Psyllid ID: psy12396

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPRTKRRSVFLINANCKAVHPLTS
ccEEEcccccccEEEEEcccccccccEEEEEEEEEEcccccEEEEEEcccccccEEEEEEEccEEEEEEEcccccEEEEcccccccccccEEEEEEEEccEEEEEEccEEEEEEEEccccccccccccEEEcccccccccccccccccccccccEEEcEEEccEEcccccccccEEcccccccccEEEcccccEEEEEcccccccEEEEEEEEEEccccEEEEEEcccccEEEEEEEccEEEEEEEcccccEEEEEcccccEEcccccEEEEEEEEEccEEEEEEcccccccccccccccccccccccEEEccccccccccccccccccccEEEEEEcccEEEccccc
cEEEEEEEcccccEEEEccccccccccEEEEEEEEEcccccEEEEEEEccccccEEEEEEEccEEEEEEEcccccEEEEEcccccccccEEEEEEEEEccEEEEEEcccccEEcccccccccccccccEEEcccccccccccccccccccccEEEEEEEEEcccEccccccccccccccccccccEEEccccEEEEEcccccccccEEEEEEEEEccccEEEEEEcccccEEEEEEEccEEEEEEEccccEEEEEEccccccHHHccccEEEEEEEEccEEEEEEccEEEEEccccccccccccccccEEEccccccccccccccccccEEEEEEEcccccccccccc
msyyviagtskssrieyptitgrfknkfdfsidikttseqdgiIFYVADVKHIDYVALYVKdgqihysfncgsgpmalssgdklildgewhtvEFSRQQLsgklkidgqvvaegeskgssktlnifgpfylggvplntstlvrgnlglndtfVGCLRNlksnnklvqdkhtssgvipcsdktesgvffynsggyvkgvEQFRVGREMelkmdvkprnisGLLLSVHSKKDYFILQMIDgsvkatvdngkgpisaiytpsdpyffcdgqwHTIVAIKTKNVISVAVDsmttdkpglgppgssetdtnnavfigghpflslsskksgprtkrrSVFLINanckavhplts
msyyviagtskssrieyptitgrfknkfdfsIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSrqqlsgklkIDGQVVAEgeskgssktlnIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSnnklvqdkhtssgvipcsdktESGVFFYNSGGYVKGVEQFRVGREMELkmdvkprniSGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPflslsskksgprtkrrsvflinanckavhplts
MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPRTKRRSVFLINANCKAVHPLTS
***YVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVV**********TLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQD****SGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVD**********************VFIGGHPF****************VFLINANCKA******
MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGS***********ILDGEWHTVEFSRQQLSGKLKIDGQVV***********LNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSM****************TNNAVFIGGHPFLSLSSKKSGPRTKRRSVFLINANCKAVHP***
MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDK**********TDTNNAVFIGGHPFLSLS********KRRSVFLINANCKAVHPLTS
MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPRTKRRSVFLINAN*********
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MSYYVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSLSSKKSGPRTKRRSVFLINANCKAVHPLTS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
Q163631823 Laminin subunit alpha-4 O yes N/A 0.859 0.164 0.358 1e-42
Q001743712 Laminin subunit alpha OS= yes N/A 0.859 0.080 0.343 3e-41
P979271816 Laminin subunit alpha-4 O yes N/A 0.859 0.164 0.352 2e-40
Q213133672 Laminin-like protein epi- yes N/A 0.856 0.081 0.322 7e-37
P240433122 Laminin subunit alpha-2 O no N/A 0.864 0.096 0.305 2e-35
P191373084 Laminin subunit alpha-1 O no N/A 0.862 0.097 0.302 2e-33
Q606753106 Laminin subunit alpha-2 O no N/A 0.859 0.096 0.319 9e-33
P253913075 Laminin subunit alpha-1 O no N/A 0.864 0.097 0.293 1e-31
Q167873333 Laminin subunit alpha-3 O no N/A 0.795 0.083 0.291 5e-29
Q617893333 Laminin subunit alpha-3 O no N/A 0.830 0.086 0.285 8e-26
>sp|Q16363|LAMA4_HUMAN Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 PE=1 SV=4 Back     alignment and function desciption
 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 161/312 (51%), Gaps = 13/312 (4%)

Query: 8    GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
            G + +SR E+  + G F  K  FSI ++T S   G+IFYV+D +  D++ L++  G++ Y
Sbjct: 1473 GGTANSRQEFEHLKGDFGAKSQFSIRLRTRSSH-GMIFYVSDQEENDFMTLFLAHGRLVY 1531

Query: 68   SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
             FN G   + + S +K   DG WH V F R++ SG+L IDG  V E     +  T  I G
Sbjct: 1532 MFNVGHKKLKIRSQEKYN-DGLWHDVIFIRERSSGRLVIDGLRVLEESLPPTEATWKIKG 1590

Query: 128  PFYLGGVPLNTSTLVRGNLGLND--TFVGCLRNLKSNNKLVQDKHTSSGVIPCSD-KTES 184
            P YLGGV    +     N+ +N   +F GCL NL+ N   +     +  V PC +   E+
Sbjct: 1591 PIYLGGVAPGKAV---KNVQINSIYSFSGCLSNLQLNGASITSASQTFSVTPCFEGPMET 1647

Query: 185  GVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHS-KKDYFILQMIDGSVKA 243
            G +F   GGYV   E F +G + E+  +V+PR+ SG L+  HS   +Y  + M +G V  
Sbjct: 1648 GTYFSTEGGYVVLDESFNIGLKFEIAFEVRPRSSSGTLVHGHSVNGEYLNVHMKNGQVIV 1707

Query: 244  TVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSET 303
             V+NG    S   TP      CDG+WH I  I+  NV+ + VDS       +GP      
Sbjct: 1708 KVNNGIRDFSTSVTPKQS--LCDGRWHRITVIRDSNVVQLDVDSEVNHV--VGPLNPKPI 1763

Query: 304  DTNNAVFIGGHP 315
            D    VF+GG P
Sbjct: 1764 DHREPVFVGGVP 1775
Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Homo sapiens (taxid: 9606)
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2 Back     alignment and function description
>sp|P97927|LAMA4_MOUSE Laminin subunit alpha-4 OS=Mus musculus GN=Lama4 PE=1 SV=2 Back     alignment and function description
>sp|Q21313|EPI1_CAEEL Laminin-like protein epi-1 OS=Caenorhabditis elegans GN=epi-1 PE=1 SV=1 Back     alignment and function description
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4 Back     alignment and function description
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1 Back     alignment and function description
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1 Back     alignment and function description
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2 Back     alignment and function description
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2 Back     alignment and function description
>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
242022324 3650 laminin A chain, putative [Pediculus hum 0.867 0.082 0.477 1e-81
383866057 3680 PREDICTED: laminin subunit alpha-like [M 0.882 0.083 0.442 4e-72
340715997 3666 PREDICTED: laminin subunit alpha-like [B 0.882 0.083 0.435 3e-71
350408641 3666 PREDICTED: laminin subunit alpha-like [B 0.882 0.083 0.435 3e-71
332020404 3661 Laminin subunit alpha [Acromyrmex echina 0.882 0.083 0.419 4e-70
270004142 1517 hypothetical protein TcasGA2_TC003461 [T 0.899 0.206 0.420 2e-69
189235268 4228 PREDICTED: similar to laminin A chain, p 0.899 0.074 0.420 1e-68
345495089 3648 PREDICTED: laminin subunit alpha-like [N 0.931 0.088 0.398 8e-68
380019683 3670 PREDICTED: laminin subunit alpha-like [A 0.882 0.083 0.432 1e-67
307167492 3660 Laminin subunit alpha [Camponotus florid 0.919 0.087 0.430 2e-67
>gi|242022324|ref|XP_002431590.1| laminin A chain, putative [Pediculus humanus corporis] gi|212516898|gb|EEB18852.1| laminin A chain, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/310 (47%), Positives = 211/310 (68%), Gaps = 8/310 (2%)

