 (404)
Q Consensus       346 ~C  347 (404)
                      ..
T Consensus       344 ~~  345 (466)
T 1o6v_A          344 SD  345 (466)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=100.00  E-value=2.3e-33  Score=248.55  Aligned_cols=263  Identities=28%  Similarity=0.489  Sum_probs=177.6

Q ss_pred             CceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCC
Q psy12291         17 PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLS   96 (404)
Q Consensus        17 ~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~   96 (404)
                      .|.|......++|.+.++..+|..  ++.++++|++++|.++.+.+..|.++++|++|++++|++..++...|..+++|+
T Consensus         2 ~C~~~~~~~~~~c~~~~l~~ip~~--l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   79 (276)
T 2z62_A            2 PCVEVVPNITYQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS   79 (276)
T ss_dssp             CSEEEETTTEEECTTSCCSSCCSS--SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CceeccCCceEEecCCCccccCCC--CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCC
Confidence            577776677899999999999986  678899999999999988887888889999999999988888887788888888


Q ss_pred             EEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCC
Q psy12291         97 TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR  176 (404)
Q Consensus        97 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  176 (404)
                      +|++++|.++.+++..|.++++|++|++++|.+..++...+..+++|++|++++|.                        
T Consensus        80 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------------------------  135 (276)
T 2z62_A           80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL------------------------  135 (276)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC------------------------
T ss_pred             EEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc------------------------
Confidence            88888888887776667777777777777777666555445555555555555544                        


Q ss_pred             CCCCC-CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc
Q psy12291        177 INQLP-PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG  255 (404)
Q Consensus       177 l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  255 (404)
                      ++.+. +..+..+++|++|++++|+++.                        +++..+..+++|+               
T Consensus       136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~~~l~~L~---------------  176 (276)
T 2z62_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQS------------------------IYCTDLRVLHQMP---------------  176 (276)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCE------------------------ECGGGGHHHHTCT---------------
T ss_pred             cceecCchhhccCCCCCEEECCCCCCCc------------------------CCHHHhhhhhhcc---------------
Confidence            43322 1222333333333333332222                        2111121111111               


Q ss_pred             cccCCCCCc-EEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCC
Q psy12291        256 SFANLQSLE-KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN  334 (404)
Q Consensus       256 ~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  334 (404)
                            .+. .|++++|                        +++.+++..+.. .+|+.|++++|+++.++...+..+++
T Consensus       177 ------~l~l~L~ls~n------------------------~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          177 ------LLNLSLDLSLN------------------------PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTS  225 (276)
T ss_dssp             ------TCCEEEECCSS------------------------CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred             ------ccceeeecCCC------------------------cccccCccccCC-CcccEEECCCCceeecCHhHhccccc
Confidence                  111 3344444                        333333333332 26777777888888877777888999


Q ss_pred             CcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeCCCC
Q psy12291        335 LITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCRGPG  376 (404)
Q Consensus       335 L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~~p~  376 (404)
                      |+.|++++|||.|+|+ +.|+..|+...... ......|..|+
T Consensus       226 L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~-~~~~~~C~~~~  267 (276)
T 2z62_A          226 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK-EQGSAKCSGSG  267 (276)
T ss_dssp             CCEEECCSSCBCCCTTTTHHHHHHHHHTGGG-BCSCCBBTTTC
T ss_pred             ccEEEccCCcccccCCchHHHHHHHHhcccc-cCCCceeeCCC
Confidence            9999999999999996 78899999876544 33467899874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-33  Score=278.83  Aligned_cols=319  Identities=17%  Similarity=0.201  Sum_probs=207.1

Q ss_pred             CCCceEEecCCCCCc------------------cCCCCC--CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-
Q psy12291         22 PEIHTLSCWKQDMEE------------------LPFDQI--IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH-   80 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~------------------ip~~~~--~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-   80 (404)
                      +..+.++..++.++.                  +|....  ...+|++|++++|.+....+..|.++++|+.|++++|+ 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            457889999999998                  888765  56789999999999877777889999999999999997 


Q ss_pred             Ccc--cCcc------cccCCCCCCEEeCCCCCCcccCc-cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC
Q psy12291         81 LSE--LPGK------LFISTINLSTMDLSQNLIKTLPS-TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN  151 (404)
Q Consensus        81 l~~--~~~~------~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~  151 (404)
                      ++.  +|..      .+..+++|++|++++|.++.+|. ..+.++++|+.|++++|.++.++  .|..+++|+.|++++|
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N  605 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN  605 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCC
Confidence            775  5542      23455689999999999998886 34888999999999999998777  5788889999999999


Q ss_pred             cccccccccccCCcc-CcEEeccCCCCCCCCCCccCCCC--CCCeEecCCCcCcccCCCcc---C--CCCCCCEEECCCC
Q psy12291        152 VLTSIQYGTFSGMYS-LKRLKLQSNRINQLPPGIFDDLK--YLDFLSLRNNRLSFIRPGLF---N--YFKHLTFLELSEN  223 (404)
Q Consensus       152 ~l~~~~~~~l~~l~~-L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~---~--~l~~L~~L~l~~~  223 (404)
                      .+..++ ..+..+++ |+.|++++|.++.++. .+..++  +|+.|++++|.+.+..+...   .  ..++|+.|++++|
T Consensus       606 ~l~~lp-~~l~~l~~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N  683 (876)
T 4ecn_A          606 QIEEIP-EDFCAFTDQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN  683 (876)
T ss_dssp             CCSCCC-TTSCEECTTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred             ccccch-HHHhhccccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence            888554 45777777 9999999988887664 344443  37777777776654332211   1  2235566666666


Q ss_pred             cCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCC-------CCCcEEECcCCCccccccccc-cCCCCCCeeecccc
Q psy12291        224 WISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL-------QSLEKLFLYSNNIQELHAGTF-AGLTNLTALFLNNN  295 (404)
Q Consensus       224 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~l~~n  295 (404)
                      .+..++...+..+++|+.|++++|.+..++...+...       ++|+.|+|++|.++.++...+ ..+++|+.|+|++|
T Consensus       684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N  763 (876)
T 4ecn_A          684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN  763 (876)
T ss_dssp             CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS
T ss_pred             cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC
Confidence            6555554444455555555555555555554333222       155555555555554443222 24555555555555


Q ss_pred             cccccCccccCCCCCCcEEeCCC------CCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        296 LLRYLDTKAFEPMLHLKKLQLDS------NKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       296 ~i~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      +++.+ +..+..+++|+.|+|++      |++.+..+..+..+++|+.|+|++|++
T Consensus       764 ~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          764 CFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            55554 22233444555554433      333333333444444444444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.3e-33  Score=274.83  Aligned_cols=290  Identities=22%  Similarity=0.299  Sum_probs=248.7

Q ss_pred             CceEEecCCCCCccCCCCC-CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQI-IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~-~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      .+.++..++.+..+|...+ ...++++|++++|.+..+.+..|.++++|+.|++++|.+..+++..|..+++|++|++++
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  132 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER  132 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeC
Confidence            4567777777778876421 135799999999999999988999999999999999999999999999999999999999


Q ss_pred             CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccC----------------Ccc
Q psy12291        103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG----------------MYS  166 (404)
Q Consensus       103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~----------------l~~  166 (404)
                      |.++.+|+..|.++++|++|++++|.++.+++..|..+++|+.|++++|.+..+....+..                .++
T Consensus       133 n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~  212 (597)
T 3oja_B          133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIA  212 (597)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTT
T ss_pred             CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCch
Confidence            9999999988899999999999999999999888999999999999999988765433322                234


Q ss_pred             CcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCC
Q psy12291        167 LKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ  246 (404)
Q Consensus       167 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  246 (404)
                      |+.|++++|.+..++...   .++|+.|++++|.++..  ..+..+++|+.|++++|.+..+.+..+..+++|+.|++++
T Consensus       213 L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          213 VEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             CSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             hheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence            556666666666555433   36899999999999874  5688899999999999999999888999999999999999


Q ss_pred             CCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcc
Q psy12291        247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       247 ~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  323 (404)
                      |.+..++. .+..+++|+.|+|++|.++.++. .+..+++|++|++++|.++.++   +..+++|+.|++++|.+..
T Consensus       288 N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~-~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          288 NRLVALNL-YGQPIPTLKVLDLSHNHLLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SCCCEEEC-SSSCCTTCCEEECCSSCCCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CCCCCCCc-ccccCCCCcEEECCCCCCCccCc-ccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence            99999876 45678999999999999998865 4678899999999999999875   5667899999999999875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-33  Score=283.65  Aligned_cols=277  Identities=19%  Similarity=0.191  Sum_probs=173.8

Q ss_pred             hhcCCCCCCCEEEccCCcCcc------------------cCccc-ccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEE
Q psy12291         63 DAFTGLYKLTELKLRKNHLSE------------------LPGKL-FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQ  123 (404)
Q Consensus        63 ~~~~~~~~L~~L~l~~~~l~~------------------~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  123 (404)
                      ..|.++++|+.|+|++|.+++                  +|... |..+++|++|++++|.+....+..|.++++|+.|+
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            457778888888888888887                  66553 33788888888888875543334477777888888


Q ss_pred             ccCCC-CCc--CCCc------cCCCCCCCCEEECCCCccccccc-ccccCCccCcEEeccCCCCCCCCCCccCCCCCCCe
Q psy12291        124 LSYNA-IES--LPAN------VFHDLISLEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF  193 (404)
Q Consensus       124 l~~n~-l~~--~~~~------~~~~l~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~  193 (404)
                      +++|. ++.  +|..      .+..+++|+.|++++|.+..++. ..+.++++|+.|++++|.++.++  .|..+++|+.
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~  599 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTD  599 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESE
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceE
Confidence            88776 653  3321      23445577777777777774442 25667777777777777777655  4667777777


Q ss_pred             EecCCCcCcccCCCccCCCCC-CCEEECCCCcCCCCChhhhcCC-------------------------------CCCcE
Q psy12291        194 LSLRNNRLSFIRPGLFNYFKH-LTFLELSENWISSLNGDEFSQL-------------------------------TSLKE  241 (404)
Q Consensus       194 L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l-------------------------------~~L~~  241 (404)
                      |++++|.+..+ +..+..+++ |+.|++++|.+..++ ..+..+                               ++|+.
T Consensus       600 L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          600 LKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             EECCSSCCSCC-CTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             EECcCCccccc-hHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            77777776643 334556666 777777766666443 222222                               24555


Q ss_pred             EECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC-------CCCCeeecccccccccCcccc-CCCCCCcE
Q psy12291        242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL-------TNLTALFLNNNLLRYLDTKAF-EPMLHLKK  313 (404)
Q Consensus       242 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~  313 (404)
                      |++++|.+..++...+..+++|+.|+|++|.++.++...+...       ++|++|+|++|+++.++.... ..+++|+.
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~  757 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN  757 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCE
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCE
Confidence            5555555555555444456666666666666666655444332       266667777666665543332 35666777


Q ss_pred             EeCCCCCCcccCcccccCCCCCcEEEccCCc
Q psy12291        314 LQLDSNKLQYLATDSLSLLPNLITLKLAKNP  344 (404)
Q Consensus       314 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np  344 (404)
                      |+|++|++++++. .+..+++|+.|+|++|+
T Consensus       758 L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          758 MDVSYNCFSSFPT-QPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             EECCSSCCSSCCC-GGGGCTTCCEEECCCCB
T ss_pred             EEeCCCCCCccch-hhhcCCCCCEEECCCCC
Confidence            7777777666533 35566677777776655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.4e-32  Score=267.76  Aligned_cols=154  Identities=25%  Similarity=0.294  Sum_probs=138.7

Q ss_pred             eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291         47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY  126 (404)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  126 (404)
                      -++++.+++.++.++.. +.  +++++|++++|.++++++..|.++++|++|++++|.++.+++..|.++++|++|++++
T Consensus        13 ~~~~~c~~~~l~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDD-IP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TTEEECTTSCCSSCCTT-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEccCCCcccCCCC-CC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence            35789999999988753 33  7899999999999999998899999999999999999999888899999999999999


Q ss_pred             CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC-CCccCCCCCCCeEecCCCcCcc
Q psy12291        127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLSLRNNRLSF  203 (404)
Q Consensus       127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~  203 (404)
                      |.++.+++..|.++++|++|++++|.+..+.+..+.++++|++|++++|.+..+. +..|..+++|++|++++|.++.
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            9999998888999999999999999999998888999999999999999998643 5668899999999998886553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=100.00  E-value=6.1e-32  Score=238.38  Aligned_cols=221  Identities=35%  Similarity=0.604  Sum_probs=161.7

Q ss_pred             cCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291        166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG  245 (404)
Q Consensus       166 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  245 (404)
                      ++++|++++|.++.+++..|..+++|++|++++|.++.+++..|..+++|++|++++|.+..+++..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            34444444444444444444444455555555554444444444555555666666666665555566667777777777


Q ss_pred             CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291        246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  325 (404)
                      +|.+..+++..+..+++|+.|++++|.++.++...|..+++|++|++++|+++.+++..|..+++|++|++++|+++.++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            77777777767777888888888888888887777888889999999999998888888888999999999999999999


Q ss_pred             cccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCc-ccC-CCCeeCCCCCCCCCcccCCCCcC
Q psy12291        326 TDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRK-VWD-SKPTCRGPGNLGGKSVEDMSFDD  390 (404)
Q Consensus       326 ~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~-~~~-~~~~C~~p~~l~~~~l~~~~~~~  390 (404)
                      +..+..+++|+.|++++|||.|+|. +.|+..|+...... +.. ....|+.+    |+.+.++...+
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~  261 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKG----GKAVLEITEKD  261 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSSS----CSBGGGCCTTT
T ss_pred             HHHhccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCCC----CeEeEEecchh
Confidence            8888999999999999999999998 78999999876543 222 25778753    67788887666

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.9e-32  Score=263.40  Aligned_cols=291  Identities=23%  Similarity=0.236  Sum_probs=231.4

Q ss_pred             eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291         47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY  126 (404)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  126 (404)
                      .+++++++++++.++.. +.  ++|++|++++|.+.++++..|..+++|++|++++|.++.+++..|.++++|++|++++
T Consensus        33 ~~~l~ls~~~L~~ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCSCCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCccCCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            48999999999988654 32  7999999999999999988899999999999999999999888899999999999999


Q ss_pred             CCCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCCCCCCCCCCccCCC-----------------
Q psy12291        127 NAIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQLPPGIFDDL-----------------  188 (404)
Q Consensus       127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l-----------------  188 (404)
                      |.++.++..   .+++|++|++++|.+..++ +..|.++++|++|++++|.++......+..+                 
T Consensus       110 N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~  186 (562)
T 3a79_B          110 NRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG  186 (562)
T ss_dssp             SCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred             CcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeeccccccccc
Confidence            999999875   6899999999999999876 4688999999999999998764321111111                 


Q ss_pred             ----------------------------------C---------------------------------------------
Q psy12291        189 ----------------------------------K---------------------------------------------  189 (404)
Q Consensus       189 ----------------------------------~---------------------------------------------  189 (404)
                                                        +                                             
T Consensus       187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~  266 (562)
T 3a79_B          187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS  266 (562)
T ss_dssp             SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH
T ss_pred             CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH
Confidence                                              0                                             


Q ss_pred             ----------CCCeEecCCCcCcccCCCcc--------------------------------------------------
Q psy12291        190 ----------YLDFLSLRNNRLSFIRPGLF--------------------------------------------------  209 (404)
Q Consensus       190 ----------~L~~L~l~~~~~~~~~~~~~--------------------------------------------------  209 (404)
                                +|++|++++|.+.+..+..+                                                  
T Consensus       267 ~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~  346 (562)
T 3a79_B          267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM  346 (562)
T ss_dssp             HHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             HHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccc
Confidence                      23333333333331111111                                                  


Q ss_pred             ---CCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc--ccccCCCCCcEEECcCCCccc-cccccccC
Q psy12291        210 ---NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA--GSFANLQSLEKLFLYSNNIQE-LHAGTFAG  283 (404)
Q Consensus       210 ---~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~  283 (404)
                         ..+++|++|++++|.+....+..+..+++|+.|++++|.+..++.  ..+..+++|+.|++++|.++. ++...+..
T Consensus       347 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~  426 (562)
T 3a79_B          347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW  426 (562)
T ss_dssp             CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred             cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence               566788888888888888766778888888899998888887653  357788888999999888887 77777888


Q ss_pred             CCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291        284 LTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       284 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~  346 (404)
                      +++|++|++++|+++...+..+.  ++|+.|++++|+++.++...+ .+++|+.|++++|.+.
T Consensus       427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~  486 (562)
T 3a79_B          427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLK  486 (562)
T ss_dssp             CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCC
T ss_pred             cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCC
Confidence            88899999998888754333332  689999999999998877655 8999999999999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=263.11  Aligned_cols=290  Identities=24%  Similarity=0.289  Sum_probs=218.3

Q ss_pred             eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCC
Q psy12291         48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN  127 (404)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  127 (404)
                      ++|++++|+++.++.. +.  ++|++|++++|.+.++++..|..+++|++|++++|.++.+++..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            6799999999988654 43  89999999999999999888999999999999999999998778999999999999999


Q ss_pred             CCCcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCCCCCCC-------------------------C
Q psy12291        128 AIESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQL-------------------------P  181 (404)
Q Consensus       128 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~l~~~-------------------------~  181 (404)
                      .++.++..   .+++|++|++++|.+..+. +..++++++|++|++++|.++..                         .
T Consensus        80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~  156 (520)
T 2z7x_B           80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED  156 (520)
T ss_dssp             CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred             ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc
Confidence            99988875   6899999999999998753 46788899999999888876421                         1


Q ss_pred             CCccCCC-------------------------------------------------------------------------
Q psy12291        182 PGIFDDL-------------------------------------------------------------------------  188 (404)
Q Consensus       182 ~~~~~~l-------------------------------------------------------------------------  188 (404)
                      +..+..+                                                                         
T Consensus       157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~  236 (520)
T 2z7x_B          157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS  236 (520)
T ss_dssp             TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred             cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence            1112221                                                                         


Q ss_pred             ----------CCCCeEecCCCcCcccCCCcc-------------------------------------------------
Q psy12291        189 ----------KYLDFLSLRNNRLSFIRPGLF-------------------------------------------------  209 (404)
Q Consensus       189 ----------~~L~~L~l~~~~~~~~~~~~~-------------------------------------------------  209 (404)
                                ++|++|++++|.+.+..+..+                                                 
T Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~  316 (520)
T 2z7x_B          237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH  316 (520)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred             HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence                      145555555555442222222                                                 


Q ss_pred             ----CCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc--ccccCCCCCcEEECcCCCccc-ccccccc
Q psy12291        210 ----NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA--GSFANLQSLEKLFLYSNNIQE-LHAGTFA  282 (404)
Q Consensus       210 ----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~n~l~~-~~~~~~~  282 (404)
                          ..+++|++|++++|.+....+..+..+++|++|++++|.+..++.  ..+..+++|+.|++++|.++. ++...+.
T Consensus       317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~  396 (520)
T 2z7x_B          317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS  396 (520)
T ss_dssp             CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred             ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence                456677777777777777555667777777777777777775432  346677777788887777777 6666677


Q ss_pred             CCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291        283 GLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       283 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~  346 (404)
                      .+++|++|++++|+++...+..+.  ++|+.|++++|+++.++.... .+++|+.|++++|++.
T Consensus       397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLK  457 (520)
T ss_dssp             CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCC
T ss_pred             cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCC
Confidence            777788888887777654443332  678888888888887766544 7888888888888775

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4e-31  Score=249.87  Aligned_cols=295  Identities=20%  Similarity=0.241  Sum_probs=245.5

Q ss_pred             CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      +..+.+++.++.++.+|. .....++++|++++|.++.++   +.++++|++|++++|.+++++   |..+++|++|+++
T Consensus        42 ~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~  114 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCD  114 (457)
T ss_dssp             TTCCEEECCSSCCCCCTT-GGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECC
T ss_pred             CCCCEEEccCCCcccChh-hcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECC
Confidence            457899999999999873 334568999999999999873   889999999999999999885   6889999999999


Q ss_pred             CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCc-ccccccccccCCccCcEEeccCCCCCCC
Q psy12291        102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRLKLQSNRINQL  180 (404)
Q Consensus       102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~~~l~~~  180 (404)
                      +|.++.++   +..+++|++|++++|.++.++   +..+++|+.|++++|. +..+   .+..+++|+.|++++|.++.+
T Consensus       115 ~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          115 TNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             SSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence            99999885   788999999999999999874   6788999999999994 4444   477889999999999999997


Q ss_pred             CCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCC
Q psy12291        181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL  260 (404)
Q Consensus       181 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l  260 (404)
                      +   +..+++|+.|++++|.++.+   .+..+++|++|++++|.+..++   +..+++|+.|++++|.+..++.   ..+
T Consensus       186 ~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~---~~l  253 (457)
T 3bz5_A          186 D---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDV---STL  253 (457)
T ss_dssp             C---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCC---TTC
T ss_pred             c---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCH---HHC
Confidence            6   67889999999999999876   3788999999999999999875   7788999999999999998874   355


Q ss_pred             CCCcEEECcCCCcccccc--------ccccCCCCCCeeecccccccc--------cCccccCCCCCCcEEeCCCCCCccc
Q psy12291        261 QSLEKLFLYSNNIQELHA--------GTFAGLTNLTALFLNNNLLRY--------LDTKAFEPMLHLKKLQLDSNKLQYL  324 (404)
Q Consensus       261 ~~L~~L~L~~n~l~~~~~--------~~~~~~~~L~~L~l~~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~  324 (404)
                      ++|+.|++++|.++.+..        ..++.+++|++|++++|....        +..-.+..+++|++|++++|+++++
T Consensus       254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l  333 (457)
T 3bz5_A          254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL  333 (457)
T ss_dssp             TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred             CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence            667766666666654432        124567999999999986322        1112356778999999999999997


Q ss_pred             CcccccCCCCCcEEEccCCcccc
Q psy12291        325 ATDSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       325 ~~~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      +   +..+++|+.|++++|.+..
T Consensus       334 ~---l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          334 D---VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             C---CTTCTTCSEEECCSSCCCB
T ss_pred             c---cccCCcCcEEECCCCCCCC
Confidence            3   7889999999999999863

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.8e-32  Score=275.62  Aligned_cols=295  Identities=24%  Similarity=0.306  Sum_probs=248.1

Q ss_pred             eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC-CCcccCccccCCCCCCcEEEccC
Q psy12291         48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN-LIKTLPSTFFKGAIRLTVVQLSY  126 (404)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~  126 (404)
                      +..+.++++++.++.    -.++|++|+|++|.++.+.+..|.++++|++|++++| .+..+++..|.++++|++|++++
T Consensus         7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            568889999998874    3478999999999999998888999999999999999 56678778899999999999999


Q ss_pred             CCCCcCCCccCCCCCCCCEEECCCCcccccc--cccccCCccCcEEeccCCCCCCCCC-CccCCCCCCCeEecCCCcCcc
Q psy12291        127 NAIESLPANVFHDLISLEELDLSQNVLTSIQ--YGTFSGMYSLKRLKLQSNRINQLPP-GIFDDLKYLDFLSLRNNRLSF  203 (404)
Q Consensus       127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~  203 (404)
                      |.+..+.+..|.++++|++|++++|.+....  ...+.++++|++|++++|.++.+.. ..|..+++|++|++++|.++.
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            9999998888999999999999999998643  3348899999999999999988754 568999999999999998765


Q ss_pred             cCCCccCC--------------------------CC------CCCEEECCCCcCCCCChhhh------------------
Q psy12291        204 IRPGLFNY--------------------------FK------HLTFLELSENWISSLNGDEF------------------  233 (404)
Q Consensus       204 ~~~~~~~~--------------------------l~------~L~~L~l~~~~~~~~~~~~~------------------  233 (404)
                      ..+..+..                          ++      .|+.|++++|.+....+..+                  
T Consensus       163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~  242 (844)
T 3j0a_A          163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI  242 (844)
T ss_dssp             CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred             eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence            43332221                          12      27777777775543222111                  


Q ss_pred             ------------------cC--CCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecc
Q psy12291        234 ------------------SQ--LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN  293 (404)
Q Consensus       234 ------------------~~--l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  293 (404)
                                        .+  .++|+.|++++|.+..+++..+..+++|+.|++++|.++.+.+..|.++++|++|+++
T Consensus       243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  322 (844)
T 3j0a_A          243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS  322 (844)
T ss_dssp             CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred             ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence                              11  2578899999998888887788899999999999999999988889999999999999


Q ss_pred             cccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291        294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       294 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~  346 (404)
                      +|+++.+.+..|..+++|+.|++++|.+..+++..+..+++|+.|++++|.+.
T Consensus       323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence            99999988888999999999999999999998888888999999999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.2e-32  Score=263.20  Aligned_cols=301  Identities=23%  Similarity=0.328  Sum_probs=225.2

Q ss_pred             CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      +..+.++..++.++.++... ....++++|++++|.+..+.+.+|.++++|++|++++|.+..+++..|..+++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            34677888888888776542 23457888888888888887777888888888888888888777777777778888888


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCccccccccc-------------------
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGT-------------------  160 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~-------------------  160 (404)
                      ++|.++.++...+.++++|++|++++|.++.+. +..|.++++|++|++++|.+..+.+..                   
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            877777776655777777777777777766543 344566666666666666443221100                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy12291        161 --------------------------------------------------------------------------------  160 (404)
Q Consensus       161 --------------------------------------------------------------------------------  160 (404)
                                                                                                      
T Consensus       188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~  267 (570)
T 2z63_A          188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  267 (570)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred             CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence                                                                                            


Q ss_pred             ----------c-----------------------------------------------------------------cCCc
Q psy12291        161 ----------F-----------------------------------------------------------------SGMY  165 (404)
Q Consensus       161 ----------l-----------------------------------------------------------------~~l~  165 (404)
                                +                                                                 ..++
T Consensus       268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (570)
T 2z63_A          268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP  347 (570)
T ss_dssp             TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred             hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence                      0                                                                 1123


Q ss_pred             cCcEEeccCCCCCC--------------------------CCCCccCCCCCCCeEecCCCcCcccCC-CccCCCCCCCEE
Q psy12291        166 SLKRLKLQSNRINQ--------------------------LPPGIFDDLKYLDFLSLRNNRLSFIRP-GLFNYFKHLTFL  218 (404)
Q Consensus       166 ~L~~L~l~~~~l~~--------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L  218 (404)
                      +|++|++++|.++.                          +++. +..+++|++|++++|.+....+ ..+..+++|++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            33444444443332                          2222 4456667777777776665544 568889999999


Q ss_pred             ECCCCcCCCCChhhhcCCCCCcEEECCCCCCc--ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccccc
Q psy12291        219 ELSENWISSLNGDEFSQLTSLKELHLGQNYIE--TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL  296 (404)
Q Consensus       219 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  296 (404)
                      ++++|.+....+..+..+++|++|++++|.+.  .++ ..+..+++|+.|++++|.++++.+..|..+++|++|++++|+
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            99999999888888999999999999999987  355 478899999999999999999988899999999999999999


Q ss_pred             ccccCccccCCCCCCcEEeCCCCCCccc
Q psy12291        297 LRYLDTKAFEPMLHLKKLQLDSNKLQYL  324 (404)
Q Consensus       297 i~~~~~~~~~~l~~L~~L~l~~n~l~~~  324 (404)
                      ++.+++..+..+++|+.|++++|.+..-
T Consensus       506 l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          506 LKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            9999988999999999999999998864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.1e-31  Score=262.37  Aligned_cols=302  Identities=23%  Similarity=0.283  Sum_probs=250.0

Q ss_pred             CCCceEEecCCCCCccCCCCC-CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQI-IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~-~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      ...+.++.+++.++.+|...+ ...+|++|++++|.|+.+.+++|.++++|++|+|++|+++.++...|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            357899999999999987543 3468999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCccccccccccc-----------------
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTFS-----------------  162 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~l~-----------------  162 (404)
                      ++|.++.+++..|.++++|++|++++|.++.+. +..+..+++|++|++++|.+..+.+..+.                 
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            999999999988999999999999999998764 45567789999999988765432211100                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy12291        163 --------------------------------------------------------------------------------  162 (404)
Q Consensus       163 --------------------------------------------------------------------------------  162 (404)
                                                                                                      
T Consensus       212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~  291 (635)
T 4g8a_A          212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL  291 (635)
T ss_dssp             CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred             cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence                                                                                            


Q ss_pred             -----------------------------------------------------------------------------CCc
Q psy12291        163 -----------------------------------------------------------------------------GMY  165 (404)
Q Consensus       163 -----------------------------------------------------------------------------~l~  165 (404)
                                                                                                   .++
T Consensus       292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~  371 (635)
T 4g8a_A          292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP  371 (635)
T ss_dssp             CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred             cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence                                                                                         012


Q ss_pred             cCcEEeccCCCCCC--------------------------------------------------CCCCccCCCCCCCeEe
Q psy12291        166 SLKRLKLQSNRINQ--------------------------------------------------LPPGIFDDLKYLDFLS  195 (404)
Q Consensus       166 ~L~~L~l~~~~l~~--------------------------------------------------~~~~~~~~l~~L~~L~  195 (404)
                      +|+.|+++.|.+..                                                  .+...|..+++++.++
T Consensus       372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~  451 (635)
T 4g8a_A          372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  451 (635)
T ss_dssp             TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred             ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            23333333332210                                                  0112234456677777


Q ss_pred             cCCCcCcccCCCccCCCCCCCEEECCCCcCC-CCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcc
Q psy12291        196 LRNNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ  274 (404)
Q Consensus       196 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~  274 (404)
                      ++.|.+....+..+..++.++.|++++|.+. ...+..|..+++|++|++++|++..+++..|..+++|+.|+|++|+|+
T Consensus       452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~  531 (635)
T 4g8a_A          452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  531 (635)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence            7777788888888899999999999999743 455677899999999999999999999889999999999999999999


Q ss_pred             ccccccccCCCCCCeeecccccccccCccccCCC-CCCcEEeCCCCCCcc
Q psy12291        275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM-LHLKKLQLDSNKLQY  323 (404)
Q Consensus       275 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~  323 (404)
                      .+++.+|.++++|++|+|++|+++.+.+..+..+ ++|+.|+|++|.+..
T Consensus       532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            9999999999999999999999999999999887 689999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=100.00  E-value=2.2e-31  Score=236.81  Aligned_cols=249  Identities=26%  Similarity=0.354  Sum_probs=180.5

Q ss_pred             cCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCC
Q psy12291        113 FKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD  192 (404)
Q Consensus       113 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~  192 (404)
                      ++++++++.++++++.++.++....   ++++.|++++|.+..+.+..|.++++|++|++++|.++.++..  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            5567777788888777777776542   4677777777777776666677777777777777766655432  3444455


Q ss_pred             eEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCC
Q psy12291        193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN  272 (404)
Q Consensus       193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~  272 (404)
                      +|++                        ++|.+..++ ..+..+++|++|++++|+++.+++..|..+++|+.|++++|.
T Consensus        81 ~L~L------------------------s~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           81 TLDL------------------------SHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             EEEC------------------------CSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             EEEC------------------------CCCcCCcCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence            5544                        444444443 245566777777777777777777677788888888888888


Q ss_pred             ccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcH
Q psy12291        273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAIL  352 (404)
Q Consensus       273 l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~  352 (404)
                      ++.++...|..+++|++|++++|+++.++...|..+++|+.|++++|+++.++.. +...++|+.+++++|||.|+|.+.
T Consensus       136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~C~c~~~  214 (290)
T 1p9a_G          136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEIL  214 (290)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCCSGGGH
T ss_pred             CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCccCcCccH
Confidence            8888777788888888899988888888888888889999999999999988765 445679999999999999999999


Q ss_pred             HHHHHHHhccCccc--------------CCCCeeCCCCCCCCCcccCCCCcCCCCccc
Q psy12291        353 YMARWLRANRRKVW--------------DSKPTCRGPGNLGGKSVEDMSFDDLCEGQW  396 (404)
Q Consensus       353 ~~~~~~~~~~~~~~--------------~~~~~C~~p~~l~~~~l~~~~~~~~C~~~~  396 (404)
                      |+.+|+++....++              ....+|.++.   +.++..... ..|+...
T Consensus       215 ~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~---~~~v~~~~~-~~C~~~~  268 (290)
T 1p9a_G          215 YFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD---KFPVYKYPG-KGCPTLG  268 (290)
T ss_dssp             HHHHHHHHTGGGBCCCCTTCCCSSCCCCGGGSBBTTCT---TCBGGGCCC-TTCCC--
T ss_pred             HHHHHHHhCcccceeeccccccccccCCCCcCEeeCCC---CCceEecCc-CCCCCCC
Confidence            99999987654332              1146677654   556666543 3475543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.3e-32  Score=263.93  Aligned_cols=292  Identities=20%  Similarity=0.234  Sum_probs=213.9

Q ss_pred             EEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCC
Q psy12291         50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI  129 (404)
Q Consensus        50 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  129 (404)
                      .+.+++.++.++.. +.  ++|++|++++|+++++++..|..+++|++|++++|.++.+++..|.++++|++|++++|.+
T Consensus        10 c~~~~~~l~~ip~~-~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           10 CDGRSRSFTSIPSG-LT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             EECTTSCCSSCCSC-CC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcccccccc-CC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            67888889888754 32  7899999999999999888899999999999999999999988899999999999999999


Q ss_pred             CcCCCccCCCCCCCCEEECCCCcccccc-cccccCCccCcEEeccCCC-CCCCCCCccCCCCCCCeEecCCCcCcccCCC
Q psy12291        130 ESLPANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSFIRPG  207 (404)
Q Consensus       130 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  207 (404)
                      +.+++..|.++++|++|++++|.+..+. +..+.++++|++|++++|. +..+++..|..+++|++|++++|.++...+.
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            9999888899999999999999998753 4578899999999999998 6778877889999999999999999876666


Q ss_pred             ccCCC------------------------CCCCEEECCCCcCCCCCh---hhh---------------------------
Q psy12291        208 LFNYF------------------------KHLTFLELSENWISSLNG---DEF---------------------------  233 (404)
Q Consensus       208 ~~~~l------------------------~~L~~L~l~~~~~~~~~~---~~~---------------------------  233 (404)
                      .+..+                        ++|++|++++|.+...+.   ...                           
T Consensus       167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  246 (549)
T 2z81_A          167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL  246 (549)
T ss_dssp             TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred             hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence            66554                        455555555555544210   000                           


Q ss_pred             ------------------------------------------------------------cCCCCCcEEECCCCCCcccC
Q psy12291        234 ------------------------------------------------------------SQLTSLKELHLGQNYIETIP  253 (404)
Q Consensus       234 ------------------------------------------------------------~~l~~L~~L~l~~~~l~~~~  253 (404)
                                                                                  ...++|+.|++++|.+..+|
T Consensus       247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip  326 (549)
T 2z81_A          247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP  326 (549)
T ss_dssp             GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred             hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence                                                                        00112333334444444344


Q ss_pred             cccccCCCCCcEEECcCCCcccccc---ccccCCCCCCeeecccccccccCc--cccCCCCCCcEEeCCCCCCcccCccc
Q psy12291        254 AGSFANLQSLEKLFLYSNNIQELHA---GTFAGLTNLTALFLNNNLLRYLDT--KAFEPMLHLKKLQLDSNKLQYLATDS  328 (404)
Q Consensus       254 ~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~  328 (404)
                      ...+..+++|+.|++++|.+.+..+   ..++.+++|++|++++|+++.++.  ..+..+++|++|++++|+++.++. .
T Consensus       327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~  405 (549)
T 2z81_A          327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-S  405 (549)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-C
T ss_pred             HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-h
Confidence            3333456677777777777665321   235566777777777777766543  446666777777777777776654 3


Q ss_pred             ccCCCCCcEEEccCCcc
Q psy12291        329 LSLLPNLITLKLAKNPW  345 (404)
Q Consensus       329 ~~~l~~L~~l~l~~Np~  345 (404)
                      +..+++|+.|++++|.+
T Consensus       406 ~~~~~~L~~L~Ls~N~l  422 (549)
T 2z81_A          406 CQWPEKMRFLNLSSTGI  422 (549)
T ss_dssp             CCCCTTCCEEECTTSCC
T ss_pred             hcccccccEEECCCCCc
Confidence            45566666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.97  E-value=1.1e-30  Score=253.89  Aligned_cols=283  Identities=23%  Similarity=0.245  Sum_probs=191.9

Q ss_pred             CcccCCCCCCCC---CCCCCceecC-CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEc
Q psy12291          1 WIKSDKEDSWYR---CCEGPCRCRP-EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL   76 (404)
Q Consensus         1 ~~~~~~~~~w~~---~~~~~c~c~~-~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l   76 (404)
                      |.....+..|..   .||..|.|.. ..+.++|.+++++.+|..  ++.++++|++++|.++.++.    .+++|++|++
T Consensus        15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~--l~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L   88 (622)
T 3g06_A           15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDC--LPAHITTLVIPDNNLTSLPA----LPPELRTLEV   88 (622)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSC--CCTTCSEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred             HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCccChh--hCCCCcEEEecCCCCCCCCC----cCCCCCEEEc
Confidence            444444455532   3445566654 378899999999999876  55789999999999887764    5688899999


Q ss_pred             cCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccccc
Q psy12291         77 RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI  156 (404)
Q Consensus        77 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~  156 (404)
                      ++|+++.++.    .+++|++|++++|.++.++.    .+++|+.|++++|.++.++..    +++|++|++++|.+..+
T Consensus        89 s~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l  156 (622)
T 3g06_A           89 SGNQLTSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASL  156 (622)
T ss_dssp             CSCCCSCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCc
Confidence            9998888876    56888899999988888876    467888888888888887653    36788888888877765


Q ss_pred             ccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCC
Q psy12291        157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQL  236 (404)
Q Consensus       157 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  236 (404)
                      +.    ...+|+.|++++|.++.++    ..+++|+.|++++|.++.++.    .+++|+.|++++|.+..++.    .+
T Consensus       157 ~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~  220 (622)
T 3g06_A          157 PA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LP  220 (622)
T ss_dssp             CC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CC
T ss_pred             CC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CC
Confidence            42    2457778888888777766    234677777777777765432    23566666666666665542    23


Q ss_pred             CCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeC
Q psy12291        237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQL  316 (404)
Q Consensus       237 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  316 (404)
                      ++|+.|++++|.++.++    ..+++|+.|++++|.++.++.    .+++|++|++++|+++.++ ..+..+++|+.|+|
T Consensus       221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEe
Confidence            55666666666666555    234566666666666665543    3455666666666666553 33555566666666


Q ss_pred             CCCCCcccCc
Q psy12291        317 DSNKLQYLAT  326 (404)
Q Consensus       317 ~~n~l~~~~~  326 (404)
                      ++|.+++..+
T Consensus       292 ~~N~l~~~~~  301 (622)
T 3g06_A          292 EGNPLSERTL  301 (622)
T ss_dssp             CSCCCCHHHH
T ss_pred             cCCCCCCcCH
Confidence            6666655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1.8e-29  Score=238.55  Aligned_cols=274  Identities=23%  Similarity=0.240  Sum_probs=228.5

Q ss_pred             CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL  124 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  124 (404)
                      ..+++|++++|.+++++  .+..+++|++|++++|++++++   +..+++|++|++++|.++.++   +..+++|++|++
T Consensus        42 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L  113 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNC  113 (457)
T ss_dssp             TTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEEC
Confidence            57999999999999874  6899999999999999999985   688999999999999999885   789999999999


Q ss_pred             cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCC-CCCCCCCccCCCCCCCeEecCCCcCcc
Q psy12291        125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNRLSF  203 (404)
Q Consensus       125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~  203 (404)
                      ++|.++.++   +..+++|+.|++++|.+..+.   +..+++|++|++++|. +..+   .+..+++|++|++++|.++.
T Consensus       114 ~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          114 DTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC
T ss_pred             CCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce
Confidence            999999875   678999999999999998863   7788999999999994 4444   26788999999999999998


Q ss_pred             cCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccC
Q psy12291        204 IRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG  283 (404)
Q Consensus       204 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  283 (404)
                      ++   +..+++|+.|++++|.+..++   +..+++|+.|++++|.+..++   +..+++|+.|++++|.++.++..   .
T Consensus       185 l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~---~  252 (457)
T 3bz5_A          185 LD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVS---T  252 (457)
T ss_dssp             CC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCT---T
T ss_pred             ec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHH---H
Confidence            64   788999999999999999873   788999999999999999986   67889999999999999998754   4


