Psyllid ID: psy13352

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII
ccHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEEEEHHHccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccc
ccHHHHHHHHHHHHHHcccEEEcccccccccccEEEEEcccccccHHHHcccccccccEEcccHHEEccccccccHHcccccccHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEcccHHHHHHHHHHccccHHHEEEEcccccccccccccHHHcccccccccccEEEEccccccccccccccccccccEEEEEHHEEEEEcccccccccEEEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHHHHHHcHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHHccccccccccc
MKSIEICNKFLSFFkskghtivpssslipdndssllftnsgmvqfKDVFLGIEKRNYLRATSIQRCLraggkhndlenvgytnyHHTFFQMlgnwsfgdyfkyESLQWTWELLTQIYGLSIERLWITVYItddetyniwtnkigvpkervirigdkknsplytsdnfwqmsdtgpcgpcseifydcgstfhgnppgskenfgnRYIEIWNNVFMQFNkeinpktgsikltklpkycvdtgMGLERLASILQNVYNNYETDLFKTLIKAAARETncnnlknnsLKVIADHIRACVFLIIdgvfpgnegrgYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENIlltkpdkldgkLAFILYDTYGFPIDLTIDICKehnvsfnkndFILEMEKQRNNARlnskfkdiklnii
MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYitddetyniwtnkigvpkerviriGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINpktgsikltkLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIdgvfpgnegrgyVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILEnilltkpdkldGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKqrnnarlnskfkdiklnii
MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLrriirrairYGYKLGQNSIFLYKLVKDLIFNTYIIYkelkisvikieeilkkeeeCFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII
***IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNP***KENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILE**********************
**SIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENI********DGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILE****************IKLNII
MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII
***IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDI*****
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MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
A9IK31 873 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.634 1e-176
Q7VXE1 874 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.625 1e-173
Q7WHL6 874 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.625 1e-173
Q7W6N4 874 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.623 1e-172
B2JK72 874 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.622 1e-172
Q2KY72 873 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.625 1e-171
Q474F4 874 Alanine--tRNA ligase OS=C yes N/A 0.971 0.501 0.625 1e-171
Q13W97 874 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.613 1e-171
A9AC16 874 Alanine--tRNA ligase OS=B yes N/A 0.971 0.501 0.613 1e-170
Q8Y193 884 Alanine--tRNA ligase OS=R yes N/A 0.982 0.501 0.628 1e-170
>sp|A9IK31|SYA_BORPD Alanine--tRNA ligase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=alaS PE=3 SV=1 Back     alignment and function desciption
 Score =  617 bits (1591), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 283/446 (63%), Positives = 341/446 (76%), Gaps = 8/446 (1%)

Query: 1   MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
           MKS EI  KFL FF+SKGHTIVPS+SL+P ND +LLFTNSGMVQFKDVF G E R+Y RA
Sbjct: 1   MKSSEIRQKFLQFFQSKGHTIVPSASLVPGNDPTLLFTNSGMVQFKDVFTGKETRSYTRA 60

Query: 61  TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
           TS QR +RAGGKHNDLENVGYT  HHTFF+MLGN+SFGDYFK +++Q+ WELLTQ+Y L 
Sbjct: 61  TSSQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIQYAWELLTQVYKLP 120

Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
            E+LW+TVY  DD+ Y+IW  ++GVP+ER+IRIGD K S  Y SDNFWQM+DTGPCGPCS
Sbjct: 121 AEKLWVTVYQEDDQAYDIWATEVGVPRERIIRIGDNKGS-RYASDNFWQMADTGPCGPCS 179

Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
           EIFYD G    G PPGS E  G+RYIEIWN VFMQF ++      +  +T LPK CVDTG
Sbjct: 180 EIFYDHGPDVWGGPPGSPEEDGDRYIEIWNLVFMQFERD-----AAGNMTPLPKPCVDTG 234

Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDG 300
           MGLER+A++LQ V++NYE DLF+ LI+AAARET   NL++NSLKVIADHIRAC FLI+DG
Sbjct: 235 MGLERIAAVLQGVHSNYEIDLFQNLIRAAARETGVTNLEDNSLKVIADHIRACAFLIVDG 294

Query: 301 VFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEE 360
           V P NEGRGYVLRRI+RRA+R+GYKLGQ   F YKLV DL+      Y EL  +  ++ +
Sbjct: 295 VIPSNEGRGYVLRRIVRRALRHGYKLGQTKPFFYKLVPDLVAEMGQAYPELTQAAERVAQ 354

Query: 361 ILKKEEECFRKTLKYGIKILENILLTKP--DKLDGKLAFILYDTYGFPIDLTIDICKEHN 418
           +LK+EEE F +TL++G+KIL+  L   P   +LDG   F LYDTYGFP+DLT DIC+E N
Sbjct: 355 VLKQEEERFGETLEHGMKILDGALAGVPAGGQLDGTTLFTLYDTYGFPVDLTADICRERN 414