Query: 8    GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
            GT   SRIE+ ++ GR KN FD+S++ KT    DG++FY +D  HID+ ALY+K G++ +
Sbjct: 3295 GTQNGSRIEFASLPGRNKNTFDYSLEFKT-HYPDGLLFYASDKGHIDFAALYIKGGKLFF 3353

Query: 68   SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
             FNCGSG   ++S D    DG WH+V  +R+   G L +DGQ    GES G++KTLN+  
Sbjct: 3354 GFNCGSGAALITSPDSFD-DGNWHSVRITRENTVGHLIVDGQNPIIGESSGNTKTLNVIS 3412

Query: 128  PFYLGGVPLNTSTLVRGNL----GLNDTFVGCLRNLKSNNKLVQDKHTSSGVIPCSDKTE 183
            P+YLGG         + N+     LN +F GC+R  ++NNK V+      GV+PCSD TE
Sbjct: 3413 PYYLGGFDPAIIESAKHNIQVRRSLNQSFAGCVRKFQANNKEVK-PSVKRGVVPCSDHTE 3471

Query: 184  SGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKKDYFILQMIDGSVKA 243
             G+FF + GG+V+ V+ FRVG  +E+KM +KPR+ SG+LL+VH KKDY  LQM++G ++ 
Sbjct: 3472 PGIFFASGGGFVRAVDSFRVGTNIEIKMQIKPRSTSGVLLAVHGKKDYLFLQMVNGVIEF 3531

Query: 244  TVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSET 303
            TVDNG+GP ++ Y P D YFFCDG+WH I A++ KNVI ++VDS + + PG+G PGS+ T
Sbjct: 3532 TVDNGRGPFTSAYKPGDEYFFCDGRWHFIHAVQAKNVIVLSVDSFSVE-PGIGTPGSTVT 3590

Query: 304  DTNNAVFIGG 313
            DT + +++GG
Sbjct: 3591 DTKHPLYLGG 3600

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383866057|ref|XP_003708488.1| PREDICTED: laminin subunit alpha-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340715997|ref|XP_003396491.1| PREDICTED: laminin subunit alpha-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350408641|ref|XP_003488468.1| PREDICTED: laminin subunit alpha-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332020404|gb|EGI60824.1| Laminin subunit alpha [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|270004142|gb|EFA00590.1| hypothetical protein TcasGA2_TC003461 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189235268|ref|XP_972827.2| PREDICTED: similar to laminin A chain, putative [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345495089|ref|XP_001603629.2| PREDICTED: laminin subunit alpha-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|380019683|ref|XP_003693732.1| PREDICTED: laminin subunit alpha-like [Apis florea] Back     alignment and taxonomy information
>gi|307167492|gb|EFN61065.1| Laminin subunit alpha [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
UNIPROTKB|Q163631823 LAMA4 "Laminin subunit alpha-4 0.896 0.171 0.360 2.3e-42
RGD|15600621580 Lama4 "laminin, alpha 4" [Ratt 0.867 0.191 0.363 3.8e-42
UNIPROTKB|F1RZM41471 LAMA4 "Uncharacterized protein 0.896 0.212 0.354 4.3e-42
UNIPROTKB|F1P4203090 LAMA2 "Uncharacterized protein 0.862 0.097 0.333 2e-41
UNIPROTKB|F1PR661760 LAMA4 "Uncharacterized protein 0.896 0.177 0.354 5.2e-41
MGI|MGI:1093211816 Lama4 "laminin, alpha 4" [Mus 0.896 0.171 0.354 9e-41
UNIPROTKB|F1NSZ51766 LAMA4 "Uncharacterized protein 0.885 0.174 0.347 1.4e-40
FB|FBgn00025263712 LanA "Laminin A" [Drosophila m 0.859 0.080 0.343 2.9e-40
UNIPROTKB|F1MYX91824 LAMA4 "Uncharacterized protein 0.896 0.171 0.348 3.1e-40
ZFIN|ZDB-GENE-060119-13124 lama2 "laminin, alpha 2" [Dani 0.862 0.096 0.313 1e-39
UNIPROTKB|Q16363 LAMA4 "Laminin subunit alpha-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 463 (168.0 bits), Expect = 2.3e-42, P = 2.3e-42
 Identities = 118/327 (36%), Positives = 170/327 (51%)

Query:     4 YVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDG 63
             Y   GT+ +SR E+  + G F  K  FSI ++T S   G+IFYV+D +  D++ L++  G
Sbjct:  1470 YQYGGTA-NSRQEFEHLKGDFGAKSQFSIRLRTRSSH-GMIFYVSDQEENDFMTLFLAHG 1527

Query:    64 QIHYSFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTL 123
             ++ Y FN G   + + S +K   DG WH V F R++ SG+L IDG  V E     +  T 
Sbjct:  1528 RLVYMFNVGHKKLKIRSQEKYN-DGLWHDVIFIRERSSGRLVIDGLRVLEESLPPTEATW 1586

Query:   124 NIFGPFYLGGVPLNTSTLVRGNLGLND--TFVGCLRNLKSNNKLVQDKHTSSGVIPCSD- 180
              I GP YLGGV    +  V+ N+ +N   +F GCL NL+ N   +     +  V PC + 
Sbjct:  1587 KIKGPIYLGGVAPGKA--VK-NVQINSIYSFSGCLSNLQLNGASITSASQTFSVTPCFEG 1643

Query:   181 KTESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDG 239
               E+G +F   GGYV   E F +G + E+  +V+PR+ SG L+  HS   +Y  + M +G
Sbjct:  1644 PMETGTYFSTEGGYVVLDESFNIGLKFEIAFEVRPRSSSGTLVHGHSVNGEYLNVHMKNG 1703

Query:   240 SVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPG 299
              V   V+NG    S   TP      CDG+WH I  I+  NV+ + VDS       +GP  
Sbjct:  1704 QVIVKVNNGIRDFSTSVTPKQS--LCDGRWHRITVIRDSNVVQLDVDSEVNHV--VGPLN 1759

