Psyllid ID: psy13292

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MAPSVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHccHcccccEEcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccEEEccccccccccccccccccEEcccEHEHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mapsvqyaidptllpfaakgplhtppienyecpdgdytdvSRNFEKEYRDRKAALEEILNKnkkphqrkkirsralpplseEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQidptllpfaakgplhtppienyecpdgdytdvSRNFEKEYRDRKAALEEILNKnkkphqrkk
Flexible Loop (DISEMBL)
MAPSVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEilnknkkphqrkkirsralpplseevIESRSnlikewgiyrskeaqkdyklIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEeilnknkkphqrkk
Low Complexity Region (SEG)
MAPSVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKK
Disordered region (IsUnstruct)
******YAIDPTLLPFAAKGPLHTPPIENYECP*******************************************************NLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDY*********************************
Disordered Region (DISOPRED)
*****QYAIDPTLLPFAAKGPLHTPP********************************************************VIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAA****************
Disordered Region (DISEMBL)
MAPSVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKN***********RALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNK*********
Disordered Region (DISPRO)
**PSVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNK*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPSVQYAIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLxxxxxxxxxxxxxxxxxxxxxAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKEYRDRKAALEEILNKNKKPHQRKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q9Z2Q5	206	39S ribosomal protein L40	yes	N/A	0.469	0.451	0.430	5e-17
P83565	206	39S ribosomal protein L40	yes	N/A	0.469	0.451	0.419	2e-16
Q9NQ50	206	39S ribosomal protein L40	yes	N/A	0.520	0.5	0.417	2e-16

>sp|Q9Z2Q5|RM40_MOUSE 39S ribosomal protein L40, mitochondrial OS=Mus musculus GN=Mrpl40 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 63/93 (67%)

Query: 80  SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
           S E  E R+ L+K W +++ +E + +   I  ++ +QQ AL+EL+LES ELY EAI+ D 
Sbjct: 107 SPEESERRALLLKRWALFKQQEHEMERDAIRSMLEAQQEALEELKLESAELYAEAIKRDT 166

Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
           +L PF  +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 167 SLFPFEKEGPHYTPPISNYQAPEGRYNDITKVY 199

Mus musculus (taxid: 10090)

>sp|P83565|RM40_RAT 39S ribosomal protein L40, mitochondrial OS=Rattus norvegicus GN=Mrpl40 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 63/93 (67%)

Query: 80  SEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDP 139
           S E  E R+ L+K W +Y+ +E + +   I  ++ +QQ AL++L+LES ELY EAI+ D 
Sbjct: 107 SFEESERRALLLKRWALYKQQEHEMERDAIRAMLEAQQEALEQLKLESTELYAEAIKRDT 166

Query: 140 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
           +L PF  +GP +TPP+ NY+ P+G Y D+++ +
Sbjct: 167 SLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVY 199

Rattus norvegicus (taxid: 10116)

>sp|Q9NQ50|RM40_HUMAN 39S ribosomal protein L40, mitochondrial OS=Homo sapiens GN=MRPL40 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 68/103 (66%)

Query: 70  KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
           K R R    L+ E  E R+ L+K+W +Y+ +E + +   I  ++ +QQ AL+EL+LES +
Sbjct: 97  KARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPK 156

Query: 130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
           L+ EAI+ DP L PF  +GP +TPPI NY+ P+G Y D+++ +
Sbjct: 157 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVY 199

