Psyllid ID: psy12576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHH
Coil and Loop (DISEMBL)
MKSDIDEVALQGIEFWSNVSDEEVDlaiedseaadfgrpptrtsrfyAKGALQYLVPILTqkltkqeelddeddwnpckaAGVCLMLLSscceedmvphilpfvnaNIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL
Flexible Loop (DISEMBL)
MKSDIDEVALQGIEFWSNVSDEEVDLAIEdseaadfgrpptRTSRFYAKGALQYLVPILTQKLTKQeelddeddwnPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEatqspdtqIRVAALQCL
Low Complexity Region (SEG)
MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL
Disordered region (IsUnstruct)
*******VALQGIEFWSNVSDEEVDLA****************SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ**************
Disordered Region (DISOPRED)
***DIDEVALQGIEFWSNVSDEEVDLAIEDS**************FYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL
Disordered Region (DISEMBL)
MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL
Disordered Region (DISPRO)
**SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAA***RPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	165	2.2.26 [Sep-21-2011]
P70168	876	Importin subunit beta-1 O	yes	N/A	0.787	0.148	0.776	6e-55
P52296	875	Importin subunit beta-1 O	yes	N/A	0.787	0.148	0.776	7e-55
Q14974	876	Importin subunit beta-1 O	yes	N/A	0.787	0.148	0.769	3e-54
O18388	884	Importin subunit beta OS=	yes	N/A	0.769	0.143	0.661	6e-49
O13864	863	Importin subunit beta-1 O	yes	N/A	0.793	0.151	0.396	6e-24
Q06142	861	Importin subunit beta-1 O	yes	N/A	0.763	0.146	0.4	1e-20
Q8BFY9	898	Transportin-1 OS=Mus musc	no	N/A	0.690	0.126	0.282	0.0002
Q92973	898	Transportin-1 OS=Homo sap	no	N/A	0.690	0.126	0.282	0.0002
Q3SYU7	898	Transportin-1 OS=Bos taur	no	N/A	0.690	0.126	0.282	0.0002

>sp|P70168|IMB1_MOUSE Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2

 Score =  213 bits (541), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 118/130 (90%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query: 121 MSFGAILVRP 130
           M+FG+IL  P
Sbjct: 388 MAFGSILEGP 397

Functions in nuclear protein import, either in association with an adapter protein, like an importin-alpha subunit, which binds to nuclear localization signals (NLS) in cargo substrates, or by acting as autonomous nuclear transport receptor. Acting autonomously, serves itself as NLS receptor. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with IPO7 mediates the nuclear import of H1 histone. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev. Imports PRKCI into the nucleus.
Mus musculus (taxid: 10090)

>sp|P52296|IMB1_RAT Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1

 Score =  212 bits (540), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 118/130 (90%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 326

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 327 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 386

Query: 121 MSFGAILVRP 130
           M+FG+IL  P
Sbjct: 387 MAFGSILEGP 396

Functions in nuclear protein import, either in association with an adapter protein, like an importin-alpha subunit, which binds to nuclear localization signals (NLS) in cargo substrates, or by acting as autonomous nuclear transport receptor. Acting autonomously, serves itself as NLS receptor. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with IPO7 mediates the nuclear import of H1 histone. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev. Imports PRKCI into the nucleus.

Rattus norvegicus (taxid: 10116)

>sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query: 121 MSFGAILVRP 130
           M+FG IL  P
Sbjct: 388 MAFGCILEGP 397

Functions in nuclear protein import, either in association with an adapter protein, like an importin-alpha subunit, which binds to nuclear localization signals (NLS) in cargo substrates, or by acting as autonomous nuclear transport receptor. Acting autonomously, serves itself as NLS receptor. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mediates autonomously the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In association with IPO7 mediates the nuclear import of H1 histone. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev. Imports PRKCI into the nucleus.

Homo sapiens (taxid: 9606)

>sp|O18388|IMB_DROME Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=2 SV=2

 Score =  192 bits (489), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 105/127 (82%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSD D VALQGIEFWSNV DEE+DLAIE  EA D GR P R S+ YA+GALQ+L P+L 
Sbjct: 274 MKSDNDAVALQGIEFWSNVCDEEIDLAIESQEATDQGRAPQRVSKHYARGALQFLTPVLV 333

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQ+E DDED W+P KAA VCLM+L++CCE+++VPH+LPF+  NIE  +WR RDAA+
Sbjct: 334 EKLTKQDECDDEDTWSPAKAASVCLMVLATCCEDEIVPHVLPFIKENIESPNWRFRDAAV 393

Query: 121 MSFGAIL 127
           M+FG++L
Sbjct: 394 MTFGSVL 400

Required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins.

Drosophila melanogaster (taxid: 7227)

>sp|O13864|IMB1_SCHPO Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap95 PE=3 SV=1

 Score =  109 bits (273), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 81/131 (61%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           M +  ++VALQ +EFWS V +EE+++ +E  EA D    P R +  +A+ A   ++P+L 
Sbjct: 268 MYNTNEQVALQAVEFWSTVCEEEIEVNLEIQEAQDLNEVPARQNHGFARAAAADILPVLL 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           + L  Q+E  DEDDWN   AA  CL L +    + +V  +L FV  NI++ DW  R+AA+
Sbjct: 328 KLLCNQDEDADEDDWNISMAAATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAV 387

Query: 121 MSFGAILVRPS 131
           M+FG++L  P+
Sbjct: 388 MAFGSVLEGPN 398

Required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins. Serves a receptor for nuclear localization signals.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06142|IMB1_YEAST Importin subunit beta-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP95 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 4/130 (3%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS  D+VA   +EFWS + +EE+D+A E    A F + P ++  F A  +++ +VP L 
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYE---LAQFPQSPLQSYNF-ALSSIKDVVPNLL 330

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             LT+Q E  ++DDWN   +AG CL L +  C   ++  +L FV  NI   +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390

Query: 121 MSFGAILVRP 130
           M+FG+I+  P
Sbjct: 391 MAFGSIMDGP 400

Required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins. Serves a receptor for nuclear localization signals. Mediates the nuclear import of histones H2A and H2B.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8BFY9|TNPO1_MOUSE Transportin-1 OS=Mus musculus GN=Tnpo1 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)

Query: 3   SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
           SDID + L+G        D E D  I DSE     RP    SR  A+   +  +      
Sbjct: 319 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHEEDGIEEEDDD 368

Query: 63  LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
             + ++ D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ ++ 
Sbjct: 369 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 428

Query: 123 FGAI 126
            GAI
Sbjct: 429 LGAI 432

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A (By similarity). In vitro, mediates nuclear import of SRP19 (By similarity) and H2A, H2B, H3 and H4 histones.

Mus musculus (taxid: 10090)

>sp|Q92973|TNPO1_HUMAN Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)

Query: 3   SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
           SDID + L+G        D E D  I DSE     RP    SR  A+   +  +      
Sbjct: 319 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEDDD 368

Query: 63  LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
             + ++ D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ ++ 
Sbjct: 369 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 428

Query: 123 FGAI 126
            GAI
Sbjct: 429 LGAI 432

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones, and SRP19. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.

Homo sapiens (taxid: 9606)

>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)

Query: 3   SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
           SDID + L+G        D E D  I DSE     RP    SR  A+   +  +      
Sbjct: 319 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEEDD 368

Query: 63  LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
             + ++ D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ ++ 
Sbjct: 369 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 428

Query: 123 FGAI 126
            GAI
Sbjct: 429 LGAI 432

Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Appears also to be involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones, and SRP19. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
241862609	430	importin beta, nuclear transport factor,	0.787	0.302	0.784	1e-56
427785429	878	Putative karyopherin importin beta 1 [Rh	0.787	0.148	0.776	2e-56
321465952	888	hypothetical protein DAPPUDRAFT_306007 [	0.787	0.146	0.769	3e-56
383857795	890	PREDICTED: importin subunit beta-1 [Mega	0.769	0.142	0.771	2e-55
345485792	886	PREDICTED: importin subunit beta-1-like	0.769	0.143	0.763	2e-55
340723427	889	PREDICTED: importin subunit beta-1-like	0.769	0.142	0.787	2e-55
345485790	887	PREDICTED: importin subunit beta-1-like	0.769	0.143	0.763	2e-55
350427743	890	PREDICTED: importin subunit beta-1-like	0.769	0.142	0.787	3e-55
332019522	890	Importin subunit beta-1 [Acromyrmex echi	0.769	0.142	0.779	3e-55
307188424	829	Importin subunit beta-1 [Camponotus flor	0.769	0.153	0.779	3e-55

>gi|241862609|ref|XP_002416395.1| importin beta, nuclear transport factor, putative [Ixodes scapularis] gi|215510609|gb|EEC20062.1| importin beta, nuclear transport factor, putative [Ixodes scapularis]

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 115/130 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEEVDL+IE SEA++ GRPP RTSRFYAKGALQYLVPIL 
Sbjct: 202 MKSDIDEVALQGIEFWSNVCDEEVDLSIEASEASEQGRPPARTSRFYAKGALQYLVPILV 261

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQEE DDEDDWNPCKAAGVCLML++SCCE+DM+ H LPFV  +I+H DWR+RDAA+
Sbjct: 262 QTLTKQEEHDDEDDWNPCKAAGVCLMLMASCCEDDMIAHSLPFVREHIKHPDWRYRDAAV 321

Query: 121 MSFGAILVRP 130
           M+FG +L  P
Sbjct: 322 MTFGCLLEGP 331

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427785429|gb|JAA58166.1| Putative karyopherin importin beta 1 [Rhipicephalus pulchellus]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 115/130 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV +EEVDL+IE SEA++ GRPP RTSRFYAKGALQYLVPIL 
Sbjct: 268 MKSDIDEVALQGIEFWSNVCEEEVDLSIEASEASEQGRPPARTSRFYAKGALQYLVPILV 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQEE DDEDDWNPCKAAGVCLML++SCCE+DM+ H LPFV  +I+H DWR+RDAA+
Sbjct: 328 QTLTKQEEHDDEDDWNPCKAAGVCLMLMASCCEDDMISHSLPFVREHIKHPDWRYRDAAV 387

Query: 121 MSFGAILVRP 130
           M+FG +L  P
Sbjct: 388 MTFGCLLEGP 397

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321465952|gb|EFX76950.1| hypothetical protein DAPPUDRAFT_306007 [Daphnia pulex]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 115/130 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           M+S+IDE+ALQGIEFWSNV DEEVDLAIE SEAA+ GRPP  TS+FYAKGALQYLVP+L 
Sbjct: 274 MRSEIDEIALQGIEFWSNVCDEEVDLAIEASEAAEMGRPPEHTSKFYAKGALQYLVPVLM 333

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQEE DDEDDWNPCKAAGVCLMLL++CCE+ +VPH+LPFV  NIE+ DWR RDAA+
Sbjct: 334 QTLTKQEEYDDEDDWNPCKAAGVCLMLLANCCEDVIVPHVLPFVKENIENPDWRFRDAAV 393

Query: 121 MSFGAILVRP 130
           M+FG+IL  P
Sbjct: 394 MAFGSILEGP 403

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857795|ref|XP_003704389.1| PREDICTED: importin subunit beta-1 [Megachile rotundata]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 98/127 (77%), Positives = 113/127 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNVS+EEVDL++E+ EA+D GRPP + SR YAKGALQYLVP+L 
Sbjct: 275 MKSDIDEVALQGIEFWSNVSEEEVDLSMEEGEASDGGRPPVKVSRHYAKGALQYLVPVLM 334

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQEE D+EDDWNP KAAGVCLMLLSSCCEE + P++LPFV  NIE  +WRHRDAAL
Sbjct: 335 KKLTKQEEFDNEDDWNPSKAAGVCLMLLSSCCEEAIFPYVLPFVKENIESPNWRHRDAAL 394

Query: 121 MSFGAIL 127
           M+FG+IL
Sbjct: 395 MAFGSIL 401

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485792|ref|XP_003425337.1| PREDICTED: importin subunit beta-1-like isoform 2 [Nasonia vitripennis]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 116/127 (91%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS+IDEVALQGIEFWSNVSDEEVDL++E+ EA++ GRPP++ SR YAKGALQYLVP+L 
Sbjct: 273 MKSEIDEVALQGIEFWSNVSDEEVDLSMEEGEASEGGRPPSKVSRHYAKGALQYLVPVLM 332

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQEE DDEDDWNP KAAGVCLMLL+SCCEE +VP++LPFV  NI++ DWR+RDAAL
Sbjct: 333 KKLTKQEEFDDEDDWNPSKAAGVCLMLLASCCEESIVPYVLPFVKDNIKNPDWRYRDAAL 392

Query: 121 MSFGAIL 127
           M+FG+IL
Sbjct: 393 MAFGSIL 399

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723427|ref|XP_003400091.1| PREDICTED: importin subunit beta-1-like [Bombus terrestris]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 112/127 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNVSDEEVDLA+E+ EA D GRPP + SR YAKGALQYLVP+L 
Sbjct: 275 MKSDIDEVALQGIEFWSNVSDEEVDLAMEEGEATDGGRPPVKVSRHYAKGALQYLVPVLM 334

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQEE DDEDDWNP KAAGVCLMLLSSCCE+ +VP +LPFV  NI+  DWR+RDAAL
Sbjct: 335 KKLTKQEEFDDEDDWNPSKAAGVCLMLLSSCCEDAIVPFVLPFVKDNIKSHDWRYRDAAL 394

Query: 121 MSFGAIL 127
           M+FG+IL
Sbjct: 395 MAFGSIL 401

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485790|ref|XP_001599381.2| PREDICTED: importin subunit beta-1-like isoform 1 [Nasonia vitripennis]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 116/127 (91%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS+IDEVALQGIEFWSNVSDEEVDL++E+ EA++ GRPP++ SR YAKGALQYLVP+L 
Sbjct: 273 MKSEIDEVALQGIEFWSNVSDEEVDLSMEEGEASEGGRPPSKVSRHYAKGALQYLVPVLM 332

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQEE DDEDDWNP KAAGVCLMLL+SCCEE +VP++LPFV  NI++ DWR+RDAAL
Sbjct: 333 KKLTKQEEFDDEDDWNPSKAAGVCLMLLASCCEESIVPYVLPFVKDNIKNPDWRYRDAAL 392

Query: 121 MSFGAIL 127
           M+FG+IL
Sbjct: 393 MAFGSIL 399

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350427743|ref|XP_003494863.1| PREDICTED: importin subunit beta-1-like [Bombus impatiens]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 112/127 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNVSDEEVDLA+E+ EA D GRPP + SR YAKGALQYLVP+L 
Sbjct: 275 MKSDIDEVALQGIEFWSNVSDEEVDLAMEEGEATDGGRPPVKVSRHYAKGALQYLVPVLM 334

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQEE DDEDDWNP KAAGVCLMLLSSCCE+ +VP +LPFV  NI+  DWR+RDAAL
Sbjct: 335 KKLTKQEEFDDEDDWNPSKAAGVCLMLLSSCCEDAIVPFVLPFVKDNIKSHDWRYRDAAL 394

Query: 121 MSFGAIL 127
           M+FG+IL
Sbjct: 395 MAFGSIL 401

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019522|gb|EGI60001.1| Importin subunit beta-1 [Acromyrmex echinatior]

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 113/127 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNVSDEEVDL++E+ EA++ GRPP + SR YAKGALQYLVP+L 
Sbjct: 275 MKSDIDEVALQGIEFWSNVSDEEVDLSMEEGEASEGGRPPLKVSRHYAKGALQYLVPVLM 334

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQEE DDEDDWNP KAAGVCLMLLSSCCEE +VP +LPFV  NI+  DWR+RDAAL
Sbjct: 335 KKLTKQEEFDDEDDWNPSKAAGVCLMLLSSCCEEAIVPFVLPFVKDNIKSPDWRYRDAAL 394

Query: 121 MSFGAIL 127
           M+FG+IL
Sbjct: 395 MAFGSIL 401

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188424|gb|EFN73181.1| Importin subunit beta-1 [Camponotus floridanus]

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 99/127 (77%), Positives = 113/127 (88%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNVSDEEVDL++E+ EA++ GRPP + SR YAKGALQYLVP+L 
Sbjct: 214 MKSDIDEVALQGIEFWSNVSDEEVDLSMEEGEASEGGRPPLKVSRHYAKGALQYLVPVLM 273

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           +KLTKQEE DDEDDWNP KAAGVCLMLLSSCCEE +VP +LPFV  NI+  DWR+RDAAL
Sbjct: 274 KKLTKQEEFDDEDDWNPSKAAGVCLMLLSSCCEESIVPFVLPFVKDNIKSPDWRYRDAAL 333

Query: 121 MSFGAIL 127
           M+FG+IL
Sbjct: 334 MAFGSIL 340

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
ZFIN|ZDB-GENE-030131-2579	876	kpnb1 "karyopherin (importin)	0.787	0.148	0.753	5e-54
UNIPROTKB|B7ZAV6	731	KPNB1 "cDNA, FLJ79320, highly	0.787	0.177	0.769	3e-53
RGD|2909	875	Kpnb1 "karyopherin (importin)	0.787	0.148	0.776	4.2e-53
UNIPROTKB|P52296	875	Kpnb1 "Importin subunit beta-1	0.787	0.148	0.776	4.2e-53
MGI|MGI:107532	876	Kpnb1 "karyopherin (importin)	0.787	0.148	0.776	4.2e-53
UNIPROTKB|F1NP63	844	KPNB1 "Uncharacterized protein	0.787	0.154	0.769	8.8e-53
UNIPROTKB|F1RWJ5	877	KPNB1 "Uncharacterized protein	0.787	0.148	0.769	9.1e-53
UNIPROTKB|E1BFV0	876	KPNB1 "Uncharacterized protein	0.787	0.148	0.769	1.2e-52
UNIPROTKB|F6X637	876	KPNB1 "Uncharacterized protein	0.787	0.148	0.769	1.2e-52
UNIPROTKB|Q14974	876	KPNB1 "Importin subunit beta-1	0.787	0.148	0.769	1.2e-52

ZFIN|ZDB-GENE-030131-2579 kpnb1 "karyopherin (importin) beta 1" [Danio rerio (taxid:7955)]

 Score = 550 (198.7 bits), Expect = 5.0e-54, Sum P(2) = 5.0e-54
 Identities = 98/130 (75%), Positives = 118/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE +EA++ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEATEASEQGRPPEHTSKFYAKGALQYLVPILT 327

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I+H DWR+RDA++
Sbjct:   328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDVVPHVLPFIKEHIKHPDWRYRDASV 387

Query:   121 MSFGAILVRP 130
             M+FG+IL  P
Sbjct:   388 MAFGSILEGP 397

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|B7ZAV6 KPNB1 "cDNA, FLJ79320, highly similar to Importin beta-1 subunit" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 100/130 (76%), Positives = 117/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   123 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 182

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   183 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 242

Query:   121 MSFGAILVRP 130
             M+FG IL  P
Sbjct:   243 MAFGCILEGP 252

GO:0006610 "ribosomal protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

RGD|2909 Kpnb1 "karyopherin (importin) beta 1" [Rattus norvegicus (taxid:10116)]

 Score = 555 (200.4 bits), Expect = 4.2e-53, P = 4.2e-53
 Identities = 101/130 (77%), Positives = 118/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 326

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   327 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 386

Query:   121 MSFGAILVRP 130
             M+FG+IL  P
Sbjct:   387 MAFGSILEGP 396

GO:0005515 "protein binding" evidence=IPI

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006606 "protein import into nucleus" evidence=ISO

GO:0006610 "ribosomal protein import into nucleus" evidence=IEA;ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0031965 "nuclear membrane" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|P52296 Kpnb1 "Importin subunit beta-1" [Rattus norvegicus (taxid:10116)]

 Score = 555 (200.4 bits), Expect = 4.2e-53, P = 4.2e-53
 Identities = 101/130 (77%), Positives = 118/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 326

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   327 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 386

Query:   121 MSFGAILVRP 130
             M+FG+IL  P
Sbjct:   387 MAFGSILEGP 396

GO:0005643 "nuclear pore" evidence=IEA

MGI|MGI:107532 Kpnb1 "karyopherin (importin) beta 1" [Mus musculus (taxid:10090)]

 Score = 555 (200.4 bits), Expect = 4.2e-53, P = 4.2e-53
 Identities = 101/130 (77%), Positives = 118/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   328 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query:   121 MSFGAILVRP 130
             M+FG+IL  P
Sbjct:   388 MAFGSILEGP 397

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=ISO;IDA

GO:0006610 "ribosomal protein import into nucleus" evidence=ISO;IDA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0043234 "protein complex" evidence=IDA

UNIPROTKB|F1NP63 KPNB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 551 (199.0 bits), Expect = 8.8e-53, P = 8.8e-53
 Identities = 100/130 (76%), Positives = 117/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   235 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 294

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   295 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 354

Query:   121 MSFGAILVRP 130
             M+FG IL  P
Sbjct:   355 MAFGCILEGP 364

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006610 "ribosomal protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

UNIPROTKB|F1RWJ5 KPNB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 552 (199.4 bits), Expect = 9.1e-53, P = 9.1e-53
 Identities = 100/130 (76%), Positives = 118/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query:   121 MSFGAILVRP 130
             M+FG+IL  P
Sbjct:   388 MAFGSILEGP 397

GO:0031965 "nuclear membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006610 "ribosomal protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|E1BFV0 KPNB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 551 (199.0 bits), Expect = 1.2e-52, P = 1.2e-52
 Identities = 100/130 (76%), Positives = 117/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query:   121 MSFGAILVRP 130
             M+FG IL  P
Sbjct:   388 MAFGCILEGP 397

GO:0031965 "nuclear membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006610 "ribosomal protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F6X637 KPNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 551 (199.0 bits), Expect = 1.2e-52, P = 1.2e-52
 Identities = 100/130 (76%), Positives = 117/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query:   121 MSFGAILVRP 130
             M+FG IL  P
Sbjct:   388 MAFGCILEGP 397

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|Q14974 KPNB1 "Importin subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 551 (199.0 bits), Expect = 1.2e-52, P = 1.2e-52
 Identities = 100/130 (76%), Positives = 117/130 (90%)

Query:     1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
             MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct:   268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query:    61 QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct:   328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query:   121 MSFGAILVRP 130
             M+FG IL  P
Sbjct:   388 MAFGCILEGP 397

GO:0005643 "nuclear pore" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006610 "ribosomal protein import into nucleus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=IDA

GO:0000060 "protein import into nucleus, translocation" evidence=TAS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=TAS

GO:0008139 "nuclear localization sequence binding" evidence=TAS

GO:0008270 "zinc ion binding" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006309 "apoptotic DNA fragmentation" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006921 "cellular component disassembly involved in execution phase of apoptosis" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O18388	IMB_DROME	No assigned EC number	0.6614	0.7696	0.1436	yes	N/A
P52296	IMB1_RAT	No assigned EC number	0.7769	0.7878	0.1485	yes	N/A
P70168	IMB1_MOUSE	No assigned EC number	0.7769	0.7878	0.1484	yes	N/A
Q14974	IMB1_HUMAN	No assigned EC number	0.7692	0.7878	0.1484	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	165
COG5215	858	COG5215, KAP95, Karyopherin (importin) beta [Intra	1e-27
COG5215	858	COG5215, KAP95, Karyopherin (importin) beta [Intra	9e-05

>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion]

 Score =  107 bits (269), Expect = 1e-27
 Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 4/130 (3%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS  DEVA+Q +EFWS + +EE+D  +ED         P +   F A+ A+  ++P L 
Sbjct: 272 MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY---LPEVPAQNHGF-ARAAVADVLPELL 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             L KQ E    DDWNP  AA  CL L +    + ++  +L FV  NI    W +R+AA+
Sbjct: 328 SLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAV 387

Query: 121 MSFGAILVRP 130
           M+FG+++  P
Sbjct: 388 MAFGSVMHGP 397

Length = 858

>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion]

 Score = 41.5 bits (97), Expect = 9e-05
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 138 ERNFIMEVVCEATQSPDTQIRVAALQCL 165
           ERN+ M+VVCEATQ  D +++ AA  CL
Sbjct: 218 ERNYFMQVVCEATQGNDEELQHAAFGCL 245

Length = 858

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
KOG1241|consensus	859		100.0
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	100.0
KOG2171|consensus	1075		99.95
KOG2023|consensus	885		99.95
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	99.1
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.99
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.9
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.89
KOG2171|consensus	1075		98.75
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.52
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.31
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	98.22
KOG1241|consensus	859		98.21
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.06
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.03
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.98
KOG1242|consensus	569		97.98
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.97
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.85
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.78
PRK09687	280	putative lyase; Provisional	97.76
KOG2023|consensus	885		97.53
PRK09687	280	putative lyase; Provisional	97.5
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.37
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.35
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.31
KOG1991|consensus	1010		96.93
KOG0212|consensus	675		96.93
KOG0915|consensus	1702		96.9
KOG0166|consensus	514		96.86
KOG2956|consensus	516		96.84
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.84
PTZ00429	746	beta-adaptin; Provisional	96.84
KOG0213|consensus	1172		96.69
KOG1242|consensus	569		96.62
PTZ00429	746	beta-adaptin; Provisional	96.57
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.39
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	96.35
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.3
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.3
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.29
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.09
KOG1820|consensus	815		95.91
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.53
KOG1240|consensus	1431		95.36
KOG0211|consensus	759		95.35
KOG1967|consensus	1030		95.28
KOG0213|consensus	1172		95.16
KOG4413|consensus	524		94.95
PF05004	309	IFRD: Interferon-related developmental regulator (	94.94
KOG2259|consensus	823		94.89
KOG0166|consensus	514		94.84
KOG1943|consensus	1133		94.82
KOG0212|consensus	675		94.78
KOG2081|consensus	559		94.74
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.72
KOG1967|consensus	1030		94.66
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.59
KOG1824|consensus	1233		94.56
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.53
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	94.5
TIGR02270	410	conserved hypothetical protein. Members are found	94.38
KOG1248|consensus	1176		94.03
KOG1248|consensus	1176		94.01
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	93.81
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	93.81
COG1413	335	FOG: HEAT repeat [Energy production and conversion	93.77
KOG0211|consensus	759		93.75
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	93.54
KOG1517|consensus	1387		93.47
TIGR02270	410	conserved hypothetical protein. Members are found	93.12
COG1413	335	FOG: HEAT repeat [Energy production and conversion	93.04
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	93.0
PF05004	309	IFRD: Interferon-related developmental regulator (	92.99
COG5096	757	Vesicle coat complex, various subunits [Intracellu	92.88
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	92.83
KOG1240|consensus	1431		92.73
KOG1992|consensus	960		92.68
KOG2933|consensus	334		92.49
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	92.48
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.44
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	92.39
KOG4653|consensus	982		92.05
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	92.0
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.72
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	91.61
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	91.39
KOG1060|consensus	968		90.88
KOG2025|consensus	892		90.71
KOG0567|consensus	289		90.44
KOG2549|consensus	576		90.07
PF11919	90	DUF3437: Domain of unknown function (DUF3437); Int	90.06
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	89.79
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.77
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	89.0
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	88.87
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	88.75
KOG4500|consensus	604		88.46
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	88.3
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	88.19
KOG0915|consensus	1702		88.13
KOG1991|consensus	1010		88.1
KOG0414|consensus	1251		87.64
KOG1824|consensus	1233		87.64
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	87.18
COG5656	970	SXM1 Importin, protein involved in nuclear import	87.18
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	86.97
KOG1851|consensus	1710		86.89
KOG2933|consensus	334		86.89
KOG1293|consensus	678		86.8
KOG0392|consensus	1549		86.77
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	86.36
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	86.08
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	86.04
KOG2032|consensus	533		85.0
KOG2259|consensus	823		84.75
KOG1059|consensus	877		84.72
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	84.45
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	84.43
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	84.36
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	84.27
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	83.7
KOG1822|consensus	2067		83.69
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	82.89
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	82.7
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	82.15
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	81.93
PHA02836	153	putative transmembrane protein; Provisional	81.76
KOG4224|consensus	550		81.29
KOG2022|consensus	982		81.15
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	80.47
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	80.28

>KOG1241|consensus

Probab=100.00  E-value=2.9e-42  Score=307.78  Aligned_cols=162  Identities=50%  Similarity=0.843  Sum_probs=155.6

Q ss_pred             CCCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhH
Q psy12576          1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKA   80 (165)
Q Consensus         1 ~~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~   80 (165)
                      |+|++|+|++||||||+|+||+|+++..++.++.+.|.+|  .|++|++++++.++|+||++|++||||+|||+|||++|
T Consensus       268 mks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p--~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA  345 (859)
T KOG1241|consen  268 MKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP--SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA  345 (859)
T ss_pred             HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence            6899999999999999999999999999999998888876  68899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576         81 AGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVA  160 (165)
Q Consensus        81 a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a  160 (165)
                      |+.||..+|+++||+|+|+|+|||+++++++||++|+||+||||+|++|+.+..+++..++.+|.+++.+.||.-.||.+
T Consensus       346 Ag~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdT  425 (859)
T KOG1241|consen  346 AGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDT  425 (859)
T ss_pred             HHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhc
Q psy12576        161 ALQC  164 (165)
Q Consensus       161 A~~a  164 (165)
                      |.-+
T Consensus       426 aAwt  429 (859)
T KOG1241|consen  426 AAWT  429 (859)
T ss_pred             HHHH
Confidence            7544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.2e-33  Score=247.51  Aligned_cols=161  Identities=31%  Similarity=0.503  Sum_probs=147.0

Q ss_pred             CCCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhH
Q psy12576          1 MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKA   80 (165)
Q Consensus         1 ~~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~   80 (165)
                      |+|++|+|++||+|||+||||+|.+........-   ..|. .+.+|++.+...++|.||++|++|+||.++|+||++++
T Consensus       272 mks~nd~va~qavEfWsticeEeid~~~e~~~~p---e~p~-qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma  347 (858)
T COG5215         272 MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP---EVPA-QNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA  347 (858)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc---cCch-hhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence            6899999999999999999999988766544321   2444 46779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576         81 AGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVA  160 (165)
Q Consensus        81 a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a  160 (165)
                      |+.||...++.+|++|+.+|+.||++++++++|+.|+||+||||++++|+.+..++++.++.+|.|.+...||-.-|+..
T Consensus       348 A~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~t  427 (858)
T COG5215         348 ASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKST  427 (858)
T ss_pred             HHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhcC
Q psy12576        161 ALQCL  165 (165)
Q Consensus       161 A~~al  165 (165)
                      +..|+
T Consensus       428 tAwc~  432 (858)
T COG5215         428 TAWCF  432 (858)
T ss_pred             HHHHH
Confidence            87663

>KOG2171|consensus

Probab=99.95  E-value=2.5e-28  Score=225.93  Aligned_cols=142  Identities=23%  Similarity=0.384  Sum_probs=122.4

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCC--CcccHHHHHHHHhHHHHHHHHHhhccCCCC---------C
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPP--TRTSRFYAKGALQYLVPILTQKLTKQEELD---------D   71 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~---------d   71 (165)
                      +-++.++..|+||..+++|.                .|  .|++..    +.+.|+|.+|.+|++.++|+         |
T Consensus       260 ~l~~~~R~~ALe~ivs~~e~----------------Ap~~~k~~~~----~~~~lv~~~l~~mte~~~D~ew~~~d~~de  319 (1075)
T KOG2171|consen  260 ELENSIRHLALEFLVSLSEY----------------APAMCKKLAL----LGHTLVPVLLAMMTEEEDDDEWSNEDDLDE  319 (1075)
T ss_pred             cccHHHHHHHHHHHHHHHHh----------------hHHHhhhchh----hhccHHHHHHHhcCCcccchhhcccccccc
Confidence            45788999999999999986                12  122222    45679999999999765441         2


Q ss_pred             cCCCchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576         72 EDDWNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT  150 (165)
Q Consensus        72 ddew~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l  150 (165)
                      ||+.+++.+|.++||++|.++| ++++|++++++..+++|++|++|+||+||||+|+|||++.+.+ +++.||++|++++
T Consensus       320 d~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l  398 (1075)
T KOG2171|consen  320 DDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGL  398 (1075)
T ss_pred             ccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhc
Confidence            3336889999999999999999 7899999999999999999999999999999999999997665 8999999999999


Q ss_pred             CCCCHHHHHHHHhcC
Q psy12576        151 QSPDTQIRVAALQCL  165 (165)
Q Consensus       151 ~D~~p~VR~aA~~al  165 (165)
                      +|||||||+|||+|+
T Consensus       399 ~DphprVr~AA~nai  413 (1075)
T KOG2171|consen  399 NDPHPRVRYAALNAI  413 (1075)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999999999986

>KOG2023|consensus

Probab=99.95  E-value=2.2e-28  Score=216.96  Aligned_cols=141  Identities=22%  Similarity=0.446  Sum_probs=123.9

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccC--------------
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQE--------------   67 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~--------------   67 (165)
                      |..+|+||++|+|||.++||.                 |  .++..+..++++|+|+|++.|.+.|              
T Consensus       266 qd~dE~VALEACEFwla~aeq-----------------p--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~  326 (885)
T KOG2023|consen  266 QDVDENVALEACEFWLALAEQ-----------------P--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES  326 (885)
T ss_pred             cCcchhHHHHHHHHHHHHhcC-----------------c--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence            567889999999999999984                 2  4566788889999999999998631              


Q ss_pred             --------------------------CC--C---CcC----CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCc
Q psy12576         68 --------------------------EL--D---DED----DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD  112 (165)
Q Consensus        68 --------------------------ed--~---ddd----ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~d  112 (165)
                                                ||  |   |||    +||.+|+++.+||.||..+|++++|.+||++++++.+++
T Consensus       327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~  406 (885)
T KOG2023|consen  327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEE  406 (885)
T ss_pred             CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcch
Confidence                                      11  1   111    499999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576        113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus       113 w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~  162 (165)
                      |..|+||++|||+|+|||.+.+. +||+.++|++++.|.|..|.||.-.|
T Consensus       407 W~vrEagvLAlGAIAEGcM~g~~-p~LpeLip~l~~~L~DKkplVRsITC  455 (885)
T KOG2023|consen  407 WKVREAGVLALGAIAEGCMQGFV-PHLPELIPFLLSLLDDKKPLVRSITC  455 (885)
T ss_pred             hhhhhhhHHHHHHHHHHHhhhcc-cchHHHHHHHHHHhccCccceeeeee
Confidence            99999999999999999999755 59999999999999999999998665

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=99.10  E-value=4e-10  Score=79.76  Aligned_cols=86  Identities=24%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             chhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576         76 NPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS  152 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D  152 (165)
                      |.++.|..+|..+|..+|.   .-++.++|.|-..+.++|||.|++|+=||+.|+..+...++. +.+.|...+++.+.|
T Consensus         1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D   79 (97)
T PF12755_consen    1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSAD   79 (97)
T ss_pred             CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcC
Confidence            4578889999999999995   356778888889999999999999999999999988876654 899999999999999


Q ss_pred             CCHHHHHHHH
Q psy12576        153 PDTQIRVAAL  162 (165)
Q Consensus       153 ~~p~VR~aA~  162 (165)
                      |+++||++|.
T Consensus        80 ~d~~Vr~~a~   89 (97)
T PF12755_consen   80 PDENVRSAAE   89 (97)
T ss_pred             CchhHHHHHH
Confidence            9999999995

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.99  E-value=7e-10  Score=69.84  Aligned_cols=52  Identities=21%  Similarity=0.129  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       113 w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |+.|++|+++||.+++++... ...+++.+++.++..|+|+++.||.+|+.||
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL   52 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQDDDDSVRAAAAWAL   52 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            899999999999999999885 4458999999999999999999999999875

...

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.90  E-value=1.5e-09  Score=76.77  Aligned_cols=50  Identities=18%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +|++|++++++++.|.... ...+++.|++.|++.+.|+++|||++||++|
T Consensus         2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL   51 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEAL   51 (97)
T ss_pred             chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            6999999999999999986 5569999999999999999999999999985

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.89  E-value=2.7e-08  Score=78.99  Aligned_cols=132  Identities=17%  Similarity=0.188  Sum_probs=91.3

Q ss_pred             chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHH
Q psy12576          4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGV   83 (165)
Q Consensus         4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~   83 (165)
                      ....++..|++++..++..-.                     ..+....+.++|.|+..+.+..       -..+.+|..
T Consensus        65 ~Rs~v~~~A~~~l~~l~~~l~---------------------~~~~~~~~~~l~~Ll~~~~~~~-------~~i~~~a~~  116 (228)
T PF12348_consen   65 LRSKVSKTACQLLSDLARQLG---------------------SHFEPYADILLPPLLKKLGDSK-------KFIREAANN  116 (228)
T ss_dssp             H---HHHHHHHHHHHHHHHHG---------------------GGGHHHHHHHHHHHHHGGG----------HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHh---------------------HhHHHHHHHHHHHHHHHHcccc-------HHHHHHHHH
Confidence            344577888888888886410                     1244445678899999888532       256889999


Q ss_pred             HHHHHHHHcCCcchhhH-HHHHhhhcccCchHHHHHHHHHHHHhhcCCc--chhchH--hHHHHHHHHHhhcCCCCHHHH
Q psy12576         84 CLMLLSSCCEEDMVPHI-LPFVNANIEHADWRHRDAALMSFGAILVRPS--FIITIS--ERNFIMEVVCEATQSPDTQIR  158 (165)
Q Consensus        84 ~Ld~la~~~~~~i~~~v-l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~--~~~~~~--~l~~il~~v~~~l~D~~p~VR  158 (165)
                      ||+.+...++  ..+.+ ++++...+.+.+|..|..++..+..+++..+  ......  .++.+++.+.+++.|++|.||
T Consensus       117 ~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR  194 (228)
T PF12348_consen  117 ALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVR  194 (228)
T ss_dssp             HHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHH
T ss_pred             HHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHH
Confidence            9999999988  22334 6778889999999999999999999998777  222222  368999999999999999999


Q ss_pred             HHHHhcC
Q psy12576        159 VAALQCL  165 (165)
Q Consensus       159 ~aA~~al  165 (165)
                      .+|..|+
T Consensus       195 ~~Ar~~~  201 (228)
T PF12348_consen  195 EAARECL  201 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9997763

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2171|consensus

Probab=98.75  E-value=2.5e-08  Score=94.04  Aligned_cols=108  Identities=22%  Similarity=0.301  Sum_probs=90.6

Q ss_pred             HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      .+|.+++.+-.++...       +|.-++||..+|..++.-+++.   .+|.+++.|-+.+++++++.|.||+.|+|+++
T Consensus       345 v~p~~~~~l~~~l~S~-------~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~s  417 (1075)
T KOG2171|consen  345 VLPPLFEALEAMLQST-------EWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMS  417 (1075)
T ss_pred             ehHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence            3445555555555543       4999999999999999988864   68999999999999999999999999999999


Q ss_pred             cCCcchhchHhHHHHHHHHHhhcCC-CCHHHHHHHHhcC
Q psy12576        128 VRPSFIITISERNFIMEVVCEATQS-PDTQIRVAALQCL  165 (165)
Q Consensus       128 EG~~~~~~~~~l~~il~~v~~~l~D-~~p~VR~aA~~al  165 (165)
                      ....+.+.+++...+.|.++..+.| .++||+.+|..||
T Consensus       418 tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al  456 (1075)
T KOG2171|consen  418 TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAAL  456 (1075)
T ss_pred             hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHH
Confidence            9998888877888888899988875 5689999998764

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.52  E-value=3.1e-07  Score=64.49  Aligned_cols=105  Identities=21%  Similarity=0.115  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .++|.++++|.+.       +|.....|..+|..++...+.   .++. .++|.+.+.+.+++++.|+.++.+|+.++.+
T Consensus         7 ~~i~~l~~~l~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           7 GGLPALVSLLSSS-------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG   79 (120)
T ss_pred             CChHHHHHHHHcC-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence            3677788877643       278888899999988876432   3343 6677777778889999999999999999998


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-....+++.+.+.+.+++..||..|+.+|
T Consensus        80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l  115 (120)
T cd00020          80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL  115 (120)
T ss_pred             cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHH
Confidence            765333223356899999999999999999998764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.31  E-value=4.8e-06  Score=56.17  Aligned_cols=86  Identities=24%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             HHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc
Q psy12576         56 VPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT  135 (165)
Q Consensus        56 ~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~  135 (165)
                      +|.|++.|.+.+      +|..+..+..+|.    .++   -+.++|.+.+.+++++|..|.+|+.++|.+.        
T Consensus         1 i~~L~~~l~~~~------~~~vr~~a~~~L~----~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------   59 (88)
T PF13646_consen    1 IPALLQLLQNDP------DPQVRAEAARALG----ELG---DPEAIPALIELLKDEDPMVRRAAARALGRIG--------   59 (88)
T ss_dssp             HHHHHHHHHTSS------SHHHHHHHHHHHH----CCT---HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------
T ss_pred             CHHHHHHHhcCC------CHHHHHHHHHHHH----HcC---CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence            467777775422      3677666665555    223   2345555666668999999999999999884        


Q ss_pred             hHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576        136 ISERNFIMEVVCEATQ-SPDTQIRVAALQCL  165 (165)
Q Consensus       136 ~~~l~~il~~v~~~l~-D~~p~VR~aA~~al  165 (165)
                         -+..++.+.+.+. |++..||.+|..+|
T Consensus        60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL   87 (88)
T PF13646_consen   60 ---DPEAIPALIKLLQDDDDEVVREAAAEAL   87 (88)
T ss_dssp             ---HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence               2446778888876 56788999998875

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=98.22  E-value=4.8e-06  Score=71.79  Aligned_cols=110  Identities=21%  Similarity=0.341  Sum_probs=72.3

Q ss_pred             chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHH-HHHHHhhccCCC------C------
Q psy12576          4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVP-ILTQKLTKQEEL------D------   70 (165)
Q Consensus         4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p-~ll~~l~~~~ed------~------   70 (165)
                      ..+..+..|+.|.+++++.-.-     .       . .-..+    ..+..|+. +++..|+-.++|      |      
T Consensus       154 ~~D~lv~~al~FL~~v~~~~~~-----~-------~-lf~~~----~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIr  216 (370)
T PF08506_consen  154 KYDILVSKALQFLSSVAESPHH-----K-------N-LFENK----PHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIR  216 (370)
T ss_dssp             GGHHHHHHHHHHHHHHHTSHHH-----H-------T-TT-SH----HHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHcchhH-----H-------H-HhCCH----HHHHHHHHHhccCccCCCHHHHHHHccCHHHHHH
Confidence            4566788999999998864210     0       0 00011    22333333 445555533322      1      


Q ss_pred             ---C-cCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc------cCchHHHHHHHHHHHHhhcCC
Q psy12576         71 ---D-EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        71 ---d-ddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~------~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                         | .|--++++||...|-.|+...++.+.+.++.+|+..++      +.+|+.+++|+.-+|+++.-.
T Consensus       217 rd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~  286 (370)
T PF08506_consen  217 RDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG  286 (370)
T ss_dssp             HHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred             hhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence               1 12358999999999999999998899999999999887      678999999999999998533

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1241|consensus

Probab=98.21  E-value=5.7e-06  Score=75.92  Aligned_cols=110  Identities=29%  Similarity=0.334  Sum_probs=82.4