Query:   300 SSETDTNNAVFIGGHPFLSLSSKKSGP 326
                 D    VF+GG P  SL + +  P
Sbjct:  1760 PKPIDHREPVFVGGVPE-SLLTPRLAP 1785
GO:0005102 "receptor binding" evidence=IEA
GO:0005606 "laminin-1 complex" evidence=IEA
GO:0030155 "regulation of cell adhesion" evidence=IEA
GO:0030334 "regulation of cell migration" evidence=IEA
GO:0045995 "regulation of embryonic development" evidence=IEA
GO:0007155 "cell adhesion" evidence=IEA
GO:0001568 "blood vessel development" evidence=IEA
GO:0050873 "brown fat cell differentiation" evidence=IEA
GO:0005604 "basement membrane" evidence=IDA
GO:0070062 "extracellular vesicular exosome" evidence=IDA
GO:0005201 "extracellular matrix structural constituent" evidence=TAS
GO:0005605 "basal lamina" evidence=TAS
GO:0031012 "extracellular matrix" evidence=ISS
RGD|1560062 Lama4 "laminin, alpha 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZM4 LAMA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P420 LAMA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PR66 LAMA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:109321 Lama4 "laminin, alpha 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSZ5 LAMA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0002526 LanA "Laminin A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYX9 LAMA4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060119-1 lama2 "laminin, alpha 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
smart00282132 smart00282, LamG, Laminin G domain 4e-35
cd00110151 cd00110, LamG, Laminin G domain; Laminin G-like do 3e-33
pfam02210124 pfam02210, Laminin_G_2, Laminin G domain 5e-29
pfam00054131 pfam00054, Laminin_G_1, Laminin G domain 2e-23
cd00110151 cd00110, LamG, Laminin G domain; Laminin G-like do 8e-18
smart00282132 smart00282, LamG, Laminin G domain 4e-17
pfam02210124 pfam02210, Laminin_G_2, Laminin G domain 1e-14
pfam00054131 pfam00054, Laminin_G_1, Laminin G domain 1e-09
>gnl|CDD|214598 smart00282, LamG, Laminin G domain Back     alignment and domain information 
 Score =  124 bits (313), Expect = 4e-35
 Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 4/136 (2%)

Query: 29  DFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDKLILDG 88
             S   +TTS  +G++ Y       DY+AL ++DG++   ++ GSGP  L+S    + DG
Sbjct: 1   SISFSFRTTSP-NGLLLYAGSKGGGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDG 59

Query: 89  EWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGL 148
           +WH V   R   S  L +DG     GES G    LN+ GP YLGG+P     L    L +
Sbjct: 60  QWHRVAVERNGRSVTLSVDGGNRVSGESPGGLTILNLDGPLYLGGLP---EDLKLPPLPV 116

Query: 149 NDTFVGCLRNLKSNNK 164
              F GC+RNLK N K
Sbjct: 117 TPGFRGCIRNLKVNGK 132

Length = 132
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain Back     alignment and domain information
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain Back     alignment and domain information
>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>gnl|CDD|214598 smart00282, LamG, Laminin G domain Back     alignment and domain information
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain Back     alignment and domain information
>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
KOG3514|consensus 1591 100.0
KOG3514|consensus 1591 100.0
KOG3516|consensus 1306 100.0
KOG3516|consensus 1306 100.0
KOG4289|consensus 2531 100.0
PF00054131 Laminin_G_1: Laminin G domain; InterPro: IPR012679 99.94
cd00110151 LamG Laminin G domain; Laminin G-like domains are 99.92
smart00282135 LamG Laminin G domain. 99.92
PF00054131 Laminin_G_1: Laminin G domain; InterPro: IPR012679 99.91
smart00282135 LamG Laminin G domain. 99.9
cd00110151 LamG Laminin G domain; Laminin G-like domains are 99.9
PF02210128 Laminin_G_2: Laminin G domain; InterPro: IPR012680 99.88
PF02210128 Laminin_G_2: Laminin G domain; InterPro: IPR012680 99.84
KOG1219|consensus 4289 99.68
KOG4289|consensus 2531 99.55
KOG1219|consensus 4289 99.48
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 99.07
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 99.04
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 98.74
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 98.7
cd00152201 PTX Pentraxins are plasma proteins characterized b 98.3
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 98.29
cd00152201 PTX Pentraxins are plasma proteins characterized b 98.27
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 98.21
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 98.02
PF00354195 Pentaxin: Pentaxin family; InterPro: IPR001759 Pen 97.98
PF02973190 Sialidase: Sialidase, N-terminal domain; InterPro: 97.81
smart00560133 LamGL LamG-like jellyroll fold domain. 97.43
PF00354195 Pentaxin: Pentaxin family; InterPro: IPR001759 Pen 97.37
KOG1836|consensus1705 96.99
smart00560133 LamGL LamG-like jellyroll fold domain. 96.74
KOG3509|consensus 964 95.58
KOG1834|consensus 952 95.3
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 94.4
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 93.3
KOG1834|consensus 952 93.06
KOG3509|consensus 964 90.21
KOG3546|consensus 1167 87.91
PF14099224 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 87.8
PF07953195 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal 80.44
>KOG3514|consensus Back     alignment and domain information 
Probab=100.00  E-value=8e-40  Score=313.92  Aligned_cols=326  Identities=21%  Similarity=0.325  Sum_probs=255.9

Q ss_pred             eeeEeCCCCeeeEEecCCc-CcccceEEEEEEEEcCCCCCeEEEEEecCCCCcEEEEEEeCcEEEEEEEcCCCCceee--
Q psy12396          3 YYVIAGTSKSSRIEYPTIT-GRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALS--   79 (348)
Q Consensus         3 ~~~~F~g~~~sy~~~~~~~-~~~~~~~~i~~~FrT~~~~~GlLl~~~~~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~--   79 (348)
                      |.++|.|  .-|+-|..-. +..+....|+|.|||.+ ++|+|||++.  ..||+-|.|++|.+.+.++++++....+  
T Consensus       251 ~eaTF~G--~ef~~YDls~npI~s~~d~itl~FrT~q-~ngllfytG~--~~dYlnlaL~dGaV~l~~~l~~g~~e~~~~  325 (1591)
T KOG3514|consen  251 GEATFGG--DEFVGYDLSQNPIRSKKDNITLTFRTVQ-GNGLLFYTGD--EKDYLNLALQDGAVSLSSKLDGGDAEIIRM  325 (1591)
T ss_pred             ceEEecC--ceEEEeeccCCcccccccceEEEEEEec-CceeEEEccC--CcceeeEeecCCcEEEEEecCCccceeEEc
Confidence            6789999  5888884422 22467788999999999 9999999998  7899999999999999999988742222  