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
91094201	178	PREDICTED: similar to mitochondrial ribo	0.530	0.589	0.580	7e-28
322792324	192	hypothetical protein SINV_06016 [Solenop	0.666	0.687	0.492	5e-27
157116778	201	mitochondrial ribosomal protein, L40, pu	0.858	0.845	0.395	1e-26
307204883	174	39S ribosomal protein L40, mitochondrial	0.540	0.614	0.560	1e-26
307189827	203	39S ribosomal protein L40, mitochondrial	0.540	0.527	0.570	7e-26
156551151	203	PREDICTED: 39S ribosomal protein L40, mi	0.550	0.536	0.513	2e-25
332018279	203	39S ribosomal protein L40, mitochondrial	0.530	0.517	0.560	7e-25
119115354	197	AGAP000110-PA [Anopheles gambiae str. PE	0.515	0.517	0.549	1e-24
195111124	189	GI22697 [Drosophila mojavensis] gi|19391	0.515	0.539	0.539	4e-23
194743450	198	GF16858 [Drosophila ananassae] gi|190627	0.515	0.515	0.519	6e-23

>gi|91094201|ref|XP_971553.1| PREDICTED: similar to mitochondrial ribosomal protein, L40, putative [Tribolium castaneum] gi|270010911|gb|EFA07359.1| hypothetical protein TcasGA2_TC015959 [Tribolium castaneum]

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 79/105 (75%)

Query: 69  KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
           KK R R+LP LS+  +E R+ L K+W  YR  E   D +++DR+ ++QQ+ALDELR ESE
Sbjct: 74  KKSRMRSLPALSDSELEQRALLDKQWATYRKNEHLTDVQMLDRIFFAQQKALDELRKESE 133

Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
           ELYQEA+QID  LLPF ++GPL TP I+NYE PDGDY DVS+ +E
Sbjct: 134 ELYQEAMQIDFRLLPFKSEGPLETPAIDNYESPDGDYADVSKKWE 178

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792324|gb|EFZ16308.1| hypothetical protein SINV_06016 [Solenopsis invicta]

 Score =  126 bits (316), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 93/134 (69%), Gaps = 2/134 (1%)

Query: 42  RNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKE 101
           R  EK+ +  K   E  L    K  + +  R R LPP+S+E  E+R  L K+W  Y+S++
Sbjct: 60  RRLEKQAKQLKPVFE--LEIPSKLIEERNQRLRKLPPISKEEEEARILLQKDWNRYKSQQ 117

Query: 102 AQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECP 161
           +  + + +D ++YSQQRALDELR+ESEELYQEAIQ+D  LLP+ AKGPL TP I+NY+ P
Sbjct: 118 SMANVQAVDSILYSQQRALDELRMESEELYQEAIQLDLGLLPYTAKGPLKTPVIKNYDSP 177

Query: 162 DGDYTDVSRNFEKE 175
           DG+YT+++R F+ E
Sbjct: 178 DGEYTNLTRKFDGE 191

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157116778|ref|XP_001658631.1| mitochondrial ribosomal protein, L40, putative [Aedes aegypti] gi|108876312|gb|EAT40537.1| AAEL007762-PA [Aedes aegypti]

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 109/197 (55%), Gaps = 27/197 (13%)

Query: 1   MAPSVQYAIDPTLLPFAAKGPLHTPPIENYE-----CPD----GDYTDVSRNFEKEYRDR 51
           + P+  +++  T   F A   LHT  I+N+      C +        D     ++E R R
Sbjct: 8   LRPATHFSLAKT---FLASRLLHTGAIQNFRFTPILCAEPLKKKKKIDPQIIKQREERKR 64

Query: 52  KAALEEILNKNKKPHQRK---------------KIRSRALPPLSEEVIESRSNLIKEWGI 96
           K   ++I    K   Q K               K R R    +S EV+ESR  L K+W  
Sbjct: 65  KRLEKQIRRLEKNARQLKPVEELEVPMELLDEQKQRKRTGIKVSPEVVESRVLLEKQWAK 124

Query: 97  YRSKEAQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIE 156
           YR ++  +DY+LIDR++ +Q +AL+ELRLESEELYQ+A+Q+D  L+PF A GP+ TPPIE
Sbjct: 125 YRMEQKLQDYQLIDRVLAAQTKALNELRLESEELYQKAVQVDEGLVPFKAVGPVATPPIE 184

