Psyllid ID: psy13192

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-
MSSYDIKVHSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLERESEINPEQEEDEKPLRCGQEKVQLTCVHIFHLDT
cccccccccccccccHHHHHHHHHHHHHcccEEEEEEEccEEEEEEccEEcccEEEEEccccccHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHcHHHHHHHcccccccEEEEEEEcccccccccEEEEEEccccccccEEEcccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccEEEEEEEEEcccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHcccEEEEEEccccEEEEEEEEEEEEEEcccccccEEEEccccHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccccccEEEEEEEEEEEEcc
ccEEEEEEccccccccHHHHHHHHHHHHccccEEEEEEccEEEEEEccEEEccEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccccccccEEEEEEccccccccEEEEccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccEEEEEEEEcccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHcccEEEEEccccccEEEEEEEEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHcEEEEEccccccccccHHHcccccccccEEEEEEEEEEEEcc
mssydikvhsnwcQHEYEVNLLRLIDkltngttlevnetgttlvfqpgilvggliqhecckergiGYYLEVCLALAPFCKKGLQIVMRgvtnnqkdpsvdsfkagglpvlkqflvvdpGIELIIkkrgmepegggeiyfncpiiksikpvqskdmgkikRIRGTVFALRVSPAIANRIVDTAKGILLSylpdvylsvdhckgpksgkspgfggsiyaesstgvvltadavsppppatrtvpetLGEQLAYNLLEEIsrggmvdssfQSLGCLYMALHQKdvsqlligplspyTVQFLRHLKQFFGLkfklehesgmvdssfqSLGCLYMALHQKdvsqlligplspyTVQFLRHLKQFFGlkfklereseinpeqeedekplrcgqekvqlTCVHIFHLDT
mssydikvhsnwcQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTnnqkdpsvdsfkagglpvlkqflvVDPGIELIIKkrgmepeggGEIYfncpiiksikpvqskdmgkIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLERESeinpeqeedekplrcgqekvqLTCVHIFHLDT
MSSYDIKVHSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCkgpksgkspgfggsIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLERESEINPEQEEDEKPLRCGQEKVQLTCVHIFHLDT
****DIKVHSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNN*****VDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCK*************IY*****GVVL******************LGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKL*********************EKVQLTCVHIFHL**
*SSYDIKVHSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADA**************LGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLER****************CGQEKVQLTCVHIFHLD*
MSSYDIKVHSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLERES*************RCGQEKVQLTCVHIFHLDT
MSSYDIKVHSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLERES***PEQE****PLRCGQEKVQLTCVHIFHLDT
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MSSYDIKVHSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLERESEINPEQEEDEKPLRCGQEKVQLTCVHIFHLDT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query401 2.2.26 [Sep-21-2011]
P56175384 Probable RNA 3'-terminal yes N/A 0.743 0.776 0.534 2e-91
Q9Y2P8373 RNA 3'-terminal phosphate yes N/A 0.740 0.796 0.560 2e-87
Q9JJT0373 RNA 3'-terminal phosphate yes N/A 0.740 0.796 0.563 5e-87
Q2KHX8373 RNA 3'-terminal phosphate yes N/A 0.740 0.796 0.557 5e-87
Q54S38371 Probable RNA 3'-terminal yes N/A 0.793 0.857 0.429 4e-73
Q23400379 Probable RNA 3'-terminal yes N/A 0.740 0.783 0.424 6e-69
Q9C578375 Probable RNA 3'-terminal yes N/A 0.735 0.786 0.423 4e-58
Q09870363 Probable RNA 3'-terminal yes N/A 0.780 0.862 0.377 6e-55
Q08096367 RNA 3'-terminal phosphate yes N/A 0.698 0.762 0.347 4e-45
Q2HJ88366 RNA 3'-terminal phosphate no N/A 0.720 0.789 0.254 9e-15
>sp|P56175|RCL1_DROME Probable RNA 3'-terminal phosphate cyclase-like protein OS=Drosophila melanogaster GN=Rtc1 PE=2 SV=3 Back     alignment and function desciption
 Score =  336 bits (862), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 161/301 (53%), Positives = 216/301 (71%), Gaps = 3/301 (0%)

Query: 15  HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
            EYE++L+RL+DK+TNGT +E+N  GT+++F PG+L GG + H+CC +RGIGYYL+  +A
Sbjct: 49  REYEISLIRLLDKITNGTKIELNPAGTSVMFSPGLLHGGQLNHDCCVQRGIGYYLDALIA 108

Query: 75  LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
           L PFCK  LQ  +RGVTN++  PSVD  K   L +LK+FL+VD G+EL + +RG+ P GG
Sbjct: 109 LGPFCKSPLQCTLRGVTNSKDSPSVDHIKGAALSLLKRFLLVDEGLELKVVRRGVAPLGG 168

Query: 135 GEIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
           GEI F CP+ KS++ +Q +  G +KRIRGTV+A +VSPA+ANR V+ AKG +L +LPDVY
Sbjct: 169 GEIIFRCPVRKSLRAIQFQSQGMVKRIRGTVYACKVSPAMANRTVEAAKGCMLKFLPDVY 228

Query: 195 LSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVS---PPPPATRTVPETLGEQLAYN 251
           +  D  KG  SG SPGFG  + AE++ GV   AD  S        T ++PE LG+++A  
Sbjct: 229 IYTDQNKGKMSGNSPGFGICLIAETTDGVCFAADCCSNTREESEDTPSIPENLGKEVALR 288

Query: 252 LLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
           LL+EI RGG VDSS+Q L  LY+AL QK VS+ L G LS YTV FL+HL+ FF + FKLE
Sbjct: 289 LLDEIYRGGCVDSSYQWLAALYIALGQKHVSKFLTGALSNYTVHFLQHLRDFFSITFKLE 348