Q ss_pred             cCceeecCCCcEEEEEEEeCcEEEEEECCeeeeeeeecCCCccccccCCeEEeccCCCCcceeccCccccccceeeeece
Q psy12396         80 SGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNL  159 (348)
Q Consensus        80 ~~~~~~~dg~Wh~v~v~~~~~~~~l~vd~~~~~~~~~~~~~~~l~~~~~~~iGG~~~~~~~~~~~~~~~~~~F~GCi~~l  159 (348)
                      .+..+++|++||+|.|.|+-..+++.||+.........+...-+..+..+|+||.|+....  +   .....|.||++++
T Consensus       326 p~~~rfdD~~WH~V~v~R~~~m~t~~VDg~~t~~~~~a~~~tmlsss~~fyvgg~~~~~~l--~---gsrVsF~GClkkV  400 (1591)
T KOG3514|consen  326 PNSFRFDDDSWHTVIVERSLQMMTLIVDGRRTEIRQYAPELTMLSSSDFFYVGGSPNTADL--P---GSRVSFMGCLKKV  400 (1591)
T ss_pred             cccccccCCcceEEEEEeeeEEEEEEEccEEecccccccceeEeeccceEEecCCCCcccc--C---CCceeeeeeeeee
Confidence            4566999999999999999999999999987555555544444444455899998876432  1   1235599999999


Q ss_pred             EECCEEcCCCC----CC-------CC--cccCCCC-CccceEEecCCeeEEeeecccccceEEEEEEEEeCCCCeEEEEE
Q psy12396        160 KSNNKLVQDKH----TS-------SG--VIPCSDK-TESGVFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSV  225 (348)
Q Consensus       160 ~in~~~~~~~~----~~-------~g--~~~C~~~-~~~~~~f~~~~s~~~~~~~~~~~~~~~i~~~frT~~~~Glll~~  225 (348)
                      ++....+.+..    .+       .|  ...|.+. ...+++|....+|+.+ +.|.....-.|+|.|||++++|+|+|.
T Consensus       401 ~y~~d~~rl~L~~LAk~g~~~~k~~G~l~y~C~n~~~~DpvtFtt~es~l~L-P~Wnt~~~gSiSf~FRTtepnGlil~~  479 (1591)
T KOG3514|consen  401 VYKNDDTRLELSRLAKQGDSKMKTEGDLSYSCENVAQLDPVTFTTPESYLTL-PRWNTKKSGSISFDFRTTEPNGLILFH  479 (1591)
T ss_pred             EeccCceeehhhHHhhcCCceeEeeceEEEecCCCCccCceeeecccceeec-cccccCCcceeEEEEeecCCCceEEEc
Confidence            99665544322    11       12  2578774 3478889888899988 466666778899999999999999998


Q ss_pred             cC----CCCeEEEEEECCEEEEEEECCCcceEEEEcCCCCeeecCCcEEEEEEEEeCCEEEEEEcCCCcccccCCCCCCc
Q psy12396        226 HS----KKDYFILQMIDGSVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSS  301 (348)
Q Consensus       226 ~~----~~~~l~l~l~~G~l~~~~~~~~~~~~~~~~~~s~~~~~dg~wH~v~v~~~~~~~~l~vD~~~~~~~~~~~~~~~  301 (348)
                      .+    ..+|++++|.||+|.+.+++|+|.+.++   .+..+++||+||+|.+.|.++.-.+.||...  ..-.++....
T Consensus       480 ~g~~~~~~d~~A~ELldghlyl~ldlGSG~iklr---as~rkv~DGeWhhv~l~R~gR~gsvsVd~~~--~df~tpG~s~  554 (1591)
T KOG3514|consen  480 GGPQANATDYFAIELLDGHLYLLLDLGSGVIKLR---ASSRKVNDGEWHHVDLQRDGRTGSVSVDAIK--TDFSTPGDSE  554 (1591)
T ss_pred             cCcccccccEEEEEEeCCeEEEEEecCCceEEee---eecccccCCceEEEEeeccCccceEEEeeee--cCccCCCcce
Confidence            75    3799999999999999999999988874   4688999999999999999999999999987  2333467777


Q ss_pred             ccCCCCceEEcccCCCCC-CCCCCCCccccceeeeeecCceeec
Q psy12396        302 ETDTNNAVFIGGHPFLSL-SSKKSGPRTKRRSVFLINANCKAVH  344 (348)
Q Consensus       302 ~~~~~~~l~iGG~~~~~~-~~~~~~~~~~~~F~GCi~~~~~~~~  344 (348)
                      .|...+++|||-.++... ....|.+.-+.+|+||||++....+
T Consensus       555 iL~ld~~mylG~~~n~l~~P~~vWta~L~~GyvGCirdl~i~G~  598 (1591)
T KOG3514|consen  555 ILDLDDPMYLGEVPNNLVYPSEVWTAALRKGYVGCIRDLFIDGV  598 (1591)
T ss_pred             eEeecCceeeccCCCCccCcHHHHHHHHhccchheehhheecce
Confidence            889999999996665531 1222345678899999999987654