Query: 157 NYECPDGDYTDVSRNFE 173
            YE PDG+Y DVS+ FE
Sbjct: 185 GYEMPDGEYLDVSKKFE 201

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204883|gb|EFN83438.1| 39S ribosomal protein L40, mitochondrial [Harpegnathos saltator]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 76/107 (71%)

Query: 69  KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
           +K R R   PLS E +ESR  L KEW  Y++ +   D++ ID ++YSQQ+ALDELR ESE
Sbjct: 67  RKQRLRNSSPLSAEEVESRVLLQKEWNRYKNNQYLADFQTIDSMLYSQQKALDELRAESE 126

Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
           ELYQEAIQ+D   LP+  KGPL TPPIENY  PDG+Y + +R +E E
Sbjct: 127 ELYQEAIQVDLAFLPYVVKGPLKTPPIENYNSPDGEYVNTTRKYEGE 173

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189827|gb|EFN74099.1| 39S ribosomal protein L40, mitochondrial [Camponotus floridanus]

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 79/107 (73%)

Query: 69  KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
           KK R R LP LSEE +ESR  L KEW  Y++++   + ++ID + YSQQ+ALDELR ESE
Sbjct: 96  KKKRLRQLPKLSEEEVESRILLQKEWSRYKTQQHLNNVQIIDSIFYSQQKALDELRAESE 155

Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
           +LYQEAI  D  LLP+ AKGPL TP IENY+ PDG+Y +++R F+ E
Sbjct: 156 QLYQEAIHRDFKLLPYTAKGPLKTPAIENYDSPDGNYINMTRKFDGE 202

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551151|ref|XP_001604544.1| PREDICTED: 39S ribosomal protein L40, mitochondrial-like [Nasonia vitripennis]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 79/109 (72%)

Query: 67  QRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLE 126
           Q   IR R LP L+ E +E R+ L KEW  Y++K+  +  +LIDR +++Q +A+ EL+  
Sbjct: 94  QELGIRKRDLPALTTETLEERAALFKEWNKYKTKQHYQTLRLIDRYMFAQDKAISELKEV 153

Query: 127 SEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
           SEELY+ AIQIDP LLP++ KGPL+T PIE++E PDGDY DV++ +E E
Sbjct: 154 SEELYEAAIQIDPDLLPYSRKGPLNTAPIEDFEAPDGDYQDVTKKYEGE 202

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018279|gb|EGI58884.1| 39S ribosomal protein L40, mitochondrial [Acromyrmex echinatior]

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 77/107 (71%)

Query: 69  KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
           K+ R R LP +SEE +ES+  L KEW  Y+S++   + + ID + YSQQ+ALDELR ESE
Sbjct: 96  KEQRLRKLPSISEEEMESKILLQKEWNRYKSQQHLANIQAIDSIFYSQQKALDELRAESE 155

Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEKE 175
           +LYQEA+Q D  LLP   KGPL TPPIENY  PDG+YT+ +R F+ E
Sbjct: 156 DLYQEAVQPDLGLLPHTVKGPLKTPPIENYNSPDGEYTNTTRKFDGE 202

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119115354|ref|XP_311037.3| AGAP000110-PA [Anopheles gambiae str. PEST] gi|116130795|gb|EAA06344.3| AGAP000110-PA [Anopheles gambiae str. PEST]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 76/102 (74%)

Query: 72  RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
           R R +P  + E++ESR+ L K+W  YR +E   DY+L DR++ +Q +AL EL+L S+ELY
Sbjct: 96  RKRNVPKPTAELLESRALLEKQWAKYRMQEKLADYQLFDRIVAAQAKALGELQLASDELY 155

Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
           Q AIQ DP LLPF A+GP+ TPPI++YE PDG+Y DVSR +E
Sbjct: 156 QRAIQPDPALLPFVAQGPVSTPPIKDYEQPDGEYIDVSRKWE 197