Query: 312 H 312
           +
Sbjct: 349 N 349
Does not have cyclase activity. Plays a role in 40S-ribosomal-subunit biogenesis in the early pre-rRNA processing steps at sites A0, A1 and A2 that are required for proper maturation of the 18S RNA.
Drosophila melanogaster (taxid: 7227)
>sp|Q9Y2P8|RCL1_HUMAN RNA 3'-terminal phosphate cyclase-like protein OS=Homo sapiens GN=RCL1 PE=1 SV=3 Back     alignment and function description
>sp|Q9JJT0|RCL1_MOUSE RNA 3'-terminal phosphate cyclase-like protein OS=Mus musculus GN=Rcl1 PE=2 SV=1 Back     alignment and function description
>sp|Q2KHX8|RCL1_BOVIN RNA 3'-terminal phosphate cyclase-like protein OS=Bos taurus GN=RCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q54S38|RCL1_DICDI Probable RNA 3'-terminal phosphate cyclase-like protein OS=Dictyostelium discoideum GN=rcl1 PE=1 SV=2 Back     alignment and function description
>sp|Q23400|RCL1_CAEEL Probable RNA 3'-terminal phosphate cyclase-like protein OS=Caenorhabditis elegans GN=ZK1127.5 PE=3 SV=2 Back     alignment and function description
>sp|Q9C578|RCL1_ARATH Probable RNA 3'-terminal phosphate cyclase-like protein OS=Arabidopsis thaliana GN=At5g22100 PE=2 SV=1 Back     alignment and function description
>sp|Q09870|RCL1_SCHPO Probable RNA 3'-terminal phosphate cyclase-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC12G12.06c PE=3 SV=1 Back     alignment and function description
>sp|Q08096|RCL1_YEAST RNA 3'-terminal phosphate cyclase-like protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCL1 PE=1 SV=1 Back     alignment and function description
>sp|Q2HJ88|RTCA_BOVIN RNA 3'-terminal phosphate cyclase OS=Bos taurus GN=RTCA PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
193575641365 PREDICTED: RNA 3'-terminal phosphate cyc 0.768 0.843 0.603 1e-108
239790870365 ACYPI007470 [Acyrthosiphon pisum] 0.768 0.843 0.600 1e-108
242025388384 RNA 3' terminal phosphate cyclase, putat 0.768 0.802 0.588 1e-101
225711566370 RNA 3-terminal phosphate cyclase-like pr 0.738 0.8 0.555 2e-92
156551007377 PREDICTED: probable RNA 3'-terminal phos 0.743 0.790 0.543 4e-92
224091272373 PREDICTED: RNA 3'-terminal phosphate cyc 0.750 0.806 0.546 1e-91
58386084389 AGAP010498-PA [Anopheles gambiae str. PE 0.750 0.773 0.529 2e-91
357610133379 hypothetical protein KGM_00069 [Danaus p 0.730 0.773 0.543 2e-91
327263463373 PREDICTED: RNA 3'-terminal phosphate cyc 0.748 0.804 0.551 2e-91
195132103382 GI15953 [Drosophila mojavensis] gi|19390 0.743 0.780 0.533 3e-91
>gi|193575641|ref|XP_001945525.1| PREDICTED: RNA 3'-terminal phosphate cyclase-like protein-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 189/313 (60%), Positives = 243/313 (77%), Gaps = 5/313 (1%)

Query: 16  EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
           E+EVN LRL+DKLTNGT L+VNETGT L FQPG+L+GG I H+CCK RGIGYYLE+ + +
Sbjct: 39  EFEVNFLRLVDKLTNGTNLDVNETGTDLYFQPGLLIGGAIDHDCCKLRGIGYYLELIIMV 98

Query: 76  APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
           AP+CKKG+Q  ++GVTNNQKDPSVD+FKAG L +L++ L++     + IKKRGMEP+GGG
Sbjct: 99  APYCKKGIQATLKGVTNNQKDPSVDAFKAGALTILQRILLLATDANMEIKKRGMEPDGGG 158

Query: 136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYL 195
           EIYF+C  +K  K +Q  D GKIK+IRGT F+LRVSP+I+NR+V+ AK ++L ++PDVY 
Sbjct: 159 EIYFSCEPVKYTKALQLTDFGKIKKIRGTFFSLRVSPSISNRMVEKAKSVMLKFIPDVYF 218

Query: 196 SVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEE 255
           +VDH KG   GKSPGFG +I A ++ G++LTAD+VS P    RT  E + E +A  +LEE
Sbjct: 219 TVDHPKGKLCGKSPGFGANIVASTTNGIILTADSVSLPFTGQRTTAEEVAENVASAMLEE 278

Query: 256 ISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
           I RGG +DSSFQS+  LYMAL QKDVS +++GPLSPYT+QFLRHLK+FFG+ FKLE    
Sbjct: 279 IWRGGCIDSSFQSIVLLYMALRQKDVSHVVLGPLSPYTIQFLRHLKEFFGISFKLEP--- 335

Query: 316 MVDSSFQSL--GC 326
            +DS  + L  GC
Sbjct: 336 YIDSKNEDLRQGC 348