>KOG3514|consensus Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG3516|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>smart00282 LamG Laminin G domain Back     alignment and domain information
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>smart00282 LamG Laminin G domain Back     alignment and domain information
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans Back     alignment and domain information
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function [] Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits Back     alignment and domain information
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>KOG1834|consensus Back     alignment and domain information
>KOG3509|consensus Back     alignment and domain information
>KOG3546|consensus Back     alignment and domain information
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A Back     alignment and domain information
>PF07953 Toxin_R_bind_N: Clostridium neurotoxin, N-terminal receptor binding; InterPro: IPR012928 The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1dyk_A394 Laminin Alpha 2 Chain Lg4-5 Domain Pair Length = 39 2e-38
1okq_A394 Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site M 3e-37
2jd4_A383 Mouse Laminin Alpha1 Chain, Domains Lg4-5 Length = 1e-35
1qu0_A191 Crystal Structure Of The Fifth Laminin G-like Modul 2e-18
3qcw_A 1245 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 1e-15
3poy_A 1019 Crystal Structure Of The Alpha-Neurexin-1 Ectodomai 5e-13
3poy_A 1019 Crystal Structure Of The Alpha-Neurexin-1 Ectodomai 6e-04
3r05_A 1254 Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), 6e-13
3sh4_A195 Laminin G Like Domain 3 From Human Perlecan Length 7e-12
3v64_A191 Crystal Structure Of Agrin And Lrp4 Length = 191 5e-10
1pz8_A201 Modulation Of Agrin Function By Alternative Splicin 4e-09
1pz7_A204 Modulation Of Agrin Function By Alternative Splicin 6e-09
1q56_A195 Nmr Structure Of The B0 Isoform Of The Agrin G3 Dom 9e-09
2wjs_A 608 Crystal Structure Of The Lg1-3 Region Of The Lamini 1e-08
3asi_A410 Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns 3e-06
2r16_A182 Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG 1e-05
2r1d_A226 Crystal Structure Of Rat Neurexin 1beta In The Ca2+ 2e-05
3biw_E243 Crystal Structure Of The Neuroligin-1NEUREXIN-1beta 2e-05
3bod_A178 Structure Of Mouse Beta-Neurexin 1 Length = 178 2e-05
3b3q_E197 Crystal Structure Of A Synaptic Adhesion Complex Le 2e-05
1c4r_A182 The Structure Of The Ligand-Binding Domain Of Neure 2e-05
2wqz_C179 Crystal Structure Of Synaptic Protein Neuroligin-4 2e-05
3vkf_C181 Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COM 3e-05
3mw2_A207 Crystal Structure Of Beta-Neurexin 1 With The Splic 5e-05
2r1b_A220 Crystal Structure Of Rat Neurexin 1beta With A Spli 5e-05
1d2s_A170 Crystal Structure Of The N-Terminal Laminin G-Like 1e-04
2h0b_A184 Crystal Structure Of The Second LnsLG DOMAIN FROM N 1e-04
3mw4_A178 Crystal Structure Of Beta-Neurexin 3 Without The Sp 2e-04
1f5f_A205 Crystal Structure Of The N-Terminal G-Domain Of Shb 3e-04
3pve_A189 Crystal Structure Of The G2 Domain Of Agrin From Mu 4e-04
3bop_A175 Structure Of Mouse Beta-neurexin 2d4 Length = 175 5e-04
1lhn_A189 Crystal Structure Of The N-Terminal Lg-Domain Of Sh 6e-04
1kdk_A177 The Structure Of The N-Terminal Lg Domain Of Shbg I 8e-04
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair Length = 394 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 168/313 (53%), Gaps = 14/313 (4%)
Query: 8   GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
           G S++S I       + KN+    ++++T +E  G++FY+A + H D+  + +++G  ++
Sbjct: 39  GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAES-GLLFYMARINHADFATVQLRNGFPYF 97
Query: 68  SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
           S++ GSG  +     K I DG+WH ++  R +  G L +D    ++  S   +  L++ G
Sbjct: 98  SYDLGSGDTSTMIPTK-INDGQWHKIKIVRVKQEGILYVD-DASSQTISPKKADILDVVG 155
Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLVQ-DKHTSS-GVIPCSDKTESG 185
             Y+GG+P+N +T   G +    +  GC+RNL      V  D+ TSS  V  C    ESG
Sbjct: 156 ILYVGGLPINYTTRRIGPVTY--SLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESG 213
Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGSVKAT 244
            +F +  G+ K V  F+VG ++ ++ + +    +G+LL V S+K D   ++MID  +   
Sbjct: 214 TYF-DGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQKMDGMGIEMIDEKLMFH 272
Query: 245 VDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSET- 303
           VDNG G  +AIY    P   C+GQWH + A K KN + + VD    D      P S+ T 
Sbjct: 273 VDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQS---PNSASTS 329
Query: 304 -DTNNAVFIGGHP 315
            DTN+ VF+GG P
Sbjct: 330 ADTNDPVFVGGFP 342
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant Length = 394 Back     alignment and structure
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5 Length = 383 Back     alignment and structure
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of The Mouse Laminin Alpha2 Chain Length = 191 Back     alignment and structure
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245 Back     alignment and structure
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019 Back     alignment and structure
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019 Back     alignment and structure
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254 Back     alignment and structure
>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan Length = 195 Back     alignment and structure
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4 Length = 191 Back     alignment and structure
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 201 Back     alignment and structure
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 204 Back     alignment and structure
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In Its Ca2+ Bound State Length = 195 Back     alignment and structure
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin Alpha2 Chain Length = 608 Back     alignment and structure
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6 Length = 410 Back     alignment and structure
>pdb|2R16|A Chain A, Crystal Structure Of Bovine Neurexin 1 Alpha LnsLG DOMAIN 4 (With No Splice Insert) Length = 182 Back     alignment and structure
>pdb|2R1D|A Chain A, Crystal Structure Of Rat Neurexin 1beta In The Ca2+ Containing Form Length = 226 Back     alignment and structure
>pdb|3BIW|E Chain E, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta Synaptic Adhesion Complex Length = 243 Back     alignment and structure
>pdb|3BOD|A Chain A, Structure Of Mouse Beta-Neurexin 1 Length = 178 Back     alignment and structure
>pdb|3B3Q|E Chain E, Crystal Structure Of A Synaptic Adhesion Complex Length = 197 Back     alignment and structure
>pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin 1beta: Regulation Of Lns Domain Function By Alternative Splicing Length = 182 Back     alignment and structure
>pdb|2WQZ|C Chain C, Crystal Structure Of Synaptic Protein Neuroligin-4 In Complex With Neurexin-beta 1: Alternative Refinement Length = 179 Back     alignment and structure
>pdb|3VKF|C Chain C, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX Length = 181 Back     alignment and structure
>pdb|3MW2|A Chain A, Crystal Structure Of Beta-Neurexin 1 With The Splice Insert 4 Length = 207 Back     alignment and structure
>pdb|2R1B|A Chain A, Crystal Structure Of Rat Neurexin 1beta With A Splice Insert At Ss#4 Length = 220 Back     alignment and structure
>pdb|1D2S|A Chain A, Crystal Structure Of The N-Terminal Laminin G-Like Domain Of Shbg In Complex With Dihydrotestosterone Length = 170 Back     alignment and structure
>pdb|2H0B|A Chain A, Crystal Structure Of The Second LnsLG DOMAIN FROM NEUREXIN 1 ALPHA Length = 184 Back     alignment and structure
>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice Insert 4 Length = 178 Back     alignment and structure
>pdb|1F5F|A Chain A, Crystal Structure Of The N-Terminal G-Domain Of Shbg In Complex With Zinc Length = 205 Back     alignment and structure
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus Musculus Length = 189 Back     alignment and structure
>pdb|3BOP|A Chain A, Structure Of Mouse Beta-neurexin 2d4 Length = 175 Back     alignment and structure
>pdb|1LHN|A Chain A, Crystal Structure Of The N-Terminal Lg-Domain Of Shbg In Complex With 5alpha-Androstane-3beta,17alpha-Diol Length = 189 Back     alignment and structure
>pdb|1KDK|A Chain A, The Structure Of The N-Terminal Lg Domain Of Shbg In Crystals Soaked With Edta Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 8e-82
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 2e-26
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 2e-14
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 1e-79
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 6e-26
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 1e-15
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 1e-55
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 3e-13
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 2e-54
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 9e-48
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 2e-21
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 2e-52
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 2e-24
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 1e-14
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 2e-47
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 2e-46
3qcw_A1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 6e-46
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 1e-45
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 4e-39
3qcw_A1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 8e-26
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 1e-11
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 2e-42
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 2e-15
3v64_A191 Low-density lipoprotein receptor-related protein; 3e-42
3v64_A191 Low-density lipoprotein receptor-related protein; 6e-17
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 3e-42
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 5e-17
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 4e-40
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 2e-15
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 6e-36
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 5e-14
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 1e-35
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 5e-12
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 2e-35
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 4e-17
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 3e-34
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 2e-21
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 2e-29
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 5e-14
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 3e-28
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 6e-12
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 8e-25
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 4e-09
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 8e-06
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 1e-05
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 2e-05
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 3e-05
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
 Score =  252 bits (646), Expect = 8e-82
 Identities = 88/311 (28%), Positives = 158/311 (50%), Gaps = 8/311 (2%)

Query: 8   GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
           G S++S +  P      + +    + I+T +   G+I+YVA    +DY  L +++G++H+
Sbjct: 25  GLSQNSHLVLPLQQSDVRKRLQVQLSIRTFAS-SGLIYYVAHQNQMDYATLQLQEGRLHF 83