Query: 419 VSFNKNDFILEMEKQRNNARLNSKFK 444
           V  +   F   M +QR+ AR   KFK
Sbjct: 415 VEVDMAGFDAAMARQRDQARAAGKFK 440
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) (taxid: 340100)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q7VXE1|SYA_BORPE Alanine--tRNA ligase OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|Q7WHL6|SYA_BORBR Alanine--tRNA ligase OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|Q7W6N4|SYA_BORPA Alanine--tRNA ligase OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|B2JK72|SYA_BURP8 Alanine--tRNA ligase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|Q2KY72|SYA_BORA1 Alanine--tRNA ligase OS=Bordetella avium (strain 197N) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|Q474F4|SYA_CUPPJ Alanine--tRNA ligase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|Q13W97|SYA_BURXL Alanine--tRNA ligase OS=Burkholderia xenovorans (strain LB400) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|A9AC16|SYA_BURM1 Alanine--tRNA ligase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=alaS PE=3 SV=1 Back     alignment and function description
>sp|Q8Y193|SYA_RALSO Alanine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000) GN=alaS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
340786348 894 alanyl-tRNA synthetase [Collimonas fungi 0.982 0.495 0.680 0.0
399017441 874 alanine--tRNA ligase [Herbaspirillum sp. 0.982 0.506 0.684 0.0
409407370 874 alanyl-tRNA synthetase [Herbaspirillum s 0.982 0.506 0.668 1e-179
300312908 874 alanyl-tRNA synthetase [Herbaspirillum s 0.982 0.506 0.668 1e-179
398832195 874 alanine--tRNA ligase [Herbaspirillum sp. 0.982 0.506 0.666 1e-179
415939992 735 alanyl-tRNA synthetase, partial [Herbasp 0.982 0.602 0.668 1e-177
163856313 873 alanyl-tRNA synthetase [Bordetella petri 0.971 0.501 0.634 1e-174
452129535 873 alanyl-tRNA ligase [Bordetella holmesii 0.971 0.501 0.630 1e-173
422321688 874 alanyl-tRNA synthetase [Achromobacter xy 0.971 0.501 0.625 1e-172
311105349 874 alanyl-tRNA synthetase [Achromobacter xy 0.971 0.501 0.623 1e-172
>gi|340786348|ref|YP_004751813.1| alanyl-tRNA synthetase [Collimonas fungivorans Ter331] gi|340551615|gb|AEK60990.1| Alanyl-tRNA synthetase [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/444 (68%), Positives = 360/444 (81%), Gaps = 1/444 (0%)

Query: 1   MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
           M S EI  KFL FF+SKGHTIV SSSL+P ND +LLFTNSGMVQFKDVFLG EKRNY+RA
Sbjct: 21  MNSAEIREKFLKFFESKGHTIVRSSSLVPGNDPTLLFTNSGMVQFKDVFLGTEKRNYVRA 80

Query: 61  TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
           TS+QRCLRAGGKHNDLENVGYT  HHTFF+MLGNWSFGDYFK++SL W WELLT++YGL 
Sbjct: 81  TSVQRCLRAGGKHNDLENVGYTARHHTFFEMLGNWSFGDYFKHDSLVWAWELLTKVYGLP 140

Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
            ++LW TVY TDDE ++IW   IG+PKER++RIGD K +P Y SDNFWQM+DTGPCGPCS
Sbjct: 141 ADKLWATVYETDDEAFDIWHKVIGLPKERIVRIGDNKGAP-YASDNFWQMADTGPCGPCS 199

Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
           EIFYD G    G PPGS E  G+RYIEIWNNVFMQF+++I+PKTG   LT LPK CVDTG
Sbjct: 200 EIFYDHGPDVWGGPPGSPEQDGDRYIEIWNNVFMQFDRQIDPKTGEATLTPLPKQCVDTG 259

Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDG 300
           MGLERLA++LQ+V++NYE DLF+ LIKAAARETN  +L+NNSLKVIADHIRAC FL++DG
Sbjct: 260 MGLERLAAVLQHVHSNYEIDLFQRLIKAAARETNITDLENNSLKVIADHIRACSFLVVDG 319

Query: 301 VFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEE 360
           V PGNEGRGYVLRRIIRRA+R+G+KLGQ   F Y+LVKDL+      Y EL  +  ++E+
Sbjct: 320 VIPGNEGRGYVLRRIIRRALRHGHKLGQTKPFFYRLVKDLVLEMGAAYPELPEAAERVEQ 379