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|239790870|dbj|BAH71969.1| ACYPI007470 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242025388|ref|XP_002433106.1| RNA 3' terminal phosphate cyclase, putative [Pediculus humanus corporis] gi|212518647|gb|EEB20368.1| RNA 3' terminal phosphate cyclase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|225711566|gb|ACO11629.1| RNA 3-terminal phosphate cyclase-like protein [Caligus rogercresseyi] Back     alignment and taxonomy information
>gi|156551007|ref|XP_001604756.1| PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|224091272|ref|XP_002195500.1| PREDICTED: RNA 3'-terminal phosphate cyclase-like protein [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|58386084|ref|XP_314471.2| AGAP010498-PA [Anopheles gambiae str. PEST] gi|55240070|gb|EAA09976.2| AGAP010498-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|357610133|gb|EHJ66841.1| hypothetical protein KGM_00069 [Danaus plexippus] Back     alignment and taxonomy information
>gi|327263463|ref|XP_003216539.1| PREDICTED: RNA 3'-terminal phosphate cyclase-like protein-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|195132103|ref|XP_002010483.1| GI15953 [Drosophila mojavensis] gi|193908933|gb|EDW07800.1| GI15953 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query401
UNIPROTKB|G3V7Z1373 Rcl1 "Protein Rcl1" [Rattus no 0.738 0.793 0.531 8.5e-81
UNIPROTKB|Q9Y2P8373 RCL1 "RNA 3'-terminal phosphat 0.738 0.793 0.525 2.2e-80
UNIPROTKB|E2RAG1373 RCL1 "Uncharacterized protein" 0.738 0.793 0.521 2.9e-80
MGI|MGI:1913275373 Rcl1 "RNA terminal phosphate c 0.738 0.793 0.528 3.7e-80
UNIPROTKB|Q2KHX8373 RCL1 "RNA 3'-terminal phosphat 0.738 0.793 0.521 6e-80
UNIPROTKB|E1C1K6374 RCL1 "Uncharacterized protein" 0.745 0.799 0.513 2e-79
FB|FBgn0020909384 Rtc1 "Rtc1" [Drosophila melano 0.740 0.773 0.506 3.3e-79
UNIPROTKB|F1SK46373 RCL1 "Uncharacterized protein" 0.738 0.793 0.518 8.7e-79
ZFIN|ZDB-GENE-040930-11367 rcl1 "RNA terminal phosphate c 0.755 0.825 0.490 1.1e-78
DICTYBASE|DDB_G0282803371 rcl1 "RNA 3'-terminal phosphat 0.778 0.840 0.418 2.1e-68
UNIPROTKB|G3V7Z1 Rcl1 "Protein Rcl1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 158/297 (53%), Positives = 208/297 (70%)

Query:    16 EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
             ++E + +RL+DK+TNG+ +E+N+TGTTL +QPG+L GG ++H+C   RGIGYYLE  L L
Sbjct:    46 DFEASFIRLLDKITNGSRIEINQTGTTLYYQPGLLYGGSVEHDCSVLRGIGYYLEALLCL 105

Query:    76 APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
             APF K  L+IV+RGVTN+Q DPSVD  KA  LP+LKQF +     EL I +RGM P GGG
Sbjct:   106 APFMKHPLKIVLRGVTNDQVDPSVDVLKATALPLLKQFGIDGESFELKILRRGMPPGGGG 165

Query:   136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYL 195
             E+ F+CP+ K +KPVQ  D GKIKRIRG  +++RVSP +ANRIVD+A+GIL  ++PD+Y+
Sbjct:   166 EVLFSCPVRKVLKPVQLTDPGKIKRIRGMAYSVRVSPQMANRIVDSARGILNKFIPDIYI 225

Query:   196 SVDHCXXXXXXXXXXXXXXIYAESSTGVVLTADAVSPPP-PATRTVPETLGEQLAYNLLE 254
               DH               + AE++ G  L+A+  S P       +PE LG   A  LLE
Sbjct:   226 YTDHMKGVNSGKSPGFGLSLVAETTNGTFLSAELASNPQGQGAAVLPEDLGRNCAKLLLE 285

Query:   255 EISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLE 311
             EI RGG VDS+ QSL  L M L Q+DVS++L+GPLSPYT++FLRHLK FF + FK+E
Sbjct:   286 EIYRGGCVDSTSQSLVLLLMTLGQQDVSKVLLGPLSPYTIEFLRHLKSFFQVMFKVE 342
GO:0003824 "catalytic activity" evidence=IEA
GO:0005730 "nucleolus" evidence=IEA
GO:0006396 "RNA processing" evidence=IEA
GO:0042254 "ribosome biogenesis" evidence=IEA
UNIPROTKB|Q9Y2P8 RCL1 "RNA 3'-terminal phosphate cyclase-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAG1 RCL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1913275 Rcl1 "RNA terminal phosphate cyclase-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHX8 RCL1 "RNA 3'-terminal phosphate cyclase-like protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E1C1K6 RCL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0020909 Rtc1 "Rtc1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK46 RCL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040930-11 rcl1 "RNA terminal phosphate cyclase-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282803 rcl1 "RNA 3'-terminal phosphate cyclase family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q08096RCL1_YEASTNo assigned EC number0.34790.69820.7629yesN/A
Q54S38RCL1_DICDINo assigned EC number0.42900.79300.8571yesN/A
Q2KHX8RCL1_BOVINNo assigned EC number0.55700.74060.7962yesN/A
Q9C578RCL1_ARATHNo assigned EC number0.42340.73560.7866yesN/A
Q9Y2P8RCL1_HUMANNo assigned EC number0.56040.74060.7962yesN/A
Q9JJT0RCL1_MOUSENo assigned EC number0.56370.74060.7962yesN/A
P56175RCL1_DROMENo assigned EC number0.53480.74310.7760yesN/A
Q09870RCL1_SCHPONo assigned EC number0.37770.78050.8622yesN/A
Q23400RCL1_CAEELNo assigned EC number0.42470.74060.7836yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
TIGR03400360 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis prot 1e-154
cd00875341 cd00875, RNA_Cyclase_Class_I, RNA 3' phosphate cyc 1e-133
pfam01137330 pfam01137, RTC, RNA 3'-terminal phosphate cyclase 2e-87
COG0430341 COG0430, RCL1, RNA 3'-terminal phosphate cyclase [ 5e-51
cd00295338 cd00295, RNA_Cyclase, RNA 3' phosphate cyclase dom 6e-49
pfam05189101 pfam05189, RTC_insert, RNA 3'-terminal phosphate c 6e-28
TIGR03399326 TIGR03399, RNA_3prim_cycl, RNA 3'-phosphate cyclas 1e-25
cd00874326 cd00874, RNA_Cyclase_Class_II, RNA 3' phosphate cy 4e-22
PRK04204343 PRK04204, PRK04204, RNA 3'-terminal-phosphate cycl 1e-18
TIGR03400360 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis prot 2e-18
cd01553211 cd01553, EPT_RTPC-like, This domain family include 3e-12
COG3283 511 COG3283, TyrR, Transcriptional regulator of aromat 4e-04
>gnl|CDD|234198 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis protein RCL1 Back     alignment and domain information 
 Score =  438 bits (1128), Expect = e-154
 Identities = 157/312 (50%), Positives = 225/312 (72%), Gaps = 2/312 (0%)

