Psyllid ID: psy13798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610----
Protein Sequence
MSVNSPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVERGGRDTKLPRDVEGPSPFSAGFSFGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAAIWIFSNRSSSWVFIW
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccHHHHHHHHcHHHEccccccEEEEEccccHHHHcccHHHHccEEEEEccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
msvnspirfhhdKWLWKLcgsvwtgsrfythiwfksplstELYQTMRRVHDAVVSVAgslqstqpEVQYLKERHLQLRQTYLKdstnvfdverggrdtklprdvegpspfsagfsfgstatqpafgagtttsgqgfggfgSATARLCnsigspafgstntfgtpttqqstgfggfgtSTHLVHLVLsrqlplrldfhlapqqhsqhlwagfsfgstatqpafgagtttsgqgfggfgtgtatfgstntstgglfgsggtttaqpgfgssafgtpsaptpafgspafgstntfgtpttqqstgfggfgtstfgsqptqqsglsfnspsttqsgltfgapsgglnfgtpttqatsafgtptqstglsfgnfnsgltfgapsgglnfgtpttqatsafgtptqstglsfgppflfrsnettATLDACVqsfgsttpaqgfgstaqtglsfgtpsatqasggfsfgggtapqtgglnfgtptstqqplfgapattaqtgfsfgtpaatsqpsvgfgaaattqsvgfgapatsqsvtfgaqpasqpsvgfgapattqtglsfgapatsqpalsfgssatgqaagfsfgssapassqpslsfGAAIWIFSNRssswvfiw
Flexible Loop (DISEMBL)
msvnspirfhhdkwLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQtylkdstnvfdverggrdtklprdvegpsPFSAGFSFGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAAIWIFSNRSSSWVFIW
Low Complexity Region (SEG)
MSVNSPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVERGGRDTKLPRDVEgpspfsagfsfgstatQPafgagtttsgqgfggfgsataRLCNSIGSPAfgstntfgtpttqqstgfggfgtstHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQPafgagtttsgqgfggfgtgtatfgstntstgglfgsggtttaQPGFGSSAFGTPSAPTPAFGSPAfgstntfgtpttqqstgfggfgtstfgsqptQQSGLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQAsggfsfgggTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALsfgssatgqaagfsfgssapassqpslsfGAAIWIFSNRSSSWVFIW
Disordered region (IsUnstruct)
******IRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQST*PEVQYLKERHLQLRQTYLKDSTNVFD********************************************GFGGFGSATARLCNSIGSPAFGSTNTFGT****QSTGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATF**************************************************************************************************************************FGNFNSGLTFG****************************SFGPPFLFRSNETTATLDACVQSF**********************************************************************************************************************************************************************SFGAAIWIFSNRSSSWVFI*
Disordered Region (DISOPRED)
****S*I*FHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVA**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FIW
Disordered Region (DISEMBL)
MSVNSPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVERGGRDTKLPRDVEGPSPFSAGFSFGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFG****************TQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFS***********SLSFGAAIWIFSNRSSSWVFIW
Disordered Region (DISPRO)
****SPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SSW*FIW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVNSPIRFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVERGGRDTKLPRDVEGPSPFSAGFSFGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAAIWIFSNRSSSWVFIW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	614	2.2.26 [Sep-21-2011]
Q9BVL2	599	Nucleoporin p58/p45 OS=Ho	yes	N/A	0.115	0.118	0.342	3e-07
Q8R332	587	Nucleoporin p58/p45 OS=Mu	yes	N/A	0.115	0.120	0.342	5e-07
P70581	585	Nucleoporin p58/p45 OS=Ra	yes	N/A	0.115	0.121	0.342	9e-07
Q9VDV3	546	Probable nucleoporin Nup5	yes	N/A	0.115	0.130	0.342	5e-06

>sp|Q9BVL2|NUPL1_HUMAN Nucleoporin p58/p45 OS=Homo sapiens GN=NUPL1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 41  ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVERGGRDT-- 98
           +L   M++++   V++A  LQS    V+ LKE++L  R+ +L D+ +VF+  R       
Sbjct: 384 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFETRRAEAKKWQ 443

Query: 99  KLPRDVEGPSPFS 111
             PR   GP+PFS
Sbjct: 444 NTPRVTTGPTPFS 456

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.
Homo sapiens (taxid: 9606)

>sp|Q8R332|NUPL1_MOUSE Nucleoporin p58/p45 OS=Mus musculus GN=Nupl1 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 41  ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVER--GGRDT 98
           +L   M++++   V++A  LQS    V+ LKE++L  R+ +L D+ +VF+  R    +  
Sbjct: 372 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLGYRKMFLGDAVDVFEARRTEAKKWQ 431

Query: 99  KLPRDVEGPSPFS 111
             PR   GP+PFS
Sbjct: 432 NAPRVTTGPTPFS 444

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.

Mus musculus (taxid: 10090)

>sp|P70581|NUPL1_RAT Nucleoporin p58/p45 OS=Rattus norvegicus GN=Nupl1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 41  ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFDVER--GGRDT 98
           +L   M++++   V++A  LQS    V+ LKE++L  R+ +L D+ +VF+  R    +  
Sbjct: 370 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDAGDVFEARRTEAKKWQ 429

Query: 99  KLPRDVEGPSPFS 111
             PR   GP+PFS
Sbjct: 430 NAPRVTTGPTPFS 442

Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane.

Rattus norvegicus (taxid: 10116)

>sp|Q9VDV3|NUPL1_DROME Probable nucleoporin Nup58 OS=Drosophila melanogaster GN=Nup58 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 2/73 (2%)

Query: 41  ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDSTNVFD-VERGGRDTK 99
           +L +  R+++++ +S+AG L      V+  KE +L LR+  L+D+TNVF+ ++     T 
Sbjct: 451 DLKRGFRQLNESFISLAGRLHEVHQRVEEHKEHYLNLRRYRLRDTTNVFERIDNPPLPTV 510

Query: 100 LPRDV-EGPSPFS 111
            P+ +  GP+PFS
Sbjct: 511 EPQRISSGPTPFS 523

Probable component of some nuclear pore complex, a complex required for the trafficking across the nuclear membrane.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
91081351	609	PREDICTED: similar to AGAP008772-PA [Tri	0.351	0.354	0.446	1e-14
270006109	563	hypothetical protein TcasGA2_TC008264 [T	0.348	0.380	0.439	1e-14
156097114	2085	hypothetical protein [Plasmodium vivax S	0.583	0.171	0.307	2e-10
345487767	565	PREDICTED: hypothetical protein LOC10011	0.171	0.185	0.348	9e-10
156100839	5707	hypothetical protein [Plasmodium vivax S	0.486	0.052	0.282	2e-09
221054366	2082	hypothetical protein, conserved in Plasm	0.713	0.210	0.270	8e-09
367012015	1483	hypothetical protein TDEL_0C04080 [Torul	0.363	0.150	0.346	3e-08
391337862	1653	PREDICTED: nuclear pore complex protein	0.614	0.228	0.339	7e-08
328698009	1734	PREDICTED: hypothetical protein LOC10016	0.527	0.186	0.326	1e-07
347967723	604	AGAP002367-PA [Anopheles gambiae str. PE	0.338	0.344	0.308	2e-06