Q ss_pred             HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcch----hhHHHHHhhhccc--CchHHHHHHHHHH
Q psy12576         50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMV----PHILPFVNANIEH--ADWRHRDAALMSF  123 (165)
Q Consensus        50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~----~~vl~~i~~~l~~--~dw~~R~Aa~~Al  123 (165)
                      +.||.|++.|..+.....      .-....++..+|.++.+.+...++    ..++.-|-.+...  ++-+.|-||+-||
T Consensus       125 n~wp~li~~lv~nv~~~~------~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL  198 (859)
T KOG1241|consen  125 NQWPELIVTLVSNVGEEQ------ASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNAL  198 (859)
T ss_pred             hhCHHHHHHHHHhccccc------chHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHH
Confidence            468888888888877422      124456666666666666553333    2355555555543  5678999999999


Q ss_pred             HHhhcCCcch-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        124 GAILVRPSFI-ITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       124 g~i~EG~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ..-+|+...+ ..+.+++.||++||+.++.|+.+||.||++||
T Consensus       199 ~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Cl  241 (859)
T KOG1241|consen  199 YNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCL  241 (859)
T ss_pred             HHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHH
Confidence            9999999864 46668999999999999999999999999996

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.06  E-value=5.6e-06  Score=46.29  Aligned_cols=31  Identities=26%  Similarity=0.281  Sum_probs=27.5

Q ss_pred             HHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576        100 ILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus       100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      ++|.+.+.++|++|+.|.+|+.+||.|++.|
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~   31 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC   31 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence            5788889999999999999999999999876

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.03  E-value=7.9e-06  Score=57.24  Aligned_cols=65  Identities=17%  Similarity=0.086  Sum_probs=51.6

Q ss_pred             HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhH-HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISER-NFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l-~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +++.+.+.+.+.+|..|+.|+.+++.++.+..+... ..+ ..++|.+++.+.|++++||..|+.+|
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L   73 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQ-AVVEAGGLPALVQLLKSEDEEVVKAALWAL   73 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCChHHHHHHHhCCCHHHHHHHHHHH
Confidence            445555566778899999999999999998544322 233 38999999999999999999998764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.98  E-value=4.6e-06  Score=46.66  Aligned_cols=24  Identities=25%  Similarity=0.638  Sum_probs=21.3

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        142 IMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       142 il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |+|.+++.++||+++||.+|++||
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l   24 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECL   24 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHH
Confidence            689999999999999999999885

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1242|consensus

Probab=97.98  E-value=3.1e-05  Score=69.54  Aligned_cols=104  Identities=18%  Similarity=0.189  Sum_probs=80.6

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI  133 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~  133 (165)
                      .++|.+|...-+.       .-..+.+|..+...+-.+++.+=++.++|-.-.++....||-+.|++-.+|++++ |.+.
T Consensus       216 ~~lp~il~~~~d~-------~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~  287 (569)
T KOG1242|consen  216 PILPSILTNFGDK-------INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPK  287 (569)
T ss_pred             hhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchH
Confidence            4555555544422       2467889999999999998876666666555555555599999999999997666 5555


Q ss_pred             hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        134 ITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       134 ~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .+...++.++|.+.+-|.|-+|.||.|+..||
T Consensus       288 qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l  319 (569)
T KOG1242|consen  288 QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL  319 (569)
T ss_pred             HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence            77778999999999999999999999998875

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.97  E-value=1.7e-05  Score=53.37  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             HHHhhhc-ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        102 PFVNANI-EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       102 ~~i~~~l-~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |++-+.+ .+++|..|..++.+||.+           .-+..++.+.+.++|++|.||.+|+.+|
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL   55 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARAL   55 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            5555666 799999999999999932           2346688899999999999999998764

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.85  E-value=8.5e-05  Score=57.47  Aligned_cols=84  Identities=15%  Similarity=0.136  Sum_probs=68.6

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc-CCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV-RPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E-G~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      ..+..+..+|.-|+..+| .++.+.+|.+...+.|+++..|+.|+++|..+.. |.-+     -..+++..++..+.|++
T Consensus         3 ~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~~l~D~~   76 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILKLLVDEN   76 (178)
T ss_pred             HHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHHHHcCCC
Confidence            345667788888888888 5899999999999999999999999999999664 3322     34566677788889999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      |.||..|..++
T Consensus        77 ~~Ir~~A~~~~   87 (178)
T PF12717_consen   77 PEIRSLARSFF   87 (178)
T ss_pred             HHHHHHHHHHH
Confidence            99999997653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.78  E-value=7.5e-05  Score=65.68  Aligned_cols=79  Identities=19%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHH-HHHHHHhhcCCCCHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNF-IMEVVCEATQSPDTQIRVA  160 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~-il~~v~~~l~D~~p~VR~a  160 (165)
                      +-+|..|+......+.+.+++.|.+.+.|++|..|++|++|+..+.....+.     .+. +++.+.+.+.|++|.|+.+
T Consensus        97 ~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~~~l~~lL~d~~~~V~~~  171 (526)
T PF01602_consen   97 GLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELIPKLKQLLSDKDPSVVSA  171 (526)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHHHHHHHHTTHSSHHHHHH
T ss_pred             HHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHhhhccCCcchhHHH
Confidence            4458888887777899999999999999999999999999999999765442     222 7899999999999999999


Q ss_pred             HHhcC
Q psy12576        161 ALQCL  165 (165)
Q Consensus       161 A~~al  165 (165)
                      |+.++
T Consensus       172 a~~~l  176 (526)
T PF01602_consen  172 ALSLL  176 (526)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK09687 putative lyase; Provisional

Probab=97.76  E-value=0.00016  Score=60.03  Aligned_cols=65  Identities=12%  Similarity=-0.055  Sum_probs=29.2

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHh
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAI  126 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i  126 (165)
                      .+|.|..++.+.      .++.++.+|..+|..+...- ..-.+.+++.....+.+++|+.|.+++.|||.+
T Consensus        91 a~~~L~~l~~~D------~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~  155 (280)
T PRK09687         91 VFNILNNLALED------KSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI  155 (280)
T ss_pred             HHHHHHHHHhcC------CCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc
Confidence            456665554421      12455555554444331100 011233444444455555555665555555533

>KOG2023|consensus

Probab=97.53  E-value=0.00016  Score=66.11  Aligned_cols=107  Identities=16%  Similarity=0.251  Sum_probs=86.3

Q ss_pred             HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcch---hhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMV---PHILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~---~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      .++.++|.|=+.|..       ++|-.+.++--+|..+|.-+-+-++   |.+.||+-+.+.+.-+-.|.-..++|+--+
T Consensus       390 lL~~l~PlLk~~L~~-------~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys  462 (885)
T KOG2023|consen  390 LLPILLPLLKEHLSS-------EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS  462 (885)
T ss_pred             HHHHHHHHHHHHcCc-------chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence            666677776666665       3699999999999999998776554   557899999999999999999999999666


Q ss_pred             cCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        128 VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       128 EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      --....-..+++..+|.-+++.+-|.+.+|+.|||-|
T Consensus       463 ~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsA  499 (885)
T KOG2023|consen  463 KWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSA  499 (885)
T ss_pred             hhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            4333333556788889989999999999999999976

>PRK09687 putative lyase; Provisional

Probab=97.50  E-value=0.0006  Score=56.62  Aligned_cols=76  Identities=17%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP  153 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~  153 (165)
                      +|.++.++..+|.    .+++   +..++.+...+.+++|..|.+|+.+||.+..+         -+.+.+.+...+.|+
T Consensus       141 ~~~VR~~a~~aLg----~~~~---~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~  204 (280)
T PRK09687        141 STNVRFAVAFALS----VIND---EAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDK  204 (280)
T ss_pred             CHHHHHHHHHHHh----ccCC---HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCC
Confidence            5788888777773    2332   33445555566689999999999999998322         224566777888899


Q ss_pred             CHHHHHHHHhcC
Q psy12576        154 DTQIRVAALQCL  165 (165)
Q Consensus       154 ~p~VR~aA~~al  165 (165)
                      ++.||.+|..+|
T Consensus       205 ~~~VR~~A~~aL  216 (280)
T PRK09687        205 NEEIRIEAIIGL  216 (280)
T ss_pred             ChHHHHHHHHHH
Confidence            999998887654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.44  E-value=7.2e-05  Score=46.63  Aligned_cols=52  Identities=27%  Similarity=0.333  Sum_probs=43.9

Q ss_pred             CchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHh
Q psy12576         75 WNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAI  126 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i  126 (165)
                      |..+.+|..+|..++...++   ..++.++|.+...+.+++...|.+|+.|||.|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            56678888888887777774   46788999999999999999999999999976

...

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.37  E-value=0.0034  Score=55.21  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhh-HHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPH-ILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~-vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      .+.++|.+.+.+...       .+.+++.|..|+-.+....|+ .++. +++.+.+.+.++++..+.+|+.++..+  -+
T Consensus       112 ~~~l~~~v~~ll~~~-------~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~  181 (526)
T PF01602_consen  112 AEPLIPDVIKLLSDP-------SPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KC  181 (526)
T ss_dssp             HHHHHHHHHHHHHSS-------SHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HC
T ss_pred             hhHHHHHHHHHhcCC-------chHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--cc
Confidence            355666666666632       379999999999999999886 5555 789999999999999999999999999  22


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      .+......++.+.+.+++.+.+++|-++..++..
T Consensus       182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~  215 (526)
T PF01602_consen  182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRL  215 (526)
T ss_dssp             THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             CcchhhhhHHHHHHHhhhcccccchHHHHHHHHH
Confidence            2221114578888888888899999998877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.35  E-value=0.0023  Score=60.87  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP  153 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~  153 (165)
                      +|..+.+|..+|..+    |.   +..++.+...+.+++|..|++|+.+||.+ .|.         +...+.+...++|+
T Consensus       820 d~~VR~~Aa~aL~~l----~~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~---------~~a~~~L~~al~D~  882 (897)
T PRK13800        820 AWQVRQGAARALAGA----AA---DVAVPALVEALTDPHLDVRKAAVLALTRW-PGD---------PAARDALTTALTDS  882 (897)
T ss_pred             ChHHHHHHHHHHHhc----cc---cchHHHHHHHhcCCCHHHHHHHHHHHhcc-CCC---------HHHHHHHHHHHhCC
Confidence            466666666666533    21   12223444455677777777777777775 111         12345555667777


Q ss_pred             CHHHHHHHHhcC
Q psy12576        154 DTQIRVAALQCL  165 (165)
Q Consensus       154 ~p~VR~aA~~al  165 (165)
                      ++.||.+|..+|
T Consensus       883 d~~Vr~~A~~aL  894 (897)
T PRK13800        883 DADVRAYARRAL  894 (897)
T ss_pred             CHHHHHHHHHHH
Confidence            777777777654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.31  E-value=0.0023  Score=60.94  Aligned_cols=46  Identities=24%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             hhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        106 ANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       106 ~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ..+.++|+..|.+|+.+||.+..              .+.++..+.|+++.||.+|..+|
T Consensus       721 ~~L~D~d~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL  766 (897)
T PRK13800        721 AALGDPDHRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGL  766 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHH
Confidence            45667777777777777776421              12345667788888888777654

>KOG1991|consensus

Probab=96.93  E-value=0.0054  Score=58.19  Aligned_cols=107  Identities=24%  Similarity=0.257  Sum_probs=82.8

Q ss_pred             HHHHHHhhccCCCCC-----------------cCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc--------cC
Q psy12576         57 PILTQKLTKQEELDD-----------------EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE--------HA  111 (165)
Q Consensus        57 p~ll~~l~~~~ed~d-----------------ddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~--------~~  111 (165)
                      .++|.+|+-.|+|.+                 +|-.+|..||..+|-.++..=|+..+|.+++|+..-+.        ..
T Consensus       351 ~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~  430 (1010)
T KOG1991|consen  351 DVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNK  430 (1010)
T ss_pred             HhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCcc
Confidence            456777776665521                 23358888999999999999988999999999988766        35


Q ss_pred             chHHHHHHHHHHHHhhcCCcchh-chHhH-HHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576        112 DWRHRDAALMSFGAILVRPSFII-TISER-NFIMEVVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus       112 dw~~R~Aa~~Alg~i~EG~~~~~-~~~~l-~~il~~v~~~l~D~~p~VR~aA~~  163 (165)
                      ++|..++|+.++|++++-..++. .++.+ ..+++.|.+.+++|-=..|.-||.
T Consensus       431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~  484 (1010)
T KOG1991|consen  431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW  484 (1010)
T ss_pred             ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence            68899999999999998776642 23345 455678889999999888888874

>KOG0212|consensus

Probab=96.93  E-value=0.00097  Score=60.03  Aligned_cols=88  Identities=18%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             hhhHHHHHHHHHHHHcC-C---cchhhHHH-HHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576         77 PCKAAGVCLMLLSSCCE-E---DMVPHILP-FVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ  151 (165)
Q Consensus        77 ~~~~a~~~Ld~la~~~~-~---~i~~~vl~-~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~  151 (165)
                      .+|+|+.-|..+...+- +   .-+.-++. .+..+..+++-..|++|++++++++-|-+.+... |+..|++-|+..+.
T Consensus        16 kRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y~~~iv~Pv~~cf~   94 (675)
T KOG0212|consen   16 KRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-YLEKIVPPVLNCFS   94 (675)
T ss_pred             HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-HHHHhhHHHHHhcc
Confidence            45555555555543322 1   12233333 5567788888888999999999998877775554 99999999999999


Q ss_pred             CCCHHHHHHHHhcC
Q psy12576        152 SPDTQIRVAALQCL  165 (165)
Q Consensus       152 D~~p~VR~aA~~al  165 (165)
                      |++.+|||.||+.|
T Consensus        95 D~d~~vRyyACEsL  108 (675)
T KOG0212|consen   95 DQDSQVRYYACESL  108 (675)
T ss_pred             CccceeeeHhHHHH
Confidence            99999999999864

>KOG0915|consensus

Probab=96.90  E-value=0.0029  Score=62.26  Aligned_cols=56  Identities=20%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             hcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576        107 NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus       107 ~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~  162 (165)
                      ++.+..||.|+|+++|+.-+.-|....+...+++.+...+.+...|=+..||.||=
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~ 1102 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAAD 1102 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999999999999999887777778999999999999999999999983

>KOG0166|consensus

Probab=96.86  E-value=0.011  Score=53.11  Aligned_cols=114  Identities=16%  Similarity=0.099  Sum_probs=87.5

Q ss_pred             cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc-CC---cchhhHHHHHhhhcccCchHHHHHH
Q psy12576         44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC-EE---DMVPHILPFVNANIEHADWRHRDAA  119 (165)
Q Consensus        44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~-~~---~i~~~vl~~i~~~l~~~dw~~R~Aa  119 (165)
                      ++.|+.+  ..+++.|+.++...+.      -+..+.+.=+|..|-..- |.   ..+.++||-+...+.+.|.....=|
T Consensus       186 ~Rd~vl~--~g~l~pLl~~l~~~~~------~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da  257 (514)
T KOG0166|consen  186 CRDYVLS--CGALDPLLRLLNKSDK------LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDA  257 (514)
T ss_pred             HHHHHHh--hcchHHHHHHhccccc------hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            4556554  4567778888875431      245566666666665444 21   4678899999999999999999999


Q ss_pred             HHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        120 LMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       120 ~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ++|++.+.+|..+.+....--.++|.++..|..+.+.|+..|+.++
T Consensus       258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai  303 (514)
T KOG0166|consen  258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI  303 (514)
T ss_pred             HHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence            9999999999999765444567899999999999999999988764

>KOG2956|consensus

Probab=96.84  E-value=0.01  Score=52.50  Aligned_cols=87  Identities=23%  Similarity=0.176  Sum_probs=70.5

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      -+...|+.-|+-.+|++.|-.-+-.+-|.|..    .|-..--|++..+-=+.|+.+...+-..++.|+|.++++..++.
T Consensus       386 ~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~S  461 (516)
T KOG2956|consen  386 EVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTS  461 (516)
T ss_pred             hHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCch
Confidence            45667788889999999996655555565544    55444456666888899999987777789999999999999999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      ..||.+|.+||
T Consensus       462 S~VRKtaVfCL  472 (516)
T KOG2956|consen  462 STVRKTAVFCL  472 (516)
T ss_pred             HHhhhhHHHhH
Confidence            99999999997

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.84  E-value=0.0031  Score=49.86  Aligned_cols=92  Identities=16%  Similarity=0.113  Sum_probs=64.4

Q ss_pred             CCCchhhHHHHHHHHHHHHc-CCc----chh---hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576         73 DDWNPCKAAGVCLMLLSSCC-EED----MVP---HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIME  144 (165)
Q Consensus        73 dew~~~~~a~~~Ld~la~~~-~~~----i~~---~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~  144 (165)
                      .+|+.+..|..-|..+...- +..    +++   .++..+...+.|..-..-..|+.+++.++.+.+.. ..++.+.++|
T Consensus        19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~   97 (228)
T PF12348_consen   19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-FEPYADILLP   97 (228)
T ss_dssp             SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-GHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-HHHHHHHHHH
Confidence            36999998888888886665 222    222   23355667777877788899999999999988886 5678999999


Q ss_pred             HHHhhcCCCCHHHHHHHHhcC
Q psy12576        145 VVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       145 ~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .+++.+.|+...||.+|..||
T Consensus        98 ~Ll~~~~~~~~~i~~~a~~~L  118 (228)
T PF12348_consen   98 PLLKKLGDSKKFIREAANNAL  118 (228)
T ss_dssp             HHHHGGG---HHHHHHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHH
Confidence            999999999999999998874

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PTZ00429 beta-adaptin; Provisional

Probab=96.84  E-value=0.01  Score=55.70  Aligned_cols=80  Identities=10%  Similarity=0.086  Sum_probs=63.0

Q ss_pred             HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576         83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus        83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~  162 (165)
                      -+|-.|+..-...+++.+++.+.+.+.+.++..|++|++|++-+..-..+..   .-..+++.+.+.+.|++|.|..+|+
T Consensus       124 LALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv---~~~~~~~~L~~LL~D~dp~Vv~nAl  200 (746)
T PTZ00429        124 LAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF---YQQDFKKDLVELLNDNNPVVASNAA  200 (746)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc---cccchHHHHHHHhcCCCccHHHHHH
Confidence            4577888776678999999999999999999999999999999986444321   1123455566678899999999998


Q ss_pred             hcC
Q psy12576        163 QCL  165 (165)
Q Consensus       163 ~al  165 (165)
                      .+|
T Consensus       201 ~aL  203 (746)
T PTZ00429        201 AIV  203 (746)
T ss_pred             HHH
Confidence            653

>KOG0213|consensus

Probab=96.69  E-value=0.0053  Score=57.23  Aligned_cols=84  Identities=14%  Similarity=0.306  Sum_probs=68.9

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccC-chHHHHHHHHHHHHhhc--CCcchhchHhHHHHHHHHHhhcCC
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA-DWRHRDAALMSFGAILV--RPSFIITISERNFIMEVVCEATQS  152 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~E--G~~~~~~~~~l~~il~~v~~~l~D  152 (165)
                      .++..-+.+....|.++|   +|.++||++.--.|- .|+-|+.++...-.|++  ||+  ++ +|+..++.+|-.++.|
T Consensus       491 YVRnttarafavvasalg---ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcs--vl-phl~~lv~ii~~gl~D  564 (1172)
T KOG0213|consen  491 YVRNTTARAFAVVASALG---IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS--VL-PHLKPLVKIIEHGLKD  564 (1172)
T ss_pred             HHHHHHHHHHHHHHHHhC---cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcch--hh-hhhHHHHHHHHHhhcc
Confidence            344444455667888888   889999999888876 89999999999998887  665  34 5899999999999999


Q ss_pred             CCHHHHHHHHhcC
Q psy12576        153 PDTQIRVAALQCL  165 (165)
Q Consensus       153 ~~p~VR~aA~~al  165 (165)
                      .+..||.-+..||
T Consensus       565 e~qkVR~itAlal  577 (1172)
T KOG0213|consen  565 EQQKVRTITALAL  577 (1172)
T ss_pred             cchhhhhHHHHHH
Confidence            9999998877653

>KOG1242|consensus

Probab=96.62  E-value=0.0098  Score=53.82  Aligned_cols=97  Identities=15%  Similarity=0.212  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..++|.++..|.+       +-|....++.+.|+.|+.+-|+   ..+|.++|-+.+-+.+..+..|+||+-++-.+.+-
T Consensus       253 K~llpsll~~l~~-------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv  325 (569)
T KOG1242|consen  253 KLLLPSLLGSLLE-------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV  325 (569)
T ss_pred             hHhhhhhHHHHHH-------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            3455555555543       2599899999999999999996   36899999999999999999999999888877765


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVA  160 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a  160 (165)
                      ...    +.+..++|.++.++.||.-+|..+
T Consensus       326 idN----~dI~~~ip~Lld~l~dp~~~~~e~  352 (569)
T KOG1242|consen  326 IDN----PDIQKIIPTLLDALADPSCYTPEC  352 (569)
T ss_pred             hcc----HHHHHHHHHHHHHhcCcccchHHH
Confidence            543    358889999999999999776654

>PTZ00429 beta-adaptin; Provisional

Probab=96.57  E-value=0.012  Score=55.09  Aligned_cols=83  Identities=17%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      -...+-..-.|..+|..-++ +.-.+.+.+.+-+.|+|+..|--|+-++|+|..       ...++.+++.|.+++.|++
T Consensus        82 ~elKKLvYLYL~~ya~~~pe-lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~i~e~l~~~lkk~L~D~~  153 (746)
T PTZ00429         82 LELKKLVYLYVLSTARLQPE-KALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------SSVLEYTLEPLRRAVADPD  153 (746)
T ss_pred             HHHHHHHHHHHHHHcccChH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHhcCCC
Confidence            34455555555555443333 445567888889999999999999999998763       2357888999999999999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      |-||.+|..|+
T Consensus       154 pYVRKtAalai  164 (746)
T PTZ00429        154 PYVRKTAAMGL  164 (746)
T ss_pred             HHHHHHHHHHH
Confidence            99999998774

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.39  E-value=0.0079  Score=52.36  Aligned_cols=70  Identities=16%  Similarity=0.287  Sum_probs=61.2

Q ss_pred             chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ++..++|.+.+.+.+.+-..|..-+.||+.|.......+..++++.++|.++++|.-+++.||.+++++|
T Consensus       320 ~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL  389 (415)
T PF12460_consen  320 FFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETL  389 (415)
T ss_pred             HHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5667777777777776666888999999999999998888889999999999999999999999998764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=96.35  E-value=0.0076  Score=36.01  Aligned_cols=41  Identities=12%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             HHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        122 SFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       122 Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +++.+.+--.. .+  ..+.+...|.+++.|+.|.||.||.+.|
T Consensus         2 ~l~~iv~~dp~-ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    2 ALSSIVEKDPT-LL--DSSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             hHHHHHhcCcc-cc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            45666653333 23  2568899999999999999999998764

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.30  E-value=0.023  Score=53.19  Aligned_cols=75  Identities=13%  Similarity=0.138  Sum_probs=43.2

Q ss_pred             HHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHH--HHHHHhhcCCCCHHHHHHHH
Q psy12576         85 LMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFI--MEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus        85 Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~i--l~~v~~~l~D~~p~VR~aA~  162 (165)
                      |-.|+..=-+++++.+++-|.+.+.+++.+.|+.|++|++.+-.-     -....+..  .......+.|++|.|-.+|+
T Consensus       113 lR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-----d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl  187 (757)
T COG5096         113 LRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-----DKDLYHELGLIDILKELVADSDPIVIANAL  187 (757)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-----CHhhhhcccHHHHHHHHhhCCCchHHHHHH
Confidence            444443333567777777777777777777777777777766531     11122333  23333334477777777776


Q ss_pred             hc
Q psy12576        163 QC  164 (165)
Q Consensus       163 ~a  164 (165)
                      .+
T Consensus       188 ~s  189 (757)
T COG5096         188 AS  189 (757)
T ss_pred             HH
Confidence            54

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.30  E-value=0.021  Score=52.11  Aligned_cols=83  Identities=33%  Similarity=0.418  Sum_probs=59.9

Q ss_pred             HHHHHHHHHcCCc----ch---hhHH-HHHhhhc-ccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcCC
Q psy12576         83 VCLMLLSSCCEED----MV---PHIL-PFVNANI-EHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQS  152 (165)
Q Consensus        83 ~~Ld~la~~~~~~----i~---~~vl-~~i~~~l-~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~D  152 (165)
                      ..|..+++++...    ++   ..++ ..+..-. ..++-+.|-||+-||.--+++.... -.+.+++.+|+++|+.++.
T Consensus       153 ~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~  232 (858)
T COG5215         153 ESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQG  232 (858)
T ss_pred             HHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccC
Confidence            3477778877731    11   1222 3332222 3467889999999999877766664 3555799999999999999


Q ss_pred             CCHHHHHHHHhcC
Q psy12576        153 PDTQIRVAALQCL  165 (165)
Q Consensus       153 ~~p~VR~aA~~al  165 (165)
                      |+..|+.||+-||
T Consensus       233 ~d~e~q~aafgCl  245 (858)
T COG5215         233 NDEELQHAAFGCL  245 (858)
T ss_pred             CcHHHHHHHHHHH
Confidence            9999999999885

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.29  E-value=0.021  Score=51.12  Aligned_cols=102  Identities=21%  Similarity=0.322  Sum_probs=75.2

Q ss_pred             HHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc
Q psy12576         57 PILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT  135 (165)
Q Consensus        57 p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~  135 (165)
                      ++++..+...+.       ..-..+..+|+.+-.... +.+.+...+++...+.+++...|.-++.+++.+++.......
T Consensus        41 ~~lf~~L~~~~~-------e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~  113 (503)
T PF10508_consen   41 PVLFDCLNTSNR-------EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQ  113 (503)
T ss_pred             HHHHHHHhhcCh-------HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            347777764321       112334455777655554 567899999999999999999999999999999876654222


Q ss_pred             hHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        136 ISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       136 ~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .-.=+.+++.|+..+.|++..|..+|..+|
T Consensus       114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L  143 (503)
T PF10508_consen  114 LLVDNELLPLIIQCLRDPDLSVAKAAIKAL  143 (503)
T ss_pred             HhcCccHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            112377899999999999999999998764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=96.09  E-value=0.1  Score=46.72  Aligned_cols=141  Identities=19%  Similarity=0.181  Sum_probs=93.6

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      +++|--+.+.++|....+|+...                   ...|+.+  ..+++.|.+++...++|++-  -+..-.+
T Consensus       212 ~~dDiLvqlnalell~~La~~~~-------------------g~~yL~~--~gi~~~L~~~l~~~~~dp~~--~~~~l~g  268 (503)
T PF10508_consen  212 DSDDILVQLNALELLSELAETPH-------------------GLQYLEQ--QGIFDKLSNLLQDSEEDPRL--SSLLLPG  268 (503)
T ss_pred             cCccHHHHHHHHHHHHHHHcChh-------------------HHHHHHh--CCHHHHHHHHHhccccCCcc--cchhhhh
Confidence            34555577788898888887421                   1234443  36888889988877655411  1222122


Q ss_pred             H-HHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hc----hHhHHHHHHHHHhhcCC
Q psy12576         82 G-VCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-IT----ISERNFIMEVVCEATQS  152 (165)
Q Consensus        82 ~-~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~----~~~l~~il~~v~~~l~D  152 (165)
                      . .....++..-|..   .+|.++..+...+.+.|...|.+|+=+||.|+--..-+ .+    ...++.++..+......
T Consensus       269 ~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~  348 (503)
T PF10508_consen  269 RMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS  348 (503)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence            1 2344556654433   45888888888999999999999999999998322221 11    22456778887888888


Q ss_pred             CCHHHHHHHHhcC
Q psy12576        153 PDTQIRVAALQCL  165 (165)
Q Consensus       153 ~~p~VR~aA~~al  165 (165)
                      ....+|..+++||
T Consensus       349 ~~~~lk~r~l~al  361 (503)
T PF10508_consen  349 GSTELKLRALHAL  361 (503)
T ss_pred             CchHHHHHHHHHH
Confidence            8888999998875

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1820|consensus

Probab=95.91  E-value=0.13  Score=48.70  Aligned_cols=102  Identities=12%  Similarity=0.136  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc-
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF-  132 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~-  132 (165)
                      .++|.+|..+.+..       -++..+...|+|.+...++   +..++++|...+.+.+++.|.--.+.|+.-..+... 
T Consensus       336 ~v~p~lld~lkekk-------~~l~d~l~~~~d~~~ns~~---l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKK-------SELRDALLKALDAILNSTP---LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             hhcchHHHHhhhcc-------HHHHHHHHHHHHHHHhccc---HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            46777777777543       5788899999999988665   555667777788899999997778888877765552 


Q ss_pred             hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        133 IITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ...+..++.++|.++...+|-+.-||.||++|+
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~  438 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAV  438 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHH
Confidence            233346899999999999999999999999874

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.53  E-value=0.019  Score=52.75  Aligned_cols=86  Identities=14%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccC-chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA-DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      .++..-+.+....|.++|   ++.++||++..-.|- .|.-|+.++-..-.|++..+...+ +|+..+|..|-..+.|.+
T Consensus       296 YVRnvt~ra~~vva~alg---v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l-~hl~~l~~ci~~~l~D~~  371 (975)
T COG5181         296 YVRNVTGRAVGVVADALG---VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRL-SHLGPLLKCISKLLKDRS  371 (975)
T ss_pred             HHHHHHHHHHHHHHHhhC---cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHH-hhhhhHHHHHHHHhhccc
Confidence            344555555667788888   788899998888776 899999999999999984333233 589999999999999999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      ..||--+.++|
T Consensus       372 ~~vRi~tA~al  382 (975)
T COG5181         372 RFVRIDTANAL  382 (975)
T ss_pred             eeeeehhHhHH
Confidence            99998776653

>KOG1240|consensus

Probab=95.36  E-value=0.07  Score=52.05  Aligned_cols=116  Identities=16%  Similarity=0.124  Sum_probs=83.4

Q ss_pred             HHHHH-HHhHHHHHHHHHhhccCCCC---------CcCCCchhhHHHHHHHHHHHHcCCc-chhhHHHHHhhhcccCchH
Q psy12576         46 FYAKG-ALQYLVPILTQKLTKQEELD---------DEDDWNPCKAAGVCLMLLSSCCEED-MVPHILPFVNANIEHADWR  114 (165)
Q Consensus        46 ~~~~~-~~~~l~p~ll~~l~~~~ed~---------dddew~~~~~a~~~Ld~la~~~~~~-i~~~vl~~i~~~l~~~dw~  114 (165)
                      .++|+ .++.|.|++.=.-..+..|-         .|-||..+-|=-..|--++-.+|.. +-..++|++.+.|++++-.
T Consensus       592 ~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~  671 (1431)
T KOG1240|consen  592 PIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEA  671 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchh
Confidence            46666 44566666555444433221         2337998655555555556778854 6788999999999999988


Q ss_pred             HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576        115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus       115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~  163 (165)
                      .-.-|+-+|..+.+-  ....+..+-.|++.+...|..|+.=||++++-
T Consensus       672 Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~  718 (1431)
T KOG1240|consen  672 VIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLG  718 (1431)
T ss_pred             hHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHHHHH
Confidence            888888888877761  23566788999999999999999999999874

>KOG0211|consensus

Probab=95.35  E-value=0.21  Score=47.01  Aligned_cols=85  Identities=16%  Similarity=0.092  Sum_probs=53.1

Q ss_pred             CchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP  153 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~  153 (165)
                      ...+++|+.+|-.++..+| +.-...+.|-+-....+++|.+|.+-+-++..+++-++..+   ....++|.+.....||
T Consensus       532 ~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei---~~~~Llp~~~~l~~D~  608 (759)
T KOG0211|consen  532 YSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI---TCEDLLPVFLDLVKDP  608 (759)
T ss_pred             HHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH---HHHHHhHHHHHhccCC
Confidence            3566777777878888777 22222222222222233377788888887777777666532   3566777777777788


Q ss_pred             CHHHHHHHH
Q psy12576        154 DTQIRVAAL  162 (165)
Q Consensus       154 ~p~VR~aA~  162 (165)
                      .|.||-.++
T Consensus       609 vanVR~nva  617 (759)
T KOG0211|consen  609 VANVRINVA  617 (759)
T ss_pred             chhhhhhHH
Confidence            888777664

>KOG1967|consensus

Probab=95.28  E-value=0.11  Score=49.58  Aligned_cols=110  Identities=16%  Similarity=0.184  Sum_probs=74.5

Q ss_pred             HHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc---hhhHHHHHhhhcccCc---hHHHHHHHH
Q psy12576         48 AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM---VPHILPFVNANIEHAD---WRHRDAALM  121 (165)
Q Consensus        48 ~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i---~~~vl~~i~~~l~~~d---w~~R~Aa~~  121 (165)
                      +.+-+|.|+|+||+.|.-.|       -.++-....||..+-...+.-+   +..++|..-.--.+.+   -..|.+|+-
T Consensus       903 llp~~~~LlPLLLq~Ls~~D-------~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALq  975 (1030)
T KOG1967|consen  903 LLPQFPMLLPLLLQALSMPD-------VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQ  975 (1030)
T ss_pred             hccchhhHHHHHHHhcCCCc-------cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence            44456788999999887432       3344444555555443333211   2233333333333333   578999999


Q ss_pred             HHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        122 SFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       122 Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      +++++.+.-....+..+++.++..+.+-|.||.-.||.-|..|
T Consensus       976 cL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  976 CLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            9999999666656778999999999999999999999988654

>KOG0213|consensus

Probab=95.16  E-value=0.066  Score=50.22  Aligned_cols=125  Identities=12%  Similarity=0.179  Sum_probs=93.0

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      |+.++.|.-.+|.+.-+||+.                .|+..+    ..=|-.+.--|+++|..-.       =..+++|
T Consensus       893 knrheKVqen~IdLvg~Iadr----------------gpE~v~----aREWMRIcfeLlelLkahk-------K~iRRaa  945 (1172)
T KOG0213|consen  893 KNRHEKVQENCIDLVGTIADR----------------GPEYVS----AREWMRICFELLELLKAHK-------KEIRRAA  945 (1172)
T ss_pred             hhhHHHHHHHHHHHHHHHHhc----------------CcccCC----HHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            567888999999999999984                333111    1134456667777777421       1568899


Q ss_pred             HHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576         82 GVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVA  160 (165)
Q Consensus        82 ~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a  160 (165)
                      ...+..+|.++|. +|+-.+    -+|+..++-+.|-...+|++.++|-|+.+.       ++|.+.+--.-|+.-|++.
T Consensus       946 ~nTfG~IakaIGPqdVLatL----lnnLkvqeRq~RvcTtvaIaIVaE~c~pFt-------VLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen  946 VNTFGYIAKAIGPQDVLATL----LNNLKVQERQNRVCTTVAIAIVAETCGPFT-------VLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred             HhhhhHHHHhcCHHHHHHHH----HhcchHHHHHhchhhhhhhhhhhhhcCchh-------hhHHHHhhccCchhHHHHh
Confidence            9999999999994 455544    468999999999999999999999999863       3677777777888888876


Q ss_pred             HHhc
Q psy12576        161 ALQC  164 (165)
Q Consensus       161 A~~a  164 (165)
                      -+-+
T Consensus      1015 VLka 1018 (1172)
T KOG0213|consen 1015 VLKA 1018 (1172)
T ss_pred             HHHH
Confidence            5543

>KOG4413|consensus

Probab=94.95  E-value=0.24  Score=42.73  Aligned_cols=118  Identities=18%  Similarity=0.241  Sum_probs=84.8

Q ss_pred             HHHHHHh-HHHHHHHHHhhccCCCCC-cCC--CchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHH
Q psy12576         47 YAKGALQ-YLVPILTQKLTKQEELDD-EDD--WNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALM  121 (165)
Q Consensus        47 ~~~~~~~-~l~p~ll~~l~~~~ed~d-dde--w~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~  121 (165)
                      -++++++ +=+|.+..-|.-.++-.- +.|  -....---.||.+|=+... -++.|.++|-++..+.+++-..+--++.
T Consensus        25 SVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLack  104 (524)
T KOG4413|consen   25 SVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACK  104 (524)
T ss_pred             HHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHh
Confidence            3555555 336777777765332211 011  1122335678999988765 6899999999999999999999999999


Q ss_pred             HHHHhhcCCcchhchHh----HHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        122 SFGAILVRPSFIITISE----RNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       122 Alg~i~EG~~~~~~~~~----l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      .+|+|.|.|+.+-....    -..|++.++..+...+-.|-.||...
T Consensus       105 qigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAies  151 (524)
T KOG4413|consen  105 QIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIES  151 (524)
T ss_pred             hhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHH
Confidence            99999999996422222    25788888888889999999998753

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.94  E-value=0.5  Score=39.83  Aligned_cols=54  Identities=20%  Similarity=0.134  Sum_probs=46.2

Q ss_pred             chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        112 DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       112 dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +....-||+-+-|-++--+........+...+|.+...|..++..||-||-++|
T Consensus       199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEai  252 (309)
T PF05004_consen  199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAI  252 (309)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            467889999999999987777545567899999999999999999999998764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2259|consensus

Probab=94.89  E-value=0.32  Score=45.13  Aligned_cols=81  Identities=17%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT  155 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p  155 (165)
                      .++++|-..+-.||+.-|+ .-...+.|+...|+++.--.|.=|+.++-.|+.-.      ...+..|+.++..|.|..+
T Consensus       388 EVR~AAV~Sl~~La~ssP~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~  460 (823)
T KOG2259|consen  388 EVRRAAVASLCSLATSSPG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL------AIREEQLRQILESLEDRSV  460 (823)
T ss_pred             HHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCH
Confidence            6688999999999998885 44568889999999999999999999999998541      2456778888999999999


Q ss_pred             HHHHHHHh
Q psy12576        156 QIRVAALQ  163 (165)
Q Consensus       156 ~VR~aA~~  163 (165)
                      .||.++-+
T Consensus       461 dvRe~l~e  468 (823)
T KOG2259|consen  461 DVREALRE  468 (823)
T ss_pred             HHHHHHHH
Confidence            99998754

>KOG0166|consensus

Probab=94.84  E-value=0.073  Score=47.85  Aligned_cols=105  Identities=15%  Similarity=0.111  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc----chhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhc
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED----MVPHILPFVNANIE-HADWRHRDAALMSFGAILV  128 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~----i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~E  128 (165)
                      .++|.|..+|...+       -+....|..++..++..-...    +-..++|.+...+. ++.-..|+.|+++++.|.-
T Consensus       279 gvv~~LV~lL~~~~-------~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA  351 (514)
T KOG0166|consen  279 GVVPRLVDLLGHSS-------PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA  351 (514)
T ss_pred             cchHHHHHHHcCCC-------cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence            56777778777543       333334444433332222211    33557788888887 6667799999999999999


Q ss_pred             CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |..+.+..-.-..++|.+++.++..+-+.|.-|+-|+
T Consensus       352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI  388 (514)
T KOG0166|consen  352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI  388 (514)
T ss_pred             CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence            9998666555678999999999999999999887653

>KOG1943|consensus

Probab=94.82  E-value=0.14  Score=49.45  Aligned_cols=81  Identities=14%  Similarity=0.098  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHHHcCCcchhhHHHHHhhhc----ccCchHHHHHHHHHHHHhh-cCCcchhchHhHHHHHHHHHhhcCC
Q psy12576         78 CKAAGVCLMLLSSCCEEDMVPHILPFVNANI----EHADWRHRDAALMSFGAIL-VRPSFIITISERNFIMEVVCEATQS  152 (165)
Q Consensus        78 ~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l----~~~dw~~R~Aa~~Alg~i~-EG~~~~~~~~~l~~il~~v~~~l~D  152 (165)
                      +-+|++.+.+++..+|..+...++.-+-..+    .+..|+   .|++||+=++ .|.-   ....++.++|.|.++|.-
T Consensus       358 rWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~rGlL---lps~l~dVvplI~kaL~Y  431 (1133)
T KOG1943|consen  358 RWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALRGLL---LPSLLEDVVPLILKALHY  431 (1133)
T ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhhh
Confidence            4456677779999999545555444443322    345677   9999999887 4553   445689999999999963


Q ss_pred             CC--------HHHHHHHHhc
Q psy12576        153 PD--------TQIRVAALQC  164 (165)
Q Consensus       153 ~~--------p~VR~aA~~a  164 (165)
                      .+        ..||.|||+.
T Consensus       432 d~~~G~~s~G~~VRDaAcY~  451 (1133)
T KOG1943|consen  432 DVRRGQHSVGQHVRDAACYV  451 (1133)
T ss_pred             hhhhcccccccchHHHHHHH
Confidence            33        5699999874

>KOG0212|consensus

Probab=94.78  E-value=0.039  Score=50.02  Aligned_cols=86  Identities=21%  Similarity=0.117  Sum_probs=71.4

Q ss_pred             CchhhHHHHHHHHHHHHcCCcc---hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDM---VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ  151 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i---~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~  151 (165)
                      -|.++.+...|-..+.++|.+.   +..++|-|-..+.++|-+.|.=|+-++..|+-++...+. .+-+.|..++|+...
T Consensus        57 ~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~-~~Fn~iFdvL~klsa  135 (675)
T KOG0212|consen   57 ANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL-VYFNEIFDVLCKLSA  135 (675)
T ss_pred             cccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc-cchHHHHHHHHHHhc
Confidence            4677788888888888899433   344445556689999999999999999999999988655 489999999999999


Q ss_pred             CCCHHHHHHH
Q psy12576        152 SPDTQIRVAA  161 (165)
Q Consensus       152 D~~p~VR~aA  161 (165)
                      |+++.||.+|
T Consensus       136 Dsd~~V~~~a  145 (675)
T KOG0212|consen  136 DSDQNVRGGA  145 (675)
T ss_pred             CCccccccHH
Confidence            9999999987

>KOG2081|consensus

Probab=94.74  E-value=0.81  Score=41.49  Aligned_cols=142  Identities=16%  Similarity=0.259  Sum_probs=86.8

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccC-CCC---CcCCC-ch
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQE-ELD---DEDDW-NP   77 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~-ed~---dddew-~~   77 (165)
                      +.+.+++.-.+-||-.+.|.-.-.  ...           ......+.+..+++..+..-..... .++   +.++. ..
T Consensus       302 h~~~evie~SF~fW~~lse~l~~~--~~~-----------~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~f  368 (559)
T KOG2081|consen  302 HNDTEVIEASFNFWYSLSEELTLT--DDD-----------EALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEF  368 (559)
T ss_pred             CCchhhhhhhHHhhhhhHHHHhcc--ccH-----------HHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHH
Confidence            455678888889999999742110  000           1112345566678888888777544 111   11222 22


Q ss_pred             hhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576         78 CKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ  156 (165)
Q Consensus        78 ~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~  156 (165)
                      +...+..|--++-.+| ++.+..+.--+.+  .++.|..-+|++..+.+++--.+....+ .++.+|..+|+.=.  ...
T Consensus       369 R~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~-i~pevl~~i~nlp~--Q~~  443 (559)
T KOG2081|consen  369 RLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENT-IMPEVLKLICNLPE--QAP  443 (559)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccc-hHHHHHHHHhCCcc--chh
Confidence            3333444555566677 5666666655555  6788999999999999999877764443 46666666665432  223


