Psyllid ID: psy13364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MPPVGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLLFEPAPNQGTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKLKRLDFNCLK
Secondary Structure (PSIPRED)
ccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHEEEEEEEEcccccccccccccHHccccccHHEEEcccccccEEccccccccHHHcccccccEEEccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHEHHHHEHEcccccc
Coil and Loop (DISEMBL)
mppvgmtttikqkspilagnFAVWGAMFSTIDCSLVyvrkkedpwnsiisGAATGGILaarngvpamagsaliggkvRTLELVLLfepapnqgtsiiSFYNFLTYRYRWIYLrghrpltygynkskelrsspvmeryvnygenlvhveatpeveleeyarepcpwrivddcggaftmgLIGGALFhgikgfrnapsgmnrrflgmtttikqkspilagnFAVWGAMFSTIDCSLVyvrkkedpwnsiisGAATGGILaarngvpamagsaliggklkrldfnclk
Flexible Loop (DISEMBL)
mppvgmtttikqkspiLAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLLFepapnqgtsiiSFYNFLTYRYRWIYLRGhrpltygynkskelrsSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGsaliggklkrldfnclk
Low Complexity Region (SEG)
MPPVGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLLFEPAPNQGTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKLKRLDFNCLK
Disordered region (IsUnstruct)
*************SPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLLFEPAPNQGTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKLKRLDFNC**
Disordered Region (DISOPRED)
*******TTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLL****************************************************************************PCPWRIVDDCGGAFTMGLIGGALFHGIKG**************MTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKLKRLDFNCLK
Disordered Region (DISEMBL)
**********KQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLLFEPAPNQGTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKLKRLDFNCLK
Disordered Region (DISPRO)
*PPVGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLLFEPAPNQGTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKLKRLDFNCLK
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPVGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTLELVLLFEPAPNQGTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKLKRLDFNCLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q9Z0V8	171	Mitochondrial import inne	yes	N/A	0.438	0.730	0.688	2e-45
Q99595	171	Mitochondrial import inne	yes	N/A	0.438	0.730	0.696	2e-45
O35092	171	Mitochondrial import inne	yes	N/A	0.438	0.730	0.68	7e-45
Q9Z0V7	172	Mitochondrial import inne	no	N/A	0.438	0.726	0.656	1e-43
Q9VNA0	179	Probable mitochondrial im	no	N/A	0.438	0.698	0.648	2e-43
O60830	172	Mitochondrial import inne	no	N/A	0.438	0.726	0.648	4e-43
Q2HJE9	172	Mitochondrial import inne	no	N/A	0.438	0.726	0.648	1e-42
Q9VGA2	222	Probable mitochondrial im	no	N/A	0.410	0.527	0.658	4e-42
Q9VN97	224	Probable mitochondrial im	no	N/A	0.410	0.522	0.606	4e-39
Q9SP35	243	Mitochondrial import inne	yes	N/A	0.424	0.497	0.569	2e-34

>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-A OS=Mus musculus GN=Timm17a PE=2 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 97/125 (77%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG IGG +F   KGFRN+P G+N R  G  T IK ++P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
            L G+FAVWG +FSTIDCS+V +R KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct: 61  QLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ILLAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
Mus musculus (taxid: 10090)

>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-A OS=Homo sapiens GN=TIMM17A PE=1 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 97/125 (77%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG IGG +F  IKGFRN+P G+N R  G  T IK ++P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
            L G+FAVWG +FS IDCS+V VR KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct: 61  QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ILLAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17-A OS=Rattus norvegicus GN=Timm17a PE=2 SV=1

 Score =  181 bits (458), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 96/125 (76%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG IGG +F   KGFRN+P G+N R  G  T IK ++P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
            L G+FAVWG +FSTIDC +V +R KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct: 61  QLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ILLAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=2 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG+IGG +F  IKGFRNAP G+  RF G    ++ ++P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
            + G+FAVWG +FSTIDC LV +R KEDPWNSI SGA TG +LAAR+G  AM GSA++GG
Sbjct: 61  QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ILLAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Mus musculus (taxid: 10090)

>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 1 OS=Drosophila melanogaster GN=Tim17b1 PE=2 SV=2

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 95/125 (76%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           + EY REPCP+RIV+DCGGAF MG +GG  F  IKGFRNAPSG+  R  G    ++ +S 
Sbjct: 1   MAEYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSG 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           ++ GNFAVWGA FS IDCSLVY RKKEDPWN+IISGA TGGILAAR G+ +M  SAL+GG
Sbjct: 61  LVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ALLAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Homo sapiens GN=TIMM17B PE=1 SV=1

 Score =  175 bits (443), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 97/125 (77%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG+IGG +F  IKGFRNAP G+  R  G    ++ ++P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
            + G+FAVWG +FSTIDC LV +R KEDPWNSI SGA TG +LAAR+G  AM GSA++GG
Sbjct: 61  QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ILLAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Homo sapiens (taxid: 9606)

>sp|Q2HJE9|TI17B_BOVIN Mitochondrial import inner membrane translocase subunit Tim17-B OS=Bos taurus GN=TIMM17B PE=2 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 96/125 (76%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG+IGG +F  IKGFRNAP GM  R  G    ++ ++P
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGMRHRLRGSVNAVRIRAP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
            + G+FAVWG +FSTIDC LV +R KEDPWNSI SGA TG +LAAR+   AM GSA++GG
Sbjct: 61  QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSVPLAMVGSAMMGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ILLAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Bos taurus (taxid: 9913)

>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 96/117 (82%)

Query: 157 EYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPIL 216
           EY R+PCP RIV+DCG AF MG IGG+LF  +KGFRNAP+G+ RR  G    +K ++P +
Sbjct: 2   EYNRQPCPIRIVEDCGCAFMMGTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSI 61

Query: 217 AGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIG 273
           AG+FAVWGA FST+DC+LV+ R++ED WNSI+SGAATGGILAARNG+ AMA SAL+G
Sbjct: 62  AGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNGIRAMANSALVG 118

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit Tim17 4 OS=Drosophila melanogaster GN=Tim17a2 PE=3 SV=1

 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 93/117 (79%)

Query: 157 EYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPIL 216
           EY R+PCP RIV+DCG AF MG +GG+LF  +KGFRNAPSG+ R   G   +++ ++P +
Sbjct: 2   EYNRQPCPIRIVEDCGCAFMMGTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAI 61

Query: 217 AGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIG 273
           AG+FA+WGA FST+DC +V  R++ED WN+I+SGAATGGILAARNG+ AMA SA +G
Sbjct: 62  AGSFAIWGATFSTVDCVMVSYRQREDSWNAIVSGAATGGILAARNGIRAMANSAFVG 118

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q9SP35|TI172_ARATH Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 89/123 (72%), Gaps = 2/123 (1%)

Query: 157 EYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPIL 216
           E +REPCP RI+DD GGAF MG +GG+ FH IKG  N+P G   RF+G T ++   +P  
Sbjct: 5   ETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGTYNSPKG--SRFVGGTQSVSMNAPRT 62