Q ss_pred             CCCCCeeecccccccccCc--------cccCCCCCCcEEeCCCCCCcc-cCc-------ccccCCCCCcEEEccCCcccc
Q psy12291        284 LTNLTALFLNNNLLRYLDT--------KAFEPMLHLKKLQLDSNKLQY-LAT-------DSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       284 ~~~L~~L~l~~n~i~~~~~--------~~~~~l~~L~~L~l~~n~l~~-~~~-------~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      +++|+.|++++|+++.+..        -.+..+++|+.|++++|...+ ++.       -.+..+++|+.|++++|.+..
T Consensus       253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE  332 (457)
T ss_dssp             CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred             CCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence            4555555555554443321        124567999999999996433 211       125667899999999998754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=9e-32  Score=242.30  Aligned_cols=253  Identities=18%  Similarity=0.195  Sum_probs=175.7

Q ss_pred             CCCCEEEccCCcCcc--cCcccccCCCCCCEEeCCC-CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCE
Q psy12291         69 YKLTELKLRKNHLSE--LPGKLFISTINLSTMDLSQ-NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEE  145 (404)
Q Consensus        69 ~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  145 (404)
                      .+++.|+++++.+.+  ..+..|..+++|++|++++ |.+....+..|..+++|++|++++|.++...+..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            468899999998885  3344578888899999985 7776444444778888888888888887554555677778888


Q ss_pred             EECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCC-CCCeEecCCCcCcccCCCccCCCCCCCEEECCCCc
Q psy12291        146 LDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLK-YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENW  224 (404)
Q Consensus       146 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  224 (404)
                      |++++|.+....+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.++..                    
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--------------------  189 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK--------------------  189 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE--------------------
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc--------------------
Confidence            88888777765556666677777777777766633333344444 555555555554433                    


Q ss_pred             CCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccc
Q psy12291        225 ISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKA  304 (404)
Q Consensus       225 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  304 (404)
                          .+..+..+. |+.|++++|.+....+..+..+++|+.|++++|.++...+. +..+++|++|++++|+++...+..
T Consensus       190 ----~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          190 ----IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             ----CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred             ----CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence                334444444 66666666666655555666677777777777777655443 566778888888888887666677


Q ss_pred             cCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccc
Q psy12291        305 FEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCD  348 (404)
Q Consensus       305 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~  348 (404)
                      +..+++|++|++++|++++..+.. ..+++|+.+++.+||+.|+
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            777888888888888887654443 6788888999999998886

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=5.8e-29  Score=234.85  Aligned_cols=288  Identities=26%  Similarity=0.343  Sum_probs=173.1

Q ss_pred             CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      +..+.++..++.++.+|.   .+.++++|++++|.+..+...    .++|++|++++|++++++  .|..+++|++|+++
T Consensus        91 ~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           91 PHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD  161 (454)
T ss_dssp             TTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred             CCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECC
Confidence            346667777777777664   235677777777776654321    157888888888888877  27788888888888


Q ss_pred             CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC
Q psy12291        102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP  181 (404)
Q Consensus       102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~  181 (404)
                      +|.++.+|..    ..+|++|++++|.++.++.  +.++++|+.|++++|.+..++..    .++|++|++++|.+..++
T Consensus       162 ~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp  231 (454)
T 1jl5_A          162 NNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP  231 (454)
T ss_dssp             SSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC
T ss_pred             CCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc
Confidence            8888877653    3478888888888887763  67788888888888877765421    247788888888777666


Q ss_pred             CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccc-----
Q psy12291        182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS-----  256 (404)
Q Consensus       182 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-----  256 (404)
                      .  +..+++|++|++++|+++.++.    ..++|++|++++|.+..++.    .+++|++|++++|.+..++...     
T Consensus       232 ~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~~~~~~L~~  301 (454)
T 1jl5_A          232 E--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSELPPNLYY  301 (454)
T ss_dssp             C--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred             c--cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCCccCcccCcCCcCCE
Confidence            3  6777778888888777766532    23667777777777766542    1256666666666665543210     


Q ss_pred             ----------ccCC-CCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291        257 ----------FANL-QSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       257 ----------~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  325 (404)
                                +..+ ++|+.|++++|.++.++.    .+++|++|++++|+++.++.    .+++|++|++++|++++++
T Consensus       302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~  373 (454)
T 1jl5_A          302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFP  373 (454)
T ss_dssp             EECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC
T ss_pred             EECcCCcCCcccCCcCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCC
Confidence                      0011 355555555555555432    13556666666666655543    2456666666666665522


Q ss_pred             --cccccCC-------------CCCcEEEccCCccc
Q psy12291        326 --TDSLSLL-------------PNLITLKLAKNPWH  346 (404)
Q Consensus       326 --~~~~~~l-------------~~L~~l~l~~Np~~  346 (404)
                        +..+..+             ++|+.|++++|++.
T Consensus       374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             CCCTTCCEEECCC-----------------------
T ss_pred             CChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence              2233333             55666666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.1e-30  Score=235.28  Aligned_cols=262  Identities=18%  Similarity=0.182  Sum_probs=200.3

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcc--cChhhcCCCCCCCEEEccC-CcCcccCcccccCCCCCCEEe
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLST--LSKDAFTGLYKLTELKLRK-NHLSELPGKLFISTINLSTMD   99 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~   99 (404)
                      .+..|.|....         ....+++|+++++.+.+  ..+..|.++++|++|++++ |.+.+..+..|..+++|++|+
T Consensus        37 ~w~gv~C~~~~---------~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~  107 (313)
T 1ogq_A           37 TWLGVLCDTDT---------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY  107 (313)
T ss_dssp             CSTTEEECCSS---------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEE
T ss_pred             CCcceEeCCCC---------CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEE
Confidence            47889996421         23479999999999987  5667899999999999995 888865566689999999999


Q ss_pred             CCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCc-cCcEEeccCCCCC
Q psy12291        100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMY-SLKRLKLQSNRIN  178 (404)
Q Consensus       100 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L~l~~~~l~  178 (404)
                      +++|.++...+..|..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..++ +|++|++++|.++
T Consensus       108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            999999855555688999999999999999966666678899999999999999877778888887 9999999999998


Q ss_pred             CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccccc
Q psy12291        179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA  258 (404)
Q Consensus       179 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  258 (404)
                      +..+..+..++ |++|++++|.++...+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+....+..+.
T Consensus       188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~  265 (313)
T 1ogq_A          188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence            76666677776 88899988888877777777777777777777777655433 55566666666666666643333555


Q ss_pred             CCCCCcEEECcCCCccccccccccCCCCCCeeeccccc
Q psy12291        259 NLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL  296 (404)
Q Consensus       259 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  296 (404)
                      .+++|+.|++++|.+++..+.. ..+++|+++++++|.
T Consensus       266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            6666666666666665433322 445555666665554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.97  E-value=2.4e-29  Score=221.75  Aligned_cols=211  Identities=35%  Similarity=0.581  Sum_probs=180.8

Q ss_pred             CCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCC
Q psy12291         15 EGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTIN   94 (404)
Q Consensus        15 ~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~   94 (404)
                      +..|.|.+..+.++|.+++++.+|..  ++.++++|++++|.+..+.+.+|.++++|++|++++|.++.++...|..+++
T Consensus         9 ~~~C~c~~~~~~l~~~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~   86 (270)
T 2o6q_A            9 GGVCSCNNNKNSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN   86 (270)
T ss_dssp             TCSBEEETTTTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred             CCCCEeCCCCCEEEccCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence            46799998899999999999999976  6788999999999999998888999999999999999999999988899999


Q ss_pred             CCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccC
Q psy12291         95 LSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQS  174 (404)
Q Consensus        95 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  174 (404)
                      |++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.+..+....|..+++|++|++++
T Consensus        87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            99999999999999888888899999999999999988888888888888888888888888777778888888888888


Q ss_pred             CCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCC
Q psy12291        175 NRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS  227 (404)
Q Consensus       175 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  227 (404)
                      |.++.+++..|..+++|++|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            88888877777777778888877777777666666666677777777666543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=3.1e-28  Score=229.87  Aligned_cols=284  Identities=24%  Similarity=0.286  Sum_probs=233.8

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      ..+.+++.+++++.+|.   .+.++++|++++|.+++++.    .+++|++|++++|++.+++..    .++|++|++++
T Consensus        72 ~l~~L~l~~~~l~~lp~---~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~  140 (454)
T 1jl5_A           72 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSN  140 (454)
T ss_dssp             TCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCS
T ss_pred             CCCEEEecCCccccCCC---CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcC
Confidence            36889999999999987   56799999999999998753    247999999999999987642    37899999999


Q ss_pred             CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCC
Q psy12291        103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP  182 (404)
Q Consensus       103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~  182 (404)
                      |.++.+|.  |.++++|++|++++|.++.++..    ..+|++|++++|.+..++  .+.++++|++|++++|.+++++.
T Consensus       141 n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          141 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             SCCSSCCC--CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCCcc--cCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC
Confidence            99999883  89999999999999999987753    359999999999999875  58899999999999999998775


Q ss_pred             CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCC
Q psy12291        183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQS  262 (404)
Q Consensus       183 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~  262 (404)
                      .    .++|++|++++|.++.++  .+..+++|++|++++|.+..++.    .+++|+.|++++|.+..++..    +++
T Consensus       213 ~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~  278 (454)
T 1jl5_A          213 L----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQS  278 (454)
T ss_dssp             C----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTT
T ss_pred             C----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCc
Confidence            3    268999999999998665  38899999999999999988763    347999999999999987752    367


Q ss_pred             CcEEECcCCCccccccc---------------cccCC-CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc
Q psy12291        263 LEKLFLYSNNIQELHAG---------------TFAGL-TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       263 L~~L~L~~n~l~~~~~~---------------~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  326 (404)
                      |+.|++++|.++.++..               .+..+ ++|++|++++|+++.++..    +++|+.|++++|+++.++.
T Consensus       279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~  354 (454)
T 1jl5_A          279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE  354 (454)
T ss_dssp             CCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC
T ss_pred             CCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc
Confidence            88888888877764321               01122 4777777777777765432    4788999999999888766


Q ss_pred             ccccCCCCCcEEEccCCcccc
Q psy12291        327 DSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       327 ~~~~~l~~L~~l~l~~Np~~C  347 (404)
                          .+++|+.|++++|++..
T Consensus       355 ----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          355 ----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             ----CCTTCCEEECCSSCCSS
T ss_pred             ----hhhhccEEECCCCCCCc
Confidence                46889999999999866

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.97  E-value=3.7e-30  Score=222.83  Aligned_cols=225  Identities=21%  Similarity=0.395  Sum_probs=179.1

Q ss_pred             CCCCCCceecC-CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-CcccCcccc
Q psy12291         12 RCCEGPCRCRP-EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH-LSELPGKLF   89 (404)
Q Consensus        12 ~~~~~~c~c~~-~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~   89 (404)
                      .|||..|.|.. ....++|.+  ++.+|.   .+.++++|++++|+++.+.+..|.++++|++|++++|. ++.++...|
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~--l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f   76 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKD--IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF   76 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECS--CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE
T ss_pred             CCCCCCCeeCCCCcceeEccC--ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc
Confidence            57899999988 777889987  999997   67799999999999999998889999999999999997 999998889


Q ss_pred             cCCCCCCEEeCCC-CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCC---EEECCCC-cccccccccccCC
Q psy12291         90 ISTINLSTMDLSQ-NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE---ELDLSQN-VLTSIQYGTFSGM  164 (404)
Q Consensus        90 ~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~l~~l  164 (404)
                      ..+++|++|++++ |.++.+++..|.++++|++|++++|.++.++.  |..+++|+   .|++++| .+..+.+..|.++
T Consensus        77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l  154 (239)
T 2xwt_C           77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL  154 (239)
T ss_dssp             ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred             CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccch
Confidence            9999999999998 99999998889999999999999999988876  67777777   8888888 7887777777778


Q ss_pred             ccCc-EEeccCCCCCCCCCCccCCCCCCCeEecCCCc-CcccCCCccCCC-CCCCEEECCCCcCCCCChhhhcCCCCCcE
Q psy12291        165 YSLK-RLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR-LSFIRPGLFNYF-KHLTFLELSENWISSLNGDEFSQLTSLKE  241 (404)
Q Consensus       165 ~~L~-~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  241 (404)
                      ++|+ .|++++|.++.++...|.. ++|+.|++++|+ ++.+++..|..+ ++|+.|++++|.+..++..   .+++|+.
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~  230 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKE  230 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSE
T ss_pred             hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCce
Confidence            8888 8888888877777666655 667777777773 666655556555 5666666666655555432   3345555


Q ss_pred             EECCCC
Q psy12291        242 LHLGQN  247 (404)
Q Consensus       242 L~l~~~  247 (404)
                      |+++++
T Consensus       231 L~l~~~  236 (239)
T 2xwt_C          231 LIARNT  236 (239)
T ss_dssp             EECTTC
T ss_pred             eeccCc
Confidence            555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.97  E-value=6.4e-30  Score=217.98  Aligned_cols=201  Identities=31%  Similarity=0.503  Sum_probs=160.8

Q ss_pred             CeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCC
Q psy12291        192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN  271 (404)
Q Consensus       192 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n  271 (404)
                      +.++++++.++.++...   .++++.|++++|.+..+++..|..+++|+.|++++|.+..+.+..|..+++|+.|+|++|
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            34455555555443321   145666677777666666666777778888888888888776667888888888888888


Q ss_pred             CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCc
Q psy12291        272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI  351 (404)
Q Consensus       272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~  351 (404)
                      .++.++...|.++++|++|+|++|+++.+.+..|..+++|+.|+|++|+++.+++..+..+++|+.|++++|||.|||.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            88888888888889999999999999998888899999999999999999999988899999999999999999999999


Q ss_pred             HHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCCCCcccc
Q psy12291        352 LYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCEGQWA  397 (404)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~C~~~~~  397 (404)
                      .|+..|+......  ....+|++|+.++|+.+.+++.+++...+.+
T Consensus       171 ~~l~~~l~~~~~~--~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~~  214 (220)
T 2v9t_B          171 KWLADYLHTNPIE--TSGARCTSPRRLANKRIGQIKSKKFRCSAAA  214 (220)
T ss_dssp             HHHHHHHHHCCCB--CSCCBEEESGGGTTCBGGGSCGGGCCC----
T ss_pred             HHHHHHHHhCCCC--ccCCCcCCchHHcCCchhhCCHHHCcCcccc
Confidence            9999999876533  3478999999999999999999998443333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.97  E-value=3.2e-28  Score=236.68  Aligned_cols=258  Identities=27%  Similarity=0.279  Sum_probs=225.8

Q ss_pred             CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS  125 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  125 (404)
                      +++.|+++++.++.++.. +.  ++|+.|++++|.++.++.    .+++|++|++++|.++.+|.    .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSC-CC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChh-hC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence            589999999999988643 33  799999999999999887    47899999999999999887    67899999999


Q ss_pred             CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccC
Q psy12291        126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR  205 (404)
Q Consensus       126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~  205 (404)
                      +|.++.++.    .+++|+.|++++|.+..++.    .+++|++|++++|.++.++.    .+++|+.|++++|.++.++
T Consensus       110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             SCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc
Confidence            999999877    46799999999999988764    24799999999999998874    3478999999999999875


Q ss_pred             CCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCC
Q psy12291        206 PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT  285 (404)
Q Consensus       206 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  285 (404)
                          ..+++|+.|++++|.+..++.    .+++|+.|++++|.+..++.    .+++|+.|++++|.++.++    ..++
T Consensus       178 ----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~  241 (622)
T 3g06_A          178 ----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPS  241 (622)
T ss_dssp             ----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred             ----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCC
Confidence                457899999999999998763    34799999999999998875    2489999999999999986    4568


Q ss_pred             CCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcccc
Q psy12291        286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       286 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      +|++|++++|+++.++.    .+++|+.|+|++|+++.++. .+..+++|+.|++++|++..
T Consensus       242 ~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          242 ELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCH
T ss_pred             cCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCC
Confidence            99999999999998876    56899999999999998865 58899999999999999964

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.97  E-value=1.4e-28  Score=214.36  Aligned_cols=211  Identities=32%  Similarity=0.552  Sum_probs=182.1

Q ss_pred             cCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291        166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG  245 (404)
Q Consensus       166 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  245 (404)
                      ..++++++++.++.+|....   ++++.|++++|.++.+.+..+..+++|++|++++|.+..+++..+..+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            45678888888888776532   578888888888888877778888889999999998888887788889999999999


Q ss_pred             CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291        246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  325 (404)
                      +|.+..++...+..+++|+.|++++|.++.++...|..+++|++|++++|+++.+++..|..+++|++|+|++|+++.++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            99999988878889999999999999999998888899999999999999999998888999999999999999999999


Q ss_pred             cccccCCCCCcEEEccCCccccc-cCcHHHHHHHHhccCcccC----------CCCeeCCCCCCC
Q psy12291        326 TDSLSLLPNLITLKLAKNPWHCD-CAILYMARWLRANRRKVWD----------SKPTCRGPGNLG  379 (404)
Q Consensus       326 ~~~~~~l~~L~~l~l~~Np~~C~-c~~~~~~~~~~~~~~~~~~----------~~~~C~~p~~l~  379 (404)
                      +..+..+++|+.|++++|+|.|+ |.+.|+..|+......+.+          ....|+.+..++
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~  236 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVR  236 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTSCBGG
T ss_pred             HHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCCcEEe
Confidence            98899999999999999999999 9999999999877554422          246677654443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.96  E-value=4.7e-29  Score=212.61  Aligned_cols=202  Identities=25%  Similarity=0.488  Sum_probs=163.1

Q ss_pred             eEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC-hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCC
Q psy12291        193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN-GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN  271 (404)
Q Consensus       193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n  271 (404)
                      .++++++.++.++...   .+.+++|++++|.+..++ ...|..+++|++|++++|.+..+++..|..+++|+.|+|++|
T Consensus        15 ~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            4555555554443211   234566666666666653 245678888888888888888888778888999999999999


Q ss_pred             CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCc
Q psy12291        272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAI  351 (404)
Q Consensus       272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~  351 (404)
                      .++.+++..|.++++|++|+|++|+++.+.+..|..+++|+.|+|++|+++++++..+..+++|+.|++++|||.|+|.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999888899999999999999999999888999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCC-CCcccccc
Q psy12291        352 LYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDL-CEGQWASM  399 (404)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~-C~~~~~~~  399 (404)
                      .|+..|+.....  ......|+.|..++|+++.+++...+ |..+.+.+
T Consensus       172 ~~l~~~~~~~~~--~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~~~~~~  218 (220)
T 2v70_A          172 AWLGEWLRKKRI--VTGNPRCQKPYFLKEIPIQDVAIQDFTCDDAHHHH  218 (220)
T ss_dssp             HHHHHHHHHSCC--BCCCCEEEESGGGTTEEGGGSCGGGCCCCC-----
T ss_pred             HHHHHHHHhcCc--cccCCccCCChHHCCCChhhCCHHHcccccccccC
Confidence            999999987543  23578999999999999999998886 66555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=7.4e-30  Score=230.38  Aligned_cols=248  Identities=23%  Similarity=0.279  Sum_probs=166.6

Q ss_pred             CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291         70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS  149 (404)
Q Consensus        70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  149 (404)
                      .++..+++.+.+...+...+..+++|++|++++|.++.+++..|..+++|++|++++|.++.+++  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            34555666666666655666666677777777777777766667777777777777777665544  5566677777777


Q ss_pred             CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291        150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN  229 (404)
Q Consensus       150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  229 (404)
                      +|.+..+..     .++|++|++++|.++.++..                           .+++|++|++++|.+..+.
T Consensus        89 ~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~~~~  136 (317)
T 3o53_A           89 NNYVQELLV-----GPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITMLR  136 (317)
T ss_dssp             SSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCCSGG
T ss_pred             CCccccccC-----CCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCCCcc
Confidence            666654431     24555555555555444322                           1344556666666665555


Q ss_pred             hhhhcCCCCCcEEECCCCCCcccCcccc-cCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCC
Q psy12291        230 GDEFSQLTSLKELHLGQNYIETIPAGSF-ANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM  308 (404)
Q Consensus       230 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  308 (404)
                      +..+..+++|++|++++|.+..++...+ ..+++|+.|++++|.++.++..  ..+++|++|++++|+++.+++. +..+
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l  213 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSA  213 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGG
T ss_pred             chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hccc
Confidence            5556666677777777777766554333 3567777777777777776432  3478888888888888877655 6777


Q ss_pred             CCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHH
Q psy12291        309 LHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA  355 (404)
Q Consensus       309 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~  355 (404)
                      ++|+.|++++|+++.++. .+..+++|+.|++++|++.|+|...++.
T Consensus       214 ~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~  259 (317)
T 3o53_A          214 AGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (317)
T ss_dssp             TTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred             CcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence            888899999998888765 4778889999999999999886554444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=2.6e-30  Score=233.41  Aligned_cols=258  Identities=19%  Similarity=0.207  Sum_probs=181.0

Q ss_pred             CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS  125 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  125 (404)
                      .++..+++.+.+.......+..+++|++|++++|++..+++..|..+++|++|++++|.++.+++  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            46777888888887777777888899999999999999998889999999999999999988776  8899999999999


Q ss_pred             CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccC
Q psy12291        126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIR  205 (404)
Q Consensus       126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~  205 (404)
                      +|.++.++.     .++|+.|++++|.+..+....   +++|++|++++|.++.+++..+..+++|++|++++|.++.+.
T Consensus        89 ~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQELLV-----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEEEE-----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCccccccC-----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            999987663     379999999999998876544   568999999999999887766777777888888777776654


Q ss_pred             CCcc-CCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291        206 PGLF-NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL  284 (404)
Q Consensus       206 ~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  284 (404)
                      +..+ ..+++|++|++++|.+..                        ++.  ...+++|+.|++++|.++.+++. +..+
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l  213 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYD------------------------VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSA  213 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCE------------------------EEC--CCCCTTCCEEECCSSCCCEECGG-GGGG
T ss_pred             HHHHhhccCcCCEEECCCCcCcc------------------------ccc--ccccccCCEEECCCCcCCcchhh-hccc
Confidence            4433 234555555555555444                        432  11244555555555555554433 4445


Q ss_pred             CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCc-ccCcccccCCCCCcEEEcc
Q psy12291        285 TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ-YLATDSLSLLPNLITLKLA  341 (404)
Q Consensus       285 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l~  341 (404)
                      ++|++|++++|+++.++. .+..+++|+.|++++|++. ...+..+..+++|+.+++.
T Consensus       214 ~~L~~L~L~~N~l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          214 AGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CcccEEECcCCcccchhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            555555555555555432 3445555555555555555 3333444455555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=4.7e-29  Score=228.79  Aligned_cols=257  Identities=20%  Similarity=0.264  Sum_probs=199.5

Q ss_pred             CCceEEecCCCCCccCCC-CCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         23 EIHTLSCWKQDMEELPFD-QIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~-~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      ..+.++..++.++.+|.. .....++++|++++|.++.+.+.+|.++++|++|++++|+++.++...|..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            567899999999999874 3345689999999999999988899999999999999999999999888999999999999


Q ss_pred             CCCCcccCc-cccCCCCCCcEEEccCC-CCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291        102 QNLIKTLPS-TFFKGAIRLTVVQLSYN-AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ  179 (404)
Q Consensus       102 ~n~l~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  179 (404)
                      +|.++.++. ..|..+++|++|++++| .+..++...|.++++|+.|++++|.+....+..+..+++|++|++++|.++.
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            999999988 67999999999999999 5888888888999999999999999999988899999999999999999988


Q ss_pred             CCCCccCCCCCCCeEecCCCcCcccCCCccC---CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccc
Q psy12291        180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN---YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS  256 (404)
Q Consensus       180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  256 (404)
                      ++...+..+++|+.|++++|.++......+.   ....++.+++..+.+..                   +.+..++. .
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~-------------------~~l~~l~~-~  272 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD-------------------ESLFQVMK-L  272 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH-------------------HHHHHHHH-H
T ss_pred             chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC-------------------cchhhhHH-H
Confidence            7766666688999999999988765443222   22334444444433322                   11112222 3


Q ss_pred             ccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccc
Q psy12291        257 FANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY  299 (404)
Q Consensus       257 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  299 (404)
                      +..+++|+.|++++|.++.++...|..+++|++|++++|.+..
T Consensus       273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            4455566666666666665555555556666666666665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.96  E-value=6.5e-28  Score=220.65  Aligned_cols=248  Identities=22%  Similarity=0.332  Sum_probs=194.2

Q ss_pred             CC-CCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc-ccCcccccC
Q psy12291         14 CE-GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFIS   91 (404)
Q Consensus        14 ~~-~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~   91 (404)
                      || +.|+|..  +.++|.++++++||.+  +|.++++|++++|+|+.+++++|.++++|++|+|++|++. .++..+|.+
T Consensus         2 Cp~~~C~C~~--~~v~C~~~~Lt~iP~~--l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~   77 (350)
T 4ay9_X            2 CHHRICHCSN--RVFLCQESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN   77 (350)
T ss_dssp             CCCSSSEEET--TEEEEESTTCCSCCTT--CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred             CCCCccEeeC--CEEEecCCCCCccCcC--cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence            45 4599974  6899999999999986  6889999999999999999999999999999999999974 688888999


Q ss_pred             CCCCCE-EeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCC-CcccccccccccCCc-cCc
Q psy12291         92 TINLST-MDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQ-NVLTSIQYGTFSGMY-SLK  168 (404)
Q Consensus        92 ~~~L~~-L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~l~~l~-~L~  168 (404)
                      ++++++ +.++.|+++.+++..|..+++|++|++++|.++.++...+....++..|++.+ +.+..+....|..+. .++
T Consensus        78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~  157 (350)
T 4ay9_X           78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV  157 (350)
T ss_dssp             CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred             chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence            988876 56667899999988899999999999999999998887776777788888855 577777777777664 588


Q ss_pred             EEeccCCCCCCCCCCccCCCCCCCeEecC-CCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCC
Q psy12291        169 RLKLQSNRINQLPPGIFDDLKYLDFLSLR-NNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN  247 (404)
Q Consensus       169 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  247 (404)
                      .|++++|.++.+++..|. ..+|+.+.+. +|.++.+++..|..+++|++|++++|.++.++...+.   +|+.|.+.++
T Consensus       158 ~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~  233 (350)
T 4ay9_X          158 ILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARST  233 (350)
T ss_dssp             EEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTC
T ss_pred             hhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccC
Confidence            889999888888877764 3568888876 4667777777777777777777777777777654443   4444444333


Q ss_pred             -CCcccCcccccCCCCCcEEECcCC
Q psy12291        248 -YIETIPAGSFANLQSLEKLFLYSN  271 (404)
Q Consensus       248 -~l~~~~~~~~~~l~~L~~L~L~~n  271 (404)
                       .+..+|.  +..+++|+.+++.++
T Consensus       234 ~~l~~lP~--l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          234 YNLKKLPT--LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCCC--TTTCCSCCEEECSCH
T ss_pred             CCcCcCCC--chhCcChhhCcCCCC
Confidence             4455553  556666777666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=7.6e-29  Score=236.30  Aligned_cols=234  Identities=22%  Similarity=0.260  Sum_probs=113.7

Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ  173 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  173 (404)
                      +|++|++++|.++.+++..|..+++|++|++++|.++.+++  +..+++|+.|++++|.+..+++     .++|+.|+++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~  107 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA  107 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence            45555555555555544445555555555555555544333  4455555555555555544332     1455555555


Q ss_pred             CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhc-CCCCCcEEECCCCCCccc
Q psy12291        174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFS-QLTSLKELHLGQNYIETI  252 (404)
Q Consensus       174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~  252 (404)
                      +|.++.+++.   .+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+. .+++|+.|++++|.+..+
T Consensus       108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence            5555554432   234455555555555554444444455555555555555544433333 455555555555555554


Q ss_pred             CcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCc-ccCcccccC
Q psy12291        253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ-YLATDSLSL  331 (404)
Q Consensus       253 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~  331 (404)
                      +.  ...+++|+.|+|++|.++.+++. +..+++|+.|++++|+++.++. .+..+++|+.|++++|.+. +..+..+..
T Consensus       185 ~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~l~~N~l~c~~~~~~~~~  260 (487)
T 3oja_A          185 KG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSK  260 (487)
T ss_dssp             EC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred             cc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence            33  22345555555555555554443 4444555555555555544422 2344444455555544444 122223334


Q ss_pred             CCCCcEEEcc
Q psy12291        332 LPNLITLKLA  341 (404)
Q Consensus       332 l~~L~~l~l~  341 (404)
                      ++.++.+++.
T Consensus       261 l~~L~~l~~~  270 (487)
T 3oja_A          261 NQRVQTVAKQ  270 (487)
T ss_dssp             CHHHHHHHHH
T ss_pred             CCCCcEEecc
Confidence            4444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=1.4e-29  Score=228.08  Aligned_cols=250  Identities=18%  Similarity=0.151  Sum_probs=151.3

Q ss_pred             hcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcc--cCcccc------CCCCCCcEEEccCCCCCc-CCC
Q psy12291         64 AFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT--LPSTFF------KGAIRLTVVQLSYNAIES-LPA  134 (404)
Q Consensus        64 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~------~~~~~L~~L~l~~n~l~~-~~~  134 (404)
                      .+.+.++|+.|++++|.+ .+|......   |++|++++|.++.  ++....      .++++|++|++++|.++. ++.
T Consensus        38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            356667888888998888 777654322   8888888888754  333211      157888899998888874 444


Q ss_pred             ccC-CCCCCCCEEECCCCcccccccccccCC-----ccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc---C
Q psy12291        135 NVF-HDLISLEELDLSQNVLTSIQYGTFSGM-----YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI---R  205 (404)
Q Consensus       135 ~~~-~~l~~L~~L~l~~~~l~~~~~~~l~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~---~  205 (404)
                      ..| ..+++|++|++++|.+... +..+..+     ++|++|++++|.++.+++..|..+++|++|++++|++.+.   +
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  192 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI  192 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence            332 7788888888888888877 4555555     7888888888888887777777777888888877775432   1


Q ss_pred             -CCccCCCCCCCEEECCCCcCCCCC---hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccc
Q psy12291        206 -PGLFNYFKHLTFLELSENWISSLN---GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTF  281 (404)
Q Consensus       206 -~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  281 (404)
                       ...+..+++|++|++++|.+..++   ...+..+++|++|++++|.+....+                       ...+
T Consensus       193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----------------------~~~~  249 (312)
T 1wwl_A          193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-----------------------APSC  249 (312)
T ss_dssp             HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-----------------------CSCC
T ss_pred             HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-----------------------hhhh
Confidence             111245555666666655555322   1222344455555555554444331                       1223


Q ss_pred             cCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291        282 AGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       282 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~  346 (404)
                      ..+++|++|++++|+++.++...+   ++|++|++++|++++++.  +..+++|+.|++++|++.
T Consensus       250 ~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred             hhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCC
Confidence            334455555555555554433222   455555555555555532  455556666666666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.7e-26  Score=217.98  Aligned_cols=227  Identities=24%  Similarity=0.389  Sum_probs=193.8

Q ss_pred             CCCceEEecCCCCCccCCCCC-CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQI-IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~-~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      +..+.++..++.++.++...+ ...+++.|++++|.+..+.+.+|.++++|++|++++|+++.++...|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            346789999999999886532 3468999999999999999999999999999999999999999988999999999999


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccC-CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ  179 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  179 (404)
                      ++|.++.+++..|..+++|++|++++ +.+..++...|.++++|+.|++++|.+..++  .+..+++|+.|++++|.++.
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCE
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCc
Confidence            99999999998899999999999998 5677788888889999999999999888765  46778888888888888888


Q ss_pred             CCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291        180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE  250 (404)
Q Consensus       180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  250 (404)
                      +++..|..+++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            87777888888888888888888777777777777777777777777777666777777777777777553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.95  E-value=9.7e-28  Score=220.37  Aligned_cols=229  Identities=26%  Similarity=0.399  Sum_probs=180.5

Q ss_pred             cEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccC-CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCC
Q psy12291        168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN-YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ  246 (404)
Q Consensus       168 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  246 (404)
                      +.++++++.++.+|....   +.++.|++++|.++.+.+..+. .+++|+.|++++|.+..+++..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            567777777777765432   4577788888887777777676 788888888888888888777788888899999999


Q ss_pred             CCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCcccc---CCCCCCcEEeCCCCCCcc
Q psy12291        247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAF---EPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       247 ~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~  323 (404)
                      |.+..++...|..+++|+.|+|++|.++.+.+..|.++++|++|+|++|+++.++...|   ..+++|+.|+|++|+++.
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99888888788889999999999999999888889999999999999999999888777   568999999999999999


Q ss_pred             cCcccccCCCC--CcEEEccCCccccccCcHHH-HHHHHhccCccc--CCCCeeCCCCCCCCCcccCCCCcCCCCccccc
Q psy12291        324 LATDSLSLLPN--LITLKLAKNPWHCDCAILYM-ARWLRANRRKVW--DSKPTCRGPGNLGGKSVEDMSFDDLCEGQWAS  398 (404)
Q Consensus       324 ~~~~~~~~l~~--L~~l~l~~Np~~C~c~~~~~-~~~~~~~~~~~~--~~~~~C~~p~~l~~~~l~~~~~~~~C~~~~~~  398 (404)
                      ++...+..++.  ++.|+|.+|||.|||.+.|+ ..|.......+.  ....+|++|+.+.+  +..+. ...|......
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~--~~~~~-~~~C~~~~~~  254 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN--IFSLD-FFNCSEYKES  254 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSSCCEE--GGGCC-CTTCCSCCCC
T ss_pred             cCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCChHHcC--ccccc-cccCCCcccc
Confidence            99888888887  48899999999999999986 568765543332  23789999987754  33333 2338876655


Q ss_pred             cccc
Q psy12291        399 MVKL  402 (404)
Q Consensus       399 ~~~~  402 (404)
                      .+.+
T Consensus       255 ~v~v  258 (361)
T 2xot_A          255 AWEA  258 (361)
T ss_dssp             CCEE
T ss_pred             Ccee
Confidence            5443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.1e-26  Score=218.19  Aligned_cols=227  Identities=27%  Similarity=0.394  Sum_probs=191.0

Q ss_pred             CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      +..+.++..+++++.++... ....+++.|++++|.+..+.+..|.++++|++|+|++|+++.++...|..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            35789999999999986653 33468999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccC-CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCC
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSY-NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQ  179 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~  179 (404)
                      ++|.++.++...|..+++|+.|++++ +.+..++...|.++++|+.|++++|.+..++  .+..+++|+.|++++|.++.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcc
Confidence            99999999998899999999999998 6677888888888999999999999888764  46677888888888888888


Q ss_pred             CCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc
Q psy12291        180 LPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE  250 (404)
Q Consensus       180 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  250 (404)
                      +++..|..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+..+++..+..+++|+.|++++|.+.
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77777777888888888888777777777777777777777777777776666666777777777776543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.95  E-value=4.9e-30  Score=244.04  Aligned_cols=325  Identities=22%  Similarity=0.215  Sum_probs=222.4

Q ss_pred             CCceEEecCCCCCc-----cCCCCCCCCCeeEEEcCCCCCcccChhhc-CCCC----CCCEEEccCCcCcccC----ccc
Q psy12291         23 EIHTLSCWKQDMEE-----LPFDQIIPVDIRVIDLGINQLSTLSKDAF-TGLY----KLTELKLRKNHLSELP----GKL   88 (404)
Q Consensus        23 ~~~~~~~~~~~l~~-----ip~~~~~~~~l~~L~l~~~~i~~~~~~~~-~~~~----~L~~L~l~~~~l~~~~----~~~   88 (404)
                      ..+.++..++.+..     ++......+++++|++++|.+.......+ ..++    +|++|++++|+++...    +..
T Consensus        29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  108 (461)
T 1z7x_W           29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST  108 (461)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence            46677777777763     22221123468888888888766443333 2344    5888888888877432    455


Q ss_pred             ccCCCCCCEEeCCCCCCcccCc-----cccCCCCCCcEEEccCCCCCcCC----CccCCCCCCCCEEECCCCcccccccc
Q psy12291         89 FISTINLSTMDLSQNLIKTLPS-----TFFKGAIRLTVVQLSYNAIESLP----ANVFHDLISLEELDLSQNVLTSIQYG  159 (404)
Q Consensus        89 ~~~~~~L~~L~l~~n~l~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~  159 (404)
                      |..+++|++|++++|.++....     ..+...++|++|++++|.++...    ...+..+++|++|++++|.+......
T Consensus       109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  188 (461)
T 1z7x_W          109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  188 (461)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence            6778888888888887764322     22334567888888888777543    23345567888888888887655443


Q ss_pred             ccc-----CCccCcEEeccCCCCCCCC----CCccCCCCCCCeEecCCCcCcccC-----CCccCCCCCCCEEECCCCcC
Q psy12291        160 TFS-----GMYSLKRLKLQSNRINQLP----PGIFDDLKYLDFLSLRNNRLSFIR-----PGLFNYFKHLTFLELSENWI  225 (404)
Q Consensus       160 ~l~-----~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~  225 (404)
                      .+.     ..++|++|++++|.++...    +..+..+++|++|++++|.++...     +..+..+++|++|++++|.+
T Consensus       189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            332     2558888888888887632    233456788999999998876532     23344678899999999988


Q ss_pred             CCCC----hhhhcCCCCCcEEECCCCCCcccCcccc-----cCCCCCcEEECcCCCcccccc----ccccCCCCCCeeec
Q psy12291        226 SSLN----GDEFSQLTSLKELHLGQNYIETIPAGSF-----ANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFL  292 (404)
Q Consensus       226 ~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l  292 (404)
                      +...    +..+..+++|++|++++|.+.......+     ...++|+.|++++|.++....    ..+..+++|++|++
T Consensus       269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  348 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  348 (461)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence            7642    3455668899999999998864432222     233689999999998887532    34556799999999


Q ss_pred             ccccccccCccccC-----CCCCCcEEeCCCCCCcc----cCcccccCCCCCcEEEccCCcccc
Q psy12291        293 NNNLLRYLDTKAFE-----PMLHLKKLQLDSNKLQY----LATDSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       293 ~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      ++|+++......+.     ..++|++|++++|.++.    ..+..+..+++|+.|++++|++..
T Consensus       349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            99998876543332     26799999999999885    224456678999999999998754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=6.2e-28  Score=230.00  Aligned_cols=226  Identities=25%  Similarity=0.304  Sum_probs=199.6

Q ss_pred             CCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeE
Q psy12291        115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL  194 (404)
Q Consensus       115 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  194 (404)
                      .+++|+.|++++|.++.+++..|..+++|+.|++++|.+....+  +..+++|++|++++|.++.+++.     ++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEE
Confidence            45689999999999999998889999999999999999987664  88999999999999999887642     789999


Q ss_pred             ecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccccc-CCCCCcEEECcCCCc
Q psy12291        195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA-NLQSLEKLFLYSNNI  273 (404)
Q Consensus       195 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~n~l  273 (404)
                      ++++|.++.+++.   .+++|+.|++++|.+....+..+..+++|+.|++++|.+..+++..+. .+++|+.|+|++|.+
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            9999999987654   457899999999999999888899999999999999999987665564 789999999999999


Q ss_pred             cccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHH
Q psy12291        274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILY  353 (404)
Q Consensus       274 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~  353 (404)
                      +.++.  ...+++|++|+|++|+++.+++. +..+++|+.|++++|.+++++.. +..+++|+.|++++|++.|++...+
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~  257 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF  257 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHH
Confidence            98854  34589999999999999998776 77889999999999999998764 7889999999999999999865443


Q ss_pred             H
Q psy12291        354 M  354 (404)
Q Consensus       354 ~  354 (404)
                      +
T Consensus       258 ~  258 (487)
T 3oja_A          258 F  258 (487)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.95  E-value=1.6e-26  Score=201.34  Aligned_cols=188  Identities=35%  Similarity=0.574  Sum_probs=160.5