>gi|91081351|ref|XP_970964.1| PREDICTED: similar to AGAP008772-PA [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 117/262 (44%), Positives = 147/262 (56%), Gaps = 46/262 (17%)

Query: 361 STGLSFGNFNSGL-TFGAPSGGLNFGTPTTQATSAFG---TPTQSTGLSFGPPFLFRSNE 416
           +TG SFG   +   TFG  +G + FGTP  Q +  FG    PT +       P LF S  
Sbjct: 2   ATGFSFGAKTTAPPTFG--TGSITFGTPANQPSQQFGFGNAPTST-------PNLFGSQP 52

Query: 417 TTATLDACVQSFGSTTP-----AQGFGST--------AQTGLSFGTPSATQASGGFSFGG 463
            T+T       FG+TTP     AQ  GST        A TGLSFGTP++T AS G +F  
Sbjct: 53  ATSTPSTGF-GFGATTPGFGAAAQNPGSTSFGFGAPAANTGLSFGTPASTAASTGLAF-- 109

Query: 464 GTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATT-QSVGF 522
              P + GL+F TP ST    FG PA+T   G SFGTPAA++   + FGA A+T  + G 
Sbjct: 110 -KPPASTGLSFATPASTGLS-FGTPAST---GLSFGTPAAST--GLSFGAPASTGLTFGT 162

Query: 523 GAPATSQSVTFGAQPASQPSVG--FGAPATTQ-TGLSFGAPATSQPA--LSFGSSATGQA 577
              A S  ++FGA   S PS G  FGAPA+TQ TGLSFGAPA S PA   +FG++ +   
Sbjct: 163 STSAPSTGLSFGAS-TSAPSTGLSFGAPASTQSTGLSFGAPA-STPATGFNFGATTSAST 220

Query: 578 AGFSFGSSAPASSQPSLSFGAA 599
            G SFG+++ A+  PSLSFG A
Sbjct: 221 LGLSFGATSTAA--PSLSFGGA 240

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006109|gb|EFA02557.1| hypothetical protein TcasGA2_TC008264 [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 116/264 (43%), Positives = 147/264 (55%), Gaps = 50/264 (18%)

Query: 361 STGLSFGNFNSGL-TFGAPSGGLNFGTPTTQATSAFG---TPTQSTGLSFGPPFLFRSNE 416
           +TG SFG   +   TFG  +G + FGTP  Q +  FG    PT +       P LF S  
Sbjct: 2   ATGFSFGAKTTAPPTFG--TGSITFGTPANQPSQQFGFGNAPTST-------PNLFGSQP 52

Query: 417 TTATLDACVQSFGSTTPAQGFGSTAQ---------------TGLSFGTPSATQASGGFSF 461
            T+T       FG+TTP  GFG+ AQ               TGLSFGTP++T AS G +F
Sbjct: 53  ATSTPSTGF-GFGATTP--GFGAAAQNPGSTSFGFGAPAANTGLSFGTPASTAASTGLAF 109

Query: 462 GGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATT-QSV 520
                P + GL+F TP ST    FG PA+T   G SFGTPAA++   + FGA A+T  + 
Sbjct: 110 ---KPPASTGLSFATPASTGLS-FGTPAST---GLSFGTPAAST--GLSFGAPASTGLTF 160

Query: 521 GFGAPATSQSVTFGAQPASQPSVG--FGAPATTQ-TGLSFGAPATSQPA--LSFGSSATG 575
           G    A S  ++FGA   S PS G  FGAPA+TQ TGLSFGAPA S PA   +FG++ + 
Sbjct: 161 GTSTSAPSTGLSFGAS-TSAPSTGLSFGAPASTQSTGLSFGAPA-STPATGFNFGATTSA 218

Query: 576 QAAGFSFGSSAPASSQPSLSFGAA 599
              G SFG+++ A+  PSLSFG A
Sbjct: 219 STLGLSFGATSTAA--PSLSFGGA 240

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156097114|ref|XP_001614590.1| hypothetical protein [Plasmodium vivax Sal-1] gi|148803464|gb|EDL44863.1| hypothetical protein, conserved [Plasmodium vivax]

 Score = 73.9 bits (180), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 142/462 (30%), Positives = 184/462 (39%), Gaps = 104/462 (22%)

Query: 213 FGSTATQPAFGAGTTTSGQG-FGGFG--------TGTATFG---STNTSTGGLFGSGGTT 260
           FG T    A   GT  S +G FGG          + +  FG   S  TS+G +FG+   +
Sbjct: 129 FGGTTNLNA--PGTNMSNKGIFGGMQQNNQSSAPSSSNLFGNLSSNQTSSGNMFGN--LS 184

Query: 261 TAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFG--------------TPTTQQSTGFGGF 306
           +A    G+S FGT S      GS  FG+ +  G                 +  S+ FGG 
Sbjct: 185 SANQNKGNSLFGTSSQSNQTAGSNMFGNASPMGQNKGGGLFGALQSSNQGSTSSSMFGGA 244

Query: 307 --GTSTFGSQPTQQSGLSFNSPSTTQSGLTFG--------APSGGLNFG---TPTTQAT- 352
             G S      T   G+S ++P+   SG  FG         PSGGL FG   TPT  +T 
Sbjct: 245 AGGMSQNKGSSTLFGGMSGSTPTNAGSGNLFGNASPMNQNKPSGGL-FGAMQTPTQGSTS 303

Query: 353 -----SAFGTPTQSTGL-----SFGNFNSGLT----------FGAPSGGLNFG---TPTT 389
                SA G  +Q+ G      SFG  N G T           G   GG  FG   TPT 
Sbjct: 304 NSMFGSAAGGMSQNKGSSIFGGSFGTANQGSTQSNMFGNASSMGQNKGGGLFGALQTPTQ 363

Query: 390 QATSA--FGTPTQSTGLSFGPPFLFRS-NETTATLDACVQSFGSTTPAQGFGSTAQTGLS 446
            +TS+  FG        + G   LF   + +T T       FG+T+P     S  + G  
Sbjct: 364 GSTSSSMFGGAAGGMSQNKGSSTLFGGMSGSTPTNTGSGNLFGNTSPM----SQNKPGGV 419

Query: 447 FG---TPSATQASGGFSFGGGTA----PQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFG 499
           FG   +PS    S    FGG  A    P TGG  FG  +ST       P T+A TG    
Sbjct: 420 FGNLQSPSQGTTSSSNMFGGLGASQAKPATGGNLFGGMSST-------PGTSATTGTGSN 472

Query: 500 TPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGA 559
               T Q S     +    S+  G  A S S  FGA P+  PS      ATT  G +  +
Sbjct: 473 LFGGTVQGSQNKTGSNIFGSLSGGTQAGSSSSLFGATPS--PS------ATTMGGNNVFS 524

