Psyllid ID: psy13695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
madpriktlkIKTGVLKRIAKEKTTYIKEVGIEQERYEKfksegsdefkLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDseqdlkdtEDYTIALQILDDAQKEIEKA
Flexible Loop (DISEMBL)
madpriktlkiktgvlkriakekttyikevgieqeryekfksegsdefklKKQLEVIQESQMMIPECQRRMVRAYEELKSIldseqdlkdTEDYTIALQILDDAQKEIEKA
Low Complexity Region (SEG)
MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA
Disordered region (IsUnstruct)
*******TLKIKTGVLKRIAKEKTTYIKEVGIE******************************IPECQRRMVRAYEELKSI**********EDYTIALQIL**********
Disordered Region (DISOPRED)
***PRIKTLKIKTGVLKRIAKEKTTYIKEVGI**********EGS*EFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILD*********DYTIALQILDDAQK*****
Disordered Region (DISEMBL)
MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA
Disordered Region (DISPRO)
*ADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEI***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
Q6PEC1	108	Tubulin-specific chaperon	yes	N/A	0.918	0.944	0.519	4e-24
P48428	108	Tubulin-specific chaperon	yes	N/A	0.918	0.944	0.5	1e-23
O75347	108	Tubulin-specific chaperon	yes	N/A	0.918	0.944	0.5	4e-23
P48427	108	Tubulin-specific chaperon	yes	N/A	0.918	0.944	0.5	8e-23
P80584	108	Tubulin-specific chaperon	yes	N/A	0.918	0.944	0.5	8e-23
P80585	108	Tubulin-specific chaperon	yes	N/A	0.702	0.722	0.551	9e-19
O04350	113	Tubulin-specific chaperon	yes	N/A	0.693	0.681	0.467	1e-11

>sp|Q6PEC1|TBCA_RAT Tubulin-specific chaperone A OS=Rattus norvegicus GN=Tbca PE=1 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 78/102 (76%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK K+E  + + +KKQ E++QES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
           +MMIP+CQRR+  AY +L+ IL+SE+DL++ E+Y  A  +LD
Sbjct: 61  RMMIPDCQRRLEAAYTDLRQILESEKDLEEAEEYKEARIVLD 102

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.
Rattus norvegicus (taxid: 10116)

>sp|P48428|TBCA_MOUSE Tubulin-specific chaperone A OS=Mus musculus GN=Tbca PE=2 SV=3

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 78/102 (76%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPR++ +KIKTGV++R+ KE+  Y KE   ++E+ EK K+E  + + +KKQ E++QES
Sbjct: 1   MADPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
           +MMIP+CQRR+  AY +L+ IL+SE+DL++ E+Y  A  +LD
Sbjct: 61  RMMIPDCQRRLEAAYTDLQQILESEKDLEEAEEYKEARVVLD 102

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Mus musculus (taxid: 10090)

>sp|O75347|TBCA_HUMAN Tubulin-specific chaperone A OS=Homo sapiens GN=TBCA PE=1 SV=3

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 78/102 (76%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK ++E  + + +KKQ E++QES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
           +MMIP+CQRR+  AY +L+ IL++E+DL++ E+Y  A  +LD
Sbjct: 61  RMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLD 102

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Homo sapiens (taxid: 9606)

>sp|P48427|TBCA_BOVIN Tubulin-specific chaperone A OS=Bos taurus GN=TBCA PE=1 SV=3

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 77/102 (75%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK K+E  + + +KKQ E++QES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
           +MMIP+CQRR+  A+ +L  +L+SE+DL++ E+Y  A  +LD
Sbjct: 61  RMMIPDCQRRLEAAHTDLLQLLESEKDLEEAEEYKEARLVLD 102

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Bos taurus (taxid: 9913)

>sp|P80584|TBCA_RABIT Tubulin-specific chaperone A OS=Oryctolagus cuniculus GN=TBCA PE=1 SV=2

 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 77/102 (75%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK ++E  + + +KKQ E++QES
Sbjct: 1   MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYAIKKQAEILQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
           +MMIP+CQRR+  A  +L+ IL+SE+DL++ E+Y  A  +LD
Sbjct: 61  RMMIPDCQRRLEAACTDLQQILESEKDLEEAEEYKEARLVLD 102

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Oryctolagus cuniculus (taxid: 9986)

>sp|P80585|TBCA_CHICK Tubulin-specific chaperone A OS=Gallus gallus GN=TBCA PE=1 SV=2

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 62/78 (79%)

Query: 1  MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
          MADPR++ +KIKTGV+KR+AKEK  Y KE   ++E+ EK K+E  D++ +KKQ E++QES
Sbjct: 1  MADPRLRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQES 60

Query: 61 QMMIPECQRRMVRAYEEL 78
          +MMIP+CQRR+  A+ +L
Sbjct: 61 RMMIPDCQRRLEIAHADL 78

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Gallus gallus (taxid: 9031)

>sp|O04350|TBCA_ARATH Tubulin-specific chaperone A OS=Arabidopsis thaliana GN=At2g30410 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%)

Query: 6  IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIP 65
          I+ LKIKT   KRI KE  +Y KEV  E  +    K +G+D + LK+Q  V+ ES+MMIP
Sbjct: 4  IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIP 63