Q ss_pred             CCCCC--ceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCccccc
Q psy12291         13 CCEGP--CRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI   90 (404)
Q Consensus        13 ~~~~~--c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~   90 (404)
                      .||..  |.|.+..+.++|.+++++.+|..  ++.+++.|++++|.+..+.+..|.++++|++|++++|.+..+++..|.
T Consensus         3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   80 (251)
T 3m19_A            3 TCETVTGCTCNEGKKEVDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD   80 (251)
T ss_dssp             -CHHHHSSEEEGGGTEEECTTCCCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred             cCCCCCceEcCCCCeEEecCCCCccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence            35555  99988888999999999999986  678999999999999999888899999999999999999999988889


Q ss_pred             CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291         91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL  170 (404)
Q Consensus        91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  170 (404)
                      .+++|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.+..+.+..|..+++|++|
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            99999999999999999988888889999999999999888888777888888888888888887777777777788888


Q ss_pred             eccCCCCCCCCCCccCCCCCCCeEecCCCcCc
Q psy12291        171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLS  202 (404)
Q Consensus       171 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~  202 (404)
                      ++++|.++.+++..|..+++|+.|++++|.+.
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            88888877777766677777777777776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.8e-29  Score=224.55  Aligned_cols=232  Identities=16%  Similarity=0.117  Sum_probs=152.8

Q ss_pred             ccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcC--CCccC------CCCCCCCEEECCCCccccccccc
Q psy12291         89 FISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL--PANVF------HDLISLEELDLSQNVLTSIQYGT  160 (404)
Q Consensus        89 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~------~~l~~L~~L~l~~~~l~~~~~~~  160 (404)
                      +...++|++|++++|.+ .+|......   |+.|++++|.+..+  +....      .++++|++|++++|.+....+..
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            45566788888888888 777653322   67777777766432  21110      03455666666665555433333


Q ss_pred             c--cCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCC
Q psy12291        161 F--SGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS  238 (404)
Q Consensus       161 l--~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  238 (404)
                      +  ..+++|++|++++|.+++++ ..+..+.                   ...+++|++|++++|.+..+++..+..+++
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~-------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~  174 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATRD-AWLAELQ-------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPA  174 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSSS-SHHHHHH-------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred             HHHhcCCCccEEEccCCCCcchh-HHHHHHH-------------------HhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence            2  45555555555555555442 2222220                   001256677777777766666666777777


Q ss_pred             CcEEECCCCCCccc---C-cccccCCCCCcEEECcCCCcccc---ccccccCCCCCCeeecccccccccCc-cccCCCCC
Q psy12291        239 LKELHLGQNYIETI---P-AGSFANLQSLEKLFLYSNNIQEL---HAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLH  310 (404)
Q Consensus       239 L~~L~l~~~~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~  310 (404)
                      |++|++++|.+...   + ...+..+++|+.|++++|.++.+   ....+..+++|++|++++|+++...+ ..+..+++
T Consensus       175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            77777777775432   1 11236788999999999988843   33556678999999999999998763 56677899


Q ss_pred             CcEEeCCCCCCcccCcccccCCCCCcEEEccCCcccc
Q psy12291        311 LKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       311 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C  347 (404)
                      |++|++++|+++.++....   ++|+.|++++|.+.-
T Consensus       255 L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          255 LNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDR  288 (312)
T ss_dssp             CCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCS
T ss_pred             CCEEECCCCccChhhhhcc---CCceEEECCCCCCCC
Confidence            9999999999998876543   899999999999854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.1e-26  Score=208.44  Aligned_cols=227  Identities=22%  Similarity=0.247  Sum_probs=102.2

Q ss_pred             CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS  125 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  125 (404)
                      .++.|++++|.+..++. .+.++++|++|++++|.+..+|.. |..+++|++|++++|.++.+|.. +..+++|++|+++
T Consensus        82 ~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECC
Confidence            46666666666665533 344566666666666666655432 35566666666666666655543 5556666666666


Q ss_pred             CCCCC-cCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc
Q psy12291        126 YNAIE-SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI  204 (404)
Q Consensus       126 ~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  204 (404)
                      +|.+. .++.. +..      ..+         ...+.++++|++|++++|.++.++.. +..+++|++|++++|.++.+
T Consensus       159 ~n~~~~~~p~~-~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          159 ACPELTELPEP-LAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSAL  221 (328)
T ss_dssp             EETTCCCCCSC-SEE------EC----------CCCEEESTTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCC
T ss_pred             CCCCccccChh-Hhh------ccc---------hhhhccCCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcC
Confidence            54332 22221 111      000         01233344555555555555444322 34444444444444444433


Q ss_pred             CCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291        205 RPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL  284 (404)
Q Consensus       205 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  284 (404)
                      ++ .+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+
T Consensus       222 ~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          222 GP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             CG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             ch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            22 23334444444444443333333333344444444444433322222223334444444444433333323333333


Q ss_pred             CCCCeeecc
Q psy12291        285 TNLTALFLN  293 (404)
Q Consensus       285 ~~L~~L~l~  293 (404)
                      ++|+.+++.
T Consensus       301 ~~L~~l~l~  309 (328)
T 4fcg_A          301 PANCIILVP  309 (328)
T ss_dssp             CTTCEEECC
T ss_pred             cCceEEeCC
Confidence            333333333

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=8.1e-26  Score=203.06  Aligned_cols=228  Identities=22%  Similarity=0.276  Sum_probs=169.7

Q ss_pred             CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccC--hhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q psy12291         22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLS--KDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM   98 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L   98 (404)
                      +..+.++..++.++.+|... ....++++|++++|.+..+.  +..+.++++|++|++++|.+..++.. |..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEE
Confidence            46789999999999999764 34568999999999998653  45667899999999999999988765 6889999999


Q ss_pred             eCCCCCCcccCc-cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc-cccccccCCccCcEEeccCCC
Q psy12291         99 DLSQNLIKTLPS-TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS-IQYGTFSGMYSLKRLKLQSNR  176 (404)
Q Consensus        99 ~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~  176 (404)
                      ++++|.++.++. ..+..+++|++|++++|.+..+....+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence            999999998876 568899999999999999988877778888899999999888775 445566777777777777777


Q ss_pred             CCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccc
Q psy12291        177 INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS  256 (404)
Q Consensus       177 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  256 (404)
                      ++.+++..+..+++|++|++++|.++.+.+..+                        ..+++|++|++++|.+....+..
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY------------------------KCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG------------------------TTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhc------------------------cCcccCCEeECCCCCCcccCHHH
Confidence            776665556666666666666665555444344                        44455555555555555444444


Q ss_pred             ccCCC-CCcEEECcCCCcc
Q psy12291        257 FANLQ-SLEKLFLYSNNIQ  274 (404)
Q Consensus       257 ~~~l~-~L~~L~L~~n~l~  274 (404)
                      +..++ +|+.|++++|.++
T Consensus       243 ~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEE
T ss_pred             HHhhhccCCEEEccCCCee
Confidence            44442 5666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.94  E-value=3.3e-26  Score=190.68  Aligned_cols=174  Identities=24%  Similarity=0.469  Sum_probs=150.0

Q ss_pred             CEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccc
Q psy12291        216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN  295 (404)
Q Consensus       216 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n  295 (404)
                      +.++++++.+..++.. +  .++|++|++++|.+..++. .+..+++|+.|+|++|.++.+++.+|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            5677777777776642 2  2578899999999988884 7888999999999999999998888999999999999999


Q ss_pred             cccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCC
Q psy12291        296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGP  375 (404)
Q Consensus       296 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p  375 (404)
                      +++.+++..|..+++|+.|+|++|+++.++...+..+++|+.|++++|||.|||.+.|+..|+.....  .....+|++|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~--~~~~~~C~~P  166 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYK--EPGIARCAGP  166 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSC--CCSCCBEEES
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccC--CCCCcCcCCc
Confidence            99999999999999999999999999999998899999999999999999999999999999987532  2246799999


Q ss_pred             CCCCCCcccCCCCcCC-CCcc
Q psy12291        376 GNLGGKSVEDMSFDDL-CEGQ  395 (404)
Q Consensus       376 ~~l~~~~l~~~~~~~~-C~~~  395 (404)
                      +.++|+.+.+++.+.+ |...
T Consensus       167 ~~l~g~~l~~~~~~~~~~~~~  187 (193)
T 2wfh_A          167 GEMADKLLLTTPSKKFTCAAA  187 (193)
T ss_dssp             GGGTTCBTTTSCGGGCCC---
T ss_pred             hHHCCCCcccCChHHeeehhh
Confidence            9999999999998776 5443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.94  E-value=1.9e-25  Score=196.89  Aligned_cols=197  Identities=32%  Similarity=0.543  Sum_probs=160.6

Q ss_pred             cCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcE
Q psy12291        162 SGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE  241 (404)
Q Consensus       162 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  241 (404)
                      ..+++|+.|++.++.+..++.  +..+++|++|++++|.++.+  ..+..+++|++|++++|.+..+++..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            344566666666666665443  45666777777777766654  24667778888888888888777777788888888


Q ss_pred             EECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCC
Q psy12291        242 LHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKL  321 (404)
Q Consensus       242 L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  321 (404)
                      |++++|.+..+++..+..+++|+.|++++|.++.+++..|..+++|++|++++|+++.+++..+..+++|++|++++|++
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            88888888888877788889999999999999988888888899999999999999998888889999999999999999


Q ss_pred             cccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhcc
Q psy12291        322 QYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANR  362 (404)
Q Consensus       322 ~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~  362 (404)
                      +++++..+..+++|+.|++++|||.|+|+ +.++..|.....
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS  235 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTG
T ss_pred             CccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCC
Confidence            99998888999999999999999999997 667777776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=3.4e-25  Score=196.89  Aligned_cols=202  Identities=31%  Similarity=0.412  Sum_probs=165.1

Q ss_pred             eecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q psy12291         19 RCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM   98 (404)
Q Consensus        19 ~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L   98 (404)
                      .+.+..+.++|.+++++.+|..  ++.+++.|++++|.+..+.+..|.++++|+.|++++|.++.++..  ..+++|++|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             cccCCccEEECCCCCCCcCCCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            3345688999999999999976  678999999999999999888999999999999999999988764  678999999


Q ss_pred             eCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCC
Q psy12291         99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN  178 (404)
Q Consensus        99 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  178 (404)
                      ++++|.++.+|.. +..+++|++|++++|.++.+++..|.++++|+.|++++|.+..+.+..|..+++|+.|++++|.++
T Consensus        83 ~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            9999999988864 678889999999999998888877888888888888888888887777777888888888888888


Q ss_pred             CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291        179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS  226 (404)
Q Consensus       179 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  226 (404)
                      .+++..|..+++|+.|++++|+++.++.. +...++|+.+++++|.+.
T Consensus       162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          162 ELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred             ccCHHHhcCcCCCCEEECCCCcCCccChh-hcccccCCeEEeCCCCcc
Confidence            88777777777777777777777755433 333445666666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=7.2e-29  Score=236.00  Aligned_cols=323  Identities=18%  Similarity=0.165  Sum_probs=215.1

Q ss_pred             CceEEecCCCCCccCCCC--CCCCCeeEEEcCCCCCcccC----hhhcCCCCCCCEEEccCCcCcccCc-ccccCCC---
Q psy12291         24 IHTLSCWKQDMEELPFDQ--IIPVDIRVIDLGINQLSTLS----KDAFTGLYKLTELKLRKNHLSELPG-KLFISTI---   93 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~--~~~~~l~~L~l~~~~i~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~---   93 (404)
                      .+.++..++.+...+...  ...+++++|++++|.++...    +..+..+++|++|++++|.+.+... ..+..++   
T Consensus         5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~   84 (461)
T 1z7x_W            5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS   84 (461)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred             ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence            455666666666543221  12246888888888876432    3446667888888888888775332 2223344   


Q ss_pred             -CCCEEeCCCCCCcccC----ccccCCCCCCcEEEccCCCCCcCCC-----ccCCCCCCCCEEECCCCcccccc----cc
Q psy12291         94 -NLSTMDLSQNLIKTLP----STFFKGAIRLTVVQLSYNAIESLPA-----NVFHDLISLEELDLSQNVLTSIQ----YG  159 (404)
Q Consensus        94 -~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~~~l~~~~----~~  159 (404)
                       +|++|++++|.++...    +..+..+++|++|++++|.++....     ..+...++|++|++++|.+....    +.
T Consensus        85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence             6888888888877422    3447778888888888887764221     22333567888888888777644    23


Q ss_pred             cccCCccCcEEeccCCCCCCCCCCccC-----CCCCCCeEecCCCcCcccC----CCccCCCCCCCEEECCCCcCCCCCh
Q psy12291        160 TFSGMYSLKRLKLQSNRINQLPPGIFD-----DLKYLDFLSLRNNRLSFIR----PGLFNYFKHLTFLELSENWISSLNG  230 (404)
Q Consensus       160 ~l~~l~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~  230 (404)
                      .+..+++|++|++++|.++......+.     ..++|++|++++|.++...    +..+..+++|++|++++|.+.....
T Consensus       165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  244 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM  244 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence            455567888888888887643322221     2457888888888877532    3445567888888888887765432


Q ss_pred             -----hhhcCCCCCcEEECCCCCCcccC----cccccCCCCCcEEECcCCCcccccccccc-----CCCCCCeeeccccc
Q psy12291        231 -----DEFSQLTSLKELHLGQNYIETIP----AGSFANLQSLEKLFLYSNNIQELHAGTFA-----GLTNLTALFLNNNL  296 (404)
Q Consensus       231 -----~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~  296 (404)
                           ..+..+++|++|++++|.++...    ...+..+++|+.|++++|.+.+.....+.     ..++|++|++++|.
T Consensus       245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence                 22235778888888888887632    12455678889999988888765443332     23688999999888


Q ss_pred             ccccCc----cccCCCCCCcEEeCCCCCCcccCcccccC-----CCCCcEEEccCCccc
Q psy12291        297 LRYLDT----KAFEPMLHLKKLQLDSNKLQYLATDSLSL-----LPNLITLKLAKNPWH  346 (404)
Q Consensus       297 i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~l~l~~Np~~  346 (404)
                      ++....    ..+..+++|++|++++|.+++.....+..     .++|+.|++++|.+.
T Consensus       325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            876542    44556788999999999888765443332     678999999988764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.94  E-value=9.1e-26  Score=188.07  Aligned_cols=177  Identities=25%  Similarity=0.492  Sum_probs=153.3

Q ss_pred             CEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcc-cccCCCCCcEEECcCCCccccccccccCCCCCCeeeccc
Q psy12291        216 TFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG-SFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN  294 (404)
Q Consensus       216 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  294 (404)
                      +.++++++.+..++.. +.  .+|++|++++|.+..++.. .+..+++|+.|+|++|.++.+.+..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~~ip~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRD-IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSC-CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccC-CC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            5677777777776642 22  3788999999998888763 578899999999999999999888899999999999999


Q ss_pred             ccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCC
Q psy12291        295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRG  374 (404)
Q Consensus       295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~  374 (404)
                      |+++.+++..|..+++|++|+|++|+++++.+..+..+++|+.|++++|||.|+|.+.|+..|++.....  .....|++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~--~~~~~C~~  165 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN--GGAARCGA  165 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCS--GGGCBBCS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCC--CCCCCCCC
Confidence            9999999888999999999999999999998888999999999999999999999999999999876432  24688999


Q ss_pred             CCCCCCCcccCCCCcCC-CCcccc
Q psy12291        375 PGNLGGKSVEDMSFDDL-CEGQWA  397 (404)
Q Consensus       375 p~~l~~~~l~~~~~~~~-C~~~~~  397 (404)
                      |+.++|+.+.++...++ |.+..+
T Consensus       166 P~~l~~~~l~~l~~~~~~C~~~~~  189 (192)
T 1w8a_A          166 PSKVRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             STTTTTSBGGGSCTTTCCCCCC--
T ss_pred             ChHHcCCChhhCcHhhcCcCCCCC
Confidence            99999999999998887 876543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.94  E-value=2.6e-25  Score=190.69  Aligned_cols=196  Identities=29%  Similarity=0.489  Sum_probs=154.1

Q ss_pred             CCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcC
Q psy12291        191 LDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS  270 (404)
Q Consensus       191 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~  270 (404)
                      -+.++.+++.++.++...   .++|++|++++|.+..+.+..|..+++|++|++++|.+..++...|..+++|+.|+|++
T Consensus        21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            344555555555544322   25677777777777777666777788888888888888888777778888888888888


Q ss_pred             CCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccC
Q psy12291        271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA  350 (404)
Q Consensus       271 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~  350 (404)
                      |.++.++...|..+++|++|++++|+++.++ ..+..+++|+.|++++|+++.++...+..+++|+.|++++|||.|+|.
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            8888888878888899999999999988774 445788999999999999999998889999999999999999999996


Q ss_pred             -cHHHHHHHHhccCcc---------cCCCCeeCCCCCCCCCcccCCCCcCCCCc
Q psy12291        351 -ILYMARWLRANRRKV---------WDSKPTCRGPGNLGGKSVEDMSFDDLCEG  394 (404)
Q Consensus       351 -~~~~~~~~~~~~~~~---------~~~~~~C~~p~~l~~~~l~~~~~~~~C~~  394 (404)
                       +.++..|+......+         ......|++|    |.++.+++....|..
T Consensus       177 ~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~~~~~~~  226 (229)
T 3e6j_A          177 DIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTEASTSPS  226 (229)
T ss_dssp             GGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCGGGCBTT
T ss_pred             hhHHHHHHHHhCccccccccCcccCCCCcCccCCC----CccceeccccccCcc
Confidence             889999998765433         1226789886    678888887777643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=6.7e-26  Score=205.13  Aligned_cols=232  Identities=18%  Similarity=0.197  Sum_probs=109.1

Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ  173 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  173 (404)
                      ++++|++++|.++.+|+. +..+++|++|++++|.++.++.. +..+++|++|++++|.+..+ +..+.++++|++|+++
T Consensus        82 ~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           82 GRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIR  158 (328)
T ss_dssp             TCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEE
T ss_pred             ceeEEEccCCCchhcChh-hhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECC
Confidence            344444444444444433 22344444444444444433321 23444444444444444433 2334444555555555


Q ss_pred             CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccC
Q psy12291        174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP  253 (404)
Q Consensus       174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  253 (404)
                      +|.+.+..+..+..      ..+         ...+..+++|++|++++|.+..++ ..+..+++|++|++++|.+..++
T Consensus       159 ~n~~~~~~p~~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          159 ACPELTELPEPLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             EETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCC
T ss_pred             CCCCccccChhHhh------ccc---------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCc
Confidence            54332222111111      000         011233444555555555444333 23455555555555555555554


Q ss_pred             cccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCC
Q psy12291        254 AGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP  333 (404)
Q Consensus       254 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  333 (404)
                      . .+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+|++|.+.+..+..+..++
T Consensus       223 ~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          223 P-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             G-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred             h-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence            4 345555555555555555544444555555566666655555444444455556666666666555554445555566


Q ss_pred             CCcEEEccCCcc
Q psy12291        334 NLITLKLAKNPW  345 (404)
Q Consensus       334 ~L~~l~l~~Np~  345 (404)
                      +++.+++..|.+
T Consensus       302 ~L~~l~l~~~~~  313 (328)
T 4fcg_A          302 ANCIILVPPHLQ  313 (328)
T ss_dssp             TTCEEECCGGGS
T ss_pred             CceEEeCCHHHH
Confidence            666666554433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=6.1e-26  Score=201.71  Aligned_cols=206  Identities=28%  Similarity=0.376  Sum_probs=165.8

Q ss_pred             cCCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCc-CcccCcccccCCCCCCEE
Q psy12291         21 RPEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNH-LSELPGKLFISTINLSTM   98 (404)
Q Consensus        21 ~~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L   98 (404)
                      .+..+.++..++.++.++... ....++++|++++|.+..+.+.+|.++++|++|++++|. +..+++..|..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            346789999999999998653 234689999999999999988899999999999999997 999988889999999999


Q ss_pred             eCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCC
Q psy12291         99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN  178 (404)
Q Consensus        99 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  178 (404)
                      ++++|.++.+++..|.++++|++|++++|.++.++...|..+++|+.|++++|.+..+....+.++++|++|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            99999999998888889999999999999998888777788888888888888888777666777777777777777777


Q ss_pred             CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291        179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS  226 (404)
Q Consensus       179 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  226 (404)
                      .+.+..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus       191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            666555666666666666666665555444555555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.94  E-value=2.9e-26  Score=209.73  Aligned_cols=245  Identities=25%  Similarity=0.322  Sum_probs=161.9

Q ss_pred             CEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCC-cCCCccCCCCCCCCE-EECC
Q psy12291         72 TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE-SLPANVFHDLISLEE-LDLS  149 (404)
Q Consensus        72 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~-L~l~  149 (404)
                      ++++.++++++++|...   .+++++|++++|+|+.+++.+|.++++|++|+|++|.+. .++..+|.++++++. +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45666777777777654   346777777777777777766777777777777777653 355566666666554 3444


Q ss_pred             CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291        150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN  229 (404)
Q Consensus       150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  229 (404)
                      +|.+..+.+..|.++++|++|++++|.+..+++..+....++..+++.+                       .+.+..++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~-----------------------~~~i~~l~  145 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD-----------------------NINIHTIE  145 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES-----------------------CTTCCEEC
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc-----------------------cccccccc
Confidence            5666666666666666666666666666665554444444444444432                       12344444


Q ss_pred             hhhhcCCC-CCcEEECCCCCCcccCcccccCCCCCcEEECc-CCCccccccccccCCCCCCeeecccccccccCccccCC
Q psy12291        230 GDEFSQLT-SLKELHLGQNYIETIPAGSFANLQSLEKLFLY-SNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP  307 (404)
Q Consensus       230 ~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~  307 (404)
                      ...|..+. .++.|++++|+++.++...+. ..+|+.|++. +|.++.++..+|.++++|++|++++|+|+.++...+. 
T Consensus       146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~-  223 (350)
T 4ay9_X          146 RNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE-  223 (350)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT-
T ss_pred             ccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc-
Confidence            44444443 577788888888888775553 4678888886 4778888888888888888999988888888776665 


Q ss_pred             CCCCcEEeCCC-CCCcccCcccccCCCCCcEEEccCCcccccc
Q psy12291        308 MLHLKKLQLDS-NKLQYLATDSLSLLPNLITLKLAKNPWHCDC  349 (404)
Q Consensus       308 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c  349 (404)
                        +|+.|.+.+ +.++.++.  +..+++|+.+++. ||++|.|
T Consensus       224 --~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~-~~~~c~~  261 (350)
T 4ay9_X          224 --NLKKLRARSTYNLKKLPT--LEKLVALMEASLT-YPSHCCA  261 (350)
T ss_dssp             --TCCEEECTTCTTCCCCCC--TTTCCSCCEEECS-CHHHHHH
T ss_pred             --cchHhhhccCCCcCcCCC--chhCcChhhCcCC-CCccccc
Confidence              445555444 45777764  7788999999985 7888855

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.93  E-value=1.5e-25  Score=193.84  Aligned_cols=205  Identities=23%  Similarity=0.428  Sum_probs=128.0

Q ss_pred             CcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCc-ccccccccccCCccCcEEeccC-CCCCCCCC
Q psy12291        105 IKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV-LTSIQYGTFSGMYSLKRLKLQS-NRINQLPP  182 (404)
Q Consensus       105 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~l~~l~~L~~L~l~~-~~l~~~~~  182 (404)
                      ++.+|.  +  .++|++|++++|.++.++...|.++++|+.|++++|. +..+.+..|.++++|++|++++ |.++.+++
T Consensus        23 l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            555554  2  2366677777776666666666666666666666665 6666655666666666666665 66666665


Q ss_pred             CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCc---EEECCCC-CCcccCccccc
Q psy12291        183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK---ELHLGQN-YIETIPAGSFA  258 (404)
Q Consensus       183 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~  258 (404)
                      ..|..+++|++|++++|.++.+                        +.  +..+++|+   +|++++| .+..++...|.
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~l------------------------p~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~  152 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMF------------------------PD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ  152 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSC------------------------CC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccc------------------------cc--cccccccccccEEECCCCcchhhcCccccc
Confidence            5555556666666655555443                        21  33444444   6666666 66666655566


Q ss_pred             CCCCCc-EEECcCCCccccccccccCCCCCCeeeccccc-ccccCccccCCC-CCCcEEeCCCCCCcccCcccccCCCCC
Q psy12291        259 NLQSLE-KLFLYSNNIQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPM-LHLKKLQLDSNKLQYLATDSLSLLPNL  335 (404)
Q Consensus       259 ~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L  335 (404)
                      .+++|+ .|++++|.++.++...|.. ++|++|++++|+ ++.+++..|..+ ++|+.|++++|+++.++..   .+++|
T Consensus       153 ~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L  228 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHL  228 (239)
T ss_dssp             TTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTC
T ss_pred             chhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccC
Confidence            666666 6666666666666555555 667777777773 666666666666 6777777777777766654   45667


Q ss_pred             cEEEccCC
Q psy12291        336 ITLKLAKN  343 (404)
Q Consensus       336 ~~l~l~~N  343 (404)
                      +.|++.++
T Consensus       229 ~~L~l~~~  236 (239)
T 2xwt_C          229 KELIARNT  236 (239)
T ss_dssp             SEEECTTC
T ss_pred             ceeeccCc
Confidence            77777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=5.3e-25  Score=194.08  Aligned_cols=177  Identities=32%  Similarity=0.494  Sum_probs=81.5

Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEe
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK  171 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  171 (404)
                      +++|+.|++++|.++.++.  +..+++|++|++++|.++.++  .+..+++|++|++++|.+..+.+..+.++++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            4444555555554444432  334444444544444444432  233444444444444444444444444444444444


Q ss_pred             ccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc
Q psy12291        172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET  251 (404)
Q Consensus       172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  251 (404)
                      +++|.++.+++..|..+++|++|++++|.++.+++..+..+++|++|++++|.+..+++..+..+++|++|++++|.+..
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            44444444444444444444444444444444443334444444444444444444443334444445555555444444


Q ss_pred             cCcccccCCCCCcEEECcCCC
Q psy12291        252 IPAGSFANLQSLEKLFLYSNN  272 (404)
Q Consensus       252 ~~~~~~~~l~~L~~L~L~~n~  272 (404)
                      +++..+..+++|+.|++++|.
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCHHHHhCCcCCCEEEccCCC
Confidence            444444444455555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.93  E-value=7.6e-25  Score=185.21  Aligned_cols=189  Identities=31%  Similarity=0.475  Sum_probs=162.6

Q ss_pred             CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCC
Q psy12291         14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI   93 (404)
Q Consensus        14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~   93 (404)
                      ||..|.|.  +..++|.+.+++.+|..  .+.++++|++++|.++.+.+..|.++++|++|++++|++..++...|..++
T Consensus         1 Cp~~C~C~--~~~v~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (208)
T 2o6s_A            1 CPSRCSCS--GTTVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT   76 (208)
T ss_dssp             CCTTCEEE--TTEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCCCEEC--CCEEEecCCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC
Confidence            78999996  57899999999999976  677999999999999999888899999999999999999999988889999


Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ  173 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  173 (404)
                      +|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|.+..+....+..+++|++|+++
T Consensus        77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  156 (208)
T 2o6s_A           77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH  156 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence            99999999999999988888899999999999999998888878888899999999998888877778888888999888


Q ss_pred             CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCC
Q psy12291        174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFK  213 (404)
Q Consensus       174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  213 (404)
                      +|.+.       ..+++|++|++..|.+++..+..++.++
T Consensus       157 ~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          157 DNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             SCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            88553       3456778888887777766555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.92  E-value=5e-25  Score=197.70  Aligned_cols=211  Identities=24%  Similarity=0.369  Sum_probs=165.3

Q ss_pred             EEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcc
Q psy12291         74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL  153 (404)
Q Consensus        74 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l  153 (404)
                      +.+..+.+.++..  +..+++|++|++++|.++.++.  +..+++|++|++++|.++.++.  +..+++|+.|++++|.+
T Consensus        24 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l   97 (308)
T 1h6u_A           24 IAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (308)
T ss_dssp             HHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCceec--HHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence            3445555554322  2457789999999999988874  7788999999999999888876  77888999999999988


Q ss_pred             cccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhh
Q psy12291        154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF  233 (404)
Q Consensus       154 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  233 (404)
                      ..+.  .+..+++|++|++++|.++.+++  +..+++|++|++++|.++.+.+  +..+++|+.|++++|.+..+++  +
T Consensus        98 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l  169 (308)
T 1h6u_A           98 KNVS--AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L  169 (308)
T ss_dssp             SCCG--GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred             CCch--hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence            8764  57788889999999988888764  6788888888888888877654  6777888888888888877654  7


Q ss_pred             cCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc
Q psy12291        234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT  302 (404)
Q Consensus       234 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  302 (404)
                      ..+++|+.|++++|.+..++.  +..+++|+.|++++|.++.+++  +..+++|++|++++|.++..+.
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            778888888888888877765  6677888888888888887763  6777888888888888776544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.92  E-value=6.7e-24  Score=180.67  Aligned_cols=164  Identities=30%  Similarity=0.519  Sum_probs=136.6

Q ss_pred             CCCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCccccc
Q psy12291         11 YRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI   90 (404)
Q Consensus        11 ~~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~   90 (404)
                      ...||..|.|..  ..++|.+++++.+|..  ++.+++.|++++|.|..+.+..|.++++|+.|++++|++..+.+..|.
T Consensus         2 ~~~CP~~C~C~~--~~v~c~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~   77 (220)
T 2v9t_B            2 SLHCPAACTCSN--NIVDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ   77 (220)
T ss_dssp             CCCSCTTSEEET--TEEECTTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCCCCCCCEECC--CEEEcCCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence            346899999974  6899999999999986  678899999999999999888899999999999999999988888888


Q ss_pred             CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291         91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL  170 (404)
Q Consensus        91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  170 (404)
                      .+++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.+..+.+..|..+++|+.|
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence            88999999999998888888878888888888888888888777777777777777777777777766666666677777


Q ss_pred             eccCCCCC
Q psy12291        171 KLQSNRIN  178 (404)
Q Consensus       171 ~l~~~~l~  178 (404)
                      ++++|.+.
T Consensus       158 ~L~~N~~~  165 (220)
T 2v9t_B          158 HLAQNPFI  165 (220)
T ss_dssp             ECCSSCEE
T ss_pred             EeCCCCcC
Confidence            77666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.91  E-value=3.6e-24  Score=196.61  Aligned_cols=187  Identities=32%  Similarity=0.455  Sum_probs=164.1

Q ss_pred             CCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcC-CCCCCCEEEccCCcCcccCccccc
Q psy12291         12 RCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFT-GLYKLTELKLRKNHLSELPGKLFI   90 (404)
Q Consensus        12 ~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~   90 (404)
                      ..||..|.|..  +.++|.+++++.+|..  ++..++.|++++|.|+.+.+..|. ++++|+.|+|++|+|..+++..|.
T Consensus        10 ~~Cp~~C~C~~--~~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~   85 (361)
T 2xot_A           10 VSCPANCLCAS--NILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV   85 (361)
T ss_dssp             TTCCTTCEEET--TEEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCCCCCCEECC--CEEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc
Confidence            36899999974  6899999999999986  778899999999999999888887 999999999999999999988899


Q ss_pred             CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccc---cCCccC
Q psy12291         91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTF---SGMYSL  167 (404)
Q Consensus        91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l---~~l~~L  167 (404)
                      .+++|++|++++|.++.+++..|.++++|++|+|++|.++.+.+..|.++++|+.|++++|.+..++...|   ..+++|
T Consensus        86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            99999999999999999998889999999999999999999988888999999999999999998887766   567889


Q ss_pred             cEEeccCCCCCCCCCCccCCCCC--CCeEecCCCcCc
Q psy12291        168 KRLKLQSNRINQLPPGIFDDLKY--LDFLSLRNNRLS  202 (404)
Q Consensus       168 ~~L~l~~~~l~~~~~~~~~~l~~--L~~L~l~~~~~~  202 (404)
                      +.|++++|.++.++...+..++.  ++.|++.+|.+.
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999999888887666666665  377888877654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.91  E-value=1.2e-23  Score=188.65  Aligned_cols=210  Identities=26%  Similarity=0.394  Sum_probs=157.0

Q ss_pred             EcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCC
Q psy12291         51 DLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE  130 (404)
Q Consensus        51 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  130 (404)
                      .+..+.+..+.  .+..+++|++|+++++.+..++.  +..+++|++|++++|.++.+++  +..+++|++|++++|.++
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence            34444444421  23456778888888888887763  5677888888888888887776  777888888888888887


Q ss_pred             cCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccC
Q psy12291        131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFN  210 (404)
Q Consensus       131 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  210 (404)
                      .++.  +..+++|+.|++++|.+..+.  .+..+++|++|++++|.++.+++  +..+++|+.|++++|.++.+.+  +.
T Consensus        99 ~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~  170 (308)
T 1h6u_A           99 NVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA  170 (308)
T ss_dssp             CCGG--GTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred             Cchh--hcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc
Confidence            7653  667788888888888877765  37777888888888888877665  6777888888888888776654  77


Q ss_pred             CCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcccccc
Q psy12291        211 YFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA  278 (404)
Q Consensus       211 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  278 (404)
                      .+++|+.|++++|.+..+++  +..+++|++|++++|.+..+++  +..+++|+.|++++|.++..+.
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence            78888888888888877653  6777888888888888877764  6778888888888888776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3.2e-23  Score=183.27  Aligned_cols=205  Identities=23%  Similarity=0.291  Sum_probs=171.4

Q ss_pred             CCCceEEecCCCCCccCCCC-CCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQ-IIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~-~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      +..+.++..++.++.++... ....++++|++++|.+..+.+..|.++++|++|++++|.+..++...|..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45889999999999998743 33468999999999999999889999999999999999999999888999999999999


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccCCCCCcCC-CccCCCCCCCCEEECCCCcccccccccccCCccCc----EEeccCC
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP-ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLK----RLKLQSN  175 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~----~L~l~~~  175 (404)
                      ++|.+..+++..+..+++|++|++++|.++.+. +..+..+++|+.|++++|.+..+.+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            999999998877999999999999999998864 55678899999999999999988777777666666    7888888


Q ss_pred             CCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCC
Q psy12291        176 RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS  227 (404)
Q Consensus       176 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  227 (404)
                      .++.+++..+.. .+|+.|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            888777766543 367777777777777666666667777777777766653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=3.7e-25  Score=203.38  Aligned_cols=254  Identities=19%  Similarity=0.240  Sum_probs=125.4

Q ss_pred             EEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCc----ccccCCC-CCCEEeCCCCCCcccCccccCCC-----CCC
Q psy12291         50 IDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPG----KLFISTI-NLSTMDLSQNLIKTLPSTFFKGA-----IRL  119 (404)
Q Consensus        50 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L  119 (404)
                      ++++.|++.+..+..+...++|++|++++|.++..+.    ..|..++ +|++|++++|.++......+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666666555555555557777777777666665    4555566 66777777666665544333332     555


Q ss_pred             cEEEccCCCCCcCCCcc----CCCC-CCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCC-CCCCCe
Q psy12291        120 TVVQLSYNAIESLPANV----FHDL-ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD-LKYLDF  193 (404)
Q Consensus       120 ~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~-l~~L~~  193 (404)
                      ++|++++|.++......    +..+ ++|+.|++++|.+.......+..                    .+.. .++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence            55555555555433221    1222 44555555555444433322211                    0111 124444


Q ss_pred             EecCCCcCcccCC----CccCCCC-CCCEEECCCCcCCCCChhhh----cCC-CCCcEEECCCCCCcccCcc----cccC
Q psy12291        194 LSLRNNRLSFIRP----GLFNYFK-HLTFLELSENWISSLNGDEF----SQL-TSLKELHLGQNYIETIPAG----SFAN  259 (404)
Q Consensus       194 L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~l~~~~~~----~~~~  259 (404)
                      |++++|.++....    ..+...+ +|++|++++|.+.......+    ... ++|++|++++|.+......    .+..
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            4444444432111    1112222 55566666665555443322    233 3666666666666552211    1222


Q ss_pred             -CCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccCcc-------ccCCCCCCcEEeCCCCCCcc
Q psy12291        260 -LQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLDTK-------AFEPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       260 -l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~~-------~~~~l~~L~~L~l~~n~l~~  323 (404)
                       .++|+.|+|++|.+++.+.    ..+..+++|++|++++|.+..+...       .+..+++|+.|++++|++..
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence             3466666666666665544    2234556666666666664444332       23344444455555554443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=4.2e-25  Score=202.99  Aligned_cols=267  Identities=17%  Similarity=0.193  Sum_probs=168.3

Q ss_pred             EEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCc----cccCCCC-CCcEEEccCCCCCcCCCccCCCCCCCCEEEC
Q psy12291         74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPS----TFFKGAI-RLTVVQLSYNAIESLPANVFHDLISLEELDL  148 (404)
Q Consensus        74 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  148 (404)
                      +.++.+.+.+..+..+...++|++|++++|.++..+.    ..|..++ +|++|++++|.++......+..+        
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~--------   74 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI--------   74 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence            3455555554444433444445555555555555544    3344444 45555555554444332222221        


Q ss_pred             CCCcccccccccccC-CccCcEEeccCCCCCCCCCCc----cCCC-CCCCeEecCCCcCcccCCCc----cCC-CCCCCE
Q psy12291        149 SQNVLTSIQYGTFSG-MYSLKRLKLQSNRINQLPPGI----FDDL-KYLDFLSLRNNRLSFIRPGL----FNY-FKHLTF  217 (404)
Q Consensus       149 ~~~~l~~~~~~~l~~-l~~L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~  217 (404)
                                  +.. .++|++|++++|.++......    +..+ ++|++|++++|.++......    +.. .++|++
T Consensus        75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  142 (362)
T 3goz_A           75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS  142 (362)
T ss_dssp             ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred             ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence                        001 145555555555554433321    2222 56666666666665544322    333 369999


Q ss_pred             EECCCCcCCCCChhh----hcCCC-CCcEEECCCCCCcccCccc----ccCC-CCCcEEECcCCCccccccc----cccC
Q psy12291        218 LELSENWISSLNGDE----FSQLT-SLKELHLGQNYIETIPAGS----FANL-QSLEKLFLYSNNIQELHAG----TFAG  283 (404)
Q Consensus       218 L~l~~~~~~~~~~~~----~~~l~-~L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~----~~~~  283 (404)
                      |++++|.+.......    +..++ +|++|++++|.+.......    +..+ ++|+.|+|++|.+++....    .+..
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            999999998665443    34555 9999999999998776533    3445 5999999999999984332    3333


Q ss_pred             -CCCCCeeecccccccccCc----cccCCCCCCcEEeCCCCCCcccCcc-------cccCCCCCcEEEccCCccccccCc
Q psy12291        284 -LTNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQYLATD-------SLSLLPNLITLKLAKNPWHCDCAI  351 (404)
Q Consensus       284 -~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~l~l~~Np~~C~c~~  351 (404)
                       .++|++|+|++|+++..+.    ..+..+++|+.|++++|.+..+...       .+..+++|+.|++++|++... ..
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~-~~  301 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS-HS  301 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG-GC
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc-ch
Confidence             4699999999999998766    4457789999999999997666553       456778899999999998765 34


Q ss_pred             HHHHHHHHhc
Q psy12291        352 LYMARWLRAN  361 (404)
Q Consensus       352 ~~~~~~~~~~  361 (404)
                      ..+..+++..
T Consensus       302 ~~~~~~l~~~  311 (362)
T 3goz_A          302 IPISNLIREL  311 (362)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHC
Confidence            4555666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.90  E-value=6.3e-23  Score=174.65  Aligned_cols=162  Identities=26%  Similarity=0.463  Sum_probs=132.5

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccCh-hhcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSK-DAFTGLYKLTELKLRKNHLSELPGKLFIS   91 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~   91 (404)
                      .||..|.|..  +.++|.++.++.+|..  ++..++.|++++|.++.+.+ ..|.++++|+.|++++|+++.+++..|..
T Consensus         4 ~CP~~C~C~~--~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~   79 (220)
T 2v70_A            4 ACPEKCRCEG--TTVDCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG   79 (220)
T ss_dssp             CCCTTCEEET--TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCCCCCEECC--CEeEeCCCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC
Confidence            6899999985  5899999999999976  67788999999999988843 55788888999999998888888878888


Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEe
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK  171 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  171 (404)
                      +++|++|++++|.++.+++..|.++++|++|++++|.++.+++..|..+++|+.|++++|.+..+.+..|..+++|+.|+
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence            88888888888888888887788888888888888888877777777777777777777777777666677777777777


Q ss_pred             ccCCCCC
Q psy12291        172 LQSNRIN  178 (404)
Q Consensus       172 l~~~~l~  178 (404)
                      +++|.+.
T Consensus       160 L~~N~l~  166 (220)
T 2v70_A          160 LLANPFN  166 (220)
T ss_dssp             CCSCCEE
T ss_pred             ecCcCCc
Confidence            7776554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=4.1e-23  Score=185.63  Aligned_cols=135  Identities=16%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             CCcEEEccCCCCCcCCCccC--CCCCCCCEEECCCCccccccc----ccccCCccCcEEeccCCCCCCCCCCccCCCCCC
Q psy12291        118 RLTVVQLSYNAIESLPANVF--HDLISLEELDLSQNVLTSIQY----GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL  191 (404)
Q Consensus       118 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L  191 (404)
                      +|++|++++|.+....+..+  ..+++|++|++++|.+....+    ..+..+++|++|++++|.+..+++..|..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            34444444444443333222  344444444444444443211    122345566666666666665555555556666


Q ss_pred             CeEecCCCcCcc---cC-CCccCCCCCCCEEECCCCcCCCCChh---hhcCCCCCcEEECCCCCCccc
Q psy12291        192 DFLSLRNNRLSF---IR-PGLFNYFKHLTFLELSENWISSLNGD---EFSQLTSLKELHLGQNYIETI  252 (404)
Q Consensus       192 ~~L~l~~~~~~~---~~-~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~  252 (404)
                      ++|++++|++..   +. ...+..+++|++|++++|.++.++..   .+..+++|++|++++|.+...
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~  239 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT  239 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence            666666665432   11 11123444455555555544433211   123444555555555554444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=4e-23  Score=185.69  Aligned_cols=224  Identities=19%  Similarity=0.078  Sum_probs=178.4

Q ss_pred             CCcEEEccCCCCCcCCC---ccCCCCCCCCEEECCCCcccccccccc--cCCccCcEEeccCCCCCCCCC----CccCCC
Q psy12291        118 RLTVVQLSYNAIESLPA---NVFHDLISLEELDLSQNVLTSIQYGTF--SGMYSLKRLKLQSNRINQLPP----GIFDDL  188 (404)
Q Consensus       118 ~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~~~l~~~~~~~l--~~l~~L~~L~l~~~~l~~~~~----~~~~~l  188 (404)
                      .++.+.+.++.+.....   ..+..+++|++|++++|.+....+..+  ..+++|++|++++|.++...+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            45556665555432100   001234679999999999998877777  889999999999999986433    234568


Q ss_pred             CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCC---C-hhhhcCCCCCcEEECCCCCCcccCcc---cccCCC
Q psy12291        189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSL---N-GDEFSQLTSLKELHLGQNYIETIPAG---SFANLQ  261 (404)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~-~~~~~~l~~L~~L~l~~~~l~~~~~~---~~~~l~  261 (404)
                      ++|++|++++|.+..+.+..+..+++|++|++++|.+...   + ...+..+++|++|++++|.++.++..   .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            9999999999999999888999999999999999987642   1 12346789999999999999866542   356789


Q ss_pred             CCcEEECcCCCccccccccccCC---CCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEE
Q psy12291        262 SLEKLFLYSNNIQELHAGTFAGL---TNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITL  338 (404)
Q Consensus       262 ~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  338 (404)
                      +|++|++++|.++.+.+..+..+   ++|++|++++|+++.++...+   ++|++|++++|++++++.  +..+++|+.|
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L  299 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNL  299 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCE
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEE
Confidence            99999999999999865555555   799999999999998865443   799999999999999854  6788999999


Q ss_pred             EccCCccc
Q psy12291        339 KLAKNPWH  346 (404)
Q Consensus       339 ~l~~Np~~  346 (404)
                      ++++|++.
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            99999984

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.89  E-value=1.6e-21  Score=180.43  Aligned_cols=265  Identities=16%  Similarity=0.266  Sum_probs=217.3

Q ss_pred             CCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEE
Q psy12291         67 GLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEEL  146 (404)
Q Consensus        67 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  146 (404)
                      .+..++.+.+.+ .++.|+..+|.++ +|+.+.+..+ ++.++..+|.++ +|+.+.+.. .++.+...+|.++++|+.+
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            346777777765 4778888888875 6888888766 788888888774 688888876 6778888888888888888


Q ss_pred             ECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291        147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS  226 (404)
Q Consensus       147 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  226 (404)
                      ++..|.+..+...+|. ..+|+.+.+..+ +..++..+|..+++|+.+.+..+ ++.+....|.+ .+|+.+.+. +.+.
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence            8888888888888887 578888888744 78888888888888888888764 66677777777 788888884 4567


Q ss_pred             CCChhhhcCCCCCcEEECCCCCCc-----ccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccC
Q psy12291        227 SLNGDEFSQLTSLKELHLGQNYIE-----TIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD  301 (404)
Q Consensus       227 ~~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~  301 (404)
                      .+...+|.++++|+.+.+.++.+.     .++...|..+++|+.+.+. +.++.+...+|.++++|+.+.|.. .++.++
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEc
Confidence            777788889999999998887665     6888889999999999998 568999999999999999999955 488999


Q ss_pred             ccccCCCCCCcEEeCCCCCCcccCcccccCCC-CCcEEEccCCc
Q psy12291        302 TKAFEPMLHLKKLQLDSNKLQYLATDSLSLLP-NLITLKLAKNP  344 (404)
Q Consensus       302 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l~~Np  344 (404)
                      ..+|..+ +|+.+++.+|.+..+....+..++ +++.|++-.+.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            9999999 999999999999999888888885 78899887654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.88  E-value=2.6e-21  Score=179.04  Aligned_cols=266  Identities=16%  Similarity=0.247  Sum_probs=228.7

Q ss_pred             CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEc
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQL  124 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l  124 (404)
                      ..++.+.+.. .++.+...+|.+. +|+.+.+..+ +..++..+|.++ +|+.+.+.. .++.++..+|.++.+|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            3455666654 5778888889886 7999999876 889999999885 699999986 788999899999999999999


Q ss_pred             cCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc
Q psy12291        125 SYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI  204 (404)
Q Consensus       125 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  204 (404)
                      ..|.++.++...|. ..+|+.+.+.. .+..+...+|.++++|+.+.+..+ ++.+...+|.. .+|+.+.+ .+.++.+
T Consensus       188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I  262 (401)
T 4fdw_A          188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNI  262 (401)
T ss_dssp             TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEE
T ss_pred             CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEE
Confidence            99999999999887 58999999985 488888899999999999999874 78888888988 78999999 4567788


Q ss_pred             CCCccCCCCCCCEEECCCCcCC-----CCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccc
Q psy12291        205 RPGLFNYFKHLTFLELSENWIS-----SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG  279 (404)
Q Consensus       205 ~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  279 (404)
                      ....|..+++|+.+.+.++.+.     .++..+|.++++|+.+.+. +.+..++...|..+++|+.+.+.. .++.+...
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccEEcHH
Confidence            8889999999999999887665     5777889999999999999 458999998999999999999955 48899999


Q ss_pred             cccCCCCCCeeecccccccccCccccCCCC-CCcEEeCCCCCCcc
Q psy12291        280 TFAGLTNLTALFLNNNLLRYLDTKAFEPML-HLKKLQLDSNKLQY  323 (404)
Q Consensus       280 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~  323 (404)
                      +|.++ +|+.+++++|.+..+....|..++ +++.|.+..+.+..
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~  384 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEK  384 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHH
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHH
Confidence            99999 999999999999999888898884 78889887766443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=1.1e-22  Score=195.53  Aligned_cols=178  Identities=26%  Similarity=0.394  Sum_probs=109.8

Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ  173 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  173 (404)
                      +|++|++++|.++.+|...   +++|++|++++|.++.++    ..+++|+.|++++|.+..++.  +.+  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence            7888888888888887754   367888888888888777    235678888888887777554  443  77777777


Q ss_pred             CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccC
Q psy12291        174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIP  253 (404)
Q Consensus       174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  253 (404)
                      +|.++.++.    .+++|+.|++++|.++.++.    .+++|++|++++|.++.++.  +.  ++|+.|++++|.++.+|
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence            777777665    35667777777777665433    34566666666666665543  33  55666666666655555


Q ss_pred             cccccCCCCC-------cEEECcCCCccccccccccCCCCCCeeecccccccc
Q psy12291        254 AGSFANLQSL-------EKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY  299 (404)
Q Consensus       254 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~  299 (404)
                      .  +..  +|       +.|+|++|.|+.++...+ .+++|++|+|++|.++.
T Consensus       197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          197 A--VPV--RNHHSEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             C--CC----------CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCCH
T ss_pred             h--HHH--hhhcccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCCC
Confidence            4  221  33       455555555544433222 24444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=1.9e-23  Score=189.33  Aligned_cols=284  Identities=15%  Similarity=0.102  Sum_probs=199.5

Q ss_pred             CeeEEEcCCCCCcccChhhcCC-CCCCCEEEccCCcCc--ccCcccccCCCCCCEEeCCCCCCcccCccccCC-------
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTG-LYKLTELKLRKNHLS--ELPGKLFISTINLSTMDLSQNLIKTLPSTFFKG-------  115 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~-~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------  115 (404)
                      +++.|.++++ +.......+.. +++|+.|+|++|++.  ......+   +.++.+.+..+   .++..+|.+       
T Consensus        26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~---~I~~~aF~~~~~~~~~   98 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN---FVPAYAFSNVVNGVTK   98 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT---EECTTTTEEEETTEEE
T ss_pred             ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc---ccCHHHhccccccccc
Confidence            5777877753 22222223333 677888888888887  4433332   22444444444   566677777       


Q ss_pred             -CCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCC----CCCCCCCCccCCCCC
Q psy12291        116 -AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN----RINQLPPGIFDDLKY  190 (404)
Q Consensus       116 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~----~l~~~~~~~~~~l~~  190 (404)
                       +++|+.+++.. .++.++..+|.++++|+.|++++|.+..+...+|.++.++..+.....    ....+....|..+..
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence             88888888888 788888888888888888888888888888888887776666665552    233445555655666


Q ss_pred             CC-eEecCCCcC-cccCCCccCCCCCCCEEECCCCcCCCCChhhh-cCCCCCcEEECCCCCCcccCcccccCCCCCcEEE
Q psy12291        191 LD-FLSLRNNRL-SFIRPGLFNYFKHLTFLELSENWISSLNGDEF-SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF  267 (404)
Q Consensus       191 L~-~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  267 (404)
                      |+ .+.+..... .......-....++..+.+.+.- .......+ ..+++|+.+++++|.+..++...|..+++|+.++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~  256 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK  256 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence            65 344432211 00000001123455666665542 11111122 2378999999999999999999999999999999


Q ss_pred             CcCCCccccccccccCCCCCC-eeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEc
Q psy12291        268 LYSNNIQELHAGTFAGLTNLT-ALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL  340 (404)
Q Consensus       268 L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  340 (404)
                      +.+| ++.++..+|.++++|+ .+++.+ .++.++..+|..+++|+.+++++|.++.++.+.|..+++|+.++.
T Consensus       257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9987 9999999999999999 999988 899999999999999999999999999999999999999998864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=4.1e-21  Score=162.17  Aligned_cols=171  Identities=33%  Similarity=0.552  Sum_probs=137.2

Q ss_pred             CeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCC
Q psy12291        192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN  271 (404)
Q Consensus       192 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n  271 (404)
                      +.++.+++.++.++..   ..+++++|++++|.+..+++..+..+++|++|++++|.+..++...+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            3445555555444322   2346777777777777776666777888888888888888887777788888999999988


Q ss_pred             CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccC-
Q psy12291        272 NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-  350 (404)
Q Consensus       272 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-  350 (404)
                      .++.++...|..+++|++|++++|+++.+++..+..+++|+.|++++|+++++++..+..+++|+.|++++|+|.|+|+ 
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  166 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  166 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCC
Confidence            8888888778889999999999999998888888899999999999999999988888999999999999999999997 


Q ss_pred             cHHHHHHHHhccCcc
Q psy12291        351 ILYMARWLRANRRKV  365 (404)
Q Consensus       351 ~~~~~~~~~~~~~~~  365 (404)
                      +.++..|.......+
T Consensus       167 l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          167 IRYLSEWINKHSGVV  181 (208)
T ss_dssp             THHHHHHHHHCTTTB
T ss_pred             HHHHHHHHHhCCcee
Confidence            677777877655444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.2e-23  Score=189.73  Aligned_cols=254  Identities=16%  Similarity=0.145  Sum_probs=127.2

Q ss_pred             CeeEEEcCCCCCcccChhhcCCC--CCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCccc-CccccCCCCCCcEE
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGL--YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL-PSTFFKGAIRLTVV  122 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L  122 (404)
                      ..++++++++.+.   +..+..+  ++++.|++++|.+.+..... ..+++|++|++++|.++.. .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            3566666666554   2334444  56677777776666555443 3566677777766665532 22235566666666


Q ss_pred             EccCCCCCcCCCccCCCCCCCCEEECCCC-ccccc-ccccccCCccCcEEeccCC-CCCCC-CCCccCCCC-CCCeEecC
Q psy12291        123 QLSYNAIESLPANVFHDLISLEELDLSQN-VLTSI-QYGTFSGMYSLKRLKLQSN-RINQL-PPGIFDDLK-YLDFLSLR  197 (404)
Q Consensus       123 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~~-~l~~~-~~~~~~~l~-~L~~L~l~  197 (404)
                      ++++|.++......+..+++|++|++++| .+... .+..+.++++|++|++++| .++.. .+..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            66666655333333445566666666666 34431 1122444555555655555 44431 111223344 44444444


Q ss_pred             CCcCcccCCCccCCCCCCCEEECCCCcCC-CCChhhhcCCCCCcEEECCCCC-CcccCcccccCCCCCcEEECcCCC-cc
Q psy12291        198 NNRLSFIRPGLFNYFKHLTFLELSENWIS-SLNGDEFSQLTSLKELHLGQNY-IETIPAGSFANLQSLEKLFLYSNN-IQ  274 (404)
Q Consensus       198 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~n~-l~  274 (404)
                      +|.+                      .++ ...+..+..+++|++|++++|. ++......+..+++|+.|++++|. +.
T Consensus       204 ~~~~----------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          204 GYRK----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             SCGG----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             CCcc----------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence            4421                      222 1111233445556666666555 333222244555666666666653 22


Q ss_pred             ccccccccCCCCCCeeecccccccccCccccCCC-CCCcEEeCCCCCCcccCcccc
Q psy12291        275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM-LHLKKLQLDSNKLQYLATDSL  329 (404)
Q Consensus       275 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~  329 (404)
                      ......+..+++|++|++++| ++   .+.+..+ ..++.|++++|+++++.+..+
T Consensus       262 ~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          262 PETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             HHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCcc
Confidence            222224555666666666666 22   2222222 234555566666666555433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.9e-23  Score=190.16  Aligned_cols=244  Identities=17%  Similarity=0.150  Sum_probs=161.4

Q ss_pred             CCEEeCCCCCCcccCccccCCC--CCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccccc-ccccccCCccCcEEe
Q psy12291         95 LSTMDLSQNLIKTLPSTFFKGA--IRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI-QYGTFSGMYSLKRLK  171 (404)
Q Consensus        95 L~~L~l~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~l~~l~~L~~L~  171 (404)
                      ++.++++++.+.   +..+..+  ++++.|++++|.+....... ..+++|++|++++|.+... .+..+..+++|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            555555555444   1223333  45666666666655544443 3456666777766665543 233455666777777


Q ss_pred             ccCCCCCCCCCCccCCCCCCCeEecCCC-cCccc-CCCccCCCCCCCEEECCCC-cCCCC-ChhhhcCCC-CCcEEECCC
Q psy12291        172 LQSNRINQLPPGIFDDLKYLDFLSLRNN-RLSFI-RPGLFNYFKHLTFLELSEN-WISSL-NGDEFSQLT-SLKELHLGQ  246 (404)
Q Consensus       172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~  246 (404)
                      +++|.++...+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .++.. .+..+..++ +|++|++++
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~  204 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  204 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence            7777665444444566777777777777 45531 2334567788899999888 77653 235577889 999999999


Q ss_pred             CC--Cc--ccCcccccCCCCCcEEECcCCC-ccccccccccCCCCCCeeeccccc-ccccCccccCCCCCCcEEeCCCCC
Q psy12291        247 NY--IE--TIPAGSFANLQSLEKLFLYSNN-IQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPMLHLKKLQLDSNK  320 (404)
Q Consensus       247 ~~--l~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~  320 (404)
                      |.  +.  .++. .+..+++|+.|++++|. +++.....+..+++|++|++++|. +.......+..+++|+.|++++| 
T Consensus       205 ~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-  282 (336)
T 2ast_B          205 YRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-  282 (336)
T ss_dssp             CGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred             CcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence            94  43  3333 56678999999999998 776666678899999999999995 43333346788999999999999 


Q ss_pred             CcccCcccccCC-CCCcEEEccCCcccc
Q psy12291        321 LQYLATDSLSLL-PNLITLKLAKNPWHC  347 (404)
Q Consensus       321 l~~~~~~~~~~l-~~L~~l~l~~Np~~C  347 (404)
                      +   +...+..+ .++..|++++|.+..
T Consensus       283 i---~~~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          283 V---PDGTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             S---CTTCHHHHHHHSTTSEESCCCSCC
T ss_pred             c---CHHHHHHHHhhCcceEEecccCcc
Confidence            3   33333333 235566688887743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=8e-24  Score=196.34  Aligned_cols=254  Identities=20%  Similarity=0.183  Sum_probs=155.8

Q ss_pred             ccCCCCCCEEeCCCCCCcccCc----cccCCCCCCcEEEccCCCCCcCCCc----c------CCCCCCCCEEECCCCccc
Q psy12291         89 FISTINLSTMDLSQNLIKTLPS----TFFKGAIRLTVVQLSYNAIESLPAN----V------FHDLISLEELDLSQNVLT  154 (404)
Q Consensus        89 ~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~----~------~~~l~~L~~L~l~~~~l~  154 (404)
                      +..+++|++|++++|.++....    ..+..+++|++|++++|.+..+...    .      +..+++|++|++++|.+.
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            3566778888888887765322    1255677777777777655433211    1      234455555555555554


Q ss_pred             cc----ccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCC---------CCCCEEECC
Q psy12291        155 SI----QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYF---------KHLTFLELS  221 (404)
Q Consensus       155 ~~----~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---------~~L~~L~l~  221 (404)
                      ..    .+..+..+++|++|++++|.++......+.                    ..+..+         ++|++|+++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCcEEECC
Confidence            41    122334444555555555544322111111                    111112         677777777


Q ss_pred             CCcCCCCCh----hhhcCCCCCcEEECCCCCCcc-----cCcccccCCCCCcEEECcCCCccc----cccccccCCCCCC
Q psy12291        222 ENWISSLNG----DEFSQLTSLKELHLGQNYIET-----IPAGSFANLQSLEKLFLYSNNIQE----LHAGTFAGLTNLT  288 (404)
Q Consensus       222 ~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~  288 (404)
                      +|.+.....    ..+..+++|++|++++|.+..     +.+..+..+++|+.|+|++|.++.    ..+..+..+++|+
T Consensus       168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            777653221    345567788888888887762     222246678888888888888852    2234667788899


Q ss_pred             eeecccccccccCc----ccc--CCCCCCcEEeCCCCCCcc-----cCcccccCCCCCcEEEccCCccccccC-cHHHHH
Q psy12291        289 ALFLNNNLLRYLDT----KAF--EPMLHLKKLQLDSNKLQY-----LATDSLSLLPNLITLKLAKNPWHCDCA-ILYMAR  356 (404)
Q Consensus       289 ~L~l~~n~i~~~~~----~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~  356 (404)
                      +|+|++|+++....    ..+  ..+++|+.|+|++|.++.     ++......+++|+.|++++|++..... ...+..
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~  327 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE  327 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence            99999998876532    344  337899999999999988     544333668999999999999987665 445555


Q ss_pred             HHHhcc
Q psy12291        357 WLRANR  362 (404)
Q Consensus       357 ~~~~~~  362 (404)
                      .+...+
T Consensus       328 ~l~~~~  333 (386)
T 2ca6_A          328 VFSTRG  333 (386)
T ss_dssp             HHHHHT
T ss_pred             HhhhcC
Confidence            555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.87  E-value=2.3e-21  Score=157.86  Aligned_cols=150  Identities=29%  Similarity=0.579  Sum_probs=131.6

Q ss_pred             CCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCC
Q psy12291        238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD  317 (404)
Q Consensus       238 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  317 (404)
                      +.+.++++++.+..+|...   .++|+.|+|++|.|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578999999999988643   3789999999999999998899999999999999999999999999999999999999


Q ss_pred             CCCCcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCccc------CCCCeeCCCCCCCCCcccCCCCcC
Q psy12291        318 SNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVW------DSKPTCRGPGNLGGKSVEDMSFDD  390 (404)
Q Consensus       318 ~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~------~~~~~C~~p~~l~~~~l~~~~~~~  390 (404)
                      +|+++.+++..+..+++|+.|+|++|||.|+|. +.|+..|+......+.      ....+|++|    |.++.+++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~~~  162 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT----NTPVRAVTEAS  162 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-----CCBGGGCCSTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC----Cccchhccccc
Confidence            999999999889999999999999999999996 9999999998876653      226889886    67888888777


Q ss_pred             CCCc
Q psy12291        391 LCEG  394 (404)
Q Consensus       391 ~C~~  394 (404)
                      .|..
T Consensus       163 ~~~~  166 (170)
T 3g39_A          163 TSPS  166 (170)
T ss_dssp             CBGG
T ss_pred             cCCC
Confidence            6643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.87  E-value=7.4e-21  Score=162.93  Aligned_cols=158  Identities=32%  Similarity=0.504  Sum_probs=132.4

Q ss_pred             CCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCC
Q psy12291         16 GPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINL   95 (404)
Q Consensus        16 ~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L   95 (404)
                      ..|.|.  ...++|.++++..+|..  ++.++++|++++|.+..+.+..|.++++|++|++++|++..++...|..+++|
T Consensus        15 ~~~~Cs--~~~v~c~~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L   90 (229)
T 3e6j_A           15 SQCSCS--GTTVDCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL   90 (229)
T ss_dssp             TTCEEE--TTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCEEe--CCEeEccCCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc
Confidence            456665  67899999999999986  77899999999999999988889999999999999999999988888899999


Q ss_pred             CEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCC
Q psy12291         96 STMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSN  175 (404)
Q Consensus        96 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  175 (404)
                      ++|++++|.++.+++..|..+++|++|++++|.++.++.. +..+++|+.|++++|.+..+....|..+++|+.|++.+|
T Consensus        91 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A           91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            9999999999988888888888999999998888877654 356777888888777777776666777777777777777


Q ss_pred             CCC
Q psy12291        176 RIN  178 (404)
Q Consensus       176 ~l~  178 (404)
                      .+.
T Consensus       170 ~~~  172 (229)
T 3e6j_A          170 PWD  172 (229)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.86  E-value=1.5e-20  Score=154.40  Aligned_cols=164  Identities=35%  Similarity=0.602  Sum_probs=137.2

Q ss_pred             CCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccc
Q psy12291        215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN  294 (404)
Q Consensus       215 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~  294 (404)
                      .+.++++++.+..++..   ..++|++|++++|.+..++...+..+++|+.|++++|.++.++...|..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45677777777766532   235788888888888888877778889999999999999988888888999999999999


Q ss_pred             ccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCcccCCCCeeC
Q psy12291        295 NLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVWDSKPTCR  373 (404)
Q Consensus       295 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~~~~~~C~  373 (404)
                      |+++.+++..+..+++|++|++++|+++.++...+..+++|+.|++++|+|.|+|+ +.++..|+....... .....|+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~-~~~~~C~  164 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-QGSAKCS  164 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGE-ESCCBBT
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCcccc-ccCcEeC
Confidence            99999988888899999999999999999998888899999999999999999998 788999998775533 3578898


Q ss_pred             CCCCCCCCcccCC
Q psy12291        374 GPGNLGGKSVEDM  386 (404)
Q Consensus       374 ~p~~l~~~~l~~~  386 (404)
                      .+    |+++.++
T Consensus       165 ~~----~~~~~~i  173 (177)
T 2o6r_A          165 GS----GKPVRSI  173 (177)
T ss_dssp             TT----CCBGGGC
T ss_pred             CC----Cccccee
Confidence            74    5566655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=3.9e-23  Score=191.72  Aligned_cols=243  Identities=20%  Similarity=0.191  Sum_probs=139.4

Q ss_pred             hhcCCCCCCCEEEccCCcCcccCcc----cccCCCCCCEEeCCCCCCccc----Cccc------cCCCCCCcEEEccCCC
Q psy12291         63 DAFTGLYKLTELKLRKNHLSELPGK----LFISTINLSTMDLSQNLIKTL----PSTF------FKGAIRLTVVQLSYNA  128 (404)
Q Consensus        63 ~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~n~l~~~----~~~~------~~~~~~L~~L~l~~n~  128 (404)
                      ..+..+++|++|++++|.+......    .|..+++|++|++++|.+..+    |...      +..+++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            3456678889999998888754332    256788899999988765533    3221      4678899999999998


Q ss_pred             CCcC----CCccCCCCCCCCEEECCCCcccccccccccC----C---------ccCcEEeccCCCCCCCCC----CccCC
Q psy12291        129 IESL----PANVFHDLISLEELDLSQNVLTSIQYGTFSG----M---------YSLKRLKLQSNRINQLPP----GIFDD  187 (404)
Q Consensus       129 l~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~----l---------~~L~~L~l~~~~l~~~~~----~~~~~  187 (404)
                      ++..    .+..+..+++|++|++++|.+.......+..    +         ++|++|++++|.++....    ..+..
T Consensus       106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  185 (386)
T 2ca6_A          106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS  185 (386)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence            8762    1224567789999999999886544333332    2         677777777776652111    12334


Q ss_pred             CCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc-----ccCcccccCCCC
Q psy12291        188 LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-----TIPAGSFANLQS  262 (404)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~~~~l~~  262 (404)
                      +++|++|++++|.++.....                   ...+..+..+++|+.|++++|.++     .++. .+..+++
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~-------------------~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~  245 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIE-------------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPN  245 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHH-------------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTT
T ss_pred             CCCcCEEECcCCCCCHhHHH-------------------HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCC
Confidence            45555555555554411000                   011113344455555555555542     2222 3445555


Q ss_pred             CcEEECcCCCcccccc----ccc--cCCCCCCeeecccccccc-----cCccccCCCCCCcEEeCCCCCCcccC
Q psy12291        263 LEKLFLYSNNIQELHA----GTF--AGLTNLTALFLNNNLLRY-----LDTKAFEPMLHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       263 L~~L~L~~n~l~~~~~----~~~--~~~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~n~l~~~~  325 (404)
                      |+.|+|++|.++....    ..+  ..+++|++|+|++|.++.     ++...+..+++|+.|++++|+++...
T Consensus       246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            5666666555554311    222  225666666666666655     32222244566677777777666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=6.6e-22  Score=179.23  Aligned_cols=262  Identities=18%  Similarity=0.225  Sum_probs=199.7

Q ss_pred             CCCeeEEEcCCCCCc--ccChhhcCCCCCCCEEEccCCcCcccCcccccC--------CCCCCEEeCCCCCCcccCcccc
Q psy12291         44 PVDIRVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS--------TINLSTMDLSQNLIKTLPSTFF  113 (404)
Q Consensus        44 ~~~l~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--------~~~L~~L~l~~n~l~~~~~~~~  113 (404)
                      ..+++.||+++|++.  ......+   +.++.+.+..+   .++..+|.+        +++|+.|++.+ .++.|+..+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCccccc---ccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            457999999999988  3332222   23445555554   678888988        99999999999 8999999999


Q ss_pred             CCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCC----cccccccccccCCccCc-EEeccCCCCCCCCCCcc---
Q psy12291        114 KGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQN----VLTSIQYGTFSGMYSLK-RLKLQSNRINQLPPGIF---  185 (404)
Q Consensus       114 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~----~l~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~---  185 (404)
                      .++++|+.+++++|.+..++..+|.++.++..+.....    ....+...+|.++..|+ .+.+....  .++...+   
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~~~~~~~  198 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLEDEIMKAG  198 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHHHHHHTT
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHHHHhhcc
Confidence            99999999999999999999999998877777776653    23345556677777777 45444321  1111111   


Q ss_pred             CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCc-
Q psy12291        186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE-  264 (404)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~-  264 (404)
                      ....++..+.+.+.-...........+++|+.+++++|.+..++..+|.++.+|+.+++.++ +..++...|..+++|+ 
T Consensus       199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence            12455666666544211110111123689999999999999999999999999999999997 8899999999999999 


Q ss_pred             EEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeC
Q psy12291        265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQL  316 (404)
Q Consensus       265 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  316 (404)
                      .+++.+ .++.++..+|.++++|+.+++++|+++.++..+|.++++|+.++.
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999988 899999999999999999999999999999999999999998864

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.85  E-value=1.8e-20  Score=153.07  Aligned_cols=149  Identities=26%  Similarity=0.544  Sum_probs=128.9

Q ss_pred             CcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCC
Q psy12291        239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS  318 (404)
Q Consensus       239 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  318 (404)
                      -+.++++++.+..+|...   .++|+.|+|++|.++.+++..|.++++|++|+|++|+++.++...|..+++|+.|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            468899999999888743   27899999999999999888999999999999999999999888899999999999999


Q ss_pred             CCCcccCcccccCCCCCcEEEccCCccccccC-cHHHHHHHHhccCccc---------CCCCeeCCCCCCCCCcccCCCC
Q psy12291        319 NKLQYLATDSLSLLPNLITLKLAKNPWHCDCA-ILYMARWLRANRRKVW---------DSKPTCRGPGNLGGKSVEDMSF  388 (404)
Q Consensus       319 n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~~~~~~~---------~~~~~C~~p~~l~~~~l~~~~~  388 (404)
                      |+++.+++..+..+++|+.|+|++|||.|+|. +.|+..|+......+.         .....|+++    |.++.+++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~  166 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT----NTPVRAVTE  166 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT----CCBGGGCCG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC----Cccceeccc
Confidence            99999999889999999999999999999996 8899999988765442         225778875    677888877


Q ss_pred             cCCCCc
Q psy12291        389 DDLCEG  394 (404)
Q Consensus       389 ~~~C~~  394 (404)
                      ...|+.
T Consensus       167 ~~~~p~  172 (174)
T 2r9u_A          167 ASTSPS  172 (174)
T ss_dssp             GGCBTT
T ss_pred             cccCcC
Confidence            666643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=2.2e-20  Score=165.97  Aligned_cols=188  Identities=26%  Similarity=0.307  Sum_probs=104.2

Q ss_pred             EEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcc
Q psy12291         74 LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVL  153 (404)
Q Consensus        74 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l  153 (404)
                      +.+....+.++..  +..+++|++|++++|.+..++.  +..+++|++|++++|.++.++.  +..+++|+.|++++|.+
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            3444444444322  2345667777777776666653  5566666666666666666554  45566666666666665


Q ss_pred             cccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhh
Q psy12291        154 TSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEF  233 (404)
Q Consensus       154 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  233 (404)
                      ..+.  .+..+++|++|++++|.++.++                          .+..+++|+.|++++|.+..+  ..+
T Consensus       103 ~~~~--~l~~l~~L~~L~L~~n~i~~~~--------------------------~l~~l~~L~~L~l~~n~l~~~--~~l  152 (291)
T 1h6t_A          103 KDLS--SLKDLKKLKSLSLEHNGISDIN--------------------------GLVHLPQLESLYLGNNKITDI--TVL  152 (291)
T ss_dssp             CCGG--GGTTCTTCCEEECTTSCCCCCG--------------------------GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred             CCCh--hhccCCCCCEEECCCCcCCCCh--------------------------hhcCCCCCCEEEccCCcCCcc--hhh
Confidence            5543  2455555555555555554432                          233344444444444444444  234


Q ss_pred             cCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccC
Q psy12291        234 SQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLD  301 (404)
Q Consensus       234 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~  301 (404)
                      ..+++|++|++++|.+..+++  +..+++|+.|++++|.+++++.  +..+++|+.|++++|+++..+
T Consensus       153 ~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          153 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCC
T ss_pred             ccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCc
Confidence            555556666666665555543  5555666666666666665532  555666666666666655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=8.6e-20  Score=175.46  Aligned_cols=186  Identities=26%  Similarity=0.378  Sum_probs=147.0

Q ss_pred             CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291         70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS  149 (404)
Q Consensus        70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  149 (404)
                      +|+.|++++|+++++|...+   ++|++|++++|.++.+|    ..+++|++|++++|.++.++.  +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence            78888888888888877553   67888888888888877    246788888888888888776  443  88888888


Q ss_pred             CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291        150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN  229 (404)
Q Consensus       150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  229 (404)
                      +|.+..++.    .+++|+.|++++|.++.++.    .+++|++|++++|.++.++.  +.  ++|+.|++++|.++.++
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence            888887664    56788888988888888775    46788899999988888654  44  88999999999888776


Q ss_pred             hhhhcCCCCC-------cEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccC
Q psy12291        230 GDEFSQLTSL-------KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAG  283 (404)
Q Consensus       230 ~~~~~~l~~L-------~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  283 (404)
                      .  +..  +|       +.|++++|.++.+|.. +..+++|+.|+|++|.++...+..+..
T Consensus       197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          197 A--VPV--RNHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C--CC----------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             h--HHH--hhhcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            5  443  66       9999999999999875 445999999999999998876655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=1.8e-20  Score=166.58  Aligned_cols=190  Identities=23%  Similarity=0.295  Sum_probs=143.3

Q ss_pred             eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291         47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY  126 (404)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  126 (404)
                      +..+.+..+.+..+.  .+..+++|+.|++++|.+..++.  +..+++|++|++++|.++.+++  +..+++|++|++++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            334455666665542  34567899999999999998865  6789999999999999999887  88999999999999


Q ss_pred             CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCC
Q psy12291        127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP  206 (404)
Q Consensus       127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  206 (404)
                      |.++.++.  +..+++|+.|++++|.+..+  ..+..+++|+.|++++|.++.+  ..+..+++|+.|++++|.++.+.+
T Consensus       100 n~l~~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          100 NKVKDLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             SCCCCGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCCChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            99998765  78899999999999999886  3577889999999999988876  345667777777777777665543


Q ss_pred             CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCccc
Q psy12291        207 GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI  252 (404)
Q Consensus       207 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  252 (404)
                        +..+++|+.|++++|.+..++  .+..+++|+.|++++|.+...
T Consensus       174 --l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          174 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred             --hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCC
Confidence              555666666666666555543  245555555555555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.84  E-value=6.7e-20  Score=152.43  Aligned_cols=137  Identities=28%  Similarity=0.483  Sum_probs=125.5

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST   92 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   92 (404)
                      .||..|.|..  ..++|.+++++.+|..  ++.++++|++++|.++.++ ..|.++++|+.|++++|.++.++...|..+
T Consensus         3 ~CP~~C~C~~--~~l~~~~~~l~~ip~~--~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l   77 (193)
T 2wfh_A            3 RCPTECTCLD--TVVRCSNKGLKVLPKG--IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNM   77 (193)
T ss_dssp             -CCTTCEEET--TEEECTTSCCSSCCSC--CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCCCEeCC--CEEEcCCCCCCcCCCC--CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence            5899999974  6899999999999976  6789999999999999886 679999999999999999999999999999


Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT  154 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~  154 (404)
                      ++|++|++++|.++.+++..|.++++|++|++++|.++.++...|..+++|+.|++++|++.
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99999999999999999888999999999999999999999888888999999999998775

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.83  E-value=1.5e-19  Score=148.51  Aligned_cols=138  Identities=28%  Similarity=0.527  Sum_probs=125.3

Q ss_pred             CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCC
Q psy12291         14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI   93 (404)
Q Consensus        14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~   93 (404)
                      ||..|.|.  .+.++|.+++++.+|..  .+.++++|++++|.++.+.+..|.++++|++|++++|+++.++...|..++
T Consensus         1 Cp~~C~C~--~~~l~~~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~   76 (177)
T 2o6r_A            1 CPSRCSCS--GTEIRCNSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT   76 (177)
T ss_dssp             CCTTCEEE--TTEEECCSSCCSSCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred             CcCCCEeC--CCEEEecCCCCccCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC
Confidence            78999995  68899999999999965  667999999999999999888889999999999999999999988889999


Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS  155 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~  155 (404)
                      +|++|++++|.++.+++..|..+++|++|++++|.++.++...|..+++|+.|++++|++..
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            99999999999999998888899999999999999999988888888999999999988754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=4.4e-22  Score=195.18  Aligned_cols=126  Identities=17%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             CCceEEecCCCCCccCCCC---CCCCCeeEEEcCCCC-CcccCh-hhcCCCCCCCEEEccCCcCcccCc----ccccCCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQ---IIPVDIRVIDLGINQ-LSTLSK-DAFTGLYKLTELKLRKNHLSELPG----KLFISTI   93 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~---~~~~~l~~L~l~~~~-i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~   93 (404)
                      ..+.++..++.+.......   ..+.++++|+++++. +..... ....++++|++|++++|.+.+...    ..+..++
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~  192 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT  192 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence            4666777666544221110   022348888887775 211111 112366778888888777654321    1234567


Q ss_pred             CCCEEeCCCCCCcccCc----cccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291         94 NLSTMDLSQNLIKTLPS----TFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS  149 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  149 (404)
                      +|++|++++|.++.+..    ..+.++++|+.|++++|.+..++ ..+..+++|+.|+++
T Consensus       193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGG  251 (592)
T ss_dssp             CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEEC
T ss_pred             CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhccc
Confidence            77777777777653322    22445677777777776655433 122334444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.82  E-value=1.8e-19  Score=149.84  Aligned_cols=138  Identities=29%  Similarity=0.512  Sum_probs=122.5

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChh-hcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKD-AFTGLYKLTELKLRKNHLSELPGKLFIS   91 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~   91 (404)
                      .||..|.|..  +.++|.+++++.+|..  ++.++++|++++|.+..+.+. .|.++++|++|++++|+++++.+..|..
T Consensus         1 ~CP~~C~C~~--~~l~~s~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   76 (192)
T 1w8a_A            1 DCPAMCHCEG--TTVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             CCCTTSEEET--TEEECTTSCCSSCCSC--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CcCCCCEECC--CEEEcCCCCcCcCccC--CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC
Confidence            4899999975  7899999999999986  666999999999999988764 4889999999999999999998888899


Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT  154 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~  154 (404)
                      +++|++|++++|.++.+++..|.++++|++|++++|.++.+.+..|..+++|+.|++++|++.
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            999999999999999988888888999999999999998887777888888999999888775

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=8.7e-20  Score=177.30  Aligned_cols=199  Identities=23%  Similarity=0.289  Sum_probs=154.4

Q ss_pred             CCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291         70 KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS  149 (404)
Q Consensus        70 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  149 (404)
                      .+..+.+..+.+..+..  +..+++|+.|++++|.+..++.  +..+++|+.|+|++|.+..+++  +..+++|+.|+++
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            44555666666666544  3567889999999999988874  7789999999999999888776  6788899999999


Q ss_pred             CCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291        150 QNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN  229 (404)
Q Consensus       150 ~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  229 (404)
                      +|.+..++  .+..+++|+.|++++|.+..++  .+..+++|+.|++++|.+..+  ..+..+++|+.|+|++|.+..++
T Consensus        96 ~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A           96 ENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             SSCCCCCT--TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCCCCCh--hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence            99888764  5778888899999888888764  367788888888888888776  45777888888888888887776


Q ss_pred             hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCC
Q psy12291        230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGL  284 (404)
Q Consensus       230 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  284 (404)
                      +  +..+++|+.|++++|.+..++  .+..+++|+.|+|++|.+...+...+..+
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccccE
Confidence            4  777888888888888887764  36778888888888887776655444333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=1e-19  Score=176.84  Aligned_cols=195  Identities=24%  Similarity=0.298  Sum_probs=169.0