Q ss_pred             HHHHHH
Q psy12576        157 IRVAAL  162 (165)
Q Consensus       157 VR~aA~  162 (165)
                      +|++++
T Consensus       444 ~~~ts~  449 (559)
T KOG2081|consen  444 LRYTSI  449 (559)
T ss_pred             HHHHHH
Confidence            998876

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.72  E-value=0.13  Score=43.94  Aligned_cols=81  Identities=15%  Similarity=0.182  Sum_probs=61.5

Q ss_pred             HHHHHHhHHHHHHHHHhhccCCC---CCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCc--hHHHHH
Q psy12576         47 YAKGALQYLVPILTQKLTKQEEL---DDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHAD--WRHRDA  118 (165)
Q Consensus        47 ~~~~~~~~l~p~ll~~l~~~~ed---~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~d--w~~R~A  118 (165)
                      ++..++..|+|.+++++....=.   +.++.|..+..|+..|..+...++.   .+.|.++..+.+.+.++.  ....++
T Consensus       251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG  330 (343)
T cd08050         251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG  330 (343)
T ss_pred             chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence            46667778999999988854311   1456799999999999999999994   477888866666666543  344899


Q ss_pred             HHHHHHHhh
Q psy12576        119 ALMSFGAIL  127 (165)
Q Consensus       119 a~~Alg~i~  127 (165)
                      |+.+|++++
T Consensus       331 Ai~GL~~lG  339 (343)
T cd08050         331 AIVGLSALG  339 (343)
T ss_pred             HHHHHHHhC
Confidence            999999885

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG1967|consensus

Probab=94.66  E-value=0.24  Score=47.27  Aligned_cols=110  Identities=18%  Similarity=0.240  Sum_probs=79.6

Q ss_pred             HHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc----hhhHHHHHhhhcccCchHHHHHHHHHH
Q psy12576         48 AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM----VPHILPFVNANIEHADWRHRDAALMSF  123 (165)
Q Consensus        48 ~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i----~~~vl~~i~~~l~~~dw~~R~Aa~~Al  123 (165)
                      -.+.+..++|.+.+....++.+       ....=..+|..+-.++|..+    +|-++|.+-+.++=+|.-.|-..+-.|
T Consensus       861 kQRfF~~ivP~l~~~~~t~~~~-------~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i  933 (1030)
T KOG1967|consen  861 KQRFFCDIVPILVSKFETAPGS-------QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTI  933 (1030)
T ss_pred             HHHHHHhhHHHHHHHhccCCcc-------chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhh
Confidence            3336778999999988854421       11111233444444666443    466889999999999999998888888


Q ss_pred             HHhhcCCcchhchHhHHHHHHHHHhhcCCCC---HHHHHHHHhcC
Q psy12576        124 GAILVRPSFIITISERNFIMEVVCEATQSPD---TQIRVAALQCL  165 (165)
Q Consensus       124 g~i~EG~~~~~~~~~l~~il~~v~~~l~D~~---p~VR~aA~~al  165 (165)
                      --...--.. ....|++.++|..+..-.|++   ..||..|++||
T Consensus       934 ~~~l~~~~t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL  977 (1030)
T KOG1967|consen  934 PMLLTESET-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCL  977 (1030)
T ss_pred             hHHHHhccc-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHH
Confidence            877654444 455689999999999988877   89999999996

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.59  E-value=0.33  Score=42.27  Aligned_cols=95  Identities=13%  Similarity=0.176  Sum_probs=71.0

Q ss_pred             HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc----hhhHHHHHhhhcccCchHHHHHHHHH
Q psy12576         47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM----VPHILPFVNANIEHADWRHRDAALMS  122 (165)
Q Consensus        47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i----~~~vl~~i~~~l~~~dw~~R~Aa~~A  122 (165)
                      |-.+.+..++|.+++.....++     +  ....-..+|..+-.++|..+    ++.++|.+-+.+..+|+..|.+++-+
T Consensus       316 ykQR~F~~~~p~L~~~~~~~~~-----~--~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~t  388 (415)
T PF12460_consen  316 YKQRFFTQVLPKLLEGFKEADD-----E--IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLET  388 (415)
T ss_pred             HhHHHHHHHHHHHHHHHhhcCh-----h--hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4444777888888877665431     1  23334556666677777554    46799999999999999999999999


Q ss_pred             HHHhhcCCcchhchHhHHHHHHHHHhh
Q psy12576        123 FGAILVRPSFIITISERNFIMEVVCEA  149 (165)
Q Consensus       123 lg~i~EG~~~~~~~~~l~~il~~v~~~  149 (165)
                      |-.+.+.-.+ ....|++.++|.+++.
T Consensus       389 L~~~l~~~~~-~i~~hl~sLI~~LL~l  414 (415)
T PF12460_consen  389 LKMILEEAPE-LISEHLSSLIPRLLKL  414 (415)
T ss_pred             HHHHHHcCHH-HHHHHHHHHHHHHHhc
Confidence            9999987755 4556999999988763

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1824|consensus

Probab=94.56  E-value=0.71  Score=44.53  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhc---ccCchHHHHHHHHHHHHhh
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANI---EHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~  127 (165)
                      .++..|+..|....      ..+.-+-.-+||..++...|.   .=++.++|++.++.   +..+=..|+..+-||++.+
T Consensus       212 ~li~~Ll~~L~~~~------q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl  285 (1233)
T KOG1824|consen  212 ELIEHLLKGLSNRT------QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL  285 (1233)
T ss_pred             HHHHHHHhccCCCC------chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence            45555555554321      223345567899999888884   34566667776666   6677789999999999999


Q ss_pred             cCCcchhchHhHHHHHHHHHhhcC-CCC
Q psy12576        128 VRPSFIITISERNFIMEVVCEATQ-SPD  154 (165)
Q Consensus       128 EG~~~~~~~~~l~~il~~v~~~l~-D~~  154 (165)
                      +-|...+. ++.+.|++.+++.+. |||
T Consensus       286 ~rcp~ei~-p~~pei~~l~l~yisYDPN  312 (1233)
T KOG1824|consen  286 RRCPKEIL-PHVPEIINLCLSYISYDPN  312 (1233)
T ss_pred             HhChhhhc-ccchHHHHHHHHHhccCCC
Confidence            99998766 589999999999987 887

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.53  E-value=0.13  Score=47.38  Aligned_cols=121  Identities=12%  Similarity=0.226  Sum_probs=90.0

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHH-HHHhHHHHHHHHHhhccCCCCCcCCC--chh
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAK-GALQYLVPILTQKLTKQEELDDEDDW--NPC   78 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~l~p~ll~~l~~~~ed~dddew--~~~   78 (165)
                      ++.++.|....|.|.-+||..                .|+     |+. +-|-.+.--|+.+|..         |  ..+
T Consensus       698 rnkh~Kv~~nti~lvg~I~~~----------------~pe-----yi~~rEWMRIcfeLvd~Lks---------~nKeiR  747 (975)
T COG5181         698 RNKHQKVVANTIALVGTICMN----------------SPE-----YIGVREWMRICFELVDSLKS---------WNKEIR  747 (975)
T ss_pred             hhhhHHHhhhHHHHHHHHHhc----------------Ccc-----cCCHHHHHHHHHHHHHHHHH---------hhHHHH
Confidence            567788888899999999974                232     111 1344456666677663         6  457


Q ss_pred             hHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576         79 KAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI  157 (165)
Q Consensus        79 ~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V  157 (165)
                      ++|...+..+|.++|. +++..+|    +|+..++-+.|-...+|+|.++|-|+.+.       ++|.+..--..|+.-|
T Consensus       748 R~A~~tfG~Is~aiGPqdvL~~Ll----nnLkvqeRq~RvctsvaI~iVae~cgpfs-------VlP~lm~dY~TPe~nV  816 (975)
T COG5181         748 RNATETFGCISRAIGPQDVLDILL----NNLKVQERQQRVCTSVAISIVAEYCGPFS-------VLPTLMSDYETPEANV  816 (975)
T ss_pred             HhhhhhhhhHHhhcCHHHHHHHHH----hcchHHHHHhhhhhhhhhhhhHhhcCchh-------hHHHHHhcccCchhHH
Confidence            8999999999999994 5555444    68999999999999999999999999852       3677777777888888


Q ss_pred             HHHHHh
Q psy12576        158 RVAALQ  163 (165)
Q Consensus       158 R~aA~~  163 (165)
                      ++.-+-
T Consensus       817 QnGvLk  822 (975)
T COG5181         817 QNGVLK  822 (975)
T ss_pred             HHhHHH
Confidence            876543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=94.50  E-value=0.21  Score=51.62  Aligned_cols=104  Identities=13%  Similarity=0.038  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..+|.|+++|...+       -+..+.|...|..|+..-.+.   |+ .-.+|.+.+.+.+++.+.|+.|++|+|.++-+
T Consensus       446 ggIp~LV~LL~s~s-------~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~  518 (2102)
T PLN03200        446 EGVQLLISLLGLSS-------EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH  518 (2102)
T ss_pred             CcHHHHHHHHcCCC-------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            35788888888532       355677777777776533321   22 23556666677788999999999999999975


Q ss_pred             CcchhchH-hHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITIS-ERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~-~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ... .... ....++|.+++.|.+.++++|..|..+|
T Consensus       519 ~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL  554 (2102)
T PLN03200        519 SED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTL  554 (2102)
T ss_pred             cHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            332 2211 1246888899999999999999887654

>TIGR02270 conserved hypothetical protein

Probab=94.38  E-value=0.27  Score=43.15  Aligned_cols=52  Identities=29%  Similarity=0.305  Sum_probs=37.4

Q ss_pred             HHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        103 FVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       103 ~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .+.+.++++++..|.+|+-++|.+...-.           ++.+...+.|++|.||.+|..+|
T Consensus       151 ~L~~~L~d~d~~Vra~A~raLG~l~~~~a-----------~~~L~~al~d~~~~VR~aA~~al  202 (410)
T TIGR02270       151 ALEAALTHEDALVRAAALRALGELPRRLS-----------ESTLRLYLRDSDPEVRFAALEAG  202 (410)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccccc-----------hHHHHHHHcCCCHHHHHHHHHHH
Confidence            44445568889999999999988774321           23344668899999999998653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1248|consensus

Probab=94.03  E-value=1.1  Score=43.96  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=79.0

Q ss_pred             HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHH-----HHcC-Cc---chhhHHHHHhhhcccCchHHHHHHH
Q psy12576         50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLS-----SCCE-ED---MVPHILPFVNANIEHADWRHRDAAL  120 (165)
Q Consensus        50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la-----~~~~-~~---i~~~vl~~i~~~l~~~dw~~R~Aa~  120 (165)
                      ...+.++|.++=.+...+       -..++.|.+||-.|.     ...| +.   ++..+++.|..++.....+.+-..+
T Consensus       734 ~~i~k~I~EvIL~~Ke~n-------~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~I  806 (1176)
T KOG1248|consen  734 DLIPKLIPEVILSLKEVN-------VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDI  806 (1176)
T ss_pred             HHHHHHHHHHHHhccccc-------HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            344556665544442211       244677888888876     3345 23   7778888888898888888887779


Q ss_pred             HHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576        121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus       121 ~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~  163 (165)
                      +|++.|+---...+....++.++.+||-.+....+.||.||..
T Consensus       807 vai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~  849 (1176)
T KOG1248|consen  807 VAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIG  849 (1176)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999544555556689999999999999999999999974

>KOG1248|consensus

Probab=94.01  E-value=1.5  Score=42.96  Aligned_cols=81  Identities=6%  Similarity=0.058  Sum_probs=67.5

Q ss_pred             HHHHHHHHH----cCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576         83 VCLMLLSSC----CEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIR  158 (165)
Q Consensus        83 ~~Ld~la~~----~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR  158 (165)
                      .++..+.+-    +++..++.++.+|.-+|.+.....|+||+-.+....-+..+....++++.+||.++..+.|..-.||
T Consensus       807 vai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r  886 (1176)
T KOG1248|consen  807 VAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVR  886 (1176)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHH
Confidence            344444443    3346789999999999999999999999999999998888877888999999999999999999888


Q ss_pred             HHHHh
Q psy12576        159 VAALQ  163 (165)
Q Consensus       159 ~aA~~  163 (165)
                      .+..+
T Consensus       887 ~Kvr~  891 (1176)
T KOG1248|consen  887 KKVRL  891 (1176)
T ss_pred             HHHHH
Confidence            87643

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=93.81  E-value=0.51  Score=37.07  Aligned_cols=87  Identities=14%  Similarity=0.064  Sum_probs=64.0

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHH-cCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHh--
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSC-CEED---MVPHILPFVNANIEHADWRHRDAALMSFGAI--  126 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~-~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i--  126 (165)
                      +.++|+.++-|.+.++.      - .-.|.+...-|-.. -+++   ++|.+++-+.+.+++.|.....+++.+|..+  
T Consensus        37 ~~~Lpif~dGL~Et~~P------y-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~  109 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHP------Y-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT  109 (183)
T ss_pred             hhHHHHHHhhhhccCcc------H-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            57899999999965421      1 23344444444444 4455   4566777788999999999999999999999  


Q ss_pred             -hcCCcchhchHhHHHHHHHHH
Q psy12576        127 -LVRPSFIITISERNFIMEVVC  147 (165)
Q Consensus       127 -~EG~~~~~~~~~l~~il~~v~  147 (165)
                       .++.++. +.+|..+++|.+-
T Consensus       110 ~~~~vG~a-LvPyyrqLLp~ln  130 (183)
T PF10274_consen  110 SSDMVGEA-LVPYYRQLLPVLN  130 (183)
T ss_pred             hhhhhhHH-HHHHHHHHHHHHH
Confidence             8888875 5578999999754

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=93.81  E-value=1.6  Score=33.53  Aligned_cols=70  Identities=17%  Similarity=0.044  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .+.+|.++..|.+.       ++..++.|..+|..|...---++=+.++..+-..+.++|+..|..|..+|.-++.-
T Consensus        24 e~~~~~l~~~L~D~-------~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   24 EPYLPNLYKCLRDE-------DPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HhHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            34566677777632       36888888888888866533345566655566788999999999999999988865

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=93.77  E-value=0.3  Score=40.67  Aligned_cols=86  Identities=22%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchh
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFII  134 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~  134 (165)
                      .++.+++.+...       +|..+..|...       ++..=....+|.+.+.+.++++..|..|+.++|.+..-     
T Consensus        44 ~~~~~~~~l~~~-------~~~vr~~aa~~-------l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-----  104 (335)
T COG1413          44 AADELLKLLEDE-------DLLVRLSAAVA-------LGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDP-----  104 (335)
T ss_pred             hHHHHHHHHcCC-------CHHHHHHHHHH-------HhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----
Confidence            445555555422       36666666544       23222345556666777888889999888888876532     


Q ss_pred             chHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576        135 TISERNFIMEVVCEATQ-SPDTQIRVAALQCL  165 (165)
Q Consensus       135 ~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al  165 (165)
                            ..++.+.+.+. |++..||.+|..+|
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL  130 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARAL  130 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHH
Confidence                  22344455555 89999998887664

>KOG0211|consensus

Probab=93.75  E-value=0.35  Score=45.61  Aligned_cols=88  Identities=10%  Similarity=0.097  Sum_probs=70.3

Q ss_pred             CCchhhHHHHHHHHHHHHcCCcc-hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEEDM-VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS  152 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~~i-~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D  152 (165)
                      .|-.++.-.-||..+|..+|..+ -..++|++.....++.+-.|-.+...|--|.-+........+   +.|......+|
T Consensus       570 ~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~---v~pll~~L~~d  646 (759)
T KOG0211|consen  570 NYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEE---VLPLLETLSSD  646 (759)
T ss_pred             ccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHH---HHHHHHHhccC
Confidence            47788888899999999999655 477889999999999999999999999999988776544433   44443334459


Q ss_pred             CCHHHHHHHHhc
Q psy12576        153 PDTQIRVAALQC  164 (165)
Q Consensus       153 ~~p~VR~aA~~a  164 (165)
                      ++.-||+.|..|
T Consensus       647 ~~~dvr~~a~~a  658 (759)
T KOG0211|consen  647 QELDVRYRAILA  658 (759)
T ss_pred             cccchhHHHHHH
Confidence            999999999765

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.54  E-value=0.3  Score=35.33  Aligned_cols=65  Identities=23%  Similarity=0.357  Sum_probs=44.6

Q ss_pred             hhhHHHHHhhhcccCc----hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         97 VPHILPFVNANIEHAD----WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        97 ~~~vl~~i~~~l~~~d----w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .|.++.++.+.++...    -....+++-++++...-.......  -..+++.+++.+++|+-  |.+|++||
T Consensus        80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~--~~~~l~~~~~~l~~~~~--~~~A~~cl  148 (148)
T PF08389_consen   80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELII--NSNLLNLIFQLLQSPEL--REAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHH--SSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhc--cHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence            5556666655554433    677889999999988855443222  24599999999965554  99999986

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG1517|consensus

Probab=93.47  E-value=0.24  Score=48.05  Aligned_cols=86  Identities=13%  Similarity=0.103  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHcC-C--c-chhhHHHHHhhhccc-CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         80 AAGVCLMLLSSCCE-E--D-MVPHILPFVNANIEH-ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        80 ~a~~~Ld~la~~~~-~--~-i~~~vl~~i~~~l~~-~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      .|+-.|..+-..++ .  . +-..++...-+.+.+ ++|-.|...+++||-+=+.-....-.-.+......+...|.||-
T Consensus       576 maAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~v  655 (1387)
T KOG1517|consen  576 MAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPV  655 (1387)
T ss_pred             HHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCcc
Confidence            34445555544444 1  2 335677777777877 48999999999999999877765444457778888999999999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      |.||.||.+||
T Consensus       656 pEVRaAAVFAL  666 (1387)
T KOG1517|consen  656 PEVRAAAVFAL  666 (1387)
T ss_pred             HHHHHHHHHHH
Confidence            99999999986

>TIGR02270 conserved hypothetical protein

Probab=93.12  E-value=0.23  Score=43.63  Aligned_cols=57  Identities=21%  Similarity=0.207  Sum_probs=41.2

Q ss_pred             hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      -+...+.+...+.++++..|.+++-++|.....            -.+.+.+.++|++|.||.+|+.+|
T Consensus       115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------------~~~~L~~~L~d~d~~Vra~A~raL  171 (410)
T TIGR02270       115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD------------PGPALEAALTHEDALVRAAALRAL  171 (410)
T ss_pred             chHHHHHHHHHhcCCChHHHHHHHHHHHhhccC------------hHHHHHHHhcCCCHHHHHHHHHHH
Confidence            344555566677889999999888777773322            234566778899999999998764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=93.04  E-value=0.29  Score=40.81  Aligned_cols=59  Identities=24%  Similarity=0.307  Sum_probs=45.5

Q ss_pred             hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |...+++.+.+.+++...|.+|.-++|.+..+.         ..+.+.+.+.+.|++..||.++..+|
T Consensus       179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l  237 (335)
T COG1413         179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLAL  237 (335)
T ss_pred             hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence            444555666777777888889988888888654         55667788889999999999988764

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=93.00  E-value=0.85  Score=47.36  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-Cc---chh-hHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-ED---MVP-HILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~---i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      ...+|.++.+|...+       ....+.++.+|..++.... +.   ++. -++|-+-+.+.+++-..++.|+.||+.++
T Consensus       650 agaIpPLV~LLss~~-------~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl  722 (2102)
T PLN03200        650 DEIINPCIKLLTNNT-------EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL  722 (2102)
T ss_pred             cCCHHHHHHHHhcCC-------hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            367888889888643       3467888899999886433 22   222 24444556677888899999999999999


Q ss_pred             cCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        128 VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       128 EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......- ---..+++.+.+.+++.++++|..|..+|
T Consensus       723 ~~~e~~~e-i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL  759 (2102)
T PLN03200        723 SDPEVAAE-ALAEDIILPLTRVLREGTLEGKRNAARAL  759 (2102)
T ss_pred             cCchHHHH-HHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence            87754211 11356688899999999999999998764

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.99  E-value=1.6  Score=36.78  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC--C---cchhhHHHHHhhhccc--CchHHH
Q psy12576         44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE--E---DMVPHILPFVNANIEH--ADWRHR  116 (165)
Q Consensus        44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~--~---~i~~~vl~~i~~~l~~--~dw~~R  116 (165)
                      ...++.+....|+..++..+.+...       .-...|..++..++..+|  .   .++..+.|.+.+.+.+  .....|
T Consensus        76 ~~d~v~~~~~tL~~~~~k~lkkg~~-------~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R  148 (309)
T PF05004_consen   76 LPDFVEDRRETLLDALLKSLKKGKS-------EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKAR  148 (309)
T ss_pred             cHHHHHHHHHHHHHHHHHHhccCCH-------HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHH
Confidence            3346666667788888888876441       235678888999999977  2   5777788887777664  346788


Q ss_pred             HHHHHHHHHhhc-CCcchhchHhHHHHHH----HHHhhcC--------CCCHHHHHHHHhc
Q psy12576        117 DAALMSFGAILV-RPSFIITISERNFIME----VVCEATQ--------SPDTQIRVAALQC  164 (165)
Q Consensus       117 ~Aa~~Alg~i~E-G~~~~~~~~~l~~il~----~v~~~l~--------D~~p~VR~aA~~a  164 (165)
                      -+++.|||.+.- |+.+..-...+-..|.    ..+....        .+++.|..||+++
T Consensus       149 ~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  149 AACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            888889998765 4443211111113344    2221111        2247899998875

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=92.88  E-value=0.3  Score=45.93  Aligned_cols=99  Identities=11%  Similarity=0.150  Sum_probs=75.6

Q ss_pred             HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576         52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPS  131 (165)
Q Consensus        52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~  131 (165)
                      ++.|+|-+++.++..|       -...|-=---|..++..-| +..-...+.+.+-++|+|...|-.|+-++|.+-++  
T Consensus        53 mssLf~dViK~~~trd-------~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~--  122 (757)
T COG5096          53 MSSLFPDVIKNVATRD-------VELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK--  122 (757)
T ss_pred             hHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChH--
Confidence            3567777777777322       3444544455666676666 34455678899999999999999999999988642  


Q ss_pred             chhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        132 FIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       132 ~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                           .-++.+++.|.+.+.|+||.||..|..|+
T Consensus       123 -----el~~~~~~~ik~~l~d~~ayVRk~Aalav  151 (757)
T COG5096         123 -----ELLGNIIDPIKKLLTDPHAYVRKTAALAV  151 (757)
T ss_pred             -----HHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence                 35789999999999999999999999875

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=92.83  E-value=0.14  Score=34.35  Aligned_cols=50  Identities=28%  Similarity=0.301  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576        115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ-SPDTQIRVAALQCL  165 (165)
Q Consensus       115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al  165 (165)
                      .++||++|+|.|+-...-...- .-..+++.+++... +|...||-.|+++|
T Consensus         3 ~lKaaLWaighIgss~~G~~lL-~~~~iv~~iv~~a~~s~v~siRGT~fy~L   53 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPLGIQLL-DESDIVEDIVKIAENSPVLSIRGTCFYVL   53 (73)
T ss_pred             HHHHHHHHHHhHhcChHHHHHH-hhcCHHHHHHHHHHhCCccchHHHHHHHH
Confidence            5789999999997543332111 12368888888875 99999999999875

>KOG1240|consensus

Probab=92.73  E-value=0.59  Score=45.96  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=59.1

Q ss_pred             chhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         76 NPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      .+.++=.+.|-.|--.+| .+--..+|+++..+|.+.||+.|-|=+=.+.-++-..+.  + .-=+.++|.+.++|.|++
T Consensus       593 ~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--r-s~seyllPLl~Q~ltD~E  669 (1431)
T KOG1240|consen  593 IVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--R-SVSEYLLPLLQQGLTDGE  669 (1431)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--e-eHHHHHHHHHHHhccCcc
Confidence            444454455555555667 355567788888899999999996654444422222221  1 024678999999999999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      +.|-..|+.||
T Consensus       670 E~Viv~aL~~l  680 (1431)
T KOG1240|consen  670 EAVIVSALGSL  680 (1431)
T ss_pred             hhhHHHHHHHH
Confidence            99999999885

>KOG1992|consensus

Probab=92.68  E-value=1.1  Score=42.65  Aligned_cols=88  Identities=13%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc------cCchHHHHHHHHHHHHhh-------cCCcc-hhchHhHH
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWRHRDAALMSFGAIL-------VRPSF-IITISERN  140 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~------~~dw~~R~Aa~~Alg~i~-------EG~~~-~~~~~~l~  140 (165)
                      -|-+++|..-+--|...+...+.+.+-..++..++      |.||+.++.++.-+-+++       +||.. ..+-.-.+
T Consensus       376 dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~  455 (960)
T KOG1992|consen  376 DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVD  455 (960)
T ss_pred             chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHH
Confidence            36678888888888888887888888888888887      789999999987776665       46654 12222344


Q ss_pred             HHHHHHHhhcC----CCCHHHHHHHH
Q psy12576        141 FIMEVVCEATQ----SPDTQIRVAAL  162 (165)
Q Consensus       141 ~il~~v~~~l~----D~~p~VR~aA~  162 (165)
                      .+...|.+.|.    .++|.+|.+|+
T Consensus       456 Ff~~~ilp~L~s~~vn~~pilka~aI  481 (960)
T KOG1992|consen  456 FFANQILPDLLSPNVNEFPILKADAI  481 (960)
T ss_pred             HHHHHhhHHhccCccccccchhhccc
Confidence            45555555554    57788888774

>KOG2933|consensus

Probab=92.49  E-value=0.3  Score=41.45  Aligned_cols=93  Identities=18%  Similarity=0.183  Sum_probs=69.1

Q ss_pred             cCCCchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576         72 EDDWNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE  148 (165)
Q Consensus        72 ddew~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~  148 (165)
                      +++|...--+...|.+|+..=++.   .+.-+..+|.+.+.+..-..-+||+++++.|..--...+.. +++..+-.++.
T Consensus        99 s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld~lv~~Ll~  177 (334)
T KOG2933|consen   99 SDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELDDLVTQLLH  177 (334)
T ss_pred             hHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence            346987777778888887766643   34456677888888888888899999999999877665544 67777777777


Q ss_pred             hcCCCCHHHHHHHHhcC
Q psy12576        149 ATQSPDTQIRVAALQCL  165 (165)
Q Consensus       149 ~l~D~~p~VR~aA~~al  165 (165)
                      ...+.+--||..|--||
T Consensus       178 ka~~dnrFvreda~kAL  194 (334)
T KOG2933|consen  178 KASQDNRFVREDAEKAL  194 (334)
T ss_pred             hhcccchHHHHHHHHHH
Confidence            77777778887775543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=92.48  E-value=0.37  Score=37.86  Aligned_cols=68  Identities=18%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC-CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         97 VPHILPFVNANIEHADWRHRDAALMSFGAILVR-PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG-~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.+.||..-+.+...+-.||.-|..++--+++- ..++ ..+-+++++..+-++|+..++.|..+++.+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~k-ilPvlPqLI~plk~AL~tr~~~V~~~~L~~L  104 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEK-ILPVLPQLIIPLKRALNTRDPEVFCATLKAL  104 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            567888888899888888999999999988876 4444 4468999999999999999999999999875

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.44  E-value=0.44  Score=36.40  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=56.7

Q ss_pred             cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC-HHHHHHHHhcC
Q psy12576         95 DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD-TQIRVAALQCL  165 (165)
Q Consensus        95 ~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~-p~VR~aA~~al  165 (165)
                      ..+......+.+.++|.++..|.+|+.-++++.+-|+...+..+-...+..+.+.++.++ +.++.+|+.+|
T Consensus        21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L   92 (165)
T PF08167_consen   21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITL   92 (165)
T ss_pred             HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            356777888999999999999999999999999988655565567888888888887444 56677777653

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=92.39  E-value=0.4  Score=37.29  Aligned_cols=60  Identities=12%  Similarity=0.119  Sum_probs=46.1

Q ss_pred             hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576         98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus        98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      |.+.+++.+.+.|++...|++|+.++-...       .....+.++..+...+.|++..||.|..-+
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~-------~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~  178 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYI-------RKEDFDELLEIIEALLKDEEYYVQKAIGWA  178 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHG-------GGCHHHHHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-------HhcCHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            778889999999998777888877653222       224688899988888999999999997544

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG4653|consensus

Probab=92.05  E-value=2.4  Score=40.57  Aligned_cols=158  Identities=13%  Similarity=0.065  Sum_probs=88.1

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHh-hh-cC---CCCCcc--cHH----------HHHHHHhHHHHHHHHHhh
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEA-AD-FG---RPPTRT--SRF----------YAKGALQYLVPILTQKLT   64 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~-~~-~g---~~~~~~--~~~----------~~~~~~~~l~p~ll~~l~   64 (165)
                      +++|.-|-+.||--..++||.+.+-+.+.... +. ..   ++..|-  --.          .+-++...|+...|..+.
T Consensus       778 kdedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr  857 (982)
T KOG4653|consen  778 KDEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR  857 (982)
T ss_pred             cccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC
Confidence            44556677889999999999877766663221 11 11   111111  000          122222333333333333


Q ss_pred             ccCCCCCcCCCch--hhHHHHHHHHHHHHcCCcchhhHHHHH-hhhcccCchHHHHHHHHHHHHhhcCCcchhchHh---
Q psy12576         65 KQEELDDEDDWNP--CKAAGVCLMLLSSCCEEDMVPHILPFV-NANIEHADWRHRDAALMSFGAILVRPSFIITISE---  138 (165)
Q Consensus        65 ~~~ed~dddew~~--~~~a~~~Ld~la~~~~~~i~~~vl~~i-~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~---  138 (165)
                          |+ |.+|-.  ..+.+++..+++--+++ .+-.++.-| .---.+.....|+||+.-+.-...|.+...+.-+   
T Consensus       858 ----ep-d~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~  931 (982)
T KOG4653|consen  858 ----EP-DHEFRASSLANLGQLCQLLAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL  931 (982)
T ss_pred             ----Cc-hHHHHHhHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence                22 335733  33456666666666666 444444333 3333477899999999999999999997544322   


Q ss_pred             HHHHHHHHHhhc-CCCCHHHHHHHHhcC
Q psy12576        139 RNFIMEVVCEAT-QSPDTQIRVAALQCL  165 (165)
Q Consensus       139 l~~il~~v~~~l-~D~~p~VR~aA~~al  165 (165)
                      +-.....+.+.. .+++-.+|..|+-||
T Consensus       932 l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  932 LIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            222233333333 378888999998774

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=92.00  E-value=0.57  Score=32.52  Aligned_cols=56  Identities=13%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             cCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccC--chHHHHHHHHHHHHhh
Q psy12576         72 EDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHA--DWRHRDAALMSFGAIL  127 (165)
Q Consensus        72 ddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~--dw~~R~Aa~~Alg~i~  127 (165)
                      ++.|..+..|+..|..+...++.   .+-|.++....+.+.++  .+..+.+|+++|++++
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG   77 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG   77 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999999999994   46788887777777754  5778999999999993

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.72  E-value=0.32  Score=43.82  Aligned_cols=74  Identities=16%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             HHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576         85 LMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus        85 Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      |-.|++.--..+++.+.|++. .-.......|.+|+.||.-+++-+...    -++.++++..+.  +.++.||.||+..
T Consensus       467 LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~----v~~~l~~i~~n~--~e~~EvRiaA~~~  539 (574)
T smart00638      467 LKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK----VQEVLLPIYLNR--AEPPEVRMAAVLV  539 (574)
T ss_pred             HHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH----HHHHHHHHHcCC--CCChHHHHHHHHH
Confidence            444443322467777777776 223456789999999999888766553    244455554332  5667799999865


Q ss_pred             C
Q psy12576        165 L  165 (165)
Q Consensus       165 l  165 (165)
                      |
T Consensus       540 l  540 (574)
T smart00638      540 L  540 (574)
T ss_pred             H
Confidence            3

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=91.61  E-value=0.42  Score=39.62  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=40.0

Q ss_pred             chHHHHH-HHHHHHHhhc-CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        112 DWRHRDA-ALMSFGAILV-RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       112 dw~~R~A-a~~Alg~i~E-G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .|+...+ +..+|.-+.. -.+......+.+-++|.++..+.|.++.+|.-++.||
T Consensus        88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL  143 (282)
T PF10521_consen   88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLL  143 (282)
T ss_pred             CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHH
Confidence            6887753 2244444433 4444456678999999999999999999999998875

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=91.39  E-value=0.83  Score=32.76  Aligned_cols=59  Identities=19%  Similarity=0.312  Sum_probs=47.1

Q ss_pred             cchhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576         95 DMVPHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT  155 (165)
Q Consensus        95 ~i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p  155 (165)
                      .+++.++|++...+. +...-+|-|++|-+|.++-=..  ...+-++.++..+++.......
T Consensus         2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~   61 (121)
T PF12397_consen    2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETV   61 (121)
T ss_pred             cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchh
Confidence            578999999999999 7788999999999999985332  2334578888888888776655

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>KOG1060|consensus

Probab=90.88  E-value=2.1  Score=40.67  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             HHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576         85 LMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus        85 Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      |-.|+..==.-|.|.+|-.|++...++.++.|+.|..|+-=+=    . ....+-++++.+|-..|.|..|.|-.+|..|
T Consensus       129 LRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLY----s-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~A  203 (968)
T KOG1060|consen  129 LRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLY----S-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMA  203 (968)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHh----c-CChhhHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence            6666655334577888888888888888888887777764221    1 1223445777777777788888888777654

>KOG2025|consensus

Probab=90.71  E-value=2.1  Score=40.30  Aligned_cols=79  Identities=15%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHcC------CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC-CCC
Q psy12576         82 GVCLMLLSSCCE------EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ-SPD  154 (165)
Q Consensus        82 ~~~Ld~la~~~~------~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~-D~~  154 (165)
                      ..|+..|+...+      +.++..+..-+...+.+-.+..|.-|++||.-.=+...+...     .++....-.++ ||+
T Consensus       103 frvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~-----~v~n~l~~liqnDpS  177 (892)
T KOG2025|consen  103 FRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC-----PVVNLLKDLIQNDPS  177 (892)
T ss_pred             HHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCCc
Confidence            455555655555      235566667777788999999999999999988865555322     22333333343 999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      +.||.||+-++
T Consensus       178 ~EVRRaaLsnI  188 (892)
T KOG2025|consen  178 DEVRRAALSNI  188 (892)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>KOG0567|consensus

Probab=90.44  E-value=0.64  Score=38.72  Aligned_cols=64  Identities=19%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             HcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         91 CCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        91 ~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ++|.-.-|..+|.+.+.|.+  +++..|+-|.-|||+|+.           +.-++++.+.+.|+.+.||..+-.+|
T Consensus       210 VfGQl~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~val  275 (289)
T KOG0567|consen  210 VFGQLQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVAL  275 (289)
T ss_pred             HHhhccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            34432335567777777764  679999999999999984           12366777889999999999876553

>KOG2549|consensus

Probab=90.07  E-value=1.5  Score=39.80  Aligned_cols=102  Identities=11%  Similarity=0.114  Sum_probs=72.2

Q ss_pred             HHHHHHhHHHHHHHHHhhccC--CC-CCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccC--chHHHHH
Q psy12576         47 YAKGALQYLVPILTQKLTKQE--EL-DDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHA--DWRHRDA  118 (165)
Q Consensus        47 ~~~~~~~~l~p~ll~~l~~~~--ed-~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~--dw~~R~A  118 (165)
                      |+.+++..|+|-++.++....  .+ ++|+.|..++.|+..|..+-..+++   .+-+.++.++.+-+.++  .|.-.+.
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG  360 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG  360 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence            677788889999999888643  12 3455799999999999988877874   36688888888877765  6889999


Q ss_pred             HHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576        119 ALMSFGAILVRPSFIITISERNFIMEVVCE  148 (165)
Q Consensus       119 a~~Alg~i~EG~~~~~~~~~l~~il~~v~~  148 (165)
                      ++..|..++--.-.....++++.+...+-.
T Consensus       361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~  390 (576)
T KOG2549|consen  361 AIAGLSELGHEVIRTVILPNLKEYNERLQS  390 (576)
T ss_pred             HHHHHHHhhhhhhhheeccchHHHHHHhhh
Confidence            998888776422222233345555444333

>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised

Probab=90.06  E-value=0.41  Score=33.32  Aligned_cols=46  Identities=20%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576        114 RHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus       114 ~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      +.|+||+++||++.....- .....++.+|..+++...||.| ||..+
T Consensus         4 ~~rH~~VLGL~Alv~a~Py-~vP~w~P~~l~~La~~~~~~~~-I~~tv   49 (90)
T PF11919_consen    4 RRRHAAVLGLSALVLAFPY-DVPPWMPEVLEELARHANDPQP-IRTTV   49 (90)
T ss_dssp             HHHHHHHHHHHHHHTT-S---SS-HHHHHHHHHHTTSSS-SS-HHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHhCCCch-HHHHH
Confidence            5799999999999976543 3445899999999999998665 44433

This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=89.79  E-value=0.66  Score=33.24  Aligned_cols=61  Identities=25%  Similarity=0.351  Sum_probs=44.8

Q ss_pred             HHHHhhhcccCc----hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        101 LPFVNANIEHAD----WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       101 l~~i~~~l~~~d----w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      +.++.+.+.+.+    -..|+-++.|+|.+.+.++..+ ...+++|+-.+-.++..|+  .|..|+.|
T Consensus        13 l~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~~e--L~~~al~~   77 (107)
T smart00802       13 LAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEIPE--LRSLALRC   77 (107)
T ss_pred             HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCchh--HHHHHHHH
Confidence            344555555544    3458899999999999777654 3578999988888887554  88888876

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.77  E-value=1.3  Score=30.82  Aligned_cols=63  Identities=13%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             HHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        101 LPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       101 l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.-+-+.++++....|--|+.-|..+.+.-+  .....++.++..+...++|+++-|==+|.++|
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L   67 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGL   67 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence            3445567888999999999999999988776  12235889999999999999998888777654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=89.00  E-value=0.4  Score=27.70  Aligned_cols=26  Identities=19%  Similarity=0.190  Sum_probs=22.6

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        140 NFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       140 ~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ...+|.+++.+.++++.||..|+-||
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al   36 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWAL   36 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            34789999999999999999998764

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=88.87  E-value=1.6  Score=30.97  Aligned_cols=60  Identities=22%  Similarity=0.247  Sum_probs=39.9

Q ss_pred             HHHhhhccc----CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        102 PFVNANIEH----ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       102 ~~i~~~l~~----~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      .++...+.+    .+-..|+-++.++|.+.+=+++. ....+++|+-.+-.++..|  .+|..|+.|
T Consensus        14 ~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~-i~~~~pQI~a~L~sal~~~--~l~~~al~~   77 (107)
T PF08064_consen   14 TRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSH-ISSARPQIMACLQSALEIP--ELREEALSC   77 (107)
T ss_pred             HHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhCCh--hhHHHHHHH
Confidence            444444444    56677788888888888844443 3346777777777777666  677777765

; GO: 0004674 protein serine/threonine kinase activity

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=88.75  E-value=0.73  Score=24.75  Aligned_cols=15  Identities=20%  Similarity=0.149  Sum_probs=13.5

Q ss_pred             hHHHHHHHHHHHHhh
Q psy12576        113 WRHRDAALMSFGAIL  127 (165)
Q Consensus       113 w~~R~Aa~~Alg~i~  127 (165)
                      |..|++|..+||.+.
T Consensus         1 ~~vR~~aa~aLg~~~   15 (30)
T smart00567        1 PLVRHEAAFALGQLG   15 (30)
T ss_pred             CHHHHHHHHHHHHcC
Confidence            788999999999983

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG4500|consensus

Probab=88.46  E-value=0.87  Score=40.62  Aligned_cols=68  Identities=15%  Similarity=0.215  Sum_probs=53.3

Q ss_pred             hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc---chhchHhHHHHHHHHHh-hcCCCCHHHHHHHHhcC
Q psy12576         98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPS---FIITISERNFIMEVVCE-ATQSPDTQIRVAALQCL  165 (165)
Q Consensus        98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~---~~~~~~~l~~il~~v~~-~l~D~~p~VR~aA~~al  165 (165)
                      |.++.|+...+.|.|-...-+|.+|+|..+.-=+   ..+.+..++.++..+-+ .-.|.+-++++|++.||
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL  385 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSAL  385 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence            6699999999999999999999999999985322   22334456667776666 45699999999998775

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=88.30  E-value=1.1  Score=36.87  Aligned_cols=67  Identities=19%  Similarity=0.166  Sum_probs=49.1

Q ss_pred             hhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         98 PHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        98 ~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.-|.-+...++ +.|+..++.++.++|..+-.......-.+ -..++.|.+.+.+|+|.||.-|+.||
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL   78 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNAL   78 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHH
Confidence            334445555665 56899999999999998876654211111 25678889999999999999998875

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=88.19  E-value=3.7  Score=35.84  Aligned_cols=68  Identities=18%  Similarity=0.072  Sum_probs=55.8

Q ss_pred             chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576         96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus        96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~  163 (165)
                      .+...+|.+.+.+++.|...---|++|++.+.+|+.+++..-.=-.+++.+++.|.+|+..|+.-|+.
T Consensus       240 ~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR  307 (526)
T COG5064         240 NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR  307 (526)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence            67778888999999999999999999999999999986543323457778999999998888776654

>KOG0915|consensus

Probab=88.13  E-value=0.69  Score=46.41  Aligned_cols=75  Identities=21%  Similarity=0.270  Sum_probs=61.2

Q ss_pred             HHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         83 VCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        83 ~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      +=|-.||.-+| .+++-.+|...+   .+.-|.-|++|...||+|++-..++ .++++.+++|.+.+.==||++.||.|-
T Consensus       943 KELc~LASdl~qPdLVYKFM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~k-l~p~l~kLIPrLyRY~yDP~~~Vq~aM 1018 (1702)
T KOG0915|consen  943 KELCNLASDLGQPDLVYKFMQLAN---HNATWNSKKGAAFGFGAIAKQAGEK-LEPYLKKLIPRLYRYQYDPDKKVQDAM 1018 (1702)
T ss_pred             HHHHHHHhhcCChHHHHHHHHHhh---hhchhhcccchhhchHHHHHHHHHh-hhhHHHHhhHHHhhhccCCcHHHHHHH
Confidence            44778899999 466666665543   3567999999999999999987774 567999999999988889999999875

>KOG1991|consensus

Probab=88.10  E-value=5.2  Score=38.74  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=73.5

Q ss_pred             HHhHHHHHHHHHhhccCCCCC-cCCCchhhHHHHHHHHHHHHcC-Cc----chhh-HHHHHhhhcccCchHHHHHHHHHH
Q psy12576         51 ALQYLVPILTQKLTKQEELDD-EDDWNPCKAAGVCLMLLSSCCE-ED----MVPH-ILPFVNANIEHADWRHRDAALMSF  123 (165)
Q Consensus        51 ~~~~l~p~ll~~l~~~~ed~d-ddew~~~~~a~~~Ld~la~~~~-~~----i~~~-vl~~i~~~l~~~dw~~R~Aa~~Al  123 (165)
                      .+|++++.++++++.-+++.. .+.--....|...+..|+..+- +.    .+.. +.++|-+.++|+--..|-=|+..+
T Consensus       407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl  486 (1010)
T KOG1991|consen  407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL  486 (1010)
T ss_pred             hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence            678899999999997666532 1111112234444444444443 22    2222 335555567788888888888999