Query: 66 ECQRRMVRAYEELKSIL 82
          +C +R+  A  +LKS L
Sbjct: 64 DCHKRLESALADLKSTL 80

Tubulin-folding protein; involved in the early step of the tubulin folding pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
91091982	112	PREDICTED: similar to AGAP002130-PA [Tri	0.945	0.937	0.609	1e-28
357611766	111	hypothetical protein KGM_18185 [Danaus p	0.945	0.945	0.590	2e-28
350416812	118	PREDICTED: tubulin-specific chaperone A-	0.990	0.932	0.590	3e-28
383863546	118	PREDICTED: tubulin-specific chaperone A-	0.990	0.932	0.581	4e-28
389613055	112	cofactor A [Papilio xuthus]	0.972	0.964	0.564	5e-28
332022847	118	Tubulin-specific chaperone A [Acromyrmex	0.990	0.932	0.572	8e-28
307213547	118	Tubulin-specific chaperone A [Harpegnath	0.990	0.932	0.563	1e-27
260829667	113	hypothetical protein BRAFLDRAFT_264942 [	0.963	0.946	0.560	4e-27
157112417	110	cofactor A, putative [Aedes aegypti] gi|	0.945	0.954	0.533	2e-26
307179472	118	Tubulin-specific chaperone A [Camponotus	0.990	0.932	0.536	6e-26

>gi|91091982|ref|XP_969241.1| PREDICTED: similar to AGAP002130-PA [Tribolium castaneum] gi|270000771|gb|EEZ97218.1| hypothetical protein TcasGA2_TC011011 [Tribolium castaneum]

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 83/105 (79%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPRIKTLKIKTGV+KR+AKEK TY KE   ++ R EK K EG DE+ ++KQ EV+QES
Sbjct: 1   MADPRIKTLKIKTGVVKRLAKEKVTYEKEADQQRNRIEKLKREGKDEYDIRKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQ 105
            MM+P+CQRR+  A++EL  IL SEQDLK+ E+Y  AL +L++A+
Sbjct: 61  LMMVPDCQRRLALAFDELNKILASEQDLKELEEYQTALNVLEEAK 105

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611766|gb|EHJ67643.1| hypothetical protein KGM_18185 [Danaus plexippus]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 83/105 (79%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPRI+ +KIKTGV+KRIAKEK  Y KE   ++ R EK K+EG DE  ++KQ EV+QES
Sbjct: 1   MADPRIRQIKIKTGVVKRIAKEKVVYEKEAEQQKNRIEKLKAEGQDEHTIRKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQ 105
            MM+P+CQRR+ +A+ +LKS L++EQDLK++EDY  A Q+L DA+
Sbjct: 61  LMMVPDCQRRLAKAFADLKSTLETEQDLKESEDYAAAEQVLKDAE 105

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416812|ref|XP_003491115.1| PREDICTED: tubulin-specific chaperone A-like [Bombus impatiens]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 87/110 (79%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           M+DPRI+TLKIKTGV+KR+AKEK TY KE   ++ER +K K +  D + +KKQ EV+QES
Sbjct: 1   MSDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
            MMIP+CQRR+V+A+EELK ILD+EQDLK+ EDY  A ++L  A+ ++ K
Sbjct: 61  LMMIPDCQRRLVKAFEELKKILDTEQDLKEVEDYIEAEKVLQGAEAQLPK 110

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863546|ref|XP_003707241.1| PREDICTED: tubulin-specific chaperone A-like [Megachile rotundata]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 88/110 (80%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           M+DPRI+TLKIKTGV+KR+AKEK TY KE   ++ER +K K +  D + +KKQ EV+QES
Sbjct: 1   MSDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
            MM+P+CQRR+V+A+EELK ILD+EQDLK+ EDY  A ++L +A+ ++ K
Sbjct: 61  LMMVPDCQRRLVKAFEELKKILDTEQDLKEVEDYIEAEKVLREAEAQLPK 110

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389613055|dbj|BAM19910.1| cofactor A [Papilio xuthus]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 87/108 (80%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPRI+ +KIKTGV+KRIA+EK+ Y KE   ++++ +KFK EG DE  ++KQ EV+QES
Sbjct: 1   MADPRIRQIKIKTGVVKRIAREKSLYEKEAEEQKDKVQKFKDEGQDEHDIRKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEI 108
            MM+P+CQRR+++A+ +LKSIL+SEQDLK+ EDY  A Q+L +A+  +
Sbjct: 61  LMMVPDCQRRLLKAHADLKSILESEQDLKENEDYIAAEQVLKEAESHL 108

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022847|gb|EGI63120.1| Tubulin-specific chaperone A [Acromyrmex echinatior]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 89/110 (80%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           M+DPRI+TLKIKTGV+KR+AKEK TY KE   ++ER +K K +  D + +KKQ EV+QES
Sbjct: 1   MSDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
            MM+P+CQRR+V+A+EELK IL++EQDLK+ EDY  A ++L +A++++ K
Sbjct: 61  LMMVPDCQRRLVKAFEELKKILETEQDLKEVEDYIEAEKVLQEAEEQLPK 110

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213547|gb|EFN88956.1| Tubulin-specific chaperone A [Harpegnathos saltator]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 88/110 (80%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           M+DPR++TLKIKTGV+KR+AKEK TY KE   ++ER +K K +  D + ++KQ EV+QES
Sbjct: 1   MSDPRVRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKDQDKDGYDIRKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
            MM+P+CQRR+V+A+EELK ILD+EQDLK+ EDY  A ++L +A+ ++ K
Sbjct: 61  LMMVPDCQRRLVKAFEELKKILDTEQDLKELEDYIEAEKVLQEAEAQLPK 110

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260829667|ref|XP_002609783.1| hypothetical protein BRAFLDRAFT_264942 [Branchiostoma floridae] gi|229295145|gb|EEN65793.1| hypothetical protein BRAFLDRAFT_264942 [Branchiostoma floridae]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 86/107 (80%)