Query: 68  SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
            F+ G G   +S    L+ DG+WHTV+    +    + +DGQ        G + TL++  
Sbjct: 84  MFDLGKGRTKVSHP-ALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVER 142

Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV--QDKHTSSGVIPCSDKTESG 185
             YLGG+P  +    R    +  +   C+  +  N + +      ++S V  C    + G
Sbjct: 143 KLYLGGLP--SHYRARNIGTITHSIPACIGEIMVNGQQLDKDRPLSASAVDRCYVVAQEG 200

Query: 186 VFFYNSGGYVKGVEQFRVGREMELKMDVKPRNISGLLLSVHSKK-DYFILQMIDGSVKAT 244
            FF  SG      E ++V  ++++ ++ +  + +G+LL + S K D   L+++DG V   
Sbjct: 201 TFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSAKVDAIGLEIVDGKVLFH 260

Query: 245 VDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETD 304
           V+NG G I+A Y P      CDG+WHT+ A K+K+ I + VD   + +       S+  D
Sbjct: 261 VNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDG-NSVRAESPHTHSTSAD 319

Query: 305 TNNAVFIGGHP 315
           TN+ +++GG+P
Sbjct: 320 TNDPIYVGGYP 330
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394 Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422 Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245 Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205 Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205 Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191 Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191 Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204 Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204 Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189 Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189 Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170 Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170 Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182 Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182 Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195 Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195 Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184 Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184 Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178 Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178 Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226 Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226 Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220 Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Length = 217 Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Length = 209 Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Length = 191 Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Length = 251 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
2jd4_A383 Laminin subunit alpha-1; basement membrane protein 100.0
1dyk_A394 Laminin alpha 2 chain; metal binding protein; 2.0A 100.0
1h30_A422 GAS6, growth-arrest-specific protein; laminin G-do 100.0
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 100.0
2wjs_A608 Laminin subunit alpha-2; integrin, secreted, coile 100.0
2wjs_A 608 Laminin subunit alpha-2; integrin, secreted, coile 100.0
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 100.0
3qcw_A 1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 100.0
3v64_A191 Low-density lipoprotein receptor-related protein; 99.97
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 99.97
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 99.97
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 99.97
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 99.96
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 99.96
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 99.96
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 99.95
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 99.95
3v64_A191 Low-density lipoprotein receptor-related protein; 99.94
2h0b_A184 Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A 99.94
1pz7_A204 Agrin; structural protein; 1.42A {Gallus gallus} S 99.93
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.93
3sh4_A195 LG3 peptide; actin disassambly, integrin alpha12 B 99.93
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.93
3pve_A189 Agrin, AGRN protein; mRNA splicing, structural gen 99.93
3bod_A178 Neurexin-1-alpha; neurexin1D, LNS6, alternative sp 99.92
1d2s_A170 SHBG, sex hormone-binding globulin; steroid transp 99.92
2r16_A182 Neurexin-1-alpha; beta-sandwich, cell adhesion, sp 99.92
1f5f_A205 SHBG, sex hormone-binding globulin; jellyroll, sig 99.9
2r1b_A220 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.9
2r1d_A226 Neurexin-1-beta, neurexin I-beta; beta-sandwich, c 99.9
2jd4_A 383 Laminin subunit alpha-1; basement membrane protein 99.89
3asi_A 410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 99.89
1dyk_A 394 Laminin alpha 2 chain; metal binding protein; 2.0A 99.88
1h30_A 422 GAS6, growth-arrest-specific protein; laminin G-do 99.87
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 98.52
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 98.46
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 98.45
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 98.44
2v73_A191 CBM40, putative EXO-alpha-sialidase; carbohydrate- 98.43
3kqr_A204 Serum amyloid P-component; glycoprotein, disulfide 98.41
3pvn_A206 C-reactive protein; pentraxin family, immune syste 98.4
3pvn_A206 C-reactive protein; pentraxin family, immune syste 98.38
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 98.36
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 98.35
2erf_A209 Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug 98.32
1za4_A251 Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel 98.31
2uur_A245 Collagen alpha-1(IX) chain; glycoprotein, hydroxyl 98.11
4dqa_A355 Uncharacterized protein; two domains structure, DU 97.98
2uur_A245 Collagen alpha-1(IX) chain; glycoprotein, hydroxyl 97.9
4dqa_A355 Uncharacterized protein; two domains structure, DU 97.59
1a8d_A452 Tetanus neurotoxin; clostridial, ganglioside bindi 97.06
1a8d_A 452 Tetanus neurotoxin; clostridial, ganglioside bindi 96.96
2sli_A 679 Intramolecular trans-sialidase; hydrolase, neurami 96.82
2jkb_A 686 Sialidase B; intramolecular trans-sialidase, lyase 96.79
2jkb_A 686 Sialidase B; intramolecular trans-sialidase, lyase 96.7
2sli_A 679 Intramolecular trans-sialidase; hydrolase, neurami 96.68
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 96.38
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 96.23
1epw_A 1290 Bontoxilysin B, botulinum neurotoxin type B; zinc, 92.45
2nyy_A 1295 Botulinum neurotoxin type A; neurotoxin, FAB, prot 91.95
1epw_A1290 Bontoxilysin B, botulinum neurotoxin type B; zinc, 91.17
2nyy_A1295 Botulinum neurotoxin type A; neurotoxin, FAB, prot 90.67
3v0a_B 1196 NTNH; botulinum neurotoxin, toxin, neurotoxin asso 89.68
4azz_A172 Levanase; hydrolase; 1.70A {Bacillus subtilis} 88.92
3v0a_B1196 NTNH; botulinum neurotoxin, toxin, neurotoxin asso 87.87
3zr5_A656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 87.23
2gy5_A423 Angiopoietin-1 receptor; ligand-binding domain, tr 86.65
3rsj_A413 BONT/F; clostridium botulinum type F, ganglioside 86.32
4azz_A172 Levanase; hydrolase; 1.70A {Bacillus subtilis} 86.25
3zr5_A656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 85.44
3rsj_A 413 BONT/F; clostridium botulinum type F, ganglioside 80.11
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=6.8e-55  Score=408.39  Aligned_cols=333  Identities=27%  Similarity=0.489  Sum_probs=266.2

Q ss_pred             eeEeCCCCeeeEEecCCcCcccceEEEEEEEEcCCCCCeEEEEEecCCCCcEEEEEEeCcEEEEEEEcCCCCceeecCce
Q psy12396          4 YVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDK   83 (348)
Q Consensus         4 ~~~F~g~~~sy~~~~~~~~~~~~~~~i~~~FrT~~~~~GlLl~~~~~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~~~~~   83 (348)
                      .++|+++++||++|+..+.......+|+|+|||.+ ++|+|||.++....||++|+|.+|+|+++++.|++ ...+.++.
T Consensus        21 a~~Fg~~~~S~~~~~~~~~~~~~~~~is~~frT~~-~~GlLly~~~~~~~d~~~l~L~~G~l~~~~~~g~~-~~~~~~~~   98 (383)
T 2jd4_A           21 AHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFA-SSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKG-RTKVSHPA   98 (383)
T ss_dssp             CEECCSSTTCEEEEECCSCCCSSEEEEEEEEEECC-SCEEEEEEECTTSSSEEEEEEETTEEEEEEECSSC-EEEEECCC
T ss_pred             ccccCCCCCeeEEEeCCchhcccceEEEEEEEcCC-CCeEEEEeCCCCCCcEEEEEEECCEEEEEEECCCC-eEEEeCcc
Confidence            37899988999999864444467899999999999 99999999875567999999999999999999998 67778889