Query: 217 AGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKL 276
            G+FAVWG +FST DC++VY+R+KEDPWNSII+GAATGG L+ R G  A + SA+ GG L
Sbjct: 63  GGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLSMRQGAGAASRSAIFGGVL 122

Query: 277 KRL 279
             L
Sbjct: 123 LAL 125

Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
270002311	177	hypothetical protein TcasGA2_TC001322 [T	0.477	0.768	0.75	1e-54
328778455	160	PREDICTED: mitochondrial import inner me	0.438	0.781	0.816	2e-54
91078052	165	PREDICTED: similar to CG40451 CG40451-PA	0.438	0.757	0.808	2e-54
340727758	159	PREDICTED: mitochondrial import inner me	0.438	0.786	0.816	2e-54
383849617	162	PREDICTED: mitochondrial import inner me	0.438	0.771	0.8	2e-54
350418163	159	PREDICTED: mitochondrial import inner me	0.438	0.786	0.808	4e-54
345489360	163	PREDICTED: mitochondrial import inner me	0.438	0.766	0.808	5e-54
332376989	164	unknown [Dendroctonus ponderosae]	0.438	0.762	0.808	6e-54
242003709	165	mitochondrial import inner membrane tran	0.438	0.757	0.808	2e-53
195446435	173	GK12238 [Drosophila willistoni] gi|19416	0.438	0.722	0.808	5e-53

>gi|270002311|gb|EEZ98758.1| hypothetical protein TcasGA2_TC001322 [Tribolium castaneum]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 116/136 (85%)

Query: 144 LVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFL 203
           ++ +E    + +EEY REPCPWRIVDDCGGAFTMGLIGG +F  IKGFRNAPSG NRRF+
Sbjct: 2   VLFLENAWSLLMEEYTREPCPWRIVDDCGGAFTMGLIGGGVFQSIKGFRNAPSGFNRRFV 61

Query: 204 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGV 263
           G    IKQ+SPI+AGNFAVWG MFSTIDC+L+++RKKEDPWNSIISGAATGGILAARNG+
Sbjct: 62  GSLAAIKQRSPIIAGNFAVWGGMFSTIDCALIHIRKKEDPWNSIISGAATGGILAARNGL 121

Query: 264 PAMAGSALIGGKLKRL 279
           PAMAGSA IGG L  L
Sbjct: 122 PAMAGSAFIGGVLLAL 137

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778455|ref|XP_003249498.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A isoform 1 [Apis mellifera] gi|328778457|ref|XP_003249499.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A isoform 2 [Apis mellifera] gi|328778459|ref|XP_003249500.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A isoform 3 [Apis mellifera] gi|380028326|ref|XP_003697856.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like [Apis florea]

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 114/125 (91%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRI+DDCGGAFTMG IGGA+F  IKGFRNAPSG+N+R LG  T IKQKSP
Sbjct: 1   MEEYAREPCPWRIIDDCGGAFTMGAIGGAVFQTIKGFRNAPSGINKRVLGSLTAIKQKSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFA+WG MFSTIDC+LV++RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IGG
Sbjct: 61  IIAGNFALWGGMFSTIDCTLVHLRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078052|ref|XP_971201.1| PREDICTED: similar to CG40451 CG40451-PA [Tribolium castaneum]

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 111/125 (88%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEY REPCPWRIVDDCGGAFTMGLIGG +F  IKGFRNAPSG NRRF+G    IKQ+SP
Sbjct: 1   MEEYTREPCPWRIVDDCGGAFTMGLIGGGVFQSIKGFRNAPSGFNRRFVGSLAAIKQRSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFAVWG MFSTIDC+L+++RKKEDPWNSIISGAATGGILAARNG+PAMAGSA IGG
Sbjct: 61  IIAGNFAVWGGMFSTIDCALIHIRKKEDPWNSIISGAATGGILAARNGLPAMAGSAFIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727758|ref|XP_003402203.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like isoform 1 [Bombus terrestris] gi|340727760|ref|XP_003402204.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like isoform 2 [Bombus terrestris]

 Score =  218 bits (556), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 113/125 (90%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRI+DDCGGAFTMG IGGA+F  IKGFRNAPSG+N+R LG    IKQKSP
Sbjct: 1   MEEYAREPCPWRIIDDCGGAFTMGAIGGAVFQSIKGFRNAPSGINKRVLGSLIAIKQKSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFA+WG MFSTIDCSLV++RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IGG
Sbjct: 61  IIAGNFALWGGMFSTIDCSLVHLRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849617|ref|XP_003700441.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-B-like [Megachile rotundata]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/125 (80%), Positives = 114/125 (91%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG IGGA+F  IKGFRNAPSG+N+RF+G    +KQ+SP
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGAIGGAVFQSIKGFRNAPSGLNKRFMGSLMAVKQRSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFA+WG MFSTIDC+LV++RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IGG
Sbjct: 61  IIAGNFALWGGMFSTIDCTLVHLRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418163|ref|XP_003491766.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-A-like [Bombus impatiens]

 Score =  217 bits (553), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 113/125 (90%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRI+DDCGGAFTMG IGGA+F  IKGFRNAPSG+N+R LG    IKQKSP
Sbjct: 1   MEEYAREPCPWRIIDDCGGAFTMGAIGGAVFQSIKGFRNAPSGINKRVLGSLIAIKQKSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFA+WG MFSTIDC+LV++RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IGG
Sbjct: 61  IIAGNFALWGGMFSTIDCTLVHLRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489360|ref|XP_003426117.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim17-B-like [Nasonia vitripennis]

 Score =  217 bits (552), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 112/125 (89%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG IGGA+F  IKGFRNAPSG+N+RF G    IKQ+SP
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGAIGGAVFQSIKGFRNAPSGLNKRFTGSLMAIKQRSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFA+WG MFSTIDC+LV+ RKKEDPWNSIISGAATGGILAARNG+PAMAGSA+IGG
Sbjct: 61  IIAGNFAIWGGMFSTIDCTLVHFRKKEDPWNSIISGAATGGILAARNGLPAMAGSAIIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376989|gb|AEE63634.1| unknown [Dendroctonus ponderosae]

 Score =  216 bits (551), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 110/125 (88%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEY REPCPWRIVDDCGGAFTMGLIGG +F  IKGFRNAPSG+NRR LG    IKQ+SP
Sbjct: 1   MEEYTREPCPWRIVDDCGGAFTMGLIGGGVFQSIKGFRNAPSGINRRLLGSLVAIKQRSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFAVWG MFSTIDC+L++ RKKEDPWNSIISGAATGGILAARNG+PAMAGSA IGG
Sbjct: 61  IIAGNFAVWGGMFSTIDCALIHARKKEDPWNSIISGAATGGILAARNGLPAMAGSAFIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003709|ref|XP_002422830.1| mitochondrial import inner membrane translocase subunit Tim17-B, putative [Pediculus humanus corporis] gi|212505700|gb|EEB10092.1| mitochondrial import inner membrane translocase subunit Tim17-B, putative [Pediculus humanus corporis]