Query: 361 ILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVS 420
           +LK+EEE F +TL++G+KILE  L   P KLDG+ AF LYDT+GFP+DLT DIC+E  V 
Sbjct: 380 VLKQEEERFGETLEHGMKILEAALAKTPKKLDGETAFTLYDTFGFPLDLTADICREREVE 439

Query: 421 FNKNDFILEMEKQRNNARLNSKFK 444
            ++  F   ME+Q++ AR   KFK
Sbjct: 440 LDEVGFTTAMERQKSTARAAGKFK 463

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|399017441|ref|ZP_10719633.1| alanine--tRNA ligase [Herbaspirillum sp. CF444] gi|398103315|gb|EJL93486.1| alanine--tRNA ligase [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|409407370|ref|ZP_11255821.1| alanyl-tRNA synthetase [Herbaspirillum sp. GW103] gi|386433121|gb|EIJ45947.1| alanyl-tRNA synthetase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|300312908|ref|YP_003777000.1| alanyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300075693|gb|ADJ65092.1| alanyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|398832195|ref|ZP_10590359.1| alanine--tRNA ligase [Herbaspirillum sp. YR522] gi|398223732|gb|EJN10067.1| alanine--tRNA ligase [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|415939992|ref|ZP_11555602.1| alanyl-tRNA synthetase, partial [Herbaspirillum frisingense GSF30] gi|407759222|gb|EKF68945.1| alanyl-tRNA synthetase, partial [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|163856313|ref|YP_001630611.1| alanyl-tRNA synthetase [Bordetella petrii DSM 12804] gi|205829993|sp|A9IK31.1|SYA_BORPD RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS gi|163260041|emb|CAP42342.1| alaS2 [Bordetella petrii] Back     alignment and taxonomy information
>gi|452129535|ref|ZP_21942110.1| alanyl-tRNA ligase [Bordetella holmesii H558] gi|451923170|gb|EMD73312.1| alanyl-tRNA ligase [Bordetella holmesii H558] Back     alignment and taxonomy information
>gi|422321688|ref|ZP_16402733.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans C54] gi|317403428|gb|EFV83940.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans C54] Back     alignment and taxonomy information
>gi|311105349|ref|YP_003978202.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8] gi|310760038|gb|ADP15487.1| alanyl-tRNA synthetase [Achromobacter xylosoxidans A8] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
UNIPROTKB|P00957 876 alaS "alanyl-tRNA synthetase" 0.960 0.494 0.558 6.6e-129
UNIPROTKB|Q56648 860 alaS "Alanine--tRNA ligase" [V 0.966 0.506 0.538 1.7e-123
TIGR_CMR|VC_0545 860 VC_0545 "alanyl-tRNA synthetas 0.966 0.506 0.538 1.7e-123
TIGR_CMR|SO_3428 874 SO_3428 "alanyl-tRNA synthetas 0.949 0.489 0.528 2.5e-120
TIGR_CMR|CBU_1052 865 CBU_1052 "alanyl-tRNA syntheta 0.953 0.497 0.497 2.6e-111
TIGR_CMR|SPO_2033 890 SPO_2033 "alanyl-tRNA syntheta 0.940 0.476 0.480 5.7e-107
TIGR_CMR|ECH_0981 887 ECH_0981 "alanyl-tRNA syntheta 0.933 0.474 0.454 2.8e-98
TIGR_CMR|GSU_0148 875 GSU_0148 "alanyl-tRNA syntheta 0.942 0.485 0.463 1.2e-97
TIGR_CMR|APH_1059 876 APH_1059 "alanyl-tRNA syntheta 0.924 0.476 0.464 3.2e-97
TIGR_CMR|NSE_0156 848 NSE_0156 "alanyl-tRNA syntheta 0.937 0.498 0.443 5.9e-96
UNIPROTKB|P00957 alaS "alanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
 Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
 Identities = 247/442 (55%), Positives = 306/442 (69%)

Query:     5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQ 64
             EI   FL FF SKGH +V SSSL+P ND +LLFTN+GM QFKDVFLG++KRNY RAT+ Q
Sbjct:     7 EIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQ 66

Query:    65 RCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYGLSIE 122
             RC+RAGGKHNDLENVGYT  HHTFF+MLGN+SFGDYFK++++Q+ WELLT  + + L  E
Sbjct:    67 RCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIQFAWELLTSEKWFALPKE 126

Query:   123 RLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEI 182
             RLW+TVY +DDE Y IW  ++G+P+ER+IRIGD K +P Y SDNFWQM DTGPCGPC+EI
Sbjct:   127 RLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAP-YASDNFWQMGDTGPCGPCTEI 185

Query:   183 FYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMG 242
             FYD G    G PPGS E  G+RYIEIWN VFMQFN++ +   G+++   LPK  VDTGMG
Sbjct:   186 FYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAD---GTME--PLPKPSVDTGMG 240