Query: 560 PATSQPALS------FGSSAT-GQAAGFSFGSSAPASSQPSL 594
           P+ + P         FG   T GQ+   +  ++  ASS P L
Sbjct: 525 PSMTTPTSQNKFNNLFGQVGTAGQSTSVNSAATTGASSTPGL 566

Source: Plasmodium vivax Sal-1

Species: Plasmodium vivax

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|345487767|ref|XP_001603159.2| PREDICTED: hypothetical protein LOC100119372 [Nasonia vitripennis]

 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 8   RFHHDKWLWKLCGSVWTGSRFYTHIWFKSPLSTELYQTMRRVHDAVVSVAGSLQSTQPEV 67
            F HD  L+K      T     T +  K+    EL   M ++H+++V+VAG LQ    +V
Sbjct: 431 NFEHDLMLFK-SQIEATEKHIQTMMTPKTLTPQELTMAMSKLHESLVAVAGRLQGVHSKV 489

Query: 68  QYLKERHLQLRQTYLKDSTNVFD---VERGGRDTKLPRDVEGPSPFSAG 113
           Q  KE++L  R+  LKDSTNVF+    +R      + +   GP+PF  G
Sbjct: 490 QQQKEQYLNFRKYVLKDSTNVFEDIKTDRNSSRNSIGKVTSGPTPFGPG 538

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156100839|ref|XP_001616113.1| hypothetical protein [Plasmodium vivax Sal-1] gi|148804987|gb|EDL46386.1| hypothetical protein, conserved [Plasmodium vivax]

 Score = 70.9 bits (172), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 118/417 (28%), Positives = 152/417 (36%), Gaps = 118/417 (28%)

Query: 243  FGSTNTSTGGLFGSGGTTTA------QPGFGSSAFGTPSAPTPAFG-SPA---------- 285
            F   + + GGLF  GGTTT         G  SS FG+    T   G +PA          
Sbjct: 2193 FTQQSATPGGLFNPGGTTTTLFNERNNFGMNSSTFGSGLTNTGTIGTTPAASPFSFMRTD 2252

Query: 286  --FGSTNTFGTPTT------------------------QQSTGFGGFGTSTFGSQPTQQS 319
               G+T+T G P+T                          +TG G FGT   G+     S
Sbjct: 2253 NQVGATSTLGMPSTGLATQPSGGTGSLFGSSSSPSGLMNSTTGGGLFGTQRGGALSASPS 2312

Query: 320  GLSF---NSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFG 376
              +    N+ +  +    + +PS     GT TT A S       S+ +S G  N G   G
Sbjct: 2313 MAASSLENARTAYEPSARWASPSLA---GTATTPAASF------SSFMSGGTINKGAAVG 2363

Query: 377  APSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQG 436
              +GGL F TPT+   +       +TG S                      FGS T    
Sbjct: 2364 T-TGGL-FNTPTSALVTNSSANKPATGSSL---------------------FGSNT---- 2396

Query: 437  FGSTAQTGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGF 496
               T+ TGL FG PS T +SG F F  G A     L      S    LF AP ++   G 
Sbjct: 2397 ---TSSTGL-FG-PSGTTSSGAFGFNQGGAASNSAL-----MSNTNKLFSAPGSSGNLGS 2446

Query: 497  SFGTPAATSQPSVGFGAA---------------ATTQSVG--FGAPATSQSVTFGAQPAS 539
            + G   +++Q     GA                 T QS G  FG+   S    FG   A 
Sbjct: 2447 NAG--GSSNQMLTQGGATSGVSGLGGGGRSLFGGTQQSGGGLFGSAQQSGGGLFGG--AQ 2502

Query: 540  QPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLSF 596
            Q   G    A    G  FG+   S   L FGS+   Q+ G  FG S   SS P+  F
Sbjct: 2503 QSGGGLFGGAQQSGGGLFGSAQQSGGGL-FGSAQ--QSGGGLFGGS--TSSNPNQQF 2554

Source: Plasmodium vivax Sal-1

Species: Plasmodium vivax

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|221054366|ref|XP_002258322.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H] gi|193808391|emb|CAQ39094.1| hypothetical protein, conserved in Plasmodium species [Plasmodium knowlesi strain H]

 Score = 68.6 bits (166), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 145/537 (27%), Positives = 200/537 (37%), Gaps = 99/537 (18%)

Query: 125 FGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTG--------FGGFG 176
           FG  +  +    G  G +   + NS    + G  N FG  T   + G        FGG  
Sbjct: 94  FGGSSVGNSANQGNMGGSNLFM-NSSNQNSLGMKNIFGGTTNLNTPGTNLANKGIFGGMQ 152

Query: 177 TSTHLVHLVLSRQLPLRLDFHLAPQQHSQ-HLWAGFSFGSTATQPAFGAGTTTSGQGFGG 235
            +        S      L  +L+  Q S  +++   S  + +   +    T+ S Q  G 
Sbjct: 153 QNNQS-----SAPSSSNLFGNLSSNQTSSGNMFGNLSSTNQSKGNSLFGATSQSNQTPGS 207

Query: 236 FGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFG-- 293
              G A+  + N  +GGLFG+  TT  Q    SS FG+ +       S   GST  FG  
Sbjct: 208 NMFGNASSMNQNKPSGGLFGALQTTN-QGNTSSSMFGSATGGM----SQNKGSTTLFGGM 262

Query: 294 ---TPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLT----FGAPSGGLNFGT 346
              TPTT  S    G  +S   ++P   SG  F +  TT  G T    FG+ +GG++   
Sbjct: 263 SGNTPTTAGSGNLFGNASSMNQNKP---SGGLFGALQTTNQGNTGSSMFGSAAGGMSQNK 319

Query: 347 PTTQATSAFGTPTQSTGLS--FGNFNSGLTFGAPSGGLNFGTPTTQ----ATSAFGTPTQ 400
            T+    +FGT  Q +  S  FGN +S +    PSGGL     TT      +S FG+   
Sbjct: 320 GTSLFGGSFGTANQGSTQSNMFGNASS-MNQNKPSGGLFGALQTTNQGNTGSSMFGSAAG 378

Query: 401 STGLSFGPPFLF----RSNETTA---TLDACVQSFGSTTPAQGFG-------STAQTGLS 446
               + G   LF     +  TTA    L     S     P   FG       ST  T   
Sbjct: 379 GMSQNKGSTTLFGGMSGNTPTTAGSGNLFGNASSMNQNKPGGVFGNLQSPSQSTTGTSNM 438

Query: 447 FGTPSATQ---ASGGFSFGG-----------------------GTAPQTGGLNFGT---- 476
           FG   A+Q   A+GG  FGG                       G+  +TG   FGT    
Sbjct: 439 FGGLGASQAKPATGGNLFGGMSSTPGTSGTTGTGSNLFGSTVQGSQNKTGSNIFGTLSGG 498