Query: 16  EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
           +YEV+ LRL++K+TNG+ +E++ TGTT++++PG++ GG + HEC   RGIGYYLE  L L
Sbjct: 39  DYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHECPTSRGIGYYLEPLLLL 98

Query: 76  APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
           APF KK L I ++G+TN+  DPSVD+ +   LP+LK+F + D G+EL I KRG  P GGG
Sbjct: 99  APFSKKPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLELKILKRGAPPLGGG 158

Query: 136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYL 195
           E+   CP+IK +K +   + G++KRIRG  ++ RVSP++ANR++D A+G+L + LPDVY+
Sbjct: 159 EVELRCPVIKQLKTIHLTERGRVKRIRGVAYSTRVSPSLANRMIDAARGVLNNLLPDVYI 218

Query: 196 SVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLEE 255
           + D  KG  SGKSPG+G S+ AE++ G +++A+AVS   P   ++PE LG++ AY LLEE
Sbjct: 219 TTDVWKGKNSGKSPGYGLSLVAETTNGCIISAEAVS--SPGEPSLPEDLGKRAAYLLLEE 276

Query: 256 ISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESG 315
           I +GG VDS+ Q L  L MAL Q+DVS+L +G LS YTV+FLR +K+FFG+ FKL+ +  
Sbjct: 277 IYKGGCVDSTHQPLALLLMALGQEDVSKLRLGKLSEYTVEFLRDIKEFFGVTFKLKDDKS 336

Query: 316 MVDSSFQSLGCL 327
              S    L C+
Sbjct: 337 DNGSGKVLLTCV 348

Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only. Length = 360
>gnl|CDD|238447 cd00875, RNA_Cyclase_Class_I, RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>gnl|CDD|216322 pfam01137, RTC, RNA 3'-terminal phosphate cyclase Back     alignment and domain information
>gnl|CDD|223507 COG0430, RCL1, RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|238183 cd00295, RNA_Cyclase, RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>gnl|CDD|203195 pfam05189, RTC_insert, RNA 3'-terminal phosphate cyclase (RTC), insert domain Back     alignment and domain information
>gnl|CDD|234197 TIGR03399, RNA_3prim_cycl, RNA 3'-phosphate cyclase Back     alignment and domain information
>gnl|CDD|238446 cd00874, RNA_Cyclase_Class_II, RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>gnl|CDD|235255 PRK04204, PRK04204, RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>gnl|CDD|234198 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>gnl|CDD|238794 cd01553, EPT_RTPC-like, This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>gnl|CDD|225821 COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 401
TIGR03400360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 100.0
KOG3980|consensus361 100.0
TIGR03399326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 100.0
cd00874326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 100.0
PRK04204343 RNA 3'-terminal-phosphate cyclase; Provisional 100.0
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 100.0
cd00875341 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai 100.0
cd00295338 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA 100.0
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 100.0
KOG3980|consensus361 99.92
cd01553211 EPT_RTPC-like This domain family includes the Enol 99.92
PF05189103 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC 99.87
cd00875341 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domai 99.56
TIGR03400360 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Me 99.56
PRK04204343 RNA 3'-terminal-phosphate cyclase; Provisional 99.2
cd00874326 RNA_Cyclase_Class_II RNA 3' phosphate cyclase doma 99.15
PF01137228 RTC: RNA 3'-terminal phosphate cyclase; InterPro: 99.05
TIGR03399326 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members o 99.01
cd00295338 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA 98.91
COG0430341 RCL1 RNA 3'-terminal phosphate cyclase [RNA proces 97.89
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information 
Probab=100.00  E-value=4.6e-91  Score=696.80  Aligned_cols=327  Identities=50%  Similarity=0.876  Sum_probs=313.8

Q ss_pred             cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192          2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK   80 (401)
Q Consensus         2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~   80 (401)
                      .|+|||+ |+||||++||+++|++++++|||+++|++++||+|+|.||.++||+|+|||+|||||+||||++||+++|++
T Consensus        24 ~I~nIR~~R~~PGL~~qhl~~l~l~~~i~~a~~~g~~~gst~l~F~Pg~i~gG~~~~d~gtagSitl~lq~lLp~~lf~~  103 (360)
T TIGR03400        24 RITKIRSDDENPGLRDYEVSFLRLLEKVTNGSKIEISYTGTTVIYKPGLITGGSVTHECPTTRGIGYYLEPLLLLAPFSK  103 (360)
T ss_pred             EEEEeccCCCCCCcHHHHHHHHHHHHHhcCCeEeeeecCceEEEEECCcccCCeEEEeCCCCcchHHHHHHHHHHHhhCC
Confidence            4899999 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192         81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR  160 (401)
Q Consensus        81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~  160 (401)
                      +|++|+|+||||++||||+||+++||+|+|++||++++.++++|.+|||||+|||+|.++++|+++++|++++++|++++
T Consensus       104 ~~~~l~l~GgT~v~~sPsvDy~~~v~lp~l~~~G~~~~~~~l~l~~RG~yP~GgGeV~~~~~p~~~l~~i~l~~~G~v~~  183 (360)
T TIGR03400       104 KPLSITLKGITNSTGDPSVDTIRTATLPLLKKFGIPDEGLELKILKRGAAPLGGGEVELRCPVIKQLKTIHLTERGKVKR  183 (360)
T ss_pred             CCeEEEEEeecCCCCCCCHHHHHHHHHHHHHHcCCCCCceEEEEEeccccCCCCEEEEEEEcCccCccceEEEcCCCcEE
Confidence            99999999999999999999999999999999999433499999999999999999999999999999999999999999


