Psyllid ID: psy12571


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MCIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKK
cccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHccccccccccccHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
ccEEEHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEcccccHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHcccccHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHcc
mciamckslsgltktqldlcykhpevtSVALRGLRLAVEECQHQfhknrwncsslitknsnphtsslLKKFSIVSSIHWSTKYASDLQARGIAMCKSLsgltktqldlcykhpevtSVALRGLRLAVEECQHQfhknrwncsslitknsnphtssllkk
MCIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFhknrwncsslitknsnphtssllkk
MCIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKK
**IAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLI**************
MCIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLL**
MCIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNS**********
MCIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHT******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query159 2.2.26 [Sep-21-2011]
P43446 442 Protein Wnt-10a OS=Danio yes N/A 0.415 0.149 0.5 4e-15
O00744 389 Protein Wnt-10b OS=Homo s yes N/A 0.534 0.218 0.458 1e-14
P48614 389 Protein Wnt-10b OS=Mus mu yes N/A 0.534 0.218 0.458 2e-14
P70701 417 Protein Wnt-10a OS=Mus mu no N/A 0.415 0.158 0.439 2e-14
Q9GZT5 417 Protein Wnt-10a OS=Homo s no N/A 0.415 0.158 0.439 3e-14
Q801F7 427 Protein Wnt-10b OS=Danio no N/A 0.603 0.224 0.402 3e-14
P49337 351 Protein Wnt-4 OS=Gallus g no N/A 0.327 0.148 0.480 1e-08
P47793 352 Protein Wnt-4a OS=Danio r no N/A 0.314 0.142 0.46 2e-08
P22724 351 Protein Wnt-4 OS=Mus musc no N/A 0.314 0.142 0.48 2e-08
P56705 351 Protein Wnt-4 OS=Homo sap no N/A 0.314 0.142 0.48 2e-08
>sp|P43446|WN10A_DANRE Protein Wnt-10a OS=Danio rerio GN=wnt10a PE=2 SV=1 Back     alignment and function desciption
 Score = 80.5 bits (197), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 51/66 (77%)

Query: 5   MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHT 64
           +C +L GLTK QLD+C ++P+VT+ A++G+++A+ ECQHQF  +RWNCSSL T+N  P+ 
Sbjct: 97  VCLTLPGLTKKQLDVCMRNPDVTASAIQGIQIAIHECQHQFRGHRWNCSSLETRNKIPYE 156

Query: 65  SSLLKK 70
           S +  +
Sbjct: 157 SVVFSR 162




Ligand for members of the frizzled family of seven transmembrane receptors. Probable developmental protein. May be a signaling molecule important in CNS development. Is likely to signal over only few cell diameters.
Danio rerio (taxid: 7955)
>sp|O00744|WN10B_HUMAN Protein Wnt-10b OS=Homo sapiens GN=WNT10B PE=1 SV=2 Back     alignment and function description
>sp|P48614|WN10B_MOUSE Protein Wnt-10b OS=Mus musculus GN=Wnt10b PE=2 SV=1 Back     alignment and function description
>sp|P70701|WN10A_MOUSE Protein Wnt-10a OS=Mus musculus GN=Wnt10a PE=2 SV=1 Back     alignment and function description
>sp|Q9GZT5|WN10A_HUMAN Protein Wnt-10a OS=Homo sapiens GN=WNT10A PE=1 SV=1 Back     alignment and function description
>sp|Q801F7|WN10B_DANRE Protein Wnt-10b OS=Danio rerio GN=wnt10b PE=2 SV=1 Back     alignment and function description
>sp|P49337|WNT4_CHICK Protein Wnt-4 OS=Gallus gallus GN=WNT4 PE=1 SV=1 Back     alignment and function description
>sp|P47793|WNT4A_DANRE Protein Wnt-4a OS=Danio rerio GN=wnt4a PE=2 SV=1 Back     alignment and function description
>sp|P22724|WNT4_MOUSE Protein Wnt-4 OS=Mus musculus GN=Wnt4 PE=1 SV=1 Back     alignment and function description
>sp|P56705|WNT4_HUMAN Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
321475425 368 putative secreted signaling factor WNT10 0.528 0.228 0.477 3e-17
157106153 386 Wnt10a protein, putative [Aedes aegypti] 0.421 0.173 0.597 9e-17
194762239 424 GF15854 [Drosophila ananassae] gi|190616 0.433 0.162 0.623 1e-16
195387784 449 GJ20870 [Drosophila virilis] gi|19414902 0.433 0.153 0.623 1e-16
194862834 553 GG10471 [Drosophila erecta] gi|190662013 0.433 0.124 0.623 1e-16
195577269 481 GD23462 [Drosophila simulans] gi|1941905 0.433 0.143 0.623 1e-16
195338893 480 GM16392 [Drosophila sechellia] gi|194129 0.433 0.143 0.623 1e-16
320544617 483 Wnt oncogene analog 10 [Drosophila melan 0.433 0.142 0.623 1e-16
195147116 460 GL18902 [Drosophila persimilis] gi|19410 0.433 0.15 0.608 2e-16
195437972 457 GK24299 [Drosophila willistoni] gi|19416 0.433 0.150 0.608 3e-16
>gi|321475425|gb|EFX86388.1| putative secreted signaling factor WNT10 [Daphnia pulex] Back     alignment and taxonomy information
 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 63/90 (70%), Gaps = 6/90 (6%)