Query: 2   ADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQ 61
           +DPR++ +KIKTGV+KRI KEKT Y KEV  E+ER EKFK EG D+  ++KQ EV+QES+
Sbjct: 4   SDPRLRQIKIKTGVVKRIGKEKTMYGKEVLKEEERLEKFKLEGKDDHDIRKQEEVLQESK 63

Query: 62  MMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEI 108
           MMIP+C+RR++ A+EEL  +L++E DL +TE++  A ++LDDA K++
Sbjct: 64  MMIPDCRRRLMTAHEELTKMLEAEADLNETEEFKAAQEVLDDASKQL 110

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157112417|ref|XP_001657525.1| cofactor A, putative [Aedes aegypti] gi|108878086|gb|EAT42311.1| AAEL006133-PA [Aedes aegypti]

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 85/105 (80%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           M+DPR++ L IKTGV+KR++KEKT Y KEV  ++ R EK K+EG+D+  L+KQ EV+QES
Sbjct: 1   MSDPRLRQLTIKTGVVKRLSKEKTVYEKEVVTQRNRIEKLKTEGADDHVLRKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQ 105
            MM+P+CQRR+ +A+EEL  ++ +E++LK+++ YT A+ IL+DA+
Sbjct: 61  MMMVPDCQRRLAKAFEELSEMIKNEEELKESDQYTAAVAILEDAK 105

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179472|gb|EFN67796.1| Tubulin-specific chaperone A [Camponotus floridanus]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 87/110 (79%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           M+DPRI+TLKI+TGV+KR+A+EK  Y KE   ++ER +K K +  D + ++KQ EV+QES
Sbjct: 1   MSDPRIRTLKIQTGVVKRLAREKIMYEKEATQQRERIQKLKEQDKDGYDIRKQEEVLQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIEK 110
            MM+P+CQRR+V+A+E+LKS LD+EQDLK+ EDY  A ++L +A+ ++ K
Sbjct: 61  LMMVPDCQRRLVKAFEQLKSFLDTEQDLKEIEDYIEAGKVLQEAEAQLPK 110

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
ZFIN|ZDB-GENE-040426-962	108	tbca "tubulin cofactor a" [Dan	0.963	0.990	0.495	2.5e-26
RGD|1311538	108	Tbca "tubulin folding cofactor	0.963	0.990	0.504	3.2e-26
UNIPROTKB|Q6PEC1	108	Tbca "Tubulin-specific chapero	0.963	0.990	0.504	3.2e-26
MGI|MGI:107549	108	Tbca "tubulin cofactor A" [Mus	0.963	0.990	0.485	1.4e-25
UNIPROTKB|F1NVH2	108	TBCA "Tubulin-specific chapero	0.963	0.990	0.485	2.9e-25
UNIPROTKB|O75347	108	TBCA "Tubulin-specific chapero	0.963	0.990	0.485	2.9e-25
UNIPROTKB|P80585	108	TBCA "Tubulin-specific chapero	0.963	0.990	0.485	4.6e-25
UNIPROTKB|P48427	108	TBCA "Tubulin-specific chapero	0.963	0.990	0.485	4.6e-25
FB|FBgn0039869	110	CG1890 [Drosophila melanogaste	0.981	0.990	0.495	3.8e-23
RGD|2320668	222	LOC100361193 "tubulin cofactor	0.909	0.454	0.475	2.6e-22

ZFIN|ZDB-GENE-040426-962 tbca "tubulin cofactor a" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/107 (49%), Positives = 82/107 (76%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPRI+ +KIKTGV+KR+AKE+  YIKE   ++E+ E+ K+E  DE+ +KKQ+EV+QES
Sbjct:     1 MADPRIRQIKIKTGVVKRLAKEEVLYIKEAKQQEEKIERLKAEAGDEYLIKKQMEVLQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+C RR+  A+ +L+ +L++E++L + E+Y  A  +LD  + E
Sbjct:    61 RMMIPDCHRRLAMAHADLQQLLETEEELAEAEEYKEARTVLDSVKLE 107

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

RGD|1311538 Tbca "tubulin folding cofactor A" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 54/107 (50%), Positives = 80/107 (74%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK K+E  + + +KKQ E++QES
Sbjct:     1 MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+CQRR+  AY +L+ IL+SE+DL++ E+Y  A  +LD  + E
Sbjct:    61 RMMIPDCQRRLEAAYTDLRQILESEKDLEEAEEYKEARIVLDSVKLE 107

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q6PEC1 Tbca "Tubulin-specific chaperone A" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 54/107 (50%), Positives = 80/107 (74%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK K+E  + + +KKQ E++QES
Sbjct:     1 MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+CQRR+  AY +L+ IL+SE+DL++ E+Y  A  +LD  + E
Sbjct:    61 RMMIPDCQRRLEAAYTDLRQILESEKDLEEAEEYKEARIVLDSVKLE 107

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

MGI|MGI:107549 Tbca "tubulin cofactor A" [Mus musculus (taxid:10090)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 52/107 (48%), Positives = 80/107 (74%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPR++ +KIKTGV++R+ KE+  Y KE   ++E+ EK K+E  + + +KKQ E++QES
Sbjct:     1 MADPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+CQRR+  AY +L+ IL+SE+DL++ E+Y  A  +LD  + E
Sbjct:    61 RMMIPDCQRRLEAAYTDLQQILESEKDLEEAEEYKEARVVLDSVKLE 107

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1NVH2 TBCA "Tubulin-specific chaperone A" [Gallus gallus (taxid:9031)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 52/107 (48%), Positives = 82/107 (76%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPR++ +KIKTGV+KR+AKEK  Y KE   ++E+ EK K+E  D++ +KKQ+E++QES
Sbjct:     1 MADPRLRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQVEILQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+CQRR+  A+ +L  +L++E++L++ E+Y  A  IL+  + E
Sbjct:    61 RMMIPDCQRRLEIAHADLTQLLENEKELEEAEEYKEARSILESVKLE 107