Query: 477 -PTSTQQPLFGAPATTA-----QTGFSFGTPAATSQPSVG--FGAAAT-TQSVGFGAPAT 527
               +   LFGA  +T+        F+     ATSQ      FG   T  QS    +  T
Sbjct: 499 TQGGSSSGLFGATTSTSTPMGGNNVFASSMTTATSQNKFNSIFGQVGTGGQSTSVNSATT 558

Query: 528 SQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGS 584
             S T G    +Q         +  TG + G    S+       +  G ++GFS GS
Sbjct: 559 GISSTPGLGGGTQSGSTGNMFGSVSTGTNLGGVGDSK-------NIFGTSSGFSLGS 608

Source: Plasmodium knowlesi strain H

Species: Plasmodium knowlesi

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|367012015|ref|XP_003680508.1| hypothetical protein TDEL_0C04080 [Torulaspora delbrueckii] gi|359748167|emb|CCE91297.1| hypothetical protein TDEL_0C04080 [Torulaspora delbrueckii]

 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 142/297 (47%), Gaps = 74/297 (24%)

Query: 102 RDVEGPSPFSAGFSFGSTAT--QPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTN 159
           +D     PFS    +G+ A    PAFG    T   G   FG++ A+       PAFG T 
Sbjct: 484 KDDSAAQPFSI---YGNKAAFGAPAFG----TPAFGTPAFGASDAK-------PAFGQT- 528

Query: 160 TFGTPTTQQSTGFGGFGTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQ 219
           +FG+  T+ + G   FGT                LD        S+  +   SFGS+ ++
Sbjct: 529 SFGSSDTKSAFGAPAFGT----------------LD--------SKSPFGAPSFGSSDSK 564

Query: 220 PAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFG--SGGTTTAQPGFGSSAFGTPSAP 277
           PAFG  +      FGG G G  +FGS+++     FG  S G + ++PGFG+ +FG+ S  
Sbjct: 565 PAFGTPS------FGGSGFGALSFGSSDSKP--TFGNPSFGGSDSKPGFGAPSFGS-SDS 615

Query: 278 TPAFGSPAFGSTN---TFGTPTTQQSTGFGGFGTSTFGSQPTQQS--GLSFNSPSTTQSG 332
            P FG+P+FG ++   TFG P+   S     FG  +FGS  T+ +  G +F S  T  S 
Sbjct: 616 KPTFGNPSFGGSDSKPTFGNPSFGGSDSKPAFGAPSFGSSDTKSAFGGPAFGSSDTKAS- 674

Query: 333 LTFGAPS-----GGLNFGTPT---TQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGG 381
             FGAPS         FGTP+   + +  AFG P      SFGN NS  TFG P+ G
Sbjct: 675 --FGAPSFESADSKPAFGTPSFGGSDSKPAFGAP------SFGNLNSKPTFGKPAFG 723

Source: Torulaspora delbrueckii

Species: Torulaspora delbrueckii

Genus: Torulaspora

Family: Saccharomycetaceae

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|391337862|ref|XP_003743283.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like [Metaseiulus occidentalis]

 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 182/536 (33%), Positives = 219/536 (40%), Gaps = 159/536 (29%)

Query: 116 FGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTGFGGF 175
           FG    +P FG GT++ GQ   GFG           +  FG T+TFGTP TQ S G  G 
Sbjct: 2   FGQQQNKP-FGFGTSSFGQS-TGFGQPQ--------TSVFGQTSTFGTPATQ-SGGLFGQ 50

Query: 176 GTSTHLVHLVLSRQLPLRLDFHLAPQQHSQHLWAGFSFGSTATQPA-----FGAGTTTSG 230
            TST                   APQQ  Q+    F FGST  QP+     FG    T  
Sbjct: 51  STSTFG-----------------APQQPQQN--TSF-FGST--QPSTQSSLFGQPQQTQT 88

Query: 231 QG---------------FGGFGTGTAT------FGSTNTST-GGLFGSGGTTT---AQPG 265
           Q                FGGFG+ T +      FG  NT+T G LFG     T   AQ G
Sbjct: 89  QANAFGTSAFGSQNRPTFGGFGSTTTSTAGTSLFGQQNTTTTGSLFGQAPANTSVFAQSG 148

Query: 266 FGSSAFGTPSAPTPAFGSPAFGSTNTF--GTPTTQQSTGFGGFGTSTFGSQPTQQSGLSF 323
           FG+   G+   PTP F  P  G+      GT    Q+          F ++  ++  +  
Sbjct: 149 FGA---GSSGIPTPQF-KPTIGNDTMIKSGTTINIQTKHQCITCMKEFENKSIEELRVD- 203

Query: 324 NSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQ---STGLSFGNFNSGLTFGAPSG 380
                  +   FG  +   +FG PTT  TS+    T    +TG SF N N    FG   G
Sbjct: 204 ----DYLANRKFGNQNQASSFGAPTTSNTSSLFGQTNTNTNTGFSFTNNNQPKLFG---G 256

Query: 381 GLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGST 440
           G  FG PTTQ TS FGTP        GP                   FGSTT      ST
Sbjct: 257 GTAFGAPTTQPTSTFGTPAAP-----GP-------------------FGSTT------ST 286

Query: 441 AQTGLSFGTPSATQASGGFSFGGGTAPQTG-GLN--------------FGTP-------- 477
           A T + FG  +AT + GGF  G  TAP+   G N              FG P        
Sbjct: 287 ANTSV-FGQSNATPSFGGF--GNTTAPKPAFGFNNTATPTATTQAATPFGAPKPFGATTP 343

Query: 478 ---TSTQQPLFGAPATTAQTGFSFGTPAATSQP--SVGFGAAATTQSVGFGAPA-TSQSV 531
              TST  P FGA  + A+   SFGTP   +    + GFG   +T    FGAPA TS + 
Sbjct: 344 AFGTSTASP-FGATTSQAKPAVSFGTPTFNTSNFGNRGFGTTGST----FGAPAPTSSTF 398

Query: 532 TFGAQPASQPSVGFGA-PATTQTGLSF-----------GAPATSQPALSFGSSATG 575
           TFG    +Q +  FGA P TT    SF             PATSQP  SFG+ A G
Sbjct: 399 TFGPTTTTQSNNIFGAKPTTTSAPFSFTTPTTGSMFNSAPPATSQPFGSFGTPALG 454

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698009|ref|XP_001943544.2| PREDICTED: hypothetical protein LOC100160772 [Acyrthosiphon pisum]

 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 137/419 (32%), Positives = 187/419 (44%), Gaps = 95/419 (22%)

Query: 226  TTTSGQGFGGFGTGTATFGSTN--TSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPA--- 280
            T++S Q F    T  + FG  N  TST  +FG+   TT+Q    +S F TP+  T A   
Sbjct: 1218 TSSSSQIFEIPTTNISMFGMPNNSTSTTSIFGNSTITTSQ----ASIFSTPTNKTSAPSI 1273