Q ss_pred             HHhh-cCCcchhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576        124 GAIL-VRPSFIITISERNFIMEVVCEATQ-SPDTQIRVAALQCL  165 (165)
Q Consensus       124 g~i~-EG~~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al  165 (165)
                      +..+ +..++   ...+-.++..+.+++. |++.-||.-|..||
T Consensus       487 ~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalAL  527 (1010)
T KOG1991|consen  487 SQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALAL  527 (1010)
T ss_pred             HHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHH
Confidence            9888 33333   3468889999999988 99999998887664

>KOG0414|consensus

Probab=87.64  E-value=1.6  Score=42.90  Aligned_cols=97  Identities=12%  Similarity=0.064  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhh-cCCc
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL-VRPS  131 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~-EG~~  131 (165)
                      ..=+|.++..|.+.+      .-..+..+..+|.-+|-++|+ ++.+--+++-..+.+++...|+.|+|.+.-+. -|.-
T Consensus       959 es~l~llftimeksp------~p~IRsN~VvalgDlav~fpn-lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmi 1031 (1251)
T KOG0414|consen  959 ESHLPLLFTIMEKSP------SPRIRSNLVVALGDLAVRFPN-LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMI 1031 (1251)
T ss_pred             HHHHHHHHHHHhcCC------Cceeeecchheccchhhhccc-ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhh
Confidence            445788888888765      134444555667888888885 88888899999999999999999999999765 2222


Q ss_pred             chhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576        132 FIITISERNFIMEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus       132 ~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~  162 (165)
                      +      ...-++-....+.||++++|.-|-
T Consensus      1032 K------VKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1032 K------VKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred             H------hcccHHHHHHHhcCCcHHHHHHHH
Confidence            1      333455556678899999998774

>KOG1824|consensus

Probab=87.64  E-value=2.3  Score=41.21  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      .+....++.+..+|-|     -.+...|-.|+..+-.++||   .-+|.++|.+-+.++++-  -|-+|+.|+.-|+..+
T Consensus       568 ~m~~~tl~rL~a~d~D-----qeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi--TRl~AvkAlt~Ia~S~  640 (1233)
T KOG1824|consen  568 TMYDCTLQRLKATDSD-----QEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI--TRLTAVKALTLIAMSP  640 (1233)
T ss_pred             HHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh--HHHHHHHHHHHHHhcc
Confidence            3666677777765532     46777888888888888886   357899999999998876  7899999999999987


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~  162 (165)
                      -...+...+..+++.+...+.-.+-..|.+.+
T Consensus       641 l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l  672 (1233)
T KOG1824|consen  641 LDIDLSPVLTEILPELASFLRKNQRALRLATL  672 (1233)
T ss_pred             ceeehhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77555667888888877777655555555543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=87.18  E-value=1.4  Score=34.56  Aligned_cols=56  Identities=18%  Similarity=0.187  Sum_probs=40.9

Q ss_pred             hhHHHHHHHHHHHHcCCcchhhHH-HHH---------------hhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576         78 CKAAGVCLMLLSSCCEEDMVPHIL-PFV---------------NANIEHADWRHRDAALMSFGAILVRPSFI  133 (165)
Q Consensus        78 ~~~a~~~Ld~la~~~~~~i~~~vl-~~i---------------~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~  133 (165)
                      +-+|..||..+++.++.+.+..-+ -|+               .--+.|++.+.|-||+-++.+++||.+.+
T Consensus         3 R~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~   74 (182)
T PF13251_consen    3 RQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPF   74 (182)
T ss_pred             hHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHH
Confidence            567888999999987754332221 122               22467899999999999999999998763

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=87.18  E-value=8.3  Score=36.70  Aligned_cols=89  Identities=21%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhc-cc-------CchHHHHHHHHHHHHhhcCCcch-hchH-hHHHHHH
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI-EH-------ADWRHRDAALMSFGAILVRPSFI-ITIS-ERNFIME  144 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l-~~-------~dw~~R~Aa~~Alg~i~EG~~~~-~~~~-~l~~il~  144 (165)
                      .++.-||..||-.++..=|++.+..+++|+..-+ ++       .+.++.++|+--+++|.....+. ...+ .=..|++
T Consensus       384 ~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~  463 (970)
T COG5656         384 LSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN  463 (970)
T ss_pred             CChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence            4666677777777777777788999999998866 21       45888899999999999855542 1222 2367788


Q ss_pred             HHHhhcCCCCHHHHHHHHh
Q psy12576        145 VVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus       145 ~v~~~l~D~~p~VR~aA~~  163 (165)
                      .|.+.++++---.|.-||+
T Consensus       464 hv~P~f~s~ygfL~Srace  482 (970)
T COG5656         464 HVIPAFRSNYGFLKSRACE  482 (970)
T ss_pred             HhhHhhcCcccchHHHHHH
Confidence            8888899998888877775

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=86.97  E-value=1.3  Score=25.53  Aligned_cols=28  Identities=14%  Similarity=0.194  Sum_probs=22.2

Q ss_pred             HHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576        100 ILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus       100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      ++|.+-+.+.+++...|+.|+.||+.++
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3444455666999999999999999886

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1851|consensus

Probab=86.89  E-value=3.5  Score=41.80  Aligned_cols=88  Identities=20%  Similarity=0.331  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHHHcC-CcchhhHHHHHhh-hcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576         78 CKAAGVCLMLLSSCCE-EDMVPHILPFVNA-NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT  155 (165)
Q Consensus        78 ~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~-~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p  155 (165)
                      .+++..|.+.++.... .++.|.++..+.. ...+..|+.|-|.+--+....---.-...+..++.|-..+.+.+.|.+.
T Consensus      1504 ~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i 1583 (1710)
T KOG1851|consen 1504 KNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQI 1583 (1710)
T ss_pred             HHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHH
Confidence            5788999999999887 5788888887774 4446679999886666655443221112344678888888889999999


Q ss_pred             HHHHHHHhcC
Q psy12576        156 QIRVAALQCL  165 (165)
Q Consensus       156 ~VR~aA~~al  165 (165)
                      .||.-|..||
T Consensus      1584 ~vre~Aa~~L 1593 (1710)
T KOG1851|consen 1584 EVREEAAKCL 1593 (1710)
T ss_pred             HHHHHHHHHH
Confidence            9999887764

>KOG2933|consensus

Probab=86.89  E-value=14  Score=31.55  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhc---ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI---EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ  151 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~  151 (165)
                      ..++++|..|++.|.+.+++.+...+=..+...+   ...+--.|++|--||-++..-..+.       .+++.+...++
T Consensus       143 S~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~  215 (334)
T KOG2933|consen  143 SAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQ  215 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHh
Confidence            3678999999999999999876653333333322   2334557899999999888655542       34666777788


Q ss_pred             CCCHHHHHHHHhc
Q psy12576        152 SPDTQIRVAALQC  164 (165)
Q Consensus       152 D~~p~VR~aA~~a  164 (165)
                      ..+|+||.-|+-|
T Consensus       216 ~~n~r~r~~a~~~  228 (334)
T KOG2933|consen  216 HSNPRVRAKAALC  228 (334)
T ss_pred             hhchhhhhhhhcc
Confidence            9999999888755

>KOG1293|consensus

Probab=86.80  E-value=5.7  Score=36.88  Aligned_cols=90  Identities=8%  Similarity=0.031  Sum_probs=71.3

Q ss_pred             CchhhHHHHHHHHHHHHcCC---c-chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhh
Q psy12576         75 WNPCKAAGVCLMLLSSCCEE---D-MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEA  149 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~---~-i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~  149 (165)
                      -....++..+|..+-.-+++   + +-...+.-+.+++.+.+...|.-++++|.-++-||+.. +.....+.-.+.+...
T Consensus       433 ~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l  512 (678)
T KOG1293|consen  433 IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDL  512 (678)
T ss_pred             hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHH
Confidence            45566667777777777775   2 22346667788999999999999999999999999985 4444667778899999


Q ss_pred             cCCCCHHHHHHHHhc
Q psy12576        150 TQSPDTQIRVAALQC  164 (165)
Q Consensus       150 l~D~~p~VR~aA~~a  164 (165)
                      .+||++-|+..+++-
T Consensus       513 ~nd~d~~Vqeq~fql  527 (678)
T KOG1293|consen  513 INDPDWAVQEQCFQL  527 (678)
T ss_pred             HhCCCHHHHHHHHHH
Confidence            999999999988763

>KOG0392|consensus

Probab=86.77  E-value=1.6  Score=43.36  Aligned_cols=88  Identities=16%  Similarity=0.237  Sum_probs=70.3

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT  155 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p  155 (165)
                      .++.+.+++|..+-.+.....+...+.++.+.+.-++|..|+++++++-.-.- .....+...++.+++.++.++.|.+-
T Consensus       144 pVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~d~l~~~~~~vl~~~i~~L~ds~d  222 (1549)
T KOG0392|consen  144 PVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQDLLFQLLNLVLDFVIEGLEDSDD  222 (1549)
T ss_pred             hhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcch
Confidence            45667778888887777777888888888888888899999999998875554 33333445688999999999999999


Q ss_pred             HHHHHHHhc
Q psy12576        156 QIRVAALQC  164 (165)
Q Consensus       156 ~VR~aA~~a  164 (165)
                      -||..|...
T Consensus       223 dv~~~aa~~  231 (1549)
T KOG0392|consen  223 DVRSVAAQF  231 (1549)
T ss_pred             HHHHHHHHH
Confidence            999888654

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=86.36  E-value=0.66  Score=24.68  Aligned_cols=14  Identities=36%  Similarity=0.252  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHhhc
Q psy12576        115 HRDAALMSFGAILV  128 (165)
Q Consensus       115 ~R~Aa~~Alg~i~E  128 (165)
                      .|++|..+||.+.+
T Consensus         1 VR~~Aa~aLg~igd   14 (27)
T PF03130_consen    1 VRRAAARALGQIGD   14 (27)
T ss_dssp             HHHHHHHHHGGG-S
T ss_pred             CHHHHHHHHHHcCC
Confidence            48999999999987

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=86.08  E-value=0.74  Score=41.74  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=43.1

Q ss_pred             HHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576         85 LMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus        85 Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~  163 (165)
                      |-.|++. | ..+++.+.|++.... ...-..|-+|+.||.-+++-|...    -++.++++..+.-  .++.||-||+.
T Consensus       511 LkaLgN~-g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~----v~~~l~~I~~n~~--e~~EvRiaA~~  582 (618)
T PF01347_consen  511 LKALGNL-GHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEK----VREILLPIFMNTT--EDPEVRIAAYL  582 (618)
T ss_dssp             HHHHHHH-T-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHH----HHHHHHHHHH-TT--S-HHHHHHHHH
T ss_pred             HHHhhcc-CCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHH----HHHHHHHHhcCCC--CChhHHHHHHH
Confidence            4444433 3 456666666664443 446789999999999887766543    2455555544433  35569999986


Q ss_pred             c
Q psy12576        164 C  164 (165)
Q Consensus       164 a  164 (165)
                      .
T Consensus       583 ~  583 (618)
T PF01347_consen  583 I  583 (618)
T ss_dssp             H
T ss_pred             H
Confidence            4

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=86.04  E-value=1.6  Score=35.99  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=46.3

Q ss_pred             HhhhcccCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576        104 VNANIEHADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQSPDTQIRVA  160 (165)
Q Consensus       104 i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~a  160 (165)
                      +.+++.|+|+..|.-|+..|+.+++..... ...+++..++.+.+..+.|.. .|+.+
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~   60 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA   60 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH
Confidence            567899999999999999999999988864 556689999999999996554 35444

>KOG2032|consensus

Probab=85.00  E-value=6.8  Score=35.36  Aligned_cols=78  Identities=6%  Similarity=0.138  Sum_probs=58.4

Q ss_pred             HHHHHHHcCCcchh------hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC-CHHH
Q psy12576         85 LMLLSSCCEEDMVP------HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP-DTQI  157 (165)
Q Consensus        85 Ld~la~~~~~~i~~------~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~-~p~V  157 (165)
                      +.-+|+..+..+++      .++....+...+++-+.|.-|+-.||..++||.++.++ |-..++..|+.+|-|+ +..|
T Consensus       238 ~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t-h~~~~ldaii~gL~D~~~~~V  316 (533)
T KOG2032|consen  238 IAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT-HKTTQLDAIIRGLYDDLNEEV  316 (533)
T ss_pred             HHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH-hHHHHHHHHHHHHhcCCccHH
Confidence            44567777765554      56666677888999999999999999999997776554 7899999999998744 4555


Q ss_pred             HHHHHh
Q psy12576        158 RVAALQ  163 (165)
Q Consensus       158 R~aA~~  163 (165)
                      .--|.-
T Consensus       317 ~leam~  322 (533)
T KOG2032|consen  317 QLEAMK  322 (533)
T ss_pred             HHHHHH
Confidence            544443

>KOG2259|consensus

Probab=84.75  E-value=2.9  Score=39.03  Aligned_cols=90  Identities=18%  Similarity=0.082  Sum_probs=68.6

Q ss_pred             CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC---cc--hhchHhHHHHHHHHHh
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP---SF--IITISERNFIMEVVCE  148 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~---~~--~~~~~~l~~il~~v~~  148 (165)
                      +.+++++|...|-.|+.  |-++-..+-....+.+++.+-..|.||+-.+...+.-|   .+  ....+..+.....||.
T Consensus       211 D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~  288 (823)
T KOG2259|consen  211 DFRVRTHAVEGLLALSE--GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCR  288 (823)
T ss_pred             CcchHHHHHHHHHhhcc--cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHH
Confidence            35778889988877777  54455556677888999999999999987777666544   22  2233457888999999


Q ss_pred             hcCCCCHHHHHHHHhcC
Q psy12576        149 ATQSPDTQIRVAALQCL  165 (165)
Q Consensus       149 ~l~D~~p~VR~aA~~al  165 (165)
                      ++.|-.-.||.-|..+|
T Consensus       289 ~v~D~sl~VRV~AaK~l  305 (823)
T KOG2259|consen  289 AVRDRSLSVRVEAAKAL  305 (823)
T ss_pred             HHhcCceeeeehHHHHh
Confidence            99999999998876543

>KOG1059|consensus

Probab=84.72  E-value=1.4  Score=41.47  Aligned_cols=77  Identities=17%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      +.+|+-||...-..+-.-+-+-|-..+++.-+..|+=|++.+.=+..--.+     -+..-.|.+.+.|.||+|-|..||
T Consensus       127 giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAA  201 (877)
T KOG1059|consen  127 GLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAA  201 (877)
T ss_pred             hheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHH
Confidence            345666665544445555666666788899999999999998877653222     255567888999999999999999


Q ss_pred             Hh
Q psy12576        162 LQ  163 (165)
Q Consensus       162 ~~  163 (165)
                      .+
T Consensus       202 V~  203 (877)
T KOG1059|consen  202 VS  203 (877)
T ss_pred             HH
Confidence            65

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=84.45  E-value=2.6  Score=38.24  Aligned_cols=62  Identities=21%  Similarity=0.241  Sum_probs=37.5

Q ss_pred             chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +++.+...+.+.....+-..+..++.|||+++-.  .     -++.++|.+ .+-.+....||.+|+.||
T Consensus       487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~-----~i~~l~~~i-~~~~~~~~~~R~~Ai~Al  548 (618)
T PF01347_consen  487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--E-----SIPVLLPYI-EGKEEVPHFIRVAAIQAL  548 (618)
T ss_dssp             GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--G-----GHHHHHTTS-TTSS-S-HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--h-----hhHHHHhHh-hhccccchHHHHHHHHHH
Confidence            4455555555555566778899999999999742  1     133333332 222255899999999986

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=84.43  E-value=1.9  Score=32.93  Aligned_cols=58  Identities=10%  Similarity=0.146  Sum_probs=44.1

Q ss_pred             HHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        102 PFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       102 ~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.+...+.|++...|++|+..+..-...      ..+.+.+++.+-..+.|++..||.|...+|
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L  165 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWAL  165 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            7888899888877777777666543321      246888999988888899999999986654

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=84.36  E-value=3  Score=32.41  Aligned_cols=64  Identities=23%  Similarity=0.156  Sum_probs=49.8

Q ss_pred             chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576         96 MVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus        96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      ++...++-|-+...+++...|.+|+-.++.+..+-=.     +=...+|.++-...||++.||..|...
T Consensus         5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-----nP~~cvp~lIAL~ts~~~~ir~~A~~~   68 (187)
T PF12830_consen    5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-----NPKQCVPTLIALETSPNPSIRSRAYQL   68 (187)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-----ChHHHHhHhhhhhCCCChHHHHHHHHH
Confidence            4556677777778899999999999999999973322     122358888888889999999999754

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=84.27  E-value=5.2  Score=33.18  Aligned_cols=65  Identities=18%  Similarity=0.319  Sum_probs=43.2

Q ss_pred             chhhHH-HHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         96 MVPHIL-PFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        96 i~~~vl-~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .+..++ .+|.+.+++.+...|+.|+.++|-.+=--. .....++..++.    .++..++.||..|+++|
T Consensus        23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~----~~~~~~~~v~~~al~~l   88 (298)
T PF12719_consen   23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQ----ALQKDDEEVKITALKAL   88 (298)
T ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHH----HHHhCCHHHHHHHHHHH
Confidence            333444 667789999999999999999995542111 223334444444    44434999999998874

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=83.70  E-value=5.9  Score=29.00  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=18.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        142 IMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       142 il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .=..|.+.+.++++.||+.|+.|+
T Consensus        87 ~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   87 AKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHH
Confidence            345677888999999999999874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1822|consensus

Probab=83.69  E-value=3.2  Score=42.70  Aligned_cols=87  Identities=14%  Similarity=0.099  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHcCCc-chhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH-
Q psy12576         79 KAAGVCLMLLSSCCEED-MVPHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT-  155 (165)
Q Consensus        79 ~~a~~~Ld~la~~~~~~-i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p-  155 (165)
                      =+++.++.++|+.+|+. .+-.+....-.++. ..|+..|-.=.+|+|+|---.+......+++.-+..++-..+|+++ 
T Consensus       894 c~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p  973 (2067)
T KOG1822|consen  894 CAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSP  973 (2067)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCc
Confidence            35888999999999964 34445555545555 4677778888999999998777766667899988888888889987 


Q ss_pred             HHHHHHHhcC
Q psy12576        156 QIRVAALQCL  165 (165)
Q Consensus       156 ~VR~aA~~al  165 (165)
                      .||..++.++
T Consensus       974 ~VqtwSL~al  983 (2067)
T KOG1822|consen  974 VVQTWSLHAL  983 (2067)
T ss_pred             hhhhhHHHHH
Confidence            9999888764

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=82.89  E-value=1.7  Score=36.27  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=43.5

Q ss_pred             hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhch---HhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         99 HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITI---SERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        99 ~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~---~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.-||+. .+.++||..+..|...++.++.........   ..++.++..+.+.++.++..++..|.+||
T Consensus       106 ~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L  174 (312)
T PF03224_consen  106 PYSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCL  174 (312)
T ss_dssp             -HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHH
T ss_pred             hHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Confidence            5667776 888899999999999999999876664333   46777888877777767777777776653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=82.70  E-value=14  Score=30.83  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-------cchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-------DMVPHILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-------~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      .+..++..+...       |+.....|...|..+...-+.       .+++.++.++.+.+++++-.++..++-+|+.++
T Consensus       106 ~~~~fl~ll~~~-------D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL  178 (312)
T PF03224_consen  106 PYSPFLKLLDRN-------DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL  178 (312)
T ss_dssp             -HHHHHHH-S-S-------SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence            455566644432       366667777888888766553       367888888888888888888899999999998


Q ss_pred             cCCcchhchHhHHHHHHHHHhhc-------CCCCHHHHHHHHhcC
Q psy12576        128 VRPSFIITISERNFIMEVVCEAT-------QSPDTQIRVAALQCL  165 (165)
Q Consensus       128 EG~~~~~~~~~l~~il~~v~~~l-------~D~~p~VR~aA~~al  165 (165)
                      .-..-.... .-...++.+.+.+       ...++.+.|.++.|+
T Consensus       179 ~~~~~R~~f-~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l  222 (312)
T PF03224_consen  179 RSKEYRQVF-WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL  222 (312)
T ss_dssp             TSHHHHHHH-HTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred             CcchhHHHH-HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence            432211100 0144444444444       366688888888874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=82.15  E-value=15  Score=25.82  Aligned_cols=80  Identities=10%  Similarity=-0.009  Sum_probs=53.8

Q ss_pred             HHHHHHHcC--CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchH-hHHHHHHHHHh----h--cCCCCH
Q psy12576         85 LMLLSSCCE--EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITIS-ERNFIMEVVCE----A--TQSPDT  155 (165)
Q Consensus        85 Ld~la~~~~--~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~-~l~~il~~v~~----~--l~D~~p  155 (165)
                      +..++....  ..-...++.++.+.+.+.+|+...=|+..+=+++.-|++.+... -...++..+++    .  -.+.++
T Consensus        21 i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~  100 (115)
T cd00197          21 IMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVST  100 (115)
T ss_pred             HHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCCh
Confidence            344444433  24567799999999999999999999999999998888632211 11223333332    1  237799


Q ss_pred             HHHHHHHhc
Q psy12576        156 QIRVAALQC  164 (165)
Q Consensus       156 ~VR~aA~~a  164 (165)
                      .||.-+.+.
T Consensus       101 ~Vr~k~~~l  109 (115)
T cd00197         101 NVREKAIEL  109 (115)
T ss_pred             HHHHHHHHH
Confidence            999988764

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=81.93  E-value=2.3  Score=23.71  Aligned_cols=28  Identities=11%  Similarity=0.181  Sum_probs=22.3

Q ss_pred             chhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         96 MVPHILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        96 i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      .+|++++++.    ++++..++.++.+|+.|+
T Consensus        13 ~i~~L~~ll~----~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       13 GLPALVELLK----SEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CHHHHHHHHc----CCCHHHHHHHHHHHHHHc
Confidence            5666666544    788999999999999886

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PHA02836 putative transmembrane protein; Provisional

Probab=81.76  E-value=1.1  Score=33.53  Aligned_cols=67  Identities=9%  Similarity=0.002  Sum_probs=45.9

Q ss_pred             HHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576         86 MLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP  153 (165)
Q Consensus        86 d~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~  153 (165)
                      +.|...++ +--...+..|+..+...+ ...--.-+=-||.++|.|+.....++++.|||.+.+.+.|.
T Consensus        74 ~lL~~dL~~~g~~~Rl~kfi~sn~n~s-y~~~LtLiG~~gyise~wGk~k~~kYI~~im~l~fnfl~dn  141 (153)
T PHA02836         74 NLLTSNLSKKGFISRFKKYLYSNYDVS-YVSALTLIGIIGYISECCGKYGLEKYIQDLLLLLFNFLDDN  141 (153)
T ss_pred             hhhhcccCcccHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHcccc
Confidence            56666666 345666777777654321 01112233357899999999877789999999999999875

>KOG4224|consensus

Probab=81.29  E-value=2  Score=37.66  Aligned_cols=88  Identities=13%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHHHcCC-cch--hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc-hhchHhHHHHHHHHHhhcCCC
Q psy12576         78 CKAAGVCLMLLSSCCEE-DMV--PHILPFVNANIEHADWRHRDAALMSFGAILVRPSF-IITISERNFIMEVVCEATQSP  153 (165)
Q Consensus        78 ~~~a~~~Ld~la~~~~~-~i~--~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~-~~~~~~l~~il~~v~~~l~D~  153 (165)
                      ++.+..+|-.|.....+ +++  ---+||+.+.+.+.|.-.|+=+..|+|.|+-.-.. +++..-=+.++|.++..+.|+
T Consensus       184 qrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~  263 (550)
T KOG4224|consen  184 QRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG  263 (550)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC
Confidence            44555566666655553 222  23678888899999999999999999999854332 334333467899999999999


Q ss_pred             CHHHHHHHHhcC
Q psy12576        154 DTQIRVAALQCL  165 (165)
Q Consensus       154 ~p~VR~aA~~al  165 (165)
                      +++|+--|-.||
T Consensus       264 s~kvkcqA~lAL  275 (550)
T KOG4224|consen  264 SDKVKCQAGLAL  275 (550)
T ss_pred             ChHHHHHHHHHH
Confidence            999998887654

>KOG2022|consensus

Probab=81.15  E-value=54  Score=31.86  Aligned_cols=130  Identities=16%  Similarity=0.211  Sum_probs=85.8

Q ss_pred             hhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHH-HHHHHHhHHHHHHHHHhhccCCC-------CCcCCCc
Q psy12576          5 IDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRF-YAKGALQYLVPILTQKLTKQEEL-------DDEDDWN   76 (165)
Q Consensus         5 ~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~p~ll~~l~~~~ed-------~dddew~   76 (165)
                      +|.+.-...+||-++-++-......-          .+.++. |.++.+.+|+.+++..+.-..+.       |+-+..+
T Consensus       369 eE~~S~~~l~FW~tL~dei~~~~~e~----------~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~  438 (982)
T KOG2022|consen  369 EEIVSDRTLIFWYTLQDEIMQTINET----------QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFE  438 (982)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHH
Confidence            46677889999999998754433221          122233 55577778888888888743211       1111222


Q ss_pred             h-hhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCc-----hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHH
Q psy12576         77 P-CKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD-----WRHRDAALMSFGAILVRPSFIITISERNFIMEV  145 (165)
Q Consensus        77 ~-~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~d-----w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~  145 (165)
                      . ++.-.-.+.+.=..+|+.++..+..-+.+.+.+.+     |..-+|-+..|-+++|-.+.. .+.-++..++.
T Consensus       439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t-~~~~i~rl~~~  512 (982)
T KOG2022|consen  439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET-ESTWIPRLFET  512 (982)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc-hhHHHHHHHHh
Confidence            2 33444455666667888899999999999998877     999999999999999977763 22345555554

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=80.47  E-value=3.7  Score=24.24  Aligned_cols=38  Identities=11%  Similarity=-0.018  Sum_probs=28.1

Q ss_pred             HHHHHHHHcCCc-chhhHHHHHhhhcccCchHHHHHHHH
Q psy12576         84 CLMLLSSCCEED-MVPHILPFVNANIEHADWRHRDAALM  121 (165)
Q Consensus        84 ~Ld~la~~~~~~-i~~~vl~~i~~~l~~~dw~~R~Aa~~  121 (165)
                      ||..+...-|.- -.+.+...+...+.++++..|+||+=
T Consensus         2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen    2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHH
Confidence            455555555531 23688899999999999999999974

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=80.28  E-value=25  Score=28.96  Aligned_cols=111  Identities=10%  Similarity=-0.022  Sum_probs=66.6

Q ss_pred             HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcc---------hhhHHHHHhhhcc--------
Q psy12576         47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDM---------VPHILPFVNANIE--------  109 (165)
Q Consensus        47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i---------~~~vl~~i~~~l~--------  109 (165)
                      .+.+.|+-++|.+|.++-+-       +-....-|..||..+-..++...         ...+.+-+.+.+.        
T Consensus       112 ~i~~~~~liiP~iL~llDD~-------~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~  184 (282)
T PF10521_consen  112 WISQHWPLIIPPILNLLDDY-------SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPE  184 (282)
T ss_pred             hHHHhhhHHHhhHHHHhcCC-------CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCc
Confidence            46678899999999887521       12345568888999988777433         3334445555555        


Q ss_pred             cCchHHHHHHHHHHHHhh---cCCcchhchHhHHHHHHH-HHhhcC----CCCHHHHHHHHhc
Q psy12576        110 HADWRHRDAALMSFGAIL---VRPSFIITISERNFIMEV-VCEATQ----SPDTQIRVAALQC  164 (165)
Q Consensus       110 ~~dw~~R~Aa~~Alg~i~---EG~~~~~~~~~l~~il~~-v~~~l~----D~~p~VR~aA~~a  164 (165)
                      ++....=.+|+-|+-.++   +......+...+..++.- |+..+.    -+++++|.+.++.
T Consensus       185 ~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~  247 (282)
T PF10521_consen  185 DESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQ  247 (282)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHH
Confidence            445555566666666663   233332333445555543 666653    3468888877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	165
1ukl_A	876	Crystal Structure Of Importin-Beta And Srebp-2 Comp		5e-56
1ukl_A	876	Crystal Structure Of Importin-Beta And Srebp-2 Comp		4e-07
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		2e-55
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		4e-07
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		2e-55
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		4e-07
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		3e-55
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		4e-07
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		4e-55
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		5e-07
1f59_A	442	Importin-Beta-Fxfg Nucleoporin Complex Length = 442		4e-55
1f59_A	442	Importin-Beta-Fxfg Nucleoporin Complex Length = 442		5e-07
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		4e-55
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		5e-07
1gcj_A	460	N-Terminal Fragment Of Importin-Beta Length = 460		2e-53
1gcj_A	460	N-Terminal Fragment Of Importin-Beta Length = 460		3e-06
3nd2_A	861	Structure Of Yeast Importin-Beta (Kap95p) Length =		9e-22
3nd2_A	861	Structure Of Yeast Importin-Beta (Kap95p) Length =		2e-04
2bpt_A	861	Structure Of The Nup1p:kap95p Complex Length = 861		9e-22
2bpt_A	861	Structure Of The Nup1p:kap95p Complex Length = 861		2e-04
2qmr_A	890	Karyopherin Beta2TRANSPORTIN Length = 890		2e-05
1qbk_B	890	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-05
2h4m_A	865	Karyopherin Beta2TRANSPORTIN-M9nls Length = 865		2e-04
2ot8_A	852	Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len		2e-04

>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876

Iteration: 1
 Score =  213 bits (541), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 118/130 (90%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLLS+CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
           M+FG+IL  P
Sbjct: 388 MAFGSILEGP 397

>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score =  210 bits (535), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
           M+FG IL  P
Sbjct: 388 MAFGCILEGP 397

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score =  210 bits (535), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 143 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 202
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 203 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 262
Query: 121 MSFGAILVRP 130
           M+FG IL  P
Sbjct: 263 MAFGCILEGP 272

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 88  SERHFIMQVVCEATQCPDTRVRVAALQNL 116

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score =  210 bits (535), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
           M+FG IL  P
Sbjct: 388 MAFGCILEGP 397

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score =  210 bits (534), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
           M+FG IL  P
Sbjct: 388 MAFGCILEGP 397

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241

>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442

Iteration: 1
 Score =  210 bits (534), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
           M+FG IL  P
Sbjct: 388 MAFGCILEGP 397

>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score =  210 bits (534), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/130 (76%), Positives = 117/130 (90%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387
Query: 121 MSFGAILVRP 130
           M+FG IL  P
Sbjct: 388 MAFGCILEGP 397

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FIM+VVCEATQ PDT++RVAALQ L
Sbjct: 213 SERHFIMQVVCEATQCPDTRVRVAALQNL 241

>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460

Iteration: 1
 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 114/129 (88%)
Query: 2   KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQ 61
           KSDIDEVALQGIEFWSNV DEE DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILTQ
Sbjct: 275 KSDIDEVALQGIEFWSNVCDEEXDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 334
Query: 62  KLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALM 121
            LTKQ+E DD+DDWNPCKAAGVCL LLS+CCE+D+VPH+LPF+  +I++ DWR+RDAA+ 
Sbjct: 335 TLTKQDENDDDDDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVX 394
Query: 122 SFGAILVRP 130
           +FG+IL  P
Sbjct: 395 AFGSILEGP 403

>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
           SER+FI +VVCEATQ PDT++RVAALQ L
Sbjct: 219 SERHFIXQVVCEATQCPDTRVRVAALQNL 247

>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861

Iteration: 1
 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS  D+VA   +EFWS + +EE+D+A E    A F + P ++  F A  +++ +VP L 
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYE---LAQFPQSPLQSYNF-ALSSIKDVVPNLL 330
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             LT+Q E  ++DDWN   +AG CL L +  C   ++  +L FV  NI   +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390
Query: 121 MSFGAILVRP 130
           M+FG+I+  P
Sbjct: 391 MAFGSIMDGP 400

>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
            ERN++M+VVCEATQ+ D +++ AA  CL
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCL 248

>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861

Iteration: 1
 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS  D+VA   +EFWS + +EE+D+A E    A F + P ++  F A  +++ +VP L 
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYE---LAQFPQSPLQSYNF-ALSSIKDVVPNLL 330
Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             LT+Q E  ++DDWN   +AG CL L +  C   ++  +L FV  NI   +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390
Query: 121 MSFGAILVRP 130
           M+FG+I+  P
Sbjct: 391 MAFGSIMDGP 400

>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 137 SERNFIMEVVCEATQSPDTQIRVAALQCL 165
            ERN++M+VVCEATQ+ D +++ AA  CL
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCL 248

>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3   SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
           SDID + L+G        D E D  I DSE     RP    SR  A+   +  +      
Sbjct: 311 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 63  LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
             + ++ D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ ++ 
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 420
Query: 123 FGAI 126
            GAI
Sbjct: 421 LGAI 424

>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3   SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQK 62
           SDID + L+G        D E D  I DSE     RP    SR  A+   +  +      
Sbjct: 311 SDIDIILLKG--------DVEEDETIPDSEQDI--RPRFHRSRTVAQQHDEDGIEEEDDD 360
Query: 63  LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMS 122
             + ++ D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ ++ 
Sbjct: 361 DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV 420
Query: 123 FGAI 126
            GAI
Sbjct: 421 LGAI 424

>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 70  DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAI 126
           D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ ++  GAI
Sbjct: 343 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 399

>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 70  DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAI 126
           D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ ++  GAI
Sbjct: 330 DTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAI 386

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	165
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	3e-41
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-39
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-31
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	5e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	8e-23
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-04
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-04
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	5e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-05
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-04
2x1g_F	971	Cadmus; transport protein, developmental protein,	4e-05
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	5e-05
2x19_B	963	Importin-13; nuclear transport, protein transport;	6e-05

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score =  142 bits (359), Expect = 3e-41
 Identities = 105/165 (63%), Positives = 126/165 (76%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           M+FG IL  P            M  + E  + P   +R  A   +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score =  139 bits (351), Expect = 4e-39
 Identities = 105/165 (63%), Positives = 126/165 (76%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           M+FG IL  P            M  + E  + P   +R  A   +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 432

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score =  118 bits (296), Expect = 1e-31
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS  D+VA   +EFWS + +EE+D+A E ++           S  +A  +++ +VP L 
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQF----PQSPLQSYNFALSSIKDVVPNLL 330

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             LT+Q E  ++DDWN   +AG CL L +  C   ++  +L FV  NI   +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390

Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           M+FG+I+  P  +      +  +  +         Q++     C+
Sbjct: 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCI 435

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 15/109 (13%)

Query: 69  LDDEDDWNPCKAAGVCLMLLSSCCE------EDMVPHILP-----FVNANIEHADWRHRD 117
              E   N  +A+   L+ L   CE      + +V             A         R 
Sbjct: 143 TGAEQPENVKRAS---LLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199

Query: 118 AALMSFGAIL-VRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           AAL +    L    + +    ERN++M+VVCEATQ+ D +++ AA  CL
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL 248

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 92.9 bits (230), Expect = 8e-23
 Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 5/165 (3%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
            +   + VAL+  EFW  ++++ +   +                    K +   ++ +  
Sbjct: 265 TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL----IPVLVNGMKYSDIDIILLKG 320

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
                    D   DWN  K +   L +L++   ++++PHILP +   + H +W  +++ +
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGI 380

Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           +  GAI       +       ++  + +        +R      L
Sbjct: 381 LVLGAIAEGCMQGMI-PYLPELIPHLIQCLSDKKALVRSITCWTL 424

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 22/122 (18%)

Query: 55  LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-----------DMVPHILPF 103
           L+P L   L       D +D+N C+ A      L   CE+             +  ++P 
Sbjct: 129 LLPKLCSLL-------DSEDYNTCEGA---FGALQKICEDSAEILDSDVLDRPLNIMIPK 178

Query: 104 VNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ 163
                +H+  + R  A+      ++  +  + +   +FI  +   A    + ++R    +
Sbjct: 179 FLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDE-EPEVRKNVCR 237

Query: 164 CL 165
            L
Sbjct: 238 AL 239

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 72  EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAIL--VR 129
           +         G+ +  ++S  E    P +LP + + ++  D+   + A  +   I     
Sbjct: 101 DSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 160

Query: 130 PSFIITISER--NFIMEVVCEATQSPDTQIRVAALQCL 165
                 + +R  N ++    +  +    +IR  A+ C+
Sbjct: 161 EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACV 198

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 15/114 (13%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 66  QEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH------ADWRHRDAA 119
           + +L+  D     +A    L  L    E  +    L  +   ++        +W+ +D  
Sbjct: 366 RRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLY 425

Query: 120 LMSFGAILVRPSFIITISERN---------FIMEVVCEATQSPDTQIRVAALQC 164
           +  F A+ +  +                  F  E+  + T +    I +     
Sbjct: 426 IYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI 479

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 52  LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA 111
              ++P+            DE D     A   C+ +     +ED+   ++P +    E  
Sbjct: 201 KSEIIPMF------SNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDK 254

Query: 112 DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
            WR R      F  +       IT ++   ++       +  + ++R AA   +
Sbjct: 255 SWRVRYMVADKFTELQKAVGPEITKTD---LVPAFQNLMKDCEAEVRAAASHKV 305

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 40  PTRTSRFYAKGALQYLVPILTQKLTKQ-----EELDDEDDWNPCKAAGVCLMLLSSCCE- 93
              TSR  A G      P ++  +  +       L  +D     +AA   L   +   E 
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197

Query: 94  EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP 153
           +++   I+P  +          R  A+ +   I      +        +M  + +A +  
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA---QLLPQEDLEALVMPTLRQAAEDK 254

Query: 154 DTQIRVAALQCL 165
             ++R       
Sbjct: 255 SWRVRYMVADKF 266

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 9/113 (7%)

Query: 53  QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHAD 112
           + L  +          L D        A      L+    +E     I+P V A     +
Sbjct: 440 EKLNSLC------MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493

Query: 113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           + HR   L     +       IT      ++  V      P   +R    + L
Sbjct: 494 YLHRMTTLFCINVLSEVCGQDIT---TKHMLPTVLRMAGDPVANVRFNVAKSL 543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971

 Score = 41.9 bits (97), Expect = 4e-05
 Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 22/173 (12%)

Query: 6   DEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK 65
           +  +   + FW  + DE   ++ ++ +              Y K    +L  IL +K  +
Sbjct: 367 ESCSTMALAFWYMLQDEVFAMSNDEQKHK---------CWEYIKPLYAHLTRILVRKSEQ 417

Query: 66  QEEL--------DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI-----EHAD 112
            +E         D E      +      M       + ++  +   ++  I         
Sbjct: 418 PDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTH 477

Query: 113 WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           W   +A + SF ++               +  +     +  + ++   AL+ +
Sbjct: 478 WTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETM 530

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Length = 997

 Score = 41.7 bits (97), Expect = 5e-05
 Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 1/123 (0%)

Query: 44  SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPF 103
                   + YLV  +   L    +  D           +   L      ++ V  I+ +
Sbjct: 746 RGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDY 805

Query: 104 VNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE-ATQSPDTQIRVAAL 162
           V ++            L      L      +T  E+N I+E V          ++RV A 
Sbjct: 806 VCSSNVALSSNQTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAA 865

Query: 163 QCL 165
             L
Sbjct: 866 SIL 868

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 20/174 (11%), Positives = 52/174 (29%), Gaps = 28/174 (16%)

Query: 6   DEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK 65
           +  +   + FW  + D+ +    E               +   +     LV +L  K   
Sbjct: 354 ETTSSLTLTFWYTLQDDILSFEAEKQAVY----------QQVYRPVYFQLVDVLLHKAQF 403

Query: 66  --QEELDDEDD----------WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADW 113
              EE                 +          +L +    ++   +   + ++ E   W
Sbjct: 404 PSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSW 463

Query: 114 RHRDAALMSFGAILVRPSFIITISERNFIMEVV--CEATQSPDTQIRVAALQCL 165
           +H +A L  F +I    +  I ++  + +  ++         + Q+    +  +
Sbjct: 464 QHTEALLYGFQSI----AETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTI 513

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	165
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.93
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.89
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.87
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.86
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.71
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.7
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.62
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.58
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.53
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.31
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.2
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.14
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.03
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.01
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.85
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.84
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.76
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.64
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.58
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.57
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.57
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.55
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.55
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.5
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.5
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.48
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.47
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.47
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.46
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.43
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.39
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.39
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.37
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.34
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	98.33
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.32
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.31
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.31
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	98.3
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.26
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	98.22
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	98.2
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	98.18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.17
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.12
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	97.91
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.86
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.82
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.77
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.76
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.57
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.57
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.5
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.45
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.44
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	97.38
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	97.33
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	97.27
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.27
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.25
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.23
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	97.21
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.13
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.13
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	97.11
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.1
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.07
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.07
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	97.06
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.06
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.99
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	96.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	96.78
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	96.75
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	96.68
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	96.6
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	96.48
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	96.46
3nmz_A	458	APC variant protein; protein-protein complex, arma	96.42
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.34
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.31
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	96.23
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.22
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	96.22
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.18
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.17
3nmz_A	458	APC variant protein; protein-protein complex, arma	95.95
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	95.52
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	95.47
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	94.83
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	94.55
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.43
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.15
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	94.01
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	93.8
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.39
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	93.3
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	93.06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	92.91
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	92.64
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	92.34
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.86
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	91.21
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	90.55
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	88.27
1t06_A	235	Hypothetical protein; structural genomics, PSI, pr	87.59
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	87.2
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	82.39

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.93  E-value=1.6e-25  Score=188.02  Aligned_cols=163  Identities=63%  Similarity=1.030  Sum_probs=135.0

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHH
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAG   82 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~   82 (165)
                      +.+++++.+|+|||.++++.+.++.....+....+.++.+....+++++++.++|.+++.|.+.++|++||+|+++++|.
T Consensus       270 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~  349 (462)
T 1ibr_B          270 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  349 (462)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHH
Confidence            46788999999999999987644322211111112222234445778888999999999999887777778899999999


Q ss_pred             HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576         83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus        83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~  162 (165)
                      .+|+.++..+|+.++|.++|++.+.+++++|+.|+||+++||++++|+.......+++.++|.+++.++|++|+||.+|+
T Consensus       350 ~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~  429 (462)
T 1ibr_B          350 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA  429 (462)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999985445568899999999999999999999999


Q ss_pred             hcC
Q psy12576        163 QCL  165 (165)
Q Consensus       163 ~al  165 (165)
                      .+|
T Consensus       430 ~~l  432 (462)
T 1ibr_B          430 WTV  432 (462)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.89  E-value=2.4e-22  Score=181.14  Aligned_cols=164  Identities=63%  Similarity=1.030  Sum_probs=138.4

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      +++++.++.+|+|||.++++.+.++........+.+..|.+....+.++.++.++|.+++.|.+.++|+|+++|+.+++|
T Consensus       269 ~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a  348 (876)
T 1qgr_A          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHH
Confidence            35678899999999999998876544333333334444545555677777889999999999987777667789999999


Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      ..+|..++..+|+.+++.++|++.+.+.+++|+.|++|+.+||.+++|+.+.....+++.++|.+++.++|++++||.+|
T Consensus       349 ~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a  428 (876)
T 1qgr_A          349 GVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA  428 (876)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999988999999999999999999999999999999999998444456899999999999999999999999