GO:0005874 "microtubule" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|O75347 TBCA "Tubulin-specific chaperone A" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 52/107 (48%), Positives = 80/107 (74%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK ++E  + + +KKQ E++QES
Sbjct:     1 MADPRVRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+CQRR+  AY +L+ IL++E+DL++ E+Y  A  +LD  + E
Sbjct:    61 RMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVKLE 107

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0051087 "chaperone binding" evidence=TAS

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|P80585 TBCA "Tubulin-specific chaperone A" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 52/107 (48%), Positives = 81/107 (75%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPR++ +KIKTGV+KR+AKEK  Y KE   ++E+ EK K+E  D++ +KKQ E++QES
Sbjct:     1 MADPRLRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+CQRR+  A+ +L  +L++E++L++ E+Y  A  IL+  + E
Sbjct:    61 RMMIPDCQRRLEIAHADLTQLLENEKELEEAEEYKEARSILESVKLE 107

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|P48427 TBCA "Tubulin-specific chaperone A" [Bos taurus (taxid:9913)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 52/107 (48%), Positives = 79/107 (73%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             MADPR++ +KIKTGV+KR+ KEK  Y KE   ++E+ EK K+E  + + +KKQ E++QES
Sbjct:     1 MADPRVRQIKIKTGVVKRLVKEKMMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQES 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             +MMIP+CQRR+  A+ +L  +L+SE+DL++ E+Y  A  +LD  + E
Sbjct:    61 RMMIPDCQRRLEAAHTDLLQLLESEKDLEEAEEYKEARLVLDSVKLE 107

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005730 "nucleolus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

FB|FBgn0039869 CG1890 [Drosophila melanogaster (taxid:7227)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 54/109 (49%), Positives = 76/109 (69%)

Query:     1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
             M DPRI+ L IK+GV++R+ +EK  Y KEV  EQ R EK + +G+D+  L+KQ EVIQE 
Sbjct:     1 MTDPRIRQLVIKSGVVRRLTREKYCYAKEVLTEQARLEKLRGDGADDHVLRKQEEVIQEC 60

Query:    61 QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKEIE 109
              MM+P+ +RR+ + YE L+  L  EQDL +T+ Y  A +IL DA+ E+E
Sbjct:    61 IMMVPDSKRRLQKEYEVLEKYLADEQDLIETDSYKKAAEILKDAKAELE 109

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

RGD|2320668 LOC100361193 "tubulin cofactor A" [Rattus norvegicus (taxid:10116)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 48/101 (47%), Positives = 74/101 (73%)

Query:     7 KTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPE 66
             + +KIKTGV+KR+ KEK  Y KE   ++E+ EK K+E  + + +KKQ E++QES+MMIP+
Sbjct:    38 RQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIPD 97

Query:    67 CQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
             CQ R+  A+ +L+ IL+SE+DL++ E+Y  AL +LD  + E
Sbjct:    98 CQLRLEAAHTDLQQILESEKDLEEAEEYKEALIVLDSVKLE 138

GO:0005730 "nucleolus" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48428	TBCA_MOUSE	No assigned EC number	0.5	0.9189	0.9444	yes	N/A
O75347	TBCA_HUMAN	No assigned EC number	0.5	0.9189	0.9444	yes	N/A
O04350	TBCA_ARATH	No assigned EC number	0.4675	0.6936	0.6814	yes	N/A
P80585	TBCA_CHICK	No assigned EC number	0.5512	0.7027	0.7222	yes	N/A
P80584	TBCA_RABIT	No assigned EC number	0.5	0.9189	0.9444	yes	N/A
Q6PEC1	TBCA_RAT	No assigned EC number	0.5196	0.9189	0.9444	yes	N/A
P48427	TBCA_BOVIN	No assigned EC number	0.5	0.9189	0.9444	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam02970	91	pfam02970, TBCA, Tubulin binding cofactor A	6e-21

>gnl|CDD|217305 pfam02970, TBCA, Tubulin binding cofactor A

 Score = 79.6 bits (197), Expect = 6e-21
 Identities = 43/91 (47%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 8  TLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPEC 67
           LKIKTGV+KR+ KE+ +Y KEV  ++ER EK K+EG+DE+ LKKQ EV++E++MM+P+C
Sbjct: 1  QLKIKTGVVKRLIKEEASYEKEVEQQEERVEKLKAEGADEYDLKKQEEVLKETEMMLPDC 60

Query: 68 QRRMVRAYEELKSILDSEQ-DLKDTEDYTIA 97
          +RR+ +A  +L+  L+  +  L++ E+   A
Sbjct: 61 KRRLQKAVADLEEYLEEYEEGLEELEEAKEA 91

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG3470|consensus	107		100.0
PF02970	90	TBCA: Tubulin binding cofactor A; InterPro: IPR004	100.0
PRK13411	653	molecular chaperone DnaK; Provisional	80.16

>KOG3470|consensus

Probab=100.00  E-value=1.3e-38  Score=219.16  Aligned_cols=106  Identities=48%  Similarity=0.731  Sum_probs=103.7