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195111124|ref|XP_002000129.1| GI22697 [Drosophila mojavensis] gi|193916723|gb|EDW15590.1| GI22697 [Drosophila mojavensis]

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 71/102 (69%)

Query: 72  RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
           R R L PLS E IE R+ L K+W  Y+ ++   D+++IDRL+ SQ +AL+ELR ESEELY
Sbjct: 88  RERKLAPLSAEEIEHRALLKKQWAQYKHEQKVADFQIIDRLVQSQNKALEELRCESEELY 147

Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
           Q AI ID TLLP + KGP+ TPPI+ Y  PDGDY   +  +E
Sbjct: 148 QAAIAIDTTLLPVSVKGPVATPPIKGYISPDGDYIHQAMKWE 189

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743450|ref|XP_001954213.1| GF16858 [Drosophila ananassae] gi|190627250|gb|EDV42774.1| GF16858 [Drosophila ananassae]

 Score =  112 bits (281), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 71/102 (69%)

Query: 72  RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
           R R L PL    +E R+ L K+W  ++ +E   D+++IDRL+ +Q +AL ELR ESEELY
Sbjct: 95  RQRKLTPLGNAELEERALLKKQWAHFKHEERVADFQIIDRLVQAQNKALAELRSESEELY 154

Query: 132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFE 173
           Q AI++DP LLP A KGP+ TPPI+NY+ PDGDY   S  +E
Sbjct: 155 QAAIEVDPQLLPVAVKGPVATPPIKNYDSPDGDYVHQSMKWE 196

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
FB|FBgn0037892	196	mRpL40 "mitochondrial ribosoma	0.656	0.663	0.462	2.6e-24
UNIPROTKB|E1BZC7	191	LOC100858795 "Uncharacterized	0.813	0.842	0.359	7.2e-20
UNIPROTKB|Q9NQ50	206	MRPL40 "39S ribosomal protein	0.838	0.805	0.315	3.1e-19
MGI|MGI:1332635	206	Mrpl40 "mitochondrial ribosoma	0.838	0.805	0.321	4e-19
UNIPROTKB|F8WBK5	162	MRPL40 "39S ribosomal protein	0.545	0.666	0.403	6.5e-19
RGD|1565444	206	Mrpl40 "mitochondrial ribosoma	0.838	0.805	0.315	8.3e-19
ZFIN|ZDB-GENE-040912-37	200	mrpl40 "mitochondrial ribosoma	0.5	0.495	0.434	4.6e-18
UNIPROTKB|F1RK59	206	MRPL40 "Uncharacterized protei	0.838	0.805	0.309	5.8e-18
UNIPROTKB|F1N1R3	206	Bt.40326 "Uncharacterized prot	0.838	0.805	0.304	1.8e-16
WB|WBGene00018793	189	mrpl-40 [Caenorhabditis elegan	0.510	0.534	0.415	3.8e-14

FB|FBgn0037892 mRpL40 "mitochondrial ribosomal protein L40" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 61/132 (46%), Positives = 83/132 (62%)

Query:    42 RNFEKEYRDRKAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKE 101
             R  EK  R  K  ++E+    +   ++ K R R L PL+ + +E R+ L K+W  Y+  E
Sbjct:    65 RRLEKNARQLKP-VDELEVPLELIDEKDK-RQRKLAPLTIDQLEERALLKKQWAHYKHDE 122

Query:   102 AQKDYKLIDRLIYSQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECP 161
                D+++IDRL+ +Q +AL ELR ESEELYQ AI IDP LLP A KGP+ TPPI++Y  P
Sbjct:   123 RVADFQIIDRLVQAQNKALAELRRESEELYQAAIDIDPQLLPVAVKGPVATPPIKDYVSP 182

Query:   162 DGDYTDVSRNFE 173
             DGDY   S  +E
Sbjct:   183 DGDYLHQSMKWE 194

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E1BZC7 LOC100858795 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 59/164 (35%), Positives = 90/164 (54%)