Q ss_pred             HhcC
Q psy12576        162 LQCL  165 (165)
Q Consensus       162 ~~al  165 (165)
                      +.+|
T Consensus       429 ~~~l  432 (876)
T 1qgr_A          429 AWTV  432 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.87  E-value=2.8e-21  Score=173.81  Aligned_cols=160  Identities=33%  Similarity=0.598  Sum_probs=133.2

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      ++.++.++.+|++||.++++..........+   .|..|.+ +++++++.++.++|.+++.|.+.++|+|||+|+++++|
T Consensus       276 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a  351 (861)
T 2bpt_A          276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQ---FPQSPLQ-SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTTCSCC-CCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhh---ccCCchh-hHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHH
Confidence            4567889999999999999876443322111   1333333 44567778889999999999988777677789999999


Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      ..+|+.++..+|+.+++.+++++.+.+++++|+.|++|+.+||++++|+.......+++.+++.+++.+.|+++.||.+|
T Consensus       352 ~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a  431 (861)
T 2bpt_A          352 GACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT  431 (861)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997444567899999999999999999999999


Q ss_pred             HhcC
Q psy12576        162 LQCL  165 (165)
Q Consensus       162 ~~al  165 (165)
                      +.+|
T Consensus       432 ~~~l  435 (861)
T 2bpt_A          432 AWCI  435 (861)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.86  E-value=1.9e-21  Score=177.38  Aligned_cols=144  Identities=19%  Similarity=0.372  Sum_probs=122.0

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhc---------cC--CCC
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTK---------QE--ELD   70 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~---------~~--ed~   70 (165)
                      +++++.++.+|+|||.++|+..                   .++++++++++.++|.+++.|..         .|  ||+
T Consensus       266 ~~~~~~vr~~a~e~l~~l~~~~-------------------~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~  326 (852)
T 4fdd_A          266 QDQDENVALEACEFWLTLAEQP-------------------ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS  326 (852)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTST-------------------THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred             cCCcHHHHHHHHHHHHHHhcch-------------------hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence            4677889999999999999742                   12346677788899999999942         22  332


Q ss_pred             Cc----CCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHH
Q psy12576         71 DE----DDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVV  146 (165)
Q Consensus        71 dd----dew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v  146 (165)
                      +|    ++|+++++|+.+|+.++..+|+.++|.++|++.+.+++++|+.|++|+++||+|++|+.+.+. .+++.++|.+
T Consensus       327 ~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~l~~l  405 (852)
T 4fdd_A          327 GGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI-PYLPELIPHL  405 (852)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG-GGHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHH
Confidence            22    469999999999999999999999999999999999999999999999999999999997544 6899999999


Q ss_pred             HhhcCCCCHHHHHHHHhcC
Q psy12576        147 CEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       147 ~~~l~D~~p~VR~aA~~al  165 (165)
                      ++.++|++++||.+|+.+|
T Consensus       406 ~~~l~d~~~~Vr~~a~~~l  424 (852)
T 4fdd_A          406 IQCLSDKKALVRSITCWTL  424 (852)
T ss_dssp             HHHTTCSSHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHH
Confidence            9999999999999998764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.71  E-value=5.3e-17  Score=149.85  Aligned_cols=151  Identities=14%  Similarity=0.210  Sum_probs=111.9

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCC-------
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDW-------   75 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew-------   75 (165)
                      ..+++++..+++||.++++...+...+       +.  ........++.++.|++.++..|.. ++|+|.++|       
T Consensus       364 ~~~~~v~~~~l~fw~~l~~~~~~~~~~-------~~--~~~~~~~~~~~~~~ll~~l~~~~~~-p~~~~~~~~d~~e~~~  433 (971)
T 2x1g_F          364 PVEESCSTMALAFWYMLQDEVFAMSND-------EQ--KHKCWEYIKPLYAHLTRILVRKSEQ-PDEKSLAKWSSDDLEC  433 (971)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHTSC-CCTTTTSCSCHHHHHH
T ss_pred             CcchhhhHHHHHHHHHHHHHHHhcccc-------cc--hHHHHHHHHHHHHHHHHHHHHHhcC-CCcccccccCHhHHHH
Confidence            357889999999999999854332110       00  0123346777888999999999964 333222233       


Q ss_pred             --chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc-----CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHh
Q psy12576         76 --NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH-----ADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCE  148 (165)
Q Consensus        76 --~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~-----~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~  148 (165)
                        +.+++++.+|..++..+|+.+++.+++++.+++++     ++|+.|+||+++||+|+|||.+... ..++.+++ ++.
T Consensus       434 f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~-~l~  511 (971)
T 2x1g_F          434 FRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMR-VLA  511 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHH-HHH
Confidence              45688999999999999999999999999999876     7999999999999999999998543 57899999 555


Q ss_pred             hcC--CCCHHHHHHHHhcC
Q psy12576        149 ATQ--SPDTQIRVAALQCL  165 (165)
Q Consensus       149 ~l~--D~~p~VR~aA~~al  165 (165)
                      .+.  |++|+||.+|+.+|
T Consensus       512 ~l~~~d~~~~vr~~a~~~l  530 (971)
T 2x1g_F          512 EIPYEKLNVKLLGTALETM  530 (971)
T ss_dssp             HSCTTTSCHHHHHHHHHHH
T ss_pred             hcCccccCHHHHHHHHHHH
Confidence            555  78999999998764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.70  E-value=2.7e-17  Score=152.43  Aligned_cols=143  Identities=16%  Similarity=0.195  Sum_probs=102.7

Q ss_pred             chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHH--HHHhHHH-HHHHHHhhccCCC------C----
Q psy12576          4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAK--GALQYLV-PILTQKLTKQEEL------D----   70 (165)
Q Consensus         4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~l~-p~ll~~l~~~~ed------~----   70 (165)
                      .++.++.+|+|||.++++.+...                   .+++  +.++.|+ ++++..|+..++|      |    
T Consensus       304 ~~~~~~~~al~fl~~~~~~~~~~-------------------~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~  364 (960)
T 1wa5_C          304 KYDILVSKSLSFLTAVTRIPKYF-------------------EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY  364 (960)
T ss_dssp             TSHHHHHHHHHHHHHHHTSHHHH-------------------GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCcHhHH-------------------HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence            56789999999999999753210                   1111  3445677 6777777642221      1    


Q ss_pred             ------CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc------cCchHHHHHHHHHHHHhhcC---Ccchhc
Q psy12576         71 ------DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWRHRDAALMSFGAILVR---PSFIIT  135 (165)
Q Consensus        71 ------dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~------~~dw~~R~Aa~~Alg~i~EG---~~~~~~  135 (165)
                            ++|.|+++++|+.+|+.++..+|+.++|++++++.++++      +++|+.|+||+++||+|++|   |.....
T Consensus       365 i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~  444 (960)
T 1wa5_C          365 IRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVS  444 (960)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCC
T ss_pred             HHhccCcccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcc
Confidence                  234579999999999999999998899999999999998      78999999999999999986   332111


Q ss_pred             h--H--hHHHH-HHHHHhhcCCC---CHHHHHHHHhcC
Q psy12576        136 I--S--ERNFI-MEVVCEATQSP---DTQIRVAALQCL  165 (165)
Q Consensus       136 ~--~--~l~~i-l~~v~~~l~D~---~p~VR~aA~~al  165 (165)
                      .  .  .+..+ ...+.+.++|+   +|.||.+||.+|
T Consensus       445 ~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~l  482 (960)
T 1wa5_C          445 STNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYI  482 (960)
T ss_dssp             CBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHH
Confidence            0  0  34443 45678888888   999999999764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.62  E-value=8.8e-16  Score=143.57  Aligned_cols=148  Identities=13%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCC-----------
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELD-----------   70 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~-----------   70 (165)
                      +.++++++..++|||.+++++-..             .+.  .+.+.+.+++.|+++++..|.+.+|++           
T Consensus       354 ~~~d~~v~~~~lefw~~l~~~l~~-------------~~~--~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r  418 (1049)
T 3m1i_C          354 KIEERELFKTTLDYWHNLVADLFY-------------EPL--KKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVR  418 (1049)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHH-------------STT--CGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEE
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHh-------------chh--HHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchH
Confidence            346788999999999999984211             011  122455677889999999998643211           


Q ss_pred             ----CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc--cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576         71 ----DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE--HADWRHRDAALMSFGAILVRPSFIITISERNFIME  144 (165)
Q Consensus        71 ----dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~--~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~  144 (165)
                          |+|+|+.+++++.+|+.++...|+.+++.+++++.++++  +.+|+.|+|+++|+|+|++++....-...++.+++
T Consensus       419 ~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~  498 (1049)
T 3m1i_C          419 EFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIK  498 (1049)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHH
Confidence                223578899999999999988888899999999999886  47999999999999999999887533345889999


Q ss_pred             HHHhhcC-----CCCHHHHHHHHhc
Q psy12576        145 VVCEATQ-----SPDTQIRVAALQC  164 (165)
Q Consensus       145 ~v~~~l~-----D~~p~VR~aA~~a  164 (165)
                      .+.....     ||+|+||..++.+
T Consensus       499 ~l~~l~~~~~~~~~~~~v~~~~~~~  523 (1049)
T 3m1i_C          499 DLLDLTVKKRGKDNKAVVASDIMYV  523 (1049)
T ss_dssp             HHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccchHHHHHHHHHH
Confidence            8876442     6899999877654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.58  E-value=2.1e-15  Score=138.67  Aligned_cols=150  Identities=12%  Similarity=0.168  Sum_probs=114.7

Q ss_pred             chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCC----Cc---CCC-
Q psy12576          4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELD----DE---DDW-   75 (165)
Q Consensus         4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~----dd---dew-   75 (165)
                      .+++++..++|||.++++....+.....          .......++.++.|+++++..|.+.+|++    |+   ++| 
T Consensus       352 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~----------~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~  421 (963)
T 2x19_B          352 VNETTSSLTLTFWYTLQDDILSFEAEKQ----------AVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFR  421 (963)
T ss_dssp             TTCGGGGGGHHHHHHHHHHHTTSCHHHH----------HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHHHHHHhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHH
Confidence            4677899999999999985432210000          11233566788889999999997543321    11   235 


Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhc----ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI----EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ  151 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l----~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~  151 (165)
                      +.+++++.+|+.++..+|+.+++.+++++.+.+    .+++|+.|+|++++||+|++|+.+.. ...++.+++. +..+.
T Consensus       422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-~~~l~~l~~~-l~~l~  499 (963)
T 2x19_B          422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-SDVVPGLIGL-IPRIS  499 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-CSHHHHHHHH-GGGSC
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-hHHHHHHHHH-HHhCC
Confidence            457889999999999999889999999999988    78899999999999999999998743 3478889995 45677


Q ss_pred             CCCHHHHHHHHhcC
Q psy12576        152 SPDTQIRVAALQCL  165 (165)
Q Consensus       152 D~~p~VR~aA~~al  165 (165)
                      +++|+||.+++.+|
T Consensus       500 ~~~~~vr~~~~~~l  513 (963)
T 2x19_B          500 ISNVQLADTVMFTI  513 (963)
T ss_dssp             CCSHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            78999999998763

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.53  E-value=1.6e-14  Score=135.94  Aligned_cols=147  Identities=12%  Similarity=0.169  Sum_probs=115.8

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCC----CCcCCC---
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEEL----DDEDDW---   75 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed----~dddew---   75 (165)
                      .++.+++..++|||.++++.-..             .|.+  +...+.++.+|+++++..|.+.+|+    +|+++|   
T Consensus       355 ~~d~ei~~~tl~FW~~L~~~l~~-------------e~~~--~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e  419 (1023)
T 4hat_C          355 IEERELFKTTLDYWHNLVADLFY-------------EPLK--KHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVRE  419 (1023)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTT-------------STTT--GGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEEC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHh-------------chHH--HHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHH
Confidence            46778999999999999984111             1111  2345677788999999999987642    233344   


Q ss_pred             --------chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHH
Q psy12576         76 --------NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSFIITISERNFIMEV  145 (165)
Q Consensus        76 --------~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~  145 (165)
                              +..+....+|..++...|+.+++.+++.+.+.+.+  .+|+.|+|+++|||+|++|+.+......++.+++.
T Consensus       420 ~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~  499 (1023)
T 4hat_C          420 FVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD  499 (1023)
T ss_dssp             SSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence                    45566668999999999988999999999888764  68999999999999999999986556789999999


Q ss_pred             HHhhcC-----CCCHHHHHHHHhc
Q psy12576        146 VCEATQ-----SPDTQIRVAALQC  164 (165)
Q Consensus       146 v~~~l~-----D~~p~VR~aA~~a  164 (165)
                      +++.+.     |+.++||..++..
T Consensus       500 Ll~l~~~~~~~d~k~~v~~t~~~~  523 (1023)
T 4hat_C          500 LLDLCVKKRGKDNKAVVASDIMYV  523 (1023)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccCcchHHHHHHHHHH
Confidence            998876     6889999877653

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.31  E-value=4.5e-12  Score=118.80  Aligned_cols=151  Identities=13%  Similarity=0.098  Sum_probs=108.7

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCC--C----cC--
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELD--D----ED--   73 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~--d----dd--   73 (165)
                      .+++++++..+++||.++.+.....  +       .+.+   .+...+..++.|++.++..|.+.++++  +    ||  
T Consensus       342 ~~~~deVs~~t~~Fw~~~l~~~~~~--~-------~~~~---~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~  409 (980)
T 3ibv_A          342 SDDYDETSTAVFPFLSDLLVSLRKE--S-------SSKE---LSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEA  409 (980)
T ss_dssp             TCSSHHHHHTTHHHHHHHHHHHHHH--T-------TSCC---CCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhc--c-------cccc---ccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHH
Confidence            4578899999999999999753221  0       0011   113456677889999999999754321  1    11  


Q ss_pred             CC-chhhHHHHHHHHHHHHcCCcchh----hHHHHHhhhc---ccCchHHHHHHHHHHHHhhcCCcchhc-----hHhHH
Q psy12576         74 DW-NPCKAAGVCLMLLSSCCEEDMVP----HILPFVNANI---EHADWRHRDAALMSFGAILVRPSFIIT-----ISERN  140 (165)
Q Consensus        74 ew-~~~~~a~~~Ld~la~~~~~~i~~----~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~EG~~~~~~-----~~~l~  140 (165)
                      +. ..++..+..+|.++...|+.+++    .+.+.+.+.+   .+.+|+.++||+++||+++|||.....     ...++
T Consensus       410 ~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp  489 (980)
T 3ibv_A          410 EFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPT  489 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC
T ss_pred             HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhH
Confidence            12 34555567788888877787888    7777777777   367899999999999999999986322     13577


Q ss_pred             HHHHHHHhhcC-----CCCHHHHHHHHhc
Q psy12576        141 FIMEVVCEATQ-----SPDTQIRVAALQC  164 (165)
Q Consensus       141 ~il~~v~~~l~-----D~~p~VR~aA~~a  164 (165)
                      .+++++.+.++     ++||+||++++..
T Consensus       490 ~l~~ll~~ll~s~i~~~~hp~V~~~~~~~  518 (980)
T 3ibv_A          490 VLSQILALVTTSQVCRHPHPLVQLLYMEI  518 (980)
T ss_dssp             HHHHHHHHHHHSSTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            88888887765     9999999999865

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.20  E-value=7.6e-11  Score=101.34  Aligned_cols=104  Identities=12%  Similarity=0.152  Sum_probs=88.2

Q ss_pred             HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      .+.++|.++.++.+       ++|+.+++|..+|..++..+++ ...+.++|++...+.+++|+.|++++.+||.++++.
T Consensus       201 ~~~l~~~l~~~~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~  273 (588)
T 1b3u_A          201 KSEIIPMFSNLASD-------EQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             HHTHHHHHHHHHTC-------SCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence            45678888777642       2478999999999999999994 567889999999999999999999999999999877


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +..   ...+.+++.+++.++|+++.||.+|+.+|
T Consensus       274 ~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  305 (588)
T 1b3u_A          274 GPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKV  305 (588)
T ss_dssp             CHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             Ccc---cchhHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            653   24678899999999999999999998764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.14  E-value=7.7e-10  Score=86.80  Aligned_cols=107  Identities=11%  Similarity=0.134  Sum_probs=88.4

Q ss_pred             HHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576         49 KGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV  128 (165)
Q Consensus        49 ~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E  128 (165)
                      .++.+.++|.+++.+.+..       ...+.+|..+|+.+....+   ++.++|.+...+++.+|+.|..++-.++.++.
T Consensus        93 ~~~~~~ilp~ll~~l~d~~-------~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~  162 (242)
T 2qk2_A           93 SNYASACVPSLLEKFKEKK-------PNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALT  162 (242)
T ss_dssp             HHHHHHHHHHHHHGGGCCC-------HHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            4456679999999887432       4678899999999988776   56677777788899999999999999999876


Q ss_pred             CCcch-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFI-ITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      -.... ....+++.++|.+.+.+.|+++.||.+|..|+
T Consensus       163 ~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l  200 (242)
T 2qk2_A          163 RTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEAL  200 (242)
T ss_dssp             TCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             HcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            55432 35568999999999999999999999998874

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.03  E-value=2.4e-09  Score=85.66  Aligned_cols=109  Identities=10%  Similarity=0.084  Sum_probs=89.9

Q ss_pred             HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc----chhhHHHHHhhhcccCchHHHHHHHHHHHH
Q psy12576         50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED----MVPHILPFVNANIEHADWRHRDAALMSFGA  125 (165)
Q Consensus        50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~----i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~  125 (165)
                      ++...++|.+++.+.+..       -++..++..+|+.+...++..    -++.+++.+...+++.+|+.|.+++.+++.
T Consensus       100 ~y~~~llp~ll~~l~dkk-------~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~  172 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKK-------PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA  172 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCC-------HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            344568999999887432       367899999999999998631    155788888899999999999999999999


Q ss_pred             hhcCCcc--hhchHhH-HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        126 ILVRPSF--IITISER-NFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       126 i~EG~~~--~~~~~~l-~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +++-...  ..+..++ +.++|.+.+.+.|+++.||.+|..||
T Consensus       173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l  215 (249)
T 2qk1_A          173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF  215 (249)
T ss_dssp             HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            9975553  3344689 99999999999999999999999874

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.01  E-value=2.6e-09  Score=91.73  Aligned_cols=157  Identities=13%  Similarity=0.051  Sum_probs=108.4

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhh-----hhhhh-hHHhhhcCCCCCccc--H---HHHH-----HHHhHHHHHHHHHhhc
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEV-----DLAIE-DSEAADFGRPPTRTS--R---FYAK-----GALQYLVPILTQKLTK   65 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~-----~~~~~-~~~~~~~g~~~~~~~--~---~~~~-----~~~~~l~p~ll~~l~~   65 (165)
                      ++++..|+..|++.+..+++.-.     ....+ .....+...+..|..  .   .+..     ...+.++|.+.+.+. 
T Consensus       174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-  252 (588)
T 1b3u_A          174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE-  252 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc-
Confidence            46788899999999999986311     11111 111222111111110  0   0111     122446666666553 


Q ss_pred             cCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc-hHhHHHHH
Q psy12576         66 QEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT-ISERNFIM  143 (165)
Q Consensus        66 ~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~-~~~l~~il  143 (165)
                            |.+|..++++..+|..++..+|. ...+.++|.+.+.+.+++|..|.+|..+||.++++++.... ..+++.++
T Consensus       253 ------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~  326 (588)
T 1b3u_A          253 ------DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL  326 (588)
T ss_dssp             ------CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHH
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHH
Confidence                  13599999999999999999884 45577888888899999999999999999999998876422 14678889


Q ss_pred             HHHHhhcCCCCHHHHHHHHhcC
Q psy12576        144 EVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       144 ~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |.+.+.++|++++||.+|+.+|
T Consensus       327 p~l~~~l~d~~~~vR~~a~~~l  348 (588)
T 1b3u_A          327 PCIKELVSDANQHVKSALASVI  348 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHTTG
T ss_pred             HHHHHHhcCCCHHHHHHHHHHH
Confidence            9988889999999999988764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.85  E-value=4e-09  Score=99.42  Aligned_cols=67  Identities=10%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH--HHHHHHHhc
Q psy12576         97 VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT--QIRVAALQC  164 (165)
Q Consensus        97 ~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p--~VR~aA~~a  164 (165)
                      +|.+++.+.+.+.+++|+.|.+++.+||.+++++... ...+++.+++.+++.+.|+++  .||.+|+.+
T Consensus       432 l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~  500 (1230)
T 1u6g_C          432 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSC  500 (1230)
T ss_dssp             TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh-hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            3455566666689999999999999999999987654 446899999999999999885  899888754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=7.3e-09  Score=81.16  Aligned_cols=103  Identities=10%  Similarity=0.003  Sum_probs=85.8

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCC
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIE-HADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      |.|.+++.+.+       .+|..++.|..+|..+....++   .-+..+++.+...+. +++...|.+|+.++|.++.+.
T Consensus        16 l~~~l~~~l~s-------~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l   88 (242)
T 2qk2_A           16 MPKDFYDKLEE-------KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL   88 (242)
T ss_dssp             SCTTHHHHHTC-------SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHhhhcc-------CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            44456666643       2499999999999999887553   234677888888995 999999999999999999988


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.. ..++.+.++|.+++.+.|++++||.+|..||
T Consensus        89 ~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL  122 (242)
T 2qk2_A           89 AKR-FSNYASACVPSLLEKFKEKKPNVVTALREAI  122 (242)
T ss_dssp             GGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             hhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            774 4679999999999999999999999998874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.76  E-value=9.4e-09  Score=93.57  Aligned_cols=107  Identities=12%  Similarity=0.182  Sum_probs=88.7

Q ss_pred             HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576         52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILV  128 (165)
Q Consensus        52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E  128 (165)
                      ++.++|.+.+.+..       .+|..+.+|..+|..++...++   ..++.++|.+.+.+.+++|+.|.+++.++|.+++
T Consensus       357 ~~~l~~~l~~~l~~-------~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          357 LPHILPLLKELLFH-------HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             HHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            35566666666542       2499999999999999887764   3568889999999999999999999999999998


Q ss_pred             CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .........+++.+++.+++.+.|++++||.+|+.+|
T Consensus       430 ~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL  466 (852)
T 4fdd_A          430 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF  466 (852)
T ss_dssp             HHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            7665434568999999999999999999999998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.64  E-value=2.1e-07  Score=83.41  Aligned_cols=111  Identities=7%  Similarity=0.079  Sum_probs=89.1

Q ss_pred             HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-----cchhhHHHHHhhhcccCchHHHHHHHH
Q psy12576         47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-----DMVPHILPFVNANIEHADWRHRDAALM  121 (165)
Q Consensus        47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-----~i~~~vl~~i~~~l~~~dw~~R~Aa~~  121 (165)
                      .+.+.++.++|.++..+.+       ..+..+.++..+|..++..++.     ..++.++|.+.+.+.++ ++.|.+|..
T Consensus       404 ~~~~~l~~il~~l~~~l~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~  475 (861)
T 2bpt_A          404 QRTYYVHQALPSILNLMND-------QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSW  475 (861)
T ss_dssp             HHHHHHHHHHHHHHHGGGC-------SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHH
Confidence            3455677788888887752       1367788888999999988753     45788888888888776 999999999


Q ss_pred             HHHHhhcCCcc---hhchHhHHHHHHHHHhhcC--CCCHHHHHHHHhcC
Q psy12576        122 SFGAILVRPSF---IITISERNFIMEVVCEATQ--SPDTQIRVAALQCL  165 (165)
Q Consensus       122 Alg~i~EG~~~---~~~~~~l~~il~~v~~~l~--D~~p~VR~aA~~al  165 (165)
                      +|+.+++++.+   ....++++.+++.+++.+.  |+++.||.+|+.+|
T Consensus       476 al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             HHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            99999998862   3455789999999999997  56689999988763

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.58  E-value=1.5e-07  Score=84.51  Aligned_cols=106  Identities=13%  Similarity=0.155  Sum_probs=84.7

Q ss_pred             HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E---DMVPHILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      ++.++|.+.+.+.+       .+|..+.+|..+|..++..++ +   ..++.++|.+...+.++++..|.+|+.++|.++
T Consensus       364 ~~~~l~~l~~~l~~-------~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~  436 (876)
T 1qgr_A          364 VPHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  436 (876)
T ss_dssp             HHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC-------CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            44555655555542       259999999999998887766 3   245678888888999999999999999999999


Q ss_pred             cCCcchh-chHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        128 VRPSFII-TISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       128 EG~~~~~-~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.+.... ...+++.+++.+++.+.|+ ++||.+|+.+|
T Consensus       437 ~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al  474 (876)
T 1qgr_A          437 ELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAF  474 (876)
T ss_dssp             HHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHH
T ss_pred             HhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence            9877643 4568999999999999996 99999988763

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.57  E-value=1.7e-07  Score=78.07  Aligned_cols=104  Identities=12%  Similarity=0.019  Sum_probs=79.8

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .++|.|+++|..       .+|.....|..+|..++...++   .++ ..++|.+.+.+.+++|..|++|+.+||.++.|
T Consensus       234 ~~i~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~  306 (450)
T 2jdq_A          234 GVCRRLVELLMH-------NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG  306 (450)
T ss_dssp             TTHHHHHHHTTC-------SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHCC-------CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            567888887752       2377888888888888765442   122 24777777888899999999999999999998


Q ss_pred             CcchhchHhH-HHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISER-NFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l-~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +...... .+ ..++|.+++.+.|+++.||.+|+.+|
T Consensus       307 ~~~~~~~-~~~~~~l~~L~~~l~~~~~~v~~~a~~~L  342 (450)
T 2jdq_A          307 NRAQIQT-VIDANIFPALISILQTAEFRTRKEAAWAI  342 (450)
T ss_dssp             CHHHHHH-HHHTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CHHHHHH-HHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8764322 23 47899999999999999999998764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.57  E-value=1.5e-06  Score=72.18  Aligned_cols=89  Identities=17%  Similarity=0.269  Sum_probs=75.2

Q ss_pred             chhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccC--chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576         76 NPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHA--DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS  152 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~--dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D  152 (165)
                      .. +.++.+|..++...+ +.-.|.++|++.+.++++  ++..|++|+.+|+.+++.........+.+.+++.+.+.++|
T Consensus       105 ~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~  183 (462)
T 1ibr_B          105 RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK  183 (462)
T ss_dssp             SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHST
T ss_pred             hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCC
Confidence            45 778899999998854 345788999999999998  99999999999999998653334567899999999999998


Q ss_pred             C--CHHHHHHHHhcC
Q psy12576        153 P--DTQIRVAALQCL  165 (165)
Q Consensus       153 ~--~p~VR~aA~~al  165 (165)
                      +  ++.||.+|+.|+
T Consensus       184 ~~~~~~vr~~a~~~l  198 (462)
T 1ibr_B          184 EEPSNNVKLAATNAL  198 (462)
T ss_dssp             TCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            8  899999998764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.55  E-value=5.2e-07  Score=85.08  Aligned_cols=107  Identities=14%  Similarity=0.128  Sum_probs=86.7

Q ss_pred             HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---------chhhHHHHHhhhcc-cCchHHHHHHH
Q psy12576         51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---------MVPHILPFVNANIE-HADWRHRDAAL  120 (165)
Q Consensus        51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---------i~~~vl~~i~~~l~-~~dw~~R~Aa~  120 (165)
                      .++.+++.+++.+.+.       +...+.+|..+|..++..++..         ..+.++|++.+.+. +++|..|++|+
T Consensus        83 ~~~~i~~~Ll~~l~d~-------~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al  155 (1230)
T 1u6g_C           83 QVETIVDTLCTNMLSD-------KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEAL  155 (1230)
T ss_dssp             HHHHHHHHHHHHTTCS-------SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Confidence            3456777777776521       2356888999999999999854         57889999999998 59999999999


Q ss_pred             HHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       121 ~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .+|+.+++..++. ...+++.+++.+++.+.|+++.||.+|+.||
T Consensus       156 ~~l~~~~~~~~~~-l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al  199 (1230)
T 1u6g_C          156 DIMADMLSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIAL  199 (1230)
T ss_dssp             HHHHHHHHHTCSS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            9999999755443 3458999999999999999999999998764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.55  E-value=1.6e-06  Score=69.32  Aligned_cols=138  Identities=12%  Similarity=0.040  Sum_probs=90.9

Q ss_pred             chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHh-hccCCCCCcCCCchhhHHH
Q psy12576          4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKL-TKQEELDDEDDWNPCKAAG   82 (165)
Q Consensus         4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l-~~~~ed~dddew~~~~~a~   82 (165)
                      .+-.+...|+++...+++.               -.+......+.......++|.|++.. .+..       -.....|.
T Consensus        67 sN~~v~~~al~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k-------~~~~~~a~  124 (278)
T 4ffb_C           67 SNVVAQEQAIVALNSLIDA---------------FASSSLKNAHNITLISTWTPLLVEKGLTSSR-------ATTKTQSM  124 (278)
T ss_dssp             SSHHHHHHHHHHHHHHHTT---------------CC---CCHHHHHHHHHHHHHHHHHHTSSCCC-------HHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHH---------------hhhhhcccchhHHHHHHHHHHHHHHHhcCcc-------HHHHHHHH
Confidence            3444556677777766652               01111122344455567788888763 3211       13344566


Q ss_pred             HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc--CCcchhchHhHHHHHHHHHhhcCCCCHHHHHH
Q psy12576         83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV--RPSFIITISERNFIMEVVCEATQSPDTQIRVA  160 (165)
Q Consensus        83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E--G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~a  160 (165)
                      .+|..+.....  ....+++.+...+.+-+|+.|.+++..|+.+++  |+.....+..++.+++.+.+.+.|+++.||.+
T Consensus       125 ~~l~~~~~~~~--~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~a  202 (278)
T 4ffb_C          125 SCILSLCGLDT--SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQ  202 (278)
T ss_dssp             HHHHHHHHTSS--SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHH
T ss_pred             HHHHHHHHhcC--cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHH
Confidence            66666655443  245567788889999999999999999998885  55443334468889999999999999999999


Q ss_pred             HHhcC
Q psy12576        161 ALQCL  165 (165)
Q Consensus       161 A~~al  165 (165)
                      |..++
T Consensus       203 A~~l~  207 (278)
T 4ffb_C          203 TMNLI  207 (278)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.50  E-value=4.9e-07  Score=85.67  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=103.9

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhH-H--hhhcCC-CC-CcccHHHHHHHHhHHHHHHHHHhhccCCC----CCcC
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDS-E--AADFGR-PP-TRTSRFYAKGALQYLVPILTQKLTKQEEL----DDED   73 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~-~--~~~~g~-~~-~~~~~~~~~~~~~~l~p~ll~~l~~~~ed----~ddd   73 (165)
                      .++.+++.-+++||..+.+.=..-. +.. +  ....|. .+ ....++..+..+..|..+++..|.+-+|.    +|+.
T Consensus       362 ~~d~ei~kitf~fW~~L~~~L~~e~-~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~g  440 (1073)
T 3gjx_A          362 VEETEIFKICLEYWNHLAAELYRES-PFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQG  440 (1073)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHC-CSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSS
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhc-cccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccc
Confidence            4678899999999999997522110 000 0  000000 00 01123445567778888888888865431    2221


Q ss_pred             C-----------CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhccc--CchHHHHHHHHHHHHhhcCCcc-hhchHhH
Q psy12576         74 D-----------WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEH--ADWRHRDAALMSFGAILVRPSF-IITISER  139 (165)
Q Consensus        74 e-----------w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg~i~EG~~~-~~~~~~l  139 (165)
                      |           -+.++.-..||..++...++.++..+++.+.+.+.+  .+|+.++|+++|+|+|+ |+-. ..-+..+
T Consensus       441 e~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~L  519 (1073)
T 3gjx_A          441 EVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFL  519 (1073)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHH
T ss_pred             hHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchH
Confidence            2           135677788999988666678888889988877654  46999999999999999 5554 3344579


Q ss_pred             HHHHHHHHhhcCCC-----CHHHHHHHH
Q psy12576        140 NFIMEVVCEATQSP-----DTQIRVAAL  162 (165)
Q Consensus       140 ~~il~~v~~~l~D~-----~p~VR~aA~  162 (165)
                      +.+++.+++....+     .++||...+
T Consensus       520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~  547 (1073)
T 3gjx_A          520 VTVIKDLLGLCEQKRGKDNKAIIASNIM  547 (1073)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccccchhHHHHHHHH
Confidence            99999999887555     466666554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.50  E-value=7.5e-07  Score=82.49  Aligned_cols=111  Identities=7%  Similarity=-0.010  Sum_probs=80.0

Q ss_pred             HHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc-----C-C------cchhhHHHHHhhhcccC---chH
Q psy12576         50 GALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC-----E-E------DMVPHILPFVNANIEHA---DWR  114 (165)
Q Consensus        50 ~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~-----~-~------~i~~~vl~~i~~~l~~~---dw~  114 (165)
                      ..++.+++.+.+++.+...+. ..+|....+|..++..+|...     | .      .+.+.+..++.+.++++   .+.
T Consensus       395 ~v~~~~l~~i~~~l~~~~~~~-~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~  473 (960)
T 1wa5_C          395 LVTNIFLAHMKGFVDQYMSDP-SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHII  473 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHH
T ss_pred             hHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCce
Confidence            345556666666665322221 235999999999999998542     2 1      33344444555566776   899


Q ss_pred             HHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        115 HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       115 ~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .|.+|++++|..++-..    ..++..+++.+++++.|++++||.+|+.||
T Consensus       474 vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al  520 (960)
T 1wa5_C          474 LRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQTDEYVVYTYAAITI  520 (960)
T ss_dssp             HHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            99999999999998642    357999999999999999999999999874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.48  E-value=2.1e-06  Score=65.15  Aligned_cols=133  Identities=21%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN   76 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~   76 (165)
                      ++++..+...|++....+.+.+  ......+.+...   ....+..+-.++     +..+|.|++.|.+       +++.
T Consensus        29 ~~~~~~vR~~A~~~L~~~~~~~--~~~~L~~~l~~~---~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-------~~~~   96 (211)
T 3ltm_A           29 QDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDE---DAWVRRAAADALGQIGDERAVEPLIKALKD-------EDGW   96 (211)
T ss_dssp             TCSSHHHHHHHHHHHHHHCCGG--GHHHHHHHTTCS---CHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred             cCCCHHHHHHHHHHHHHhCCcc--HHHHHHHHHcCC---CHHHHHHHHHHHHhhCCHHHHHHHHHHHcC-------CCHH
Confidence            4566777777777777766521  111122222221   111111111111     3455666666532       1234


Q ss_pred             hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576         77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ  156 (165)
Q Consensus        77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~  156 (165)
                      .+..|..+|..+    ++   +..++.+.+.+.+++|..|.+|+.+||.+..           +..++.+.+.+.|+++.
T Consensus        97 vr~~a~~aL~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~  158 (211)
T 3ltm_A           97 VRQSAAVALGQI----GD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGW  158 (211)
T ss_dssp             HHHHHHHHHHHH----CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHh----Cc---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHH
Confidence            455554444433    21   2233444445566677777777777766642           11244444555555555


Q ss_pred             HHHHHHhc
Q psy12576        157 IRVAALQC  164 (165)
Q Consensus       157 VR~aA~~a  164 (165)
                      ||.+|..+
T Consensus       159 vr~~a~~a  166 (211)
T 3ltm_A          159 VRQSAADA  166 (211)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.47  E-value=2.3e-06  Score=64.39  Aligned_cols=133  Identities=21%  Similarity=0.141  Sum_probs=66.1

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN   76 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~   76 (165)
                      ++++..+...|++....+...+  ......+.+..+.   ...+..+-.++     +..+|.|++.|.+       +++.
T Consensus        24 ~~~~~~vr~~A~~~L~~~~~~~--~~~~L~~~l~~~~---~~vr~~a~~~L~~~~~~~~~~~L~~~l~d-------~~~~   91 (201)
T 3ltj_A           24 QDDSYYVRRAAAYALGKIGDER--AVEPLIKALKDED---AWVRRAAADALGQIGDERAVEPLIKALKD-------EDGW   91 (201)
T ss_dssp             TCSCHHHHHHHHHHHHHHCCGG--GHHHHHHHTTCSS---HHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred             cCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHcCCC---HHHHHHHHHHHHhhCCHHHHHHHHHHHcC-------CCHH
Confidence            5667778888888777776522  1122222332221   11111111111     3456666666642       1244


Q ss_pred             hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576         77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ  156 (165)
Q Consensus        77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~  156 (165)
                      .+..|..+|..+    ++   +..++.+.+.+.+++|..|.+|+.+||.+..           +..++.+.+.+.|+++.
T Consensus        92 vr~~a~~aL~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~  153 (201)
T 3ltj_A           92 VRQSAAVALGQI----GD---ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGW  153 (201)
T ss_dssp             HHHHHHHHHHHH----CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHh----Cc---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHH
Confidence            555555554433    21   1233334445566777777777777776642           12344455555566666


Q ss_pred             HHHHHHhc
Q psy12576        157 IRVAALQC  164 (165)
Q Consensus       157 VR~aA~~a  164 (165)
                      ||.+|+.+
T Consensus       154 vr~~A~~a  161 (201)
T 3ltj_A          154 VRQSAADA  161 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665544

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.47  E-value=1.8e-06  Score=70.11  Aligned_cols=95  Identities=19%  Similarity=0.183  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhc--CCc
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILV--RPS  131 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E--G~~  131 (165)
                      .++|.|++.+-+..       -..+..+...|..+...+|.   ..+++++-+.+.|-+||.|...+-.++++.+  |..
T Consensus       132 ~~lP~LveKlGd~k-------~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~  201 (266)
T 2of3_A          132 AFVPYLLLKTGEAK-------DNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS  201 (266)
T ss_dssp             HHHHHHHHGGGCSS-------HHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHhCCCh-------HHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence            47888888876433       26788888889888877662   2255566668899999999999999999986  655


Q ss_pred             chhchHhHHHHH---HHHHhhcCCCCHHHHHHHHhcC
Q psy12576        132 FIITISERNFIM---EVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       132 ~~~~~~~l~~il---~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .       ...+   |.|++.+.|++..||.||++|+
T Consensus       202 ~-------~~~l~~~~~ia~ll~D~d~~VR~aAl~~l  231 (266)
T 2of3_A          202 P-------LKSLSVEKTVAPFVGDKDVNVRNAAINVL  231 (266)
T ss_dssp             G-------GGGGCHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             c-------cccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence            2       1246   9999999999999999999885

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.46  E-value=1.2e-06  Score=66.13  Aligned_cols=137  Identities=17%  Similarity=0.095  Sum_probs=95.3

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      ++++.++...|......++....+.                 ...++.   ...+|.|+++|...       +......|
T Consensus        22 ~s~~~~v~~~a~~~L~~l~~~~~~~-----------------~~~i~~---~g~i~~L~~lL~~~-------~~~v~~~a   74 (210)
T 4db6_A           22 NSPDQQELQSALRKLSQIASGGNEQ-----------------IQAVID---AGALPALVQLLSSP-------NEQILQEA   74 (210)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSCHHH-----------------HHHHHH---TTHHHHHHHHTTCS-------CHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCHHH-----------------HHHHHH---cCCHHHHHHHHcCC-------CHHHHHHH
Confidence            5778888888988888888421110                 011222   25788888888642       24567777


Q ss_pred             HHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576         82 GVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI  157 (165)
Q Consensus        82 ~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V  157 (165)
                      ..+|..|+..-++   .++ .-.+|.+...+.++++..|+.|+.+|+.++.+.......-.-..+++.+++.+.++++.|
T Consensus        75 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v  154 (210)
T 4db6_A           75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI  154 (210)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence            7777777643322   122 235677777888999999999999999999876653222223568999999999999999


Q ss_pred             HHHHHhcC
Q psy12576        158 RVAALQCL  165 (165)
Q Consensus       158 R~aA~~al  165 (165)
                      |..|+.+|
T Consensus       155 ~~~a~~aL  162 (210)
T 4db6_A          155 LQEALWAL  162 (210)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.43  E-value=3e-07  Score=73.32  Aligned_cols=92  Identities=13%  Similarity=0.039  Sum_probs=75.5

Q ss_pred             CCchhhHHHHHHHH-HHHHcCCcc-----hhhHHHHHhhhc-ccCchHHHHHHHHHHHHhhcCCc-chhchHhHHHHHHH
Q psy12576         74 DWNPCKAAGVCLML-LSSCCEEDM-----VPHILPFVNANI-EHADWRHRDAALMSFGAILVRPS-FIITISERNFIMEV  145 (165)
Q Consensus        74 ew~~~~~a~~~Ld~-la~~~~~~i-----~~~vl~~i~~~l-~~~dw~~R~Aa~~Alg~i~EG~~-~~~~~~~l~~il~~  145 (165)
                      .|..+++|..+|-. +...+++..     +..++..+.+.+ .+.+...|.+|+.++|.+++|.. +.+..+|...++|.
T Consensus        29 ~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~  108 (249)
T 2qk1_A           29 KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTP  108 (249)
T ss_dssp             SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence            49999998888777 654444322     245788888889 79999999999999999999998 65432799999999


Q ss_pred             HHhhcCCCCHHHHHHHHhcC
Q psy12576        146 VCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       146 v~~~l~D~~p~VR~aA~~al  165 (165)
                      +++.+.|..+.||.+|..||
T Consensus       109 ll~~l~dkk~~V~~aa~~al  128 (249)
T 2qk1_A          109 LLDRTKEKKPSVIEAIRKAL  128 (249)
T ss_dssp             HHHGGGCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHH
Confidence            99999999999999987764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.39  E-value=3.5e-06  Score=63.86  Aligned_cols=134  Identities=19%  Similarity=0.107  Sum_probs=87.0

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN   76 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~   76 (165)
                      ++++..+...|++....+...+  ......+++..   +....+..+-.++     +..+|.|++.+.+       +++.
T Consensus        60 ~~~~~~vr~~a~~aL~~~~~~~--~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-------~~~~  127 (211)
T 3ltm_A           60 KDEDAWVRRAAADALGQIGDER--AVEPLIKALKD---EDGWVRQSAAVALGQIGDERAVEPLIKALKD-------EDWF  127 (211)
T ss_dssp             TCSCHHHHHHHHHHHHHHCCGG--GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred             cCCCHHHHHHHHHHHHhhCCHH--HHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhC-------CCHH
Confidence            4567788888988888877532  11122223321   2111222222222     3467788877742       2467


Q ss_pred             hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576         77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ  156 (165)
Q Consensus        77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~  156 (165)
                      .+..|..+|..+    |+   +..++.+.+.+.+++|..|.+|+.+||.+..           +.+++.+.+.++|+++.
T Consensus       128 vr~~a~~aL~~~----~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~  189 (211)
T 3ltm_A          128 VRIAAAFALGEI----GD---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGF  189 (211)
T ss_dssp             HHHHHHHHHHHH----CC---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHc----CC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHH
Confidence            777777777655    32   2345555667789999999999999999953           45677778888899999