Q ss_pred             EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCC--CCCCC
Q psy13192        161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPP--PPATR  238 (401)
Q Consensus       161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~--g~~~~  238 (401)
                      |+|+++++++|+|+++||+++|++.|+++++|++|+++++++.+++.+||++|+||||+++||++|+++++++  +    
T Consensus       184 irg~~~~~~l~~~v~~r~~~~a~~~L~~~~~~~~i~~~~~~~~~~~~~~G~~i~L~ae~~~g~~~g~~~lg~~~~g----  259 (360)
T TIGR03400       184 IRGVAYSTRVSPSLANRMIDAARGVLNNLLPDVYITTDVRKGKNSGKSPGYGLSLVAETTNGCIISAEAVSSPGEG----  259 (360)
T ss_pred             EEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCcEEEEEecccccCCCCCCeEEEEEEEeCCCEEEEEEeecCCCCC----
Confidence            9999999999999999999999999999999999999877666678899999999999999999999999999  8    


Q ss_pred             CChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEe-c--c-
Q psy13192        239 TVPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEH-E--S-  314 (401)
Q Consensus       239 ~~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~-~--~-  314 (401)
                      .+||+||++||++|++++++|||||+|+|||+++|||||++++|+++++++|+|++|++|++|+|+|++|++++ +  + 
T Consensus       260 ~~aE~vg~~aa~~L~~~i~~gg~vD~~lqdqll~~mALa~~~~S~i~~~~lt~h~~t~l~vi~~f~~v~f~i~~~~~~~~  339 (360)
T TIGR03400       260 SLPEDLGKRAAYLLLEEIYRGGCVDSTHQPLALLLMALGQEDVSKLRLGKLSEYTVEFLRDLKEFFGVTFKIKDDDSENG  339 (360)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCccChhHHHHHHHHHHhCCCCcceEEecCCCHHHHHHHHHHHHhcCCEEEEEEcccCCC
Confidence            99999999999999999999999999999999999999976889999999999999999999999999999986 3  3 


Q ss_pred             -ceeEEeEeEEEEEeeecccc
Q psy13192        315 -GMVDSSFQSLGCLYMALHQK  334 (401)
Q Consensus       315 -g~~~i~~~c~G~g~~n~~~~  334 (401)
                       +.+.++  |.|+||+|++||
T Consensus       340 ~~~~~i~--~~G~G~~n~~~~  358 (360)
T TIGR03400       340 SGKVLLS--CVGIGYTNVSKK  358 (360)
T ss_pred             CceEEEE--EEeeeeeccccc
Confidence             567899  999999999886

Members of this strictly eukaryotic protein family are not RNA 3'-phosphate cyclase (6.5.1.4), but rather a homolog with a distinct function, found in the nucleolus and required for ribosomal RNA processing. Homo sapiens has both a member of this RCL (RNA terminal phosphate cyclase like) family and EC 6.5.1.4, while Saccharomyces has a member of this family only.
>KOG3980|consensus Back     alignment and domain information
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>KOG3980|consensus Back     alignment and domain information
>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) Back     alignment and domain information
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes Back     alignment and domain information
>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 Back     alignment and domain information
>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional Back     alignment and domain information
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) Back     alignment and domain information
>PF01137 RTC: RNA 3'-terminal phosphate cyclase; InterPro: IPR023797 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea Back     alignment and domain information
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase Back     alignment and domain information
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond Back     alignment and domain information
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3pqv_A365 Cyclase Homolog Length = 365 2e-45
3kgd_A358 Crystal Structure Of E. Coli Rna 3' Cyclase Length 3e-04
1qmh_A347 Crystal Structure Of Rna 3'-Terminal Phosphate Cycl 4e-04
3tut_A358 Crystal Structure Of Rtca.Atp Binary Complex Length 4e-04
>pdb|3PQV|A Chain A, Cyclase Homolog Length = 365 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/299 (34%), Positives = 171/299 (57%), Gaps = 9/299 (3%)
Query: 16  EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
           +YEV+ LRL++ +TNG+++E++ TGTT++F+PGI+ GG   H+C   + +GY+ E  L L
Sbjct: 47  DYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQCPNSKPVGYFAEPMLYL 106
Query: 76  APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
           APF KK   I+ RG+T++  D  +D+ K G +P++++F V +  +  +  KRG  P GGG
Sbjct: 107 APFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRECALHTL--KRGSPPLGGG 164
Query: 136 EIYFNC-PIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVY 194
           E++     +I     + + D   I  IRG  ++ RVSP++ NR++D AK +L S   +V 
Sbjct: 165 EVHLVVDSLIAQPITMHALDKTMISSIRGVSYSTRVSPSLVNRMIDGAKKVLKSASCEVN 224
Query: 195 LSVDHCXXXXXXXXXXXXXXIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLLE 254
           ++ D                + AE+  G  + ++A+         VPE +G  +AY+LLE
Sbjct: 225 ITADVWRGENSGKSPGWGLTLVAENKQGWRIFSEAIGDAG----DVPEDIGASVAYHLLE 280
Query: 255 EISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGP--LSPYTVQFLRHLKQFFGLKFKLE 311
           EIS+ G+V  +   L  LYM + ++D+ +L I    +    V  LR +K+ FG +  L+
Sbjct: 281 EISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLRDIKKVFGTEILLK 339
>pdb|3KGD|A Chain A, Crystal Structure Of E. Coli Rna 3' Cyclase Length = 358 Back     alignment and structure
>pdb|1QMH|A Chain A, Crystal Structure Of Rna 3'-Terminal Phosphate Cyclase, An Ubiquitous Enzyme With Unusual Topology Length = 347 Back     alignment and structure
>pdb|3TUT|A Chain A, Crystal Structure Of Rtca.Atp Binary Complex Length = 358 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query401
3pqv_A365 RCL1 protein; RTC-like, cyclase-like, modular, alp 6e-90
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 1e-74
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Length = 365 Back     alignment and structure
 Score =  275 bits (704), Expect = 6e-90
 Identities = 111/304 (36%), Positives = 181/304 (59%), Gaps = 9/304 (2%)