Q ss_pred             eecCCCcEEEEEEEeCcEEEEEECCeeeeeeeecCCCccccccCCeEEeccCCCCcceeccCccccccceeeeeceEECC
Q psy12396         84 LILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNN  163 (348)
Q Consensus        84 ~~~dg~Wh~v~v~~~~~~~~l~vd~~~~~~~~~~~~~~~l~~~~~~~iGG~~~~~~~~~~~~~~~~~~F~GCi~~l~in~  163 (348)
                      .++||+||+|++.|..+.+.|.||++.......++....++....+||||+|......  .......+|.|||+++.+|+
T Consensus        99 ~~~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~~~~l~~~~~l~vGG~p~~~~~~--~~~~~~~~F~GCi~~l~in~  176 (383)
T 2jd4_A           99 LLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRAR--NIGTITHSIPACIGEIMVNG  176 (383)
T ss_dssp             CCTTSSCEEEEEEEETTEEEEEETTEECCCEECCSSCCCCCCCSEEEESSCCTTCCCC--SSCSCCSBCCEEEEEEEETT
T ss_pred             eecCCCcEEEEEEEeCCEEEEEEcCccccceecCCCcceecCCCCeEEeccCcccccc--cccccCCCceEEeEEEEECC
Confidence            9999999999999999999999999885555555555667777899999999753221  11124578999999999999


Q ss_pred             EEcCCCCC--CCCcccCCCCCccceEEecCCeeEEee-ecccccceEEEEEEEEeCCCCeEEEEEcC-CCCeEEEEEECC
Q psy12396        164 KLVQDKHT--SSGVIPCSDKTESGVFFYNSGGYVKGV-EQFRVGREMELKMDVKPRNISGLLLSVHS-KKDYFILQMIDG  239 (348)
Q Consensus       164 ~~~~~~~~--~~g~~~C~~~~~~~~~f~~~~s~~~~~-~~~~~~~~~~i~~~frT~~~~Glll~~~~-~~~~l~l~l~~G  239 (348)
                      +.+++...  ..++..|....+.+.+|. +.+|+.+. ..+......+|+|.|||++++|+|||..+ ..+|++|+|.+|
T Consensus       177 ~~l~l~~~~~~~~~~~C~~~~~~g~~F~-g~sy~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~d~l~l~L~~G  255 (383)
T 2jd4_A          177 QQLDKDRPLSASAVDRCYVVAQEGTFFE-GSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISSAKVDAIGLEIVDG  255 (383)
T ss_dssp             EECCTTSCSEEESCBCCBSSEESSEEEE-EEEEEEEEEEEECCBSCEEEEEEEEESCSCEEEEEEECSSSCEEEEEEETT
T ss_pred             EEeccCCccccCccccccCcCccCceEC-CCeEEEEecCccccCCceEEEEEEEeCCCCEEEEEecCCCCcEEEEEEECC
Confidence            99876432  235678988888899996 57999984 44555567899999999999999999865 479999999999


Q ss_pred             EEEEEEECCCcceEEEEcCCCCeeecCCcEEEEEEEEeCCEEEEEEcCCCcccccCCCCCCcccCCCCceEEcccCCCCC
Q psy12396        240 SVKATVDNGKGPISAIYTPSDPYFFCDGQWHTIVAIKTKNVISVAVDSMTTDKPGLGPPGSSETDTNNAVFIGGHPFLSL  319 (348)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~s~~~~~dg~wH~v~v~~~~~~~~l~vD~~~~~~~~~~~~~~~~~~~~~~l~iGG~~~~~~  319 (348)
                      +|++.++.+.+...+.+...+...+|||+||+|++.|.++.++|.||+.. ............++....+||||.|... 
T Consensus       256 ~l~~~~~~g~g~~~~~~~~~~~~~l~DG~WH~V~l~~~~~~~~L~VD~~~-~~~~~~~~~~~~l~~~~~lylGG~p~~~-  333 (383)
T 2jd4_A          256 KVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNS-VRAESPHTHSTSADTNDPIYVGGYPAHI-  333 (383)
T ss_dssp             EEEEEEESSSCEEEEEECCSSTTGGGSSSCEEEEEEEETTEEEEEETTEE-EEEC----CCCCBCCCEEEEESCCCTTS-
T ss_pred             EEEEEEECCCCcEEEEEecCCCccccCCCcEEEEEEEcCCEEEEEECCee-cccccCCCCcccccCCCCEEEecccccc-
Confidence            99999999887665533222356799999999999999999999999987 3332222233456777789999999874 


Q ss_pred             CCCCCCCccccceeeeeecCceeecc
Q psy12396        320 SSKKSGPRTKRRSVFLINANCKAVHP  345 (348)
Q Consensus       320 ~~~~~~~~~~~~F~GCi~~~~~~~~~  345 (348)
                        .........+|+|||+++..+.+|
T Consensus       334 --~~~~~~~~~~F~GCi~~v~in~~~  357 (383)
T 2jd4_A          334 --KQNSLSSRASFRGCVRNLRLSRGS  357 (383)
T ss_dssp             --CCTTCSCCCBCEEEEEEEEEC---
T ss_pred             --ccCCccccCCCceEccEEEECCCC
Confidence              334456678999999999998765
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Back     alignment and structure
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Back     alignment and structure
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Back     alignment and structure
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Back     alignment and structure
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Back     alignment and structure
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Back     alignment and structure
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Back     alignment and structure
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Back     alignment and structure
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Back     alignment and structure
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Back     alignment and structure
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Back     alignment and structure
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Back     alignment and structure
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Back     alignment and structure
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens} Back     alignment and structure
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A* Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Back     alignment and structure
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A Back     alignment and structure
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A Back     alignment and structure
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens} Back     alignment and structure
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus} Back     alignment and structure
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Back     alignment and structure
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 2nm1_A 3g94_A 1f82_A ... Back     alignment and structure
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A Back     alignment and structure
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 2nm1_A 3g94_A 1f82_A ... Back     alignment and structure
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A Back     alignment and structure
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B Back     alignment and structure
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis} Back     alignment and structure
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Back     alignment and structure
>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} PDB: 3fuq_A Back     alignment and structure
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis} Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} PDB: 3fuq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1dyka1189 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse 8e-30
d1dyka1189 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse 7e-13
d1d2sa_170 b.29.1.4 (A:) Sex hormone-binding globulin {Human 6e-27
d1d2sa_170 b.29.1.4 (A:) Sex hormone-binding globulin {Human 1e-09
d1pz7a_195 b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI 2e-26
d1pz7a_195 b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI 8e-10
d1h30a1191 b.29.1.4 (A:261-451) Growth-arrest-specific protei 1e-24
d1h30a1191 b.29.1.4 (A:261-451) Growth-arrest-specific protei 7e-10
d1dyka2185 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse 5e-24
d1dyka2185 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse 2e-22
d2r1da1177 b.29.1.4 (A:36-212) Ligand-binding domain of neure 3e-18
d2r1da1177 b.29.1.4 (A:36-212) Ligand-binding domain of neure 2e-09
d1h30a2218 b.29.1.4 (A:461-678) Growth-arrest-specific protei 1e-13
d1h30a2218 b.29.1.4 (A:461-678) Growth-arrest-specific protei 2e-13
d2erfa1206 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal do 6e-09
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 8e-30
 Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 7/174 (4%)