Query:   243 LERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVF 302
             LER+A++LQ+V +NY+ DLF+TLI+A A+ T   +L N SL+VIADHIR+C FLI DGV 
Sbjct:   241 LERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVM 300

Query:   303 PGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXXXXXXXX 362
             P NE RGYVL         +G  LG    F YKLV  LI                     
Sbjct:   301 PSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVL 360

Query:   363 XXXXXCFRKTLKYGIKIL-ENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSF 421
                   F +TL+ G+ +L E +     D LDG+ AF LYDTYGFP+DLT D+C+E N+  
Sbjct:   361 KTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKV 420

Query:   422 NKNDFILEMEKQRNNARLNSKF 443
             ++  F   ME+QR  AR  S F
Sbjct:   421 DEAGFEAAMEEQRRRAREASGF 442
GO:0046872 "metal ion binding" evidence=IEA
GO:0042802 "identical protein binding" evidence=IPI
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0006450 "regulation of translational fidelity" evidence=IMP;IDA
GO:0001141 "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA
GO:0002161 "aminoacyl-tRNA editing activity" evidence=IMP;IDA
GO:0016020 "membrane" evidence=IDA
GO:0003723 "RNA binding" evidence=IEA
GO:0000049 "tRNA binding" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA;IDA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA
GO:0004813 "alanine-tRNA ligase activity" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=IEA
UNIPROTKB|Q56648 alaS "Alanine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0545 VC_0545 "alanyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3428 SO_3428 "alanyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1052 CBU_1052 "alanyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2033 SPO_2033 "alanyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0981 ECH_0981 "alanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0148 GSU_0148 "alanyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|APH_1059 APH_1059 "alanyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0156 NSE_0156 "alanyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q129G8SYA_POLSJ6, ., 1, ., 1, ., 70.62270.96230.4943yesN/A
A9C0B9SYA_DELAS6, ., 1, ., 1, ., 70.62270.96230.4965yesN/A
Q8ZMK6SYA_SALTY6, ., 1, ., 1, ., 70.59230.96450.4965yesN/A
Q1BX19SYA_BURCA6, ., 1, ., 1, ., 70.60710.97110.5011yesN/A
Q13W97SYA_BURXL6, ., 1, ., 1, ., 70.61380.97110.5011yesN/A
Q3JT87SYA_BURP16, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
Q221G2SYA_RHOFD6, ., 1, ., 1, ., 70.62060.95120.4897yesN/A
Q57KU6SYA_SALCH6, ., 1, ., 1, ., 70.59230.96450.4965yesN/A
B1YNJ6SYA_BURA46, ., 1, ., 1, ., 70.61160.97110.5011yesN/A
B1LQ15SYA_ECOSM6, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
Q0BG79SYA_BURCM6, ., 1, ., 1, ., 70.61160.97110.5011yesN/A
Q7VXE1SYA_BORPE6, ., 1, ., 1, ., 70.62550.97110.5011yesN/A
Q8Y193SYA_RALSO6, ., 1, ., 1, ., 70.62830.98220.5011yesN/A
B1K026SYA_BURCC6, ., 1, ., 1, ., 70.60930.97110.5011yesN/A
Q7WHL6SYA_BORBR6, ., 1, ., 1, ., 70.62550.97110.5011yesN/A
Q2KY72SYA_BORA16, ., 1, ., 1, ., 70.62550.97110.5017yesN/A
Q0K823SYA_CUPNH6, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
A9N0C1SYA_SALPB6, ., 1, ., 1, ., 70.59230.96450.4965yesN/A
Q39HB7SYA_BURS36, ., 1, ., 1, ., 70.60930.97110.5011yesN/A
A1WIG8SYA_VEREI6, ., 1, ., 1, ., 70.61070.97110.5022yesN/A
Q1LQ59SYA_RALME6, ., 1, ., 1, ., 70.60930.97110.5011yesN/A
A3NUB0SYA_BURP06, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
A1W7D0SYA_ACISJ6, ., 1, ., 1, ., 70.61360.96230.4965yesN/A
Q62KZ3SYA_BURMA6, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
Q7W6N4SYA_BORPA6, ., 1, ., 1, ., 70.62330.97110.5011yesN/A
Q1R804SYA_ECOUT6, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
Q0TEI3SYA_ECOL56, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
B1IUY2SYA_ECOLC6, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
Q63TF9SYA_BURPS6, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
A8A3H4SYA_ECOHS6, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
Q5PF17SYA_SALPA6, ., 1, ., 1, ., 70.59450.96450.4965yesN/A
Q3YYG6SYA_SHISS6, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
A0K6N4SYA_BURCH6, ., 1, ., 1, ., 70.60930.97110.5011yesN/A
Q32CN1SYA_SHIDS6, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
A1AEN7SYA_ECOK16, ., 1, ., 1, ., 70.59000.96450.4965yesN/A
A3MJ36SYA_BURM76, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
A2S3D4SYA_BURM96, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
A9AC16SYA_BURM16, ., 1, ., 1, ., 70.61380.97110.5011yesN/A
Q474F4SYA_CUPPJ6, ., 1, ., 1, ., 70.6250.97110.5011yesN/A
A1V3F2SYA_BURMS6, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
A6SVH6SYA_JANMA6, ., 1, ., 1, ., 70.63060.97110.5040yesN/A
A9IK31SYA_BORPD6, ., 1, ., 1, ., 70.63450.97110.5017yesN/A
B2JK72SYA_BURP86, ., 1, ., 1, ., 70.62270.97110.5011yesN/A
A4G2S9SYA_HERAR6, ., 1, ., 1, ., 70.63060.97110.5040yesN/A
A3N8K7SYA_BURP66, ., 1, ., 1, ., 70.61830.97110.5011yesN/A
B2SZN0SYA_BURPP6, ., 1, ., 1, ., 70.60930.97110.5011yesN/A
Q2SV73SYA_BURTA6, ., 1, ., 1, ., 70.61600.97110.5011yesN/A
A4JDM9SYA_BURVG6, ., 1, ., 1, ., 70.60930.97110.5011yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.70.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 0.0
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 0.0
pfam01411 551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 0.0
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 0.0
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 1e-179
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 1e-118
PRK01584 594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 1e-116
TIGR03683 902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 1e-29
PRK13902 900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 2e-27
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 2e-04
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information 
 Score =  748 bits (1934), Expect = 0.0
 Identities = 260/447 (58%), Positives = 313/447 (70%), Gaps = 19/447 (4%)