Query: 4   AMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPH 63
           A+CK+  GL+K QL+LC+++P+V S A+ GL+LAV ECQ QF K+RWNCS+L  KN NPH
Sbjct: 49  AICKNFPGLSKKQLELCFRYPDVMSAAIGGLQLAVNECQFQFQKHRWNCSALDRKNRNPH 108

Query: 64  TSSLLKKFSIVSSIHWSTKYASDLQARGIA 93
           +S+ L+K       +  T +A  + + G+A
Sbjct: 109 SSNFLQK------GYRETAFAYAVSSAGVA 132




Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106153|ref|XP_001649191.1| Wnt10a protein, putative [Aedes aegypti] gi|108884127|gb|EAT48352.1| AAEL000600-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|194762239|ref|XP_001963262.1| GF15854 [Drosophila ananassae] gi|190616959|gb|EDV32483.1| GF15854 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195387784|ref|XP_002052572.1| GJ20870 [Drosophila virilis] gi|194149029|gb|EDW64727.1| GJ20870 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194862834|ref|XP_001970146.1| GG10471 [Drosophila erecta] gi|190662013|gb|EDV59205.1| GG10471 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195577269|ref|XP_002078495.1| GD23462 [Drosophila simulans] gi|194190504|gb|EDX04080.1| GD23462 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195338893|ref|XP_002036058.1| GM16392 [Drosophila sechellia] gi|194129938|gb|EDW51981.1| GM16392 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|320544617|ref|NP_609109.3| Wnt oncogene analog 10 [Drosophila melanogaster] gi|318068329|gb|AAF52503.3| Wnt oncogene analog 10 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195147116|ref|XP_002014526.1| GL18902 [Drosophila persimilis] gi|194106479|gb|EDW28522.1| GL18902 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195437972|ref|XP_002066911.1| GK24299 [Drosophila willistoni] gi|194162996|gb|EDW77897.1| GK24299 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query159
FB|FBgn0031903 432 Wnt10 "Wnt oncogene analog 10" 0.779 0.287 0.409 4e-19
UNIPROTKB|F1SPM9 389 WNT10B "Protein Wnt" [Sus scro 0.597 0.244 0.443 2e-16
UNIPROTKB|F1NZU4 370 WNT10A "Protein Wnt" [Gallus g 0.415 0.178 0.5 5e-16
UNIPROTKB|F1P4W5 402 WNT10A "Protein Wnt" [Gallus g 0.415 0.164 0.5 6.7e-16
ZFIN|ZDB-GENE-980526-524 427 wnt10b "wingless-type MMTV int 0.603 0.224 0.402 6.1e-15
UNIPROTKB|E2RTD3 523 WNT10B "Protein Wnt" [Canis lu 0.597 0.181 0.443 1e-15
UNIPROTKB|B5MCC8173 WNT10B "Protein Wnt" [Homo sap 0.597 0.549 0.443 1.6e-15
UNIPROTKB|Q4VAJ4191 WNT10B "Protein Wnt" [Homo sap 0.597 0.497 0.443 1.6e-15
ZFIN|ZDB-GENE-990415-278 442 wnt10a "wingless-type MMTV int 0.415 0.149 0.5 2.4e-15
UNIPROTKB|C9J3H3132 WNT10B "Protein Wnt" [Homo sap 0.415 0.5 0.530 3.3e-15
FB|FBgn0031903 Wnt10 "Wnt oncogene analog 10" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 234 (87.4 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 54/132 (40%), Positives = 81/132 (61%)