Query: 15  HEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLA 74
            +YEV+ LRL++ +TNG+++E++ TGTT++F+PGI+ GG   H+C   + +GY+ E  L 
Sbjct: 46  KDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQCPNSKPVGYFAEPMLY 105

Query: 75  LAPFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGG 134
           LAPF KK   I+ RG+T++  D  +D+ K G +P++++F V +    L   KRG  P GG
Sbjct: 106 LAPFSKKKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVRE--CALHTLKRGSPPLGG 163

Query: 135 GEIYFNC-PIIKSIKPVQSKDMGKIKRIRGTVFALRVSPAIANRIVDTAKGILLSYLPDV 193
           GE++     +I     + + D   I  IRG  ++ RVSP++ NR++D AK +L S   +V
Sbjct: 164 GEVHLVVDSLIAQPITMHALDKTMISSIRGVSYSTRVSPSLVNRMIDGAKKVLKSASCEV 223

Query: 194 YLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTVPETLGEQLAYNLL 253
            ++ D  +G  SGKSPG+G ++ AE+  G  + ++A+         VPE +G  +AY+LL
Sbjct: 224 NITADVWRGENSGKSPGWGLTLVAENKQGWRIFSEAIGDA----GDVPEDIGASVAYHLL 279

Query: 254 EEISRGGMVDSSFQSLGCLYMALHQKDVSQLLI--GPLSPYTVQFLRHLKQFFGLKFKLE 311
           EEIS+ G+V  +   L  LYM + ++D+ +L I    +    V  LR +K+ FG +  L+
Sbjct: 280 EEISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLRDIKKVFGTEILLK 339

Query: 312 HESG 315
               
Sbjct: 340 PVDD 343
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Length = 358 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
3pqv_A365 RCL1 protein; RTC-like, cyclase-like, modular, alp 100.0
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 100.0
3pqv_A365 RCL1 protein; RTC-like, cyclase-like, modular, alp 99.76
3tut_A358 RNA 3'-terminal phosphate cyclase; cyclase family, 99.04
3r38_A454 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; 84.13
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Back     alignment and structure
Probab=100.00  E-value=3.1e-90  Score=689.50  Aligned_cols=325  Identities=35%  Similarity=0.597  Sum_probs=306.4

Q ss_pred             cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192          2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK   80 (401)
Q Consensus         2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~   80 (401)
                      .|+|||+ |+||||++||+++|++++++|||+++|++++||+|+|.||.++||+|+|||+|||||+|+||++||+++|++
T Consensus        32 rI~nIRa~r~~PGL~~qhls~l~ll~~itng~v~g~~~gst~l~F~Pg~i~gG~~~~d~~tagSi~l~l~~lL~~a~f~~  111 (365)
T 3pqv_A           32 KIEKIRSDDLNPGLKDYEVSFLRLMEAVTNGSSIEISYTGTTVIFRPGIITGGSYTHQCPNSKPVGYFAEPMLYLAPFSK  111 (365)
T ss_dssp             EEESSSTTSSSCSCCHHHHHHHHHHHHHEESCEEEECTTSSCEEEECCEECCEEEEEECCTTSCHHHHHGGGGGTGGGSS
T ss_pred             EEEEecCCCCCCCccHHHHHHHHHHHHHhCceEeeeecCCcEEEEECCcccCCeEEEECCCCcchHHHHHHHHHHHhcCC
Confidence            4899999 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCC-CCCcceEeccCCcee
Q psy13192         81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPII-KSIKPVQSKDMGKIK  159 (401)
Q Consensus        81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~-~~L~~i~l~~~G~i~  159 (401)
                      +|++|+|+||||++||||+||+++||+|+|++||++  +++++|.||||||.|||||+++|+|+ +.++|++++++|+++
T Consensus       112 ~p~~l~l~GgTn~~~sPsvDy~~~v~lP~l~~fG~~--~~~l~i~rRG~~P~GGGeV~~~v~p~~~~l~~i~l~~~G~i~  189 (365)
T 3pqv_A          112 KKFSILFRGITSSHNDAGIDAIKWGLMPIMEKFGVR--ECALHTLKRGSPPLGGGEVHLVVDSLIAQPITMHALDKTMIS  189 (365)
T ss_dssp             SCEEEEEEECCCCSSSCCHHHHHHTTHHHHHHTTCC--SCEEEEEECCCTTTCCEEEEEEECCCCSSCCCCEECSCCCCC
T ss_pred             CcEEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEEEecCCCCCCCeEEEEEEeCccccCCcceeecCCceE
Confidence            999999999999999999999999999999999995  59999999999999999999999765 679999999999999