 Score =  215 bits (548), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 111/125 (88%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCPWRIVDDCGGAFTMG+IGG +F  IKGFRNAPSG++RR LG    IKQ+SP
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGMIGGGVFQTIKGFRNAPSGISRRLLGSLDAIKQRSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           I+AGNFAVWG MFSTIDC+LV+ RKKEDPWNSIISGAATGGILAARNG+PAMAGSA IGG
Sbjct: 61  IVAGNFAVWGGMFSTIDCTLVHFRKKEDPWNSIISGAATGGILAARNGLPAMAGSAFIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 ALLAL 125

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446435|ref|XP_002070779.1| GK12238 [Drosophila willistoni] gi|194166864|gb|EDW81765.1| GK12238 [Drosophila willistoni]

 Score =  214 bits (544), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/125 (80%), Positives = 110/125 (88%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEYAREPCP+RIVDDCGGAF MG IGG +F  IKGFRNAPSGMNRR LG  T IK +SP
Sbjct: 1   MEEYAREPCPFRIVDDCGGAFAMGCIGGGVFQAIKGFRNAPSGMNRRLLGSLTAIKTRSP 60

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           ++AGNFAVWG MFSTIDC+LV+ RKKEDPWNSIISGAATGGILAARNGVPAMAGSA+IGG
Sbjct: 61  VIAGNFAVWGGMFSTIDCTLVHFRKKEDPWNSIISGAATGGILAARNGVPAMAGSAIIGG 120

Query: 275 KLKRL 279
            L  L
Sbjct: 121 VLLAL 125

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
FB|FBgn0263977	173	Tim17b [Drosophila melanogaste	0.438	0.722	0.784	2.4e-51
FB|FBgn0020371	478	Tim17b2 "Translocase inner mem	0.428	0.255	0.696	7.9e-46
FB|FBgn0031164	185	CG1724 [Drosophila melanogaste	0.428	0.659	0.688	1.6e-45
ZFIN|ZDB-GENE-031030-6	201	timm17a "translocase of inner	0.442	0.626	0.690	1.5e-44
UNIPROTKB|G3N1S8	171	TIMM17A "Uncharacterized prote	0.438	0.730	0.688	2.4e-44
MGI|MGI:1343131	171	Timm17a "translocase of inner	0.438	0.730	0.688	3.1e-44
UNIPROTKB|E2R659	171	TIMM17A "Uncharacterized prote	0.438	0.730	0.696	3.9e-44
UNIPROTKB|Q99595	171	TIMM17A "Mitochondrial import	0.438	0.730	0.696	3.9e-44
RGD|3862	171	Timm17a "translocase of inner	0.438	0.730	0.68	8.1e-44
UNIPROTKB|F1NM85	166	TIMM17A "Uncharacterized prote	0.438	0.753	0.672	4.5e-43

FB|FBgn0263977 Tim17b [Drosophila melanogaster (taxid:7227)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 98/125 (78%), Positives = 109/125 (87%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEYAREPCP+RIVDDCGGAF MG IGG +F  IKGFRNAPSG+NRR +G    IK +SP
Sbjct:     1 MEEYAREPCPYRIVDDCGGAFAMGCIGGGVFQAIKGFRNAPSGLNRRLVGSIIAIKTRSP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
             ++AGNFAVWG MFSTIDC+LV+ RKKEDPWNSIISGAATGGILAARNGVPAMAGSA+IGG
Sbjct:    61 VIAGNFAVWGGMFSTIDCTLVHFRKKEDPWNSIISGAATGGILAARNGVPAMAGSAIIGG 120

Query:   275 KLKRL 279
              L  L
Sbjct:   121 VLLAL 125

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

FB|FBgn0020371 Tim17b2 "Translocase inner membrane 17" [Drosophila melanogaster (taxid:7227)]

 Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
 Identities = 85/122 (69%), Positives = 100/122 (81%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEY+REPCP RIVDDCGGAF MG +GG LF G+KGFRNAP G+ RR  G    IK KSP
Sbjct:     1 MEEYSREPCPHRIVDDCGGAFIMGCVGGGLFQGLKGFRNAPQGLGRRVAGSVAAIKTKSP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
             ++ G+FA WGA+FS +DCSLV+ R+KEDPWNSI+SGA TGGILA+RNG  AMAGSA+IGG
Sbjct:    61 VIGGSFAAWGAVFSIVDCSLVHFRQKEDPWNSIVSGAVTGGILASRNGAAAMAGSAIIGG 120

Query:   275 KL 276
              L
Sbjct:   121 VL 122

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

FB|FBgn0031164 CG1724 [Drosophila melanogaster (taxid:7227)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 84/122 (68%), Positives = 100/122 (81%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEY+REPCP+RIVDDCGGAFTMG  GG LF G+KGFRNAP G+ RRF G    +K +SP
Sbjct:     1 MEEYSREPCPFRIVDDCGGAFTMGCFGGGLFQGLKGFRNAPQGLKRRFAGGLAAVKSRSP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
              + GNFA WG +FS +DCSLV++RKKEDPWNSI+SGA  GGIL++RNGV AM GSA+IGG
Sbjct:    61 TIGGNFAAWGCVFSIVDCSLVHLRKKEDPWNSIMSGAIAGGILSSRNGVAAMFGSAIIGG 120

Query:   275 KL 276
              L
Sbjct:   121 VL 122

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

ZFIN|ZDB-GENE-031030-6 timm17a "translocase of inner mitochondrial membrane 17 homolog A (yeast)" [Danio rerio (taxid:7955)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 87/126 (69%), Positives = 98/126 (77%)

Query:   154 ELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKS 213
             ++EEYAREPCPWRIVDDCGGAFTMG IGG +F  +KGFRN+PSGMN R  G  T I+ ++
Sbjct:    35 KMEEYAREPCPWRIVDDCGGAFTMGAIGGGIFQAVKGFRNSPSGMNHRMKGSLTAIRTRA 94

Query:   214 PILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIG 273
             P L G+FAVWG +FS IDC LV VR KEDPWNSI SGA TG ILAARNG  AM GSA +G
Sbjct:    95 PQLGGSFAVWGGLFSMIDCGLVKVRGKEDPWNSITSGAMTGAILAARNGPVAMVGSAAMG 154

Query:   274 GKLKRL 279
             G L  L
Sbjct:   155 GILLAL 160

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3N1S8 TIMM17A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 86/125 (68%), Positives = 97/125 (77%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEYAREPCPWRIVDDCGGAFTMG IGG +F  IKGFRN+P G+N R  G  T IK ++P
Sbjct:     1 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
              L G+FAVWG +FS IDCS+V +R KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct:    61 QLGGSFAVWGGLFSMIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAVGG 120

Query:   275 KLKRL 279
              L  L
Sbjct:   121 VLLAL 125

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:1343131 Timm17a "translocase of inner mitochondrial membrane 17a" [Mus musculus (taxid:10090)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 86/125 (68%), Positives = 97/125 (77%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEYAREPCPWRIVDDCGGAFTMG IGG +F   KGFRN+P G+N R  G  T IK ++P
Sbjct:     1 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
              L G+FAVWG +FSTIDCS+V +R KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct:    61 QLGGSFAVWGGLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query:   275 KLKRL 279
              L  L
Sbjct:   121 ILLAL 125