Query: 1   MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
           M S EI  KFL FF+SKGHT+VPS+SL+P ND +LLFTN+GMVQFKD FLG EK  Y RA
Sbjct: 2   MTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRA 61

Query: 61  TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
           T+ Q+C+R     NDLENVGYT  HHTFF+MLGN+SFGDYFK E+++W WELLT + GL 
Sbjct: 62  TTSQKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLP 117

Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
            E+L++TVY  DDE Y+IW  +IGVP ER+IRIG K        DNFW M DTGPCGPCS
Sbjct: 118 KEKLYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKK--------DNFWSMGDTGPCGPCS 169

Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
           EIFYD G  + G PPGS E  G+RYIEIWN VFMQFN++ +       LT LPK  +DTG
Sbjct: 170 EIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGN-----LTPLPKKNIDTG 224

Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDG 300
           MGLER+A++LQ V++NYETDLF+ LIKA    T      + S +VIADHIRA  FLI DG
Sbjct: 225 MGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKYEDDVSFRVIADHIRAVAFLIADG 284

Query: 301 VFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEE 360
           V P NEGRGYVLRRI+RRA+R+G  LG    FLYKLV  +I      Y ELK     IE+
Sbjct: 285 VLPSNEGRGYVLRRILRRAVRHGRLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEK 344

Query: 361 ILKKEEECFRKTLKYGIKILENIL--LTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHN 418
           +LK EEE F KTL+ G+K+LE  L  L     L G+ AF LYDTYGFP+DLT +I +E  
Sbjct: 345 VLKAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARERG 404

Query: 419 VSFNKNDFILEMEKQRNNARLNSKFKD 445
           ++ ++  F   ME+QR  AR   KFK 
Sbjct: 405 LTVDEEGFEAAMEEQRERARAARKFKG 431

Length = 865
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
PLN02900 936 alanyl-tRNA synthetase 100.0
PRK01584 594 alanyl-tRNA synthetase; Provisional 100.0
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 100.0
KOG0188|consensus 895 100.0
PF01411 552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 100.0
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
TIGR00388293 glyQ glycyl-tRNA synthetase, tetrameric type, alph 97.0
PRK09348283 glyQ glycyl-tRNA synthetase subunit alpha; Validat 96.58
cd00733279 GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( 96.33
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 96.08
COG0752298 GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl 96.03
PRK14908 1000 glycyl-tRNA synthetase; Provisional 95.32
PF01411 552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 95.03
PF02091284 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit 94.86
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 94.28
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 93.53
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 93.49
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 93.36
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 92.49
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 90.85
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 86.69
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 86.32
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 81.53
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.3e-174  Score=1418.42  Aligned_cols=422  Identities=56%  Similarity=0.948  Sum_probs=411.7

Q ss_pred             CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352          1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG   80 (451)
Q Consensus         1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG   80 (451)
                      ||++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++||++|+||||||||+    |||||||
T Consensus         6 ~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~----NDieNVG   81 (879)
T COG0013           6 LTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRT----NDIDNVG   81 (879)
T ss_pred             CCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeecccccccc----CchhhcC
Confidence            588999999999999999999999999999999999999999999999999999999999999999999    9999999