Q ss_pred             eeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccC
Q psy12291         47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY  126 (404)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~  126 (404)
                      +..+.+..+.+..+.  .+..+++|+.|++++|.+..++.  |..+++|+.|+|++|.+..+++  +..+++|+.|+|++
T Consensus        23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            455666777766553  24677899999999999999874  6889999999999999999887  88999999999999


Q ss_pred             CCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCC
Q psy12291        127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP  206 (404)
Q Consensus       127 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  206 (404)
                      |.+..++.  +..+++|+.|++++|.+..+.  .+..+++|+.|++++|.++.+  ..+..+++|+.|++++|.+..+.+
T Consensus        97 N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           97 NKIKDLSS--LKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             SCCCCCTT--STTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCCChh--hccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            99998774  788999999999999998864  588899999999999999987  457899999999999999998766


Q ss_pred             CccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccc
Q psy12291        207 GLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSF  257 (404)
Q Consensus       207 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  257 (404)
                        +..+++|+.|+|++|.+..++  .+..+++|+.|++++|.+...+...+
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~  217 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQ  217 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCC
T ss_pred             --hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCccccc
Confidence              889999999999999998874  68899999999999999887765433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.82  E-value=2e-18  Score=160.22  Aligned_cols=276  Identities=21%  Similarity=0.334  Sum_probs=174.2

Q ss_pred             CcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCC---------
Q psy12291         57 LSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN---------  127 (404)
Q Consensus        57 i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n---------  127 (404)
                      ++.|...+|.++.+|+.+.+.. .++.|+..+|.++++|+.+++..+ ++.++..+|.++.+|+.+.+..+         
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF  136 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF  136 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence            4555555666666666666653 355666666666666666666433 55555555555555555444322         


Q ss_pred             ------------CCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEe
Q psy12291        128 ------------AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS  195 (404)
Q Consensus       128 ------------~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  195 (404)
                                  ....+...+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ +..+...+|..+..|+.+.
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~  214 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME  214 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence                        122344455666667777776543 34555666666677777766554 5555566666666666555


Q ss_pred             cCCCcC---------------------cccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCc
Q psy12291        196 LRNNRL---------------------SFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA  254 (404)
Q Consensus       196 l~~~~~---------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  254 (404)
                      +..+..                     +.+....+..+..++.+.+..+. ..+...+|..+..++.+.....   .++.
T Consensus       215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~---~i~~  290 (394)
T 4fs7_A          215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSV---IVPE  290 (394)
T ss_dssp             CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSS---EECT
T ss_pred             cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCce---eecc
Confidence            543321                     12222334444455555544432 2233344455555555544433   2444


Q ss_pred             ccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCC
Q psy12291        255 GSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPN  334 (404)
Q Consensus       255 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  334 (404)
                      ..|..+.+|+.+.+.++ ++.++..+|.++.+|+.+++.+ .++.++..+|.++.+|+.+++..+ ++.++..+|..+.+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            56777888999988654 8888888999999999999974 488899999999999999999876 88999999999999


Q ss_pred             CcEEEccCC
Q psy12291        335 LITLKLAKN  343 (404)
Q Consensus       335 L~~l~l~~N  343 (404)
                      |+.+++..+
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            999998653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=6.1e-22  Score=194.18  Aligned_cols=298  Identities=15%  Similarity=0.106  Sum_probs=154.8

Q ss_pred             CCeeEEEcCCCCCcccCh----hhcCCCCCCCEEEccCCcCcccCc----ccccCCCCCCEEeCCCCCCcccCccccCCC
Q psy12291         45 VDIRVIDLGINQLSTLSK----DAFTGLYKLTELKLRKNHLSELPG----KLFISTINLSTMDLSQNLIKTLPSTFFKGA  116 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  116 (404)
                      +++++|++++|.+.....    ..+.++++|++|++++|.+..+..    ..+..+++|++|++++|.+..++. .+..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~-~~~~~  242 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG-FFKAA  242 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH-HHHHC
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH-HHhhh
Confidence            478899999987755432    234567888999998888863332    234567889999999888877663 46677


Q ss_pred             CCCcEEEccCCCCC-c--CCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCC-CccCCCCCCC
Q psy12291        117 IRLTVVQLSYNAIE-S--LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP-GIFDDLKYLD  192 (404)
Q Consensus       117 ~~L~~L~l~~n~l~-~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~  192 (404)
                      ++|+.|+++..... .  .....+..+++|+.|+++++....+. ..+..+++|++|++++|.++.... ..+..+++|+
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            88888887643211 0  01122345556666666654332222 334455666666666665432211 1134455555


Q ss_pred             eEecCCCcCcc-cCCCccCC------------------------------------CCCCCEEECCCCcCCCCChhhhcC
Q psy12291        193 FLSLRNNRLSF-IRPGLFNY------------------------------------FKHLTFLELSENWISSLNGDEFSQ  235 (404)
Q Consensus       193 ~L~l~~~~~~~-~~~~~~~~------------------------------------l~~L~~L~l~~~~~~~~~~~~~~~  235 (404)
                      .|++. +.+.. ..+.....                                    +++|++|+++.+.++......+..
T Consensus       322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            55554 22111 11111223                                    444555544444443322222322


Q ss_pred             -CCCCcEEECC----CCCCcccCc-----ccccCCCCCcEEECcCCC--ccccccccc-cCCCCCCeeecccccccccCc
Q psy12291        236 -LTSLKELHLG----QNYIETIPA-----GSFANLQSLEKLFLYSNN--IQELHAGTF-AGLTNLTALFLNNNLLRYLDT  302 (404)
Q Consensus       236 -l~~L~~L~l~----~~~l~~~~~-----~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~  302 (404)
                       +++|++|+++    .+.++..+.     ..+..+++|+.|++++|.  +++.....+ ..+++|++|++++|+++....
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence             4555555553    333433221     113335556666654322  332222222 235666666666666554322


Q ss_pred             -cccCCCCCCcEEeCCCCCCcccC-cccccCCCCCcEEEccCCcc
Q psy12291        303 -KAFEPMLHLKKLQLDSNKLQYLA-TDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       303 -~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~l~~Np~  345 (404)
                       ..+..+++|++|++++|.++... ......+++|+.|++++|++
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence             23355666666666666654321 12234466666666666664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=5.7e-22  Score=194.47  Aligned_cols=298  Identities=14%  Similarity=0.077  Sum_probs=169.4

Q ss_pred             CCeeEEEcCCCCCcccChhhcC-CCCCCCEEEccCC-cCccc-CcccccCCCCCCEEeCCCCCCcccCcc----ccCCCC
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFT-GLYKLTELKLRKN-HLSEL-PGKLFISTINLSTMDLSQNLIKTLPST----FFKGAI  117 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~~  117 (404)
                      .++++|+++++.++......+. .+++|++|++++| .+... ....+..+++|++|++++|.++.....    ....++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            4677888887777655444454 5677777777777 44431 112224577777777777765543322    123556


Q ss_pred             CCcEEEccCCCCCcCCCcc----CCCCCCCCEEECCCCc--------------cc-------------------------
Q psy12291        118 RLTVVQLSYNAIESLPANV----FHDLISLEELDLSQNV--------------LT-------------------------  154 (404)
Q Consensus       118 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~~~--------------l~-------------------------  154 (404)
                      +|++|+++++. ..+....    ...+++|+.|++++|.              +.                         
T Consensus       185 ~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~  263 (594)
T 2p1m_B          185 SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG  263 (594)
T ss_dssp             CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred             cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence            77777777665 2222111    1224566666666541              00                         


Q ss_pred             -----------ccccccc----cCCccCcEEeccCCCCCCCC-CCccCCCCCCCeEecCCCcCccc-CCCccCC------
Q psy12291        155 -----------SIQYGTF----SGMYSLKRLKLQSNRINQLP-PGIFDDLKYLDFLSLRNNRLSFI-RPGLFNY------  211 (404)
Q Consensus       155 -----------~~~~~~l----~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~------  211 (404)
                                 ......+    ..+++|++|++++|.++... ...+..+++|+.|++.++ +... .......      
T Consensus       264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~  342 (594)
T 2p1m_B          264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE  342 (594)
T ss_dssp             CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred             CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence                       0011111    13567888888887755321 112345666777776655 2210 0011112      


Q ss_pred             ----------------------------CCCCCEEECCCCcCCCCChhhhc-CCCCCcEEECC--C----CCCcccCc--
Q psy12291        212 ----------------------------FKHLTFLELSENWISSLNGDEFS-QLTSLKELHLG--Q----NYIETIPA--  254 (404)
Q Consensus       212 ----------------------------l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~----~~l~~~~~--  254 (404)
                                                  +++|+.|.+..+.++......+. .+++|+.|+++  +    +.++..+.  
T Consensus       343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~  422 (594)
T 2p1m_B          343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI  422 (594)
T ss_dssp             EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred             EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence                                        34455554444444333222232 46677777777  3    34443221  


Q ss_pred             ---ccccCCCCCcEEECcCCCccccccccccC-CCCCCeeecccccccccCcccc-CCCCCCcEEeCCCCCCcccCcc-c
Q psy12291        255 ---GSFANLQSLEKLFLYSNNIQELHAGTFAG-LTNLTALFLNNNLLRYLDTKAF-EPMLHLKKLQLDSNKLQYLATD-S  328 (404)
Q Consensus       255 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~  328 (404)
                         ..+..+++|+.|++++ .+++.....+.. +++|++|++++|.++......+ ..+++|+.|+|++|.++..... .
T Consensus       423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~  501 (594)
T 2p1m_B          423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN  501 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred             HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence               1244567888888866 555544434443 7889999999998876544444 5688999999999998654332 3


Q ss_pred             ccCCCCCcEEEccCCcc
Q psy12291        329 LSLLPNLITLKLAKNPW  345 (404)
Q Consensus       329 ~~~l~~L~~l~l~~Np~  345 (404)
                      ...+++|+.|++++|+.
T Consensus       502 ~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          502 ASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             GGGGGGSSEEEEESSCC
T ss_pred             HHhCCCCCEEeeeCCCC
Confidence            45688999999999887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=5.9e-22  Score=194.35  Aligned_cols=298  Identities=16%  Similarity=0.141  Sum_probs=180.2

Q ss_pred             CCeeEEEcCCCC-CcccC--------------hhhcCCCCCCCEEEccCCcCcccCccccc-CCCCCCEEeCCCC-CCcc
Q psy12291         45 VDIRVIDLGINQ-LSTLS--------------KDAFTGLYKLTELKLRKNHLSELPGKLFI-STINLSTMDLSQN-LIKT  107 (404)
Q Consensus        45 ~~l~~L~l~~~~-i~~~~--------------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~n-~l~~  107 (404)
                      +.+++|+++++. +..+.              ...+..+++|++|+++++.+.......+. .+++|++|++++| .++.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            468999998875 22221              11234678999999999988855444443 6889999999999 5554


Q ss_pred             c-CccccCCCCCCcEEEccCCCCCcCCCc----cCCCCCCCCEEECCCCccccccccc----ccCCccCcEEeccCCC--
Q psy12291        108 L-PSTFFKGAIRLTVVQLSYNAIESLPAN----VFHDLISLEELDLSQNVLTSIQYGT----FSGMYSLKRLKLQSNR--  176 (404)
Q Consensus       108 ~-~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~----l~~l~~L~~L~l~~~~--  176 (404)
                      . ....+.++++|++|++++|.++.....    ....+++|+.|+++++. ..+....    +..+++|++|++++|.  
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~  224 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPL  224 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence            2 223345789999999999987654432    23367799999999986 2222121    2345788888888761  


Q ss_pred             ------------CCCC------------------------------------CCCcc----CCCCCCCeEecCCCcCccc
Q psy12291        177 ------------INQL------------------------------------PPGIF----DDLKYLDFLSLRNNRLSFI  204 (404)
Q Consensus       177 ------------l~~~------------------------------------~~~~~----~~l~~L~~L~l~~~~~~~~  204 (404)
                                  +..+                                    ....+    ..+++|++|++++|.++..
T Consensus       225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~  304 (594)
T 2p1m_B          225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY  304 (594)
T ss_dssp             HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred             HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence                        1111                                    11111    1458999999999986642


Q ss_pred             C-CCccCCCCCCCEEECCCCcCCCCChhh-hcCCCCCcEEECCC---------CCCcccCc-------------------
Q psy12291        205 R-PGLFNYFKHLTFLELSENWISSLNGDE-FSQLTSLKELHLGQ---------NYIETIPA-------------------  254 (404)
Q Consensus       205 ~-~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~---------~~l~~~~~-------------------  254 (404)
                      . ...+..+++|+.|+++++ +....... ...+++|++|++.+         +.++....                   
T Consensus       305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~  383 (594)
T 2p1m_B          305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ  383 (594)
T ss_dssp             HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC
T ss_pred             HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC
Confidence            2 223567899999999987 32111111 22467777777733         22221110                   


Q ss_pred             ------ccc-cCCCCCcEEECc--C----CCcccccc-----ccccCCCCCCeeecccccccccCccccCC-CCCCcEEe
Q psy12291        255 ------GSF-ANLQSLEKLFLY--S----NNIQELHA-----GTFAGLTNLTALFLNNNLLRYLDTKAFEP-MLHLKKLQ  315 (404)
Q Consensus       255 ------~~~-~~l~~L~~L~L~--~----n~l~~~~~-----~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~  315 (404)
                            ..+ ..+++|+.|+++  +    +.++..+.     ..+..+++|++|++++ .++......+.. +++|+.|+
T Consensus       384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~  462 (594)
T 2p1m_B          384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLS  462 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEE
T ss_pred             cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEee
Confidence                  011 124555555555  2    33332211     1133455666666654 343332222322 67888888


Q ss_pred             CCCCCCcccCcccc-cCCCCCcEEEccCCcc
Q psy12291        316 LDSNKLQYLATDSL-SLLPNLITLKLAKNPW  345 (404)
Q Consensus       316 l~~n~l~~~~~~~~-~~l~~L~~l~l~~Np~  345 (404)
                      +++|.+++.....+ ..+++|+.|++++|++
T Consensus       463 L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          463 VAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             EESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             ccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            88888765444333 5689999999999986

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.80  E-value=1e-19  Score=159.19  Aligned_cols=148  Identities=24%  Similarity=0.357  Sum_probs=68.6

Q ss_pred             CCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEE
Q psy12291        187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKL  266 (404)
Q Consensus       187 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  266 (404)
                      .+++|+.|++++|.++.++  .+..+++|++|++++|.+..+++  +..+++|++|++++|.+..++.  +.. ++|+.|
T Consensus        39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L  111 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRL  111 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEE
T ss_pred             hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEE
Confidence            3344444444444443332  23344444444444444444432  4444444555555544444443  111 445555


Q ss_pred             ECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccc
Q psy12291        267 FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       267 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~  346 (404)
                      ++++|.++.++  .+..+++|++|++++|+++.++  .+..+++|+.|++++|+++++  ..+..+++|+.|++++|++.
T Consensus       112 ~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          112 FLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             EccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            55555554442  2444555555555555555442  344445555555555555544  23444555555555555544


Q ss_pred             c
Q psy12291        347 C  347 (404)
Q Consensus       347 C  347 (404)
                      +
T Consensus       186 ~  186 (263)
T 1xeu_A          186 N  186 (263)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.78  E-value=1.4e-18  Score=158.62  Aligned_cols=137  Identities=27%  Similarity=0.493  Sum_probs=121.4

Q ss_pred             cEEECCCC-CCcccCcccccCCCCCcEEECcC-CCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCC
Q psy12291        240 KELHLGQN-YIETIPAGSFANLQSLEKLFLYS-NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD  317 (404)
Q Consensus       240 ~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  317 (404)
                      ..++++++ ++..+|.  +..+++|+.|+|++ |.|+.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 8888887  78889999999996 99999998899999999999999999999999999999999999999


Q ss_pred             CCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCC
Q psy12291        318 SNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLG  379 (404)
Q Consensus       318 ~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~  379 (404)
                      +|+|+.+++..+..++ |+.|+|.+|+|.|+|.+.|+..|++.....+....++|..|..++
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~~l~  149 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA  149 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSS
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCChHHh
Confidence            9999999988777766 999999999999999999999999887665545689999988443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=8.1e-19  Score=153.40  Aligned_cols=172  Identities=23%  Similarity=0.267  Sum_probs=121.9

Q ss_pred             CCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEe
Q psy12291        116 AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS  195 (404)
Q Consensus       116 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  195 (404)
                      +.++..++++++.++.++.  +..+++|+.|++++|.+..++  .+..+++|++|++++|.++.+++  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCcccccc--hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            4456667777777777663  456778888888888877765  56777888888888888877765  67778888888


Q ss_pred             cCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccc
Q psy12291        196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE  275 (404)
Q Consensus       196 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~  275 (404)
                      +++|+++.++..  .. ++|+.|++++|.+..++  .+..+++|+.|++++|.++.++  .+..+++|+.|++++|.+++
T Consensus        92 L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence            888877765432  22 67777777777777653  4667777777777777777664  36667777777777777776


Q ss_pred             cccccccCCCCCCeeecccccccccCc
Q psy12291        276 LHAGTFAGLTNLTALFLNNNLLRYLDT  302 (404)
Q Consensus       276 ~~~~~~~~~~~L~~L~l~~n~i~~~~~  302 (404)
                      +  ..+..+++|++|++++|.++..+.
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             h--HHhccCCCCCEEeCCCCcccCCcc
Confidence            6  446667777777777777665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.78  E-value=7.5e-17  Score=149.65  Aligned_cols=287  Identities=15%  Similarity=0.295  Sum_probs=179.8

Q ss_pred             eeEEEcCCCCCcccChhhcCCCCCCCEEEccCC---cCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEE
Q psy12291         47 IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN---HLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQ  123 (404)
Q Consensus        47 l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  123 (404)
                      |+.+.+.. .++.+...+|.++.+|+.+.+..+   .++.++..+|..+.+|+.+.+..+ ++.++..+|.++.+|+.+.
T Consensus        66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            55555543 255555555555555555555543   245555555555555555544332 4455555555555555555


Q ss_pred             ccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcc
Q psy12291        124 LSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSF  203 (404)
Q Consensus       124 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~  203 (404)
                      +..+ +..+....|..+..|+.+.+..+ +..+...+|.. .+|+.+.+..+ +..+...+|..+.++............
T Consensus       144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~  219 (394)
T 4gt6_A          144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPA  219 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred             ccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceeccccccccc
Confidence            5432 34455555555555555555432 44444445543 34555555443 334444455555555555544332221


Q ss_pred             cCCCc-------------cCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcC
Q psy12291        204 IRPGL-------------FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYS  270 (404)
Q Consensus       204 ~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~  270 (404)
                      .....             +.....+..+.+.. .+..+...+|.++.+|+.+.+..+ +..+....|..+++|+.+.+. 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-  296 (394)
T 4gt6_A          220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-  296 (394)
T ss_dssp             SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-
T ss_pred             ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-
Confidence            11110             11122333444432 233445567888899999998764 456777788999999999995 


Q ss_pred             CCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCc
Q psy12291        271 NNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNP  344 (404)
Q Consensus       271 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np  344 (404)
                      +.++.++..+|.++.+|+.+.+.. .++.++..+|.++.+|+.+.|..+ ++.++..+|..+.+|+.+++.++.
T Consensus       297 ~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          297 SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            578889899999999999999975 488899999999999999999654 889999999999999999998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=1.7e-18  Score=144.67  Aligned_cols=149  Identities=15%  Similarity=0.198  Sum_probs=93.8

Q ss_pred             CCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEEC
Q psy12291        189 KYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL  268 (404)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L  268 (404)
                      ++|+.|++++|.++.++  .+..+++|++|++++|.+...+  .+..+++|++|++++|.+.......+..+++|+.|++
T Consensus        44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            34444444444444332  2444455555555555443332  4556667777777777766543345667777777777


Q ss_pred             cCCCccccccccccCCCCCCeeeccccc-ccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        269 YSNNIQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       269 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      ++|.+++..+..+..+++|++|++++|+ ++.++  .+..+++|+.|++++|+++.++  .+..+++|+.|++++|++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            7777776555666777777777777776 66664  4666777778888777777765  466777888888887775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=2.9e-18  Score=143.28  Aligned_cols=108  Identities=16%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             CCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCC-CcccCcccccCCCCCc
Q psy12291        186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY-IETIPAGSFANLQSLE  264 (404)
Q Consensus       186 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~  264 (404)
                      ..+++|++|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|. +..++  .+..+++|+
T Consensus        85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~  162 (197)
T 4ezg_A           85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELK  162 (197)
T ss_dssp             TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCC
T ss_pred             hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCC
Confidence            344444444444444443333344444555555555555544334445555555555555554 44443  244455555


Q ss_pred             EEECcCCCccccccccccCCCCCCeeecccccc
Q psy12291        265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLL  297 (404)
Q Consensus       265 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i  297 (404)
                      .|++++|.+++++  .+..+++|++|++++|+|
T Consensus       163 ~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          163 SLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            5555555555443  344455555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.76  E-value=1e-16  Score=148.72  Aligned_cols=293  Identities=19%  Similarity=0.254  Sum_probs=226.8

Q ss_pred             CCCccCCCCCCC-CCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC--------
Q psy12291         33 DMEELPFDQIIP-VDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN--------  103 (404)
Q Consensus        33 ~l~~ip~~~~~~-~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n--------  103 (404)
                      .+++|+...+.. .+|+.+.+.. .++.+...+|.++.+|+.+++.++ ++.++..+|.++..|+.+.+..+        
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a  135 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEA  135 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeeccee
Confidence            356676665543 6799999974 588888889999999999999754 77888888888888877666432        


Q ss_pred             -------------CCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEE
Q psy12291        104 -------------LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRL  170 (404)
Q Consensus       104 -------------~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  170 (404)
                                   .+..+...+|.++.+|+.+.+..+ +..+....|.++.+|+.+.+..+ +..+...+|.++..|+.+
T Consensus       136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM  213 (394)
T ss_dssp             TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred             eecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence                         122345566888899999999765 56788888888889999988765 666666677777666666


Q ss_pred             eccCC---------------------CCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291        171 KLQSN---------------------RINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN  229 (404)
Q Consensus       171 ~l~~~---------------------~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  229 (404)
                      .+..+                     .++.+....|..+..++.+.+..+. ..+....|..+..++.+......   ++
T Consensus       214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~---i~  289 (394)
T 4fs7_A          214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI---VP  289 (394)
T ss_dssp             CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE---EC
T ss_pred             ecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCcee---ec
Confidence            55432                     2334556667788888888887653 44667788899999999887654   44


Q ss_pred             hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCC
Q psy12291        230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPML  309 (404)
Q Consensus       230 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~  309 (404)
                      ..+|..+.+|+.+.+..+ +..++...|..+.+|+.+++.. .++.++..+|.++.+|+.+.+..+ ++.++..+|.+++
T Consensus       290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            567888999999999765 8888888999999999999975 488999999999999999999876 8999999999999


Q ss_pred             CCcEEeCCCCCCcccCcccccCCCCCcEE
Q psy12291        310 HLKKLQLDSNKLQYLATDSLSLLPNLITL  338 (404)
Q Consensus       310 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  338 (404)
                      +|+.+++..+ ++.+ ...+..+++|+.+
T Consensus       367 ~L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          367 NLKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             CCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            9999999764 4444 3567788888765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.73  E-value=2.8e-17  Score=133.64  Aligned_cols=115  Identities=30%  Similarity=0.509  Sum_probs=98.3

Q ss_pred             CCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST   92 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   92 (404)
                      .||..|.|.  .+.++|.+++++.+|..  ++..+++|++++|.|+.+.+..|.++++|++|++++|+++.+++..|..+
T Consensus         2 ~CP~~C~C~--~~~l~~s~n~l~~ip~~--~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l   77 (170)
T 3g39_A            2 ACPSQCSCS--GTTVDCSGKSLASVPTG--IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL   77 (170)
T ss_dssp             CCC-CCEEE--TTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             cCcCcCCcC--CCEEEeCCCCcCccCcc--CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC
Confidence            589999996  57899999999999976  56889999999999999888888889999999999999988888888888


Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCc
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES  131 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  131 (404)
                      ++|++|++++|.++.+++..|..+++|++|++++|.+..
T Consensus        78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            888888888888888888778888888888888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.72  E-value=5.9e-17  Score=132.13  Aligned_cols=117  Identities=26%  Similarity=0.471  Sum_probs=100.6

Q ss_pred             CCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291         12 RCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS   91 (404)
Q Consensus        12 ~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~   91 (404)
                      ..||..|.|.  .+.++|.++++..+|..  ++.++++|++++|.|..+.+..|.++++|++|+|++|+++.++...|..
T Consensus         4 ~~CP~~C~C~--~~~l~~~~n~l~~iP~~--~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A            4 AGCPSQCSCD--QTLVNCQNIRLASVPAG--IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             CSSCTTSEEC--SSEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCCCEEC--CcEEEeCCCCCCccCCC--cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence            3789999996  47899999999999986  5688999999999999888888888999999999999999888888888


Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcC
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL  132 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  132 (404)
                      +++|++|++++|.++.+++..|..+++|++|++++|.+...
T Consensus        80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            88888888888888888887788888888888888877643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.72  E-value=2.4e-15  Score=139.46  Aligned_cols=308  Identities=16%  Similarity=0.284  Sum_probs=235.1

Q ss_pred             CCceEEecCCCCCccCCCCCC-CCCeeEEEcCCC---CCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q psy12291         23 EIHTLSCWKQDMEELPFDQII-PVDIRVIDLGIN---QLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTM   98 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~-~~~l~~L~l~~~---~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L   98 (404)
                      .++.|..-. +++.|....+. ..+|+.+.+..+   .++.+...+|.++.+|+.+.+..+ ++.++..+|..+.+|+.+
T Consensus        65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            356677653 57888777654 368999999865   488888999999999999888654 788999999999999999


Q ss_pred             eCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCC
Q psy12291         99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN  178 (404)
Q Consensus        99 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  178 (404)
                      .+.. .+..++..+|..+.+|+.+.+..+ ++.+...+|.+ ..|+.+.+..+ +..+...+|.++.+++..........
T Consensus       143 ~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          143 TIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             ECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred             cccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccccc
Confidence            9964 467888888999999999999865 77888888865 68999999754 55667788888999998887766544


Q ss_pred             CCCCCccC-------------CCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECC
Q psy12291        179 QLPPGIFD-------------DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG  245 (404)
Q Consensus       179 ~~~~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  245 (404)
                      .+....+.             ....+..+.+. +.++.+....|..+..|+.+.+..+ +..+...+|.++++|+.+.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~  296 (394)
T 4gt6_A          219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS  296 (394)
T ss_dssp             BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccc-cceecCcccccccccccccCC
Confidence            33322221             12233444443 2345566678899999999999765 345667789999999999996


Q ss_pred             CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291        246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  325 (404)
                       +.+..++...|..+.+|+.+.+.. .++.+...+|.+|.+|+.+.+.. .++.++..+|.++.+|+.+++.++...   
T Consensus       297 -~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~---  370 (394)
T 4gt6_A          297 -SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ---  370 (394)
T ss_dssp             -TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH---
T ss_pred             -CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee---
Confidence             568889988999999999999976 48889999999999999999965 489999999999999999999987533   


Q ss_pred             cccccCCCCCcEEEccCCc
Q psy12291        326 TDSLSLLPNLITLKLAKNP  344 (404)
Q Consensus       326 ~~~~~~l~~L~~l~l~~Np  344 (404)
                      .+.+..+.+|+.+.+..|.
T Consensus       371 ~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          371 WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             HHTCBCCCCC---------
T ss_pred             hhhhhccCCCCEEEeCCCC
Confidence            1346677888888876553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.70  E-value=3.3e-17  Score=125.95  Aligned_cols=108  Identities=29%  Similarity=0.446  Sum_probs=88.0

Q ss_pred             Ceeeccccccc--ccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcc
Q psy12291        288 TALFLNNNLLR--YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKV  365 (404)
Q Consensus       288 ~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~  365 (404)
                      ..++.++++++  .++...   .++|+.|+|++|+|+.++.+.+..+++|+.|+|.+|||.|||.+.||..|+.......
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~   87 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA   87 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred             CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence            36677777777  665432   2479999999999999999999999999999999999999999999999999876555


Q ss_pred             cCCCCeeCCCCCCCCCcccCCCCcCC---CCccccc
Q psy12291        366 WDSKPTCRGPGNLGGKSVEDMSFDDL---CEGQWAS  398 (404)
Q Consensus       366 ~~~~~~C~~p~~l~~~~l~~~~~~~~---C~~~~~~  398 (404)
                      .....+|++|+.++|+.+.++..+++   |......
T Consensus        88 ~~~~~~C~~P~~l~g~~l~~l~~~~l~c~C~~~~~~  123 (130)
T 3rfe_A           88 PYRDLRCVAPPALRGRLLPYLAEDELRAACAPGPLS  123 (130)
T ss_dssp             GGTTCBCCBSTTTTTCBGGGCCHHHHHHTTCC----
T ss_pred             cccCcEeCcChHHcCCCcccCCHHHhhCcCCCCccc
Confidence            44579999999999999999998776   5544433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.69  E-value=6.1e-15  Score=136.15  Aligned_cols=282  Identities=17%  Similarity=0.297  Sum_probs=154.4

Q ss_pred             CeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEcc
Q psy12291         46 DIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS  125 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~  125 (404)
                      +++.+.+.. .++.|...+|.++.+|+.+.|..+ ++.|+..+|.++ +|+.+.+.. .++.++..+|... +|+.+.+.
T Consensus        47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~lp  121 (379)
T 4h09_A           47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDFEFP  121 (379)
T ss_dssp             GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEEECC
T ss_pred             CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-CcccccCC
Confidence            567777754 477777788888888888888654 777888888776 577776654 3667777777654 78888876


Q ss_pred             CCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC------------CCccCCCCCCCe
Q psy12291        126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP------------PGIFDDLKYLDF  193 (404)
Q Consensus       126 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~------------~~~~~~l~~L~~  193 (404)
                      .+ ++.+...+|.+. +++.+.+.. .+..+...+|..+.+++.+.+.........            ...+.....+..
T Consensus       122 ~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (379)
T 4h09_A          122 GA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE  198 (379)
T ss_dssp             TT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred             Cc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence            54 455666666553 566665543 345555566666666766665543221100            011122223333


Q ss_pred             EecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCc
Q psy12291        194 LSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI  273 (404)
Q Consensus       194 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l  273 (404)
                      +.+... ...+....+....+++.+.+..+ +..+...++.++..|+.+.+..+ +..+....|..+.+|+.+.+.. .+
T Consensus       199 ~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i  274 (379)
T 4h09_A          199 FTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KV  274 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CC
T ss_pred             cccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cc
Confidence            333221 11222333444455555555432 33333444555555555555443 4445444555555555555532 34


Q ss_pred             cccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEc
Q psy12291        274 QELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL  340 (404)
Q Consensus       274 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l  340 (404)
                      +.++..+|.++++|+.+.+.++.++.++..+|..+.+|+.+.|..+ ++.++..+|..+.+|+.+.+
T Consensus       275 ~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          275 KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            4455555555555555555555555555555555555555555432 55555555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=2.9e-19  Score=172.55  Aligned_cols=122  Identities=25%  Similarity=0.325  Sum_probs=101.5

Q ss_pred             CCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecc
Q psy12291        214 HLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN  293 (404)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  293 (404)
                      .|+.|++++|.++.++.  +..+++|+.|++++|.+..+|. .+..+++|+.|+|++|.++.++  .++.+++|++|+|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence            48889999998888763  8888899999999999888876 6888899999999999998875  68888999999999


Q ss_pred             cccccccC-ccccCCCCCCcEEeCCCCCCcccCccc---ccCCCCCcEEEc
Q psy12291        294 NNLLRYLD-TKAFEPMLHLKKLQLDSNKLQYLATDS---LSLLPNLITLKL  340 (404)
Q Consensus       294 ~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~l~l  340 (404)
                      +|+++.+. +..+..+++|+.|+|++|+++++++..   +..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99998886 777888899999999999988876532   334788888864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.6e-20  Score=181.31  Aligned_cols=122  Identities=23%  Similarity=0.293  Sum_probs=89.1

Q ss_pred             CCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECc
Q psy12291        190 YLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLY  269 (404)
Q Consensus       190 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~  269 (404)
                      .|+.|++++|.++.++ . +..+++|+.|++++|.+..++ ..+..+++|+.|++++|.++.+|  .+..+++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALENVD--GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSCC-C-GGGGTTCCEEECCSSCCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCCc-C-ccccccCcEeecCcccccccc-hhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECC
Confidence            3667777777777654 2 667777777777777777654 46777788888888888887766  47778888888888


Q ss_pred             CCCccccc-cccccCCCCCCeeecccccccccCcc---ccCCCCCCcEEeC
Q psy12291        270 SNNIQELH-AGTFAGLTNLTALFLNNNLLRYLDTK---AFEPMLHLKKLQL  316 (404)
Q Consensus       270 ~n~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l  316 (404)
                      +|.++.+. +..+..+++|++|+|++|.++.+++.   .+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888775 66777888888888888888776542   2334677887764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=1.1e-16  Score=130.06  Aligned_cols=137  Identities=20%  Similarity=0.186  Sum_probs=96.2

Q ss_pred             CCCCeeEEEcCCCCCc--ccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCc
Q psy12291         43 IPVDIRVIDLGINQLS--TLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLT  120 (404)
Q Consensus        43 ~~~~l~~L~l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~  120 (404)
                      .+.++++|++++|.+.  .+ +..+..+++|+.|++++|.+..+  ..|..+++|++|++++|.+....+..+..+++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CcccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            4567888888888776  44 34467777888888888877776  4467777788888888877774444455677788


Q ss_pred             EEEccCCCCCcCCC-ccCCCCCCCCEEECCCCccccccc---ccccCCccCcEEeccCCCCCCCCC
Q psy12291        121 VVQLSYNAIESLPA-NVFHDLISLEELDLSQNVLTSIQY---GTFSGMYSLKRLKLQSNRINQLPP  182 (404)
Q Consensus       121 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~---~~l~~l~~L~~L~l~~~~l~~~~~  182 (404)
                      +|++++|.++.++. ..+..+++|+.|++++|.+..+..   ..+..+++|++|++++|.+..++.
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            88887777777653 456667777777777777776654   456667777777777776666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=1.8e-16  Score=128.81  Aligned_cols=93  Identities=24%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             hcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcccccc-ccccCCCCCCeeecccccccccCc---cccCCC
Q psy12291        233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHA-GTFAGLTNLTALFLNNNLLRYLDT---KAFEPM  308 (404)
Q Consensus       233 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l  308 (404)
                      +..+++|++|++++|.+....+..+..+++|+.|++++|.++.++. ..+..+++|++|++++|.++.++.   ..+..+
T Consensus        67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  146 (168)
T 2ell_A           67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL  146 (168)
T ss_dssp             CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred             hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence            3334444444444444444222233334444444444444444432 334444555555555555544443   344455


Q ss_pred             CCCcEEeCCCCCCcccC
Q psy12291        309 LHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       309 ~~L~~L~l~~n~l~~~~  325 (404)
                      ++|+.|++++|.+..++
T Consensus       147 ~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          147 PQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             SSCCEETTEETTSCBCC
T ss_pred             ccCcEecCCCCChhhcc
Confidence            55555555555554443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.65  E-value=2.5e-14  Score=132.02  Aligned_cols=267  Identities=15%  Similarity=0.238  Sum_probs=211.9

Q ss_pred             cCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCC
Q psy12291         65 FTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE  144 (404)
Q Consensus        65 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  144 (404)
                      +....+|+.+.+.. .++.|+..+|.++.+|+.+++.. .++.|+..+|.++ +|+.+.+..+ ++.+...+|.. .+|+
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~  116 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD  116 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence            55667899999975 58899999999999999999975 4889999999987 7888888654 78888888876 4899


Q ss_pred             EEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCccc------------CCCccCCC
Q psy12291        145 ELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFI------------RPGLFNYF  212 (404)
Q Consensus       145 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~~~l  212 (404)
                      .+.+..+ +..+...+|.+. +++.+.+.. .++.+....|..+.+++.+.+........            ....+...
T Consensus       117 ~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (379)
T 4h09_A          117 DFEFPGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA  193 (379)
T ss_dssp             EEECCTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred             cccCCCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence            9999764 566666777765 677777665 36777778888889999888876542211            11234445


Q ss_pred             CCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeec
Q psy12291        213 KHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFL  292 (404)
Q Consensus       213 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l  292 (404)
                      ..+..+.+.... ..+...++....+|+.+.+..+ +..+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+
T Consensus       194 ~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l  270 (379)
T 4h09_A          194 KTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF  270 (379)
T ss_dssp             CCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             ccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence            566666665532 3344456777889999998764 67777778889999999999765 88888899999999999999


Q ss_pred             ccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCC
Q psy12291        293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN  343 (404)
Q Consensus       293 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~N  343 (404)
                      .. .++.++..+|..+++|+.+.+.++.++.++...|..+.+|+.+.|..+
T Consensus       271 ~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          271 YA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            64 588888899999999999999999999999999999999999999654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=4.2e-16  Score=123.90  Aligned_cols=127  Identities=22%  Similarity=0.201  Sum_probs=69.5

Q ss_pred             CCCCEEECCCCcCC-CCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeee
Q psy12291        213 KHLTFLELSENWIS-SLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF  291 (404)
Q Consensus       213 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  291 (404)
                      ++++.|++++|.+. ...+..+..+++|+.|++++|.+..+  ..+..+++|+.|++++|.++...+..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            34455555555444 12223344555555555555555555  2355556666666666666553344444556666666


Q ss_pred             cccccccccC-ccccCCCCCCcEEeCCCCCCcccCc---ccccCCCCCcEEEcc
Q psy12291        292 LNNNLLRYLD-TKAFEPMLHLKKLQLDSNKLQYLAT---DSLSLLPNLITLKLA  341 (404)
Q Consensus       292 l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~l~  341 (404)
                      +++|+++.++ +..+..+++|++|++++|.++++++   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666665543 2455556666666666666666655   455566666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.63  E-value=5.4e-16  Score=126.93  Aligned_cols=133  Identities=20%  Similarity=0.260  Sum_probs=104.4

Q ss_pred             cCCCCCCCEEECCCCcCCCCChhhhcCC-CCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCC
Q psy12291        209 FNYFKHLTFLELSENWISSLNGDEFSQL-TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL  287 (404)
Q Consensus       209 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  287 (404)
                      +..+++|+.|++++|.+..++  .+..+ ++|+.|++++|.+..++  .+..+++|+.|++++|.++.+++..|..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            445667777777777777663  23333 48888888888888773  57788888888888888888877777888889


Q ss_pred             CeeecccccccccCc-cccCCCCCCcEEeCCCCCCcccCcc---cccCCCCCcEEEccCCcc
Q psy12291        288 TALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLATD---SLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       288 ~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~l~l~~Np~  345 (404)
                      ++|++++|+++.++. ..+..+++|+.|++++|.+..++..   .+..+++|+.|++++|+.
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            999999998887764 4677888999999999998887664   577889999999988865

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=1.3e-16  Score=158.92  Aligned_cols=178  Identities=21%  Similarity=0.228  Sum_probs=89.2

Q ss_pred             cccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCC
Q psy12291        158 YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLT  237 (404)
Q Consensus       158 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  237 (404)
                      +..+..+..|+.|+|++|.+..++...+ .+++|++|++++|.++.+ +..+..+++|++|+|++|.+..++ ..+..++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLP-AELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCC-SSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccC-hhhcCCC
Confidence            3455566666666666666666665543 566677777777766644 345666777777777777777553 4567777


Q ss_pred             CCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCC-CCCeeecccccccccCccccCCCCCCcEEeC
Q psy12291        238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT-NLTALFLNNNLLRYLDTKAFEPMLHLKKLQL  316 (404)
Q Consensus       238 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  316 (404)
                      +|++|++++|.+..+|.. |..+++|+.|+|++|.++...+..+.... .+..+++++|.++...+      ..|+.|++
T Consensus       294 ~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l  366 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEI  366 (727)
T ss_dssp             TCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC------
T ss_pred             CCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEe
Confidence            777777777777777663 67777777777777777766554443321 22246677776654332      34555666