Query:    10 DPTLLPFAAKGPLHTPPIENYEC-PDGDYTDVSRNFEKEYRDRKAALEEI-LNKNKKPHQ 67
             D ++L   A  P    P +  +  P  +     R  +K  +  KAA E I +   + P +
Sbjct:    24 DTSVLAGRASLPARAQPKKKKKVDPKREQAQKDRVKKKIKKLEKAAPELIPIEDFETPLK 83

Query:    68 -RKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLE 126
                  R R+LPPLS E  E R  L+K+W +Y+ ++ + + + I  L+ +QQ AL ELRLE
Sbjct:    84 FSDSNRVRSLPPLSFEETERRVLLMKKWSLYKQQQDKAEKEAIQSLVEAQQEALKELRLE 143

Query:   127 SEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSR 170
             SEELYQ A++ D  L PF   GP +TPP+  Y+ P+G   D+++
Sbjct:   144 SEELYQAAVRRDEELFPFERDGPNYTPPLPGYDPPEGKCIDITK 187

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9NQ50 MRPL40 "39S ribosomal protein L40, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 54/171 (31%), Positives = 95/171 (55%)

Query:    12 TLLPFAAKGPLHTPPIENYECPDGDYT-DVSRNFEKEYRDRKAALEEILNKNKKPHQRK- 69
             +LL F    P+ + P+   +  D     +     +++ R  + A +E++         K 
Sbjct:    35 SLLSFWELIPMRSEPLRKKKKVDPKKDQEAKERLKRKIRKLEKATQELIPIEDFITPLKF 94

Query:    70 --KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLES 127
               K R R    L+ E  E R+ L+K+W +Y+ +E + +   I  ++ +QQ AL+EL+LES
Sbjct:    95 LDKARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLES 154

Query:   128 EELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK-EYR 177
              +L+ EAI+ DP L PF  +GP +TPPI NY+ P+G Y D+++ + + E++
Sbjct:   155 PKLHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVYTQVEFK 205

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

MGI|MGI:1332635 Mrpl40 "mitochondrial ribosomal protein L40" [Mus musculus (taxid:10090)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 55/171 (32%), Positives = 94/171 (54%)

Query:    12 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRN-FEKEYRDRKAALEEILNKNK--KPHQ- 67
             +LL F    P+   P+   +  D      +++  +K  R  + A +E++       P + 
Sbjct:    35 SLLAFWDLIPMRAEPLRKKKKVDPRKDQAAKDRLKKRIRKLEKASQELIPIEDFITPVRF 94

Query:    68 RKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLES 127
               K R R     S E  E R+ L+K W +++ +E + +   I  ++ +QQ AL+EL+LES
Sbjct:    95 LDKSRQRPQEEHSPEESERRALLLKRWALFKQQEHEMERDAIRSMLEAQQEALEELKLES 154

Query:   128 EELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK-EYR 177
              ELY EAI+ D +L PF  +GP +TPPI NY+ P+G Y D+++ + + E++
Sbjct:   155 AELYAEAIKRDTSLFPFEKEGPHYTPPISNYQAPEGRYNDITKVYTQVEFK 205

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F8WBK5 MRPL40 "39S ribosomal protein L40, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 44/109 (40%), Positives = 72/109 (66%)

Query:    70 KIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEE 129
             K R R    L+ E  E R+ L+K+W +Y+ +E + +   I  ++ +QQ AL+EL+LES +
Sbjct:    53 KARERPQVELTFEETERRALLLKKWSLYKQQERKMERDTIRAMLEAQQEALEELQLESPK 112

Query:   130 LYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK-EYR 177
             L+ EAI+ DP L PF  +GP +TPPI NY+ P+G Y D+++ + + E++
Sbjct:   113 LHAEAIKRDPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVYTQVEFK 161