Q ss_pred             CCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCC
Q psy13352         81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSP  160 (451)
Q Consensus        81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~  160 (451)
                      +|+|||||||||||||||||||+|||.|||||||++||||||+||||||++||||+++|++.+|+|++||+|+|.+    
T Consensus        82 ~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~----  157 (879)
T COG0013          82 YTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGAS----  157 (879)
T ss_pred             ccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             CCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeecccccccc-CCCCCCCcccccCCCCcccc
Q psy13352        161 LYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKE-INPKTGSIKLTKLPKYCVDT  239 (451)
Q Consensus       161 ~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~-~d~~~G~~~l~~Lp~k~IDT  239 (451)
                          ||||+||+ ||||||||||||+|+.+++++++.+.+|++|||||||||||||||+ .+   |  +|.|||+|||||
T Consensus       158 ----dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~---g--~~~~Lp~k~IDT  227 (879)
T COG0013         158 ----DNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGD---G--NYTPLPKKNIDT  227 (879)
T ss_pred             ----CCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCC---C--CcccCCCCCccc
Confidence                99999999 9999999999999999998888999999999999999999999999 57   8  999999999999


Q ss_pred             CchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCCC-----CcceEEeechhhhhhhhhhcCcccCCCCCchHHHH
Q psy13352        240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLK-----NNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRR  314 (451)
Q Consensus       240 GmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~~-----~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRr  314 (451)
                      |||||||+|||||+|||||||+|.|||+.+++++|..+..     +.++||||||+||++|||+|||+|||+||||||||
T Consensus       228 GmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRr  307 (879)
T COG0013         228 GMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRR  307 (879)
T ss_pred             CccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHH
Confidence            9999999999999999999999999999999999987533     55999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCC
Q psy13352        315 IIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT-K-PDKLD  392 (451)
Q Consensus       315 ilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~-~-~~~l~  392 (451)
                      |||||+||+++||++.|||++||+++++.|+++||||+++++.|+++|+.||++|.+||++|+++|++++++ + ++.||
T Consensus       308 iiRRa~R~~~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~  387 (879)
T COG0013         308 IIRRALRHGKLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLD  387 (879)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988 3 36899


Q ss_pred             hHHHHHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhc
Q psy13352        393 GKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLN  440 (451)
Q Consensus       393 g~~af~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~  440 (451)
                      |++||+||||||||+|||+|||+|+|++||+++|+.+|++||++||++
T Consensus       388 ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~  435 (879)
T COG0013         388 GEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARAS  435 (879)
T ss_pred             hHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999975

>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit Back     alignment and domain information
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14908 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 1e-142
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 1e-141
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 1e-108
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 1e-108
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 1e-104
2ztg_A 739 Crystal Structure Of Archaeoglobus Fulgidus Alanyl- 2e-10
2zzf_A 752 Crystal Structure Of Alanyl-Trna Synthetase Without 3e-06
2zze_A 752 Crystal Structure Of Alanyl-Trna Synthetase Without 1e-04
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure 
Iteration: 1

 Score =  500 bits (1288), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/444 (54%), Positives = 301/444 (67%), Gaps = 9/444 (2%)
Query: 3   SIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATS 62
           + EI   FL FF SKGH +V SSSL+P ND +LLFTN+GM QFKDVFLG++KRNY RAT+
Sbjct: 4   TAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATT 63
Query: 63  IQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYGLS 120
            QRC+RAGGKHNDLENVGYT  HHTFF+MLGN+SFGDYFK +++ + W LLT  + + L 
Sbjct: 64  SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALP 123
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
            ERLW+TVY +DDE Y IW  ++G+P+ER+IRIGD K +P Y SDNFWQM DTGPCGPC+
Sbjct: 124 KERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAP-YASDNFWQMGDTGPCGPCT 182
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
           EIFYD G    G PPGS E  G+RYIEIWN VFMQFN++ +       +  LPK  VDTG
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADG-----TMEPLPKPSVDTG 237
Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDG 300
           MGLER+A++LQ+V +NY+ DLF+TLI+A A+ T   +L N SL+VIADHIR+C FLI DG
Sbjct: 238 MGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADG 297
Query: 301 VFPGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXXXXXX 360
           V P NE RGYVL         +G  LG    F YKLV  LI                   
Sbjct: 298 VMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQ 357
Query: 361 XXXXXXXCFRKTLKYGIKIL-ENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV 419
                   F +TL+ G+ +L E +     D LDG+ AF LYDTYGFP+DLT D+C+E N+
Sbjct: 358 VLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNI 417
Query: 420 SFNKNDFILEMEKQRNNARLNSKF 443
             ++  F   ME+QR  AR  S F
Sbjct: 418 KVDEAGFEAAMEEQRRRAREASGF 441
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 Back     alignment and structure
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 Back     alignment and structure
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 0.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 0.0
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 0.0
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 1e-113
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
 Score =  740 bits (1912), Expect = 0.0
 Identities = 260/446 (58%), Positives = 324/446 (72%), Gaps = 9/446 (2%)