Query: 281  FGSPAFGST--NTFGTPT------------TQQSTGFGGFGTSTFGSQPTQQSGLSFNSP 326
            F +P    +  + F TPT            T  S     FG +T     T  S + F SP
Sbjct: 1274 FSTPTITDSAPSIFNTPTNTTCAPSIFSTPTSTSIAPSIFGATT---STTNVSSI-FGSP 1329

Query: 327  S-TTQSGLTFGAPSGGLN---FGTPTTQATSAFGTPTQSTGLS-FGNFNSGLT---FGAP 378
            S T+ +   FGA S   +   FG P     S FGTP+ +T  S FG+  +  T   FG+P
Sbjct: 1330 SNTSMAPSIFGASSTTTSSSIFGNPIKSTPSIFGTPSTTTVSSMFGSVTTTNTTSGFGSP 1389

Query: 379  SGGLNFGTP--TTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQG 436
            +    FG P  TT  TS FG+P Q+T  +FG P                     TT +  
Sbjct: 1390 AQTTTFGAPVTTTNTTSGFGSPAQTT--TFGAPV--------------------TTTSSI 1427

Query: 437  FGSTAQTGLS----FGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTA 492
            FG+ A    +    FG P+    +    FG  +AP + G  FG+ ++    +FGAP TT+
Sbjct: 1428 FGNPAAPATTSSSIFGNPANPATTSSSIFGNPSAPASSGSIFGSASTNTSSVFGAPVTTS 1487

Query: 493  QTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQ 552
             T   FG+P+ T+  S  FG+ A          A +QS +FG     QPS+GF +P +  
Sbjct: 1488 TTSSIFGSPSTTAASSGLFGSVAA---------AANQS-SFG-----QPSLGFSSPGSAF 1532

Query: 553  TGLS-FGAPAT--SQPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAAIWIFSNRSS 608
              +S FG  A   SQPA SF  +A        F  +   SS PSL        FSN+ S
Sbjct: 1533 GNMSLFGQSACNPSQPANSFAPAANP------FAVNKTPSSTPSL--------FSNQKS 1577

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967723|ref|XP_312588.5| AGAP002367-PA [Anopheles gambiae str. PEST] gi|333468330|gb|EAA07479.5| AGAP002367-PA [Anopheles gambiae str. PEST]

 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 112/243 (46%), Gaps = 35/243 (14%)

Query: 347 PTTQATSAFGTPTQSTGLSFGNF--NSGLTFGAPS--GGLNFGTPTTQATSAFGTPTQST 402
           P  Q +  +G P Q+    +G         +GAP+      +G P    +S +G P Q+ 
Sbjct: 281 PARQPSQQYGPPAQAPSSQYGAPAQTPSSQYGAPAQTPSSQYGAPAQTPSSQYGAPAQTP 340

Query: 403 GLSFGPPFLFRSNETTATLDACVQSFGS---TTPAQGFGSTAQTGLS-FGTPSATQASGG 458
              +G P   R +          Q +G+   + P+Q +G+ AQT  S +G P+ T +S  
Sbjct: 341 SSQYGAPAPSRPS----------QQYGAPAPSRPSQQYGAPAQTPSSQYGAPAQTPSS-- 388

Query: 459 FSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQ 518
             +G     QT    +G P  T    +GAPA   Q    +G PA  S+PS  +GA A   
Sbjct: 389 -QYGAPA--QTPSSQYGAPAQTPSSQYGAPAQ--QPSSQYGAPA-PSRPSQQYGAPAQQP 442

Query: 519 SVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQTGLSFGAPATS--------QPALSFG 570
           S  +GAPA + S  +GA   S+PS  +GAPA   +   +GAPA S        QP+  +G
Sbjct: 443 SAQYGAPAQTPSSQYGAPAPSRPSQQYGAPAQAPSSQ-YGAPAPSSQYGAPAQQPSSQYG 501

Query: 571 SSA 573
           + A
Sbjct: 502 APA 504

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	614
DICTYBASE|DDB_G0274915	1839	DDB_G0274915 "unknown" [Dictyo	0.457	0.152	0.339	1.2e-18
POMBASE|SPAC26A3.15c	598	nsp1 "nucleoporin Nsp1" [Schiz	0.361	0.371	0.360	2e-17
RGD|1304977	2067	Nup214 "nucleoporin 214" [Ratt	0.368	0.109	0.347	2.1e-16
FB|FBgn0038722	546	Nup58 "Nucleoporin 58kD" [Dros	0.304	0.342	0.369	1.7e-15
DICTYBASE|DDB_G0289701	1704	DDB_G0289701 "ezrin/radixin/mo	0.465	0.167	0.316	3.5e-15
DICTYBASE|DDB_G0291390	2053	nup98 "putative nucleoporin 98	0.356	0.106	0.386	3.5e-15
DICTYBASE|DDB_G0274587	709	nup62 "nuclear pore protein" [	0.460	0.399	0.320	4.9e-15
TAIR|locus:2012788	1041	AT1G10390 "AT1G10390" [Arabido	0.456	0.268	0.326	8.8e-15
UNIPROTKB|F1NFA8	558	NUP62 "Uncharacterized protein	0.353	0.388	0.330	1.9e-14
WB|WBGene00003797	805	npp-11 [Caenorhabditis elegans	0.371	0.283	0.370	2.2e-13

DICTYBASE|DDB_G0274915 DDB_G0274915 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 268 (99.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 114/336 (33%), Positives = 146/336 (43%)

Query:   268 SSAFGTPSAP-TPAFGS--PAXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXQQSGLS 322
             SS   T + P T  FGS  P+                                   +GL 
Sbjct:  1329 SSTTSTTTTPSTGLFGSTTPSTGLFGSTTTAATTTPSTGLFGSTPSSTTSTTTTPPNGL- 1387

Query:   323 FNS--PSTTQSGLTFGAPSGGLNFGTPTTQATSAFG------TPTQSTGLSFGNFNSGLT 374
             F S  PST   G +  A +  L   T TT +T  FG      T T STGL FG+ +S  T
Sbjct:  1388 FGSTTPSTALFGTSTPATTSTLTTSTSTTPSTGLFGSSSSIATTTPSTGL-FGSTSSSTT 1446

Query:   375 FGAPSGGLNFGTPTTQATSA-FGTP--TQSTGLSFGPPFLFRSNETTATLDACVQS---F 428
               APS GL FG+ TT  T+  FG+   T STGL FG      S+  +++     Q    F
Sbjct:  1447 NTAPSTGL-FGSTTTSTTATPFGSSSSTPSTGL-FGSSSSSTSSSLSSSSTTATQPTGLF 1504

Query:   429 GSTTPAQG-FGSTAQTGLSFGTPSATQAXXXXXXXXXTAPQTGGLNFGTPTSTQQPLFGA 487
             GST P+ G FGST  T  S G   +T           T P TG   FG+ +ST       
Sbjct:  1505 GSTAPSTGLFGSTTATNPSTGLFGST-----TTTSTTTTPSTG--LFGSSSST------- 1550