Query: 8   GTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHY 67
           G S++S I       + KN+    ++++T +E  G++FY+A + H D+  + +++G  ++
Sbjct: 20  GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAE-SGLLFYMARINHADFATVQLRNGFPYF 78

Query: 68  SFNCGSGPMALSSGDKLILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFG 127
           S++ GSG  +     K+  DG+WH ++  R +  G L +D     +  S   +  L++ G
Sbjct: 79  SYDLGSGDTSTMIPTKIN-DGQWHKIKIVRVKQEGILYVDDASS-QTISPKKADILDVVG 136

Query: 128 PFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNNKLV--QDKHTSSGVIPCS 179
             Y+GG+P+N +T   G   +  +  GC+RNL      V      +S  V  C 
Sbjct: 137 ILYVGGLPINYTTRRIGP--VTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCF 188
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189 Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195 Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195 Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185 Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185 Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177 Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.97
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.96
d1pz7a_195 Agrin {Chicken (Gallus gallus) [TaxId: 9031]} 99.95
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 99.94
d1dyka2185 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.94
d1dyka1189 Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 99.94
d1h30a1191 Growth-arrest-specific protein Gas6 {Human (Homo s 99.93
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 99.93
d1pz7a_195 Agrin {Chicken (Gallus gallus) [TaxId: 9031]} 99.92
d2r1da1177 Ligand-binding domain of neurexin 1beta {Rat (Ratt 99.91
d1d2sa_170 Sex hormone-binding globulin {Human (Homo sapiens) 99.9
d1h30a1191 Growth-arrest-specific protein Gas6 {Human (Homo s 99.89
d1h30a2218 Growth-arrest-specific protein Gas6 {Human (Homo s 99.85
d1h30a2218 Growth-arrest-specific protein Gas6 {Human (Homo s 99.85
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 98.82
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 98.67
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 98.59
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 98.55
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 98.36
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 98.17
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 97.95
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 97.91
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 97.89
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 97.82
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 97.81
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 97.76
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 97.55
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 97.39
d2ah2a1225 Trypanosoma sialidase, C-terminal domain {Parasiti 88.75
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 85.66
d1n1ta1222 Trypanosoma sialidase, C-terminal domain {Trypanos 83.86
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.6e-31  Score=219.44  Aligned_cols=171  Identities=26%  Similarity=0.479  Sum_probs=141.0

Q ss_pred             eeEeCCCCeeeEEecCCcCcccceEEEEEEEEcCCCCCeEEEEEecCCCCcEEEEEEeCcEEEEEEEcCCCCceeecCce
Q psy12396          4 YVIAGTSKSSRIEYPTITGRFKNKFDFSIDIKTTSEQDGIIFYVADVKHIDYVALYVKDGQIHYSFNCGSGPMALSSGDK   83 (348)
Q Consensus         4 ~~~F~g~~~sy~~~~~~~~~~~~~~~i~~~FrT~~~~~GlLl~~~~~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~~~~~   83 (348)
                      ..+|+++.+||+.++..+.......+|+|+|||.+ ++|+|||.+.....+|++|+|.+|+|++.++.|++ ...+..+.
T Consensus        16 ~~~fg~s~~s~~~~~~~~~~~~~~~~i~~~frT~~-~~GlL~~~~~~~~~dfi~l~l~~G~l~~~~~~g~~-~~~~~~~~   93 (189)
T d1dyka1          16 SKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEA-ESGLLFYMARINHADFATVQLRNGFPYFSYDLGSG-DTSTMIPT   93 (189)
T ss_dssp             CEECCSSTTCEEEEECCGGGGSSEEEEEEEEEECC-SCEEEEEEECTTSSSEEEEEEETTEEEEEEESSSC-EEEEECCS
T ss_pred             ceecCCCCCceEEEecCcccccccEEEEEEEEECC-CCEEEEEEcCCCCCcEEEEEEECCEEEEEEECCCc-cEEecCCc
Confidence            46899999999999875555678899999999999 99999999876677999999999999999999988 77777888


Q ss_pred             eecCCCcEEEEEEEeCcEEEEEECCeeeeeeeecCCCccccccCCeEEeccCCCCcceeccCccccccceeeeeceEECC
Q psy12396         84 LILDGEWHTVEFSRQQLSGKLKIDGQVVAEGESKGSSKTLNIFGPFYLGGVPLNTSTLVRGNLGLNDTFVGCLRNLKSNN  163 (348)
Q Consensus        84 ~~~dg~Wh~v~v~~~~~~~~l~vd~~~~~~~~~~~~~~~l~~~~~~~iGG~~~~~~~~~~~~~~~~~~F~GCi~~l~in~  163 (348)
                      .++||+||+|.+.+.++.+.|.||+... ....+.....++....+||||+|........  .....+|.|||+++++|+
T Consensus        94 ~v~Dg~WH~V~v~~~~~~~~l~VD~~~~-~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~--~~~~~~F~GCi~~v~in~  170 (189)
T d1dyka1          94 KINDGQWHKIKIVRVKQEGILYVDDASS-QTISPKKADILDVVGILYVGGLPINYTTRRI--GPVTYSLDGCVRNLHMEQ  170 (189)
T ss_dssp             CCCSSSCEEEEEEEETTEEEEEETTEEE-EEECSTTCCCCCCCSEEEESSCCTTCCCCSS--CSCCSBCSEEEEEEEESS
T ss_pred             EeeCCCEEEEEEEEcccEEEEEECCcce-eeEccCcccccccccceEEeccccccccccc--CcCCCCcEEEEeEEEECC
Confidence            9999999999999999999999999773 3334445556677778999999976443211  224568999999999999


Q ss_pred             EEcCCCC--CCCCcccCC
Q psy12396        164 KLVQDKH--TSSGVIPCS  179 (348)
Q Consensus       164 ~~~~~~~--~~~g~~~C~  179 (348)
                      +.+++..  ...++.+|.
T Consensus       171 ~~~~L~~~~~~~~V~~Cf  188 (189)
T d1dyka1         171 APVDLDQPTSSFHVGTCF  188 (189)
T ss_dssp             SCCCTTSCSEEESCBCCB
T ss_pred             EEecCCCcccCCCccCcc
Confidence            9887643  345778885
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal domain {Trypanosoma rangeli [TaxId: 5698]} Back     information, alignment and structure