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E2R659 TIMM17A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 87/125 (69%), Positives = 97/125 (77%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEYAREPCPWRIVDDCGGAFTMG IGG +F  IKGFRN+P G+N R  G  T IK ++P
Sbjct:     1 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
              L G+FAVWG +FS IDCS+V VR KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct:    61 QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query:   275 KLKRL 279
              L  L
Sbjct:   121 ILLAL 125

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q99595 TIMM17A "Mitochondrial import inner membrane translocase subunit Tim17-A" [Homo sapiens (taxid:9606)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 87/125 (69%), Positives = 97/125 (77%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEYAREPCPWRIVDDCGGAFTMG IGG +F  IKGFRN+P G+N R  G  T IK ++P
Sbjct:     1 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
              L G+FAVWG +FS IDCS+V VR KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct:    61 QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query:   275 KLKRL 279
              L  L
Sbjct:   121 ILLAL 125

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IDA

RGD|3862 Timm17a "translocase of inner mitochondrial membrane 17 homolog A (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 85/125 (68%), Positives = 96/125 (76%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEYAREPCPWRIVDDCGGAFTMG IGG +F   KGFRN+P G+N R  G  T IK ++P
Sbjct:     1 MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
              L G+FAVWG +FSTIDC +V +R KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct:    61 QLGGSFAVWGGLFSTIDCGMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query:   275 KLKRL 279
              L  L
Sbjct:   121 ILLAL 125

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA;ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

UNIPROTKB|F1NM85 TIMM17A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 84/125 (67%), Positives = 96/125 (76%)

Query:   155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
             +EEYAREPCPWRIVDDCGGAFTMG IGG +F  IKGFRN+P G+N R  G    +K ++P
Sbjct:     1 MEEYAREPCPWRIVDDCGGAFTMGAIGGGIFQAIKGFRNSPVGVNHRLRGSLAAVKTRAP 60

Query:   215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
              L G+FAVWG +FS IDCS+V +R KEDPWNSI SGA TG ILAARNG  AM GSA +GG
Sbjct:    61 QLGGSFAVWGGLFSMIDCSMVRMRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query:   275 KLKRL 279
              L  L
Sbjct:   121 ILLAL 125

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z0V8	TI17A_MOUSE	No assigned EC number	0.688	0.4385	0.7309	yes	N/A
O44477	TIM17_CAEEL	No assigned EC number	0.5378	0.4105	0.6464	yes	N/A
Q99595	TI17A_HUMAN	No assigned EC number	0.696	0.4385	0.7309	yes	N/A
O35092	TI17A_RAT	No assigned EC number	0.68	0.4385	0.7309	yes	N/A
P87130	TIM17_SCHPO	No assigned EC number	0.5283	0.3649	0.6341	yes	N/A
P39515	TIM17_YEAST	No assigned EC number	0.5660	0.3649	0.6582	yes	N/A
Q9SP35	TI172_ARATH	No assigned EC number	0.5691	0.4245	0.4979	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	285
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	2e-58
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	3e-51
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	5e-36
TIGR00980	170	TIGR00980, 3a0801so1tim17, mitochondrial import in	3e-29
PTZ00236	164	PTZ00236, PTZ00236, mitochondrial import inner mem	9e-26
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	3e-22
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	7e-17
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	7e-09
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	7e-06
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	8e-06
COG5596	191	COG5596, TIM22, Mitochondrial import inner membran	2e-05

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score =  183 bits (467), Expect = 2e-58
 Identities = 73/122 (59%), Positives = 89/122 (72%), Gaps = 2/122 (1%)

Query: 155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSP 214
           +EEY REPCP+RI+DD GGAF MG IGG++F   KGFRN+P G      G    IK ++P
Sbjct: 1   MEEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLV--GAMRAIKTRAP 58

Query: 215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           +L GNFAVWG +FSTIDC++V +RKKEDPWNSIISG  TG  LA R G  AM GSA++G 
Sbjct: 59  VLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGA 118

Query: 275 KL 276
            +
Sbjct: 119 CI 120

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score =  165 bits (419), Expect = 3e-51
 Identities = 62/116 (53%), Positives = 84/116 (72%), Gaps = 2/116 (1%)

Query: 159 AREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAG 218
           +REPCP RI++D GGAF+MG IGG ++H +KG RN+P G   RF G    +++++PIL G
Sbjct: 7   SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKG--ERFSGGFYLLRKRAPILGG 64

Query: 219 NFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           NFA+WG +FST DC+L Y+R KED WN+I SG  TGG+LA R G  +   +A+ GG
Sbjct: 65  NFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGG 120

Length = 164

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score =  125 bits (315), Expect = 5e-36
 Identities = 50/115 (43%), Positives = 64/115 (55%), Gaps = 2/115 (1%)

Query: 162 PCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAP--SGMNRRFLGMTTTIKQKSPILAGN 219
           PCP RIV D GG F MG + G  F    G  NA     +  R  G+     ++ P    N
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNN 60

Query: 220 FAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           FAV+G ++S I+C+L  +R KEDPWNSII+GA TG +L  R G  A A  A +G 
Sbjct: 61  FAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAAAVGAAVGA 115

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|130053 TIGR00980, 3a0801so1tim17, mitochondrial import inner membrane translocase subunit tim17

 Score =  108 bits (272), Expect = 3e-29
 Identities = 45/72 (62%), Positives = 54/72 (75%)

Query: 4   VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNG 63
           VG    IK ++P+L GNFAVWG +FSTIDC++V +RKKEDPWNSIISG  TG  LA R G
Sbjct: 47  VGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGG 106

Query: 64  VPAMAGSALIGG 75
             AM GSA++G 
Sbjct: 107 PRAMRGSAILGA 118

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 170

>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase subunit tim17; Provisional

 Score = 99.3 bits (248), Expect = 9e-26
 Identities = 36/71 (50%), Positives = 50/71 (70%)

Query: 5   GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGV 64
           G    +++++PIL GNFA+WG +FST DC+L Y+R KED WN+I SG  TGG+LA R G 
Sbjct: 50  GGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGW 109

Query: 65  PAMAGSALIGG 75
            +   +A+ GG
Sbjct: 110 RSAVRNAIFGG 120

Length = 164

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 88.9 bits (221), Expect = 3e-22
 Identities = 31/68 (45%), Positives = 42/68 (61%)

Query: 8   TTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAM 67
               ++ P    NFAV+G ++S I+C+L  +R KEDPWNSII+GA TG +L  R G  A 
Sbjct: 48  NATGRRGPSHGNNFAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGLRGGPKAA 107

Query: 68  AGSALIGG 75
           A  A +G 
Sbjct: 108 AVGAAVGA 115

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 76.4 bits (188), Expect = 7e-17
 Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 141 GENLVHVEATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNR 200
            E L          L    R+PCP   + D   AF+   IG +   G+KGFR    G + 
Sbjct: 8   LEQLSPPSPNAYNILSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRL--GGPSG 65