Query:   488 PATTAQTGFSFGTPAATSQPSVG-FGAAATTQSVGFGAPATSQSVT---FGAQP------ 537
             P++T   G S  T ++T+ PS G FG+AA + S  F  P +S   T   FG+ P      
Sbjct:  1551 PSSTGLFGSSSSTTSSTTTPSTGLFGSAAPSTSSPFSIPTSSTPATSNPFGSNPFPTSSP 1610

Query:   538 ---ASQPSVG-FGAPA---TTQTGLSFGAPATSQPA 566
                +S PS   FGAP+   +T +   FGAP TS  A
Sbjct:  1611 TTVSSTPSSNPFGAPSLSNSTSSSSLFGAPTTSTAA 1646

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPAC26A3.15c nsp1 "nucleoporin Nsp1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 241 (89.9 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 92/255 (36%), Positives = 116/255 (45%)

Query:   321 LSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSG 380
             +SFN  +   SG +FG P+       P + A  A  TP  +TGL FGN N+  +  APSG
Sbjct:     1 MSFNPGNNQNSGFSFGKPA------QPNSAAQGA-ATPA-ATGL-FGNTNNNTSSTAPSG 51

Query:   381 GLNFGTPTTQATSA-----FG---TPTQSTGLSFGPPFLFRSNETTATLDA--CVQSFGS 430
             GL FG+     TSA     FG   T   ST  S   PF F S  T  T  A       GS
Sbjct:    52 GL-FGSNNASNTSAPSTFSFGKAATTGNSTNASTSSPFSFGSTNTNNTAGAKPLFGGLGS 110

Query:   431 TTPAQGFGSTAQTGLSFGTPSATQAXXXXXXXXXTAPQTGGLNFGTPTSTQQPLFGAPAT 490
             T  A   G  ++   S  T +AT           ++      NFG P ST       PA 
Sbjct:   111 TGSANSTGDKSKNTASSATGAATTNPSGSTFNFGSS--NNSFNFGKPASTTNTT--TPAA 166

Query:   491 TAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPAT-SQSVTFGAQPASQPSVGFGAPA 549
              A TG  FG PAAT   S    A++T+ +     PAT S   +FG +PAS  S    + +
Sbjct:   167 -ASTGSLFGKPAATGTTSNAPPASSTSTT-----PATGSGGFSFG-KPASLGSTNNASTS 219

Query:   550 TT-QTGLSFGAPATS 563
             TT  +G SFG PAT+
Sbjct:   220 TTANSGFSFGKPATT 234

GO:0000054 "ribosomal subunit export from nucleus" evidence=ISO

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0017056 "structural constituent of nuclear pore" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0044613 "nuclear pore central transport channel" evidence=ISO

GO:0044615 "nuclear pore nuclear basket" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

GO:0051301 "cell division" evidence=IMP

RGD|1304977 Nup214 "nucleoporin 214" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 89/256 (34%), Positives = 113/256 (44%)

Query:   319 SGLSFNSPS---TTQSGLTFG--APSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGL 373
             SG SF   S   ++ +G  FG  A SGG  FG  +T + S FG+   + G   G F SGL
Sbjct:  1811 SGFSFCQASGFGSSNTGSVFGQAASSGGSVFGQSSTSSGSVFGSGNATRG---GGFFSGL 1867

Query:   374 TFGAPSGGLNFGTPTTQATSAFG-TPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTT 432
               G PS       P + A+  FG TPT +T   FG       N    T      SFG   
Sbjct:  1868 G-GKPSQDAANKNPFSSASGGFGSTPTPNTSNLFG-------NSGAKTFGGFGSSFGEQK 1919

Query:   433 PA----QGFGSTAQTGLSFGTPSATQAXXXXXXXXXTAPQTGGL-NFG-TPTSTQQPLFG 486
             PA     G GS A  G  F TP+ T           + P  GG   FG  P     P F 
Sbjct:  1920 PAGTFSSGGGSVASQGFGFSTPNKT-GGFGAAPVFGSPPTFGGSPGFGGVPAFGSAPAFT 1978

Query:   487 AP-ATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGF 545
             +P  +T    F  GT AA S    GFG+++ T S  FG  A+  + TFG+   SQ + GF
Sbjct:  1979 SPLGSTGGKVFGEGT-AAASAGGFGFGSSSNTAS--FGTLASQNAPTFGS--LSQQTSGF 2033

Query:   546 GAPATTQTGLSFGAPA 561
             G P++  +G   G  A
Sbjct:  2034 GTPSSGFSGFGSGTGA 2049

GO:0005487 "nucleocytoplasmic transporter activity" evidence=IEA;ISO

GO:0006406 "mRNA export from nucleus" evidence=IEA;ISO

GO:0006606 "protein import into nucleus" evidence=IEA;ISO

GO:0006611 "protein export from nucleus" evidence=IEA;ISO

GO:0051726 "regulation of cell cycle" evidence=IEA;ISO

FB|FBgn0038722 Nup58 "Nucleoporin 58kD" [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 82/222 (36%), Positives = 102/222 (45%)

Query:   346 TPTTQATSAFGTPTQSTG-LSFGNFNSGLTFGAPSGGLNFGTPTTQA----TSAFGTPTQ 400
             TPTT   +A G  T +TG  +FG   +  T   PS G    TPT  A    TS F  P  
Sbjct:     3 TPTTN--NAIGGATAATGAFAFGARPATTTAPPPSFGAATSTPTFGAAPATTSLFAAPAA 60

Query:   401 STGLSFGPPFLFRSNETTATLDACVQSFGST-TPAQGFGSTAQTGLSFGTPSATQAXXXX 459
             +   +FG P    +        A    FG+T T A  FG+ A T  +FG P+AT A    
Sbjct:    61 TP--AFGAP----AATPAFGAPASTPGFGATSTAAPAFGTAAATP-AFGIPAATSAFGAP 113

Query:   460 XXXXXTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQS 519
                           FG P +T  P FGAPA T+    +FG PAAT+     FGA A+TQ+
Sbjct:   114 AATPAFGAAAATPAFGAPAAT--PAFGAPAATS----AFGAPAATT----AFGAPASTQA 163

Query:   520 VGFGAPATSQSV---TFG-AQPASQ------PSVGFGAPATT 551
               FGAPA +      TF  A PA+       P+ GFG  ATT
Sbjct:   164 SAFGAPAPAVGTVAPTFSFATPATSAPTTAPPAFGFGTTATT 205

GO:0005643 "nuclear pore" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

DICTYBASE|DDB_G0289701 DDB_G0289701 "ezrin/radixin/moesin C-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 235 (87.8 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 102/322 (31%), Positives = 129/322 (40%)

Query:   265 GFGSSAFGTPSAP--TPAFGSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSGLS 322
             G G S FG   AP  +  FGS +                                    S
Sbjct:  1386 GGGGSVFGAKPAPQTSSVFGSTSSPSTTTSAFGSTSTTPSVFGNTSAFGGGGSTTTPTTS 1445