Q ss_pred             HHHHHHhcC
Q psy12576        157 IRVAALQCL  165 (165)
Q Consensus       157 VR~aA~~al  165 (165)
                      ||.+|..+|
T Consensus       190 vr~~A~~aL  198 (211)
T 3ltm_A          190 ARKVAVNYL  198 (211)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.39  E-value=1.3e-06  Score=67.58  Aligned_cols=105  Identities=20%  Similarity=0.137  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..+|.|+++|...       ++.....|..+|..|+..-+..   ++ .-++|.+.+.+.++++..|+.|+.+|+.++.+
T Consensus        96 g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           96 GALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             THHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHcCC-------CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            4788888888742       2567777888888776544422   22 23677777888899999999999999999987


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..+++.+++.+.++++.||..|+.+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  204 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  204 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence            755322212267899999999999999999998764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.37  E-value=7e-07  Score=63.72  Aligned_cols=85  Identities=16%  Similarity=0.120  Sum_probs=61.6

Q ss_pred             HHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhc
Q psy12576         56 VPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIIT  135 (165)
Q Consensus        56 ~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~  135 (165)
                      +|.|++.|.+       ++|..+..|..+|..+    ++   +..++.+.+.+.+++|..|.+|+.+||.+..       
T Consensus        44 ~~~L~~~L~d-------~~~~vR~~A~~aL~~~----~~---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------  102 (131)
T 1te4_A           44 FEPLLESLSN-------EDWRIRGAAAWIIGNF----QD---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------  102 (131)
T ss_dssp             HHHHHHGGGC-------SCHHHHHHHHHHHGGG----CS---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------
T ss_pred             HHHHHHHHcC-------CCHHHHHHHHHHHHhc----CC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence            4666666642       2377777776665543    22   3345555566679999999999999999862       


Q ss_pred             hHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        136 ISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       136 ~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                          +..++.+.+.++|+++.||.+|..+|
T Consensus       103 ----~~a~~~L~~~l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A          103 ----ERVRAAMEKLAETGTGFARKVAVNYL  128 (131)
T ss_dssp             ----HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             ----HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence                34577788888999999999998875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.35  E-value=2.4e-06  Score=64.40  Aligned_cols=105  Identities=16%  Similarity=0.104  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..+|.|+++|...       +......|..+|..|+..-++.   ++ .-++|.+.+.+.+++...|+.|+.+|+.++.+
T Consensus        96 g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           96 GALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             TCHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHcCC-------cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            4678888888642       2566777888888887543321   22 33567777778888999999999999999987


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-...++.+++.+.++++.||..|+.+|
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL  204 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL  204 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            554322222356899999999999999999998875

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.34  E-value=9.7e-07  Score=76.11  Aligned_cols=105  Identities=9%  Similarity=0.016  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .++|.|+++|...       +|.....|..+|..++...+.   .++ ..++|.+...+.+++|..|++|+.+||.++.|
T Consensus       299 ~~v~~Lv~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~  371 (530)
T 1wa5_B          299 RIPKRLVELLSHE-------STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG  371 (530)
T ss_dssp             TCHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHCCC-------ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            5778888887632       367777777777777643332   122 35677777888899999999999999999998


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..++|.+++.+.++++.||.+|+.+|
T Consensus       372 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL  407 (530)
T 1wa5_B          372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI  407 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            765332211246889999999999999999998764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=98.33  E-value=2.8e-06  Score=65.68  Aligned_cols=105  Identities=20%  Similarity=0.126  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..+|.|+++|...+       ......|..+|..++..-++   .++. -.+|.+...+.++++..|+.|+.+|+.++.+
T Consensus        54 g~i~~L~~lL~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~  126 (252)
T 4db8_A           54 GALPALVQLLSSPN-------EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  126 (252)
T ss_dssp             THHHHHHHGGGCSC-------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence            57888888887432       45677777778777653331   2332 3677777888889999999999999999988


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..++|.+++.+.++++.||..|+.+|
T Consensus       127 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L  162 (252)
T 4db8_A          127 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL  162 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            765322223356899999999999999999998764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.32  E-value=5.3e-06  Score=63.46  Aligned_cols=105  Identities=21%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..+|.|+++|...       ++.....|..+|..|+..-++.   ++ .-+++.+.+.+.++++..|..|+.+|+.++.+
T Consensus       128 ~~i~~L~~~l~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  200 (252)
T 4hxt_A          128 GGVEVLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG  200 (252)
T ss_dssp             THHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            5788888887732       2567788888888887654321   11 34667777788899999999999999999986


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..+++.+++.+.++++.||..|+.+|
T Consensus       201 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L  236 (252)
T 4hxt_A          201 PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL  236 (252)
T ss_dssp             BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence            554322212356889999999999999999998764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.31  E-value=4.6e-06  Score=65.90  Aligned_cols=78  Identities=12%  Similarity=-0.023  Sum_probs=44.8

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      +..+..+..+|..++...+ ...+.+++.+...+.+++|..|.+|+.++|.+..           +..++.+.+.+.|++
T Consensus       105 ~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~  172 (280)
T 1oyz_A          105 ACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPN  172 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCC
Confidence            4555555555555544333 2345566666666666666666666666666543           113555666666777


Q ss_pred             HHHHHHHHhc
Q psy12576        155 TQIRVAALQC  164 (165)
Q Consensus       155 p~VR~aA~~a  164 (165)
                      +.||.+|..+
T Consensus       173 ~~vr~~a~~a  182 (280)
T 1oyz_A          173 GDVRNWAAFA  182 (280)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777766654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.31  E-value=8.4e-06  Score=61.26  Aligned_cols=134  Identities=19%  Similarity=0.110  Sum_probs=86.5

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHH-----hHHHHHHHHHhhccCCCCCcCCCc
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGAL-----QYLVPILTQKLTKQEELDDEDDWN   76 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~l~p~ll~~l~~~~ed~dddew~   76 (165)
                      ++++..+...|++....+...+  ......+++..   +....+..+-.++     +..+|.|++.+.+       +++.
T Consensus        55 ~~~~~~vr~~a~~~L~~~~~~~--~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d-------~~~~  122 (201)
T 3ltj_A           55 KDEDAWVRRAAADALGQIGDER--AVEPLIKALKD---EDGWVRQSAAVALGQIGDERAVEPLIKALKD-------EDWF  122 (201)
T ss_dssp             TCSSHHHHHHHHHHHHHHCCGG--GHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTC-------SSHH
T ss_pred             cCCCHHHHHHHHHHHHhhCCHH--HHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcC-------CCHH
Confidence            4567778888888887776532  11122223321   2111222222222     3467778777742       2367


Q ss_pred             hhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHH
Q psy12576         77 PCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQ  156 (165)
Q Consensus        77 ~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~  156 (165)
                      .+..|..+|..+.   .    +..++.+.+.+.+++|..|.+|+.+||.+..           +..++.+.+.++|+++.
T Consensus       123 vr~~a~~aL~~~~---~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~  184 (201)
T 3ltj_A          123 VRIAAAFALGEIG---D----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGF  184 (201)
T ss_dssp             HHHHHHHHHHHHT---C----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHhC---C----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHH
Confidence            7777777776653   1    3455566677789999999999999999942           34567777788899999


Q ss_pred             HHHHHHhcC
Q psy12576        157 IRVAALQCL  165 (165)
Q Consensus       157 VR~aA~~al  165 (165)
                      ||.+|..+|
T Consensus       185 vr~~A~~aL  193 (201)
T 3ltj_A          185 ARKVAVNYL  193 (201)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=98.30  E-value=5.1e-06  Score=63.57  Aligned_cols=105  Identities=21%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..+|.++++|...       +......|..+|..|+...++   .++ .-+++.+.+.+.++++..|..++.+|+.++.+
T Consensus        86 ~~i~~l~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~  158 (252)
T 4hxt_A           86 GGVEVLVKLLTST-------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG  158 (252)
T ss_dssp             THHHHHHHHTTCS-------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            5688888888732       246677777788877753332   122 23667777788899999999999999999987


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..+++.+++.+.++++.||..|+.+|
T Consensus       159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  194 (252)
T 4hxt_A          159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL  194 (252)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence            655322222367899999999999999999998764

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.26  E-value=1.5e-06  Score=83.00  Aligned_cols=145  Identities=10%  Similarity=0.083  Sum_probs=96.4

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHH---HHHhhccCC----------
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPIL---TQKLTKQEE----------   68 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~l---l~~l~~~~e----------   68 (165)
                      +++++.++..+++||.++.+.+.-           +.      ....+.+++.|++++   +..|.+.++          
T Consensus       361 ~~~~~~vs~~~l~fW~~ll~~~~~-----------~~------~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~  423 (1204)
T 3a6p_A          361 THPSQFLRSSTQMTWGALFRHEIL-----------SR------DPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSR  423 (1204)
T ss_dssp             TSSCHHHHHHHHHHHHHHHSCTTT-----------TT------CHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHH
T ss_pred             hCccHHhHHHHHHHHHHHHhcccc-----------cc------cHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhh
Confidence            456788999999999999975320           00      013556677888888   444433221          


Q ss_pred             --CCCcCC-----CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc-------------------------cCchHHH
Q psy12576         69 --LDDEDD-----WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE-------------------------HADWRHR  116 (165)
Q Consensus        69 --d~ddde-----w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~-------------------------~~dw~~R  116 (165)
                        +|+++|     |+.++..+..|+.++...|...++.+++++.+.+.                         ++.|..+
T Consensus       424 ~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  503 (1204)
T 3a6p_A          424 FDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQW  503 (1204)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHH
Confidence              111112     57788899999999999998778777777744332                         4679999


Q ss_pred             HHHHHHHHHhhcCCcchhchHh-----HHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        117 DAALMSFGAILVRPSFIITISE-----RNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       117 ~Aa~~Alg~i~EG~~~~~~~~~-----l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      +|.+.+++++++|+....-..+     .+.+++.+++ +...+|.+|+.++.|
T Consensus       504 ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~-~~~~~p~l~~~~i~~  555 (1204)
T 3a6p_A          504 EAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLN-FDTKDPLILSCVLTN  555 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHH-CCCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHh-CCCCChHHHHHHHHH
Confidence            9999999999999954221122     3445554222 245688999888765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=98.22  E-value=1.1e-05  Score=66.85  Aligned_cols=106  Identities=17%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc-CC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC-EE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~-~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .++|.+++++...      .++.....|..+|..|+... +.   .++..++|.+.+.+.++++..|..++.+|+.++++
T Consensus       149 ~~i~~L~~~l~~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          149 NILPPLLQLFSKQ------NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             TCHHHHHHHTTSC------CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHhcCC------CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            4678888887631      23678888899999888654 21   34577888888888899999999999999999987


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ..+....-....+++.+++.+.++++.||.+|+.+|
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L  258 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAV  258 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHH
Confidence            654322212346889999999999999999998764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=98.20  E-value=7.9e-06  Score=70.37  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILV  128 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E  128 (165)
                      ..++|.|+.+|...       +......|..+|..|+...++   .++ ..++|.+.+.+.+++|..|..|+.+||.++.
T Consensus       256 ~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          256 SQALPTLAKLIYSM-------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             GGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence            45777888877531       246677788888888764332   122 2456667777889999999999999999999


Q ss_pred             CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |.......-.-..+++.+++.+.++++.||.+|+.+|
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL  365 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  365 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            8765322112247899999999999999999998764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=98.18  E-value=1e-05  Score=69.44  Aligned_cols=106  Identities=13%  Similarity=0.045  Sum_probs=82.0

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      ..+|.|++.|...      .++.....+..+|..|+...+.   .++..++|.+...+.++++..|..|+.+|+.++.|.
T Consensus       202 g~l~~Ll~lL~~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~  275 (528)
T 4b8j_A          202 GALLPLLAQLNEH------TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT  275 (528)
T ss_dssp             TCHHHHHHTCCTT------CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred             CcHHHHHHHHhcC------CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            4677777777422      1367788888899988877553   345678888888999999999999999999999987


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ......-.-..+++.+++.+.++++.||..|+.+|
T Consensus       276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L  310 (528)
T 4b8j_A          276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV  310 (528)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence            65322212246889999999999999999998764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.17  E-value=6.5e-06  Score=64.99  Aligned_cols=75  Identities=15%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      +..+..|..+|..++.   ..    .+|.+.+.+.+++|..|.+|+.+||.+..+         -+.+++.+.+.+.|++
T Consensus       142 ~~vR~~a~~aL~~~~~---~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~  205 (280)
T 1oyz_A          142 TNVRRATAFAISVIND---KA----TIPLLINLLKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKN  205 (280)
T ss_dssp             HHHHHHHHHHHHTC------C----CHHHHHHHHTCSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHhcCC---HH----HHHHHHHHHcCCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCC
Confidence            5666666666554322   23    344444556788888888888888887421         1345677788888888


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      +.||..|+.+|
T Consensus       206 ~~vR~~A~~aL  216 (280)
T 1oyz_A          206 EEVRIEAIIGL  216 (280)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888887654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.12  E-value=3e-05  Score=68.31  Aligned_cols=79  Identities=6%  Similarity=0.053  Sum_probs=66.6

Q ss_pred             HHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576         84 CLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus        84 ~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~  163 (165)
                      +|..|+......+.+.++|.+.+.+.|+++..|++|++|++.+.....+. ..  -+.+++.+.+.|.|++|.||.+|..
T Consensus       106 AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~-~~--~~~~~~~l~~lL~d~d~~V~~~A~~  182 (591)
T 2vgl_B          106 AVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM-VE--DQGFLDSLRDLIADSNPMVVANAVA  182 (591)
T ss_dssp             HHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC-HH--HHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh-cc--cccHHHHHHHHhCCCChhHHHHHHH
Confidence            37788877777899999999999999999999999999999999854432 21  2478999999999999999999987


Q ss_pred             cC
Q psy12576        164 CL  165 (165)
Q Consensus       164 al  165 (165)
                      +|
T Consensus       183 aL  184 (591)
T 2vgl_B          183 AL  184 (591)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.00  E-value=3.6e-05  Score=62.94  Aligned_cols=138  Identities=8%  Similarity=-0.011  Sum_probs=91.7

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      ++++.++..+|...+.+++..-                |  .++..+.+  ...+|.|+++|....      +-+..+.|
T Consensus        92 ~s~~~~vr~~Aa~~Lg~ia~~n----------------~--~~~~~vv~--~g~l~~Ll~LL~~~~------~~~v~~~A  145 (296)
T 1xqr_A           92 EAGAAGLRWRAAQLIGTCSQNV----------------A--AIQEQVLG--LGALRKLLRLLDRDA------CDTVRVKA  145 (296)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTC----------------H--HHHHHHHH--TTHHHHHHHHHHHCS------CHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhCC----------------H--HHHHHHHH--CCCHHHHHHHHccCC------CHHHHHHH
Confidence            4566777788888888877421                1  01111211  246777777776421      13556677


Q ss_pred             HHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576         82 GVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI  157 (165)
Q Consensus        82 ~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V  157 (165)
                      ..+|..|+...+.   .++ ...+|.+...+++++.+.|..|++||+.++.|-.+....-.-..+++.++..|.++++.|
T Consensus       146 ~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v  225 (296)
T 1xqr_A          146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF  225 (296)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred             HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhH
Confidence            7777777654432   222 236667777788899999999999999999884433222123578899999999999999


Q ss_pred             HHHHHhcC
Q psy12576        158 RVAALQCL  165 (165)
Q Consensus       158 R~aA~~al  165 (165)
                      |..|+.+|
T Consensus       226 ~~~al~aL  233 (296)
T 1xqr_A          226 HEHVLGAL  233 (296)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=97.91  E-value=1.7e-05  Score=68.06  Aligned_cols=105  Identities=12%  Similarity=0.039  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccC-chHHHHHHHHHHHHhhc
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHA-DWRHRDAALMSFGAILV  128 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~E  128 (165)
                      .++|.|+++|...       ++.....|..+|..|+...+.   .++ ..++|.+...+.++ ++..|+.|+.+|+.++.
T Consensus       286 g~v~~Lv~lL~~~-------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          286 GVCPRLVELLLHP-------SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             TCHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCC-------ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            5788888888643       256677777777777653332   122 33567777777788 99999999999999998


Q ss_pred             CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |.......-.-..++|.+++.+.++++.||..|+.+|
T Consensus       359 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL  395 (528)
T 4b8j_A          359 GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI  395 (528)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            8655332222347889999999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.86  E-value=5.4e-05  Score=71.20  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=87.2

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccC-chHHHHHHHHHHHHhhcCCcc
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHA-DWRHRDAALMSFGAILVRPSF  132 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i~EG~~~  132 (165)
                      .++|.+|....+.+       -.++++|..+++.+...++..-++.++|.+-.++.+. .|+.+.+|+-.++.+++-.. 
T Consensus        95 ~~~~~~~~~~~dk~-------~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~-  166 (986)
T 2iw3_A           95 QLVPAICTNAGNKD-------KEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK-  166 (986)
T ss_dssp             TTHHHHHHHTTCSS-------HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH-
T ss_pred             HHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH-
Confidence            36777777766432       4789999999999999999755688899888888765 69999999999999999774 


Q ss_pred             hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        133 IITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      ......++.|+|++...+-|-.|.|..+|..+
T Consensus       167 ~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~  198 (986)
T 2iw3_A          167 DQVALRMPELIPVLSETMWDTKKEVKAAATAA  198 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHhccchhcchHhhcccCcHHHHHHHHHH
Confidence            45666899999999999999999999999765

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=97.82  E-value=4.7e-05  Score=67.07  Aligned_cols=83  Identities=17%  Similarity=0.154  Sum_probs=68.0

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      ....+.+..++..++..-++ ++..+.+.+.+-++++|+..|..|+.++|.+.   .+    ...+.+++.+.+.+.|++
T Consensus        63 ~~~Krl~yl~l~~~~~~~~e-~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~----~~~~~l~~~l~~~L~d~~  134 (591)
T 2vgl_B           63 LELKKLVYLYLMNYAKSQPD-MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VD----KITEYLCEPLRKCLKDED  134 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHSHH-HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SG----GGHHHHHHHHHHHSSCSC
T ss_pred             HHHHHHHHHHHHHHcccCch-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hH----HHHHHHHHHHHHHcCCCC
Confidence            56778888888888776553 55666788888999999999999999999996   22    246778899999999999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      |.||.+|+.||
T Consensus       135 ~~VRk~A~~al  145 (591)
T 2vgl_B          135 PYVRKTAAVCV  145 (591)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999998774

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.77  E-value=1.5e-05  Score=70.87  Aligned_cols=79  Identities=10%  Similarity=0.093  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      +.+|..|+......+.+.+++.+.+.+.++++..|++|++|++.+..+..+     .++.+++.+.+.+.|++|.|+.+|
T Consensus       125 ~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-----~v~~~~~~l~~lL~D~d~~V~~~A  199 (618)
T 1w63_A          125 GLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-----LMEMFLPATKNLLNEKNHGVLHTS  199 (618)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-----GGGGGGGGTTTSTTCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-----HHHHHHHHHHHHhCCCCHhHHHHH
Confidence            345667777666678899999999999999999999999999999987654     234678888889999999999999


Q ss_pred             HhcC
Q psy12576        162 LQCL  165 (165)
Q Consensus       162 ~~al  165 (165)
                      +.+|
T Consensus       200 l~~L  203 (618)
T 1w63_A          200 VVLL  203 (618)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.76  E-value=2.4e-05  Score=55.56  Aligned_cols=86  Identities=14%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI  133 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~  133 (165)
                      .-++.++..|.+.       ++..+..|..+|..    +|+.-    ++.+.+.+.+++|..|.+|+.+||.+..     
T Consensus        12 ~~~~~l~~~L~~~-------~~~vR~~A~~~L~~----~~~~~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           12 SGLVPRGSHMADE-------NKWVRRDVSTALSR----MGDEA----FEPLLESLSNEDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             ---------CCSS-------CCCSSSSCCSSTTS----CSSTT----HHHHHHGGGCSCHHHHHHHHHHHGGGCS-----
T ss_pred             ccHHHHHHHhcCC-------CHHHHHHHHHHHHH----hCchH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-----
Confidence            3455666665421       25555555544432    24322    3566677889999999999999999863     


Q ss_pred             hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        134 ITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       134 ~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                            +..++.+.+.+.|+++.||.+|+.+|
T Consensus        72 ------~~a~~~L~~~L~d~~~~VR~~A~~aL   97 (131)
T 1te4_A           72 ------ERAVEPLIKLLEDDSGFVRSGAARSL   97 (131)
T ss_dssp             ------HHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                  23477778888999999999998764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.57  E-value=0.00036  Score=54.51  Aligned_cols=141  Identities=13%  Similarity=0.084  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhHhhhhhhhhhHHhh----hcC-CCCC------------cccHHHHHHHHhHHHHHHHHHhhccCCCC
Q psy12576          8 VALQGIEFWSNVSDEEVDLAIEDSEAA----DFG-RPPT------------RTSRFYAKGALQYLVPILTQKLTKQEELD   70 (165)
Q Consensus         8 va~~aiEfw~tl~e~e~~~~~~~~~~~----~~g-~~~~------------~~~~~~~~~~~~~l~p~ll~~l~~~~ed~   70 (165)
                      |..+|+-...+++++..++..+...-+    ... ..|.            +..+..++    .++|+++....-.+   
T Consensus        48 V~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~----~vVp~lfanyrigd---  120 (253)
T 2db0_A           48 VVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK----SMIPVLFANYRIGD---  120 (253)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHSCCCS---
T ss_pred             HHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH----hhHHHHHHHHhcCC---
Confidence            788999999999998888887754410    000 0111            11222333    46777777666432   


Q ss_pred             CcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576         71 DEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT  150 (165)
Q Consensus        71 dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l  150 (165)
                          --..-.-+.+|..++.+.|. +++.++.-+-..+.|+|-..|-+|+-.+|+++|.--     .|....+|.+...|
T Consensus       121 ----~kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~-----~yv~PfLprL~aLL  190 (253)
T 2db0_A          121 ----EKTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF-----KYVNPFLPRIINLL  190 (253)
T ss_dssp             ----HHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH-----HHHGGGHHHHHGGG
T ss_pred             ----ccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc-----cccCcchHHHHHHH
Confidence                12333445679999999884 788888888889999999999999999999987432     36778899999999


Q ss_pred             CCCCHHHHHHHHhcC
Q psy12576        151 QSPDTQIRVAALQCL  165 (165)
Q Consensus       151 ~D~~p~VR~aA~~al  165 (165)
                      .|.+..||..|.++|
T Consensus       191 ~D~deiVRaSaVEtL  205 (253)
T 2db0_A          191 HDGDEIVRASAVEAL  205 (253)
T ss_dssp             GCSSHHHHHHHHHHH
T ss_pred             cCcchhhhHHHHHHH
Confidence            999999999987653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.57  E-value=0.00023  Score=63.71  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT  155 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p  155 (165)
                      -++..++|+|..+ .++++. +..+...+ ..+..+.|..|++|++++-..    .+. +.. ++.+++.++.+|+|++-
T Consensus       243 PVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL----~DL-L~~-Ld~Vv~aVL~GL~D~DD  313 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL----KEF-VED-KDGLCRKLVSLLSSPDE  313 (800)
T ss_dssp             HHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT----GGG-CCC-HHHHHHHHHHHTTCSSH
T ss_pred             ehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH----HHH-HHH-HHHHHHHHHhhcCCccc
Confidence            4478999999999 999965 44344444 577889999999999999998    332 222 99999999999999999


Q ss_pred             HHHHHHHhcC
Q psy12576        156 QIRVAALQCL  165 (165)
Q Consensus       156 ~VR~aA~~al  165 (165)
                      -||.+|..+|
T Consensus       314 DVRAVAAetL  323 (800)
T 3oc3_A          314 DIKLLSAELL  323 (800)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.50  E-value=0.00022  Score=61.75  Aligned_cols=105  Identities=12%  Similarity=0.076  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .++|.|+++|...       +......+..+|..++..-+.   .++ .-+++.+...+.+++...|+.|+++|+.|+.|
T Consensus       293 g~i~~Lv~lL~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~  365 (529)
T 3tpo_A          293 GVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG  365 (529)
T ss_dssp             TCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHhcCC-------ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence            5677788877642       245666677777766543221   111 22455566677899999999999999999998


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..++|.++..+.++++.||..|+.||
T Consensus       366 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  401 (529)
T 3tpo_A          366 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAI  401 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence            766432222346899999999999999999998764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.45  E-value=0.00017  Score=62.30  Aligned_cols=105  Identities=11%  Similarity=0.068  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .++|.|+++|...       +......+..+|..++..-+.   .++ .-+++.+...+.+++...|+.|+++|+.|+.|
T Consensus       274 g~i~~Lv~lL~~~-------~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~  346 (510)
T 3ul1_B          274 GVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG  346 (510)
T ss_dssp             TCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTS
T ss_pred             ccchhhhhhhcCC-------ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            4677788877643       245666666666666433221   111 23455566678899999999999999999988


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..++|.++..+.++++.||..|+.||
T Consensus       347 ~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL  382 (510)
T 3ul1_B          347 RQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI  382 (510)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            766433222356899999999999999999998764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.44  E-value=0.0024  Score=58.80  Aligned_cols=132  Identities=11%  Similarity=0.103  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcc--cHHHHHHHHhHHHHHHHHHhhccCCC-CCcCCCchhhHH
Q psy12576          5 IDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRT--SRFYAKGALQYLVPILTQKLTKQEEL-DDEDDWNPCKAA   81 (165)
Q Consensus         5 ~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~l~p~ll~~l~~~~ed-~dddew~~~~~a   81 (165)
                      ++.....+++||.+++|+-...           ++..++  .+..+...++.+++.+.+.+...+++ .|++.|+..+.+
T Consensus       141 ~~~~~~~~l~iL~~l~EEi~~~-----------~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~a  209 (971)
T 2x1g_F          141 ADVQLWIMLEVLTAIPEEAQVI-----------HTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRA  209 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-----------CCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhHHHHhcc-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHH
Confidence            4567889999999999752210           111121  23566677788888888888765433 233357888999


Q ss_pred             HHHHHHHHHH--cCCcchhhHHHHHhhhc----------------ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHH
Q psy12576         82 GVCLMLLSSC--CEEDMVPHILPFVNANI----------------EHADWRHRDAALMSFGAILVRPSFIITISERNFIM  143 (165)
Q Consensus        82 ~~~Ld~la~~--~~~~i~~~vl~~i~~~l----------------~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il  143 (165)
                      ..|+......  +|..+.+.+++++-. +                .+++...|++|+-+|+.|+++.........+..++
T Consensus       210 l~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~  288 (971)
T 2x1g_F          210 VKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLI  288 (971)
T ss_dssp             HHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHH
T ss_pred             HHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHH
Confidence            9999887773  663366677776655 4                12567899999999999999765332334455555


Q ss_pred             HHHHh
Q psy12576        144 EVVCE  148 (165)
Q Consensus       144 ~~v~~  148 (165)
                      |.++.
T Consensus       289 ~~~~~  293 (971)
T 2x1g_F          289 KMFLD  293 (971)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.42  E-value=0.00015  Score=68.39  Aligned_cols=109  Identities=11%  Similarity=0.023  Sum_probs=82.4

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhcc-----cCchHHHHHHHHHHH
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIE-----HADWRHRDAALMSFG  124 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~-----~~dw~~R~Aa~~Alg  124 (165)
                      .+++.+++.+.++-... +.+|....|+.-|+..++..+.+    ..+|.++|++-+...     ++..+.|...++.+|
T Consensus       447 ~~~~~~~~~l~~~l~~~-~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG  525 (1023)
T 4hat_C          447 DTEEIMISKLARQIDGS-EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG  525 (1023)
T ss_dssp             HHHHHHHHHHHHHHSST-TCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence            45555666655331111 13599999999999999987762    367788887776655     355667788889999


Q ss_pred             HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       125 ~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ...+-...  ...+++.+++.+.+++.|++|+|+.+||.|+
T Consensus       526 ry~~wl~~--~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al  564 (1023)
T 4hat_C          526 QYPRFLKA--HWNFLRTVILKLFEFMHETHEGVQDMACDTF  564 (1023)
T ss_dssp             TCHHHHHH--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHhc--cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            99987754  3457999999999999999999999999874

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=97.38  E-value=0.0013  Score=55.49  Aligned_cols=105  Identities=10%  Similarity=0.055  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      ..+|.|++.|...+      ++.....|..+|-.|+..-..  .+. .-.+|.+.+.+.+++...|+.|+.+|+.++.+.
T Consensus        59 ~~i~~Lv~~L~~~~------~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  132 (529)
T 1jdh_A           59 QMVSAIVRTMQNTN------DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ  132 (529)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHhcCC------CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            46778888886432      366788888888887653221  121 235566666788899999999999999999764


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      ......-.-..++|.+++.+.+++++||..|+.+
T Consensus       133 ~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~  166 (529)
T 1jdh_A          133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC  166 (529)
T ss_dssp             TTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred             cchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            4322111136789999999999999999988655

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=97.33  E-value=0.00038  Score=56.82  Aligned_cols=104  Identities=14%  Similarity=-0.018  Sum_probs=69.5

Q ss_pred             HHHHHHH-HhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcc-cCchHHHHHHHHHHHHhhc
Q psy12576         55 LVPILTQ-KLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIE-HADWRHRDAALMSFGAILV  128 (165)
Q Consensus        55 l~p~ll~-~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~E  128 (165)
                      .+|.++. +|...       +-.....|..+|..+++.-+.   .++. -.+|.+-..+. +++...|+.|+.||++++-
T Consensus        82 ~l~~Lv~~lL~s~-------~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~  154 (296)
T 1xqr_A           82 GMHLLVGRYLEAG-------AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR  154 (296)
T ss_dssp             HHHHHHHTTTTCS-------SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence            4566666 55431       236677888888888875442   2221 23333334444 3578899999999999998


Q ss_pred             CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |.......-.-...+|.+++.|++++++||..|+.+|
T Consensus       155 ~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aL  191 (296)
T 1xqr_A          155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLL  191 (296)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            8765321111236889999999999999999998764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=97.27  E-value=0.00035  Score=60.49  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILV  128 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E  128 (165)
                      ..++|.|..++...+       -.....|..+|..++..-.+.   ++ .-++|.+.+.+.++++..+..++.++|.|+.
T Consensus       250 ~~~lp~L~~LL~~~~-------~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  322 (529)
T 3tpo_A          250 EQILPTLVRLLHHND-------PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  322 (529)
T ss_dssp             HHHHHHHHHHTTSSC-------HHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHhcCCc-------HHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence            346777777775322       234566777787777543321   11 2355666677889999999999999999998


Q ss_pred             CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      |.......-.-..+++.+...+.++++.||..|+.+|
T Consensus       323 ~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL  359 (529)
T 3tpo_A          323 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM  359 (529)
T ss_dssp             SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred             cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            8765322222356778888899999999999998764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.27  E-value=0.00062  Score=62.36  Aligned_cols=88  Identities=16%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             CCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhh
Q psy12576         73 DDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEA  149 (165)
Q Consensus        73 dew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~  149 (165)
                      .+|....++..+|..++..+.+   ..++.+++.+. .+.+++++.|.+++.++|...+.....  ..+++.+++.++++
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~  537 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHA  537 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHH
Confidence            3699999999999999988773   46777777554 455578899999999999999755432  35799999999999


Q ss_pred             cCCCCHHHHHHHHhcC
Q psy12576        150 TQSPDTQIRVAALQCL  165 (165)
Q Consensus       150 l~D~~p~VR~aA~~al  165 (165)
                      +.|  |+||.+|+.+|
T Consensus       538 l~~--~~V~~~A~~al  551 (963)
T 2x19_B          538 LGN--PELSVSSVSTL  551 (963)
T ss_dssp             TTC--GGGHHHHHHHH
T ss_pred             hCC--chHHHHHHHHH
Confidence            977  89999998764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.25  E-value=0.00047  Score=64.70  Aligned_cols=90  Identities=7%  Similarity=-0.023  Sum_probs=76.5

Q ss_pred             CCchhhHHHHHHHHHHHHcCC---------cchhhHHHHHhhhcc-----cCchHHHHHHHHHHHHhhcCCcchhchHhH
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEE---------DMVPHILPFVNANIE-----HADWRHRDAALMSFGAILVRPSFIITISER  139 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~---------~i~~~vl~~i~~~l~-----~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l  139 (165)
                      +|....+|.-+|..+|..+.+         ..+|.+++++...+.     .+.++.|.+++..+|.-.+.....  ..++
T Consensus       456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l  533 (980)
T 3ibv_A          456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAI  533 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTH
T ss_pred             CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhH
Confidence            599999999999999998763         357778888877655     678999999999999999877653  3579


Q ss_pred             HHHHHHHHh--hcCCCCHHHHHHHHhcC
Q psy12576        140 NFIMEVVCE--ATQSPDTQIRVAALQCL  165 (165)
Q Consensus       140 ~~il~~v~~--~l~D~~p~VR~aA~~al  165 (165)
                      +.+++.++.  ++.||+++||.+|+.++
T Consensus       534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af  561 (980)
T 3ibv_A          534 PALIEYFVGPRGIHNTNERVRPRAWYLF  561 (980)
T ss_dssp             HHHHHHHTSTTTTTCCCTTTHHHHHHHH
T ss_pred             HHHHHHHhccccccCCChhHHHHHHHHH
Confidence            999999999  99999999999998763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.23  E-value=0.0019  Score=54.27  Aligned_cols=78  Identities=18%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      +.+|-.|+......+++.+.+.+.+.+.|.++..|++|+++..-+..-..+     ....+++.+-+.+.|.+|.|.++|
T Consensus       122 ~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-----~v~~~~~~l~~ll~d~n~~V~~~A  196 (355)
T 3tjz_B          122 GPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-----VVKRWVNEAQEAASSDNIMVQYHA  196 (355)
T ss_dssp             HHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-----HHHTTHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHHhcCCCccHHHHH
Confidence            345777777777778888888888888888888888888887766643322     244677777777778888888777


Q ss_pred             Hhc
Q psy12576        162 LQC  164 (165)
Q Consensus       162 ~~a  164 (165)
                      +.+
T Consensus       197 l~l  199 (355)
T 3tjz_B          197 LGL  199 (355)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=97.21  E-value=0.0022  Score=55.27  Aligned_cols=110  Identities=14%  Similarity=0.062  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--c--chhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--D--MVPHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~--i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..++.|+.+|...+.  +.-.....+.+..+|..++..-..  .  .+..++|.+...+.+++...|..|+.||+.++++
T Consensus       185 G~i~~Ll~lL~~~~~--~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~  262 (510)
T 3ul1_B          185 GAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG  262 (510)
T ss_dssp             TCHHHHHHHTCSSCG--GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             CChHHHHHHHHhccc--hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            456777777764321  000112234455555555543321  1  3456788888899999999999999999999998


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..+++.+++.+.++++.||..|+.+|
T Consensus       263 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          263 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            876432222356788999999999999999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.13  E-value=0.00032  Score=63.14  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=48.5

Q ss_pred             HHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHH-HHHHhhcCCCCHHHHHHHHhcC
Q psy12576        100 ILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIM-EVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       100 vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il-~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ++|.++ .++|+++..|..|+.||+.|+++.+...+. ..+.++ +.+-+.|.|+++.||.+|+.||
T Consensus        36 i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~-~~~~~v~~ll~~lL~D~~~~Vr~~A~gaL  100 (684)
T 4gmo_A           36 ILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLL-LREQVVHIVLTETLTDNNIDSRAAGWEIL  100 (684)
T ss_dssp             THHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHH-HHTTHHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred             HHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHH-HHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            445554 489999999999999999999977654332 234444 4556678999999999998764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.13  E-value=0.00077  Score=59.79  Aligned_cols=81  Identities=11%  Similarity=0.102  Sum_probs=62.1

Q ss_pred             CchhhHHHHHHHHHHHHcC-C-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCE-E-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS  152 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~-~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D  152 (165)
                      ....+.+.-.+   ...+. + ++...+.+.+.+-++|++...|-.|+.++|.|..   +    ...+.+++.|.+.+.|
T Consensus        84 ~~~Krl~Yl~~---~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~----~~~~~l~~~l~~~L~~  153 (618)
T 1w63_A           84 FTDKRIGYLGA---MLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS---S----EMCRDLAGEVEKLLKT  153 (618)
T ss_dssp             HHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---H----HHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHH---HHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---H----HHHHHHHHHHHHHHcC
Confidence            44455555333   33333 2 4566777888889999999999999999999982   2    2467889999999999


Q ss_pred             CCHHHHHHHHhcC
Q psy12576        153 PDTQIRVAALQCL  165 (165)
Q Consensus       153 ~~p~VR~aA~~al  165 (165)
                      ++|.||.+|+.|+
T Consensus       154 ~~~~VRk~A~~al  166 (618)
T 1w63_A          154 SNSYLRKKAALCA  166 (618)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998874

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=97.11  E-value=0.0023  Score=56.47  Aligned_cols=106  Identities=10%  Similarity=0.067  Sum_probs=74.8

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      ..++.|++.|...+      +......|..+|..|+..-..  .+. .-++|.+.+.+++++...|+.|+.+|+.++.+.
T Consensus        56 ~~i~~Lv~~L~~~~------~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~  129 (644)
T 2z6h_A           56 QMVSAIVRTMQNTN------DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ  129 (644)
T ss_dssp             HHHHHHHHHHHSCC------CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHhcCC------CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence            56788888887421      245677788888877653221  111 235566667788899999999999999999775


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ......-.-..++|.+++.+.++++++|.+|+.||
T Consensus       130 ~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L  164 (644)
T 2z6h_A          130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  164 (644)
T ss_dssp             TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence            44322212367899999999999999999886553

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.10  E-value=0.00037  Score=62.16  Aligned_cols=83  Identities=8%  Similarity=0.093  Sum_probs=62.8

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc--CC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT--QS  152 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l--~D  152 (165)
                      ....+.+.-++..++..-+ +++..+.+.+.+-++|+++..|-.|+-++|.|..       ....+.+++.|.+.+  .|
T Consensus        88 ~~~Krl~YL~l~~~~~~~~-e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~~l~~~v~~~l~~~d  159 (621)
T 2vgl_A           88 YTEKQIGYLFISVLVNSNS-ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAEAFAGEIPKILVAGD  159 (621)
T ss_dssp             HHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHHHHTTHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHccCCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHHHHHHHHHHHHhCCC
Confidence            3445555544444432222 4566677888889999999999999999999964       235788999999999  99


Q ss_pred             CCHHHHHHHHhcC
Q psy12576        153 PDTQIRVAALQCL  165 (165)
Q Consensus       153 ~~p~VR~aA~~al  165 (165)
                      ++|.||..|+.|+
T Consensus       160 ~~~~VRK~A~~al  172 (621)
T 2vgl_A          160 TMDSVKQSAALCL  172 (621)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998774

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.07  E-value=0.0016  Score=54.68  Aligned_cols=81  Identities=12%  Similarity=0.057  Sum_probs=68.7

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      -...+-..-.+..++.. ++.++ .+...+.+-++++++.+|=.|+-++|.|.+.-       .++.+.+.+-+.+.|.|
T Consensus        82 ~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-------m~~~l~~~lk~~L~d~~  152 (355)
T 3tjz_B           82 PTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDST-------MLQAIERYMKQAIVDKV  152 (355)
T ss_dssp             HHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-------THHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-------HHHHHHHHHHHHcCCCC
Confidence            56677777777777776 55565 88899999999999999999999999998632       47788899999999999


Q ss_pred             HHHHHHHHhc
Q psy12576        155 TQIRVAALQC  164 (165)
Q Consensus       155 p~VR~aA~~a  164 (165)
                      |-||.+|+-|
T Consensus       153 pyVRk~A~l~  162 (355)
T 3tjz_B          153 PSVSSSALVS  162 (355)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999866

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.07  E-value=0.00038  Score=62.05  Aligned_cols=80  Identities=9%  Similarity=0.010  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhc--ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANI--EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRV  159 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l--~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~  159 (165)
                      +-+|..|+......+.+.++|.|.+.+  .+.++..|+.|++|+.-+..-..+ ...  .+.+++.+.+.|.|++|.|+.
T Consensus       129 ~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~--~~~~~~~l~~lL~d~d~~V~~  205 (621)
T 2vgl_A          129 GLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVP--MGDWTSRVVHLLNDQHLGVVT  205 (621)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCC--CCSCHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcC--chhHHHHHHHHhCCCCccHHH
Confidence            345888888877779999999999999  899999999999999999973322 221  136788888899999999999


Q ss_pred             HHHhc
Q psy12576        160 AALQC  164 (165)
Q Consensus       160 aA~~a  164 (165)
                      +|+.+
T Consensus       206 ~a~~~  210 (621)
T 2vgl_A          206 AATSL  210 (621)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=97.06  E-value=0.0039  Score=57.55  Aligned_cols=105  Identities=11%  Similarity=-0.032  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-Ccch-----hhHHHHHhhhcccC-chHHHHHHHHHHHHh
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-EDMV-----PHILPFVNANIEHA-DWRHRDAALMSFGAI  126 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~i~-----~~vl~~i~~~l~~~-dw~~R~Aa~~Alg~i  126 (165)
                      ..+|.|+.+|...+       ....+.|+.+|..|+.... +.++     ..++|.+...+.+. +-..+..|++||+.+
T Consensus       536 Gaip~Lv~LL~s~~-------~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NL  608 (810)
T 3now_A          536 GGVKALLRMALEGT-------EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL  608 (810)
T ss_dssp             THHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHccCC-------HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence            46777777776422       2457888899999876543 2211     12445555556544 445667899999999


Q ss_pred             hcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        127 LVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       127 ~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.+..+....-.-...+|.+.+.+.++++.||.+|+.||
T Consensus       609 a~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L  647 (810)
T 3now_A          609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL  647 (810)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            998754221112246788888889999999999998764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.06  E-value=0.00087  Score=62.63  Aligned_cols=90  Identities=8%  Similarity=0.001  Sum_probs=67.8

Q ss_pred             CCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhcc-----cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIE-----HADWRHRDAALMSFGAILVRPSFIITISERNFIME  144 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~-----~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~  144 (165)
                      +|....++.-++..+|..+++    ..++.+++++.....     ++.+..|..++.++|...+....  ...+++.+++
T Consensus       466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~  543 (1049)
T 3m1i_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVIL  543 (1049)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence            598889999999888776663    247777877755222     24455555688999988865443  2457999999


Q ss_pred             HHHhhcCCCCHHHHHHHHhcC
Q psy12576        145 VVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       145 ~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .+++++.|++++||.+|+.++
T Consensus       544 ~ll~~l~~~~~~V~~~A~~al  564 (1049)
T 3m1i_C          544 KLFEFMHETHEGVQDMACDTF  564 (1049)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHH
Confidence            999999999999999999864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.99  E-value=0.001  Score=60.68  Aligned_cols=105  Identities=13%  Similarity=-0.013  Sum_probs=73.4

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF  132 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~  132 (165)
                      ..+|.|+.++...+       ....+.+..+|..|+...+. .....++|.+.+.+.+.+|..|+.|+.+|+.++.+...
T Consensus       360 g~l~~Ll~lL~~~~-------~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~  432 (780)
T 2z6g_A          360 GGMQALGLHLTDPS-------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  432 (780)
T ss_dssp             THHHHHGGGTTCSC-------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred             chHHHHHHHHcCCc-------hHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence            45677777775321       23455667777777766653 35677888888899999999999999999999988654