Query:     4 AMCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPH 63
             A C+S+ GLTK Q++LCYK  +VT+ AL GL +A+ ECQ QF  +RWNCSSL TK+ NPH
Sbjct:    23 ATCRSVPGLTKDQVELCYKASDVTAAALEGLDMAIRECQIQFQWHRWNCSSLSTKSRNPH 82

Query:    64 TSSLLKKFSIVSSIHWSTKYASDLQARGIAMCKSLSGLTKTQLDLCYKHPEVTSVAL-RG 122
              SSLLKK       +  + +A  + A G+A   + +  ++ +L  C   P +    L + 
Sbjct:    83 ASSLLKKG------YRESAFAFAISAAGVAHSVARA-CSQGRLMSCGCDPTINRKTLNKN 135

Query:   123 LRLAVEECQHQF 134
             LR ++++ + QF
Sbjct:   136 LRQSLDKEKKQF 147


GO:0005102 "receptor binding" evidence=ISS
GO:0005576 "extracellular region" evidence=ISS
GO:0016055 "Wnt receptor signaling pathway" evidence=ISS
GO:0001664 "G-protein coupled receptor binding" evidence=IBA
GO:0001737 "establishment of imaginal disc-derived wing hair orientation" evidence=IBA
GO:0009798 "axis specification" evidence=IBA
GO:0005886 "plasma membrane" evidence=IBA
GO:0009952 "anterior/posterior pattern specification" evidence=IBA
GO:0008585 "female gonad development" evidence=IBA
GO:0005615 "extracellular space" evidence=IBA
GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IBA
GO:0007435 "salivary gland morphogenesis" evidence=IBA
GO:0042067 "establishment of ommatidial planar polarity" evidence=IBA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IBA
UNIPROTKB|F1SPM9 WNT10B "Protein Wnt" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZU4 WNT10A "Protein Wnt" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4W5 WNT10A "Protein Wnt" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-524 wnt10b "wingless-type MMTV integration site family, member 10b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTD3 WNT10B "Protein Wnt" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B5MCC8 WNT10B "Protein Wnt" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4VAJ4 WNT10B "Protein Wnt" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-278 wnt10a "wingless-type MMTV integration site family, member 10a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C9J3H3 WNT10B "Protein Wnt" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
pfam00110 308 pfam00110, wnt, wnt family 4e-16
pfam00110 308 pfam00110, wnt, wnt family 4e-16
smart00097 305 smart00097, WNT1, found in Wnt-1 3e-11
smart00097 305 smart00097, WNT1, found in Wnt-1 3e-11
>gnl|CDD|215724 pfam00110, wnt, wnt family Back     alignment and domain information
 Score = 73.0 bits (180), Expect = 4e-16
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 5  MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 55
          +C  L GL++ Q  LC ++P+V +    G RL +EECQHQF   RWNCS+L
Sbjct: 1  ICSKLPGLSRKQRRLCRRNPDVMASVGEGARLGIEECQHQFRNRRWNCSTL 51


Wnt genes have been identified in vertebrates and invertebrates but not in plants, unicellular eukaryotes or prokaryotes. In humans, 19 WNT proteins are known. Because of their insolubility little is known about Wnt protein structure, but all have 23 or 24 Cys residues whose spacing is highly conserved. Signal transduction by Wnt proteins (including the Wnt/beta-catenin, the Wnt/Ca++, and the Wnt/polarity pathway) is mediated by receptors of the Frizzled and LDL-receptor-related protein (LRP) families. Length = 308

>gnl|CDD|215724 pfam00110, wnt, wnt family Back     alignment and domain information
>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1 Back     alignment and domain information
>gnl|CDD|128408 smart00097, WNT1, found in Wnt-1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 159
KOG3913|consensus 356 99.89
PF00110 310 wnt: wnt family; InterPro: IPR005817 Wnt proteins 99.86
smart00097 305 WNT1 found in Wnt-1. 99.84
KOG3913|consensus 356 99.78
PF00110 310 wnt: wnt family; InterPro: IPR005817 Wnt proteins 99.72
smart00097 305 WNT1 found in Wnt-1. 99.65
>KOG3913|consensus Back     alignment and domain information
Probab=99.89  E-value=6.8e-24  Score=179.00  Aligned_cols=82  Identities=33%  Similarity=0.600  Sum_probs=76.9