Query: 201 RFLGMTTTIKQKSPILAGNFA-VWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAA 259
            F            +L  NF  VWG +FSTIDC+   ++ KE   N+   G  TG  L  
Sbjct: 66  GFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGV 125

Query: 260 RNGV 263
              +
Sbjct: 126 LGLI 129

Length = 191

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 172 GGAFTMGLIGGALFHGIKGFRNAPSG-----MNRRFLGMTTTIKQKSPILAGNFAVWGAM 226
           G  +  GL  GAL     G +   S         + L M T   ++ P       +   +
Sbjct: 39  GTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVT---RRGPFWGNTLGILALV 95

Query: 227 FSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGG 274
           ++ I+  +   R K D +NS+ +GA TG +  +  G+  MA S  +G 
Sbjct: 96  YNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGA 143

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 10  IKQKSPILAGNFA-VWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGV 64
                 +L  NF  VWG +FSTIDC+   ++ KE   N+   G  TG  L     +
Sbjct: 74  GTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLI 129

Length = 191

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 16/72 (22%), Positives = 33/72 (45%)

Query: 4   VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNG 63
             +   + ++ P       +   +++ I+  +   R K D +NS+ +GA TG +  +  G
Sbjct: 72  NQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRG 131

Query: 64  VPAMAGSALIGG 75
           +  MA S  +G 
Sbjct: 132 LRGMARSGALGA 143

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

>gnl|CDD|227883 COG5596, TIM22, Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 13  KSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMA-GSA 71
           +      N  V G +++ I+  +  +R K D  N+I +GA TG  LA+  G  AM  G A
Sbjct: 115 RGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGA 174

Query: 72  LIG 74
              
Sbjct: 175 GFA 177

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	100.0
PTZ00236	164	mitochondrial import inner membrane translocase su	99.97
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.95
KOG1652|consensus	183		99.94
KOG3225|consensus	168		99.93
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.89
PTZ00236	164	mitochondrial import inner membrane translocase su	99.87
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.86
KOG3324|consensus	206		99.83
KOG1652|consensus	183		99.82
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.78
KOG3225|consensus	168		99.66
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.65
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.57
KOG3324|consensus	206		99.53
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.12
KOG4608|consensus	270		96.9
KOG4096|consensus	75		96.37
KOG1398|consensus	460		95.48
KOG4608|consensus	270		95.47
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	95.12

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=100.00  E-value=5.4e-33  Score=240.86  Aligned_cols=128  Identities=56%  Similarity=1.028  Sum_probs=121.4

Q ss_pred             HHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHH
Q psy13364        155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL  234 (285)
Q Consensus       155 ~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~l  234 (285)
                      |+|+.|||||+|++++++.+|.+|+++|+++++++|+||+|.+  +|+++.++.+++|+++++++||+||++|+++||++
T Consensus         1 ~~~~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g--~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i   78 (170)
T TIGR00980         1 MEEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKG--EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAV   78 (170)
T ss_pred             CcccccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCcc--chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999865  68999999999999999999999999999999999


Q ss_pred             HHHhhcCCchhHHHHHHHHhhhhcccCChHHHH-HHHHHHHHHHHHhhccC
Q psy13364        235 VYVRKKEDPWNSIISGAATGGILAARNGVPAMA-GSALIGGKLKRLDFNCL  284 (285)
Q Consensus       235 e~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~-g~a~~aAfs~aid~~~~  284 (285)
                      +++|+|||+||+++|||+||++|+.++|+++++ .|+..++++.+||+.++
T Consensus        79 ~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~~g~  129 (170)
T TIGR00980        79 VAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEGVGL  129 (170)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987 56778999999999874

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.97  E-value=2.5e-31  Score=229.02  Aligned_cols=114  Identities=53%  Similarity=1.003  Sum_probs=107.9

Q ss_pred             HHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHH
Q psy13364        155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL  234 (285)
Q Consensus       155 ~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~l  234 (285)
                      +.|+.|||||+|+++++|.+|.+|+++|+++++++|+||+|.+  +++++.++.+++|+|+++++||+||++|+++||++
T Consensus         3 ~~~~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g--~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~   80 (164)
T PTZ00236          3 ERDLSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKG--ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTL   80 (164)
T ss_pred             hhhhCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCc--chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999975  78999999999999999999999999999999999


Q ss_pred             HHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHH
Q psy13364        235 VYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSA  270 (285)
Q Consensus       235 e~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a  270 (285)
                      +++|+|||+||+++|||+||++|+.++||++++.++
T Consensus        81 ~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a  116 (164)
T PTZ00236         81 QYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNA  116 (164)
T ss_pred             HHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            999999999999999999999999999999865433

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.95  E-value=1.7e-27  Score=203.07  Aligned_cols=138  Identities=20%  Similarity=0.276  Sum_probs=116.4

Q ss_pred             cccCccccCCCCChHHHHHHh-hcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCc--chhhhhhHHHHHHhhhhh
Q psy13364        138 VNYGENLVHVEATPEVELEEY-AREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPS--GMNRRFLGMTTTIKQKSP  214 (285)
Q Consensus       138 lN~d~~l~~~~~~~e~~~~d~-~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~--~~k~r~~~~l~~~~~r~~  214 (285)
                      ||+|+.+++++.++...++.. -+..+.++....+|.+|.+|.++|+++++++|+++.|.  +.|+|+++++|++.++++
T Consensus         4 l~~~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~~~~~~k~rln~~ln~~~~~g~   83 (149)
T TIGR00983         4 LDKDPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQSMPWTKLRLNQILNMVTRRGP   83 (149)
T ss_pred             CCCCcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhHhH
Confidence            777877776554443332221 22356777888899999999999999999999998774  468999999999999999


Q ss_pred             hhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHHHHHHH
Q psy13364        215 ILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGK  275 (285)
Q Consensus       215 ~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a~~aAf  275 (285)
                      +++++||+|+++|+++||.++++|+|||+||+++|||+||++|++++||++++.+++++++
T Consensus        84 ~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~  144 (149)
T TIGR00983        84 FWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGAT  144 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHH
Confidence            9999999999999999999999999999999999999999999999999998755554443

>KOG1652|consensus

Probab=99.94  E-value=1e-28  Score=213.29  Aligned_cols=127  Identities=61%  Similarity=1.059  Sum_probs=119.3

Q ss_pred             HHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHH
Q psy13364        155 LEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSL  234 (285)
Q Consensus       155 ~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~l  234 (285)
                      ++|+.+|||+.+++++++..|.||++.|++|++++|++|+|.+  .|+.+.++.++.+++.+|++||+||++||.+||++
T Consensus         1 ~~e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G--~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~L   78 (183)
T KOG1652|consen    1 MMEYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSG--ARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCAL   78 (183)
T ss_pred             CCcccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcc--cccccchhhhhccCcccccceeeeechhhHHHHHH
Confidence            3577899999999999999999999999999999999999987  69999999999999999999999999999999999