Q ss_pred             CCC--------CCcccCcccccCCCCCcEEEccCCcc
Q psy12291        317 DSN--------KLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       317 ~~n--------~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      +.|        .+.......+..+..+....++.|-+
T Consensus       367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             -----------------------------------CC
T ss_pred             ecccccccccCCccccccchhhcccccceeeeecccc
Confidence            655        22222222233344445555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=1.4e-16  Score=158.58  Aligned_cols=191  Identities=23%  Similarity=0.221  Sum_probs=97.6

Q ss_pred             CCeeEEEcCCCCCcccChhhcCCCCCCCEE-----EccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCC
Q psy12291         45 VDIRVIDLGINQLSTLSKDAFTGLYKLTEL-----KLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRL  119 (404)
Q Consensus        45 ~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L-----~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L  119 (404)
                      ..++.|++.++.+..+... +.....|..+     ++..|.+. +++..|..++.|+.|+|++|.+..++...+ .+++|
T Consensus       173 ~~~~~l~L~~n~~~~~~~~-~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA-LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSC
T ss_pred             CccceEEeeCCCCCcchhh-HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCC
Confidence            3578888888877765332 2222222222     22233333 445567778888888888888888877655 67888


Q ss_pred             cEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCC
Q psy12291        120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNN  199 (404)
Q Consensus       120 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~  199 (404)
                      ++|+|++|.++.++.. |..+++|+.|+|++|.+..+ +..|.++++|++|+|++|.++.++.. |..+++|+.|++++|
T Consensus       250 ~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          250 TRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred             CEEEeeCCcCcccChh-hhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCC
Confidence            8888888888877643 56778888888888888765 45677778888888888888777665 677888888888888


Q ss_pred             cCcccCCCccCCCC-CCCEEECCCCcCCCCChhhhcCCCCCcEEECCCC
Q psy12291        200 RLSFIRPGLFNYFK-HLTFLELSENWISSLNGDEFSQLTSLKELHLGQN  247 (404)
Q Consensus       200 ~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  247 (404)
                      .+++..+..+.... ....+++++|.+....+      ..|+.|+++.|
T Consensus       327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             ccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            87765554443221 11235566666654433      24556666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=1.2e-15  Score=121.21  Aligned_cols=125  Identities=30%  Similarity=0.362  Sum_probs=62.1

Q ss_pred             ccCcEEeccCCCCC--CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEE
Q psy12291        165 YSLKRLKLQSNRIN--QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKEL  242 (404)
Q Consensus       165 ~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  242 (404)
                      ++|+.|++++|.++  .++ ..+..+++|++|++++|.++.+  ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45666666666665  333 2345566666666666655544  344555555555555555554333344444555555


Q ss_pred             ECCCCCCcccCc-ccccCCCCCcEEECcCCCcccccc---ccccCCCCCCeeec
Q psy12291        243 HLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQELHA---GTFAGLTNLTALFL  292 (404)
Q Consensus       243 ~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~l  292 (404)
                      ++++|.+..++. ..+..+++|+.|++++|.++.++.   ..+..+++|++|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            555555444321 234444444444444444444433   23334444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=2.6e-15  Score=122.86  Aligned_cols=135  Identities=19%  Similarity=0.254  Sum_probs=68.1

Q ss_pred             ccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCc
Q psy12291        161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLK  240 (404)
Q Consensus       161 l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  240 (404)
                      +.++.+|+.|++++|.++.++. .....++|++|++++|.++.+  ..+..+++|++|++++|.+..+++..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3344555666666665555432 112222555555555555544  2344455555555555555554444445555555


Q ss_pred             EEECCCCCCcccCc-ccccCCCCCcEEECcCCCccccccc---cccCCCCCCeeeccccccc
Q psy12291        241 ELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQELHAG---TFAGLTNLTALFLNNNLLR  298 (404)
Q Consensus       241 ~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~i~  298 (404)
                      +|++++|.+..++. ..+..+++|+.|++++|.+..++..   .+..+++|++|++++|.+.
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            55555555554443 2344555555555555555544332   3445555555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.54  E-value=3.7e-14  Score=129.27  Aligned_cols=114  Identities=23%  Similarity=0.306  Sum_probs=95.9

Q ss_pred             CCCCc-eecCCCceEEecCC-CCCccCCCCCCCCCeeEEEcCC-CCCcccChhhcCCCCCCCEEEccCCcCcccCccccc
Q psy12291         14 CEGPC-RCRPEIHTLSCWKQ-DMEELPFDQIIPVDIRVIDLGI-NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFI   90 (404)
Q Consensus        14 ~~~~c-~c~~~~~~~~~~~~-~l~~ip~~~~~~~~l~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~   90 (404)
                      ||..| .|..  ..++|.++ +++.+|. .....+|+.|++++ |.+..+.+..|.++++|+.|+|++|+|.++++..|.
T Consensus         1 cp~~c~~C~~--~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~   77 (347)
T 2ifg_A            1 CPDACCPHGS--SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH   77 (347)
T ss_dssp             CCSSSCCSSS--SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred             CCCcCccccC--CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc
Confidence            78889 8864  57899998 8999998 44445699999986 889988888899999999999999999988888888


Q ss_pred             CCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCc
Q psy12291         91 STINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES  131 (404)
Q Consensus        91 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~  131 (404)
                      .+++|++|+|++|.|+.+|+..|..++ |+.|++.+|.+..
T Consensus        78 ~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           78 FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            899999999999999888887776665 8888888887763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.49  E-value=5.5e-17  Score=135.56  Aligned_cols=113  Identities=31%  Similarity=0.396  Sum_probs=51.6

Q ss_pred             hhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCC
Q psy12291        232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHL  311 (404)
Q Consensus       232 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L  311 (404)
                      .+..+++|++|++++|.+..++  .+..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++  .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCC
Confidence            3444444444444444444443  24444444444444444444422 2233344555555555444432  23344445


Q ss_pred             cEEeCCCCCCcccCc-ccccCCCCCcEEEccCCcccccc
Q psy12291        312 KKLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNPWHCDC  349 (404)
Q Consensus       312 ~~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~Np~~C~c  349 (404)
                      +.|++++|+++.++. ..+..+++|+.|++++|++.+.|
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence            555555555544332 23444555555555555554443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=3.1e-15  Score=124.89  Aligned_cols=152  Identities=27%  Similarity=0.323  Sum_probs=124.5

Q ss_pred             CCCCCeEecCCCcCcccCCC------ccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCC
Q psy12291        188 LKYLDFLSLRNNRLSFIRPG------LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQ  261 (404)
Q Consensus       188 l~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~  261 (404)
                      ...++.++++.+.+....+.      .+..+++|++|++++|.+..++  .+..+++|+.|++++|.+..++. .+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCC
Confidence            34555555555555544333      6788999999999999999876  78889999999999999998876 566678


Q ss_pred             CCcEEECcCCCccccccccccCCCCCCeeecccccccccCc-cccCCCCCCcEEeCCCCCCcccCcc----------ccc
Q psy12291        262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLATD----------SLS  330 (404)
Q Consensus       262 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~  330 (404)
                      +|+.|++++|.++.++  .+..+++|++|++++|+++.++. ..+..+++|++|++++|.+....+.          .+.
T Consensus        94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~  171 (198)
T 1ds9_A           94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred             cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence            9999999999999975  47889999999999999998765 6788999999999999999776433          367


Q ss_pred             CCCCCcEEEccCCccc
Q psy12291        331 LLPNLITLKLAKNPWH  346 (404)
Q Consensus       331 ~l~~L~~l~l~~Np~~  346 (404)
                      .+++|+.|+  +|++.
T Consensus       172 ~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          172 RLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HCSSCSEEC--CGGGT
T ss_pred             hCCCcEEEC--CcccC
Confidence            889999887  77764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=3.8e-14  Score=129.70  Aligned_cols=116  Identities=18%  Similarity=0.131  Sum_probs=58.0

Q ss_pred             CCCEEECCCCcCCCCChhhh-----cCCCCCcEEECCCCCCcccCcc----cccCCCCCcEEECcCCCccccc----ccc
Q psy12291        214 HLTFLELSENWISSLNGDEF-----SQLTSLKELHLGQNYIETIPAG----SFANLQSLEKLFLYSNNIQELH----AGT  280 (404)
Q Consensus       214 ~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~----~~~  280 (404)
                      +|+.|++++|.++......+     ...++|++|++++|.++.....    .+..+++|++|+|++|.+++..    ...
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            44455555554443322222     1234566666666655432211    2244556666666666655433    123


Q ss_pred             ccCCCCCCeeecccccccccCc----cccCCCCCCcEEeCCCCCCcccCcccc
Q psy12291        281 FAGLTNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQYLATDSL  329 (404)
Q Consensus       281 ~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~  329 (404)
                      +...++|++|+|++|.|+....    .++...++|++|+|++|.++......+
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            4445566666666666654332    223334566666666666665444333

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=1.3e-13  Score=126.24  Aligned_cols=158  Identities=18%  Similarity=0.123  Sum_probs=112.8

Q ss_pred             CCCCeEecCCCcCcccCCCc----cC-CCCCCCEEECCCCcCCCCChhhh-cCCCCCcEEECCCCCCcccCcccc-----
Q psy12291        189 KYLDFLSLRNNRLSFIRPGL----FN-YFKHLTFLELSENWISSLNGDEF-SQLTSLKELHLGQNYIETIPAGSF-----  257 (404)
Q Consensus       189 ~~L~~L~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~-----  257 (404)
                      ++|+.|++++|.++......    +. ..++|+.|++++|.+.......+ ..+++|++|++++|.+.......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            34556666666554322111    11 23678888888887765433332 245689999999999976543333     


Q ss_pred             cCCCCCcEEECcCCCccccccc----cccCCCCCCeeecccccccccC----ccccCCCCCCcEEeCCCCCCcccCcc--
Q psy12291        258 ANLQSLEKLFLYSNNIQELHAG----TFAGLTNLTALFLNNNLLRYLD----TKAFEPMLHLKKLQLDSNKLQYLATD--  327 (404)
Q Consensus       258 ~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~--  327 (404)
                      ...++|+.|+|++|.+++....    .+...++|++|+|++|.|+...    ...+...++|+.|+|++|.++.....  
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            3468999999999999875443    3467899999999999998754    35566778999999999999875443  


Q ss_pred             --cccCCCCCcEEEccCCccc
Q psy12291        328 --SLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       328 --~~~~l~~L~~l~l~~Np~~  346 (404)
                        .+...++|+.|+|++|++.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence              3445789999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=8.8e-10  Score=99.96  Aligned_cols=64  Identities=19%  Similarity=0.219  Sum_probs=32.0

Q ss_pred             CCCCcEEECcCCCccccccccc---cCCCCCCeeecccccccccCccc----cCCCCCCcEEeCCCCCCcc
Q psy12291        260 LQSLEKLFLYSNNIQELHAGTF---AGLTNLTALFLNNNLLRYLDTKA----FEPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       260 l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~  323 (404)
                      +|+|+.|+|.+|.+.+.....+   ..+++|++|+|+.|.++......    +..+++|+.|++++|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            4666666666665553211111   23456666666666555432211    1234556666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=1.1e-08  Score=92.76  Aligned_cols=133  Identities=17%  Similarity=0.196  Sum_probs=82.5

Q ss_pred             cCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccccc--CCCCCcEEECcC--CC------cccccc
Q psy12291        209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFA--NLQSLEKLFLYS--NN------IQELHA  278 (404)
Q Consensus       209 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--~l~~L~~L~L~~--n~------l~~~~~  278 (404)
                      +..+|+|+.|.+.++.-...++  + .+++|++|++..+.+..-....+.  .+|+|+.|+|+.  +.      +..+..
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            3445666666666552111221  2 256777777777765432222222  567888887742  11      222211


Q ss_pred             ccc--cCCCCCCeeecccccccccCcccc---CCCCCCcEEeCCCCCCcccCccc----ccCCCCCcEEEccCCcc
Q psy12291        279 GTF--AGLTNLTALFLNNNLLRYLDTKAF---EPMLHLKKLQLDSNKLQYLATDS----LSLLPNLITLKLAKNPW  345 (404)
Q Consensus       279 ~~~--~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~l~l~~Np~  345 (404)
                       .+  ..+|+|++|++++|.+.......+   ..+++|++|+|+.|.+.......    +..+++|+.|++++|++
T Consensus       245 -~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          245 -LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             -GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             -HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence             12  357999999999998875322222   35789999999999998754322    34578999999998875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.64  E-value=6.3e-08  Score=73.95  Aligned_cols=66  Identities=27%  Similarity=0.492  Sum_probs=56.7

Q ss_pred             CCCCCceecCCCceEEecCCCCC--ccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc
Q psy12291         13 CCEGPCRCRPEIHTLSCWKQDME--ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS   82 (404)
Q Consensus        13 ~~~~~c~c~~~~~~~~~~~~~l~--~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~   82 (404)
                      .||..|.|..  ..++|.+++++  .+|..  +|.++++|+|++|.|+.+....|..+++|+.|+|++|.+.
T Consensus         1 ~CP~~C~C~~--~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A            1 PCPAPCSCAG--TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCCTTCEEET--TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCCEEcC--CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3899999974  68999999999  99976  8888999999999999988888888888888888887554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.48  E-value=3e-08  Score=81.15  Aligned_cols=114  Identities=15%  Similarity=0.124  Sum_probs=68.1

Q ss_pred             hcCCCCCcEEECCCC-CCcccC----cccccCCCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccC--
Q psy12291        233 FSQLTSLKELHLGQN-YIETIP----AGSFANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLD--  301 (404)
Q Consensus       233 ~~~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~--  301 (404)
                      +...++|++|++++| .+....    ...+...++|++|+|++|.+.+...    ..+...++|++|+|++|.|+...  
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344555666666665 554321    1123445667777777776665332    22334466777777777776533  


Q ss_pred             --ccccCCCCCCcEEeC--CCCCCcccCc----ccccCCCCCcEEEccCCccc
Q psy12291        302 --TKAFEPMLHLKKLQL--DSNKLQYLAT----DSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       302 --~~~~~~l~~L~~L~l--~~n~l~~~~~----~~~~~l~~L~~l~l~~Np~~  346 (404)
                        ..++...+.|++|+|  ++|.+.....    ..+...++|++|+|++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              244555677888888  7787776432    23445678888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=6.7e-08  Score=79.07  Aligned_cols=115  Identities=17%  Similarity=0.029  Sum_probs=70.0

Q ss_pred             cCCCCCCCEEECCCC-cCCCCCh----hhhcCCCCCcEEECCCCCCcccCc----ccccCCCCCcEEECcCCCcccccc-
Q psy12291        209 FNYFKHLTFLELSEN-WISSLNG----DEFSQLTSLKELHLGQNYIETIPA----GSFANLQSLEKLFLYSNNIQELHA-  278 (404)
Q Consensus       209 ~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-  278 (404)
                      +...+.|++|++++| .+.....    ..+...++|++|++++|.+.....    ..+...++|++|+|++|.|.+... 
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            444566666666666 5543221    234455667777777776654221    123445677777887777775432 


Q ss_pred             ---ccccCCCCCCeeec--ccccccccCc----cccCCCCCCcEEeCCCCCCcc
Q psy12291        279 ---GTFAGLTNLTALFL--NNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQY  323 (404)
Q Consensus       279 ---~~~~~~~~L~~L~l--~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~  323 (404)
                         .++...++|++|+|  ++|.|+....    ..+...+.|++|+|++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence               34555677888888  6777765432    344455778888888887653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=2.3e-07  Score=74.04  Aligned_cols=93  Identities=15%  Similarity=0.102  Sum_probs=66.2

Q ss_pred             ccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCC-cCcccCcccccCC----CCCCEEeCCCC-CCcccC
Q psy12291         36 ELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKN-HLSELPGKLFIST----INLSTMDLSQN-LIKTLP  109 (404)
Q Consensus        36 ~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~----~~L~~L~l~~n-~l~~~~  109 (404)
                      .+|........|++||++++.|+......+.++++|++|+|++| .+++-....+..+    ++|++|++++| .+++-.
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            45554334457999999999888777777888999999999988 4775444444543    46888888888 477543


Q ss_pred             ccccCCCCCCcEEEccCCC
Q psy12291        110 STFFKGAIRLTVVQLSYNA  128 (404)
Q Consensus       110 ~~~~~~~~~L~~L~l~~n~  128 (404)
                      -..+..+++|++|+++++.
T Consensus       132 l~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCT
T ss_pred             HHHHhcCCCCCEEECCCCC
Confidence            3345667788888887764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=1.5e-07  Score=75.06  Aligned_cols=86  Identities=13%  Similarity=0.065  Sum_probs=47.8

Q ss_pred             CCcEEECcCCCccccccccccCCCCCCeeeccccc-ccccCccccCCC----CCCcEEeCCCC-CCcccCcccccCCCCC
Q psy12291        262 SLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL-LRYLDTKAFEPM----LHLKKLQLDSN-KLQYLATDSLSLLPNL  335 (404)
Q Consensus       262 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l----~~L~~L~l~~n-~l~~~~~~~~~~l~~L  335 (404)
                      .|+.|+++++.+++.....+.++++|++|+|++|. |+......+..+    ++|++|+|++| ++++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45666666665555555555556666666666653 544433333332    35666666665 3555444445566666


Q ss_pred             cEEEccCCcccc
Q psy12291        336 ITLKLAKNPWHC  347 (404)
Q Consensus       336 ~~l~l~~Np~~C  347 (404)
                      +.|+++++|-.-
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            777776655433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=8.1e-07  Score=76.40  Aligned_cols=41  Identities=27%  Similarity=0.258  Sum_probs=18.4

Q ss_pred             CCCCcEEECcCCCcccccc--ccccCCCCCCeeeccccccccc
Q psy12291        260 LQSLEKLFLYSNNIQELHA--GTFAGLTNLTALFLNNNLLRYL  300 (404)
Q Consensus       260 l~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~i~~~  300 (404)
                      +++|+.|+|++|.|+.+..  ..+..+++|+.|+|++|+|+.+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            4445555555555444332  2223344444444444444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.04  E-value=2.5e-06  Score=73.36  Aligned_cols=63  Identities=24%  Similarity=0.351  Sum_probs=34.0

Q ss_pred             CCCCCcEEECCCCCCcccCc--ccccCCCCCcEEECcCCCcccccc-ccccCCCCCCeeeccccccc
Q psy12291        235 QLTSLKELHLGQNYIETIPA--GSFANLQSLEKLFLYSNNIQELHA-GTFAGLTNLTALFLNNNLLR  298 (404)
Q Consensus       235 ~l~~L~~L~l~~~~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~  298 (404)
                      .+++|+.|++++|.+..++.  ..+..+++|+.|+|++|.|+++.. ..+..+ +|++|+|++|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence            45566666666666655432  234456666666666666665521 222222 5555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.30  E-value=0.00027  Score=57.44  Aligned_cols=111  Identities=15%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             CCCCCcEEECCCC-CCcccC----cccccCCCCCcEEECcCCCcccccccc----ccCCCCCCeeecccccccccCc---
Q psy12291        235 QLTSLKELHLGQN-YIETIP----AGSFANLQSLEKLFLYSNNIQELHAGT----FAGLTNLTALFLNNNLLRYLDT---  302 (404)
Q Consensus       235 ~l~~L~~L~l~~~-~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~~L~~L~l~~n~i~~~~~---  302 (404)
                      .-+.|++|+++++ .+....    ...+...+.|+.|+|++|.|.+....+    +..-+.|++|+|++|+|+....   
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3456666777664 554321    123445567777777777777544433    3345778888888887775433   


Q ss_pred             -cccCCCCCCcEEeCCCCCCcccCc-------ccccCCCCCcEEEccCCcc
Q psy12291        303 -KAFEPMLHLKKLQLDSNKLQYLAT-------DSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       303 -~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~l~l~~Np~  345 (404)
                       +++..-..|++|+|++|....+..       ..+..-++|+.|+++.|..
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             445555678888887653322222       2345567888999876543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.15  E-value=0.00035  Score=56.78  Aligned_cols=114  Identities=12%  Similarity=0.021  Sum_probs=69.5

Q ss_pred             cCCCCCCCEEECCCC-cCCCCC----hhhhcCCCCCcEEECCCCCCcccCcc----cccCCCCCcEEECcCCCcccccc-
Q psy12291        209 FNYFKHLTFLELSEN-WISSLN----GDEFSQLTSLKELHLGQNYIETIPAG----SFANLQSLEKLFLYSNNIQELHA-  278 (404)
Q Consensus       209 ~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~-  278 (404)
                      +..-+.|+.|+++++ .+....    ..++..-..|+.|++++|.+.+....    .+...+.|+.|+|++|.|.+... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344556777777664 554322    13344556788888888877644322    23355778888888888876443 


Q ss_pred             ---ccccCCCCCCeeecccccc---cccC----ccccCCCCCCcEEeCCCCCCc
Q psy12291        279 ---GTFAGLTNLTALFLNNNLL---RYLD----TKAFEPMLHLKKLQLDSNKLQ  322 (404)
Q Consensus       279 ---~~~~~~~~L~~L~l~~n~i---~~~~----~~~~~~l~~L~~L~l~~n~l~  322 (404)
                         .++..-+.|++|+|++|..   ..-.    .+++..-+.|+.|+++.|.+.
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               2444556788888876533   3211    234555578888888776543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.64  E-value=0.2  Score=35.51  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=18.0

Q ss_pred             cccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECC
Q psy12291        106 KTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLS  149 (404)
Q Consensus       106 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  149 (404)
                      +.|...+|.++.+|+.+.|..+ ++.|...+|.++.+|+.+.+.
T Consensus         9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~   51 (100)
T 2lz0_A            9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT   51 (100)
T ss_dssp             CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred             CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence            3344444444444444444332 334444444444444444443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=92.79  E-value=0.27  Score=34.80  Aligned_cols=47  Identities=19%  Similarity=0.317  Sum_probs=25.7

Q ss_pred             CCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291         56 QLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN  103 (404)
Q Consensus        56 ~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  103 (404)
                      .++.|...+|.++.+|+.+.|..+ ++.|...+|.+|.+|+.+.+...
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            445555555666666666555543 45555555555555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	404
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-31
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-29
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-23
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-20
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-12
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-10
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-08
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	8e-08
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (297), Expect = 2e-31
 Identities = 66/274 (24%), Positives = 116/274 (42%), Gaps = 6/274 (2%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ-SNRIN 178
                    ++++P  +       + + L  N ++ +   +F    +L  L L  +    
Sbjct: 14  VTTSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
                              N +L  + P  F+    L  L L    +  L    F  L +
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
           L+ L+L  N ++ +P  +F +L +L  LFL+ N I  +    F GL +L  L L+ N + 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL 358
           ++   AF  +  L  L L +N L  L T++L+ L  L  L+L  NPW CDC    +  WL
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250

Query: 359 RANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLC 392
           +  + +   S+  C  P  L G+ ++ ++ +DL 
Sbjct: 251 Q--KFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (217), Expect = 2e-20
 Identities = 67/264 (25%), Positives = 105/264 (39%), Gaps = 7/264 (2%)

Query: 14  CEGPCRCRPE-IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
           C G C C  E   T SC +Q ++ +P    IP   + I L  N++S +   +F     LT
Sbjct: 2   CPGACVCYNEPKVTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLT 59

Query: 73  ELK-LRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES 131
            L                   +           ++++    F G  RL  + L    ++ 
Sbjct: 60  ILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE 119

Query: 132 LPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYL 191
           L   +F  L +L+ L L  N L ++   TF  + +L  L L  NRI+ +P   F  L  L
Sbjct: 120 LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 192 DFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE- 250
           D L L  NR++ + P  F     L  L L  N +S+L  +  + L +L+ L L  N    
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 251 TIPAGSFANLQSLEKLFLYSNNIQ 274
              A        L+K    S+ + 
Sbjct: 240 DCRARPL--WAWLQKFRGSSSEVP 261

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (279), Expect = 9e-29
 Identities = 75/310 (24%), Positives = 140/310 (45%), Gaps = 19/310 (6%)

Query: 17  PCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKL 76
           P RC+  +  + C    +E++P  + +P D  ++DL  N+++ +    F  L  L  L L
Sbjct: 5   PFRCQCHLRVVQCSDLGLEKVP--KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 62

Query: 77  RKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANV 136
             N +S++    F   + L  + LS+N +K LP    K    L   ++  N I  +  +V
Sbjct: 63  INNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL---RVHENEITKVRKSV 119

Query: 137 FHDLISLEELDLSQNVLTSIQY--GTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL 194
           F+ L  +  ++L  N L S     G F GM  L  +++    I  +P G+   L  L   
Sbjct: 120 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH-- 177

Query: 195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPA 254
            L  N+++ +         +L  L LS N IS+++    +    L+ELHL  N +  +P 
Sbjct: 178 -LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 255 GSFANLQSLEKLFLYSNNIQELHAGTFAG------LTNLTALFLNNNLLRYLDT--KAFE 306
           G   + + ++ ++L++NNI  + +  F          + + + L +N ++Y +     F 
Sbjct: 237 GLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 295

Query: 307 PMLHLKKLQL 316
            +     +QL
Sbjct: 296 CVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.2 bits (243), Expect = 1e-23
 Identities = 70/300 (23%), Positives = 116/300 (38%), Gaps = 18/300 (6%)

Query: 71  LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE 130
           L  ++     L ++P  L   T  L   DL  N I  +    FK    L  + L  N I 
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPDTALL---DLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 131 SLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKY 190
            +    F  L+ LE L LS+N L  +       +  L+      N I ++   +F+ L  
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQ 125

Query: 191 LDFLSLRNNRLSFIR--PGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNY 248
           +  + L  N L       G F   K L+++ +++  I+++         SL ELHL  N 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNK 182

Query: 249 IETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM 308
           I  + A S   L +L KL L  N+I  +  G+ A   +L  L LNNN L           
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADH 241

Query: 309 LHLKKLQLDSNKLQYLATDS------LSLLPNLITLKLAKNPWHCDCAILYMARWLRANR 362
            +++ + L +N +  + ++        +   +   + L  NP           R +    
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.1 bits (214), Expect = 4e-20
 Identities = 70/251 (27%), Positives = 97/251 (38%), Gaps = 31/251 (12%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
              V      + +LP ++  D      L LS+N+L +    T      L +L L  +R  
Sbjct: 12  HLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNL--DRAE 66

Query: 179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTS 238
                +   L  L      ++      P L      LT L++S N ++SL       L  
Sbjct: 67  LTKLQVDGTLPVL-GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 239 LKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLR 298
           L+EL+L  N ++T+P G       LEKL L +NN+ EL AG   GL NL  L L  N L 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 299 YLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWL 358
            +    F                             L    L  NPW C+C ILY  RWL
Sbjct: 186 TIPKGFFG-------------------------SHLLPFAFLHGNPWLCNCEILYFRRWL 220

Query: 359 RANRRKVWDSK 369
           + N   V+  K
Sbjct: 221 QDNAENVYVWK 231

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 7e-13
 Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 6/206 (2%)

Query: 18  CRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLR 77
                    ++C K+++  LP D  +P D  ++ L  N L T S        +LT+L L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 78  KNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVF 137
           +  L++L     +  +    +  +Q     L             + +S+N + SLP    
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTV---LDVSFNRLTSLPLGAL 120

Query: 138 HDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLR 197
             L  L+EL L  N L ++  G  +    L++L L +N + +LP G+ + L+ LD L L+
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 198 NNRLSFIRPGLFNYFKHLTFLELSEN 223
            N L  I  G F     L F  L  N
Sbjct: 181 ENSLYTIPKGFFG-SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 232 EFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALF 291
           E S++ S  E++  +  +  +P     +      L L  N +      T    T LT L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 292 LNNNLLRYLDTKAFEPMLHL 311
           L+   L  L      P+L  
Sbjct: 62  LDRAELTKLQVDGTLPVLGT 81

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 1/141 (0%)

Query: 11  YRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYK 70
                      P + TL      ++ LP        + V+D+  N+L++L   A  GL +
Sbjct: 66  ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 71  LTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIE 130
           L EL L+ N L  LP  L   T  L  + L+ N +  LP+    G   L  + L  N++ 
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185

Query: 131 SLPANVFHDLISLEELDLSQN 151
           ++P   F     L    L  N
Sbjct: 186 TIPKGFF-GSHLLPFAFLHGN 205

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.6 bits (187), Expect = 6e-16
 Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 16/199 (8%)

Query: 97  TMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSI 156
           ++  + N I  +          L  + L+ N ++ +       L +L +LDL+ N ++++
Sbjct: 201 SLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNL 256

Query: 157 QYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLT 216
                SG+  L  LKL +N+I+ + P     L  L  L L  N+L  I P   +  K+LT
Sbjct: 257 --APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 310

Query: 217 FLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL 276
           +L L  N IS +     S LT L+ L    N +  +   S ANL ++  L    N I +L
Sbjct: 311 YLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDL 366

Query: 277 HAGTFAGLTNLTALFLNNN 295
                A LT +T L LN+ 
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 1e-14
 Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 18/205 (8%)

Query: 68  LYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN 127
           L  L  L    N +S++     ++  NL  + L+ N +K + +        LT + L+ N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGT--LASLTNLTDLDLANN 251

Query: 128 AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP-PGIFD 186
            I +L       L  L EL L  N +++I     S +  L  L       NQL       
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNI-----SPLAGLTALTNLELNENQLEDISPIS 304

Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
           +LK L +L+L  N +S I P   +    L  L  + N +S +     + LT++  L  G 
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360

Query: 247 NYIETIPAGSFANLQSLEKLFLYSN 271
           N I  +     ANL  + +L L   
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.6 bits (156), Expect = 4e-12
 Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 16/207 (7%)

Query: 137 FHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSL 196
              L +LE L  + N ++ I       + +L  L L  N++  +       L  L  L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT--LASLTNLTDLDL 248

Query: 197 RNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS 256
            NN++S + P   +    LT L+L  N IS+++    + LT+L  L L +N +E I    
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS--P 302

Query: 257 FANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQL 316
            +NL++L  L LY NNI ++     + LT L  LF  NN +  +   +   + ++  L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSA 358

Query: 317 DSNKLQYLATDSLSLLPNLITLKLAKN 343
             N++  L    L+ L  +  L L   
Sbjct: 359 GHNQISDL--TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 68/368 (18%), Positives = 125/368 (33%), Gaps = 73/368 (19%)

Query: 35  EELPFDQIIPVDI--RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST 92
           ++ P +QI         +   + + +     + T L ++T L+  +  +  + G      
Sbjct: 8   QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYL 65

Query: 93  INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA------------------ 134
            NL+ ++ S N +  +     K   +L  + ++ N I  +                    
Sbjct: 66  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 135 ------------------NVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR 176
                             N   D+ +L  L   Q +    Q      + +L  L+     
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 177 INQLPPGIFD-DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
            N++        L  L+ L   NN++S I P       +L  L L+ N +  +     + 
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLAS 239

Query: 236 LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQEL------------------- 276
           LT+L +L L  N I  +     + L  L +L L +N I  +                   
Sbjct: 240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 277 -HAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
                 + L NLT L L  N +   D      +  L++L   +NK+  +   SL+ L N+
Sbjct: 298 EDISPISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDV--SSLANLTNI 353

Query: 336 ITLKLAKN 343
             L    N
Sbjct: 354 NWLSAGHN 361

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 9   SWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGL 68
              +             T     ++  E         ++  + L  N +S +S    + L
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSL 328

Query: 69  YKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA 128
            KL  L    N +S++      +  N++ +    N I  L         R+T + L+  A
Sbjct: 329 TKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 59/315 (18%), Positives = 107/315 (33%), Gaps = 53/315 (16%)

Query: 99  DLSQNLIKTLPSTFFKGAI------RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNV 152
            L++ +   L  T     +      ++T +Q     I+S+       L +L +++ S N 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ 77

Query: 153 LTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD-------------------------- 186
           LT I       +  L  + + +N+I  + P                              
Sbjct: 78  LTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 187 -------DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN----GDEFSQ 235
                   +  +  LS   +             K L  L   E    S N        ++
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 236 LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295
           LT+L+ L    N I  I         +L++L L  N ++++  GT A LTNLT L L NN
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 251

Query: 296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA 355
            +  L       +  L +L+L +N++  ++  +       + L   +       + L   
Sbjct: 252 QISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 356 RWLRANRRKVWDSKP 370
            +L      + D  P
Sbjct: 310 TYLTLYFNNISDISP 324

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 172 LQSNRINQLPP--GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN 229
           L S  I Q  P   IF D    + +     + +            +T L+     I S++
Sbjct: 1   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID 60

Query: 230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLF 267
           G     L +L +++   N +  I      NL  L  + 
Sbjct: 61  G--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 4e-12
 Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 3/149 (2%)

Query: 237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNN-IQELHAGTFAGLTNLTALFLNNN 295
                L   ++             ++L +L++ +   +Q L      GL  L  L +  +
Sbjct: 8   HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMA 355
            LR++   AF     L +L L  N L+ L+  ++  L       L+ NP HC CA+ ++ 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL-VLSGNPLHCSCALRWLQ 125

Query: 356 RWLRANRRKVWDSKPTCRGPGNLGGKSVE 384
           RW       V + K  C G G L      
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 2/147 (1%)

Query: 142 SLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR-INQLPPGIFDDLKYLDFLSLRNNR 200
               L  +++      +    G  +L  L +++ + +  L       L  L  L++  + 
Sbjct: 9   GSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANL 260
           L F+ P  F++   L+ L LS N + SL+      L+  + +  G     +         
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 261 QSLEKLFLYSNNIQELHAGTFAGLTNL 287
           +      +    +Q    G  A + N 
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNA 154

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 4e-10
 Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 26/264 (9%)

Query: 13  CCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLT 72
           C    C C        C +  + E+P D  +P +   +   + +L  + K AF+G   L 
Sbjct: 1   CHHRICHCSN--RVFLCQESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLE 56

Query: 73  ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESL 132
           ++++ +N                        +I+    +       + + + +     + 
Sbjct: 57  KIEISQND--------------------VLEVIEADVFSNLPKLHEIRIEKANNLLYINP 96

Query: 133 PANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
            A      +    +  +        +   S    L  ++   N                 
Sbjct: 97  EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 156

Query: 193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETI 252
            L L  N +  I    FN  +         N +  L  D F   +    L + +  I ++
Sbjct: 157 ILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 216

Query: 253 PAGSFANLQSLEKLFLYSNNIQEL 276
           P+    NL+ L        N+++L
Sbjct: 217 PSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 2e-08
 Identities = 34/228 (14%), Positives = 68/228 (29%), Gaps = 7/228 (3%)

Query: 72  TELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNA--- 128
                +++ ++E+P  L  + I L         ++ +    F G   L  +++S N    
Sbjct: 11  RVFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 129 -IESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDD 187
            IE+   +    L  +     +  +  + +            +     +       I   
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 188 LKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQN 247
            K L  +    N  +  R            L L++N I  ++   F+     +      N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 248 YIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295
            +E +P   F        L +    I  L +     L  L A    N 
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 7e-07
 Identities = 38/225 (16%), Positives = 62/225 (27%), Gaps = 7/225 (3%)

Query: 120 TVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNR--- 176
            V     + +  +P+++     +  EL      L  IQ G FSG   L+++++  N    
Sbjct: 11  RVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 177 -INQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQ 235
            I          L  +      N                   +  +            S 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 236 LTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNN 295
              L ++    N                  L+L  N IQE+H   F G         +NN
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 296 LLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKL 340
            L  L    F        L +   ++  L +  L  L  L     
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 3e-05
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 119 LTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
             +     N +E LP +VFH       LD+S+  + S+       +  L+        + 
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

Query: 179 QLPP 182
           +LP 
Sbjct: 237 KLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 2/110 (1%)

Query: 1   WIKSDKEDSWYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL 60
            I+ +                  +          E             +     N L  L
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 61  SKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPS 110
             D F G      L + +  +  LP     +   L         +K LP+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPT 240

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRP 206
           +L    +  ++    S  Y   +  L    +   P            L+ R++  + +  
Sbjct: 3   ELKPEQVEQLK-LIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSSMAATL-R 58

Query: 207 GLFNYFKHLTFLELSENWISSLNG--DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLE 264
            +      L  L LS N +  L+       +  +LK L+L  N +++           LE
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 265 KLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEP 307
           +L+L  N++ +        ++ +   F     L  LD     P
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPK---LLRLDGHELPP 158

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 6/143 (4%)

Query: 75  KLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPA 134
           +L+   + +L   +     + S   L    +++ P           V+    +   +L  
Sbjct: 3   ELKPEQVEQLKLIMS-KRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLR- 58

Query: 135 NVFHDLISLEELDLSQNVLTSIQ--YGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLD 192
            +  ++  L  L+LS N L  +           +LK L L  N +             L+
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 193 FLSLRNNRLSFIRPGLFNYFKHL 215
            L L  N LS        Y   +
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 24/117 (20%), Positives = 38/117 (32%), Gaps = 10/117 (8%)

Query: 231 DEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNI--QELHAGTFAGLTNLT 288
            +         L+   +   T+      N+  L  L L +N +   +  +       NL 
Sbjct: 36  PDLVAQNIDVVLNRRSSMAATLR-IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLK 94

Query: 289 ALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDS-------LSLLPNLITL 338
            L L+ N L+          L L++L LD N L     D            P L+ L
Sbjct: 95  ILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 8e-08
 Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 31/204 (15%)

Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHLGQNYIETI 252
           +      L  I   +     H T L L++N      +   F +L  L +L L +N +  I
Sbjct: 13  VDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 253 PAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK 312
              +F     +++L L  N I+E+    F GL  L  L L +N +  +   +FE +    
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL---- 125

Query: 313 KLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTC 372
                                +L +L LA NP++C+C + + A W    ++ +      C
Sbjct: 126 --------------------NSLTSLNLASNPFNCNCHLAWFAEW--LRKKSLNGGAARC 163

Query: 373 RGPGNLGGKSVEDMSFDDL-CEGQ 395
             P  +    ++D+   +  C  +
Sbjct: 164 GAPSKVRDVQIKDLPHSEFKCSSE 187

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 1e-07
 Identities = 40/184 (21%), Positives = 67/184 (36%), Gaps = 6/184 (3%)

Query: 166 SLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWI 225
               +      + ++P  I      L      N        GLF    HL  LEL  N +
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 226 SSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLT 285
           + +  + F   + ++EL LG+N I+ I    F  L  L+ L LY N I  +  G+F  L 
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 286 NLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW 345
           +LT      +     +         L+K  L+    +  A   +    ++    L  + +
Sbjct: 127 SLT-SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEF 182

Query: 346 HCDC 349
            C  
Sbjct: 183 KCSS 186

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 31/210 (14%)

Query: 14  CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTE 73
           C   C C     T+ C  + ++E+P D  IP+    + L  N                  
Sbjct: 2   CPAMCHCEGT--TVDCTGRGLKEIPRD--IPLHTTELLLNDN------------------ 39

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
                         LF    +L  ++L +N +  +    F+GA  +  +QL  N I+ + 
Sbjct: 40  -----ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94

Query: 134 ANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDF 193
             +F  L  L+ L+L  N ++ +  G+F  + SL       N  +           + ++
Sbjct: 95  NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS----LNLASNPFNCNCHLAWFAEW 150

Query: 194 LSLRNNRLSFIRPGLFNYFKHLTFLELSEN 223
           L  ++      R G  +  + +   +L  +
Sbjct: 151 LRKKSLNGGAARCGAPSKVRDVQIKDLPHS 180

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 9/149 (6%)

Query: 122 VQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP 181
           V+L+   IE      + + +   ELDL    +  I+    + +     +    N I +L 
Sbjct: 1   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD 57

Query: 182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG-DEFSQLTSLK 240
              F  L+ L  L + NNR+  I  GL      LT L L+ N +  L   D  + L SL 
Sbjct: 58  G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 115

Query: 241 ELHLGQNYIETIP---AGSFANLQSLEKL 266
            L + +N +             +  +  L
Sbjct: 116 YLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 6e-06
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 220 LSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAG 279
           L+   I      +++     +EL L    I  I     A L   + +    N I++L   
Sbjct: 3   LTAELIE--QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD-- 57