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy13695          1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKS   80 (111)
Q Consensus         1 M~dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~   80 (111)
                      |+|| +|||+||||+|+||+||+.+|++|+.++++|+++|+++|.|+|+||+|++||+||.||||||++||++|++||++
T Consensus         1 Ma~~-vrqL~IKt~vvkRlvKE~~~Yekev~~eeakvakl~~dg~d~ydlkkQeeVl~et~~mlPD~~~RL~~a~~DLe~   79 (107)
T KOG3470|consen    1 MATP-VRQLVIKTGVVKRLVKEVEYYEKEVKEEEAKVAKLKDDGADPYDLKKQEEVLKETRMMLPDSQRRLRKAYEDLES   79 (107)
T ss_pred             CCcc-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCChHHHHHHHHHHHHHHHH
Q psy13695         81 ILDSEQDLKDTEDYTIALQILDDAQKE  107 (111)
Q Consensus        81 ~l~~~~~~~~~ee~~~Ake~L~~a~~~  107 (111)
                      ++.+++++.++++|..|..+|..++..
T Consensus        80 ~l~~~~~~ee~~e~~~A~~~l~~~k~~  106 (107)
T KOG3470|consen   80 ILADEQYLEETPELKSANTYLDSAKAE  106 (107)
T ss_pred             HHhcccchhccHHHHHHHHHHHHHHhc
Confidence            999999999999999999999998764

>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT

Probab=100.00  E-value=3.5e-34  Score=193.26  Aligned_cols=90  Identities=49%  Similarity=0.800  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccC
Q psy13695          8 TLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQD   87 (111)
Q Consensus         8 qLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~   87 (111)
                      ||+||||+|+||+||+.||++|+.++.+||++|+++|+|+|+||+|.+||+||++|||||.+||.+|+.+|+.||++..+
T Consensus         1 QLkIkt~~vkRL~KE~~~Y~kE~~~q~~rle~~k~~~~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~   80 (90)
T PF02970_consen    1 QLKIKTGVVKRLLKEEASYEKEVEEQEARLEKMKAEGEDEYDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEEG   80 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCcC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999998666


Q ss_pred             CCChHHHHHH
Q psy13695         88 LKDTEDYTIA   97 (111)
Q Consensus        88 ~~~~ee~~~A   97 (111)
                      ..+++++.+|
T Consensus        81 ~ee~~~akeA   90 (90)
T PF02970_consen   81 LEELEEAKEA   90 (90)
T ss_dssp             CCCSHHHHHH
T ss_pred             chhHHHHhhC
Confidence            6666666554

Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.

>PRK13411 molecular chaperone DnaK; Provisional

Probab=80.16  E-value=38  Score=29.80  Aligned_cols=86  Identities=17%  Similarity=0.248  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHH
Q psy13695         15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDY   94 (111)
Q Consensus        15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~   94 (111)
                      .+.|+.++...|..+-.....+.+....-..-.|.++...+  +....+-|+-+.++...+.+++++|.. + ..+.+++
T Consensus       506 ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~~~~~er~~i~~~l~~~~~wL~~-~-~~~~~~~  581 (653)
T PRK13411        506 EIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGELISEELKQRAEQKVEQLEAALTD-P-NISLEEL  581 (653)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHHHHHHhc-C-CCCHHHH
Confidence            46777777777765555554444433322233344444432  246677888899999999999999987 2 2366778


Q ss_pred             HHHHHHHHHH
Q psy13695         95 TIALQILDDA  104 (111)
Q Consensus        95 ~~Ake~L~~a  104 (111)
                      .+..+.|...
T Consensus       582 ~~~~~el~~~  591 (653)
T PRK13411        582 KQQLEEFQQA  591 (653)
T ss_pred             HHHHHHHHHH
Confidence            7777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
1h7c_A	108	Human Tubulin Chaperone Cofactor A Length = 108		3e-21
3mxz_A	116	Crystal Structure Of Tubulin Folding Cofactor A Fro		8e-13
1qsd_A	106	Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofacto		8e-04

>pdb|1H7C|A Chain A, Human Tubulin Chaperone Cofactor A Length = 108

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 75/101 (74%)
Query: 2   ADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQ 61
           ADPR++ +KIKTGV++R+ KE+  Y KE   ++E+ EK ++E  + + +KKQ E++QES+
Sbjct: 2   ADPRVRQIKIKTGVVRRLVKERVXYEKEAKQQEEKIEKXRAEDGENYDIKKQAEILQESR 61
Query: 62  MMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILD 102
             IP+CQRR+  AY +L+ IL++E+DL++ E+Y  A  +LD
Sbjct: 62  XXIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLD 102

>pdb|3MXZ|A Chain A, Crystal Structure Of Tubulin Folding Cofactor A From Arabidopsis Thaliana Length = 116

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 6  IKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIP 65
          I+ LKIKT   KRI KE  +Y KEV  E  +    K +G+D + LK+Q  V+ ES+MMIP
Sbjct: 7  IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIP 66
Query: 66 ECQRRMVRAYEELKSIL 82
          +C +R+  A  +LKS L
Sbjct: 67 DCHKRLESALADLKSTL 83

>pdb|1QSD|A Chain A, Rbl2p, Beta-Tubulin Binding Post-Chaperonin Cofactor Length = 106

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 9   LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGS-DEFKLKKQLEVIQESQMMIPEC 67
           L IK   LKR+ KE+  Y +E+  ++    K K + S D + LKKQ EV+ +++ ++P  
Sbjct: 6   LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 65
Query: 68  QRRMVRAYEELKSILDSEQDLKDTEDY----TIALQILD 102
             ++    E+L+  L + Q  +D  D     T A ++LD
Sbjct: 66  YEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLD 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
1h7c_A	108	Tubulin-specific chaperone A; protein folding, cof	7e-29
1qsd_A	106	Protein (beta-tubulin binding post-chaperonin cofa	4e-21
3mxz_A	116	Tubulin-specific chaperone A; helix bundle; 1.60A	4e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1 Length = 108

 Score = 99.5 bits (248), Expect = 7e-29
 Identities = 50/107 (46%), Positives = 80/107 (74%)

Query: 1   MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQES 60
           MADPR++ +KIKTGV++R+ KE+  Y KE   ++E+ EK ++E  + + +KKQ E++QES
Sbjct: 1   MADPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQES 60

Query: 61  QMMIPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQKE 107
           +MMIP+CQRR+  AY +L+ IL++E+DL++ E+Y  A  +LD  + E
Sbjct: 61  RMMIPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVKLE 107

>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1 Length = 106

 Score = 79.8 bits (197), Expect = 4e-21
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 9   LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPEC 67
           L IK   LKR+ KE+  Y +E+  ++    K K +   D + LKKQ EV+ +++ ++P  
Sbjct: 6   LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 65

Query: 68  QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQK 106
             ++    E+L+  L + Q  +D  D   A+    +   
Sbjct: 66  YEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQELLD 104

>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana} Length = 116

 Score = 77.7 bits (191), Expect = 4e-20
 Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)

Query: 5   RIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMI 64
            I+ LKIKT   KRI KE  +Y KEV  E  +    K +G+D + LK+Q  V+ ES+MMI
Sbjct: 6   TIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMI 65

Query: 65  PECQRRMVRAYEELKSILDS--EQDLKDTEDYTIALQILDDAQKEIEK 110
           P+C +R+  A  +LKS L    E D K+  +   A + + D +K+   
Sbjct: 66  PDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFPT 113

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 28/133 (21%)

Query: 4   PRIKT-LKIKTGVLKRIAKE------------KTTYIKEV----GIEQER-----YEKFK 41
            R++  LK++   L  +               KT    +V     ++ +      +   K
Sbjct: 132 SRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 42  SEGSDEFKLKKQLEVIQESQMMIPECQR--RMVRAYEELKSILDSEQDLKDTEDYTIALQ 99
           +  S E  L+   +++   Q+      R          + SI    + L  ++ Y   L 
Sbjct: 191 NCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 100 ILDDAQ-KEIEKA 111
           +L + Q  +   A
Sbjct: 249 VLLNVQNAKAWNA 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
1h7c_A	108	Tubulin-specific chaperone A; protein folding, cof	100.0
3mxz_A	116	Tubulin-specific chaperone A; helix bundle; 1.60A	100.0
1qsd_A	106	Protein (beta-tubulin binding post-chaperonin cofa	100.0
4e81_A	219	Chaperone protein DNAK; chaperone; 1.90A {Escheric	90.18
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	82.71

>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1

Probab=100.00  E-value=3.7e-42  Score=238.13  Aligned_cols=107  Identities=47%  Similarity=0.833  Sum_probs=101.2

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy13695          1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKS   80 (111)
Q Consensus         1 M~dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~   80 (111)
                      |+||++|||+||||+|+||+||+.||++|+.++++||++|+++|+|+|+||+|.+||+||++|||||++||.+|+.+|+.
T Consensus         1 M~d~~l~qLkIkt~~vkRL~KE~~~Y~kE~~~q~~riek~k~e~~Dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~   80 (108)
T 1h7c_A            1 MADPRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQR   80 (108)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCChHHHHHHHHHHHHHHHH
Q psy13695         81 ILDSEQDLKDTEDYTIALQILDDAQKE  107 (111)
Q Consensus        81 ~l~~~~~~~~~ee~~~Ake~L~~a~~~  107 (111)
                      ||.++++++++++|.+|+++|+.|+..
T Consensus        81 ~l~~e~~~~~~ee~~~Ake~l~~a~~~  107 (108)
T 1h7c_A           81 ILENEKDLEEAEEYKEARLVLDSVKLE  107 (108)
T ss_dssp             HHHHCGGGTTSHHHHHHHHHHHHHHC-
T ss_pred             HHHhcccCCCcHHHHHHHHHHHHHHhc
Confidence            999888899999999999999999864

>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=7.1e-39  Score=224.18  Aligned_cols=108  Identities=39%  Similarity=0.571  Sum_probs=100.2

Q ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy13695          3 DPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSIL   82 (111)
Q Consensus         3 dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l   82 (111)
                      +|++|||+||||+|+||+||+.||++|+.+|.+|+++|+++|+|+|+||+|.+||+||++|||||++||.+|+.+|+.||
T Consensus         4 ~~~lrqLkIktg~vkRL~KE~~~Y~kE~~~q~~kiekmk~e~~dey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l   83 (116)
T 3mxz_A            4 MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTL   83 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hh--ccCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695         83 DS--EQDLKDTEDYTIALQILDDAQKEIEK  110 (111)
Q Consensus        83 ~~--~~~~~~~ee~~~Ake~L~~a~~~l~~  110 (111)
                      .+  +.++.++++|.+|+++|++|+..+++
T Consensus        84 ~~~~~~~~~~~ee~~~Ak~~l~~ae~~~~~  113 (116)
T 3mxz_A           84 AELEETDEKEGPEIEDAKKTVADVEKQFPT  113 (116)
T ss_dssp             HHHHTC-CCCCHHHHHHHHHHHHHHTC---
T ss_pred             HHhcccCCCChHHHHHHHHHHHHHHHhccC
Confidence            85  56789999999999999999887653

>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1

Probab=100.00  E-value=1.1e-38  Score=220.09  Aligned_cols=103  Identities=32%  Similarity=0.490  Sum_probs=96.9

Q ss_pred             CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-chHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy13695          1 MADPRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGS-DEFKLKKQLEVIQESQMMIPECQRRMVRAYEELK   79 (111)
Q Consensus         1 M~dp~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~-de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~   79 (111)
                      || |  |||+||||+|+||+||+.||++|+.++++||++|+++|+ |+|+||+|.+||+||++|||||.+||.+|+.+|+
T Consensus         1 ma-~--rqLkIktg~vkRL~KE~~~Y~kE~~~q~~riek~k~~~~~dey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~   77 (106)
T 1qsd_A            1 MA-P--TQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLE   77 (106)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-c--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            77 7  999999999999999999999999999999999999987 9999999999999999999999999999999999


Q ss_pred             HHHhhccCCCChHHHHHHHHHHHHHHHHhh
Q psy13695         80 SILDSEQDLKDTEDYTIALQILDDAQKEIE  109 (111)
Q Consensus        80 ~~l~~~~~~~~~ee~~~Ake~L~~a~~~l~  109 (111)
                      .||.   +++++++|.+|+++|+.|+.++.
T Consensus        78 ~~l~---~~~~~ee~~~Ake~l~~a~~~~~  104 (106)
T 1qsd_A           78 QFLK---TYQGTEDVSDARSAITSAQELLD  104 (106)
T ss_dssp             HHHH---TCCSSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHH---hccCcHHHHHHHHHHHHHHHhhc
Confidence            9994   57889999999999999998875

>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A

Probab=90.18  E-value=3.9  Score=30.03  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695         15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQ-MMIPECQRRMVRAYEELKSILDSEQDLKDTED   93 (111)
Q Consensus        15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~-~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee   93 (111)
                      -+.|++++...|..|=.....+++....-..-.|.++   ..|.+.. .+-++-+.+|..++.+++++|..+    +.++
T Consensus       123 eI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~---~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~----~~~~  195 (219)
T 4e81_A          123 EIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTR---KQVEEAGDKLPADDKTAIESALTALETALKGE----DKAA  195 (219)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHH
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHH
Confidence            3678888888887666666666555433223334444   3444444 344778889999999999999873    5678


Q ss_pred             HHHHHHHHHHH
Q psy13695         94 YTIALQILDDA  104 (111)
Q Consensus        94 ~~~Ake~L~~a  104 (111)
                      |..+.+-|+.+
T Consensus       196 i~~~~~~L~~~  206 (219)
T 4e81_A          196 IEAKMQELAQV  206 (219)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888777654

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=82.71  E-value=14  Score=30.54  Aligned_cols=83  Identities=11%  Similarity=0.135  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695         15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQ-MMIPECQRRMVRAYEELKSILDSEQDLKDTED   93 (111)
Q Consensus        15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~-~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee   93 (111)
                      -+.|++++...|..|=....++++....-..-.|.++   ..|++-. .+-++-+.++..++.+++++|..+    +.++
T Consensus       511 ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~  583 (605)
T 4b9q_A          511 EIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTR---KQVEEAGDKLPADDKTAIESALTALETALKGE----DKAA  583 (605)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHGGGSCHHHHHHHHHHHHHHHHHHHSS----CHHH
T ss_pred             HHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHH
Confidence            4688888888887776666666555433223334444   4444433 344788889999999999999863    4678


Q ss_pred             HHHHHHHHHHH
Q psy13695         94 YTIALQILDDA  104 (111)
Q Consensus        94 ~~~Ake~L~~a  104 (111)
                      +..+.+-|+.+
T Consensus       584 ~~~~~~~l~~~  594 (605)
T 4b9q_A          584 IEAKMQELAQV  594 (605)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1h7ca_	103	a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (	6e-27
d1qsda_	102	a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's	1e-19

>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (233), Expect = 6e-27
 Identities = 46/102 (45%), Positives = 76/102 (74%)

Query: 4   PRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMM 63
           PR++ +KIKTGV++R+ KE+  Y KE   ++E+ EK ++E  + + +KKQ E++QES+MM
Sbjct: 1   PRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMM 60

Query: 64  IPECQRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDAQ 105
           IP+CQRR+  AY +L+ IL++E+DL++ E+Y  A  +LD  +
Sbjct: 61  IPDCQRRLEAAYLDLQRILENEKDLEEAEEYKEARLVLDSVK 102

>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]} Length = 102

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]

 Score = 74.7 bits (184), Expect = 1e-19
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 9   LKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPEC 67
           L IK   LKR+ KE+  Y +E+  ++    K K +   D + LKKQ EV+ +++ ++P  
Sbjct: 3   LDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTL 62

Query: 68  QRRMVRAYEELKSILDSEQDLKDTEDYTIALQILDDA 104
             ++    E+L+  L + Q  +D  D   A+    + 
Sbjct: 63  YEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQEL 99

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1h7ca_	103	Tubulin chaperone cofactor A {Human (Homo sapiens)	100.0
d1qsda_	102	Tubulin chaperone cofactor A {Baker's yeast (Sacch	100.0
d1dkza1	97	DnaK {Escherichia coli [TaxId: 562]}	91.16
d1u00a1	112	Chaperone protein hscA (Hsc66) {Escherichia coli [	82.05

>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-41  Score=231.44  Aligned_cols=102  Identities=45%  Similarity=0.832  Sum_probs=100.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Q psy13695          4 PRIKTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILD   83 (111)
Q Consensus         4 p~~rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~   83 (111)
                      |++|||+||||+|+||+||+.+|++|+.++.+|+++|+++|+|+|+||+|.+||+||++|||||.+||.+|+.+|+.||+
T Consensus         1 prlrqLkIktgvvkRL~KE~~~Y~kE~~~q~~k~ek~k~~~~dey~iKkq~~vl~Es~~mipd~~~Rl~~a~~~L~~~l~   80 (103)
T d1h7ca_           1 PRVRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE   80 (103)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCChHHHHHHHHHHHHHH
Q psy13695         84 SEQDLKDTEDYTIALQILDDAQ  105 (111)
Q Consensus        84 ~~~~~~~~ee~~~Ake~L~~a~  105 (111)
                      +++++.++++|.+|+++|++|+
T Consensus        81 ~e~~~~~~ee~~~A~~~l~~ak  102 (103)
T d1h7ca_          81 NEKDLEEAEEYKEARLVLDSVK  102 (103)
T ss_dssp             HCGGGTTSHHHHHHHHHHHHHH
T ss_pred             HCCCcCchHHHHHHHHHHHhhc
Confidence            9899999999999999999986

>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Tubulin chaperone cofactor A
family: Tubulin chaperone cofactor A
domain: Tubulin chaperone cofactor A
species: Baker's yeast (Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]

Probab=100.00  E-value=8.1e-38  Score=212.96  Aligned_cols=101  Identities=29%  Similarity=0.452  Sum_probs=95.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Q psy13695          7 KTLKIKTGVLKRIAKEKTTYIKEVGIEQERYEKFKSE-GSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSE   85 (111)
Q Consensus         7 rqLkIktg~vkRL~KE~~~Y~kE~~~q~~klek~k~~-g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~   85 (111)
                      .||+||||||+||+||+.+|++|+.++++|+++|+++ |+|+|+||+|.+||+||+||||||++||..|+.+|+.||++ 
T Consensus         1 ~QLkIktg~vkRL~KE~~~Y~kE~~~q~~kv~k~kad~~~dey~iKkq~evL~Es~~mipd~~~RL~~a~~~L~~~l~~-   79 (102)
T d1qsda_           1 TQLDIKVKALKRLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKT-   79 (102)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             CceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-
Confidence            4899999999999999999999999999999999986 89999999999999999999999999999999999999987 


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHhhh
Q psy13695         86 QDLKDTEDYTIALQILDDAQKEIEK  110 (111)
Q Consensus        86 ~~~~~~ee~~~Ake~L~~a~~~l~~  110 (111)
                        ..+++++.+|+++|+.|+..|+.
T Consensus        80 --~~~~ee~~~akeal~~ak~~l~s  102 (102)
T d1qsda_          80 --YQGTEDVSDARSAITSAQELLDS  102 (102)
T ss_dssp             --CCSSSCCHHHHHHHHHHHHHHHC
T ss_pred             --cCCchHHHHHHHHHHHHHHHhhC
Confidence              45678899999999999998863

>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: immunoglobulin/albumin-binding domain-like
superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain
family: Heat shock protein 70kD (HSP70), C-terminal subdomain
domain: DnaK
species: Escherichia coli [TaxId: 562]

Probab=91.16  E-value=0.94  Score=27.62  Aligned_cols=87  Identities=11%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCCChHHH
Q psy13695         15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQMMIPECQRRMVRAYEELKSILDSEQDLKDTEDY   94 (111)
Q Consensus        15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee~   94 (111)
                      =|.|+++|=.-|..+=...+.+++..-.-..-.|.++++..-.  ...+=++-..+|..++..|+.++..    .+.+.+
T Consensus         5 EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~e~--~~~l~~~~k~~i~~~i~~l~~~l~~----~d~~~i   78 (97)
T d1dkza1           5 EIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEA--GDKLPADDKTAIESALTALETALKG----EDKAAI   78 (97)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGSCHHHHHHHHHHHHHHHHHHTS----SCHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCCHHHHHHHHHHHHHHHHHHhc----CCHHHH
Confidence            3789999999999888888888887665445667776666432  2346677888999999999999975    345677


Q ss_pred             HHHHHHHHHHHHH
Q psy13695         95 TIALQILDDAQKE  107 (111)
Q Consensus        95 ~~Ake~L~~a~~~  107 (111)
                      ..+...|..+...
T Consensus        79 ~~~~~~L~~~~~~   91 (97)
T d1dkza1          79 EAKMQELAQVSQK   91 (97)
T ss_dssp             HHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7787777765443

>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: immunoglobulin/albumin-binding domain-like
superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain
family: Heat shock protein 70kD (HSP70), C-terminal subdomain
domain: Chaperone protein hscA (Hsc66)
species: Escherichia coli [TaxId: 562]

Probab=82.05  E-value=4  Score=25.22  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHhhccCCCChHH
Q psy13695         15 VLKRIAKEKTTYIKEVGIEQERYEKFKSEGSDEFKLKKQLEVIQESQM-MIPECQRRMVRAYEELKSILDSEQDLKDTED   93 (111)
Q Consensus        15 ~vkRL~KE~~~Y~kE~~~q~~klek~k~~g~de~~iKkq~~vl~Et~~-mipd~~~RL~~a~~~L~~~l~~~~~~~~~ee   93 (111)
                      =|.|+++|=..|..|=......++....-..-.|.+.++..   +-.. +=++-...+..++.+|+.+|..    .+...
T Consensus         5 EIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~---e~~~~L~~~e~~~i~~~i~~l~~~l~~----~d~~~   77 (112)
T d1u00a1           5 EIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA---ADAALLSAAERQVIDDAAAHLSEVAQG----DDVDA   77 (112)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHGGGSCHHHHHHHHHHHHHHHHHTTS----SCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHhhCCHHHHHHHHHHHHHHHHHHHC----CCHHH
Confidence            37889999888888877777777766554455555555554   4333 4566677899999999999976    34677


Q ss_pred             HHHHHHHHHHHH
Q psy13695         94 YTIALQILDDAQ  105 (111)
Q Consensus        94 ~~~Ake~L~~a~  105 (111)
                      +..+.+.|..+.
T Consensus        78 I~~~~~~L~~~~   89 (112)
T d1u00a1          78 IEQAIKNVDKQT   89 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777776554