Q ss_pred             HHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHHH-HHHHHHHHhhcc
Q psy13364        235 VYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSAL-IGGKLKRLDFNC  283 (285)
Q Consensus       235 e~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a~-~aAfs~aid~~~  283 (285)
                      ..+|+|||.||++++||+||++|+.++|+++++.+|+ +++++..+|-.+
T Consensus        79 v~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~g  128 (183)
T KOG1652|consen   79 VAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGLG  128 (183)
T ss_pred             HHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999999999999996655 788888888654

>KOG3225|consensus

Probab=99.93  E-value=1.7e-26  Score=195.79  Aligned_cols=135  Identities=25%  Similarity=0.301  Sum_probs=110.6

Q ss_pred             CCChHHHHHHhhcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcc-hhhhhhHHHHHHhhhhhhhhHHHHHHHHH
Q psy13364        148 EATPEVELEEYAREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSG-MNRRFLGMTTTIKQKSPILAGNFAVWGAM  226 (285)
Q Consensus       148 ~~~~e~~~~d~~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~-~k~r~~~~l~~~~~r~~~~g~~fa~iG~~  226 (285)
                      ..++++.......++|+.|++.+++.||++|.++|.+...+.-=.+.|+- .+.-+.+.++++.+|+.++++||+++|++
T Consensus        27 ~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlv  106 (168)
T KOG3225|consen   27 VGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLV  106 (168)
T ss_pred             cCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhh
Confidence            34555543333457999999999999999999996555444311244532 22233455799999999999999999999


Q ss_pred             HHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHH-HHHHHHHHHHHHHhhc
Q psy13364        227 FSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAM-AGSALIGGKLKRLDFN  282 (285)
Q Consensus       227 ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~-~g~a~~aAfs~aid~~  282 (285)
                      |+++||++|++|.|+||+|++++||+||+.++.|+||+++ ++|++|++||++||+.
T Consensus       107 fsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id~y  163 (168)
T KOG3225|consen  107 FSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAIDKY  163 (168)
T ss_pred             ehhHHHHHHHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999995 5999999999999985

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.89  E-value=1e-22  Score=167.82  Aligned_cols=122  Identities=33%  Similarity=0.640  Sum_probs=109.5

Q ss_pred             CCcchhhhhcchhhHHHHHHHHHHHhhhccccC--CcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhh
Q psy13364        162 PCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNA--PSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRK  239 (285)
Q Consensus       162 ~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~--p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~le~~Rg  239 (285)
                      ||++|++++++.++.+|.++|++....++....  ....+++++..++.+.+++++.+.+||.++++|+++||.+|++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            799999999999999999999998888543211  223567999999999999999999999999999999999999999


Q ss_pred             cCCchhHHHHHHHHhhhhcccCChHHHH-HHHHHHHHHHHHhhcc
Q psy13364        240 KEDPWNSIISGAATGGILAARNGVPAMA-GSALIGGKLKRLDFNC  283 (285)
Q Consensus       240 kdD~~Nsv~AG~~TGa~l~~~~G~~a~~-g~a~~aAfs~aid~~~  283 (285)
                      |||+||+++||++||++++.+.|++.++ +++++++++.++|+..
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~  125 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYG  125 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999976 6688999999999864

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.87  E-value=3e-22  Score=172.75  Aligned_cols=95  Identities=42%  Similarity=0.749  Sum_probs=86.0

Q ss_pred             hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-H--
Q psy13364          5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-E--   81 (285)
Q Consensus         5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e--   81 (285)
                      +.++.+++|+|.++++||+||++|+++||+++++|+|||+||+++|||+||++|+++.||++++.++++||+++++ |  
T Consensus        50 g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~  129 (164)
T PTZ00236         50 GGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELV  129 (164)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999887 5  


Q ss_pred             ---HhhhcCCCCCCCcchhhhhhccc
Q psy13364         82 ---LVLLFEPAPNQGTSIISFYNFLT  104 (285)
Q Consensus        82 ---~~~~~~~~p~~~~~~~~~~~~~~  104 (285)
                         ++|..++.|++     .|++.+.
T Consensus       130 ~i~~~~~~~~~~~~-----~~~~~~~  150 (164)
T PTZ00236        130 SIGMNRRQMRTPRQ-----QFQQQQE  150 (164)
T ss_pred             HHHHHHHhhhhhhH-----HHHHHHH
Confidence               67777766665     4555543

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.86  E-value=1.4e-21  Score=169.67  Aligned_cols=78  Identities=59%  Similarity=1.027  Sum_probs=76.2

Q ss_pred             chhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-H
Q psy13364          4 VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-E   81 (285)
Q Consensus         4 ~~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e   81 (285)
                      ++.++++++|+|+++++||+||++|+++||+++++|+|||+||+++|||+||++|++|+|+++++.+|+++|+++++ |
T Consensus        47 ~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie  125 (170)
T TIGR00980        47 VGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIE  125 (170)
T ss_pred             hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999988 6

>KOG3324|consensus

Probab=99.83  E-value=6.8e-21  Score=166.79  Aligned_cols=140  Identities=20%  Similarity=0.222  Sum_probs=113.2

Q ss_pred             CccccccccCccccCCCCChHHHHHHhhc--CCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCc--chhhhhhHHHH
Q psy13364        132 PVMERYVNYGENLVHVEATPEVELEEYAR--EPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPS--GMNRRFLGMTT  207 (285)
Q Consensus       132 ~~~~~YlN~d~~l~~~~~~~e~~~~d~~~--e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~--~~k~r~~~~l~  207 (285)
                      ..+|+|+|.|+.+..+++++....+|-..  ....+.....+|.++..|.++|++.+.+.|+++.+.  ..|.|++.+||
T Consensus        40 ~~ld~~~n~d~ly~~~~~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e~~~~~Klr~nrILN  119 (206)
T KOG3324|consen   40 QPLDKPLNVDYLYLLPDQPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTENGASGKLRLNRILN  119 (206)
T ss_pred             cccccccccchhhhccCCccccCchhccccccchhhhhheeccchhccchhhhhHHHHHHhhhcCCCCCccchhHHHHhh
Confidence            34788898888887777666443333321  224444555567777777777788888888887765  36899999999


Q ss_pred             HHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHHHHHHH
Q psy13364        208 TIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSAL  271 (285)
Q Consensus       208 ~~~~r~~~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~g~a~  271 (285)
                      ++.++++.++++.++++.+|+++|..+++.|+|||++|+|.||++||+++++..|+|+++.+++
T Consensus       120 ~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga  183 (206)
T KOG3324|consen  120 SVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGA  183 (206)
T ss_pred             hccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999764433

>KOG1652|consensus

Probab=99.82  E-value=5.9e-21  Score=165.23  Aligned_cols=78  Identities=59%  Similarity=1.022  Sum_probs=75.8

Q ss_pred             chhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-H
Q psy13364          4 VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-E   81 (285)
Q Consensus         4 ~~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e   81 (285)
                      +|.++.+++|+|.+|++||+||++||.+||++..+|+|||+||++++|++||++|+.|.|+++++.+|+++|+++++ |
T Consensus        47 ~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~KeDpwNsivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamie  125 (183)
T KOG1652|consen   47 VGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKKEDPWNSIVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIE  125 (183)
T ss_pred             ccchhhhhccCcccccceeeeechhhHHHHHHHHHhcccchHHHHHHHhhccceeeccccHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999988 6