Query: 1   MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
             + EI   FL FF SKGH +V SSSL+P ND +LLFTN+GM QFKDVFLG++KRNY RA
Sbjct: 2   KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61

Query: 61  TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYG 118
           T+ QRC+RAGGKHNDLENVGYT  HHTFF+MLGN+SFGDYFK +++ + W LLT  + + 
Sbjct: 62  TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121

Query: 119 LSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGP 178
           L  ERLW+TVY +DDE Y IW  ++G+P+ER+IRIGD K +P Y SDNFWQM DTGPCGP
Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAP-YASDNFWQMGDTGPCGP 180

Query: 179 CSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVD 238
           C+EIFYD G    G PPGS E  G+RYIEIWN VFMQFN++ +   G   +  LPK  VD
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAD---G--TMEPLPKPSVD 235

Query: 239 TGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLII 298
           T MGLER+A++LQ+V +NY+ DLF+TLI+A A+ T   +L N SL+VIADHIR+C FLI 
Sbjct: 236 TAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIA 295

Query: 299 DGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKI 358
           DGV P NE RGYVLRRIIRRA+R+G  LG    F YKLV  LI       ++LK    ++
Sbjct: 296 DGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQV 355

Query: 359 EEILKKEEECFRKTLKYGIKILENILL-TKPDKLDGKLAFILYDTYGFPIDLTIDICKEH 417
           E++LK EEE F +TL+ G+ +L+  L     D LDG+ AF LYDTYGFP+DLT D+C+E 
Sbjct: 356 EQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRER 415

Query: 418 NVSFNKNDFILEMEKQRNNARLNSKF 443
           N+  ++  F   ME+QR  AR  S F
Sbjct: 416 NIKVDEAGFEAAMEEQRRRAREASGF 441
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
3rf1_A311 Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA 95.93
1j5w_A298 Glycyl-tRNA synthetase alpha chain; structural gen 95.37
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 95.1
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 92.99
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 90.45
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
Probab=100.00  E-value=5e-191  Score=1459.42  Aligned_cols=436  Identities=59%  Similarity=1.042  Sum_probs=424.1

Q ss_pred             CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352          1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG   80 (451)
Q Consensus         1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG   80 (451)
                      +|++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++||++|+||||||||+|||||||||||
T Consensus         2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenVG   81 (441)
T 3hy0_A            2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVG   81 (441)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred             CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhhC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhhhccccccccchHHHHHHHHHHhh--hhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCC
Q psy13352         81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKN  158 (451)
Q Consensus        81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT--~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~  158 (451)
                      +|+|||||||||||||||||||+|||+|||||||  ++|||||+|||||||++|+||++||++.+|||++||+++|++|+
T Consensus        82 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~  161 (441)
T 3hy0_A           82 YTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKG  161 (441)
T ss_dssp             TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTS
T ss_pred             CCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCCCHHHHHHHHHccCCCHHHeeecCcccc
Confidence            9999999999999999999999999999999999  67999999999999999999999999999999999999996544


Q ss_pred             CCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccc
Q psy13352        159 SPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVD  238 (451)
Q Consensus       159 ~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~ID  238 (451)
                      .+ |.+||||+||+|||||||||||||+|+++.||+++++++||+|||||||||||||||+++   |  +|.|||+||||
T Consensus       162 ~~-y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~---g--~l~pLp~k~ID  235 (441)
T 3hy0_A          162 AP-YASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAD---G--TMEPLPKPSVD  235 (441)
T ss_dssp             BT-TBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTT---S--CEEEEEEEEEE
T ss_pred             cc-ccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCC---C--ccccCCCCcee
Confidence            44 777999999999999999999999999998888899999999999999999999999999   9  99999999999


Q ss_pred             cCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCCCCcceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHH
Q psy13352        239 TGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRR  318 (451)
Q Consensus       239 TGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~~~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRR  318 (451)
                      ||||||||||||||++||||||+|.|||+++++++|+.+..+.++||||||+||++|||+|||+|||+||||||||||||
T Consensus       236 TGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~~~~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRR  315 (441)
T 3hy0_A          236 TAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRR  315 (441)
T ss_dssp             EEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCCccccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHH
Confidence            99999999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCChHHHH
Q psy13352        319 AIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT-KPDKLDGKLAF  397 (451)
Q Consensus       319 a~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~-~~~~l~g~~af  397 (451)
                      |+|++++||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++ +++.|||++||
T Consensus       316 Avr~g~~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~l~g~~af  395 (441)
T 3hy0_A          316 AVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAF  395 (441)
T ss_dssp             HHHHHHHHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCSSEECHHHHH
T ss_pred             HHHHHHHhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987 44689999999