Q ss_pred             hhchHhHHHHHHHHHhhcCC-CC-HHHHHHHHhcC
Q psy12576        133 IITISERNFIMEVVCEATQS-PD-TQIRVAALQCL  165 (165)
Q Consensus       133 ~~~~~~l~~il~~v~~~l~D-~~-p~VR~aA~~al  165 (165)
                      ....-.-...++.+++.+.+ ++ +.||..|+.+|
T Consensus       433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            32211224567788888765 33 48988887654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=96.90  E-value=0.005  Score=56.03  Aligned_cols=107  Identities=10%  Similarity=0.070  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      +.+++.|++.|...+      +......|..+|-.|+..-..  .+. .-++|.+.+.+++++...|+.|+.+|+.++.+
T Consensus       191 ~~~i~~Lv~~L~~~~------d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~  264 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTN------DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH  264 (780)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHcCCC------CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            357888888887431      246678888888888754221  121 23566666777888999999999999999987


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..+++.+++.+.+++++||..|+.||
T Consensus       265 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL  300 (780)
T 2z6g_A          265 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL  300 (780)
T ss_dssp             STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            554322111257899999999999999999887653

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=96.78  E-value=0.0046  Score=57.13  Aligned_cols=133  Identities=11%  Similarity=-0.025  Sum_probs=91.9

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHH
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAG   82 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~   82 (165)
                      |+++.+..+|.|.+...|..+                   .++.++.+.  . +|.|..++...+       ...+.-|.
T Consensus       301 s~~~~~q~~A~~al~~aa~~~-------------------~~R~~I~~~--g-v~~L~~Ll~s~~-------~~vr~~Al  351 (810)
T 3now_A          301 TDDELQQRVACECLIAASSKK-------------------DKAKALCEQ--G-VDILKRLYHSKN-------DGIRVRAL  351 (810)
T ss_dssp             SSCHHHHHHHHHHHHHHTTSH-------------------HHHHTTHHH--H-HHHHHHHTTCSC-------HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCc-------------------HHHHHHHHc--C-cHHHHHHHcCCC-------HHHHHHHH
Confidence            456666667777777766531                   123344442  2 377777775321       24466778


Q ss_pred             HHHHHHHHHcC-C---cc-----hhhHHHHHhhhcccC--chHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576         83 VCLMLLSSCCE-E---DM-----VPHILPFVNANIEHA--DWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ  151 (165)
Q Consensus        83 ~~Ld~la~~~~-~---~i-----~~~vl~~i~~~l~~~--dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~  151 (165)
                      .+|-.++...+ +   .+     ++.+++.+...+.++  |...|+.|+.+|+.+..+......-..-..++|.+++.+.
T Consensus       352 ~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~  431 (810)
T 3now_A          352 VGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR  431 (810)
T ss_dssp             HHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC
Confidence            88999986443 1   22     456778888888888  8999999999999999988764322223578999999999


Q ss_pred             CCCHHHHHHHHhc
Q psy12576        152 SPDTQIRVAALQC  164 (165)
Q Consensus       152 D~~p~VR~aA~~a  164 (165)
                      ++++.+++.|..+
T Consensus       432 s~d~~i~~~al~~  444 (810)
T 3now_A          432 GGNQSCLYGVVTT  444 (810)
T ss_dssp             TTCGGGHHHHHHH
T ss_pred             CCChHHHHHHHHH
Confidence            9999999998754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=96.75  E-value=0.006  Score=50.81  Aligned_cols=110  Identities=13%  Similarity=0.024  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHH---cCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHH
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSC---CEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGA  125 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~---~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~  125 (165)
                      ...+|.|+++|...++   .......+.|..+|..|+.+   .++   .+. .-.+|.+.+.+.+.+...++.|+.+|+.
T Consensus       213 ~Gai~~Lv~lL~~~~~---~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n  289 (354)
T 3nmw_A          213 DGALAFLVGTLTYRSQ---TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN  289 (354)
T ss_dssp             TTHHHHHHHHTTCCCS---SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhccCCC---cccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            3567888888864321   11135677788889999873   222   122 2256667777888999999999999999


Q ss_pred             hhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        126 ILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       126 i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ++.|..+....-.-...+|.+++.+.++++++|..|+.+|
T Consensus       290 La~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL  329 (354)
T 3nmw_A          290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL  329 (354)
T ss_dssp             HTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            9977655322222356799999999999999999887664

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=96.68  E-value=0.00019  Score=67.67  Aligned_cols=87  Identities=18%  Similarity=0.151  Sum_probs=61.5

Q ss_pred             hhhH-HHHHHHHHHHHcC-CcchhhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcch-hchHhHHHHHHHHHhhcCC
Q psy12576         77 PCKA-AGVCLMLLSSCCE-EDMVPHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFI-ITISERNFIMEVVCEATQS  152 (165)
Q Consensus        77 ~~~~-a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~-~~~~~l~~il~~v~~~l~D  152 (165)
                      ..+. |..|+..||+..- ...++.++..+.+... +++| .|.+.+--+-++.- -.-. ....+...|+.+|+..|.|
T Consensus       777 L~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f-~n~f~l~~~~~~~i~~~v~~~L~D  854 (997)
T 1vsy_5          777 LASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLS-AELLQLTEEEKNKILEFVVSNLYN  854 (997)
T ss_dssp             HTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHH-HHTTTSCTTHHHHTHHHHTTTTTC
T ss_pred             HHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHhcC
Confidence            4455 6678988887654 5677888888877776 7899 88777554433332 1111 2233567899999999999


Q ss_pred             CC-HHHHHHHHhcC
Q psy12576        153 PD-TQIRVAALQCL  165 (165)
Q Consensus       153 ~~-p~VR~aA~~al  165 (165)
                      ++ ..||..|..+|
T Consensus       855 ~q~~EVRe~Aa~tL  868 (997)
T 1vsy_5          855 EQFVEVRVRAASIL  868 (997)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHH
Confidence            99 99999998764

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.019  Score=52.77  Aligned_cols=108  Identities=7%  Similarity=0.092  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHc------CC----cchhhHHHHHhhhcccC-------c---h
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCC------EE----DMVPHILPFVNANIEHA-------D---W  113 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~------~~----~i~~~vl~~i~~~l~~~-------d---w  113 (165)
                      ..+|.|++.+....+..    -..+..|+.+|.+|+...      +.    ..+|+++..+...-...       +   -
T Consensus       498 Gal~~LL~lL~s~~~~~----~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~  573 (778)
T 3opb_A          498 GAVKIILEYLANKQDIG----EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKL  573 (778)
T ss_dssp             THHHHHHHHTTCC---C----CHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCH
T ss_pred             CCHHHHHHHHhcCCCcc----hHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccH
Confidence            45777777777543110    125678889999987543      32    12344444433110111       1   1


Q ss_pred             HHHHHHHHHHHHhhcCCc---chhchHhHH--HHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        114 RHRDAALMSFGAILVRPS---FIITISERN--FIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       114 ~~R~Aa~~Alg~i~EG~~---~~~~~~~l~--~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ..+.-|++||+.++.+..   +..+...+.  ..+|.+.+.+.+.++.||.||+.++
T Consensus       574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI  630 (778)
T 3opb_A          574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI  630 (778)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            458899999999999873   223333343  5899999999999999999998864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=96.48  E-value=0.0086  Score=50.94  Aligned_cols=103  Identities=11%  Similarity=0.005  Sum_probs=72.5

Q ss_pred             HHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576         56 VPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRPS  131 (165)
Q Consensus        56 ~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~  131 (165)
                      +|.++.+|...+       ......|+.+|..|+..-++   .+. .-.+|.+.+.+.+++...++.|..||+.++-+-.
T Consensus         4 l~~lv~~L~s~~-------~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~   76 (457)
T 1xm9_A            4 IPKAVQYLSSQD-------EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRST   76 (457)
T ss_dssp             HHHHHHHHHSSC-------THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence            567777777532       45677788888888743332   222 2356777778888999999999999999998633


Q ss_pred             chhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576        132 FIITISERNFIMEVVCEATQ-SPDTQIRVAALQCL  165 (165)
Q Consensus       132 ~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al  165 (165)
                      +....---...+|.+++.|. ++++.||..|..+|
T Consensus        77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL  111 (457)
T 1xm9_A           77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLL  111 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            32211112466889999998 89999999987654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=96.46  E-value=0.0049  Score=51.96  Aligned_cols=90  Identities=11%  Similarity=-0.025  Sum_probs=64.1

Q ss_pred             chhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC--
Q psy12576         76 NPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS--  152 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D--  152 (165)
                      ...+.+..+|..|+...+. .....++|.+.+.+.++++..|..|+.+|+.++.+..+....-.-...++.+++.+.+  
T Consensus       242 ~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~  321 (529)
T 1jdh_A          242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG  321 (529)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence            4556677788888876653 3455677778788889999999999999999988654322111123467777887764  


Q ss_pred             CCHHHHHHHHhcC
Q psy12576        153 PDTQIRVAALQCL  165 (165)
Q Consensus       153 ~~p~VR~aA~~al  165 (165)
                      .++.||..|+.+|
T Consensus       322 ~~~~v~~~a~~~L  334 (529)
T 1jdh_A          322 DREDITEPAICAL  334 (529)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4489999888764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=96.42  E-value=0.014  Score=50.41  Aligned_cols=109  Identities=13%  Similarity=0.016  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCC-chhhHHHHHHHHHHHH---cCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHH
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDW-NPCKAAGVCLMLLSSC---CEE---DMV-PHILPFVNANIEHADWRHRDAALMSFG  124 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew-~~~~~a~~~Ld~la~~---~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg  124 (165)
                      ...+|.|.++|...++    ..| ...+.|..+|..|+.+   .++   .+. .-.+|.+.+.+.+.+...++.|+.||+
T Consensus       329 ~Gal~~Lv~LL~~~~~----~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~  404 (458)
T 3nmz_A          329 DGALAFLVGTLTYRSQ----TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW  404 (458)
T ss_dssp             TTHHHHHHHHTTCCCS----SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHhcCCCC----cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence            3567888888864321    123 4677788889999863   222   122 235667777888899999999999999


Q ss_pred             HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       125 ~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .++-|..+....-.-...+|.+++.+.+++++||..|+.+|
T Consensus       405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL  445 (458)
T 3nmz_A          405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL  445 (458)
T ss_dssp             HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99977555322222357799999999999999999998764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.34  E-value=0.012  Score=46.51  Aligned_cols=105  Identities=6%  Similarity=-0.144  Sum_probs=72.0

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      .+|.++++|...+     .+-.....|+.+|..++..-++   .|.. -.+|.+...+.+++...|+.|+.||+.++-|.
T Consensus         9 ~i~~lV~lL~s~~-----~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~   83 (233)
T 3tt9_A            9 TLERAVSMLEADH-----MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED   83 (233)
T ss_dssp             CHHHHHHTCCSSC-----CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCCC-----chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence            3677777776432     1113445666788888765442   2332 25677777788899999999999999999876


Q ss_pred             cchhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhc
Q psy12576        131 SFIITISERNFIMEVVCEATQ-SPDTQIRVAALQC  164 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~a  164 (165)
                      .+....---...+|.+++.|. .+++.+|..|.-+
T Consensus        84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~a  118 (233)
T 3tt9_A           84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGL  118 (233)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHH
Confidence            553222223567888999997 5899999988643

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.31  E-value=0.0028  Score=50.49  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=31.9

Q ss_pred             HHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        103 FVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       103 ~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .+...+.+++|+.|+++..++|                  .+.+ ..|+|+++.||.+|...|
T Consensus       198 ~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L-~~L~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          198 DLLELLHDPDWTVRLAAVEHAS------------------LEAL-RELDEPDPEVRLAIAGRL  241 (244)
T ss_dssp             GGGGGGGCSSHHHHHHHHHHSC------------------HHHH-HHCCCCCHHHHHHHHCCC
T ss_pred             HHHHHHcCCCHHHHHHHHHcCC------------------HHHH-HHccCCCHHHHHHHHHHh
Confidence            3455577888888888888765                  1333 334999999999998765

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=96.23  E-value=0.0069  Score=53.39  Aligned_cols=104  Identities=13%  Similarity=-0.015  Sum_probs=72.0

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcch
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFI  133 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~  133 (165)
                      .+|.|++++...       +-.....+..+|..|+...++ ..+..++|.+...+.+.++..|+.|..+|+.++.+....
T Consensus       225 ~l~~L~~ll~~~-------~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~  297 (644)
T 2z6h_A          225 GMQALGLHLTDP-------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN  297 (644)
T ss_dssp             HHHHHHTTTTCS-------CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHhcC-------CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            455666655421       134566777788888776553 345677888888889999999999999999999875442


Q ss_pred             hchHhHHHHHHHHHhhcCC-C-CHHHHHHHHhcC
Q psy12576        134 ITISERNFIMEVVCEATQS-P-DTQIRVAALQCL  165 (165)
Q Consensus       134 ~~~~~l~~il~~v~~~l~D-~-~p~VR~aA~~al  165 (165)
                      ...-.-...++.+++.+.+ + ++.||..|+.+|
T Consensus       298 ~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            2111124477888888875 3 379999887664

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.22  E-value=0.026  Score=44.98  Aligned_cols=74  Identities=18%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhh-hcccCchHHHHHHHHHHHHhhc--CCcchhchHhHHHHHHHHHhhcCC
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNA-NIEHADWRHRDAALMSFGAILV--RPSFIITISERNFIMEVVCEATQS  152 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~-~l~~~dw~~R~Aa~~Alg~i~E--G~~~~~~~~~l~~il~~v~~~l~D  152 (165)
                      +.+..|..   .|++. .  -.+.+++++.+ ...++.|+.|+.+-++|+-++.  |+.         ..++.+..-++|
T Consensus        86 eVR~~Av~---lLg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---------~~l~~~~~W~~d  150 (240)
T 3l9t_A           86 QVRMYAVF---LFGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---------KALPIIDEWLKS  150 (240)
T ss_dssp             HHHHHHHH---HHHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---------TTHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHhcC
Confidence            55555554   34444 2  34778888887 6668889999999889987774  332         135566667778


Q ss_pred             CCHHHHHHHHhc
Q psy12576        153 PDTQIRVAALQC  164 (165)
Q Consensus       153 ~~p~VR~aA~~a  164 (165)
                      +|+.||.+|...
T Consensus       151 ~n~~VRR~Ase~  162 (240)
T 3l9t_A          151 SNLHTRRAATEG  162 (240)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHh
Confidence            888888888764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=96.22  E-value=0.03  Score=46.51  Aligned_cols=106  Identities=15%  Similarity=0.055  Sum_probs=70.2

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C--cch--hhHHHHHhhhcccCch----HHHHHHHHHHH
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E--DMV--PHILPFVNANIEHADW----RHRDAALMSFG  124 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~--~i~--~~vl~~i~~~l~~~dw----~~R~Aa~~Alg  124 (165)
                      ..+|.|+++|.+..      +....+.|..+|-.||...+ .  .+.  .-.+|.+.+.+.+.+.    ..++.|..+|.
T Consensus       170 G~Ip~Lv~lL~~~~------~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~  243 (354)
T 3nmw_A          170 GSVKALMECALEVK------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR  243 (354)
T ss_dssp             THHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCC------CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHH
Confidence            45677777655322      13556777788888887543 2  232  3466666666665432    57888999999


Q ss_pred             Hhhc---CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        125 AILV---RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       125 ~i~E---G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .++-   |..+....-.-...+|.+++.|.+++..||..|+-+|
T Consensus       244 nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL  287 (354)
T 3nmw_A          244 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  287 (354)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence            9886   5555322111245789999999999999999987654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.041  Score=43.41  Aligned_cols=82  Identities=12%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHHHHcCCc---------chhhHHHHHh-hhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHH
Q psy12576         78 CKAAGVCLMLLSSCCEED---------MVPHILPFVN-ANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVC  147 (165)
Q Consensus        78 ~~~a~~~Ld~la~~~~~~---------i~~~vl~~i~-~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~  147 (165)
                      ...|..||..++..++..         .+..++|.+- +.+.+...+.|.+|+-++-.+++.+..      ...+++.++
T Consensus        72 ~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~------~~~~~e~l~  145 (278)
T 4ffb_C           72 QEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS------ITQSVELVI  145 (278)
T ss_dssp             HHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS------SHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc------HHHHHHHHH
Confidence            455667777777766521         3455666554 458999999999999999888876643      445678889


Q ss_pred             hhcCCCCHHHHHHHHhcC
Q psy12576        148 EATQSPDTQIRVAALQCL  165 (165)
Q Consensus       148 ~~l~D~~p~VR~aA~~al  165 (165)
                      .++++.+|+||.+++..|
T Consensus       146 ~~l~~Knpkv~~~~l~~l  163 (278)
T 4ffb_C          146 PFFEKKLPKLIAAAANCV  163 (278)
T ss_dssp             GGGGCSCHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHH
Confidence            999999999999987653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.17  E-value=0.018  Score=54.05  Aligned_cols=77  Identities=19%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             hhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCH
Q psy12576         77 PCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDT  155 (165)
Q Consensus        77 ~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p  155 (165)
                      .+++|..+|..++  .|+ +.+|.++.   -...+.||..|++|.+|+|-+.-|-..       +.++..+.+.+.|++.
T Consensus       594 VRraAViaLGlI~--~g~~e~v~rlv~---~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~  661 (963)
T 4ady_A          594 VRRAAVIALGFVL--LRDYTTVPRIVQ---LLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVD  661 (963)
T ss_dssp             HHHHHHHHHHHHT--SSSCSSHHHHTT---TGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHhhc--cCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCH
Confidence            5555554444432  332 34444443   344578999999999999999866543       3445666666789999


Q ss_pred             HHHHHHHhcC
Q psy12576        156 QIRVAALQCL  165 (165)
Q Consensus       156 ~VR~aA~~al  165 (165)
                      .||.+|+.+|
T Consensus       662 ~Vrq~Ai~AL  671 (963)
T 4ady_A          662 FVRQAAMIAL  671 (963)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=95.95  E-value=0.097  Score=45.10  Aligned_cols=106  Identities=16%  Similarity=0.061  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch--hhHHHHHhhhcccCc---h-HHHHHHHHHHH
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV--PHILPFVNANIEHAD---W-RHRDAALMSFG  124 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~--~~vl~~i~~~l~~~d---w-~~R~Aa~~Alg  124 (165)
                      ..+|.|+++|....      +....+.|..+|-.|+...++   .+.  .-.+|.+.+.+.+.+   | ..++.|..+|.
T Consensus       286 GaI~~LV~lLl~s~------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~  359 (458)
T 3nmz_A          286 GSVKALMECALEVK------KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR  359 (458)
T ss_dssp             THHHHHHHHHTTCC------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCC------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            45777777765432      235667788889999885532   232  345666666665443   2 47888999999


Q ss_pred             Hhhc---CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        125 AILV---RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       125 ~i~E---G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .++-   |..+....-.-...+|.+++.|.+++..||..|+.+|
T Consensus       360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL  403 (458)
T 3nmz_A          360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  403 (458)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred             HHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence            9886   5555322111246789999999999999999987654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=95.52  E-value=0.014  Score=55.40  Aligned_cols=109  Identities=14%  Similarity=0.053  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhcccC---chHHHHHH--HHHHH
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIEHA---DWRHRDAA--LMSFG  124 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~~~---dw~~R~Aa--~~Alg  124 (165)
                      .....+++.+.++-.. +.-.|....++.=++..+|.+..+    ..+|.+++++-....++   |-+.+.|+  ++.+|
T Consensus       473 ~~~~i~~~~l~~~~~~-~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlg  551 (1073)
T 3gjx_A          473 DTEIIMTKKLQNQVNG-TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVG  551 (1073)
T ss_dssp             HHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHh
Confidence            4556666666643111 122488889999999999877762    57888888887655443   34444444  35888


Q ss_pred             HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        125 AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       125 ~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .-.+....+  .++++.++..+++.+.++++.|+.||+.|+
T Consensus       552 rY~~wl~~h--~~~L~~vl~~L~~~m~~~~~~vq~aA~~af  590 (1073)
T 3gjx_A          552 QYPRFLRAH--WKFLKTVVNKLFEFMHETHDGVQDMACDTF  590 (1073)
T ss_dssp             HCHHHHHHC--HHHHHHHHHHHHHHTTCCSTTHHHHHHHHH
T ss_pred             hhHHHHHhC--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            877766543  457999999999999999999999999874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=95.47  E-value=0.097  Score=41.96  Aligned_cols=128  Identities=14%  Similarity=0.123  Sum_probs=89.5

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      +++||.+++.|+.-..++-+.                .|.. ...|.     .+...+...+.+++      + -...-+
T Consensus        85 k~~dEkval~A~r~L~~LLe~----------------vpL~-~~~y~-----Kl~~aL~dlik~~~------~-il~~ea  135 (265)
T 3b2a_A           85 SQENEKVTIKALRALGYLVKD----------------VPMG-SKTFL-----KAAKTLVSLLESPD------D-MMRIET  135 (265)
T ss_dssp             CSTTHHHHHHHHHHHHHHHTT----------------CCBC-HHHHH-----HHHHHHHHHTTSCC------H-HHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHcC----------------CCCC-HHHHH-----HHHHHHHHHhcCCC------c-hHHHHH
Confidence            578999999999999999974                2221 12244     47777888887543      1 111222


Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      +..|+-+   -.-...+-+..++..-+.|.|.+.+-||+-+|-.|+-.-.+.   ..++.|+.-|-..++.++|-++.-|
T Consensus       136 ae~Lgkl---kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~---~i~~~I~~eI~elL~~eD~~l~e~a  209 (265)
T 3b2a_A          136 IDVLSKL---QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS---GHLTLILDEIPSLLQNDNEFIVELA  209 (265)
T ss_dssp             HHHHHHC---CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC---CCGGGTTTTHHHHHTCSCHHHHHHH
T ss_pred             HHHhCcC---CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH---HHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            3333333   223567889999999999999999999999999998655442   2466666777777888899999988


Q ss_pred             Hhc
Q psy12576        162 LQC  164 (165)
Q Consensus       162 ~~a  164 (165)
                      +.+
T Consensus       210 Ld~  212 (265)
T 3b2a_A          210 LDV  212 (265)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=94.83  E-value=0.16  Score=39.74  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             cCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576         72 EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ  151 (165)
Q Consensus        72 ddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~  151 (165)
                      ||-|++.+.|...|..++...|+-+-|.+-.++.-.-.|+--..-.+---+||.++.     ++...+..++|++.....
T Consensus        43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-----i~Pe~v~~vVp~lfanyr  117 (253)
T 2db0_A           43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-----EKPELVKSMIPVLFANYR  117 (253)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHSC
T ss_pred             cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-----hCHHHHHhhHHHHHHHHh
Confidence            357999999999999999988864333333333322233333333444456666653     233345555666555554


Q ss_pred             CCCHHHH
Q psy12576        152 SPDTQIR  158 (165)
Q Consensus       152 D~~p~VR  158 (165)
                      =.+|+.|
T Consensus       118 igd~kik  124 (253)
T 2db0_A          118 IGDEKTK  124 (253)
T ss_dssp             CCSHHHH
T ss_pred             cCCccce
Confidence            3344444

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=94.55  E-value=0.071  Score=47.46  Aligned_cols=104  Identities=12%  Similarity=-0.009  Sum_probs=69.8

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      -+|.|+++|...+       -.....|+.+|..|+..-.+   .|.. -.+|.+...|.+++...|+.|+.||+.|+-|.
T Consensus        49 ~i~~LV~~L~s~~-------~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           49 ELPEVIAMLGFRL-------DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CHHHHHHHTTCSC-------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred             cHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence            4677778776422       23455666778877753321   2332 25677777888999999999999999999874


Q ss_pred             cc-hhchHhHHHHHHHHHhhcCC-CCHHHHHHHHhcC
Q psy12576        131 SF-IITISERNFIMEVVCEATQS-PDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~-~~~~~~l~~il~~v~~~l~D-~~p~VR~aA~~al  165 (165)
                      +. ....---...+|.+++.|.+ +++.+|..|..||
T Consensus       122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL  158 (584)
T 3l6x_A          122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTL  158 (584)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            33 22211234678888888885 6788888876543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=94.43  E-value=0.062  Score=45.59  Aligned_cols=65  Identities=11%  Similarity=0.025  Sum_probs=50.3

Q ss_pred             HHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        101 LPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       101 l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +|.+...+.++++..|..|..+|+.++.+-......-.-...+|.+++.|.++++.||..|+.+|
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL   68 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGAL   68 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            45555677788999999999999999976544221223467799999999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.15  E-value=0.16  Score=47.93  Aligned_cols=98  Identities=12%  Similarity=0.232  Sum_probs=77.3

Q ss_pred             HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---chhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MVPHILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      +...++|.|++.|....      .|....+|..+|+.|+...++.   -+|.++|.+.+.+-+.-....+||.-++-.++
T Consensus       130 a~~~~~~~~~~~~~~~~------kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          130 AIKALLPHLTNAIVETN------KWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             GHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhcccc------chHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence            44578888888886432      4999999999999999988854   57999999999999999999999999998887


Q ss_pred             cCCcchhchHhHHHHHHHHHhhcCCCCHHHHH
Q psy12576        128 VRPSFIITISERNFIMEVVCEATQSPDTQIRV  159 (165)
Q Consensus       128 EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~  159 (165)
                      .-.+..    -+..++|.+++.+.+|+. |-.
T Consensus       204 ~~~~n~----d~~~~~~~~~~~~~~p~~-~~~  230 (986)
T 2iw3_A          204 ETVDNK----DIERFIPSLIQCIADPTE-VPE  230 (986)
T ss_dssp             GGCCCT----TTGGGHHHHHHHHHCTTH-HHH
T ss_pred             hcCCCc----chhhhHHHHHHHhcChhh-hHH
Confidence            544432    366677888888888854 443

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=94.01  E-value=0.048  Score=51.43  Aligned_cols=89  Identities=11%  Similarity=0.003  Sum_probs=62.3

Q ss_pred             CchhhHHHHHHHHHHHHc-C-CcchhhHHHHHhhhcc-----------cCchHHHHHHHHHHHHhhcCCcchh-chHhHH
Q psy12576         75 WNPCKAAGVCLMLLSSCC-E-EDMVPHILPFVNANIE-----------HADWRHRDAALMSFGAILVRPSFII-TISERN  140 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~-~-~~i~~~vl~~i~~~l~-----------~~dw~~R~Aa~~Alg~i~EG~~~~~-~~~~l~  140 (165)
                      -.++..|+.+|.-|-.+. + ..+-+.+..|......           +.+-..|+||+++||++.....=.+ ..+.+|
T Consensus       858 ~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P  937 (997)
T 1vsy_5          858 VEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIP  937 (997)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccH
Confidence            358999999999888777 5 2233333333333322           1222689999999999998654322 256899


Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        141 FIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       141 ~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      .++..+++.+.||.| |+.++-.+
T Consensus       938 ~~l~~La~~~~~~~~-i~~tvk~t  960 (997)
T 1vsy_5          938 KNLSNLSSWARTSGM-TGNAAKNT  960 (997)
T ss_dssp             HHHHHHHTTSSSCSS-HHHHTHHH
T ss_pred             HHHHHHHHHhCCCCc-hHHHHHHH
Confidence            999999999999988 88776544

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=93.80  E-value=0.071  Score=41.95  Aligned_cols=67  Identities=10%  Similarity=-0.067  Sum_probs=49.7

Q ss_pred             hHHHHHhhhcccCch--HHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576         99 HILPFVNANIEHADW--RHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus        99 ~vl~~i~~~l~~~dw--~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ..+|.+.+.+++++.  ..+..|..++..++.+-.+....-.-...+|.+++.|.++++.||..|+.+|
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL   76 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGAL   76 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            345666678888887  7777788899999876544322212345679999999999999999998764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.39  E-value=0.23  Score=46.70  Aligned_cols=87  Identities=9%  Similarity=0.049  Sum_probs=63.3

Q ss_pred             CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCC-
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQS-  152 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D-  152 (165)
                      ++..+.+|.-+|..+.-.-|   .+.++..+.....+++...|++|+.|||-|+-|...... +.+..++..+.+...| 
T Consensus       625 d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~-~rva~~l~~L~~~~~dk  700 (963)
T 4ady_A          625 NAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN-PQVADINKNFLSVITNK  700 (963)
T ss_dssp             CHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC-TTHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc-hHHHHHHHHHHHHHhcc
Confidence            57888888877776653333   355566666677899999999999999999999887532 3466667766666655 


Q ss_pred             -CCHHHHHHHHhc
Q psy12576        153 -PDTQIRVAALQC  164 (165)
Q Consensus       153 -~~p~VR~aA~~a  164 (165)
                       .++.+|..|..|
T Consensus       701 ~~d~~~~fga~iA  713 (963)
T 4ady_A          701 HQEGLAKFGACVA  713 (963)
T ss_dssp             SSCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHH
Confidence             567788777644

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=93.30  E-value=0.34  Score=38.47  Aligned_cols=87  Identities=13%  Similarity=0.199  Sum_probs=62.3

Q ss_pred             cCCCchhhHHHHHHHHHHH-HcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576         72 EDDWNPCKAAGVCLMLLSS-CCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT  150 (165)
Q Consensus        72 ddew~~~~~a~~~Ld~la~-~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l  150 (165)
                      |+.|.+...++.+++.+.. .-++.    +++.+.....+++...|++|+-..---+...   ..+...+.++|.+-+..
T Consensus       115 D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~---~~k~dp~~ll~iL~~L~  187 (240)
T 3l9t_A          115 DNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP---YFKENPNEAIRRIADLK  187 (240)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHCTTT----THHHHHHHHHCSSHHHHHHHHHHTCSGGGST---TTTTCHHHHHHHHHTTT
T ss_pred             CCCccHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc---hhhcCHHHHHHHHHHhc
Confidence            3469999998889988886 44454    4455667788999889988877653211111   23345788999888888


Q ss_pred             CCCCHHHHHHHHhcC
Q psy12576        151 QSPDTQIRVAALQCL  165 (165)
Q Consensus       151 ~D~~p~VR~aA~~al  165 (165)
                      .|++.-||.+-.++|
T Consensus       188 ~D~s~yVrKSVan~L  202 (240)
T 3l9t_A          188 EDVSEYVRKSVGNAL  202 (240)
T ss_dssp             TCSCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHH
Confidence            899999999876653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=93.06  E-value=0.37  Score=42.80  Aligned_cols=105  Identities=15%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc--chhhHHHHHhhhcccC--------chHHHHHHHHHH
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED--MVPHILPFVNANIEHA--------DWRHRDAALMSF  123 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~--i~~~vl~~i~~~l~~~--------dw~~R~Aa~~Al  123 (165)
                      ..+|.|+++|...+       ....+.|..+|..|+..-..+  |-..++|-+...|.++        .-..+.+|+.++
T Consensus       355 ~glp~Lv~LL~s~~-------~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL  427 (584)
T 3l6x_A          355 KALSAIADLLTNEH-------ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI  427 (584)
T ss_dssp             HHHHHHHHGGGCSC-------HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCCC-------HHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence            55788888886432       367788899999999866532  3234556666666654        234678899999


Q ss_pred             HHhhcCCcchhchHhHHHHHHHHHhhcCCC--CHHHHHHHHhcC
Q psy12576        124 GAILVRPSFIITISERNFIMEVVCEATQSP--DTQIRVAALQCL  165 (165)
Q Consensus       124 g~i~EG~~~~~~~~~l~~il~~v~~~l~D~--~p~VR~aA~~al  165 (165)
                      +.|.-|-......-.-...+|.+++.+.+.  .++++.+|+.+|
T Consensus       428 ~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL  471 (584)
T 3l6x_A          428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVL  471 (584)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHH
Confidence            999877555332222356788888888875  889999887653

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=92.91  E-value=0.35  Score=44.45  Aligned_cols=112  Identities=13%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhhccCCCC-----CcCCCc--hhhHHHHHHHHHHHHcC-------Ccchh--hHHHHHhhhcccCchHHHH
Q psy12576         54 YLVPILTQKLTKQEELD-----DEDDWN--PCKAAGVCLMLLSSCCE-------EDMVP--HILPFVNANIEHADWRHRD  117 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~-----dddew~--~~~~a~~~Ld~la~~~~-------~~i~~--~vl~~i~~~l~~~dw~~R~  117 (165)
                      ..+|.|+++|....+.+     +++..+  ...-|..+|..||..=+       ..|+.  -.+|.+.+.+.+++...|+
T Consensus       545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vrr  624 (778)
T 3opb_A          545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR  624 (778)
T ss_dssp             THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHH
T ss_pred             cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHH
Confidence            34577888776211111     112222  24567788888887641       23665  3899999999999999999


Q ss_pred             HHHHHHHHhhcCCcc---hhchHhHHH---HHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        118 AALMSFGAILVRPSF---IITISERNF---IMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       118 Aa~~Alg~i~EG~~~---~~~~~~l~~---il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ||+.++++++..+..   .+....-+.   =++.++..+...++.+|.||.-+|
T Consensus       625 AA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagAL  678 (778)
T 3opb_A          625 STLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF  678 (778)
T ss_dssp             HHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            999999999975542   111111111   277788888999999999998653

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=92.64  E-value=1.8  Score=39.86  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             cHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC---CcchhhHHHHHhhhccc---CchHHHH
Q psy12576         44 SRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE---EDMVPHILPFVNANIEH---ADWRHRD  117 (165)
Q Consensus        44 ~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~---~~i~~~vl~~i~~~l~~---~dw~~R~  117 (165)
                      .....+.....+.|+++..|-..+       -.....+..||..||..-|   +.|+|.++..+...+.+   .+.+.-.
T Consensus       329 t~~~~~~fV~~l~p~~~~g~fSK~-------~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~  401 (799)
T 1vsy_4          329 TSFCHEEIVEIFLNIISLGSQNKN-------PDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRII  401 (799)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSS-------HHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCcCC-------cchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHH
Confidence            444555566778899888888654       3555778899999999999   89999999999999988   7777779


Q ss_pred             HHHHHHHHhhcCCcc-hhchHhHHHHHHHHHhhcCCCCH
Q psy12576        118 AALMSFGAILVRPSF-IITISERNFIMEVVCEATQSPDT  155 (165)
Q Consensus       118 Aa~~Alg~i~EG~~~-~~~~~~l~~il~~v~~~l~D~~p  155 (165)
                      +|+.+|..++--... .....|+..+|...++++.-++|
T Consensus       402 ~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~  440 (799)
T 1vsy_4          402 SSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDT  440 (799)
T ss_dssp             HHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCH
T ss_pred             HHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccH
Confidence            999999977732222 11234888999999999864444

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=92.34  E-value=0.11  Score=41.15  Aligned_cols=42  Identities=17%  Similarity=0.167  Sum_probs=27.1

Q ss_pred             hhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        106 ANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       106 ~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ..+.+++|..|.+++-.+       .           .+.+...+.|+++.||.++...+
T Consensus       177 ~ll~D~d~~VR~aaa~~l-------~-----------~~~L~~Ll~D~d~~VR~~aa~~l  218 (244)
T 1lrv_A          177 LMTQDPEPEVRRIVASRL-------R-----------GDDLLELLHDPDWTVRLAAVEHA  218 (244)
T ss_dssp             GSTTCSSHHHHHHHHHHC-------C-----------GGGGGGGGGCSSHHHHHHHHHHS
T ss_pred             HHHcCCCHHHHHHHHHhC-------C-----------HHHHHHHHcCCCHHHHHHHHHcC
Confidence            455677777776666542       0           13455567888999988887653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.86  E-value=0.61  Score=37.45  Aligned_cols=90  Identities=11%  Similarity=0.015  Sum_probs=60.9

Q ss_pred             CchhhHHHHHHHHHHHHcCCcc---hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc---hhchHhHHHHHHHHHh
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDM---VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF---IITISERNFIMEVVCE  148 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i---~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~---~~~~~~l~~il~~v~~  148 (165)
                      |..+.+|...|...-...++.+   +..++.++.-.+.+.+...-..++-.+..+.+-..+   .+...+...++|.++.
T Consensus        60 ~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lve  139 (266)
T 2of3_A           60 FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLL  139 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            7544444433333332233333   344688887777788888888888888887653332   2444467899999999


Q ss_pred             hcCCCCHHHHHHHHhc
Q psy12576        149 ATQSPDTQIRVAALQC  164 (165)
Q Consensus       149 ~l~D~~p~VR~aA~~a  164 (165)
                      .+.|+..+||.++-..
T Consensus       140 KlGd~k~~vR~~~r~i  155 (266)
T 2of3_A          140 KTGEAKDNMRTSVRDI  155 (266)
T ss_dssp             GGGCSSHHHHHHHHHH
T ss_pred             HhCCChHHHHHHHHHH
Confidence            9999999999998654

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=91.21  E-value=0.46  Score=36.53  Aligned_cols=78  Identities=13%  Similarity=0.172  Sum_probs=60.2

Q ss_pred             HHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccC--chHHHHHHHH
Q psy12576         47 YAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHA--DWRHRDAALM  121 (165)
Q Consensus        47 ~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~--dw~~R~Aa~~  121 (165)
                      ++..++..|+|.++.++....-..+    ..+..|+..|..+...+|+   .+-|.++....+.+.++  ....+++|+.
T Consensus        80 ~lepYlH~LipsvLtCll~k~l~~~----~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~  155 (196)
T 4atg_A           80 FIDPYLHQILPSLLTCVIGKSIVDD----DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALY  155 (196)
T ss_dssp             CCGGGHHHHHHHHHHHHHCTTCCCH----HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhcccCHH----HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            4666777899999999986432211    6899999999999999984   46677777777777654  5788899999


Q ss_pred             HHHHhhc
Q psy12576        122 SFGAILV  128 (165)
Q Consensus       122 Alg~i~E  128 (165)
                      +|++++.
T Consensus       156 GL~~lG~  162 (196)
T 4atg_A          156 CLSILSK  162 (196)
T ss_dssp             HHHHHCH
T ss_pred             HHHHhHH
Confidence            9999875

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=90.55  E-value=0.22  Score=44.58  Aligned_cols=105  Identities=18%  Similarity=0.197  Sum_probs=62.1

Q ss_pred             HHHHHHHHH-hhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---------cchhhHHHHHhhh---cccCc--------
Q psy12576         54 YLVPILTQK-LTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---------DMVPHILPFVNAN---IEHAD--------  112 (165)
Q Consensus        54 ~l~p~ll~~-l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---------~i~~~vl~~i~~~---l~~~d--------  112 (165)
                      .+++.++.. |.+.       +-..+.+|..+|..|+..-|.         .|+++++.++.+.   +....        
T Consensus        75 ~~v~~ll~~lL~D~-------~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~  147 (684)
T 4gmo_A           75 QVVHIVLTETLTDN-------NIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLK  147 (684)
T ss_dssp             THHHHHHHTTTTCS-------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCH
T ss_pred             CCHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccH
Confidence            566655554 4321       236788899999999988762         2667766665432   21111        


Q ss_pred             ------hHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC--C-CCHHHHHHHHhcC
Q psy12576        113 ------WRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ--S-PDTQIRVAALQCL  165 (165)
Q Consensus       113 ------w~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~--D-~~p~VR~aA~~al  165 (165)
                            |..-.-.+-+|.+++||-.+....-.....++.++..|.  | -...|+.+|++||
T Consensus       148 ~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L  209 (684)
T 4gmo_A          148 AQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCL  209 (684)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                  223344667888899987763211112345555556553  2 2367999999885

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=88.27  E-value=1.1  Score=35.93  Aligned_cols=82  Identities=20%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP  153 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~  153 (165)
                      .|...++..     +++...+     .+..+.+.+.+.|...|..++.+++-+..+..+......++.+++.+++.+.++
T Consensus        18 sWkiK~a~e-----la~~~e~-----~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~   87 (265)
T 3b2a_A           18 SWQILDAVS-----LALEDKR-----ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQE   87 (265)
T ss_dssp             TTCHHHHHH-----HHHHCHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCST
T ss_pred             HhhHHHHHH-----HHHhchh-----HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcc
Confidence            388776654     2233332     344445566889999999999999999998877666668999999999999999


Q ss_pred             CHHHHHHHHhcC
Q psy12576        154 DTQIRVAALQCL  165 (165)
Q Consensus       154 ~p~VR~aA~~al  165 (165)
                      +-+|---|+.||
T Consensus        88 dEkval~A~r~L   99 (265)
T 3b2a_A           88 NEKVTIKALRAL   99 (265)
T ss_dssp             THHHHHHHHHHH
T ss_pred             chhHHHHHHHHH
Confidence            999998888774

>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17

Probab=87.59  E-value=1.3  Score=34.41  Aligned_cols=67  Identities=12%  Similarity=0.023  Sum_probs=48.9

Q ss_pred             hhHHHHHhhhcccCchHHHHHHHHHHHHh-hcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576         98 PHILPFVNANIEHADWRHRDAALMSFGAI-LVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus        98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i-~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      |...+++.+.+.|++-..|++|+...+.+ +.-.........++.++..+...+.|++..||.|.--+
T Consensus       107 ~~~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~  174 (235)
T 1t06_A          107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNF  174 (235)
T ss_dssp             SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHH
Confidence            55778888899999877788888843322 21222223456789999998889999999999998654

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=87.20  E-value=1.1  Score=42.65  Aligned_cols=89  Identities=11%  Similarity=0.036  Sum_probs=61.9

Q ss_pred             CCchhhHHHHHHHHHHHHc-----CC----cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHH
Q psy12576         74 DWNPCKAAGVCLMLLSSCC-----EE----DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIME  144 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~-----~~----~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~  144 (165)
                      .|....+....++.++..+     .+    .++|.+++.+.+. ...++..|...+.++|...+..+.  ...+++.+++
T Consensus       499 ~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~--~p~~L~~vL~  575 (1204)
T 3a6p_A          499 SFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTY--RPEFLPQVFS  575 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGT--CGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhc--CchHHHHHHH
Confidence            3555566666777776555     11    2456666654331 235888999999999999987664  3457899999


Q ss_pred             HHHhhcCCC------------CHHHHHHHHhcC
Q psy12576        145 VVCEATQSP------------DTQIRVAALQCL  165 (165)
Q Consensus       145 ~v~~~l~D~------------~p~VR~aA~~al  165 (165)
                      .++.++.|+            +.+||.+|+.|+
T Consensus       576 ~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al  608 (1204)
T 3a6p_A          576 KLFSSVTFETVEESKAPRTRAVRNVRRHACSSI  608 (1204)
T ss_dssp             HHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCcccccccccHHHHHHHHHHHHHH
Confidence            999888772            348999998764

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=82.39  E-value=2.1  Score=40.32  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=53.4

Q ss_pred             hhHHHHHHHHHHHH-------cCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576         78 CKAAGVCLMLLSSC-------CEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT  150 (165)
Q Consensus        78 ~~~a~~~Ld~la~~-------~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l  150 (165)
                      ...+.-++..|...       ++..+++.+..++.+.+.+.+-..+..++.|||+++-.-       -++.+++++ ++.
T Consensus       412 ~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~-------~l~~l~~~l-~~~  483 (1056)
T 1lsh_A          412 RKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN-------SIKKIQRFL-PGQ  483 (1056)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG-------GHHHHHTTS-TTS
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh-------HHHHHHHhh-cCc
Confidence            34455555555432       233568888888888888888888999999999998621       244444442 222