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.78  E-value=4e-19  Score=151.69  Aligned_cols=76  Identities=21%  Similarity=0.447  Sum_probs=73.4

Q ss_pred             hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364          5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL   80 (285)
Q Consensus         5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~   80 (285)
                      +++|++++|++++|++||+||++|+++||.++++|+|||+||+++||++||++++.++||++++.+|+++++++++
T Consensus        73 ~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~~  148 (149)
T TIGR00983        73 QILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKSTRGLRGMARSGALGATAAGV  148 (149)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhhc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999998753

>KOG3225|consensus

Probab=99.66  E-value=2.3e-17  Score=140.38  Aligned_cols=76  Identities=32%  Similarity=0.409  Sum_probs=72.2

Q ss_pred             hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364          5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL   80 (285)
Q Consensus         5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~   80 (285)
                      ++.++|..|+.+++++|+++|++|+++||++|++|.|+||+|++++||+||+.++.|+||++++.+|...++++++
T Consensus        84 q~~kdMg~r~~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~  159 (168)
T KOG3225|consen   84 QVAKDMGQRSGSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAA  159 (168)
T ss_pred             HHHHHHHhhhcchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHH
Confidence            3459999999999999999999999999999999999999999999999999999999999999999998888877

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.65  E-value=4.1e-16  Score=128.44  Aligned_cols=81  Identities=33%  Similarity=0.644  Sum_probs=75.4

Q ss_pred             chhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH-HH
Q psy13364          4 VGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL-EL   82 (285)
Q Consensus         4 ~~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~-e~   82 (285)
                      ..+++.++++++.++.+||.++++|+++||.++++|+|||+||++++|++||++++.+.|++.++.++++++++.++ |+
T Consensus        44 ~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~k~D~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~  123 (128)
T PF02466_consen   44 RSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRGKDDPWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEY  123 (128)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence            36788888899999999999999999999999999999999999999999999999999999999999999999877 74


Q ss_pred             hh
Q psy13364         83 VL   84 (285)
Q Consensus        83 ~~   84 (285)
                      .+
T Consensus       124 ~~  125 (128)
T PF02466_consen  124 YG  125 (128)
T ss_pred             Hh
Confidence            43

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=3.7e-16  Score=136.12  Aligned_cols=144  Identities=21%  Similarity=0.248  Sum_probs=110.9

Q ss_pred             cccCccccCCCCChHH--HHHHh---hcCCCcchhhhhcchhhHHHHHHHHHHHhhh------------------ccccC
Q psy13364        138 VNYGENLVHVEATPEV--ELEEY---AREPCPWRIVDDCGGAFTMGLIGGALFHGIK------------------GFRNA  194 (285)
Q Consensus       138 lN~d~~l~~~~~~~e~--~~~d~---~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~------------------G~r~~  194 (285)
                      -|.+.+++.++.+|-.  ...+.   ..+.|+.+.+.+...||.+|...|.....+.                  |+.+.
T Consensus        16 ~~~~~~lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~   95 (191)
T COG5596          16 PNAYNILSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFST   95 (191)
T ss_pred             CCcccccChhhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeec
Confidence            4555566555444422  22222   2257888888888888888776643322221                  11111


Q ss_pred             C--cchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHHH-HHHH
Q psy13364        195 P--SGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMA-GSAL  271 (285)
Q Consensus       195 p--~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~~-g~a~  271 (285)
                      .  .+.|+|++.+++.+.+|++.+|++||++|.+|.+.||.++.+|+|||+.|++.+|..||+.++.+.|++++. +.++
T Consensus        96 i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~  175 (191)
T COG5596          96 IDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAG  175 (191)
T ss_pred             cccchHHHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccc
Confidence            1  135789999999999999999999999999999999999999999999999999999999999999999975 7799


Q ss_pred             HHHHHHHHhh
Q psy13364        272 IGGKLKRLDF  281 (285)
Q Consensus       272 ~aAfs~aid~  281 (285)
                      ++|++..++.
T Consensus       176 ~aa~s~~~~~  185 (191)
T COG5596         176 FAAFSAGITL  185 (191)
T ss_pred             hhhhhhhHHh
Confidence            9999998875

>KOG3324|consensus

Probab=99.53  E-value=1.6e-14  Score=126.95  Aligned_cols=76  Identities=22%  Similarity=0.422  Sum_probs=73.8

Q ss_pred             hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364          5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL   80 (285)
Q Consensus         5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~   80 (285)
                      .+||++++|++..+++.++++.+|+.+|+.+++.|+|||++|+++||++||+++....|+|++.+++++++.++++
T Consensus       116 rILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~~Glr~~av~ga~g~~aa~a  191 (206)
T KOG3324|consen  116 RILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAA  191 (206)
T ss_pred             HHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999888866

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=9.3e-12  Score=108.78  Aligned_cols=76  Identities=24%  Similarity=0.253  Sum_probs=71.4

Q ss_pred             hhhHHHhhhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHHHH
Q psy13364          5 GMTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVRTL   80 (285)
Q Consensus         5 ~~l~~~~~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~~~   80 (285)
                      .+++++..|++++|+++|+.|.+|++.||+++.+|+|||+.|++.+|..||+.++.+.|+|++..+.+..+++++.
T Consensus       107 ~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~  182 (191)
T COG5596         107 EQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAGPQAMPMGGAGFAAFSAG  182 (191)
T ss_pred             hccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhccccccccCccchhhhhhh
Confidence            4678899999999999999999999999999999999999999999999999999999999999988887777755

>KOG4608|consensus

Probab=96.90  E-value=0.00021  Score=65.36  Aligned_cols=62  Identities=19%  Similarity=0.228  Sum_probs=52.6

Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHhHHhHHHHHhhcCCchhHHHHHHHHhhhhcccCChHHH
Q psy13364        205 MTTTIKQKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAM  266 (285)
Q Consensus       205 ~l~~~~~r~~~~g~~fa~iG~~ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l~~~~G~~a~  266 (285)
                      ..+.+.+-+...|-..|.+...|-++...+.-+|+|||.||-++||.+||++++..-|++-+
T Consensus       123 air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~  184 (270)
T KOG4608|consen  123 AIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGL  184 (270)
T ss_pred             HHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHH
Confidence            33435555667777888899999999999999999999999999999999999998887653

>KOG4096|consensus

Probab=96.37  E-value=0.0023  Score=48.27  Aligned_cols=70  Identities=29%  Similarity=0.386  Sum_probs=57.8

Q ss_pred             hcCCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHHhH
Q psy13364        159 AREPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTIDCS  233 (285)
Q Consensus       159 ~~e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~ec~  233 (285)
                      .+++|..|+-+.+..|..+|...|.+|+.++.+|..|.+     ++.++.+.+-....+.+|+.+-++=+.+.|.
T Consensus         3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g-----~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRG-----RGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCCh-----hHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            457899999999999999999999999999998876644     4566667777888899999988887777775

>KOG1398|consensus

Probab=95.48  E-value=0.32  Score=47.88  Aligned_cols=225  Identities=17%  Similarity=0.212  Sum_probs=113.8