Q ss_pred             hhcCCCCCcHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccchhhhhhhhcccccccccc
Q psy12571          5 MCKSLSGLTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSSLLKKFSIVSSIHWSTKYA   84 (159)
Q Consensus         5 ~C~~~~~l~~~Q~~lC~~~~~~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~~L~~gt~e~a~~wa~~~a   84 (159)
                      +|+.++||+++|+++|+++|++|++|.+|+++||+|||+||+++|||||...   ..++|+++++.|+||+||+|++++|
T Consensus        47 ~C~~l~gL~~~Q~~~Cr~~p~~~~sv~~G~~~~i~ECq~QFr~~RWNCs~~~---~~~~~g~~l~~g~REsAFv~AIssA  123 (356)
T KOG3913|consen   47 LCDNLPGLSPRQRRLCRRNPDVMPSVAEGAREGIQECQFQFRFRRWNCSTLD---QLPVFGPLLSRGTRETAFVYAISSA  123 (356)
T ss_pred             chhhccccCHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhhccCCCCCc---cccccchhhcccchHHHHHHHHHHh
Confidence            7999999999999999999999999999999999999999999999999864   4678999999999999999999999


Q ss_pred             chhhh
Q psy12571         85 SDLQA   89 (159)
Q Consensus        85 s~l~l   89 (159)
                      ++...
T Consensus       124 gV~ha  128 (356)
T KOG3913|consen  124 GVAHA  128 (356)
T ss_pred             HHHHH
Confidence            87543



>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development Back     alignment and domain information
>smart00097 WNT1 found in Wnt-1 Back     alignment and domain information
>KOG3913|consensus Back     alignment and domain information
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development Back     alignment and domain information
>smart00097 WNT1 found in Wnt-1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query159
4f0a_B 316 Protein WNT-8, XWNT-8; WNT signaling, ligand-recep 3e-08
4f0a_B 316 Protein WNT-8, XWNT-8; WNT signaling, ligand-recep 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis} Length = 316 Back     alignment and structure
 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 12 LTKTQLDLCYKHPEVTSVALRGLRLAVEECQHQFHKNRWNCSSL 55
          +    +     +   ++    G +  +EEC++QF   RWNC   
Sbjct: 4  VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPES 47


>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis} Length = 316 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query159
4f0a_B 316 Protein WNT-8, XWNT-8; WNT signaling, ligand-recep 99.64
4f0a_B 316 Protein WNT-8, XWNT-8; WNT signaling, ligand-recep 99.28
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis} Back     alignment and structure
Probab=99.64  E-value=1.9e-17  Score=138.17  Aligned_cols=69  Identities=19%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             HHHHHhc----CcchHHHHHHHHHHHHHHHHHHhccCccCCccccccCCCCCccc-hhhhhhhhccccccccccchhh
Q psy12571         16 QLDLCYK----HPEVTSVALRGLRLAVEECQHQFHKNRWNCSSLITKNSNPHTSS-LLKKFSIVSSIHWSTKYASDLQ   88 (159)
Q Consensus        16 Q~~lC~~----~~~~~~~i~~g~~~~~~eC~~qF~~~rWNCs~~~~~~~~~~~~~-~L~~gt~e~a~~wa~~~as~l~   88 (159)
                      |..|+..    +|++|++|.+|+++||+|||+||+++|||||...    .+++++ +|..|+||+||++++++|+.+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~v~~Ga~~~i~ECq~QFr~~RWNCs~~~----~~~~~~~~l~~g~REtAFv~AissAgv~~   77 (316)
T 4f0a_B            4 VNNFLMTGPKAYLTYSASVAVGAQNGIEECKYQFAWERWNCPEST----LQLATHNGLRSATRETSFVHAISSAGVMY   77 (316)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCCT----THHHHCTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCccChHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc----cccCCcccccCCCHHHHHHHHHHHHHHHH
Confidence            4455554    4579999999999999999999999999999542    344555 6889999999999999998754



>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00