Q ss_pred             ----CCCCHHHHHHHHhcC
Q psy12576        151 ----QSPDTQIRVAALQCL  165 (165)
Q Consensus       151 ----~D~~p~VR~aA~~al  165 (165)
                          .+..+|||.+|+.||
T Consensus       484 ~~~~~~~~~rvr~aAi~AL  502 (1056)
T 1lsh_A          484 GKSLDEYSTRVQAEAIMAL  502 (1056)
T ss_dssp             SSCCCCSCHHHHHHHHHTT
T ss_pred             cccccccchHHHHHHHHHH
Confidence                244578999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	165
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-29
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	2e-22
d1wa5c_	959	a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc	1e-12
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-11
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-06
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.002
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.002
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.002
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.004

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 2e-29
 Identities = 105/165 (63%), Positives = 126/165 (76%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 326

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 327 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 386

Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           M+FG IL  P            M  + E  + P   +R  A   +
Sbjct: 387 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTV 431

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.0 bits (224), Expect = 2e-22
 Identities = 105/164 (64%), Positives = 125/164 (76%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKSDIDEVALQGIEFWSNV DEE+DLAIE SEAA+ GRPP  TS+FYAKGALQYLVPILT
Sbjct: 268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
           Q LTKQ+E DD+DDWNPCKAAGVCLMLL++CCE+D+VPH+LPF+  +I++ DWR+RDAA+
Sbjct: 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAV 387

Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC 164
           M+FG IL  P            M  + E  + P   +R  A   
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 6/139 (4%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
            +   D +  + + F + V+       I ++E+A                     +    
Sbjct: 301 NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDD 360

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWR 114
                + +L+  D     +A    L  L    E  +    L  +   ++        +W+
Sbjct: 361 PIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWK 420

Query: 115 HRDAALMSFGAILVRPSFI 133
            +D  +  F A+ +  +  
Sbjct: 421 FKDLYIYLFTALAINGNIT 439

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 5e-11
 Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 1   MKSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILT 60
           MKS  D+VA   +EFWS + +EE+D+A E ++           S  +A  +++ +VP L 
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQS----PLQSYNFALSSIKDVVPNLL 330

Query: 61  QKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAAL 120
             LT+Q E  ++DDWN   +AG CL L +  C   ++  +L FV  NI   +WR+R+AA+
Sbjct: 331 NLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAV 390

Query: 121 MSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
           M+FG+I+  P  +      +  +  +         Q++     C+
Sbjct: 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCI 435

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-06
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 3/96 (3%)

Query: 70  DDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVR 129
            D        A      L+    +E     I+P V A     ++ HR   L     +   
Sbjct: 451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510

Query: 130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
               IT      ++  V      P   +R    + L
Sbjct: 511 CGQDITTKH---MLPTVLRMAGDPVANVRFNVAKSL 543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 5/111 (4%)

Query: 55   LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWR 114
            L P +        +  +  +         CL  L+    E ++P +  ++          
Sbjct: 922  LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLI----SGSSY 977

Query: 115  HRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
             R + + +    +      I    +N  +    +  + PD  +R  AL   
Sbjct: 978  ARSSVVTAVKFTISDHPQPIDPLLKN-CIGDFLKTLEDPDLNVRRVALVTF 1027

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 2/119 (1%)

Query: 48  AKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILP-FVNA 106
                  LV      LT              K   + L  L   C   +   ++   ++ 
Sbjct: 159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE 218

Query: 107 NIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL 165
             ++         +    AI  R +          I+ +V +     D ++R   +Q  
Sbjct: 219 LSKNDSMSTTRTYIQCIAAI-SRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 276

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 8/68 (11%), Positives = 28/68 (41%)

Query: 98  PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI 157
            + +  +   +  +D   R  A       L + S  +       +++++ +  +  + ++
Sbjct: 2   SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV 61

Query: 158 RVAALQCL 165
           +  A++CL
Sbjct: 62  QNLAVKCL 69

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 79  KAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFII---- 134
              G+ +  ++S  E    P +LP + + ++  D+   + A  +   I    + I+    
Sbjct: 106 ATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 165

Query: 135 TISERNFIMEVVCEATQSPDTQIRVAALQC 164
                N ++    +  +    +IR  A+ C
Sbjct: 166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	165
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.84
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.83
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.01
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.74
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.73
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.68
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.61
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.3
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.17
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.13
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.02
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.02
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.0
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.99
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	97.89
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.52
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	97.49
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.35
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.33
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	97.13
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.12
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	97.05
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.82
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	95.55
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	94.6
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.29
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	92.39
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.74
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	89.6
d1t06a_	235	Hypothetical protein BC3264 {Bacillus cereus (stra	89.14
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	80.27

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-26  Score=185.92  Aligned_cols=163  Identities=63%  Similarity=1.030  Sum_probs=141.5

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHH
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAG   82 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~   82 (165)
                      +++++++.+|++||.++++.+........++......+....+++....++.++|.+.+.+...++.+++++|+++.+|+
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            56778999999999999998877665544443333333445556788888999999999998877777778899999999


Q ss_pred             HHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHH
Q psy12576         83 VCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAAL  162 (165)
Q Consensus        83 ~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~  162 (165)
                      .+++.++..+|+.++|.+++++.++++|++|+.|+||+++||+|++||.....+.+++.++|.+++.++||+|+||++|+
T Consensus       349 ~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~  428 (458)
T d1ibrb_         349 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA  428 (458)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987666778999999999999999999999999


Q ss_pred             hcC
Q psy12576        163 QCL  165 (165)
Q Consensus       163 ~al  165 (165)
                      .||
T Consensus       429 ~~l  431 (458)
T d1ibrb_         429 WTV  431 (458)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.1e-22  Score=172.10  Aligned_cols=164  Identities=63%  Similarity=1.030  Sum_probs=148.0

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      ++++++++.++++||.++|+.+..+..........+..+...++++.+++.+.++|.+.+.+...++++++++|+++++|
T Consensus       269 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  348 (876)
T d1qgra_         269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHH
Confidence            45678899999999999999998888776666555655666667788889999999999999988888788899999999


Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      ..+|..++..+|+.+++.+++++.+++.+++|+.|+|+++++|++++|+.....+.+++.+++.+++.+.|++|+||.+|
T Consensus       349 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a  428 (876)
T d1qgra_         349 GVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTA  428 (876)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999877778999999999999999999999999


Q ss_pred             HhcC
Q psy12576        162 LQCL  165 (165)
Q Consensus       162 ~~al  165 (165)
                      +.++
T Consensus       429 ~~~l  432 (876)
T d1qgra_         429 AWTV  432 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-22  Score=182.25  Aligned_cols=93  Identities=20%  Similarity=0.383  Sum_probs=86.9

Q ss_pred             cCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcC
Q psy12576         72 EDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQ  151 (165)
Q Consensus        72 ddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~  151 (165)
                      +++|+.+++|+.||+.++..+|+.++|.++|++.+++.+++|+.|+||++|||+|+|||.+.. .+++++++|.+++.++
T Consensus       368 ~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~-~~~l~~li~~l~~~l~  446 (888)
T d1qbkb_         368 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPHLIQCLS  446 (888)
T ss_dssp             TSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHH-TTTHHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHh-cccchhhhHHHHHhcc
Confidence            346999999999999999999999999999999999999999999999999999999998854 4689999999999999


Q ss_pred             CCCHHHHHHHHhcC
Q psy12576        152 SPDTQIRVAALQCL  165 (165)
Q Consensus       152 D~~p~VR~aA~~al  165 (165)
                      |++|.||.+|+.+|
T Consensus       447 d~~~~Vr~~a~~~l  460 (888)
T d1qbkb_         447 DKKALVRSITCWTL  460 (888)
T ss_dssp             SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.1e-20  Score=161.01  Aligned_cols=160  Identities=31%  Similarity=0.554  Sum_probs=138.7

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      ++.+++++.+++|||.++++.+..........   . .......++..+.++.++|.+++.+.+.++|+++++|+++.++
T Consensus       276 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (861)
T d2bpta1         276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQF---P-QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSA  351 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC---T-TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            56788999999999999999877655443321   1 1122334578888899999999999998888888899999999


Q ss_pred             HHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHH
Q psy12576         82 GVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAA  161 (165)
Q Consensus        82 ~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA  161 (165)
                      ..+|+.++..+|+.++|.+++++..++.+++|+.|++|++++|++++++.......+++.+++.+++.+.|+++.||++|
T Consensus       352 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a  431 (861)
T d2bpta1         352 GACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT  431 (861)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHH
Confidence            99999999999999999999999999999999999999999999999999877778999999999999999999999999


Q ss_pred             HhcC
Q psy12576        162 LQCL  165 (165)
Q Consensus       162 ~~al  165 (165)
                      +.++
T Consensus       432 ~~~l  435 (861)
T d2bpta1         432 AWCI  435 (861)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.8e-10  Score=96.01  Aligned_cols=102  Identities=19%  Similarity=0.139  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-CcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcc
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-EDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSF  132 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~  132 (165)
                      .+.|.++..+.+       ..|..+.+|..+|..|+..+| +...+.++|.+.+.+.+++|..|.+++.+++.++++++.
T Consensus       441 ~l~~~l~~~l~D-------~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~  513 (588)
T d1b3ua_         441 KLNSLCMAWLVD-------HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ  513 (588)
T ss_dssp             HHHHHHHHGGGC-------SSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccC-------CchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCh
Confidence            455555555531       248889999999999999999 457788899999999999999999999999999998776


Q ss_pred             hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        133 IITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ..   ..+.++|.+.+.+.||.|.||.+|+.+|
T Consensus       514 ~~---~~~~ilp~ll~~~~D~v~nVR~~a~~~l  543 (588)
T d1b3ua_         514 DI---TTKHMLPTVLRMAGDPVANVRFNVAKSL  543 (588)
T ss_dssp             HH---HHHHTHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            42   3567899999999999999999987653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.4e-09  Score=93.26  Aligned_cols=92  Identities=10%  Similarity=0.128  Sum_probs=79.8

Q ss_pred             CCchhhHHHHHHHHHHHHcCC---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhc
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEE---DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEAT  150 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l  150 (165)
                      +|..+.+|..+|..++..+.+   ..++.++|++-+.++++++..|.+++.++|.+++.........+++.+++.+++.+
T Consensus       408 ~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l  487 (888)
T d1qbkb_         408 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI  487 (888)
T ss_dssp             SHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHh
Confidence            599999999999888765553   45788999999999999999999999999999986665545568999999999999


Q ss_pred             CCCCHHHHHHHHhcC
Q psy12576        151 QSPDTQIRVAALQCL  165 (165)
Q Consensus       151 ~D~~p~VR~aA~~al  165 (165)
                      .|++++||.+|+.||
T Consensus       488 ~d~~~~V~~~a~~al  502 (888)
T d1qbkb_         488 LDSNKRVQEAACSAF  502 (888)
T ss_dssp             SSSCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHH
Confidence            999999999999874

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=3.2e-08  Score=86.91  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=69.7

Q ss_pred             CCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcc------cCchHHHHHHHHHHHHhhcCCcc--------------
Q psy12576         73 DDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIE------HADWRHRDAALMSFGAILVRPSF--------------  132 (165)
Q Consensus        73 dew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~------~~dw~~R~Aa~~Alg~i~EG~~~--------------  132 (165)
                      |.|+++.+|+.++..++...++.+++.+++++.+.+.      +.+|+.|++++.++|++....+.              
T Consensus       373 ~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~  452 (959)
T d1wa5c_         373 DTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV  452 (959)
T ss_dssp             ---CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred             ccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhH
Confidence            3468999999999999999998888998888877664      57899999999999988743210              


Q ss_pred             -----------------------------------hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        133 -----------------------------------IITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       133 -----------------------------------~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                                                         .....+++.+++.+++.++|+++.||..|+.|+
T Consensus       453 ~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al  520 (959)
T d1wa5c_         453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITI  520 (959)
T ss_dssp             HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence                                               001245677888888888888888888887653

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.7e-08  Score=82.07  Aligned_cols=104  Identities=16%  Similarity=0.153  Sum_probs=86.5

Q ss_pred             HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC-cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE-DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~-~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      .+.++|.+.+.+.+       ..|..+.++..+|..++..+|. .+.+.+.+++...+.++.|..|.+|+.++|.++...
T Consensus       400 ~~~ll~~l~~~~~d-------~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~  472 (588)
T d1b3ua_         400 SQSLLPAIVELAED-------AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF  472 (588)
T ss_dssp             HHHHHHHHHHHHTC-------SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh
Confidence            45667776666532       3599999999999999999994 556778899999999999999999999999999866


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +..   ...+.++|.+.+.+.|++..+|.+|++|+
T Consensus       473 ~~~---~~~~~i~~~l~~~~~~~~~~~R~~~~~~l  504 (588)
T d1b3ua_         473 GKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCI  504 (588)
T ss_dssp             CHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            653   24677899999999999999999998874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.61  E-value=6.9e-08  Score=65.44  Aligned_cols=86  Identities=16%  Similarity=0.096  Sum_probs=62.4

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchh
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFII  134 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~  134 (165)
                      -++.|++.|.+       ++|..+..|..+|.   .. +   -+..+|.+.+.+.+++|..|.+|+.|||.|..      
T Consensus        23 ~~~~L~~~l~d-------~~~~vR~~a~~~L~---~~-~---~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~------   82 (111)
T d1te4a_          23 AFEPLLESLSN-------EDWRIRGAAAWIIG---NF-Q---DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------   82 (111)
T ss_dssp             THHHHHHGGGC-------SCHHHHHHHHHHHG---GG-C---SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS------
T ss_pred             HHHHHHHHHcC-------CCHHHHHHHHHHHH---hc-c---hhhhHHHHHhhhccchhHHHHHHHHHHHHhCc------
Confidence            34556665542       24777777776653   22 2   23455666677889999999999999998842      


Q ss_pred             chHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        135 TISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       135 ~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                           +..++.+.+.++|+++.||.+|+.+|
T Consensus        83 -----~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          83 -----ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             -----HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             -----cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 34577778889999999999999875

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.2e-07  Score=71.13  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=68.8

Q ss_pred             HhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcC-C---cchhhHHHHHhhhcccCchHHHHHHHHHHHHhh
Q psy12576         52 LQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCE-E---DMVPHILPFVNANIEHADWRHRDAALMSFGAIL  127 (165)
Q Consensus        52 ~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~-~---~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~  127 (165)
                      ++.++|.+.+.+..       ++|..+.+|..+|..++..+. +   ..++.++|++.+.+++++++.|.+|+.+||.++
T Consensus       363 ~~~l~~~i~~~l~s-------~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~  435 (458)
T d1ibrb_         363 VPHVLPFIKEHIKN-------PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC  435 (458)
T ss_dssp             HHHHHHHHHHHTTC-------SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            34455555555432       259999999999988886554 3   357889999999999999999999999999999


Q ss_pred             cCCcch-hchHhHHHHHHHHHhh
Q psy12576        128 VRPSFI-ITISERNFIMEVVCEA  149 (165)
Q Consensus       128 EG~~~~-~~~~~l~~il~~v~~~  149 (165)
                      +..... ....+++.+++.+++|
T Consensus       436 ~~~~~~~~~~~~l~~ll~~ll~g  458 (458)
T d1ibrb_         436 ELLPEAAINDVYLAPLLQCLIEG  458 (458)
T ss_dssp             HHGGGGCCSTTTHHHHHHHHHCC
T ss_pred             HHhhcccchhhHHHHHHHHHhCc
Confidence            977653 3445678888877654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=5.2e-07  Score=81.11  Aligned_cols=87  Identities=15%  Similarity=0.129  Sum_probs=73.0

Q ss_pred             CCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCC
Q psy12576         74 DWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSP  153 (165)
Q Consensus        74 ew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~  153 (165)
                      ++..+..++.||..|+...+..    ++|.+.+.+.+++|..|.+++.+++.+...-.... ..++..+++.+++.++||
T Consensus       941 ~~~vr~~~a~~lg~L~~~~~~~----~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~-~~~l~~li~~ll~~l~d~ 1015 (1207)
T d1u6gc_         941 EEGTRNVVAECLGKLTLIDPET----LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI-DPLLKNCIGDFLKTLEDP 1015 (1207)
T ss_dssp             STTHHHHHHHHHHHHHHSSGGG----THHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTH-HHHHHHHSTTTHHHHSSS
T ss_pred             cHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHhCCC
Confidence            3567888999999998876654    45677788999999999999999998887655543 458999999999999999


Q ss_pred             CHHHHHHHHhcC
Q psy12576        154 DTQIRVAALQCL  165 (165)
Q Consensus       154 ~p~VR~aA~~al  165 (165)
                      ++.||.+|+.||
T Consensus      1016 ~~~vR~~al~~l 1027 (1207)
T d1u6gc_        1016 DLNVRRVALVTF 1027 (1207)
T ss_dssp             STHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999998764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.9e-06  Score=62.91  Aligned_cols=138  Identities=7%  Similarity=-0.044  Sum_probs=95.9

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      ++++.++..+|...+.+++......                 ...+..   ...+|.|++++....      +......+
T Consensus        69 ~s~~~~vr~~A~~~L~~l~~~~~~~-----------------~~~~~~---~~~i~~Lv~lL~~~~------~~~v~~~a  122 (264)
T d1xqra1          69 EAGAAGLRWRAAQLIGTCSQNVAAI-----------------QEQVLG---LGALRKLLRLLDRDA------CDTVRVKA  122 (264)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTCHHH-----------------HHHHHH---TTHHHHHHHHHHHCS------CHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH---cCchHHHHHHhhcCC------CHHHHHHH
Confidence            4677788889999999888631110                 001111   357788888776421      23566777


Q ss_pred             HHHHHHHHHHcCC--cc--hhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHH
Q psy12576         82 GVCLMLLSSCCEE--DM--VPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQI  157 (165)
Q Consensus        82 ~~~Ld~la~~~~~--~i--~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~V  157 (165)
                      ..+|..++...++  ..  -...++.+...+.+++...|..++.+++.++.+.......-.-...+|.+++.+.++++.|
T Consensus       123 ~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~  202 (264)
T d1xqra1         123 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPF  202 (264)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTH
T ss_pred             HHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHH
Confidence            7788888766653  12  2335677777888999999999999999999876553222123457899999999999999


Q ss_pred             HHHHHhcC
Q psy12576        158 RVAALQCL  165 (165)
Q Consensus       158 R~aA~~al  165 (165)
                      |..|+.+|
T Consensus       203 ~~~a~~aL  210 (264)
T d1xqra1         203 HEHVLGAL  210 (264)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998774

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=1.2e-05  Score=68.06  Aligned_cols=109  Identities=27%  Similarity=0.318  Sum_probs=79.6

Q ss_pred             HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cchhhH---HHHHhhhc--ccCchHHHHHHHHH
Q psy12576         51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMVPHI---LPFVNANI--EHADWRHRDAALMS  122 (165)
Q Consensus        51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~~~v---l~~i~~~l--~~~dw~~R~Aa~~A  122 (165)
                      -||.|+|.|++.+...+      .+..+.+|..+|..+....+.   .+++.+   ++.+-+.+  .+.+...|.+++.+
T Consensus       131 ~wpeli~~L~~~~~s~~------~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~  204 (861)
T d2bpta1         131 AWPELMKIMVDNTGAEQ------PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNA  204 (861)
T ss_dssp             CCHHHHHHHHHHTSTTS------CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence            47888998888775322      245566778888888777764   234433   33333333  34568999999999


Q ss_pred             HHHhhcCCcch-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        123 FGAILVRPSFI-ITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       123 lg~i~EG~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ++...+.+... ......+.+++.+++.++++++.||.+|+.||
T Consensus       205 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  248 (861)
T d2bpta1         205 LADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCL  248 (861)
T ss_dssp             HHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHH
Confidence            99999888764 34446788999999999999999999998764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.2e-05  Score=60.10  Aligned_cols=98  Identities=13%  Similarity=0.088  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHH-hhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFV-NANIEHADWRHRDAALMSFGAILVRPS  131 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i-~~~l~~~dw~~R~Aa~~Alg~i~EG~~  131 (165)
                      +..+|.+++++.+.       ++..+..|..+|..+...  ....+.+++.+ ...+.+++|..|.+++.+||.+..+-.
T Consensus        49 ~~~~~~l~~~l~d~-------~~~vr~~a~~aL~~l~~~--~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~  119 (276)
T d1oyza_          49 QDAVRLAIEFCSDK-------NYIRRDIGAFILGQIKIC--KKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP  119 (276)
T ss_dssp             HHHHHHHHHHHTCS-------SHHHHHHHHHHHHHSCCC--TTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG
T ss_pred             HhHHHHHHHHHcCC-------CHHHHHHHHHHHHHhccc--cccccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccc
Confidence            45678888777522       366776776666544322  23444444433 445678999999999999998875432


Q ss_pred             chhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576        132 FIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus       132 ~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                           ...+.+++.+...+.|+++.||.+|..+
T Consensus       120 -----~~~~~~~~~l~~~~~d~~~~vr~~a~~~  147 (276)
T d1oyza_         120 -----IYSPKIVEQSQITAFDKSTNVRRATAFA  147 (276)
T ss_dssp             -----GGHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             -----hhhHHHHHHHHHHhcCcchHHHHHHHHH
Confidence                 2456788888889999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.02  E-value=2.1e-06  Score=57.76  Aligned_cols=72  Identities=17%  Similarity=0.192  Sum_probs=52.9

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPD  154 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~  154 (165)
                      +..+..|..+|..    +|+..++.    +.+.+.+++|..|.+|+.+||.+..           +..++.+.+.++|++
T Consensus         6 ~~VR~~A~~aL~~----~~~~~~~~----L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~   66 (111)
T d1te4a_           6 KWVRRDVSTALSR----MGDEAFEP----LLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDS   66 (111)
T ss_dssp             CCSSSSCCSSTTS----CSSTTHHH----HHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHH----hCHHHHHH----HHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccch
Confidence            4556666655542    45444444    3457889999999999999987642           235677888899999


Q ss_pred             HHHHHHHHhcC
Q psy12576        155 TQIRVAALQCL  165 (165)
Q Consensus       155 p~VR~aA~~al  165 (165)
                      |.||.+|+.+|
T Consensus        67 ~~VR~~a~~aL   77 (111)
T d1te4a_          67 GFVRSGAARSL   77 (111)
T ss_dssp             THHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            99999998875

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.9e-06  Score=77.35  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhc-ccCchHHHHHHHHHHHHhhcCCcc
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANI-EHADWRHRDAALMSFGAILVRPSF  132 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l-~~~dw~~R~Aa~~Alg~i~EG~~~  132 (165)
                      .+++.++..+..       ..+..++.|.+||..++..+++..++.+++.+-..+ .+.++..|++++.++|.++.+.+.
T Consensus       172 ~il~~l~~~l~~-------~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~  244 (1207)
T d1u6gc_         172 SILTCLLPQLTS-------PRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH  244 (1207)
T ss_dssp             HHHHHHGGGGGC-------SSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG
T ss_pred             HHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch
Confidence            355555554442       247889999999999999999777777666555444 467788899999999999998776


Q ss_pred             hhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        133 IITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       133 ~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      . ..++++.++|.+.+.+++.++.||.+|+.++
T Consensus       245 ~-~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l  276 (1207)
T d1u6gc_         245 R-IGEYLEKIIPLVVKFCNVDDDELREYCIQAF  276 (1207)
T ss_dssp             G-GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred             h-hHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence            4 4468999999999999999999999998763

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=8.1e-05  Score=63.28  Aligned_cols=110  Identities=30%  Similarity=0.304  Sum_probs=82.9

Q ss_pred             HHhHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhccc--CchHHHHHHHHHHH
Q psy12576         51 ALQYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIEH--ADWRHRDAALMSFG  124 (165)
Q Consensus        51 ~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~~--~dw~~R~Aa~~Alg  124 (165)
                      -||.++|.|++.+...+     ...+.+.++..+|..+...++.    ...+.+++.+.+.+.+  ++...|.+|+.+++
T Consensus       125 ~Wpeli~~L~~~l~~~~-----~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~  199 (876)
T d1qgra_         125 QWPELIPQLVANVTNPN-----STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL  199 (876)
T ss_dssp             CCTTHHHHHHHHHHCTT-----CCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHH
Confidence            48899999999988543     1234566778888888776663    2334566666666654  45789999999999


Q ss_pred             HhhcCCcch-hchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        125 AILVRPSFI-ITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       125 ~i~EG~~~~-~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ...+..... ......+.+++.++..++++++.||..|+.||
T Consensus       200 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l  241 (876)
T d1qgra_         200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL  241 (876)
T ss_dssp             HHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            999877764 34445778999999999999999999999874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=0.00014  Score=59.44  Aligned_cols=136  Identities=18%  Similarity=0.083  Sum_probs=93.0

Q ss_pred             CchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHH
Q psy12576          3 SDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAG   82 (165)
Q Consensus         3 ~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~   82 (165)
                      ++++++...|+.++..|+....+                  .+.++..  ..+++.++.++...       ..+..+.+.
T Consensus       173 s~~~~i~~~a~~~L~nia~~~~~------------------~r~~l~~--~~~~~~L~~ll~~~-------~~~~~~~~~  225 (503)
T d1wa5b_         173 TGSVEVKEQAIWALGNVAGDSTD------------------YRDYVLQ--CNAMEPILGLFNSN-------KPSLIRTAT  225 (503)
T ss_dssp             HCCHHHHHHHHHHHHHHHTTCHH------------------HHHHHHH--TTCHHHHHHGGGSC-------CHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHHhhhhHH------------------HHHHHHh--hcccccchhhcccC-------CHHHHHHHH
Confidence            45666777788877777753111                  1111111  23566666666422       134566677


Q ss_pred             HHHHHHHHHcCC----cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576         83 VCLMLLSSCCEE----DMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIR  158 (165)
Q Consensus        83 ~~Ld~la~~~~~----~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR  158 (165)
                      .+|-.++.....    ..+..++|.+...+.+.|+..+..++.+|+.++++..+....-.-..+++.++..+.++++.|+
T Consensus       226 ~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~  305 (503)
T d1wa5b_         226 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ  305 (503)
T ss_dssp             HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhh
Confidence            777777655432    2456788999999999999999999999999999877643322235678889999999999999


Q ss_pred             HHHHhcC
Q psy12576        159 VAALQCL  165 (165)
Q Consensus       159 ~aA~~al  165 (165)
                      ..|+.+|
T Consensus       306 ~~al~~l  312 (503)
T d1wa5b_         306 TPALRAV  312 (503)
T ss_dssp             HHHHHHH
T ss_pred             hhHHHHH
Confidence            9987653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=0.00027  Score=57.58  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCCc---ch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEED---MV-PHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~~---i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      .++|.++..+...+       ......+..+|..++...++.   ++ ..+++.+...+.++++..+..++.++|.++.|
T Consensus       246 ~~l~~l~~~l~~~d-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~  318 (503)
T d1wa5b_         246 QALPTLAKLIYSMD-------TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  318 (503)
T ss_dssp             GGHHHHHHHTTCCC-------HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcccc-------HHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHH
Confidence            46777777765422       345666777888887644331   22 34667777888999999999999999999987


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..+++.+...+.++++.||..|+.+|
T Consensus       319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l  354 (503)
T d1wa5b_         319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  354 (503)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence            665332222356889999999999999999988663

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00021  Score=53.00  Aligned_cols=78  Identities=10%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             CchhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhh-cCCC
Q psy12576         75 WNPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEA-TQSP  153 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~-l~D~  153 (165)
                      ...+..|..+|..+    |+   +.++|.+.+.+.+++|..|.+|+.+||.+..+...      .+.+++.+... +.|+
T Consensus        33 ~~vR~~A~~~L~~~----~~---~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~------~~~~~~~l~~~~l~d~   99 (276)
T d1oyza_          33 SLKRISSARVLQLR----GG---QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC------EDNVFNILNNMALNDK   99 (276)
T ss_dssp             HHHHHHHHHHHHHH----CC---HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT------HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhh----CC---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc------ccchHHHHHHHHhcCC
Confidence            46677777776644    32   33455556667799999999999999998754332      22233333333 5699


Q ss_pred             CHHHHHHHHhcC
Q psy12576        154 DTQIRVAALQCL  165 (165)
Q Consensus       154 ~p~VR~aA~~al  165 (165)
                      ++.||.+|+.+|
T Consensus       100 ~~~vr~~a~~aL  111 (276)
T d1oyza_         100 SACVRATAIEST  111 (276)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHH
Confidence            999999998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00021  Score=56.39  Aligned_cols=106  Identities=11%  Similarity=0.072  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhc
Q psy12576         53 QYLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILV  128 (165)
Q Consensus        53 ~~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~E  128 (165)
                      ..++|.+++++...       +......+..+|..++..-+.   .++ ..+++.+.+.+++++...|+.|+.+++.++.
T Consensus       229 ~~~~~~Lv~ll~~~-------~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~  301 (434)
T d1q1sc_         229 KGVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  301 (434)
T ss_dssp             TTCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred             cccchhcccccccc-------hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcc
Confidence            35677777776532       256667777777776543221   122 2345566677889999999999999999998


Q ss_pred             CCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        129 RPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       129 G~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +.......-.-..+++.+++.+.++++.||..|+.+|
T Consensus       302 ~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l  338 (434)
T d1q1sc_         302 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI  338 (434)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             ccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHH
Confidence            7655322112345889999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00064  Score=55.55  Aligned_cols=138  Identities=9%  Similarity=0.053  Sum_probs=89.1

Q ss_pred             CCchhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHH
Q psy12576          2 KSDIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAA   81 (165)
Q Consensus         2 ~~~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a   81 (165)
                      ++++..+...|......++..+...                  +.++.  -+.++|.++..|...++      -...+.|
T Consensus        27 ~~~~~~v~~~A~~~l~~l~~~~~~~------------------~~~~~--~~~~v~~l~~~L~~~~~------~~~~~~a   80 (529)
T d1jdha_          27 NDEDQVVVNKAAVMVHQLSKKEASR------------------HAIMR--SPQMVSAIVRTMQNTND------VETARCT   80 (529)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTSHHHH------------------HHHHT--CHHHHHHHHHHHHHCCC------HHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhccHHH------------------HHHHH--hhhHHHHHHHHHcCCCC------HHHHHHH
Confidence            4556666677777666666432110                  01111  14578888888875431      2356667


Q ss_pred             HHHHHHHHHHcCC--cchh-hHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576         82 GVCLMLLSSCCEE--DMVP-HILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIR  158 (165)
Q Consensus        82 ~~~Ld~la~~~~~--~i~~-~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR  158 (165)
                      ..+|-.|+..-..  .++. -.+|.+-..+.+++...++.|+.+|+.++.+.......-.....+|.++..++++++.+|
T Consensus        81 ~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~  160 (529)
T d1jdha_          81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL  160 (529)
T ss_dssp             HHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHH
T ss_pred             HHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHH
Confidence            7777777542221  2222 235555666788999999999999999987655432211245678999999999999999


Q ss_pred             HHHHhcC
Q psy12576        159 VAALQCL  165 (165)
Q Consensus       159 ~aA~~al  165 (165)
                      ..|+.||
T Consensus       161 ~~a~~~L  167 (529)
T d1jdha_         161 AITTDCL  167 (529)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.0025  Score=49.90  Aligned_cols=110  Identities=15%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC----cchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE----DMVPHILPFVNANIEHADWRHRDAALMSFGAILVR  129 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~----~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG  129 (165)
                      ..++.++..+...+....  ....-+....+|..+....+.    .....++|.+...+.++++..|..++.+++.++.+
T Consensus       141 ~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~  218 (434)
T d1q1sc_         141 GAIDPLLALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG  218 (434)
T ss_dssp             TCHHHHHHHTCSSCGGGS--CHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             hhhhHHHHHHHhcccccc--hHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh
Confidence            456667777764331110  111123334445544443321    13456778888889999999999999999999987


Q ss_pred             CcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        130 PSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       130 ~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      .......-.-..+++.+++.+.++++.|+.+|+.+|
T Consensus       219 ~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l  254 (434)
T d1q1sc_         219 PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  254 (434)
T ss_dssp             CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hhhhHHHHhhcccchhcccccccchhhhhhchhhhh
Confidence            655322223456788999999999999999998753

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.0015  Score=49.23  Aligned_cols=135  Identities=11%  Similarity=-0.004  Sum_probs=86.3

Q ss_pred             chhHHHHHHHHHHHHHhHhhhhhhhhhHHhhhcCCCCCcccHHHHHHHHhHHHHHHHHHhhccCCCCCcCCCchhhHHHH
Q psy12576          4 DIDEVALQGIEFWSNVSDEEVDLAIEDSEAADFGRPPTRTSRFYAKGALQYLVPILTQKLTKQEELDDEDDWNPCKAAGV   83 (165)
Q Consensus         4 ~~e~va~~aiEfw~tl~e~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~p~ll~~l~~~~ed~dddew~~~~~a~~   83 (165)
                      .+++....|++-...+++..-.                  ...+.+-   .-++.++..+...+      +......|..
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~------------------a~~l~~~---gg~~~ll~~ll~s~------~~~vr~~A~~   81 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDN------------------AADFCQL---SGMHLLVGRYLEAG------AAGLRWRAAQ   81 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHH------------------HHHHHHT---THHHHHHHTTTTCS------SHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHHH------------------HHHHHHc---CCHHHHHHHHhCCC------CHHHHHHHHH
Confidence            4556677777777777753110                  0012211   23455555444322      2467788888


Q ss_pred             HHHHHHHHcCC---cch-hhHHHHHhhhcc-cCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHH
Q psy12576         84 CLMLLSSCCEE---DMV-PHILPFVNANIE-HADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIR  158 (165)
Q Consensus        84 ~Ld~la~~~~~---~i~-~~vl~~i~~~l~-~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR  158 (165)
                      +|..++..-+.   .++ ..++|.+.+.+. +.++..|+.++.|++.++.+.......-.....++.+++.+.++++.||
T Consensus        82 ~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~  161 (264)
T d1xqra1          82 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK  161 (264)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHH
Confidence            88888876542   122 234555555554 5678899999999999998776643222346678999999999999999


Q ss_pred             HHHHhcC
Q psy12576        159 VAALQCL  165 (165)
Q Consensus       159 ~aA~~al  165 (165)
                      ..|+.+|
T Consensus       162 ~~a~~~L  168 (264)
T d1xqra1         162 VKSAFLL  168 (264)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0015  Score=50.18  Aligned_cols=104  Identities=11%  Similarity=0.001  Sum_probs=69.0

Q ss_pred             HHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC---cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         55 LVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE---DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        55 l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~---~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      .+|.|+++|...+       -.....|+.+|..|+..-++   .+. .-.+|.+.+.+.+++...|++|+.||+.++.+-
T Consensus         3 ~ip~lv~~L~~~~-------~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~   75 (457)
T d1xm9a1           3 TIPKAVQYLSSQD-------EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS   75 (457)
T ss_dssp             CHHHHHHHHHSSC-------THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHhCCCC-------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence            4788999997543       35566677777776533222   122 123555556788999999999999999999766


Q ss_pred             cchhchHhHHHHHHHHHhhcC-CCCHHHHHHHHhcC
Q psy12576        131 SFIITISERNFIMEVVCEATQ-SPDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~-D~~p~VR~aA~~al  165 (165)
                      .+....-.-...++.+++.+. +.++.||..|+.+|
T Consensus        76 ~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l  111 (457)
T d1xm9a1          76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLL  111 (457)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHH
Confidence            553221112234677777764 78899999887653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00088  Score=51.48  Aligned_cols=65  Identities=11%  Similarity=0.025  Sum_probs=53.0

Q ss_pred             HHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        101 LPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       101 l~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      +|-+-+.++++++..|..|..+||.++-|..+....-.....+|.+++.+.++++.||.+|+.||
T Consensus         4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL   68 (457)
T d1xm9a1           4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGAL   68 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence            55666778899999999999999999987766433323456789999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.16  Score=40.58  Aligned_cols=103  Identities=12%  Similarity=0.040  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhhccCCCCCcCCCchhhHHHHHHHHHHHHcCC--cch-hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCC
Q psy12576         54 YLVPILTQKLTKQEELDDEDDWNPCKAAGVCLMLLSSCCEE--DMV-PHILPFVNANIEHADWRHRDAALMSFGAILVRP  130 (165)
Q Consensus        54 ~l~p~ll~~l~~~~ed~dddew~~~~~a~~~Ld~la~~~~~--~i~-~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~  130 (165)
                      ..++.++.++...+      .......+..+|..++..-..  .++ .-.++.+...+.+++.+.+..++.+++.+..+.
T Consensus       185 ~~~~~L~~ll~~~~------~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~  258 (529)
T d1jdha_         185 GGPQALVNIMRTYT------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA  258 (529)
T ss_dssp             THHHHHHHHHHHCC------CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHhhh------hHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccc
Confidence            34666667665432      124555666777777653331  122 224566777888999999999999999998766


Q ss_pred             cchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        131 SFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       131 ~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ....   ....+++.+++.+.++++.||..|+.+|
T Consensus       259 ~~~~---~~~~~i~~Lv~ll~~~~~~~~~~a~~~L  290 (529)
T d1jdha_         259 TKQE---GMEGLLGTLVQLLGSDDINVVTCAAGIL  290 (529)
T ss_dssp             TTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             cchh---hhhhcchhhhhhcccccHHHHHHHHHHH
Confidence            5432   3467889999999999999999887653

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.29  E-value=0.029  Score=42.32  Aligned_cols=61  Identities=13%  Similarity=0.195  Sum_probs=34.1

Q ss_pred             hhhcccCchHHHHHHHHHHHH-----hhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhcC
Q psy12576        105 NANIEHADWRHRDAALMSFGA-----ILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQCL  165 (165)
Q Consensus       105 ~~~l~~~dw~~R~Aa~~Alg~-----i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~al  165 (165)
                      ...++++++..|.+++.++|.     .+.......+..-.+.+-+.++..|.|++|.||.+|.+.|
T Consensus       168 ~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~~~~~ll~~L~D~d~~VR~aA~~~L  233 (233)
T d1lrva_         168 GLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAGRL  233 (233)
T ss_dssp             GGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHSCHHHHHHCCCCCHHHHHHHHCCC
T ss_pred             HHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHhccHHHHHHhCCCCHHHHHHHHHhC
Confidence            344556666666666655441     1111111122221233334567788999999999998765

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.39  E-value=0.25  Score=41.95  Aligned_cols=56  Identities=16%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             chhhHHHHHHHHHHHHcCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCc
Q psy12576         76 NPCKAAGVCLMLLSSCCEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPS  131 (165)
Q Consensus        76 ~~~~~a~~~Ld~la~~~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~  131 (165)
                      ..+...+.++..++..-...--|.++|.+.+.++++++..+.+++.++..|.+...
T Consensus       100 ~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~  155 (959)
T d1wa5c_         100 NLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR  155 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred             HHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            56778889999998864323478999999999999999999999999999987543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.74  E-value=0.54  Score=36.66  Aligned_cols=84  Identities=14%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             CchhhHHHHHHHHHHHH-------cCCcchhhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHH
Q psy12576         75 WNPCKAAGVCLMLLSSC-------CEEDMVPHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVC  147 (165)
Q Consensus        75 w~~~~~a~~~Ld~la~~-------~~~~i~~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~  147 (165)
                      +.....+.-++..|...       +++.+++.+..++.+.....+-..+..++.|||.++..  .     -++.+.+++.
T Consensus       141 ~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--~-----~i~~l~~~l~  213 (336)
T d1lsha1         141 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--N-----SIKKIQRFLP  213 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--G-----GHHHHHTTST
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCCH--h-----HHHHHHHHhc
Confidence            44555666666666442       33457788888888888888888888999999999741  1     2344444422


Q ss_pred             hh---cCCCCHHHHHHHHhcC
Q psy12576        148 EA---TQSPDTQIRVAALQCL  165 (165)
Q Consensus       148 ~~---l~D~~p~VR~aA~~al  165 (165)
                      ..   ..+..++||.+|.+||
T Consensus       214 ~~~~~~~~~~~~vR~aAi~Al  234 (336)
T d1lsha1         214 GQGKSLDEYSTRVQAEAIMAL  234 (336)
T ss_dssp             TSSSCCCCSCHHHHHHHHHTT
T ss_pred             ccccccccccHHHHHHHHHHH
Confidence            21   1245789999999886

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=89.60  E-value=0.17  Score=39.76  Aligned_cols=76  Identities=13%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             HHHHHHHHHcCCcchhhHHHHHhhhc---ccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHH
Q psy12576         83 VCLMLLSSCCEEDMVPHILPFVNANI---EHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRV  159 (165)
Q Consensus        83 ~~Ld~la~~~~~~i~~~vl~~i~~~l---~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~  159 (165)
                      .+|..|++.--..+++.+.+++...-   .+...+.|.+|+.||..+..-...    .-++.++++..+  ...++.||-
T Consensus       191 ~~LkaLGN~g~p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~----~v~~~l~~i~~n--~~e~~EvRi  264 (336)
T d1lsha1         191 LALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR----KVQEIVLPIFLN--VAIKSELRI  264 (336)
T ss_dssp             HHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH----HHHHHHHHHHHC--TTSCHHHHH
T ss_pred             HHHHHHhccCCHhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcH----HHHHHHHHHHcC--CCCChHHHH
Confidence            34666664422456777777764432   234678999999999988764322    134556666554  466788999


Q ss_pred             HHHhc
Q psy12576        160 AALQC  164 (165)
Q Consensus       160 aA~~a  164 (165)
                      ||+..
T Consensus       265 aA~~~  269 (336)
T d1lsha1         265 RSCIV  269 (336)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein BC3264
species: Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]

Probab=89.14  E-value=0.43  Score=35.52  Aligned_cols=67  Identities=12%  Similarity=0.035  Sum_probs=49.3

Q ss_pred             hhHHHHHhhhcccCchHHHHHHHHHHH-HhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHhc
Q psy12576         98 PHILPFVNANIEHADWRHRDAALMSFG-AILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQC  164 (165)
Q Consensus        98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg-~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~a  164 (165)
                      |....++.+.+.|++-..|++|+..+. -+..+.....-..+++.+++.+-..+.|++..||+|--.+
T Consensus       107 ~~~~~~~~~W~~S~~~w~rRag~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~i~d~~~~v~kAv~W~  174 (235)
T d1t06a_         107 NIAQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNF  174 (235)
T ss_dssp             SSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred             hhHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            666778888888887666666665555 4444544433445789999998899999999999987544

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.27  E-value=1.2  Score=32.21  Aligned_cols=59  Identities=10%  Similarity=0.090  Sum_probs=40.7

Q ss_pred             hhHHHHHhhhcccCchHHHHHHHHHHHHhhcCCcchhchHhHHHHHHHHHhhcCCCCHHHHHHHHh
Q psy12576         98 PHILPFVNANIEHADWRHRDAALMSFGAILVRPSFIITISERNFIMEVVCEATQSPDTQIRVAALQ  163 (165)
Q Consensus        98 ~~vl~~i~~~l~~~dw~~R~Aa~~Alg~i~EG~~~~~~~~~l~~il~~v~~~l~D~~p~VR~aA~~  163 (165)
                      +.+.+.+.+...|++...|++|+++.   +    ........+.++..+...+.|++.-||.|-.-
T Consensus       118 ~~~~~~l~~w~~s~~~w~rR~aiv~~---l----~~~~~~~~~~~~~~~~~~~~d~e~~i~kAigW  176 (213)
T d2b6ca1         118 TELPTIFALFYGAENFWNRRVALNLQ---L----MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGW  176 (213)
T ss_dssp             GGHHHHHHHHTTCSSHHHHHHHHHTT---T----TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHH---H----HHHHcccHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            34567777888888866676776643   1    11233356777888778889999999998643