GO:0005761 "mitochondrial ribosome" evidence=IEA

RGD|1565444 Mrpl40 "mitochondrial ribosomal protein L40" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 54/171 (31%), Positives = 94/171 (54%)

Query:    12 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRN-FEKEYRDRKAALEEILNKNK--KPHQ- 67
             +LL F    P+   P+   +  D      +++  +K  R  + A +E++       P + 
Sbjct:    35 SLLSFWELIPMRAEPLRKKKKVDPRKDQAAKDRLKKRIRKLERASQELVPIEDFITPVRF 94

Query:    68 RKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLES 127
               K R R     S E  E R+ L+K W +Y+ +E + +   I  ++ +QQ AL++L+LES
Sbjct:    95 LDKSRQRPQEEHSFEESERRALLLKRWALYKQQEHEMERDAIRAMLEAQQEALEQLKLES 154

Query:   128 EELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK-EYR 177
              ELY EAI+ D +L PF  +GP +TPP+ NY+ P+G Y D+++ + + E++
Sbjct:   155 TELYAEAIKRDTSLFPFEKEGPHYTPPVPNYQAPEGRYNDITKVYTQVEFK 205

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005761 "mitochondrial ribosome" evidence=IDA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040912-37 mrpl40 "mitochondrial ribosomal protein L40" [Danio rerio (taxid:7955)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 43/99 (43%), Positives = 66/99 (66%)

Query:    72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
             R+RALP +  E  E R+ L+KEW  ++ K+ Q + + I   + +Q++AL +L+LES+ELY
Sbjct:    98 RTRALPEVCFEESERRALLLKEWSRHKHKQHQMEMQEIQEALKAQKQALMQLKLESKELY 157

Query:   132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSR 170
               A++ D   LPF   GP +TPPI +YE P+G Y D++R
Sbjct:   158 IAALRPDTDTLPFLHHGPSYTPPIADYEAPEGKYNDITR 196

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1RK59 MRPL40 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 53/171 (30%), Positives = 92/171 (53%)

Query:    12 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRN-FEKEYRDRKAALEEILNKNKKPHQRKK 70
             +L  F    P+   P+   +  D      +++  +K  R  + A +E++         K 
Sbjct:    35 SLFSFWGLVPMRAEPLRKKKKVDPKKDQAAKDRLKKRIRRLEKASQELIPIEDFITPVKF 94

Query:    71 I-RSRALPP--LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLES 127
             + + R  PP  L  E  E R+ L+K W +Y+ +E + +   I  L+ +Q+ AL ELRL S
Sbjct:    95 LNKERQRPPVELPFEESERRALLLKRWSLYKQREHEMERSAIRSLLEAQEEALQELRLSS 154

Query:   128 EELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK-EYR 177
              EL+ EA + DP+L PF  +GP +TPPI +Y+ P+G Y D+++ + + E++
Sbjct:   155 PELHAEATKRDPSLFPFERQGPDYTPPISDYQPPEGRYQDITKVYTQVEFK 205

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1N1R3 Bt.40326 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 52/171 (30%), Positives = 91/171 (53%)

Query:    12 TLLPFAAKGPLHTPPIENYECPDGDYTDVSRN-FEKEYRDRKAALEEILNKNKKPHQRKK 70
             +LL F    P    P+   +  D      ++   +K  R  + A +E++         K 
Sbjct:    35 SLLSFWGLVPTRAEPLRKKKKVDPKKDQAAKERLKKRIRRLEKATQELIPIEDFITPVKF 94

Query:    71 I-RSRALPP--LSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLES 127
             + ++R  PP  L  E  E R+ L+K+W +Y+ +E + +   I  L+ +Q+ AL EL L +
Sbjct:    95 LNQARQRPPVELPFEESERRALLLKKWSLYKQREHELERAAIASLLEAQREALQELELTA 154

Query:   128 EELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK-EYR 177
              EL+ EA + D +L PF  +GP +TPPI NY+ P+G Y D+++ + + E++
Sbjct:   155 PELHAEATKRDSSLFPFERQGPDYTPPIANYQPPEGRYQDITKVYTQVEFK 205