Q ss_pred             HHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhh---hhccCChhHH--HHHHHHHHHHHHH---HHhhhcCCCCCC
Q psy13364         21 FAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGI---LAARNGVPAM--AGSALIGGKVRTL---ELVLLFEPAPNQ   92 (285)
Q Consensus        21 fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~---l~~~~G~~~~--~~~a~~gg~~~~~---e~~~~~~~~p~~   92 (285)
                      +.--.+.|-...|.+.+.++|.-+||+..+|++.+.-   |--|.-.++.  +.-+= .+.-+..   +.+-+...-|..
T Consensus        85 lvtn~~~f~al~C~lRkwlgkftp~t~glv~s~las~iaiLvErksRRplltlylan-lA~e~~~~~a~~hgwvr~~~~G  163 (460)
T KOG1398|consen   85 LVTNTGSFHALRCCLRKWLGKFTPLTSGLVGSVLASSIAILVERKSRRPLLTLYLAN-LAYESAKSKAKFHGWVRHWRHG  163 (460)
T ss_pred             eeechHHHHHHHHHHHHHhcccCcccHHHHHHHHhhhhhhhhccccccchHHHHHHH-HHHHHHHHHHHhceeeEecCCC
Confidence            3344567888899999999999999999999988733   3333322222  21111 1111111   122234445555


Q ss_pred             CcchhhhhhcccchhhhhhhcCCccceeeeccccccccCCccccccccCccccCCCCC-----------hH--H-HHHHh
Q psy13364         93 GTSIISFYNFLTYRYRWIYLRGHRPLTYGYNKSKELRSSPVMERYVNYGENLVHVEAT-----------PE--V-ELEEY  158 (285)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YlN~d~~l~~~~~~-----------~e--~-~~~d~  158 (285)
                      +.=+-++-   ---.+|||..|. .++=-||.--..--...-.+|+..++..+.....           .+  + .-+++
T Consensus       164 ~~llfg~~---~aal~yi~~~g~-tlpksFn~f~~~agke~~~e~~~~~~~ekg~p~n~~~~~~f~~vr~fv~~~~~~~~  239 (460)
T KOG1398|consen  164 DSLLFGLA---CAALMYIFIMGP-TLPKSFNEFIQKAGKEARPEYQAVRECEKGGPINVASLSAFISVRNFVSDVKVEEF  239 (460)
T ss_pred             CchhhhHH---HHHHHHHHhcCC-CCCccchHHHHHhcccccCchhhcccccCCCCCCcchhhHHHHHHHHHHHHHhhhc
Confidence            43332221   234678887776 3443344221111112233565554444432222           01  1 12232


Q ss_pred             hc-CCCcchhhhhcchhhHHHHHHHHHHHhhhcc------ccCCcc---hhh--hhhHHHHHHhhhhhhhhHHHHHHHHH
Q psy13364        159 AR-EPCPWRIVDDCGGAFTMGLIGGALFHGIKGF------RNAPSG---MNR--RFLGMTTTIKQKSPILAGNFAVWGAM  226 (285)
Q Consensus       159 ~~-e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~------r~~p~~---~k~--r~~~~l~~~~~r~~~~g~~fa~iG~~  226 (285)
                      .+ |+|. ++-+.|.+=-+.|.+    -.|..|+      +-.|..   .++  ++...+  .-+..-+.+.=.+.+-++
T Consensus       240 akhe~C~-h~hsnCisys~~gfi----k~f~~g~~lq~~Lt~v~nvr~i~~~pm~l~sll--~nrenlqlg~FlgsfvfI  312 (460)
T KOG1398|consen  240 AKHEPCA-HIHSNCISYSANGFI----KTFKKGFPLQFSLTFVPNVRLILQKPMALTSLL--ANRENLQLGSFLGSFVFI  312 (460)
T ss_pred             ccccccc-CCCchHHHHHHHHhH----hhcccceeeEEEEEecHHHHHHhcCchhhhhHh--hccccchhhHHHHHHHHH
Confidence            22 4553 333333222222222    2222222      111110   001  111111  112233556667889999


Q ss_pred             HHhHHhHHHHHhhcCCchhHHHHHHHHhhhh
Q psy13364        227 FSTIDCSLVYVRKKEDPWNSIISGAATGGIL  257 (285)
Q Consensus       227 ys~~ec~le~~RgkdD~~Nsv~AG~~TGa~l  257 (285)
                      |-++.|.+.+++-+||..|++.||.+++.-+
T Consensus       313 fkatsC~lr~v~n~dd~l~aifAgglAs~Sm  343 (460)
T KOG1398|consen  313 FKATSCALRKVANKDDKLVAIFAGGLASLSM  343 (460)
T ss_pred             HHhHHHHHHHhccCcHHHHHHHHhhhhhhee
Confidence            9999999999999999999999999988543

>KOG4608|consensus

Probab=95.47  E-value=0.0031  Score=57.80  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=54.4

Q ss_pred             hhcccchhhHHHHHHHHhhHhHHHHHHHhccCchhHHHHHHHhhhhhhccCChhHHHHHHHHHHHHH
Q psy13364         12 QKSPILAGNFAVWGAMFSTIDCSLVYVRKKEDPWNSIISGAATGGILAARNGVPAMAGSALIGGKVR   78 (285)
Q Consensus        12 ~r~~~~g~~fa~~g~~ys~~e~~~~~~R~k~D~~N~~~aG~~tGa~l~~~~G~~~~~~~a~~gg~~~   78 (285)
                      +-+-..|=..|++-+.|-+....+.-+|+|+|.||=+++|.+||+++...-|.+-.+.+.++|+++-
T Consensus       129 rGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~gL~g~aa~vilG~~lG  195 (270)
T KOG4608|consen  129 RGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVGLRGLAAGVILGALLG  195 (270)
T ss_pred             hccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehhhHHHhhcceeehhhc
Confidence            3345566677889999999999999999999999999999999999999988766665555554443

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=95.12  E-value=0.023  Score=42.56  Aligned_cols=66  Identities=21%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             CCCcchhhhhcchhhHHHHHHHHHHHhhhccccCCcchhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhHH
Q psy13364        161 EPCPWRIVDDCGGAFTMGLIGGALFHGIKGFRNAPSGMNRRFLGMTTTIKQKSPILAGNFAVWGAMFSTID  231 (285)
Q Consensus       161 e~C~~r~~~s~g~G~~~G~~~Gg~~~~~~G~r~~p~~~k~r~~~~l~~~~~r~~~~g~~fa~iG~~ys~~e  231 (285)
                      ++|..|+.+....|..+|...|.+++.++.+|.-+.     -++.++.+.+..-..+.+|+.+=.+=+.+.
T Consensus         1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~-----~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IR   66 (67)
T PF10247_consen    1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGAR-----GRGLMRTLGKYMLGSGATFGFFMSIGSVIR   66 (67)
T ss_pred             CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCC-----CcchHhHHhHHHhcchhHHHHHHhhhcccc
Confidence            479999999999999999999999999988875432     245667777777788888887655544443

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00