Query: 280 TFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT-DSLSLLPNLITL 338
            F  L  L  L +NNN +  +     + +  L +L L +N L  L   D L+ L +L  L
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 339 KLAKNPWHCDC 349
            + +NP     
Sbjct: 118 CILRNPVTNKK 128

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 209 FNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFL 268
           F+    L       N  S+          SL+EL++  N +  +PA        LE+L  
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIA 311

Query: 269 YSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDS 318
             N++ E+         NL  L +  N LR       +    ++ L+++S
Sbjct: 312 SFNHLAEVP----ELPQNLKQLHVEYNPLREFP----DIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 12/140 (8%)

Query: 10  WYRCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLY 69
                        ++  L      ++          ++      +N  S   +       
Sbjct: 225 SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 284

Query: 70  KLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI 129
            L EL +  N L ELP         L  +  S N +  +P         L  + + YN +
Sbjct: 285 SLEELNVSNNKLIELPALPP----RLERLIASFNHLAEVPELPQN----LKQLHVEYNPL 336

Query: 130 ESLPANVFHDLISLEELDLS 149
              P        S+E+L ++
Sbjct: 337 REFPDI----PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 123 QLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP 182
               NA  +   ++     SLEEL++S N L  +     +    L+RL    N + ++P 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP- 320

Query: 183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHL 215
              +  + L  L +  N L    P +    + L
Sbjct: 321 ---ELPQNLKQLHVEYNPLREF-PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 9e-05
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 243 HLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT 302
               N              SLE+L + +N + EL A        L  L  + N L  +  
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVP- 320

Query: 303 KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNL 335
              E   +LK+L ++ N L+    D    + +L
Sbjct: 321 ---ELPQNLKQLHVEYNPLREF-PDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 49/312 (15%), Positives = 85/312 (27%), Gaps = 30/312 (9%)

Query: 47  IRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIK 106
              ++L    LS+L +        L  L    N L+ELP        +L ++ +  N +K
Sbjct: 40  AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQ----SLKSLLVDNNNLK 91

Query: 107 TLP------STFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGT 160
            L               +L  +    N+      +V ++ +             +     
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 161 FSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLEL 220
              +  L+ L   +                L   S+                  LT +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 221 SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAG--------SFANLQSLEKLFLYSNN 272
             N + +L     S        +   +  E   +          F+ L  L     Y N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 273 IQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLL 332
                        +L  L ++NN L  L          L++L    N L  +      L 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVP----ELP 323

Query: 333 PNLITLKLAKNP 344
            NL  L +  NP
Sbjct: 324 QNLKQLHVEYNP 335

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 48  RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKT 107
           RV+ L    L+ L       L  +T L L  N L  LP  L  +   L  +  S N ++ 
Sbjct: 1   RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALEN 57

Query: 108 LPSTFFKGAIRLTVVQLSYNAIESLPA-NVFHDLISLEELDLSQNVLTSIQ 157
           +        ++   + L  N ++   A         L  L+L  N L   +
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 7e-06
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 168 KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISS 227
           + L L    +  L     + L  +  L L +NRL  + P L              +  + 
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVL---QASDNAL 55

Query: 228 LNGDEFSQLTSLKELHLGQNYIETIPA-GSFANLQSLEKLFLYSNNIQEL 276
            N D  + L  L+EL L  N ++   A     +   L  L L  N++ + 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 218 LELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELH 277
           L L+   ++ L      QL  +  L L  N +      + A L+ LE L    N ++ + 
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD 59

Query: 278 AGTFAGLTNLTALFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKL---QYLATDSLSLLP 333
                    L  L L NN L+     +       L  L L  N L   + +      +LP
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 334 NLITL 338
           ++ ++
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 240 KELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRY 299
           + LHL    +  +       L  +  L L  N ++ L     A L  L  L  ++N L  
Sbjct: 1   RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 300 LDTKAFEPMLHLKKLQLDSNKLQYL-ATDSLSLLPNLITLKLAKNPWHCDCAI 351
           +D      +  L++L L +N+LQ   A   L   P L+ L L  N    +  I
Sbjct: 58  VD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 9e-04
 Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 74  LKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLP 133
           L L    L+ L        + ++ +DLS N ++ LP         L V+Q S NA+E++ 
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALENVD 59

Query: 134 ANVFHDLISLEELDLSQNVLTSIQ-YGTFSGMYSLKRLKLQSNRINQLP 181
                  +  +EL L  N L              L  L LQ N + Q  
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 37/177 (20%), Positives = 57/177 (32%), Gaps = 14/177 (7%)

Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
            +  +  + + I+S+       L ++ +L L+ N LT         +  L  LK      
Sbjct: 47  SIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT--------DIKPLANLKNLGWLF 96

Query: 178 NQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLT 237
                                +        +           L        +    S+LT
Sbjct: 97  LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLT 156

Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
            L  L L  N I  I     A L  L+ L+L  N+I +L A   AGL NL  L L +
Sbjct: 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 27/205 (13%), Positives = 71/205 (34%), Gaps = 16/205 (7%)

Query: 66  TGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLS 125
               +  +  L+K  +++   +  ++  ++  +  + + IK++     +    +T + L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 126 YNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIF 185
            N +          L +L+ L         ++  +        +     +       G+ 
Sbjct: 77  GNKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 186 DDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLG 245
              +        N                L+  +   + I        + LT L+ L+L 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLS 186

Query: 246 QNYIETIPAGSFANLQSLEKLFLYS 270
           +N+I  +   + A L++L+ L L+S
Sbjct: 187 KNHISDLR--ALAGLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 18/228 (7%)

Query: 67  GLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSY 126
            L    ++   K+++++   +  +    ++T+      + T+     +    L  ++L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTIEG--VQYLNNLIGLELKD 72

Query: 127 NAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFD 186
           N I  L        I+  EL  +     S   G  S           ++           
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 187 DLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQ 246
            L          + L                  LS       +    + L+ L  L    
Sbjct: 133 VLYLDLNQITNISPL----------AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 247 NYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNN 294
           N I  I     A+L +L ++ L +N I ++     A  +NL  + L N
Sbjct: 183 NKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 37/253 (14%), Positives = 65/253 (25%), Gaps = 29/253 (11%)

Query: 47  IRVIDLGINQLSTLSK--DAFTGLYKLTELKLRKNH-LSELPGKLFISTINLSTMDLSQN 103
           +  +DL    L        +   L  L  L +   + L             L  + ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 104 LIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSG 163
            +      F      L  +  SYNA+          L +L  +    N ++     ++  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 164 MYSL-----------------------KRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNR 200
              L                             S  + +    +                
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 201 LSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSFAN 259
                 G     K+L  L+L  N I        +QL  L  L++  N +   IP     N
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGN 289

Query: 260 LQSLEKLFLYSNN 272
           LQ  +     +N 
Sbjct: 290 LQRFDVSAYANNK 302

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 33/173 (19%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 118 RLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRI 177
           ++T +Q     I+S+       L +L +++ S N          + +  LK L    + +
Sbjct: 41  QVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN--------QLTDITPLKNLTKLVDIL 90

Query: 178 NQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLT 237
                                   +     +           L  +  +  +    S LT
Sbjct: 91  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 150

Query: 238 SLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTAL 290
           SL++L+   N +  +     ANL +LE+L + SN + ++     A LTNL +L
Sbjct: 151 SLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESL 199

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 13/98 (13%)

Query: 187 DLKYLDFLSLRNNRLSFIR-PGLFNYFKHLTFLELSENWISSLN----GDEFSQLTSLKE 241
           D++ LD   ++   LS  R   L    +    + L +  ++               +L E
Sbjct: 3   DIQSLD---IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 242 LHLGQNYI-----ETIPAGSFANLQSLEKLFLYSNNIQ 274
           L+L  N +       +  G       ++KL L +  + 
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 16/140 (11%), Positives = 33/140 (23%), Gaps = 5/140 (3%)

Query: 238 SLKELHLGQNYI-ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFA----GLTNLTALFL 292
            ++ L +    + +   A     LQ  + + L    + E      +        L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 293 NNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAIL 352
            +N L  +        L     ++    LQ              TL+          +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 353 YMARWLRANRRKVWDSKPTC 372
            +         +        
Sbjct: 123 LLGDAGLQLLCEGLLDPQCR 142

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 92  TINLSTMDLSQNLIKTLP-STFFKGAIRLTVVQLSYNAIESLP----ANVFHDLISLEEL 146
           ++++ ++D+    +     +       +  VV+L    +        ++      +L EL
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 147 DLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN 178
           +L  N L  +              K+Q   + 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	404
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.98
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.92
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.88
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.83
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.6
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.99

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=275.16  Aligned_cols=280  Identities=31%  Similarity=0.506  Sum_probs=193.2

Q ss_pred             CCCCceecC-CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291         14 CEGPCRCRP-EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST   92 (404)
Q Consensus        14 ~~~~c~c~~-~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   92 (404)
                      ||..|+|.. ....|.|.+++++.+|..  +|.++++|++++|.|+.+++.+|.++++|++|+++++.+..++...+..+
T Consensus         2 cp~~C~C~~~~~~~v~c~~~~L~~iP~~--ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~   79 (284)
T d1ozna_           2 CPGACVCYNEPKVTTSCPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL   79 (284)
T ss_dssp             CCTTCEEECSSSCEEECCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             cCCCCEEcCCCCeEEEcCCCCCCccCCC--CCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccc
Confidence            789999964 356899999999999975  78888999999988888887778888888888888887777777766666


Q ss_pred             CCCCEEeCCC-CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEe
Q psy12291         93 INLSTMDLSQ-NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLK  171 (404)
Q Consensus        93 ~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  171 (404)
                      ..++.+.+.. +.++.+++..|.                        ++++|+.|++++|.+..+....+....+|+.++
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~------------------------~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~  135 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFH------------------------GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTT------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhhc------------------------ccccCCEEecCCcccccccccccchhcccchhh
Confidence            6666665543 344444444344                        344444444433332222211222222222222


Q ss_pred             ccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc
Q psy12291        172 LQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET  251 (404)
Q Consensus       172 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  251 (404)
                      +++|.++.                                                                        
T Consensus       136 l~~N~l~~------------------------------------------------------------------------  143 (284)
T d1ozna_         136 LQDNALQA------------------------------------------------------------------------  143 (284)
T ss_dssp             CCSSCCCC------------------------------------------------------------------------
T ss_pred             hccccccc------------------------------------------------------------------------
Confidence            22222222                                                                        


Q ss_pred             cCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccC
Q psy12291        252 IPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSL  331 (404)
Q Consensus       252 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  331 (404)
                      ++...|..+++|+.|++++|.++.+++.+|.++++|+++++++|+++.+.+..|..+++|++|++++|++.++++..+..
T Consensus       144 i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccc
Confidence            22222333344445555555555555555666666666677777777666677777888888888888888888888889


Q ss_pred             CCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcccCCCCcCCCC
Q psy12291        332 LPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSVEDMSFDDLCE  393 (404)
Q Consensus       332 l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l~~~~~~~~C~  393 (404)
                      +++|+.|++++|||.|||++.|+..|++......  ...+|+.|..++|+++.+++..++|+
T Consensus       224 ~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~--~~~~C~~p~~l~g~~l~~l~~~~l~g  283 (284)
T d1ozna_         224 LRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSS--SEVPCSLPQRLAGRDLKRLAANDLQG  283 (284)
T ss_dssp             CTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEE--CCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred             ccccCEEEecCCCCCCCccchHHHHHHHhCcCCC--CceEeCCchHHcCCccccCCHHHCCC
Confidence            9999999999999999999999999999865432  47899999999999999999988864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-33  Score=250.43  Aligned_cols=297  Identities=25%  Similarity=0.424  Sum_probs=211.3

Q ss_pred             CCCCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccC
Q psy12291         12 RCCEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIS   91 (404)
Q Consensus        12 ~~~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~   91 (404)
                      +.||..|+|.  ...++|.+.+++++|..  +|.++++|++++|+|+.+++.+|.++++|++|++++|.+..+++..|..
T Consensus         2 ~~~p~~c~c~--~~~~~C~~~~L~~lP~~--l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~   77 (305)
T d1xkua_           2 PVCPFRCQCH--LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP   77 (305)
T ss_dssp             CCCCTTCEEE--TTEEECTTSCCCSCCCS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             CCCCCCCEec--CCEEEecCCCCCccCCC--CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhC
Confidence            4789999994  57799999999999986  7889999999999999999889999999999999999999999888999


Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc--ccccccccCCccCcE
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT--SIQYGTFSGMYSLKR  169 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~l~~l~~L~~  169 (404)
                      +++|++|++++|+++.+|...   ...++.|.+.+|.+..++...+.....+..+....+...  ......+..+++|+.
T Consensus        78 l~~L~~L~l~~n~l~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          78 LVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  154 (305)
T ss_dssp             CTTCCEEECCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCccCEecccCCccCcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCc
Confidence            999999999999999998653   468899999999999888777777778888888777543  333455677778888


Q ss_pred             EeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCC
Q psy12291        170 LKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYI  249 (404)
Q Consensus       170 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  249 (404)
                      +++.+|.+..++...   +++|+.|++.+|......+..+..++.+++|++++|.+..+++.++.++++|++|++++|.+
T Consensus       155 l~l~~n~l~~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L  231 (305)
T d1xkua_         155 IRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  231 (305)
T ss_dssp             EECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             cccccCCccccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc
Confidence            888888777665432   35666777766666655555555555666666665555555555555555555555555555


Q ss_pred             cccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCc--ccCcc
Q psy12291        250 ETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQ--YLATD  327 (404)
Q Consensus       250 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~  327 (404)
                      +.++. .+..+++|+.|+|++|+|+.++...|..                  ...+...++|+.|+|++|.++  .+++.
T Consensus       232 ~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~------------------~~~~~~~~~L~~L~L~~N~~~~~~~~~~  292 (305)
T d1xkua_         232 VKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP------------------PGYNTKKASYSGVSLFSNPVQYWEIQPS  292 (305)
T ss_dssp             SSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSC------------------SSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             ccccc-ccccccCCCEEECCCCccCccChhhccC------------------cchhcccCCCCEEECCCCcCccCcCCHh
Confidence            55543 3444555555555555555544433321                  111233456777777777665  35555


Q ss_pred             cccCCCCCcE
Q psy12291        328 SLSLLPNLIT  337 (404)
Q Consensus       328 ~~~~l~~L~~  337 (404)
                      .+..+.....
T Consensus       293 ~f~~~~~~~~  302 (305)
T d1xkua_         293 TFRCVYVRAA  302 (305)
T ss_dssp             GGTTCCCGGG
T ss_pred             HhcccccCcc
Confidence            5554444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.8e-31  Score=231.30  Aligned_cols=219  Identities=27%  Similarity=0.382  Sum_probs=160.8

Q ss_pred             CCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeE
Q psy12291        115 GAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFL  194 (404)
Q Consensus       115 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L  194 (404)
                      ....+.+++.+++.++.+|....   ++++.|++++|.+..+.+..|.++++|++|++++|.++.++.  +..+      
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l------   76 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTL------   76 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCC------
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccc------
Confidence            34455556666666666655431   356666666666666665566666666666666666555443  2334      


Q ss_pred             ecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCcc
Q psy12291        195 SLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQ  274 (404)
Q Consensus       195 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~  274 (404)
                                        ++|++|++++|.+...+ ..+..+++|+.|+++++.+..++...+..+.+++.|++++|.++
T Consensus        77 ------------------~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          77 ------------------PVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             ------------------TTCCEEECCSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             ------------------ccccccccccccccccc-cccccccccccccccccccceeeccccccccccccccccccccc
Confidence                              44555555555544443 34556677777777777777777767777888888888888888


Q ss_pred             ccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHH
Q psy12291        275 ELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYM  354 (404)
Q Consensus       275 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~  354 (404)
                      .++...+..++.++++++++|+++.++++.|..+++|++|+|++|+|+.++.+ +..+++|+.|+|+||||.|||.+.||
T Consensus       138 ~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-~~~~~~L~~L~L~~Np~~CdC~~~~l  216 (266)
T d1p9ag_         138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWLCNCEILYF  216 (266)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBCCSGGGHHH
T ss_pred             eeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChh-HCCCCCCCEEEecCCCCCCCcchHHH
Confidence            88888888888999999999999988888888999999999999999988765 45689999999999999999999999


Q ss_pred             HHHHHhccCc
Q psy12291        355 ARWLRANRRK  364 (404)
Q Consensus       355 ~~~~~~~~~~  364 (404)
                      .+|+++....
T Consensus       217 ~~wl~~~~~~  226 (266)
T d1p9ag_         217 RRWLQDNAEN  226 (266)
T ss_dssp             HHHHHHTGGG
T ss_pred             HHHHHhcccc
Confidence            9999876543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=7.7e-29  Score=220.54  Aligned_cols=268  Identities=26%  Similarity=0.378  Sum_probs=161.7

Q ss_pred             eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCC
Q psy12291         48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN  127 (404)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  127 (404)
                      ++++-++..++.++.. +.  +++++|++++|+|++++...|.++++|++|++++|.+..+++..|.++++|++|++++|
T Consensus        13 ~~~~C~~~~L~~lP~~-l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          13 RVVQCSDLGLEKVPKD-LP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TEEECTTSCCCSCCCS-CC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCccCCC-CC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            3445555555554332 21  34555555555555555555555555555555555555555545555555555555555


Q ss_pred             CCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCC
Q psy12291        128 AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG  207 (404)
Q Consensus       128 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  207 (404)
                      +++.++...   ...++.|++..|.+..+....+.....+..+....+....                      ......
T Consensus        90 ~l~~l~~~~---~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~----------------------~~~~~~  144 (305)
T d1xkua_          90 QLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENG  144 (305)
T ss_dssp             CCSBCCSSC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTT
T ss_pred             ccCcCccch---hhhhhhhhccccchhhhhhhhhhccccccccccccccccc----------------------cCCCcc
Confidence            555554432   2344555555555544444444444444444443332211                      112223


Q ss_pred             ccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCC
Q psy12291        208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL  287 (404)
Q Consensus       208 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  287 (404)
                      .+..+++|+.+++++|.+..++..   .+++|++|++++|.........+..++.++.|++++|.++.+++..+.++++|
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             ccccccccCccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc
Confidence            345556666666666666555422   24567777777777776666667777777788887787777777777777888


Q ss_pred             CeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcccc------cCCCCCcEEEccCCcccc
Q psy12291        288 TALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSL------SLLPNLITLKLAKNPWHC  347 (404)
Q Consensus       288 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~l~l~~Np~~C  347 (404)
                      ++|+|++|+++.++ ..+..+++|++|+|++|+|+.++...+      ...++|+.+++++|||.+
T Consensus       222 ~~L~L~~N~L~~lp-~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         222 RELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CEEECCSSCCSSCC-TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             eeeecccccccccc-cccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            88888888887774 467777888888888888887766544      346789999999999965

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=8.3e-29  Score=227.64  Aligned_cols=297  Identities=26%  Similarity=0.393  Sum_probs=197.5

Q ss_pred             CceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCC
Q psy12291         24 IHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQN  103 (404)
Q Consensus        24 ~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n  103 (404)
                      .+.++..+++++.+... ....++++|++++|+|+.+.  .|.++++|++|++++|.+.++++  +..+++|+.|+++++
T Consensus        46 l~~L~l~~~~I~~l~gl-~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~  120 (384)
T d2omza2          46 VTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN  120 (384)
T ss_dssp             CCEEECCSSCCCCCTTG-GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CCEEECCCCCCCCcccc-ccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc--ccccccccccccccc
Confidence            44555555555554321 12335566666666555553  25555556666666655555443  345555666665555


Q ss_pred             CCcccCccccCCCCCCcEEEccCCCCCc-----------------------------------------CCCccCCCCCC
Q psy12291        104 LIKTLPSTFFKGAIRLTVVQLSYNAIES-----------------------------------------LPANVFHDLIS  142 (404)
Q Consensus       104 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------------------------------~~~~~~~~l~~  142 (404)
                      .++.++..  .....+..+....+.+..                                         .....+..+++
T Consensus       121 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (384)
T d2omza2         121 QITDIDPL--KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN  198 (384)
T ss_dssp             CCCCCGGG--TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred             cccccccc--cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccc
Confidence            55443321  112222222221111100                                         00112345667


Q ss_pred             CCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCC
Q psy12291        143 LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSE  222 (404)
Q Consensus       143 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  222 (404)
                      ++.+++++|.+..+.+  +...++|++|++++|.++.++  .+..+++|+.+++++|.++.+.+  +..+++|+++++++
T Consensus       199 ~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~  272 (384)
T d2omza2         199 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  272 (384)
T ss_dssp             CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             cceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeeccC
Confidence            7888888887776653  345668888888888887764  35677888888888888876643  67778888888888


Q ss_pred             CcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCc
Q psy12291        223 NWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDT  302 (404)
Q Consensus       223 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  302 (404)
                      +.+..++  .+..++.++.+.+..+.+..+..  +..+++++.|++++|.++++.+  +..+++|++|++++|+++.++ 
T Consensus       273 ~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~~--~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~-  345 (384)
T d2omza2         273 NQISNIS--PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS-  345 (384)
T ss_dssp             SCCCCCG--GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred             cccCCCC--ccccccccccccccccccccccc--cchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh-
Confidence            8887665  36677888888888888877653  6678889999999999988753  778899999999999988774 


Q ss_pred             cccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCC
Q psy12291        303 KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKN  343 (404)
Q Consensus       303 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~N  343 (404)
                       .+..+++|++|++++|+++++++  +..+++|+.|+|++|
T Consensus       346 -~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         346 -SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             -GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             -hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence             47788999999999999998865  788899999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.1e-26  Score=213.30  Aligned_cols=277  Identities=26%  Similarity=0.373  Sum_probs=225.3

Q ss_pred             CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      +..+.+++.++.++.+|... ...++++|++++|.+..+.  .+.++++|+.|+++++.+..+....  ....+..+...
T Consensus        66 ~nL~~L~Ls~N~l~~l~~l~-~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~--~~~~~~~~~~~  140 (384)
T d2omza2          66 NNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELS  140 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGT--TCTTCSEEEEE
T ss_pred             CCCCEEeCcCCcCCCCcccc-CCccccccccccccccccc--ccccccccccccccccccccccccc--ccccccccccc
Confidence            45889999999999998533 3468999999999998875  4899999999999999887655432  22233333322


Q ss_pred             CCCCcc-----------------------------------------cCccccCCCCCCcEEEccCCCCCcCCCccCCCC
Q psy12291        102 QNLIKT-----------------------------------------LPSTFFKGAIRLTVVQLSYNAIESLPANVFHDL  140 (404)
Q Consensus       102 ~n~l~~-----------------------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  140 (404)
                      .+.+..                                         .....+..+++++.+++++|.++.+.+  +...
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~  218 (384)
T d2omza2         141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGIL  218 (384)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred             cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--cccc
Confidence            211100                                         011235567899999999999988765  3557


Q ss_pred             CCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEEC
Q psy12291        141 ISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLEL  220 (404)
Q Consensus       141 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  220 (404)
                      ++|+.|++++|.+..++  .+..+++|+.|++++|.++++++  +..+++|++|+++++.+..+.+  +..++.++.+.+
T Consensus       219 ~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~  292 (384)
T d2omza2         219 TNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL  292 (384)
T ss_dssp             TTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--cccccccccccc
Confidence            89999999999988764  57788999999999999998765  6888999999999999887643  778899999999


Q ss_pred             CCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccccccccc
Q psy12291        221 SENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYL  300 (404)
Q Consensus       221 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~  300 (404)
                      ..+.+..+.  .+..+++++.|++++|.+.++++  +..+++|++|++++|.+++++  .++++++|++|++++|+++.+
T Consensus       293 ~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         293 NENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             CSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBC
T ss_pred             ccccccccc--ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCC
Confidence            999988764  47788999999999999998864  788999999999999999876  488999999999999999988


Q ss_pred             CccccCCCCCCcEEeCCCC
Q psy12291        301 DTKAFEPMLHLKKLQLDSN  319 (404)
Q Consensus       301 ~~~~~~~l~~L~~L~l~~n  319 (404)
                      .+  +.++++|+.|+|++|
T Consensus       367 ~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         367 TP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GG--GTTCTTCSEEECCCE
T ss_pred             hh--hccCCCCCEeeCCCC
Confidence            64  788999999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-26  Score=199.92  Aligned_cols=205  Identities=31%  Similarity=0.417  Sum_probs=169.4

Q ss_pred             CCceecC--CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCC
Q psy12291         16 GPCRCRP--EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTI   93 (404)
Q Consensus        16 ~~c~c~~--~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~   93 (404)
                      +.|+|..  ....|+|.+++++.+|..  +|.++++|++++|.|+.+.+.+|.++++|++|++++|+|+.++.  +..++
T Consensus         2 ~~C~~~~~~~~~~v~C~~~~L~~iP~~--lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~   77 (266)
T d1p9ag_           2 PICEVSKVASHLEVNCDKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLP   77 (266)
T ss_dssp             CSSEEECSTTCCEEECTTSCCSSCCSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCT
T ss_pred             CccEEcccCCCeEEEccCCCCCeeCcC--cCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccc
Confidence            3577754  456799999999999976  78899999999999999998999999999999999999998875  46789


Q ss_pred             CCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEecc
Q psy12291         94 NLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQ  173 (404)
Q Consensus        94 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  173 (404)
                      +|++|++++|+++.++.. +.++++|+.|+++++.+..++...+..+.+++.|++++|.+..+.+..+..+++++.++++
T Consensus        78 ~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccccccc-cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            999999999999887664 7788999999999998888888778888888888888888888877777778888888888


Q ss_pred             CCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291        174 SNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS  226 (404)
Q Consensus       174 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  226 (404)
                      +|+++.+++..|..+++|++|++++|+++.++.. +..+++|+.|++++|.+.
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG-FFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCCCSEEECCSCCBC
T ss_pred             cccccccCccccccccccceeecccCCCcccChh-HCCCCCCCEEEecCCCCC
Confidence            8888888877777788888888888877765433 445666777777766554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.94  E-value=5.8e-26  Score=202.46  Aligned_cols=260  Identities=20%  Similarity=0.230  Sum_probs=163.8

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCccc--ChhhcCCCCCCCEEEccC-CcCc-ccCcccccCCCCCCEE
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTL--SKDAFTGLYKLTELKLRK-NHLS-ELPGKLFISTINLSTM   98 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~-~~l~-~~~~~~~~~~~~L~~L   98 (404)
                      .+.+|.|...+         ....++.|+++++++...  .+..+.++++|++|+|++ |++. .+|.. |.++++|++|
T Consensus        37 ~w~gv~C~~~~---------~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L  106 (313)
T d1ogqa_          37 TWLGVLCDTDT---------QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYL  106 (313)
T ss_dssp             CSTTEEECCSS---------SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEE
T ss_pred             cCCCeEEeCCC---------CcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchh
Confidence            37789997421         223699999999988753  346788899999999986 6776 56544 6788888888


Q ss_pred             eCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccC-cEEeccCCCC
Q psy12291         99 DLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSL-KRLKLQSNRI  177 (404)
Q Consensus        99 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L-~~L~l~~~~l  177 (404)
                      ++++|++..+++..+..+.+|+.+++++|.+....+..+..++.++.+++++|.+....+..+..+..+ +.+++++|++
T Consensus       107 ~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             hhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence            888888888777777788888888888887766555556777778888888777765555555555554 6677777766


Q ss_pred             CCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc-ccCccc
Q psy12291        178 NQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGS  256 (404)
Q Consensus       178 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~  256 (404)
                      ++..+..+..+. ...+++..+......+..+..+++++.++++++.+...++ .+..+++|+.|++++|+++ .+|. .
T Consensus       187 ~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~-~  263 (313)
T d1ogqa_         187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQ-G  263 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCG-G
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCCh-H
Confidence            665555554443 3356666665555555555555566666666555544332 3444555555555555555 2332 3


Q ss_pred             ccCCCCCcEEECcCCCccccccccccCCCCCCeeeccccc
Q psy12291        257 FANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL  296 (404)
Q Consensus       257 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  296 (404)
                      +..+++|++|+|++|++++..+ .++.+++|+.+++++|+
T Consensus       264 l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             HhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCc
Confidence            4555555555555555552111 13344445555554443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=1.2e-25  Score=185.27  Aligned_cols=177  Identities=25%  Similarity=0.475  Sum_probs=154.1

Q ss_pred             CCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcc-cCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecc
Q psy12291        215 LTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIET-IPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLN  293 (404)
Q Consensus       215 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~  293 (404)
                      .++++.+++.++.+|.. +  .+++++|++++|.++. ++...|..+++|+.|++++|.+..+....|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~-l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCC-C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            34677777777777642 2  2578899999999875 566678889999999999999999999999999999999999


Q ss_pred             cccccccCccccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeC
Q psy12291        294 NNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCR  373 (404)
Q Consensus       294 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~  373 (404)
                      +|+++.+++.+|.++++|++|+|++|+|+.++++.+..+++|++++|++|||.|+|.+.|+..|++.....  ....+|+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~--~~~~~c~  164 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN--GGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCS--GGGCBBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhccc--CCCeEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999876432  2478999


Q ss_pred             CCCCCCCCcccCCCCcCC-CCccc
Q psy12291        374 GPGNLGGKSVEDMSFDDL-CEGQW  396 (404)
Q Consensus       374 ~p~~l~~~~l~~~~~~~~-C~~~~  396 (404)
                      .|+.++|..+.++...++ |...-
T Consensus       165 ~p~~l~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         165 APSKVRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             SSTTTTTSBGGGSCTTTCCCCCC-
T ss_pred             CChhhcCCEeeecCHhhCcCCCCC
Confidence            999999999999999887 86653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.7e-25  Score=198.13  Aligned_cols=245  Identities=20%  Similarity=0.197  Sum_probs=205.7

Q ss_pred             CceEEecCCCCC---ccCCCCCCCCCeeEEEcCC-CCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEe
Q psy12291         24 IHTLSCWKQDME---ELPFDQIIPVDIRVIDLGI-NQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMD   99 (404)
Q Consensus        24 ~~~~~~~~~~l~---~ip~~~~~~~~l~~L~l~~-~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~   99 (404)
                      +..++..+.++.   .+|.......++++|++++ |++.+..+..|.++++|++|++++|++.++++..+..+..|++++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            567888888887   4677665667899999987 788755567799999999999999999999888889999999999


Q ss_pred             CCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCC-CCEEECCCCcccccccccccCCccCcEEeccCCCCC
Q psy12291        100 LSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLIS-LEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRIN  178 (404)
Q Consensus       100 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~  178 (404)
                      +++|.+....+..+.++++++.+++++|.+....+..+..+.. ++.+++++|.+....+..+..+. ...+++..+...
T Consensus       132 l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~  210 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             cccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence            9999877655556889999999999999998544444455555 48999999999888777777664 457999988887


Q ss_pred             CCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCc-ccCcccc
Q psy12291        179 QLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIE-TIPAGSF  257 (404)
Q Consensus       179 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~  257 (404)
                      ...+..+..+++++.+++.++.+....+ .+..+++++.|++++|.+.+..|..+.++++|++|++++|+++ .+|.  +
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~  287 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--G  287 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--S
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC--c
Confidence            7777778889999999999999876644 5788899999999999999666678999999999999999998 5653  5


Q ss_pred             cCCCCCcEEECcCCC
Q psy12291        258 ANLQSLEKLFLYSNN  272 (404)
Q Consensus       258 ~~l~~L~~L~L~~n~  272 (404)
                      ..+++|+.+++++|+
T Consensus       288 ~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         288 GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTGGGSCGGGTCSSS
T ss_pred             ccCCCCCHHHhCCCc
Confidence            778999999999997

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3e-24  Score=184.02  Aligned_cols=223  Identities=20%  Similarity=0.316  Sum_probs=159.7

Q ss_pred             CCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCc-ccCcccccCCC
Q psy12291         15 EGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLS-ELPGKLFISTI   93 (404)
Q Consensus        15 ~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~   93 (404)
                      ...|.|..  +.++|.+.+++.+|..  ++.++++|++++|.|+.++..+|.++++|++|++++|.+. .++...|..++
T Consensus         3 ~~~C~C~~--~~i~c~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~   78 (242)
T d1xwdc1           3 HRICHCSN--RVFLCQESKVTEIPSD--LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP   78 (242)
T ss_dssp             CSSEEECS--SEEEEESCSCSSCCSC--SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCT
T ss_pred             CCcCCCcC--CEEEEeCCCCCCcCCC--CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccc
Confidence            45699974  6899999999999976  6789999999999999999889999999999999999876 47788889999


Q ss_pred             CCCEEeCCC-CCCcccCccccCCCCCCcEEEccCCCCCcCCCc-cCCCCCCCCEEECCCCcccccccccccCCc-cCcEE
Q psy12291         94 NLSTMDLSQ-NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPAN-VFHDLISLEELDLSQNVLTSIQYGTFSGMY-SLKRL  170 (404)
Q Consensus        94 ~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~-~L~~L  170 (404)
                      .++++.+.. +.+..+++..|.++++|++++++++.+...+.. .+..+..+..+...++.+..+....|.+++ .++.|
T Consensus        79 ~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L  158 (242)
T d1xwdc1          79 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL  158 (242)
T ss_dssp             TCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceee
Confidence            999999875 578888888899999999999999988876542 223344555555666677777666666554 67777


Q ss_pred             eccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcE
Q psy12291        171 KLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKE  241 (404)
Q Consensus       171 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  241 (404)
                      ++.+|.++.++...|....-.+.+.+.+|.++.+++..|..+++|++|++++|.+..++...|.++++|+.
T Consensus       159 ~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  229 (242)
T d1xwdc1         159 WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA  229 (242)
T ss_dssp             ECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred             ecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence            77777777766655443222223334555555555545555555555555555555554444444443333

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.9e-23  Score=162.18  Aligned_cols=145  Identities=26%  Similarity=0.410  Sum_probs=128.3

Q ss_pred             CCCcEEECCCCCCcccCcccccCCCCCcEEECcCC-CccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEe
Q psy12291        237 TSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSN-NIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQ  315 (404)
Q Consensus       237 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  315 (404)
                      ...+.++++++++.+++. .+..+++|+.|++++| .++.++..+|.++++|+.|++++|+|+.+++.+|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~~~p~-~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCCTTTT-TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCccCcc-cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            345668888888888776 4677899999999866 59999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccCcccccCCCCCcEEEccCCccccccCcHHHHHHHHhccCcccCCCCeeCCCCCCCCCcc
Q psy12291        316 LDSNKLQYLATDSLSLLPNLITLKLAKNPWHCDCAILYMARWLRANRRKVWDSKPTCRGPGNLGGKSV  383 (404)
Q Consensus       316 l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~~C~c~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~~~~l  383 (404)
                      |++|+++.++.+.+... +|+.|+|++|||.|||.+.|+..|+......+.+...+|.+|..++|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~  153 (156)
T d2ifga3          87 LSFNALESLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPN  153 (156)
T ss_dssp             CCSSCCSCCCSTTTCSC-CCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCC
T ss_pred             ccCCCCcccChhhhccc-cccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCc
Confidence            99999999999877655 69999999999999999999999998877666666899999999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.3e-22  Score=173.44  Aligned_cols=204  Identities=28%  Similarity=0.383  Sum_probs=162.4

Q ss_pred             CCceEEecCCCCCccCCCCC-CCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEcc-CCcCcccCcccccCCCCCCEEeC
Q psy12291         23 EIHTLSCWKQDMEELPFDQI-IPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLR-KNHLSELPGKLFISTINLSTMDL  100 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~-~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~-~~~l~~~~~~~~~~~~~L~~L~l  100 (404)
                      ..+.++.++++++.+|...+ ...++++|++++|.+..+....+.++..++.+... .+.+..++...|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            46789999999999997643 34579999999999999999999999999999875 56888999999999999999999


Q ss_pred             CCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCC
Q psy12291        101 SQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQL  180 (404)
Q Consensus       101 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~  180 (404)
                      ++|.+..++...+..+.+|+.+++++|.++.++...|..+++|+.|++++|.+..+.+.+|.++++|+.+++.+|.++.+
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            99999888887788888999999999988888887777777888888888877777777777777777777777777776


Q ss_pred             CCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCC
Q psy12291        181 PPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWIS  226 (404)
Q Consensus       181 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  226 (404)
                      .+..|..+++|++|++++|.+..+.+..+..+++|++|++++|.+.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            6666666666666666666666655555555555666665555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=4.3e-23  Score=169.81  Aligned_cols=138  Identities=28%  Similarity=0.498  Sum_probs=128.6

Q ss_pred             CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcc-cChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291         14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLST-LSKDAFTGLYKLTELKLRKNHLSELPGKLFIST   92 (404)
Q Consensus        14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   92 (404)
                      ||..|.|..  ..|+|++++++.||.+  +|.++++|++++|.|+. +....|.++++|+.|++++|.+..++...|..+
T Consensus         2 CP~~C~C~~--~~v~Cs~~~L~~iP~~--lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~   77 (192)
T d1w8aa_           2 CPAMCHCEG--TTVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             CCTTSEEET--TEEECTTSCCSSCCSC--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             cCCCCEEcC--CEEEEeCCCcCccCCC--CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc
Confidence            799999974  6899999999999987  78899999999999975 667788999999999999999999999999999


Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccc
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTS  155 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~  155 (404)
                      ++|++|++++|+++.+++.+|.++++|++|+|++|.++.++++.|..+++|++|++++|++..
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999998764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.88  E-value=2e-19  Score=162.30  Aligned_cols=283  Identities=24%  Similarity=0.285  Sum_probs=177.7

Q ss_pred             CCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCC
Q psy12291         23 EIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQ  102 (404)
Q Consensus        23 ~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  102 (404)
                      ....+++.+++++.+|.   .++++++|++++|+|+.++.    .+.+|+.|++++|+++.++.-    .+.|++|++++
T Consensus        39 ~l~~LdLs~~~L~~lp~---~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCCCS---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCCCCC---CCCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhhh----ccccccccccc
Confidence            46789999999999995   56789999999999998853    246899999999999988641    35699999999


Q ss_pred             CCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCC
Q psy12291        103 NLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPP  182 (404)
Q Consensus       103 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~  182 (404)
                      |.+..+|.  +..+++|++|++.++.+...+..    ...+..+.+..+.....  ..+..++.++.+.+.++.....+.
T Consensus       108 n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~~~~  179 (353)
T d1jl5a_         108 NQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPD  179 (353)
T ss_dssp             SCCSSCCC--CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCCC
T ss_pred             cccccccc--hhhhccceeeccccccccccccc----cccccchhhcccccccc--ccccccccceeccccccccccccc
Confidence            99999986  67899999999999988765542    34677777766544332  345666778888887776655443


Q ss_pred             CccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCccc------
Q psy12291        183 GIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGS------  256 (404)
Q Consensus       183 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~------  256 (404)
                      ..    ...+.+...+..+...+  .+..++.++.++++++.....+    ....++..+.+..+.+...+...      
T Consensus       180 ~~----~~~~~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  249 (353)
T d1jl5a_         180 LP----LSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPELPQSLTFL  249 (353)
T ss_dssp             CC----TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred             cc----ccccccccccccccccc--cccccccccccccccccccccc----ccccccccccccccccccccccccccccc
Confidence            21    22334444444333322  2344556666666665544332    11233444444444433322100      


Q ss_pred             ---------ccC-CCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCc
Q psy12291        257 ---------FAN-LQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLAT  326 (404)
Q Consensus       257 ---------~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  326 (404)
                               +.. .......++..+.+..+    ...+++|++|++++|+++.++.    .+++|+.|++++|+++.++.
T Consensus       250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~  321 (353)
T d1jl5a_         250 DVSENIFSGLSELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE  321 (353)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccccccccccchhcccccccCccccc----cccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc
Confidence                     000 01222333333333332    1234677777777777776643    24677777777777776653


Q ss_pred             ccccCCCCCcEEEccCCccc
Q psy12291        327 DSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       327 ~~~~~l~~L~~l~l~~Np~~  346 (404)
                          .+++|++|++++|++.
T Consensus       322 ----~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         322 ----LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             ----CCTTCCEEECCSSCCS
T ss_pred             ----ccCCCCEEECcCCcCC
Confidence                2456777777777763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-21  Score=167.05  Aligned_cols=217  Identities=21%  Similarity=0.278  Sum_probs=104.9