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00018793 mrpl-40 [Caenorhabditis elegans (taxid:6239)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/101 (41%), Positives = 59/101 (58%)

Query:    72 RSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESEELY 131
             R R    L+ E I+ R+  +K++   R    Q+D   I   I SQ++AL+EL++   ELY
Sbjct:    87 RRRPRTELTLEQIDERAIALKDYTRSRLALQQEDDAWIRGAIESQRKALNELKMLKLELY 146

Query:   132 QEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF 172
             + A+Q     LP   +GP  TPPI NYE PDGDY D +RN+
Sbjct:   147 EAAVQPAAKDLPLIVQGPSLTPPIRNYEAPDGDYIDTTRNW 187

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
pfam09812	146	pfam09812, MRP-L28, Mitochondrial ribosomal protei	2e-21

>gnl|CDD|220417 pfam09812, MRP-L28, Mitochondrial ribosomal protein L28

 Score = 85.1 bits (211), Expect = 2e-21
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query: 69  KKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQQRALDELRLESE 128
            K R R L  LS E +E R+ + K W +Y+ +E + + + + +   +QQ AL+EL+LES 
Sbjct: 54  AKRRQRKLLKLSPEDLERRALIEKCWALYQQQEREAENQQLRQQYEAQQEALEELKLESP 113

Query: 129 ELYQEAIQIDPTLLPFAAKGPLHTPPIE 156
           ELY+ AI  DP L P   +GP  TPP +
Sbjct: 114 ELYEAAIAPDPGLFPLELRGPTDTPPND 141

Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S). Length = 146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PF09812	157	MRP-L28: Mitochondrial ribosomal protein L28; Inte	100.0
KOG4778|consensus	186		100.0

>PF09812 MRP-L28: Mitochondrial ribosomal protein L28; InterPro: IPR019192 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.7e-46  Score=306.86  Aligned_cols=131  Identities=40%  Similarity=0.688  Sum_probs=124.4

Q ss_pred             hHHHHHHHHhH------HHHHHHHHhcCCCCccchhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13292         41 SRNFEKEYRDR------KAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIY  114 (198)
Q Consensus        41 sr~~ek~~~~~------~~~i~~~~~~~~~~~ke~~~RkRpl~~Ls~EelerRalL~K~Ws~Yk~~q~~~e~~~I~~~~~  114 (198)
                      .++.++.||-+      +.||+++ .-+..++++.+.|+|++++||+|++++|++|+|+|++|++++|++++++|+++|+
T Consensus        21 ~~rl~k~iRkleK~~~~l~Pi~e~-~v~~~~~~~~~~R~r~~~~ls~Ee~erh~~i~kaW~~yk~~~~~~~~~~l~~~~~   99 (157)
T PF09812_consen   21 RKRLEKFIRKLEKAAKQLKPIEEF-EVPQKSVDSASRRQRPLLKLSREELERHATIQKAWSLYKQQQREAREQQLRRQYE   99 (157)
T ss_pred             HHHHHHHHHHHHccCCCCCCchhh-hhhHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34778888844      5689998 8888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCHHHHHHHhccCCCCCCceecCCCCCCCCCCCCCCCCcccccchhh
Q psy13292        115 SQQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDGDYTDVSRNF  172 (198)
Q Consensus       115 SQqkALeELk~eSpeLYqaAiq~D~~LfP~e~~GPt~TPPi~~Y~~PDG~Y~DiTk~~  172 (198)
                      ||++||+||+.+||+||++||++|.++|||+++|||+||||+||++|||+|||||++|
T Consensus       100 sq~~AleeLr~~S~eLY~aA~~~d~~~fP~e~~~Pt~TPPi~~Y~~pdg~y~d~t~~~  157 (157)
T PF09812_consen  100 SQQKALEELRLESPELYQAAIQPDPGLFPLEMRGPTDTPPIKNYEAPDGKYIDITKKW  157 (157)
T ss_pred             HHHHHHHHHHhCCHHHHHHHhccCCCCCCeeecCCCCCCCCCCCCCCCCCeeeecccC
Confidence            9999999999999999999999999999999999999999999999999999999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Members of this family are components of the mitochondrial large ribosomal subunit. Mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].