Q ss_pred             HHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhccc
Q psy13352        398 ILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSK  442 (451)
Q Consensus       398 ~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~~  442 (451)
                      +||||||||+|||++||+|+|++||+++|+++|++||+|||++++
T Consensus       396 ~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~~~  440 (441)
T 3hy0_A          396 RLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASG  440 (441)
T ss_dssp             HHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999998754
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* Back     alignment and structure
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 451
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 1e-93
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 8e-42
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

 Score =  280 bits (718), Expect = 1e-93
 Identities = 137/257 (53%), Positives = 180/257 (70%), Gaps = 22/257 (8%)

Query: 1   MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
           + + EI   FLSFF+ KGHT V S+ L+P+ND +LLF N+GMV FK+VFLG+EKR Y RA
Sbjct: 2   LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRA 61

Query: 61  TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
           TS Q+CLR  GKHNDLE VGYT+ HHTFF+MLGN+SFGDYFK E++++ WE +T++  L 
Sbjct: 62  TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLP 121

Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
            E+L+++VY  D+E Y IW   IG+P ER+ R+G++        DNFWQM D GPCGP S
Sbjct: 122 KEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE--------DNFWQMGDVGPCGPSS 173

Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
           EI+ D G  + G+          RY+EIWN VFMQ+N++ N       LT LP   +DTG
Sbjct: 174 EIYVDRGEEYEGDE---------RYLEIWNLVFMQYNRDENG-----VLTPLPHPNIDTG 219

Query: 241 MGLERLASILQNVYNNY 257
           MGLER+AS+LQ   +N+
Sbjct: 220 MGLERIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 100.0
d1j5wa_281 Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo 96.96
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 86.87
d1u9pa136 Arc repressor {Salmonella bacteriophage P22 [TaxId 80.25
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=3.6e-118  Score=856.12  Aligned_cols=235  Identities=58%  Similarity=1.090  Sum_probs=230.2

Q ss_pred             CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352          1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG   80 (451)
Q Consensus         1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG   80 (451)
                      ||++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++||++|+|++|||||+|||||||||||
T Consensus         2 mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~VG   81 (236)
T d1riqa2           2 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVG   81 (236)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTTT
T ss_pred             CCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccCCCccccccccccccCccchhhhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCC
Q psy13352         81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSP  160 (451)
Q Consensus        81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~  160 (451)
                      +|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+||+++|.+.+|||++||++++.+    
T Consensus        82 ~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~D~e~~~~w~~~~gi~~~rI~~~~~~----  157 (236)
T d1riqa2          82 YTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE----  157 (236)
T ss_dssp             TSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHH----
T ss_pred             CcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecCcHHHHHHHHhhcCcccccceecCCC----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             CCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccC
Q psy13352        161 LYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG  240 (451)
Q Consensus       161 ~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTG  240 (451)
                          ||||+||++||||||||||||+|+.++         +++|||||||+|||||+|.++   |  +|.|||+|+||||
T Consensus       158 ----dNfW~~g~~GpcGPcsEi~yd~g~~~~---------~~~r~lEIwNlVFmqy~~~~~---G--~~~~L~~k~IDTG  219 (236)
T d1riqa2         158 ----DNFWQMGDVGPCGPSSEIYVDRGEEYE---------GDERYLEIWNLVFMQYNRDEN---G--VLTPLPHPNIDTG  219 (236)
T ss_dssp             ----HHEEESSSSEEEEEEEEEEEECCTTSC---------HHHHEEEEEEEEEEEEEECTT---S--CEEEEEEEEEEEE
T ss_pred             ----CCccccCCCCCCCcceeEEEccccccC---------CCCceeeeeeeeheeeeecCC---C--ccccCCCCcccCC
Confidence                999999999999999999999987652         357999999999999999999   9  9999999999999


Q ss_pred             chHHHHHHHHhcCCCcc
Q psy13352        241 MGLERLASILQNVYNNY  257 (451)
Q Consensus       241 mGLERl~~vlQg~~snY  257 (451)
                      ||||||||||||++|||
T Consensus       220 mGLERi~~vlqg~~s~y  236 (236)
T d1riqa2         220 MGLERIASVLQGKNSNF  236 (236)
T ss_dssp             EEHHHHHHHHTTCSSGG
T ss_pred             ccHHHHHHHHcCCCCCC
Confidence            99999999999999998
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]} Back     information, alignment and structure