Q ss_pred             EEEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCC
Q psy13192        160 RIRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRT  239 (401)
Q Consensus       160 ~IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~  239 (401)
                      +|||+++++++|+|+++||+++|++.|+++++|++|++|+.++.+++.+||++|+|||||++||++++|+++++|    .
T Consensus       190 ~IrG~a~~~~v~~~~a~R~~~~a~~~L~~~~~dv~I~~d~~~~~~~~~spG~gi~L~Aet~~g~~~~~~~lg~~g----~  265 (365)
T 3pqv_A          190 SIRGVSYSTRVSPSLVNRMIDGAKKVLKSASCEVNITADVWRGENSGKSPGWGLTLVAENKQGWRIFSEAIGDAG----D  265 (365)
T ss_dssp             EEEEEEEEESSCTHHHHHHHHHHHHHSTTCSSEECCEEEEECSGGGCSSCEEEEEEEEECTTSCEEEEEEEECTT----C
T ss_pred             EEEEEEEecCCCHHHHHHHHHHHHHHHhhcCCCccEEEeeccccccCCCCceEEEEEEEECCCEEEEEehhccCC----C
Confidence            999999999999999999999999999999999999999888766788999999999999999999999999999    9


Q ss_pred             ChHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecC--CChHHHHHHHHHHHHcCcEEEEEe---cc
Q psy13192        240 VPETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGP--LSPYTVQFLRHLKQFFGLKFKLEH---ES  314 (401)
Q Consensus       240 ~aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~--lT~h~~t~l~vi~~flgv~f~i~~---~~  314 (401)
                      +||+||++||++|+++|++|||||+|+|||+++|||||++|+|++++|+  +|++++..++.+++|||++|++++   ++
T Consensus       266 ~aE~vg~~aa~~Ll~~i~~gg~VD~~lqdqli~~mALa~~~vs~i~~g~~~lt~~~i~~lr~l~~~fgv~f~i~~~~~~~  345 (365)
T 3pqv_A          266 VPEDIGASVAYHLLEEISKSGVVGRNQLPLTILYMIIGKEDIGRLRITKDQIDERFVWLLRDIKKVFGTEILLKPVDDNT  345 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCSSSCGGGHHHHHHHHHTSSSSEEEEEECGGGCSHHHHHHHHHHHHHHCCCCEEEECSSSS
T ss_pred             CHHHHHHHHHHHHHHHHHcCCccchhhHHHHHHHHHhCCCCcceEEeCCCCCCHHHHHHHHHHHHhhCcEEEEEecCCCC
Confidence            9999999999999999999999999999999999999987899999994  799999999999999999999987   24


Q ss_pred             ceeEEeEeEEEEEeeecccc
Q psy13192        315 GMVDSSFQSLGCLYMALHQK  334 (401)
Q Consensus       315 g~~~i~~~c~G~g~~n~~~~  334 (401)
                      +.++++  |.|+||.|++||
T Consensus       346 ~~~ii~--c~G~G~~N~~~~  363 (365)
T 3pqv_A          346 TDLIAT--IKGIGFTNTNKK  363 (365)
T ss_dssp             SCEEEE--EECCCC------
T ss_pred             CeEEEE--EEEEeccccccc
Confidence            678999  999999999886
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
>3pqv_A RCL1 protein; RTC-like, cyclase-like, modular, alpha-beta, anion pocket, R biogenesis, unknown function; HET: TAR; 2.61A {Kluyveromyces lactis} Back     alignment and structure
>3tut_A RNA 3'-terminal phosphate cyclase; cyclase family, cyclization of RNA 3'-phosphate ENDS, transf; HET: ATP; 1.58A {Escherichia coli} PDB: 3tux_A* 3tv1_A* 3tw3_A* 3kgd_A* 1qmh_A* 1qmi_A Back     alignment and structure
>3r38_A UDP-N-acetylglucosamine 1-carboxyvinyltransferase; biosynthesis and degradation of murein sacculus and peptidog infectious diseases; 2.23A {Listeria monocytogenes} PDB: 3sg1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 401
d1qmha2239 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosp 8e-47
d1qmha195 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyc 9e-16
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Length = 239 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: RNA 3'-terminal phosphate cyclase, RPTC
domain: RNA 3'-terminal phosphate cyclase, RPTC
species: Escherichia coli [TaxId: 562]

 Score =  158 bits (401), Expect = 8e-47
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 9/192 (4%)

Query: 16  EYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLAL 75
              +  ++   ++   T          L+F+PG + GG  +            L+  L  
Sbjct: 46  RQHLTAVKAATEICGATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPA 105

Query: 76  APFCKKGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGG 135
             F     ++ + G T+N   P  D  +    P+L +  +     +  + + G  P GGG
Sbjct: 106 LWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGI---HQQTTLLRHGFYPAGGG 162

Query: 136 EIYFNCPIIKSIKPVQSKDMGKIKRIRGTVF-----ALRVSPAIANRIVDTAKGILLSYL 190
            +      + S   +Q   +G+    +  +      A   + A  +  + T   ++  +L
Sbjct: 163 VVATEVSPVASFNTLQLGAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFL 222

Query: 191 PDVYLSVDHCKG 202
           P V  S+    G
Sbjct: 223 P-VRFSLIETDG 233
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query401
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 100.0
d1qmha195 RNA 3'-terminal phosphate cyclase, RPTC, insert do 99.72
d1qmha2239 RNA 3'-terminal phosphate cyclase, RPTC {Escherich 95.29
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: EPT/RTPC-like
family: RNA 3'-terminal phosphate cyclase, RPTC
domain: RNA 3'-terminal phosphate cyclase, RPTC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.4e-57  Score=422.14  Aligned_cols=207  Identities=17%  Similarity=0.237  Sum_probs=195.2