>KOG4778|consensus

Probab=100.00  E-value=7.7e-35  Score=244.86  Aligned_cols=131  Identities=35%  Similarity=0.612  Sum_probs=121.5

Q ss_pred             HHHHHHHhH------HHHHHHHHhcCCCCccchhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13292         43 NFEKEYRDR------KAALEEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYSQ  116 (198)
Q Consensus        43 ~~ek~~~~~------~~~i~~~~~~~~~~~ke~~~RkRpl~~Ls~EelerRalL~K~Ws~Yk~~q~~~e~~~I~~~~~SQ  116 (198)
                      ..++-++-+      ..+++++ .......+++.+|+||+++|+.|++++||+|+|+|++|++++++++..+|+.+++||
T Consensus        49 rlk~~irK~~k~p~~~~pvd~l-~~p~~~~~~~~~rqrp~~klt~e~~e~rav~~k~W~~y~~~~rq~~d~~Ir~~~kaq  127 (186)
T KOG4778|consen   49 RLKRLIRKSQKFPTELIPVDDL-MVPLESEKKDYKRQRPLLKLTDEQLEKRAVILKTWSIYKQQQRQLEDVGIRPQSKAQ  127 (186)
T ss_pred             HHHHHHhhcccccccccchHHh-hhHHHhcCccccccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446666644      5677777 777888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCHHHHHHHhccCC-CCCCceecCCCCCCCCCCCCCCCCcccccchhhhH
Q psy13292        117 QRALDELRLESEELYQEAIQIDP-TLLPFAAKGPLHTPPIENYECPDGDYTDVSRNFEK  174 (198)
Q Consensus       117 qkALeELk~eSpeLYqaAiq~D~-~LfP~e~~GPt~TPPi~~Y~~PDG~Y~DiTk~~~~  174 (198)
                      .+||+||+.+|++||+||++.+. ++||++++||++||||.||..|||+|||+|++|++
T Consensus       128 ~~al~eLk~es~~Ly~aA~~~s~gk~lPve~~gP~~tPPi~~y~~p~g~y~~~tr~~~~  186 (186)
T KOG4778|consen  128 FKALNELKSESEELYEAAIEFSPGKRLPVEVKGPTDTPPIKNYKDPDGDYNDSTRGWCS  186 (186)
T ss_pred             HHHHHHHHHhhHHHHHHHhccccccccceeecCCCCCCCcccccCCCcchhhhhccCCC
Confidence            99999999999999999999998 88999999999999999999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 36/182 (19%)

Query: 3   PSVQYAIDPTLLP-FAAKGPLHTPPIENYECPDGD-YTDVSRNF-----EKEYRDRKAAL 55
           P      +P  L   A          +N++  + D  T +  +        EYR     L
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 56  EEILNKNKKPHQRKKIRSRALPPLSEEVIESRSNLIKEWGIYRSKEAQKDYKLIDRLIYS 115
             +   +        I +  L  +  +VI+S   ++    +++    +K  K     I S
Sbjct: 379 S-VFPPSAH------IPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPS 430

Query: 116 QQRALDELRLESEELYQEAIQIDPTLLPFAAKGPLHTPPIENYECPDG-DYTDVSRNFEK 174
                 EL+++ E  Y                  LH   +++Y  P   D  D+   +  
Sbjct: 431 IYL---ELKVKLENEYA-----------------LHRSIVDHYNIPKTFDSDDLIPPYLD 470

Query: 175 EY 176
           +Y
Sbjct: 471 QY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00