Q ss_pred             EEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCc-CCCccCCCCCCCCEEECCC-
Q psy12291         73 ELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIES-LPANVFHDLISLEELDLSQ-  150 (404)
Q Consensus        73 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~-  150 (404)
                      .++.++..++.+|...+   +++++|++++|.++.++...|.++++|++|++++|.+.. ++...|.+++.++.+.+.. 
T Consensus        12 ~i~c~~~~l~~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCSSCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCCCcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            44445555555554432   345555555555555555555555566666665555443 3444455555555555432 


Q ss_pred             CcccccccccccCCccCcEEeccCCCCCCCCCCc-cCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC
Q psy12291        151 NVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGI-FDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN  229 (404)
Q Consensus       151 ~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  229 (404)
                      +.+....+..|.++++|+++++.++.+...+... +..+..+..+...++.+..+....+..++                
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~----------------  152 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----------------  152 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB----------------
T ss_pred             ccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc----------------
Confidence            3455555555566666666666666555443311 11222222233333333333333222221                


Q ss_pred             hhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEE-ECcCCCccccccccccCCCCCCeeecccccccccCccccCCC
Q psy12291        230 GDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKL-FLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPM  308 (404)
Q Consensus       230 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l  308 (404)
                             ..++.|++++|++..++...+. .++++.+ .+.+|.++.++...|.++++|++|++++|+++.++...|..+
T Consensus       153 -------~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         153 -------FESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             -------SSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             -------ccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence                   1344455555555544443332 2333322 344455555555555555555555555555555555555555


Q ss_pred             CCCcEEeC
Q psy12291        309 LHLKKLQL  316 (404)
Q Consensus       309 ~~L~~L~l  316 (404)
                      ++|+.+++
T Consensus       225 ~~L~~l~~  232 (242)
T d1xwdc1         225 KKLRARST  232 (242)
T ss_dssp             CEEESSSE
T ss_pred             cccccCcC
Confidence            55544443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=2e-20  Score=158.06  Aligned_cols=94  Identities=22%  Similarity=0.306  Sum_probs=45.3

Q ss_pred             EccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc
Q psy12291         75 KLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT  154 (404)
Q Consensus        75 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~  154 (404)
                      +++.+.+.++..  +..+.+|++|++.+|.++.++.  +..+++|++|++++|.++.+.+  +..+++++.+++++|.++
T Consensus        25 ~l~~~~~~d~~~--~~~l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCCcCC--HHHcCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            444444443321  2344556666666666555532  4555555555555555554433  344555555555555444


Q ss_pred             ccccccccCCccCcEEeccCCC
Q psy12291        155 SIQYGTFSGMYSLKRLKLQSNR  176 (404)
Q Consensus       155 ~~~~~~l~~l~~L~~L~l~~~~  176 (404)
                      .+.  .+.++++|+.+.++++.
T Consensus        99 ~i~--~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          99 NVS--AIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             CCG--GGTTCTTCCEEECTTSC
T ss_pred             ccc--ccccccccccccccccc
Confidence            332  23344444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=5.4e-20  Score=155.37  Aligned_cols=204  Identities=26%  Similarity=0.394  Sum_probs=138.0

Q ss_pred             eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCC
Q psy12291         48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN  127 (404)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  127 (404)
                      ..++++.+.+.+..  .++.+.+|+.|++.+|+|++++.  +..+++|++|++++|.+..+.+  +..+++++.+++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcchh--HhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            44566666666543  35667889999999999998853  6889999999999999988775  889999999999999


Q ss_pred             CCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCC
Q psy12291        128 AIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPG  207 (404)
Q Consensus       128 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  207 (404)
                      .++.++.  +..+++|+.+.++++......  .+...+.++.+.++++.+....+  +...++|+.|.+++|.+....  
T Consensus        96 ~~~~i~~--l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~--  167 (227)
T d1h6ua2          96 PLKNVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT--  167 (227)
T ss_dssp             CCSCCGG--GTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--
T ss_pred             ccccccc--ccccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch--
Confidence            9988764  678899999999988766543  34556677777777766654332  344555666666555544321  


Q ss_pred             ccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCC
Q psy12291        208 LFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNL  287 (404)
Q Consensus       208 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L  287 (404)
                                              .+.++++|+.|++++|.+..++.  +..+++|++|++++|+++++++  +.++++|
T Consensus       168 ------------------------~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L  219 (227)
T d1h6ua2         168 ------------------------PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL  219 (227)
T ss_dssp             ------------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTC
T ss_pred             ------------------------hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCC
Confidence                                    23444555555555555554432  4455555555555555555542  4555666


Q ss_pred             Ceeecc
Q psy12291        288 TALFLN  293 (404)
Q Consensus       288 ~~L~l~  293 (404)
                      ++|+++
T Consensus       220 ~~L~ls  225 (227)
T d1h6ua2         220 FIVTLT  225 (227)
T ss_dssp             CEEEEE
T ss_pred             CEEEee
Confidence            666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.83  E-value=1.9e-17  Score=149.00  Aligned_cols=279  Identities=25%  Similarity=0.328  Sum_probs=192.3

Q ss_pred             CCCceEEecCCCCCccCCCCCCCCCeeEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCC
Q psy12291         22 PEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLS  101 (404)
Q Consensus        22 ~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~  101 (404)
                      +..+.+++++++++.+|.   .+.+++.|++++|.++.+..  +  .+.|++|++++|.+..++.  +..+++|++|+++
T Consensus        58 ~~L~~L~Ls~N~l~~lp~---~~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~  128 (353)
T d1jl5a_          58 PHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVD  128 (353)
T ss_dssp             TTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECC
T ss_pred             CCCCEEECCCCCCccccc---chhhhhhhhhhhcccchhhh--h--ccccccccccccccccccc--hhhhccceeeccc
Confidence            467899999999999986   45689999999999987742  2  2469999999999999985  4679999999999


Q ss_pred             CCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCC
Q psy12291        102 QNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLP  181 (404)
Q Consensus       102 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~  181 (404)
                      ++.+...+..    ...+..+.+..+.......  +..++.++.+.++++........    ....+.+...+..+..++
T Consensus       129 ~~~~~~~~~~----~~~l~~l~~~~~~~~~~~~--l~~l~~l~~L~l~~n~~~~~~~~----~~~~~~l~~~~~~~~~~~  198 (353)
T d1jl5a_         129 NNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP  198 (353)
T ss_dssp             SSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC
T ss_pred             cccccccccc----cccccchhhcccccccccc--ccccccceecccccccccccccc----cccccccccccccccccc
Confidence            9988876642    4567778777766554333  56677888888888776544321    123455555555555544


Q ss_pred             CCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChh---------------hhcCC-CCCcEEECC
Q psy12291        182 PGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGD---------------EFSQL-TSLKELHLG  245 (404)
Q Consensus       182 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------------~~~~l-~~L~~L~l~  245 (404)
                      .  +..++.++.+.++++......    ....++..+.+..+.+......               .+..+ ......++.
T Consensus       199 ~--~~~l~~L~~l~l~~n~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~  272 (353)
T d1jl5a_         199 E--LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS  272 (353)
T ss_dssp             C--CTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECC
T ss_pred             c--ccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccchhcccccc
Confidence            3  355677777777776654332    2234556666666555433210               00001 123344444


Q ss_pred             CCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccC
Q psy12291        246 QNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLA  325 (404)
Q Consensus       246 ~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~  325 (404)
                      .+.+..++    ..+++|++|++++|+++.++.    .+++|+.|++++|+|+.++.    .+++|++|++++|+++.++
T Consensus       273 ~~~~~~~~----~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         273 SNEIRSLC----DLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             SSCCSEEC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC
T ss_pred             cCcccccc----ccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcCCCCC
Confidence            44444433    246899999999999998863    46899999999999998853    3568999999999999886


Q ss_pred             cccccCCCCCcEEEcc
Q psy12291        326 TDSLSLLPNLITLKLA  341 (404)
Q Consensus       326 ~~~~~~l~~L~~l~l~  341 (404)
                      . .   ..+|+.|.+.
T Consensus       341 ~-~---~~~L~~L~~~  352 (353)
T d1jl5a_         341 D-I---PESVEDLRMN  352 (353)
T ss_dssp             C-C---CTTCCEEECC
T ss_pred             c-c---ccccCeeECc
Confidence            4 1   2467777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.6e-18  Score=142.94  Aligned_cols=160  Identities=28%  Similarity=0.413  Sum_probs=95.8

Q ss_pred             ccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEEC
Q psy12291        165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL  244 (404)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  244 (404)
                      .++++|+++++.+..+..  +..+++|++|++++|+++.+.+  +..+++|++|++++|.+..++  .+.++++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccc
Confidence            345555555555544432  3445555555555555554432  455556666666666555543  3556666666666


Q ss_pred             CCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCccc
Q psy12291        245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYL  324 (404)
Q Consensus       245 ~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  324 (404)
                      +++....++.  +..+++|+.|++++|.+..++  .+..+++|++|++.+|+++.++  .+..+++|++|++++|+++++
T Consensus       114 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         114 FNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC
T ss_pred             cccccccccc--cchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCC
Confidence            6666555432  556667777777777666553  3566677777777777776653  356677777777777777766


Q ss_pred             CcccccCCCCCcEE
Q psy12291        325 ATDSLSLLPNLITL  338 (404)
Q Consensus       325 ~~~~~~~l~~L~~l  338 (404)
                      +  .+..+++|+.|
T Consensus       188 ~--~l~~L~~L~~L  199 (199)
T d2omxa2         188 S--VLAKLTNLESL  199 (199)
T ss_dssp             G--GGGGCTTCSEE
T ss_pred             c--cccCCCCCCcC
Confidence            4  25666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.6e-18  Score=142.84  Aligned_cols=59  Identities=17%  Similarity=0.267  Sum_probs=26.5

Q ss_pred             CCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCccc
Q psy12291         92 TINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLT  154 (404)
Q Consensus        92 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~  154 (404)
                      +.++++|+++++.++.++.  ++.+++|++|++++|.++.+++  +.++++|++|++++|.+.
T Consensus        39 l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             hcCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            3445555555555544432  3344444444444444444332  334444444444444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.7e-18  Score=143.92  Aligned_cols=164  Identities=29%  Similarity=0.415  Sum_probs=97.5

Q ss_pred             ccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEEC
Q psy12291        165 YSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHL  244 (404)
Q Consensus       165 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  244 (404)
                      .+|++|+++++.+..+..  +..+++|++|++++|+++.+.+  +..+++|++|++++|.++.++  .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc--ccccccccccccc
Confidence            345555555555554432  3445555555555555554432  345556666666666555543  3555666666666


Q ss_pred             CCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCccc
Q psy12291        245 GQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYL  324 (404)
Q Consensus       245 ~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  324 (404)
                      +++.+..++.  +..++.++.+++++|.+++..  .+..+++|+++++++|+++.+.+  +..+++|++|++++|+++++
T Consensus       120 ~~~~~~~~~~--l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l  193 (210)
T d1h6ta2         120 EHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (210)
T ss_dssp             TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             cccccccccc--ccccccccccccccccccccc--ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCC
Confidence            6666655442  555666667776666666543  24456677777777777666532  56667777777777777766


Q ss_pred             CcccccCCCCCcEEEccC
Q psy12291        325 ATDSLSLLPNLITLKLAK  342 (404)
Q Consensus       325 ~~~~~~~l~~L~~l~l~~  342 (404)
                      +  .+..+++|+.|+|++
T Consensus       194 ~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 R--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G--GGTTCTTCSEEEEEE
T ss_pred             h--hhcCCCCCCEEEccC
Confidence            4  366677777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=3e-18  Score=142.47  Aligned_cols=164  Identities=32%  Similarity=0.439  Sum_probs=86.2

Q ss_pred             CCCCcEEEccCCCCCcCCCccCCCCCCCCEEECCCCcccccccccccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEe
Q psy12291        116 AIRLTVVQLSYNAIESLPANVFHDLISLEELDLSQNVLTSIQYGTFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLS  195 (404)
Q Consensus       116 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~  195 (404)
                      +.+|+.|+++++.++.+.+  +..+++|++|++++|.++.+.  .++.+++|+.|++++|.++.++.  +..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccccc--ccccccccccc
Confidence            3456666666666555543  344555666666655555443  23445555555555555554432  34444455555


Q ss_pred             cCCCcCcccCCCccCCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccc
Q psy12291        196 LRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQE  275 (404)
Q Consensus       196 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~  275 (404)
                      +.++                        .+..+.  .+..+++++.+++++|.+.....  +..+++|+.+++++|.+++
T Consensus       119 l~~~------------------------~~~~~~--~l~~l~~l~~l~~~~n~l~~~~~--~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         119 LEHN------------------------GISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             CTTS------------------------CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCC
T ss_pred             cccc------------------------cccccc--ccccccccccccccccccccccc--ccccccccccccccccccc
Confidence            5444                        443332  34455555555555555544332  3445556666666665555


Q ss_pred             cccccccCCCCCCeeecccccccccCccccCCCCCCcEEeCC
Q psy12291        276 LHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLD  317 (404)
Q Consensus       276 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  317 (404)
                      +.+  +.++++|++|++++|+++.++  .+..+++|++|+|+
T Consensus       171 i~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         171 IVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEE
T ss_pred             ccc--ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEcc
Confidence            432  455566666666666665542  35556666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.1e-19  Score=165.30  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=50.1

Q ss_pred             CeeEEEcCCCCCcccCh-hhcCCCCCCCEEEccCCcCcccC----cccccCCCCCCEEeCCCCCCccc-----CccccCC
Q psy12291         46 DIRVIDLGINQLSTLSK-DAFTGLYKLTELKLRKNHLSELP----GKLFISTINLSTMDLSQNLIKTL-----PSTFFKG  115 (404)
Q Consensus        46 ~l~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~  115 (404)
                      +++.||++.++++.... ..+..+++++.|+|++|+++...    ..++..+++|++|++++|.++..     .......
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            35556666555554321 12344555555666655554221    12234455566666655555421     1111112


Q ss_pred             CCCCcEEEccCCCCCcCC----CccCCCCCCCCEEECCCCcc
Q psy12291        116 AIRLTVVQLSYNAIESLP----ANVFHDLISLEELDLSQNVL  153 (404)
Q Consensus       116 ~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l  153 (404)
                      ..+|++|++++|.++...    ...+..+++|++|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            235556666555554322    12234455556666555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8e-17  Score=127.39  Aligned_cols=114  Identities=24%  Similarity=0.279  Sum_probs=61.4

Q ss_pred             cCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCCCC
Q psy12291         65 FTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLISLE  144 (404)
Q Consensus        65 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  144 (404)
                      |.+..++++|+|++|+|+.++. .+..+++|++|++++|.++.++.  |..+++|++|++++|.++.++...+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCccccccccccc
Confidence            3444555566666666555542 33455556666666665555532  55555566666666655555554444555555


Q ss_pred             EEECCCCccccccc-ccccCCccCcEEeccCCCCCCCC
Q psy12291        145 ELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRINQLP  181 (404)
Q Consensus       145 ~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~~~~  181 (404)
                      .|++++|.+..+.. ..+..+++|++|++++|.++..+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cceeccccccccccccccccccccchhhcCCCcccccc
Confidence            55555555554432 33445555555555555554443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.9e-16  Score=121.07  Aligned_cols=114  Identities=22%  Similarity=0.256  Sum_probs=74.9

Q ss_pred             CCCCceecCCCceEEecCCCCCccCCCCCCCCCeeEEEcCCC-CCcccChhhcCCCCCCCEEEccCCcCcccCcccccCC
Q psy12291         14 CEGPCRCRPEIHTLSCWKQDMEELPFDQIIPVDIRVIDLGIN-QLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFIST   92 (404)
Q Consensus        14 ~~~~c~c~~~~~~~~~~~~~l~~ip~~~~~~~~l~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~   92 (404)
                      ||..|.|.. ...++|.++++..+|.......+++.|+++++ .++.+.+.+|.++++|+.|++++|+|..+++.+|..+
T Consensus         1 CP~~C~c~~-~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l   79 (156)
T d2ifga3           1 CPDACCPHG-SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT   79 (156)
T ss_dssp             CCSSSCCSS-SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC
T ss_pred             CcCCCCcCC-CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccc
Confidence            788998875 46699999999888866433346666666544 3666666666666666666666666666666666666


Q ss_pred             CCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCC
Q psy12291         93 INLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAI  129 (404)
Q Consensus        93 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l  129 (404)
                      ++|++|+|++|+++.++...|... +|+.|+|++|.+
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          80 PRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             SCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCC
T ss_pred             ccccceeccCCCCcccChhhhccc-cccccccCCCcc
Confidence            666666666666666666555433 455566655554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.7e-16  Score=125.52  Aligned_cols=127  Identities=21%  Similarity=0.248  Sum_probs=75.5

Q ss_pred             CCCCCCCEEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCe
Q psy12291        210 NYFKHLTFLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTA  289 (404)
Q Consensus       210 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  289 (404)
                      .+..++++|++++|.++.++ ..+..+++|+.|++++|.+..++.  +..+++|++|++++|.++.+++..+..+++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccccccc
Confidence            34445566666666665554 234455666666666666666542  556666666666666666665555555666666


Q ss_pred             eecccccccccCc-cccCCCCCCcEEeCCCCCCcccCc---ccccCCCCCcEEE
Q psy12291        290 LFLNNNLLRYLDT-KAFEPMLHLKKLQLDSNKLQYLAT---DSLSLLPNLITLK  339 (404)
Q Consensus       290 L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~  339 (404)
                      |++++|+++.++. ..+..+++|++|++++|.++..+.   ..+..+|+|+.||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            6666666665543 445566666666666666665543   2345566666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.8e-18  Score=156.74  Aligned_cols=278  Identities=20%  Similarity=0.184  Sum_probs=169.9

Q ss_pred             CCCCEEEccCCcCcccC-cccccCCCCCCEEeCCCCCCcccC----ccccCCCCCCcEEEccCCCCCcCC-----CccCC
Q psy12291         69 YKLTELKLRKNHLSELP-GKLFISTINLSTMDLSQNLIKTLP----STFFKGAIRLTVVQLSYNAIESLP-----ANVFH  138 (404)
Q Consensus        69 ~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~  138 (404)
                      .+|+.|+++++++++.. ...+..++++++|+|++|.++...    ..++..+++|++|++++|.++...     .....
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999998644 344577899999999999987422    233678899999999999886321     11122


Q ss_pred             CCCCCCEEECCCCccccccc----ccccCCccCcEEeccCCCCCCCCCCc------------------------------
Q psy12291        139 DLISLEELDLSQNVLTSIQY----GTFSGMYSLKRLKLQSNRINQLPPGI------------------------------  184 (404)
Q Consensus       139 ~l~~L~~L~l~~~~l~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~------------------------------  184 (404)
                      ...+|+.|++++|+++....    ..+..+++|++|++++|.++......                              
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            34589999999999876532    34667899999999998764210000                              


Q ss_pred             ---cCCCCCCCeEecCCCcCc---------------------------------------------------------c-
Q psy12291        185 ---FDDLKYLDFLSLRNNRLS---------------------------------------------------------F-  203 (404)
Q Consensus       185 ---~~~l~~L~~L~l~~~~~~---------------------------------------------------------~-  203 (404)
                         +.....++.+.++++...                                                         . 
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence               001123333443332110                                                         0 


Q ss_pred             ----cCCCccCCCCCCCEEECCCCcCCCCCh----hhhcCCCCCcEEECCCCCCcccCcc-----cccCCCCCcEEECcC
Q psy12291        204 ----IRPGLFNYFKHLTFLELSENWISSLNG----DEFSQLTSLKELHLGQNYIETIPAG-----SFANLQSLEKLFLYS  270 (404)
Q Consensus       204 ----~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~~-----~~~~l~~L~~L~L~~  270 (404)
                          ...........++.+++++|.+.....    ..+...+.++.+++++|.+......     .......|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                000112223456666666665543221    1233456677777777666432111     112345778888888


Q ss_pred             CCcccccccc----ccCCCCCCeeecccccccccCcc----cc-CCCCCCcEEeCCCCCCcccCc----ccccCCCCCcE
Q psy12291        271 NNIQELHAGT----FAGLTNLTALFLNNNLLRYLDTK----AF-EPMLHLKKLQLDSNKLQYLAT----DSLSLLPNLIT  337 (404)
Q Consensus       271 n~l~~~~~~~----~~~~~~L~~L~l~~n~i~~~~~~----~~-~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~  337 (404)
                      +.+.......    +...++|++|+|++|+++..+..    .+ ...+.|++|+|++|.++....    ..+..+++|++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            7776554332    23456788888888887653222    22 345678888888888875322    23455688888


Q ss_pred             EEccCCccc
Q psy12291        338 LKLAKNPWH  346 (404)
Q Consensus       338 l~l~~Np~~  346 (404)
                      |+|++|++.
T Consensus       402 L~Ls~N~i~  410 (460)
T d1z7xw1         402 LDLSNNCLG  410 (460)
T ss_dssp             EECCSSSCC
T ss_pred             EECCCCcCC
Confidence            888888774

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.6e-15  Score=113.96  Aligned_cols=103  Identities=27%  Similarity=0.360  Sum_probs=55.8

Q ss_pred             EEECCCCcCCCCChhhhcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeeccccc
Q psy12291        217 FLELSENWISSLNGDEFSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNL  296 (404)
Q Consensus       217 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~  296 (404)
                      +|++++|.++.++  .+..+++|++|++++|.++.+|. .+..+++|+.|++++|.++.++.  +..+++|++|++++|+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc--cccccccCeEECCCCc
Confidence            4555555555443  24555555666666665555554 34555556666666655555532  4555555555555555


Q ss_pred             ccccCc-cccCCCCCCcEEeCCCCCCccc
Q psy12291        297 LRYLDT-KAFEPMLHLKKLQLDSNKLQYL  324 (404)
Q Consensus       297 i~~~~~-~~~~~l~~L~~L~l~~n~l~~~  324 (404)
                      |+.++. ..+..+++|+.|++++|+++.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            555532 3445555555555555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.2e-15  Score=113.19  Aligned_cols=104  Identities=25%  Similarity=0.308  Sum_probs=72.1

Q ss_pred             eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCC
Q psy12291         48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYN  127 (404)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n  127 (404)
                      |.|++++|+++.+.  .+.++++|++|++++|.++++|.. |..+++|++|++++|.++.++.  +..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc--cccccccCeEECCCC
Confidence            46777777777664  366777777777777777777653 5667777777777777777654  667777777777777


Q ss_pred             CCCcCCC-ccCCCCCCCCEEECCCCccccc
Q psy12291        128 AIESLPA-NVFHDLISLEELDLSQNVLTSI  156 (404)
Q Consensus       128 ~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~  156 (404)
                      .++.++. ..+..+++|+.|++++|++...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            7776653 3456667777777777766543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.8e-16  Score=135.19  Aligned_cols=224  Identities=16%  Similarity=0.136  Sum_probs=107.4

Q ss_pred             eEEEcCCCCCcccChhhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCccc-CccccCCCCCCcEEEccC
Q psy12291         48 RVIDLGINQLSTLSKDAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTL-PSTFFKGAIRLTVVQLSY  126 (404)
Q Consensus        48 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~  126 (404)
                      +++|++++.+..-....+.. ..+..+.++...+...... .....+|++|+++++.++.. ....+..+++|++|++.+
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            35677766653221111111 2344555554443332222 23445677777777765531 223466677777777777


Q ss_pred             CCCCcCCCccCCCCCCCCEEECCCC-ccccccccc-ccCCccCcEEeccCCC-CCCC--CCCccCCCCCCCeEecCCCcC
Q psy12291        127 NAIESLPANVFHDLISLEELDLSQN-VLTSIQYGT-FSGMYSLKRLKLQSNR-INQL--PPGIFDDLKYLDFLSLRNNRL  201 (404)
Q Consensus       127 n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~-l~~l~~L~~L~l~~~~-l~~~--~~~~~~~l~~L~~L~l~~~~~  201 (404)
                      +.+.......+..+++|+.|+++++ .++...... +.++++|++|+++++. ++..  ........++|+.|+++++..
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  160 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK  160 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence            7665433333455667777777764 343222111 2345666666666642 2210  000001123444444443211


Q ss_pred             cccCCCccCCCCCCCEEECCCCcCCCCCh-hhhcCCCCCcEEECCCC-CCcccCcccccCCCCCcEEECcCC-Ccccccc
Q psy12291        202 SFIRPGLFNYFKHLTFLELSENWISSLNG-DEFSQLTSLKELHLGQN-YIETIPAGSFANLQSLEKLFLYSN-NIQELHA  278 (404)
Q Consensus       202 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  278 (404)
                                            .++.... ..+..+++|++|++++| .+++.....+..+++|++|++++| .+++...
T Consensus       161 ----------------------~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         161 ----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             ----------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             ----------------------ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH
Confidence                                  1111110 11234555666666554 233333234455666666666663 4554444


Q ss_pred             ccccCCCCCCeeecccc
Q psy12291        279 GTFAGLTNLTALFLNNN  295 (404)
Q Consensus       279 ~~~~~~~~L~~L~l~~n  295 (404)
                      ..++.+++|++|+++++
T Consensus       219 ~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         219 LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTS
T ss_pred             HHHhcCCCCCEEeeeCC
Confidence            44556666666666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.5e-15  Score=127.93  Aligned_cols=60  Identities=23%  Similarity=0.079  Sum_probs=29.9

Q ss_pred             CCCCCeEecCCCc-CcccCCCccCCCCCCCEEECCCC-cCCCCChhhhcCCCCCcEEECCCC
Q psy12291        188 LKYLDFLSLRNNR-LSFIRPGLFNYFKHLTFLELSEN-WISSLNGDEFSQLTSLKELHLGQN  247 (404)
Q Consensus       188 l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~  247 (404)
                      +++|++|++++|. ++......+..+++|++|++++| .++......+..+++|+.|+++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4455555555432 33333333445555666666553 333333334555666666666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=7.5e-15  Score=131.50  Aligned_cols=241  Identities=19%  Similarity=0.156  Sum_probs=124.5

Q ss_pred             hcCCCCCCCEEEccCCcCcccC----cccccCCCCCCEEeCCCCCCcccCc----------cccCCCCCCcEEEccCCCC
Q psy12291         64 AFTGLYKLTELKLRKNHLSELP----GKLFISTINLSTMDLSQNLIKTLPS----------TFFKGAIRLTVVQLSYNAI  129 (404)
Q Consensus        64 ~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----------~~~~~~~~L~~L~l~~n~l  129 (404)
                      ++.+...|+.|+|++|.+....    ...+...++|+.|+++++.......          ..+...++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            3455677888888877765322    1224556777888877765432211          1244566777777777766


Q ss_pred             CcCCCc----cCCCCCCCCEEECCCCcccccccccc-------------cCCccCcEEeccCCCCCCCCCCccCCCCCCC
Q psy12291        130 ESLPAN----VFHDLISLEELDLSQNVLTSIQYGTF-------------SGMYSLKRLKLQSNRINQLPPGIFDDLKYLD  192 (404)
Q Consensus       130 ~~~~~~----~~~~l~~L~~L~l~~~~l~~~~~~~l-------------~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~  192 (404)
                      ......    .+...++|++|++++|.+.......+             ...+.|+.+.++++.++......        
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~--------  177 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE--------  177 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH--------
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc--------
Confidence            543211    12345667777777766543211111             12334444554444433211000        


Q ss_pred             eEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCC-----hhhhcCCCCCcEEECCCCCCcccC----cccccCCCCC
Q psy12291        193 FLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLN-----GDEFSQLTSLKELHLGQNYIETIP----AGSFANLQSL  263 (404)
Q Consensus       193 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L  263 (404)
                                  ....+...+.++.|+++.|.+....     ...+...++|+.|++++|.+....    ...+..+++|
T Consensus       178 ------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         178 ------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  245 (344)
T ss_dssp             ------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             ------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccc
Confidence                        0111223345555555555543211     122344556666666666654321    1234456677


Q ss_pred             cEEECcCCCccccccccc----c--CCCCCCeeecccccccccCc----ccc-CCCCCCcEEeCCCCCCccc
Q psy12291        264 EKLFLYSNNIQELHAGTF----A--GLTNLTALFLNNNLLRYLDT----KAF-EPMLHLKKLQLDSNKLQYL  324 (404)
Q Consensus       264 ~~L~L~~n~l~~~~~~~~----~--~~~~L~~L~l~~n~i~~~~~----~~~-~~l~~L~~L~l~~n~l~~~  324 (404)
                      +.|++++|.+++.....+    .  ..+.|++|++++|+|+....    ..+ ...++|+.|+|++|++...
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            777777776665333222    2  23567777777777654322    222 2456788888888887654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.2e-14  Score=130.01  Aligned_cols=261  Identities=20%  Similarity=0.174  Sum_probs=152.1

Q ss_pred             ccCCCCCCEEeCCCCCCcccC----ccccCCCCCCcEEEccCCCCCcCCC----------ccCCCCCCCCEEECCCCccc
Q psy12291         89 FISTINLSTMDLSQNLIKTLP----STFFKGAIRLTVVQLSYNAIESLPA----------NVFHDLISLEELDLSQNVLT  154 (404)
Q Consensus        89 ~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~~~l~  154 (404)
                      +.....|+.|++++|.+....    ...+...++|+.++++++.......          ..+...++|+.|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            345667888888887765321    1225556677777777664432211          11223445555555555443


Q ss_pred             ccccc----cccCCccCcEEeccCCCCCCCCCCccCCCCCCCeEecCCCcCcccCCCccCCCCCCCEEECCCCcCCCCCh
Q psy12291        155 SIQYG----TFSGMYSLKRLKLQSNRINQLPPGIFDDLKYLDFLSLRNNRLSFIRPGLFNYFKHLTFLELSENWISSLNG  230 (404)
Q Consensus       155 ~~~~~----~l~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  230 (404)
                      .....    .+...++|++|++++|.+.......+.  ..+..+         .........+.++.+.++++.+.....
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQEL---------AVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--HHHHHH---------HHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cccccchhhhhcccccchheeccccccccccccccc--cccccc---------ccccccccCcccceeeccccccccccc
Confidence            32211    112234444444444433211000000  000000         000012345678888888887764432


Q ss_pred             ----hhhcCCCCCcEEECCCCCCccc-----CcccccCCCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccc
Q psy12291        231 ----DEFSQLTSLKELHLGQNYIETI-----PAGSFANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLL  297 (404)
Q Consensus       231 ----~~~~~l~~L~~L~l~~~~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i  297 (404)
                          ..+...+.|+.|++++|.+...     ....+...++|+.|++++|.++....    ..+..+++|++|++++|.|
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence                2345678999999999988742     12346678999999999999875432    3567789999999999998


Q ss_pred             cccCccc----cC--CCCCCcEEeCCCCCCcccCcc----cc-cCCCCCcEEEccCCccccccC-cHHHHHHHHh
Q psy12291        298 RYLDTKA----FE--PMLHLKKLQLDSNKLQYLATD----SL-SLLPNLITLKLAKNPWHCDCA-ILYMARWLRA  360 (404)
Q Consensus       298 ~~~~~~~----~~--~l~~L~~L~l~~n~l~~~~~~----~~-~~l~~L~~l~l~~Np~~C~c~-~~~~~~~~~~  360 (404)
                      +......    +.  ..+.|++|++++|+++.....    .+ ...++|+.|++++|.+..+.. ..++...+..
T Consensus       256 ~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~~~~l~~~~~~  330 (344)
T d2ca6a1         256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST  330 (344)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchHHHHHHHHHHH
Confidence            8654332    22  246799999999998764322    22 257899999999999976543 2334443333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=2.7e-15  Score=122.72  Aligned_cols=108  Identities=31%  Similarity=0.410  Sum_probs=49.5

Q ss_pred             hcCCCCCcEEECCCCCCcccCcccccCCCCCcEEECcCCCccccccccccCCCCCCeeecccccccccCccccCCCCCCc
Q psy12291        233 FSQLTSLKELHLGQNYIETIPAGSFANLQSLEKLFLYSNNIQELHAGTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLK  312 (404)
Q Consensus       233 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~  312 (404)
                      +..+++|++|++++|.+..++.  +..+++|+.|++++|.++.++. .+..+++|++|++++|+++.++  .+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHHSS
T ss_pred             HhcccccceeECcccCCCCccc--ccCCccccChhhcccccccccc-cccccccccccccccccccccc--ccccccccc
Confidence            4444445555555544444432  3444455555555554444432 1222334555555555554432  233344555


Q ss_pred             EEeCCCCCCcccCc-ccccCCCCCcEEEccCCcc
Q psy12291        313 KLQLDSNKLQYLAT-DSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       313 ~L~l~~n~l~~~~~-~~~~~l~~L~~l~l~~Np~  345 (404)
                      .|++++|+++.++. ..+..+++|+.|++++||+
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCcc
Confidence            55555555544432 2344455555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.33  E-value=1.9e-15  Score=123.68  Aligned_cols=111  Identities=26%  Similarity=0.344  Sum_probs=63.1

Q ss_pred             hhcCCCCCCCEEEccCCcCcccCcccccCCCCCCEEeCCCCCCcccCccccCCCCCCcEEEccCCCCCcCCCccCCCCCC
Q psy12291         63 DAFTGLYKLTELKLRKNHLSELPGKLFISTINLSTMDLSQNLIKTLPSTFFKGAIRLTVVQLSYNAIESLPANVFHDLIS  142 (404)
Q Consensus        63 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  142 (404)
                      .++..+++|++|++++|+|+.++.  |..+++|++|++++|.++.++.. +..+++|++|++++|.++.+++  +..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l~~--~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLSG--IEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCHHH--HHHHHH
T ss_pred             hHHhcccccceeECcccCCCCccc--ccCCccccChhhccccccccccc-cccccccccccccccccccccc--cccccc
Confidence            346666666777776666666642  45666666666666666665532 2334456666666666655432  344555


Q ss_pred             CCEEECCCCccccccc-ccccCCccCcEEeccCCCCC
Q psy12291        143 LEELDLSQNVLTSIQY-GTFSGMYSLKRLKLQSNRIN  178 (404)
Q Consensus       143 L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~l~  178 (404)
                      |+.|++++|.+..+.. ..+..+++|+.|++++|.+.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccc
Confidence            6666666665554432 23455555555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1e-09  Score=85.84  Aligned_cols=62  Identities=29%  Similarity=0.210  Sum_probs=24.2

Q ss_pred             CCCCCeeecccccccccCc--cccCCCCCCcEEeCCCCCCcccCcccccCCCCCcEEEccCCcc
Q psy12291        284 LTNLTALFLNNNLLRYLDT--KAFEPMLHLKKLQLDSNKLQYLATDSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       284 ~~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~Np~  345 (404)
                      ++.|++|+|++|+|+.+..  ..+..+++|+.|++++|.+++++.-.......|+.+++.+||+
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            3444444444444443321  2223334444444444444444332222223344444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1e-07  Score=74.14  Aligned_cols=81  Identities=28%  Similarity=0.271  Sum_probs=38.4

Q ss_pred             CCCCCcEEECcCCCcccccc--ccccCCCCCCeeecccccccccCccccCCCCCCcEEeCCCCCCcccCcc-------cc
Q psy12291        259 NLQSLEKLFLYSNNIQELHA--GTFAGLTNLTALFLNNNLLRYLDTKAFEPMLHLKKLQLDSNKLQYLATD-------SL  329 (404)
Q Consensus       259 ~l~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~  329 (404)
                      .++.|+.|+|++|+|+.+..  ..+..+++|+.|++++|+|+.++...+-....|+.|++++|.+......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            34455555555555554432  2234455555555555555555442222233455555555555443221       23


Q ss_pred             cCCCCCcEEE
Q psy12291        330 SLLPNLITLK  339 (404)
Q Consensus       330 ~~l~~L~~l~  339 (404)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4456665554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.84  E-value=6.8e-06  Score=63.81  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=53.2

Q ss_pred             ccCCCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccCc----cccCCCCCCcEEeCCCCCCcccCc--
Q psy12291        257 FANLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQLDSNKLQYLAT--  326 (404)
Q Consensus       257 ~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~--  326 (404)
                      +...+.|+.|+|++|.+.+...    .++...+.|++|+|++|.++....    .++...+.|++|++++|.+..++.  
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~  119 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  119 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence            3445566666666666654222    223345667777777776664322    345566778888887776665543  


Q ss_pred             -----ccccCCCCCcEEEccCCcc
Q psy12291        327 -----DSLSLLPNLITLKLAKNPW  345 (404)
Q Consensus       327 -----~~~~~l~~L~~l~l~~Np~  345 (404)
                           ..+...++|+.|+++.+..
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhCCCccEeeCcCCCc
Confidence                 2234467888888876654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=1.2e-05  Score=62.30  Aligned_cols=110  Identities=14%  Similarity=0.048  Sum_probs=63.6

Q ss_pred             CCCCCCEEECCCC-cCCCCC----hhhhcCCCCCcEEECCCCCCcccCc----ccccCCCCCcEEECcCCCcccccc---
Q psy12291        211 YFKHLTFLELSEN-WISSLN----GDEFSQLTSLKELHLGQNYIETIPA----GSFANLQSLEKLFLYSNNIQELHA---  278 (404)
Q Consensus       211 ~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~---  278 (404)
                      +.+.|++|+++++ .+....    ..++...++|++|++++|.+.....    ..+...+.|+.|+|++|.+.....   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455666666543 232211    1234455667777777776653211    233445777788887777765332   


Q ss_pred             -ccccCCCCCCeeecccccccccCc-------cccCCCCCCcEEeCCCCC
Q psy12291        279 -GTFAGLTNLTALFLNNNLLRYLDT-------KAFEPMLHLKKLQLDSNK  320 (404)
Q Consensus       279 -~~~~~~~~L~~L~l~~n~i~~~~~-------~~~~~l~~L~~L~l~~n~  320 (404)
                       .++...++|++|++++|++..++.       ..+...+.|+.|+++.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             245556778888888776655432       334456778888886654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.11  E-value=8.8e-05  Score=57.18  Aligned_cols=88  Identities=14%  Similarity=0.109  Sum_probs=47.2

Q ss_pred             CCCCCcEEECcCCCcccccc----ccccCCCCCCeeecccccccccCc----cccCCCCCCcEEeC--CCCCCcccC---
Q psy12291        259 NLQSLEKLFLYSNNIQELHA----GTFAGLTNLTALFLNNNLLRYLDT----KAFEPMLHLKKLQL--DSNKLQYLA---  325 (404)
Q Consensus       259 ~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l--~~n~l~~~~---  325 (404)
                      ..+.|++|++++|.+.....    ..+...++++.+++++|.++....    .++...++|+.++|  ++|.+..-.   
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            44555666666655543222    223344566666666665543222    34455566766444  345554422   


Q ss_pred             -cccccCCCCCcEEEccCCccc
Q psy12291        326 -TDSLSLLPNLITLKLAKNPWH  346 (404)
Q Consensus       326 -~~~~~~l~~L~~l~l~~Np~~  346 (404)
                       ...+...++|+.|++..+...
T Consensus       124 La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeCcCCCCc
Confidence             123456778888888776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.99  E-value=0.00017  Score=55.44  Aligned_cols=111  Identities=16%  Similarity=0.041  Sum_probs=63.1

Q ss_pred             CCCCCCEEECCCC-cCCCCCh----hhhcCCCCCcEEECCCCCCcccCc----ccccCCCCCcEEECcCCCcccccc---
Q psy12291        211 YFKHLTFLELSEN-WISSLNG----DEFSQLTSLKELHLGQNYIETIPA----GSFANLQSLEKLFLYSNNIQELHA---  278 (404)
Q Consensus       211 ~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~---  278 (404)
                      +.+.|++|++++. .++....    .++...++|++|++++|.+.....    ..+...++++.++++++.+.....   
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4456666666652 3332211    233456677777777776653221    133455777788887777664322   


Q ss_pred             -ccccCCCCCCeeec--ccccccccC----ccccCCCCCCcEEeCCCCCC
Q psy12291        279 -GTFAGLTNLTALFL--NNNLLRYLD----TKAFEPMLHLKKLQLDSNKL  321 (404)
Q Consensus       279 -~~~~~~~~L~~L~l--~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l  321 (404)
                       .++...++|+.++|  ++|.+....    ...+...+.|+.|+++.+..
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             34555677776555  455665422    23445677888888876653