Q ss_pred             cccccee-cCCCCchHHHHHHHHHHHHhhCCeeeeeeccceEEEEECCcccceeEEEeCCCCcchhhhHHHHhhhhccCC
Q psy13192          2 SSYDIKV-HSNWCQHEYEVNLLRLIDKLTNGTTLEVNETGTTLVFQPGILVGGLIQHECCKERGIGYYLEVCLALAPFCK   80 (401)
Q Consensus         2 ~~~~ir~-r~~PGL~~qhl~~l~ll~~it~g~~~~~~~~st~l~F~PG~i~gg~~~~d~~tagSisl~lQ~lLplllfa~   80 (401)
                      .|+|||+ |+||||++||+++|++++++|||++++++++||+|+|.||.+++|+|+|||+|||||+||||++||+++|++
T Consensus        31 ~I~nIR~~r~~PGL~~qh~~~l~l~~~i~~~~~~g~~~gst~l~f~Pg~i~~g~~~~~~~tagsi~l~lq~llp~~~f~~  110 (239)
T d1qmha2          31 TITSIRAGRAKPGLLRQHLTAVKAATEICGATVEGAELGSQRLLFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPALWFAD  110 (239)
T ss_dssp             EEESTTTTBSSCSCCHHHHHHHHHHHHHHTCEEECCSTTCCCEEEECCCCCCEEEEEEEEEEEEHHHHHHHHHHHHTTSS
T ss_pred             EEEEecCCCCCCCchHHHHHHHHHHHHHhCCeEeeeecCcEEEEEECCcccCCeEEEecCCCcchhHHHHHHHHHHhhCC
Confidence            4799999 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEeccCCCCCCCHHHHHHhhHHHHhhcCCCCCceEEEEeeecccCCCCcEEEEEeeCCCCCcceEeccCCceeE
Q psy13192         81 KGLQIVMRGVTNNQKDPSVDSFKAGGLPVLKQFLVVDPGIELIIKKRGMEPEGGGEIYFNCPIIKSIKPVQSKDMGKIKR  160 (401)
Q Consensus        81 ~~~~Itl~GgT~~~~sPs~dy~~~v~lplL~k~G~~~~~~~i~i~~rGf~P~GGGeV~~~~~p~~~L~~i~l~~~G~i~~  160 (401)
                      +|++|+|+||||++||||+||+++||+|+|++||++   +++++.+|||||+|||+|.++|+|+++++|+++.       
T Consensus       111 ~~~~l~l~GgT~~~~~psvd~~~~v~lp~l~~~G~~---~~~~i~~rG~~P~GGG~v~~~~~p~~~l~~i~l~-------  180 (239)
T d1qmha2         111 GPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIH---QQTTLLRHGFYPAGGGVVATEVSPVASFNTLQLG-------  180 (239)
T ss_dssp             SCEEEEEEEECBBTTBCCTHHHHHTHHHHHHHTTCE---EEEEEEECCBTTCCCEEEEEEEECCSCCCCCBCC-------
T ss_pred             CCeEEEEEcccCCCCCCCHHHHHHHHHHHHHHcCCC---eEEEEEecccCCCCCeEEEEEEeccccccceeec-------
Confidence            999999999999999999999999999999999987   9999999999999999999999999999998863       


Q ss_pred             EEEEEEecccChHHHHHHHHHHHHHhhhcCCCeeEEeecccCCCCCCCCceEEEEEEEecCceEEeeeeccCCCCCCCCC
Q psy13192        161 IRGTVFALRVSPAIANRIVDTAKGILLSYLPDVYLSVDHCKGPKSGKSPGFGGSIYAESSTGVVLTADAVSPPPPATRTV  240 (401)
Q Consensus       161 IrGi~~~~~l~~~ia~r~~~~ar~~L~~~~~~v~i~~d~~~~~~~~~~pG~~i~L~aet~~g~~~g~~~l~~~g~~~~~~  240 (401)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (239)
T d1qmha2         181 --------------------------------------------------------------------------------  180 (239)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCCchhhHHHHHhcCCCcceEEecCCChHHHHHHHHHHHHcCcEEEEEeccceeEEe
Q psy13192        241 PETLGEQLAYNLLEEISRGGMVDSSFQSLGCLYMALHQKDVSQLLIGPLSPYTVQFLRHLKQFFGLKFKLEHESGMVDSS  320 (401)
Q Consensus       241 aE~vg~~aa~~Ll~~i~~g~~VD~~~qdqll~~mALa~~g~S~i~~g~lT~h~~t~l~vi~~flgv~f~i~~~~g~~~i~  320 (401)
                                          .++++++||++.|||+|  +.+.+++.+.+.|+.||+|++++|++++|++++.+|.+.++
T Consensus       181 --------------------~~G~~~adq~i~~~alA--g~~~~svae~~~h~~Tni~Vierflpv~f~i~~~~g~~~v~  238 (239)
T d1qmha2         181 --------------------AVGEYLADQLVLPMALA--GAGEFTVAHPSCHLLTNIAVVERFLPVRFSLIETDGVTRVS  238 (239)
T ss_dssp             --------------------SSCHHHHHHHHHHHHHH--TCCEEEESSCCHHHHHHHHHHHHHSSCCCEEEECSSCEEEE
T ss_pred             --------------------cCCceeeeeeeeeehee--ccCCchHhhhhhhhhHhHHHHHhcCCceEEEEecCCeEEEe
Confidence                                13467889999999999  47899999999999999999999999999999866665544
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qmha2 d.68.2.1 (A:5-184,A:280-338) RNA 3'-terminal phosphate cyclase, RPTC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure