Psyllid ID: psy13740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-----
Protein Sequence
MNHFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE
Secondary Structure (PSIPRED)
ccEEEEEEEEEccccccccccccEEEEEEEcccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEEccccccHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccccccEEEEEEEcccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHEccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEcccHcHcHHHHHHHHHHHHHccccHcccccccHEEEccccccccccccccHHHHHHccc
Coil and Loop (DISEMBL)
MNHFLISFsyqdvrapnrshfhSFVYFYfsqkdtpqgtlmtdlpvaIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFnrrfepmwtcivgtnfgayvSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYLKSSAeakakgprkrklrpdckfalaggpkkekdekkedeeEEEEEKE
Flexible Loop (DISEMBL)
MNHFLISFSyqdvrapnrSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYLKSSAeakakgprkrklrpdckfalaggpkkekdekkedeeeeeeeke
Low Complexity Region (SEG)
MNHFLISFSYQDVRAPNRshfhsfvyfyfsQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPkkekdekkedeeeeeeeke
Disordered region (IsUnstruct)
***FLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYL***********************************************
Disordered Region (DISOPRED)
*NHFLISFSY*D********F**FVYF*****************VAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQM*********************CK**************************
Disordered Region (DISEMBL)
MNHFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYLKSS*************RPDCKFALAGG********************
Disordered Region (DISPRO)
MNHFLISFSYQDVRAPNRSHFHSFVYFYFSQKDT***TLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYLKSSAEAKAKGPRKRKLRPDCKFALAG*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	185	2.2.26 [Sep-21-2011]
Q24117	89	Dynein light chain 1, cyt	yes	N/A	0.481	1.0	0.483	1e-21
Q9UR05	85	Dynein light chain 1, cyt	yes	N/A	0.448	0.976	0.542	3e-21
O96860	89	Dynein light chain 2, cyt	yes	N/A	0.481	1.0	0.471	3e-21
Q22799	89	Dynein light chain 1, cyt	yes	N/A	0.481	1.0	0.483	4e-21
Q78P75	89	Dynein light chain 2, cyt	yes	N/A	0.481	1.0	0.471	4e-21
Q9D0M5	89	Dynein light chain 2, cyt	no	N/A	0.481	1.0	0.471	4e-21
Q96FJ2	89	Dynein light chain 2, cyt	yes	N/A	0.481	1.0	0.471	4e-21
Q3MHR3	89	Dynein light chain 2, cyt	yes	N/A	0.481	1.0	0.471	4e-21
P63170	89	Dynein light chain 1, cyt	no	N/A	0.481	1.0	0.460	1e-20
P63169	89	Dynein light chain 1, cyt	yes	N/A	0.481	1.0	0.460	1e-20

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.
Drosophila melanogaster (taxid: 7227)

>sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dlc2 PE=3 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 61/83 (73%)

Query: 46  AIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYV 105
            IK VDM++KMQ   I AA  A EK T +++IAA++K  F+++F P W CIVG NFG++V
Sbjct: 3   VIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFV 62

Query: 106 SYESRRFIYFYLGQTGVLLFRNG 128
           ++ESR FIYFYLG    LLF++G
Sbjct: 63  THESRHFIYFYLGTVAFLLFKSG 85

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=3 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 63/89 (70%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+++MQ   +  A  A EK   +++IAA++K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 60/89 (67%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M D    IK  DM+  MQ   I  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Mus musculus (taxid: 10090)

>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Homo sapiens (taxid: 9606)

>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1

 Score =  100 bits (250), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May be involved in some aspects of dynein-related intracellular transport and motility. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.

Bos taurus (taxid: 9913)

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M D    IK  DM+++MQ   +  A  A EK   +++IAA++K  F++++ P W CIVG 
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M D    IK  DM+++MQ   +  A  A EK   +++IAA++K  F++++ P W CIVG 
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
47564127	89	dynein light chain LC8-type 1-like [Mus	0.481	1.0	0.483	2e-20
209878762	89	dynein light chain 1 protein [Cryptospor	0.481	1.0	0.483	2e-20
270009128	157	hypothetical protein TcasGA2_TC015765 [T	0.481	0.566	0.494	3e-20
345110786	92	Chain A, Human Dynein Light Chain (Dynll	0.497	1.0	0.467	3e-20
91085313	89	PREDICTED: similar to dynein light chain	0.481	1.0	0.494	3e-20
115676926	89	PREDICTED: dynein light chain LC6, flage	0.481	1.0	0.494	4e-20
157129438	128	cytoplasmic dynein light chain [Aedes ae	0.513	0.742	0.473	4e-20
197128346	89	putative dynein cytoplasmic light peptid	0.481	1.0	0.483	4e-20
195447132	268	GK25335 [Drosophila willistoni] gi|19416	0.470	0.324	0.482	4e-20
170585424	89	Dynein light chain 1, cytoplasmic [Brugi	0.481	1.0	0.494	4e-20

>gi|47564127|ref|NP_001001185.1| dynein light chain LC8-type 1-like [Mus musculus] gi|28913423|gb|AAH48507.1| CDNA sequence BC048507 [Mus musculus] gi|74221470|dbj|BAE21469.1| unnamed protein product [Mus musculus] gi|148678334|gb|EDL10281.1| mCG49550 [Mus musculus]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 66/89 (74%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M D    IK VDM+++MQ   +R A  A EK +++++IAA++K  F++++ P W CIVG 
Sbjct: 1   MCDRKAVIKTVDMSEEMQQDSVRCAIQALEKYSTEKDIAAHIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV+YE++ F+YFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTYETKHFVYFYLGQVAILLFKSG 89

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|209878762|ref|XP_002140822.1| dynein light chain 1 protein [Cryptosporidium muris RN66] gi|209556428|gb|EEA06473.1| dynein light chain 1 protein, putative [Cryptosporidium muris RN66]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 61/89 (68%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+  MQ   I  A  A E+   +++IAAY+K  F+R++ P W C+VG 
Sbjct: 1   MSDKKAVIKNADMSDDMQQDAISCAAAALERHNVEKDIAAYIKKEFDRKYNPTWHCVVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFY+GQ  VLLF++G
Sbjct: 61  NFGSYVTHETRHFIYFYMGQVAVLLFKSG 89

Source: Cryptosporidium muris RN66

Species: Cryptosporidium muris

Genus: Cryptosporidium

Family: Cryptosporidiidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|270009128|gb|EFA05576.1| hypothetical protein TcasGA2_TC015765 [Tribolium castaneum]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           MTD    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 69  MTDRKAVIKNADMSEDMQQDAVDCATQAIEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 128

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 129 NFGSYVTHETRHFIYFYLGQVAILLFKSG 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345110786|pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper gi|345110787|pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 64/92 (69%)

Query: 37  GTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCI 96
           G+ M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CI
Sbjct: 1   GSHMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCI 60

Query: 97  VGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           VG NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  VGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 92

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91085313|ref|XP_969268.1| PREDICTED: similar to dynein light chain 2 [Tribolium castaneum] gi|332376867|gb|AEE63573.1| unknown [Dendroctonus ponderosae]

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           MTD    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MTDRKAVIKNADMSEDMQQDAVDCATQAIEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|115676926|ref|XP_791800.2| PREDICTED: dynein light chain LC6, flagellar outer arm-like [Strongylocentrotus purpuratus]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           MT+    IK  DMT+ MQ   I  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MTERKAVIKNADMTEDMQQDAIECATTALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|157129438|ref|XP_001655386.1| cytoplasmic dynein light chain [Aedes aegypti] gi|157129440|ref|XP_001655387.1| cytoplasmic dynein light chain [Aedes aegypti] gi|108872207|gb|EAT36432.1| AAEL011478-PA [Aedes aegypti] gi|108872208|gb|EAT36433.1| AAEL011478-PB [Aedes aegypti]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 64/95 (67%)

Query: 34  TPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMW 93
           T   + M+D    IK  DM ++MQ   +  A  A EK   +++IAAY+K  F++R+ P W
Sbjct: 34  TRTSSKMSDRKAVIKNADMGEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKRYNPTW 93

Query: 94  TCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
            CIVG NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 94  HCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 128

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|197128346|gb|ACH44844.1| putative dynein cytoplasmic light peptide transcript variant 1 [Taeniopygia guttata]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 64/89 (71%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+DL   IK  DM+K+MQ   +  A  A EK   +++IAA++K  F++++ P W CIVG 
Sbjct: 1   MSDLFAGIKNADMSKEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195447132|ref|XP_002071078.1| GK25335 [Drosophila willistoni] gi|194167163|gb|EDW82064.1| GK25335 [Drosophila willistoni]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 61/87 (70%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFR 126
           NFG+YV++E+R FIYFYLGQ  +LLF+
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFK 87

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170585424|ref|XP_001897484.1| Dynein light chain 1, cytoplasmic [Brugia malayi] gi|312081349|ref|XP_003142990.1| neuronal nitric oxidse synthase inhibitor [Loa loa] gi|158595163|gb|EDP33736.1| Dynein light chain 1, cytoplasmic, putative [Brugia malayi] gi|307761842|gb|EFO21076.1| dynein light chain 2 [Loa loa] gi|324560219|gb|ADY49841.1| Dynein light chain 2, partial [Ascaris suum] gi|402589257|gb|EJW83189.1| dynein light chain 1 [Wuchereria bancrofti]

 Score =  103 bits (256), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 62/89 (69%)

Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           MTD    IK  DM++ MQ   I  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MTDRKAVIKNADMSEDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	185
FB|FBgn0011760	89	ctp "cut up" [Drosophila melan	0.481	1.0	0.483	4.9e-21
ZFIN|ZDB-GENE-030828-11	126	dynll2a "dynein, light chain,	0.481	0.706	0.483	6.3e-21
ZFIN|ZDB-GENE-040426-1961	89	dynll1 "dynein, light chain, L	0.481	1.0	0.471	6.3e-21
POMBASE|SPAC926.07c	85	dlc2 "dynein light chain Dlc2	0.443	0.964	0.548	8e-21
FB|FBgn0026141	89	Cdlc2 "Cytoplasmic dynein ligh	0.481	1.0	0.471	1.3e-20
UNIPROTKB|F1NRI4	91	DYNLL2 "Uncharacterized protei	0.481	0.978	0.471	1.7e-20
UNIPROTKB|Q3MHR3	89	DYNLL2 "Dynein light chain 2,	0.481	1.0	0.471	1.7e-20
UNIPROTKB|E2RFR5	91	DYNLL2 "Uncharacterized protei	0.481	0.978	0.471	1.7e-20
UNIPROTKB|Q96FJ2	89	DYNLL2 "Dynein light chain 2,	0.481	1.0	0.471	1.7e-20
UNIPROTKB|F2Z536	89	DYNLL2 "Uncharacterized protei	0.481	1.0	0.471	1.7e-20

FB|FBgn0011760 ctp "cut up" [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 43/89 (48%), Positives = 63/89 (70%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

GO:0005856 "cytoskeleton" evidence=NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS;NAS

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

GO:0007290 "spermatid nucleus elongation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045505 "dynein intermediate chain binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP

GO:0006914 "autophagy" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0034454 "microtubule anchoring at centrosome" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005814 "centriole" evidence=IDA

ZFIN|ZDB-GENE-030828-11 dynll2a "dynein, light chain, LC8-type 2a" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 43/89 (48%), Positives = 62/89 (69%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             MTD    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:    38 MTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 97

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct:    98 NFGSYVTHETKHFIYFYLGQVAILLFKSG 126

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043186 "P granule" evidence=IDA

ZFIN|ZDB-GENE-040426-1961 dynll1 "dynein, light chain, LC8-type 1" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 42/89 (47%), Positives = 63/89 (70%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

POMBASE|SPAC926.07c dlc2 "dynein light chain Dlc2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 45/82 (54%), Positives = 61/82 (74%)

Query:    47 IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
             IK VDM++KMQ   I AA  A EK T +++IAA++K  F+++F P W CIVG NFG++V+
Sbjct:     4 IKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVT 63

Query:   107 YESRRFIYFYLGQTGVLLFRNG 128
             +ESR FIYFYLG    LLF++G
Sbjct:    64 HESRHFIYFYLGTVAFLLFKSG 85

GO:0000743 "nuclear migration involved in conjugation with cellular fusion" evidence=IC

GO:0003774 "motor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISO

GO:0005874 "microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=ISO

GO:0007018 "microtubule-based movement" evidence=IC

GO:0030029 "actin filament-based process" evidence=ISO

GO:0030437 "ascospore formation" evidence=IC

GO:0030989 "dynein-driven meiotic oscillatory nuclear movement" evidence=IC

GO:0031122 "cytoplasmic microtubule organization" evidence=IGI

FB|FBgn0026141 Cdlc2 "Cytoplasmic dynein light chain 2" [Drosophila melanogaster (taxid:7227)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 42/89 (47%), Positives = 63/89 (70%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM+++MQ   +  A  A EK   +++IAA++K  F++++ P W CIVG 
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct:    61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

GO:0005856 "cytoskeleton" evidence=NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=NAS

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|F1NRI4 DYNLL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:     3 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct:    63 NFGSYVTHETKHFIYFYLGQVAILLFKSG 91

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q3MHR3 DYNLL2 "Dynein light chain 2, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RFR5 DYNLL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:     3 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct:    63 NFGSYVTHETKHFIYFYLGQVAILLFKSG 91

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|Q96FJ2 DYNLL2 "Dynein light chain 2, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0008039 "synaptic target recognition" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0016459 "myosin complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|F2Z536 DYNLL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query:    40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
             M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct:     1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query:   100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct:    61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

GO:0016459 "myosin complex" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UR05	DYL1_SCHPO	No assigned EC number	0.5421	0.4486	0.9764	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	185
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	9e-33
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	4e-29
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	2e-10

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  112 bits (282), Expect = 9e-33
 Identities = 38/82 (46%), Positives = 57/82 (69%)

Query: 47  IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
           +K  DM ++MQ   I  A  A EK   +++IAA++K  F++++ P W CIVG NFG+YV+
Sbjct: 5   VKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSYVT 64

Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
           +E++ FIYFY+GQ   LLF+ G
Sbjct: 65  HETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score =  102 bits (257), Expect = 4e-29
 Identities = 42/90 (46%), Positives = 63/90 (70%)

Query: 39  LMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVG 98
           +M+D    +K  DM++ MQ   I  A  A EK   +++IAAY+K  F++++ P W CIVG
Sbjct: 1   MMSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVG 60

Query: 99  TNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
            NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  RNFGSYVTHETKHFIYFYLGQVAILLFKSG 90

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 55.4 bits (133), Expect = 2e-10
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 31  QKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQ---EEIAAYLKNRFNR 87
           +K   Q     +L V ++  DM   +Q      A+   +    +   + +A  LK  F+ 
Sbjct: 22  KKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDS 81

Query: 88  RFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFR 126
            + P W CIVGT+FG+YV++ +  F+YF + +  +LLF+
Sbjct: 82  AYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFK 120

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	185
PTZ00059	90	dynein light chain; Provisional	100.0
KOG3430|consensus	90		100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	96.77

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=3.4e-36  Score=224.12  Aligned_cols=89  Identities=47%  Similarity=0.958  Sum_probs=86.7

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740         40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ  119 (185)
Q Consensus        40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~  119 (185)
                      |++.+++|+.+|||++||++|++++.+|+++|+.+++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus         2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~   81 (90)
T PTZ00059          2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ   81 (90)
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECC
Confidence            67778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy13740        120 TGVLLFRNG  128 (185)
Q Consensus       120 ~a~LLwKT~  128 (185)
                      ++|||||++
T Consensus        82 ~~vLlfK~~   90 (90)
T PTZ00059         82 VAILLFKSG   90 (90)
T ss_pred             EEEEEEecC
Confidence            999999985

>KOG3430|consensus

Probab=100.00  E-value=7.5e-36  Score=223.25  Aligned_cols=89  Identities=43%  Similarity=0.852  Sum_probs=86.3

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeC
Q psy13740         40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCT-SQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLG  118 (185)
Q Consensus        40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~-~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig  118 (185)
                      |++.+++|+.+|||++||++|+++|++|+++|+ ++++||..||++||++||++||||||++|||+|||++++||||++|
T Consensus         1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g   80 (90)
T KOG3430|consen    1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLG   80 (90)
T ss_pred             CCCccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEec
Confidence            567889999999999999999999999999999 7899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEecC
Q psy13740        119 QTGVLLFRNG  128 (185)
Q Consensus       119 ~~a~LLwKT~  128 (185)
                      .++|||||+.
T Consensus        81 ~l~illfK~~   90 (90)
T KOG3430|consen   81 VLAILLFKCA   90 (90)
T ss_pred             eEEEEEEecC
Confidence            9999999984

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=6.7e-35  Score=230.85  Aligned_cols=96  Identities=29%  Similarity=0.581  Sum_probs=90.3

Q ss_pred             CCCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEE
Q psy13740         38 TLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCT---SQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIY  114 (185)
Q Consensus        38 ~~Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~---~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~  114 (185)
                      -+..+.++.|+.+|||.+||++|+++|..||++++   ++++||.+||++||++|||+||||||++|||+|||++++|||
T Consensus        29 ~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIy  108 (128)
T PLN03058         29 DQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLY  108 (128)
T ss_pred             hhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEE
Confidence            34566899999999999999999999999999974   679999999999999999999999999999999999999999


Q ss_pred             EEeCCEEEEEEecCCChhh
Q psy13740        115 FYLGQTGVLLFRNGSILHD  133 (185)
Q Consensus       115 F~ig~~a~LLwKT~~~~~~  133 (185)
                      |++|+++||||||+.++.+
T Consensus       109 F~ig~~aiLLfKt~~~~~~  127 (128)
T PLN03058        109 FSIDKVYILLFKTAVEPLD  127 (128)
T ss_pred             EEECCEEEEEEeccCccCC
Confidence            9999999999999998765

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=4.7e-35  Score=215.87  Aligned_cols=89  Identities=36%  Similarity=0.746  Sum_probs=84.9

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740         40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ  119 (185)
Q Consensus        40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~  119 (185)
                      |++.+++|+.+|||++||++|+++|.+|+++++++++||++||+.||++|||+||||||++||+++||++++++||++++
T Consensus         1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~   80 (89)
T PF01221_consen    1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGN   80 (89)
T ss_dssp             SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETT
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECC
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy13740        120 TGVLLFRNG  128 (185)
Q Consensus       120 ~a~LLwKT~  128 (185)
                      ++||||||+
T Consensus        81 ~~~li~kt~   89 (89)
T PF01221_consen   81 IAFLIFKTQ   89 (89)
T ss_dssp             EEEEEEEE-
T ss_pred             EEEEEEecC
Confidence            999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=96.77  E-value=0.014  Score=41.74  Aligned_cols=54  Identities=11%  Similarity=0.132  Sum_probs=46.7

Q ss_pred             CChHHHHHHHHHHhcccCCCceEEEEeC-CceeeEEEccCcEEEEEeCCEEEEEEe
Q psy13740         72 TSQEEIAAYLKNRFNRRFEPMWTCIVGT-NFGAYVSYESRRFIYFYLGQTGVLLFR  126 (185)
Q Consensus        72 ~~ekdIA~~IK~~LDkkYG~~WHCIVGk-sFGS~VTHe~~~fI~F~ig~~a~LLwK  126 (185)
                      .+...+++.|...+.++||+.+-|||++ +|...+... ..|--...+++..++|+
T Consensus        22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            5668899999999999999999999999 666665555 77888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	185
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		2e-23
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		4e-23
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		5e-23
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		6e-23
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		9e-23
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		1e-22
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-22
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		6e-22
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		1e-21
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		5e-21
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		5e-21
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		5e-21
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		1e-11

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 64/92 (69%)
Query: 37  GTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCI 96
           G+ M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CI
Sbjct: 1   GSHMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCI 60
Query: 97  VGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           VG NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  VGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 92

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score =  103 bits (258), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 3   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 63  NFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score =  103 bits (257), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF+ G
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKEG 89

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score =  102 bits (255), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 62/89 (69%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM+++MQ   +  A  A EK   + +IAAY+K  F++++ P W CIVG 
Sbjct: 3   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+R FIYFYLGQ  +LLF++G
Sbjct: 63  NFGSYVTHETRHFIYFYLGQVAILLFKSG 91

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 35  PQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWT 94
           P G+ M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W 
Sbjct: 2   PLGS-MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWH 60
Query: 95  CIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           CIVG NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  CIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 94

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 62/89 (69%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M D    IK  DM+++MQ   +  A  A EK   +++IAA++K  F++++ P W CIVG 
Sbjct: 1   MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  NFGSYVTHETKHFIYFYLGQVAILLFKSG 89

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 62/83 (74%)
Query: 46  AIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYV 105
            +K VDMT++MQ   I  A  A +K   +++IAA++K  F+R+++P W C+VG NFG+YV
Sbjct: 20  VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYV 79
Query: 106 SYESRRFIYFYLGQTGVLLFRNG 128
           ++E++ FIYFY+GQ  +LLF++G
Sbjct: 80  THETKNFIYFYIGQVAILLFKSG 102

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVG- 98
           M+D    IK  DM++ MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG 
Sbjct: 1   MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 99  -TNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
             NFG+YV++E++ FIYFYLGQ  +LLF++G
Sbjct: 61  SGNFGSYVTHETKHFIYFYLGQVAILLFKSG 91

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 40  MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
           M D    IK  DM + +Q   I  A  A EK   +++IAA++K  F+R+  P W C+VG 
Sbjct: 1   MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           NFG+YV++E+  FIYFY+GQ  VLLF++G
Sbjct: 61  NFGSYVTHETHHFIYFYIGQVAVLLFKSG 89

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 47  IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
           IK  DM+++MQ   +  A  A EK   +++IAA++K  F++++ P W CIVG NFG+YV+
Sbjct: 4   IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 63
Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
           +E++ FIYFYLGQ  +LLF++G
Sbjct: 64  HETKHFIYFYLGQVAILLFKSG 85

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 47  IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
           +K  D+T K++  ++  +K A +K   + +IA  +K + + ++   W  IVG NFG+YV+
Sbjct: 16  VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVT 75
Query: 107 YESRRFIYFYLGQTGVLLFR 126
           +E   F+YFY+G    L+F+
Sbjct: 76  HEKGHFVYFYIGPLAFLVFK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	185
1yo3_A	102	Dynein light chain 1; structural genomics consorti	1e-32
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	4e-31

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  111 bits (279), Expect = 1e-32
 Identities = 40/99 (40%), Positives = 65/99 (65%)

Query: 30  SQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRF 89
           S       + +      +K VDMT++MQ   I  A  A +K   +++IAA++K  F+R++
Sbjct: 4   SHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKY 63

Query: 90  EPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
           +P W C+VG NFG+YV++E++ FIYFY+GQ  +LLF++G
Sbjct: 64  DPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  107 bits (270), Expect = 4e-31
 Identities = 27/82 (32%), Positives = 49/82 (59%)

Query: 47  IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
           +K  D+T K++  ++  +K A +K   + +IA  +K + + ++   W  IVG NFG+YV+
Sbjct: 16  VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVT 75

Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
           +E   F+YFY+G    L+F+  
Sbjct: 76  HEKGHFVYFYIGPLAFLVFKTA 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	185
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=1.6e-38  Score=235.12  Aligned_cols=89  Identities=46%  Similarity=0.911  Sum_probs=85.8

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740         40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ  119 (185)
Q Consensus        40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~  119 (185)
                      |++.+++|+.+|||++||++|+++|.+|+++|+.+++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus         1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~   80 (89)
T 3rjs_A            1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQ   80 (89)
T ss_dssp             --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETT
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECC
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy13740        120 TGVLLFRNG  128 (185)
Q Consensus       120 ~a~LLwKT~  128 (185)
                      ++|||||||
T Consensus        81 ~~iLlfKtg   89 (89)
T 3rjs_A           81 VAVLLFKSG   89 (89)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999999996

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-37  Score=230.20  Aligned_cols=86  Identities=31%  Similarity=0.667  Sum_probs=84.6

Q ss_pred             CCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCCEEE
Q psy13740         43 LPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGV  122 (185)
Q Consensus        43 ~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~~a~  122 (185)
                      .+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||++++||||++|+++|
T Consensus        12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ai   91 (97)
T 4ds1_A           12 STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAF   91 (97)
T ss_dssp             CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecC
Q psy13740        123 LLFRNG  128 (185)
Q Consensus       123 LLwKT~  128 (185)
                      ||||||
T Consensus        92 LlfKtg   97 (97)
T 4ds1_A           92 LVFKTA   97 (97)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999996

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=2.6e-36  Score=228.97  Aligned_cols=89  Identities=44%  Similarity=0.900  Sum_probs=83.8

Q ss_pred             CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740         40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ  119 (185)
Q Consensus        40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~  119 (185)
                      +...+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        14 ~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~   93 (102)
T 1yo3_A           14 LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ   93 (102)
T ss_dssp             ----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence            34468899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecC
Q psy13740        120 TGVLLFRNG  128 (185)
Q Consensus       120 ~a~LLwKT~  128 (185)
                      ++||||||+
T Consensus        94 ~aiLlfKt~  102 (102)
T 1yo3_A           94 VAILLFKSG  102 (102)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	185
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	1e-28

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  100 bits (250), Expect = 1e-28
 Identities = 41/82 (50%), Positives = 60/82 (73%)

Query: 47  IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
           IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG NFG+YV+
Sbjct: 6   IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 65

Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
           +E+R FIYFYLGQ  +LLF++G
Sbjct: 66  HETRHFIYFYLGQVAILLFKSG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	185
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2.2e-37  Score=226.50  Aligned_cols=87  Identities=48%  Similarity=0.966  Sum_probs=84.7

Q ss_pred             CCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCCEE
Q psy13740         42 DLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTG  121 (185)
Q Consensus        42 ~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~~a  121 (185)
                      +.+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||++++||||++|+++
T Consensus         1 e~k~vik~~DM~~em~~~a~~~~~~al~~~~~~~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~~~   80 (87)
T d3e2ba1           1 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVA   80 (87)
T ss_dssp             CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETTEE
T ss_pred             CCcceEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECCEE
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecC
Q psy13740        122 VLLFRNG  128 (185)
Q Consensus       122 ~LLwKT~  128 (185)
                      |||||||
T Consensus        81 ~Ll~Ktg   87 (87)
T d3e2ba1          81 ILLFKSG   87 (87)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999997