Query:   323 -FNSPSTTQS-GLT--FGAPSGGLNFGTPTTQATSAFG---TPTQSTGLSFGNFNSGLTF 375
              F S STT + G T  FG+      FG+  T  TSAFG   TP      +FG+  +   F
Sbjct:  1446 AFGSSSTTPAFGGTPAFGSAPTTSAFGSAPTTTTSAFGSSSTPAFGGTSAFGSAPTTSAF 1505

Query:   376 GA-PSGGLNFGTPTTQATSAFG-TPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTP 433
             G+ P+ G  FG+  T  TSAFG TP  S   S      F S  TT        +FGST  
Sbjct:  1506 GSTPATGA-FGSAPT--TSAFGSTPATSAFGSTPTTGAFGSTPTTG-------AFGSTPT 1555

Query:   434 AQGFGSTAQTGLSFGTPSATQAXXXXXXXXXTAPQTGGLNFGTPT-----STQQPLFGAP 488
                FGST  TG +FG+   T A         T P T     G PT     S+  P FG+ 
Sbjct:  1556 TSAFGSTPTTG-AFGSTPTTSAFGSTSAFGST-PTTSAFG-GAPTTNAFGSSSTPAFGST 1612

Query:   489 ATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGA-PATSQSVTFGAQPASQPSVG--- 544
              TT+  G S  TPA     +  FG A TT + G  + PA   +  FG+ P +    G   
Sbjct:  1613 PTTSAFGSS-STPAFGGTSA--FGGAPTTSAFGSSSTPAFGGTSAFGSTPTTSAFGGGSV 1669

Query:   545 FGAPATTQTGLSFGAPATSQPA 566
             FG+ ++  T   FG+   S  A
Sbjct:  1670 FGSTSSQPTSSVFGSQFGSNSA 1691

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0291390 nup98 "putative nucleoporin 98" [Dictyostelium discoideum (taxid:44689)]

 Score = 228 (85.3 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 104/269 (38%), Positives = 125/269 (46%)

Query:   318 QSGLSFNSPSTTQSGL-TFGAP------SGGLNFGTPTTQATSA---FGT-PTQSTGLSF 366
             Q+   F  P  T +G   FGA       +GG  FG   TQ TS    FGT PT  TGL  
Sbjct:   410 QTSTPFGQPQQTNTGSGLFGAQQTQQTNTGGGLFGAQPTQQTSGGGLFGTQPTSGTGL-- 467

Query:   367 GNFNSGLTFGAPSGGLNFGT--PTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDAC 424
               F +  T G    GL FGT  PT+Q T  FGT TQ T    G   LF ++ T+ T    
Sbjct:   468 --FGTSPTAGGT--GL-FGTTQPTSQGTGLFGT-TQPTTQGTG---LFGTSPTSGT---- 514

Query:   425 VQSFGSTTPAQG---FGSTAQTGLS-FGT---PSATQAXXXXXXXXXT-APQTG-GLNFG 475
                FGST P  G   FGST  +G   FG+   P   Q+         T A  TG GL FG
Sbjct:   515 -GLFGST-PTSGTGLFGSTPTSGTGLFGSAQPPQNQQSQTSLFGNTGTGATNTGTGL-FG 571

Query:   476 TPTSTQQP---LFGAPATTAQTGFSFGTPAATSQPSVG-FGAAATTQSVG-FGAPATSQS 530
             +   +  P   LFG+   +  TG  FG+   T+QP+   FG   TT SVG  GA     S
Sbjct:   572 SAQPSSNPGGGLFGSAQPSTTTGGLFGSNQPTAQPTTSLFGN--TTGSVGGLGATPNITS 629

Query:   531 VTFGAQPASQPSVGFGAPA-TTQTGLSFG 558
               FG+ PA    + FG+   TTQT L FG
Sbjct:   630 GLFGSNPAQTGGL-FGSTQPTTQTSL-FG 656

GO:0006810 "transport" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0051028 "mRNA transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0274587 nup62 "nuclear pore protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 221 (82.9 bits), Expect = 4.9e-15, P = 4.9e-15
 Identities = 102/318 (32%), Positives = 124/318 (38%)

Query:   267 GSSAFGTPSAPTPAFGSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSGLSFNSP 326
             G   FG  S   PA G                                     G S  +P
Sbjct:    82 GGGLFGGSSTTAPATGGGGLFGGSTTTAPATTGGLFGGSSTTAPSTTTGGLFGGSSTTTP 141

Query:   327 STTQSGLTFG-----APS---GGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAP 378
             S T +G  FG     APS   GGL FG  TT AT+A    T +TG  FG   S  T    
Sbjct:   142 SITTTGGLFGGASTTAPSTTTGGL-FGA-TTPATTA----TTTTGGLFGG--STTTPSLT 193

Query:   379 SGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFG 438
             SGG  FG  T  AT+   T +    L+ G   LF  + TT +L +    FG+TTPA    
Sbjct:   194 SGGGLFGATTPAATTTT-TSSAIPSLTSGGG-LFGGSTTTPSLTSG-GLFGATTPAATTT 250

Query:   439 STAQT-----GLSFG--TPSATQAXXXXXXXXXTAPQTGGLNFGTPTSTQQPLFGA--PA 489
             ++  T     G  FG  TPS T           T P T      TP++T   LFGA  PA
Sbjct:   251 TSTTTPSLTSGGLFGATTPSTTGGLFGASTTTTTTPSTTSTT--TPSTTTGGLFGATTPA 308

Query:   490 TTAQTGFSFGTPAATSQPSVG-FGAAATTQSVGFGAPATSQSV--TFGAQP--ASQPSVG 544
             TT  +G  FG    T   + G FG + TT S       T+ +    FGA    A+ PS  
Sbjct:   309 TTTTSGGLFGASTTTPSTTGGLFGVSTTTPSTTSATTPTTTTTGGLFGAATTSATTPSTT 368

Query:   545 FGAPATTQTGLSFGAPAT 562
                  TT T   FG+  T
Sbjct:   369 TTTTTTTPTTGLFGSSTT 386

GO:0017056 "structural constituent of nuclear pore" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA;ISS

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0006405 "RNA export from nucleus" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2012788 AT1G10390 "AT1G10390" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 104/319 (32%), Positives = 132/319 (41%)

Query:   268 SSAFGTPSAPTPAFGSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSGLSFNSPS 327
             +++   P AP   FG+ A                                  G S +SP+
Sbjct:    28 NTSSNNPFAPATPFGTSAPFAAQSGSSIFGSTSTGVFGAPQTSSPFASTPTFGAS-SSPA 86

Query:   328 TTQSGLTFGA-----PSGGLN-FGT-P---TTQATSAFGTPTQSTGLSFGN--FNSGLTF 375
                S   FGA     P GG + FG  P   +T  ++ FG  TQ +  +FGN  F S   F
Sbjct:    87 FGNSTPAFGASPASSPFGGSSGFGQKPLGFSTPQSNPFGNSTQQSQPAFGNTSFGSSTPF 146

Query:   376 GAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGST-TPA 434
             GA +    FG P+T +  A  TP  S G S  P F   +  T A   +   SFG+T TPA
Sbjct:   147 GATNTPA-FGAPSTPSFGATSTP--SFGASSTPAF--GATNTPAFGASNSPSFGATNTPA 201

Query:   435 QG------FGSTAQT--GLSFGTPSATQAXXXXXXXXXTAPQTGGLNFGTPT--STQQPL 484
              G      FGST  T     FG+  A  A           P  G    GTP   ++  P 
Sbjct:   202 FGASPTPAFGSTGTTFGNTGFGSGGAFGASNTPAFGASGTPAFGAS--GTPAFGASSTPA 259

Query:   485 FGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGA-PATSQSVT-FGAQP-ASQP 541
             FGA +T A  G S  TPA     +  FGA+  T S  FG+ PA  QS + FG+    S P
Sbjct:   260 FGASSTPA-FGAS-STPAFGGSSTPSFGAS-NTSSFSFGSSPAFGQSTSAFGSSAFGSTP 316

Query:   542 SVGFGAPATTQT--GLSFG 558
             S   GA A+T T  G  FG
Sbjct:   317 SPFGGAQASTPTFGGSGFG 335

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005643 "nuclear pore" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

UNIPROTKB|F1NFA8 NUP62 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 214 (80.4 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 82/248 (33%), Positives = 106/248 (42%)

Query:   329 TQSGLTFG-APSGG-LNFGTPTTQATSAFGTPTQSTGLSFGNF-NSGLTFGAPSGGLNFG 385
             T S   F  AP+GG  +F TP T A++     T +TG SF    +SG TFG  +      
Sbjct:     1 TMSQFNFSSAPAGGGFSFSTPKTAAST-----TAATGFSFTPAPSSGFTFGGAAPTPASS 55

Query:   386 TPTTQATSAFGTPTQS---TGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFG--ST 440
              P T  +  F TP  S   T  SFG P    +  TTA   A V   G   P   FG  ST
Sbjct:    56 QPVTPFS--FSTPASSALPTAFSFGTP----ATATTAAPAASVFPLGGNAPKLNFGGTST 109

Query:   441 AQ-TGLSFGTPSATQAXXXXXXXXXTAPQTGGLNFGTPTSTQQPLFGA-PATTAQTGFSF 498
              Q TG++ G    T A          AP   G  FGT  +T      A P TT   GF+F
Sbjct:   110 TQATGITGGFGFGTSAPTSVPSSQAAAPS--GFMFGTAATTTTTTTAAQPGTTG--GFTF 165

Query:   499 GTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGFGAPATTQ---TGL 555
              +   T   + GF   AT+ +     P     +TFGA PA+  +      +TTQ   T  
Sbjct:   166 SSGTTTQAGTTGFNIGATSTAAPQAVPT---GLTFGAAPAAAATTTASLGSTTQPAATPF 222

Query:   556 SFGAPATS 563
             S G  +++
Sbjct:   223 SLGGQSSA 230

GO:0005643 "nuclear pore" evidence=IEA

GO:0017056 "structural constituent of nuclear pore" evidence=IEA

WB|WBGene00003797 npp-11 [Caenorhabditis elegans (taxid:6239)]

 Score = 207 (77.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 104/281 (37%), Positives = 128/281 (45%)

Query:   319 SGLSFNS-PSTT-QSGLTFGA------PSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFN 370
             SGL  NS P+ T  SG  FGA      PSGGL FG+ T  AT+A  T T ++GL FG   
Sbjct:   230 SGLFGNSAPAATASSGGLFGAAPKPAAPSGGL-FGS-TAPATTA-ATTTATSGL-FGAPT 285

Query:   371 SGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGPPF-LF--RSNETTA-----TLD 422
             S  +    +GGL FG  T  A +  G  +     +  P   LF   S  TTA     T  
Sbjct:   286 SAPSSAPATGGL-FGASTAPAAATGGLFSIGAASASTPSVGLFGNSSASTTAAAAPATAP 344

Query:   423 ACVQS---FGSTTPAQGFGSTAQTGLSFGTPSATQAXXXXXXXXXTAPQTGGLNFGTPTS 479
             A   +   FG+TT A    +++ TG  FG+ +A  A         + P TGGL FG+ T 
Sbjct:   345 AAASTGGLFGATTAAAAAPTSSTTGGLFGSTAAAPAA--------SLP-TGGL-FGSSTP 394

Query:   480 TQQPLFGAPATTAQTGFSFGTPAATSQPSVG--FGAAATTQSVGFGAPATSQSVTFGAQ- 536
              + P   AP  TA   F   +   TS P+ G  FG A  T +    APA S    FGA  
Sbjct:   395 AKTP--AAP--TAGL-FGASSTTTTSAPATGSLFGTAPATTTATSAAPAASTGGLFGASS 449

Query:   537 ---PASQPSVG--FGAPATTQ------TGLSFGAPATSQPA 566
                PAS    G  FGA  TT       TG  FGA  T+ PA
Sbjct:   450 TTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPA 490

GO:0005643 "nuclear pore" evidence=IEA

GO:0017056 "structural constituent of nuclear pore" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0006997 "nucleus organization" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	614
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.001

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 486 GAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPATSQSVTFGAQPASQPSVGF 545
           G     A T  S  T ++   PS    +AA        +  T+QS T     A   S   
Sbjct: 297 GTVPVAAVTPSSAVTQSSAITPS----SAAIPSPAVIPSSVTTQSATTTQASAVALSSAG 352

Query: 546 GAPATTQTGLSFGAPATSQPALSFGSSATGQAAGFSFGSSAPASSQPSLSFGAA 599
             P+      +   PA     +     +T +    S G+    ++ P+ S  AA
Sbjct: 353 VLPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAA 406

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	614
KOG3091|consensus	508		96.6
KOG3091|consensus	508		96.1
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	92.36
PF13634	113	Nucleoporin_FG: Nucleoporin FG repeat region	82.27

>KOG3091|consensus

Probab=96.60  E-value=0.032  Score=61.85  Aligned_cols=12  Identities=50%  Similarity=0.847  Sum_probs=5.3

Q ss_pred             CCcccccCCCCC
Q psy13798        229 SGQGFGGFGTGT  240 (614)
Q Consensus       229 ~g~~fgGFGs~~  240 (614)
                      ..+++++||.++
T Consensus        18 ~~~~~~~~gt~t   29 (508)
T KOG3091|consen   18 ASGGQGNFGTST   29 (508)
T ss_pred             cccccCCCCCcc
Confidence            333444444444

>KOG3091|consensus

Probab=96.10  E-value=0.073  Score=59.16  Aligned_cols=56  Identities=43%  Similarity=0.720  Sum_probs=35.1

Q ss_pred             CCCCCCCCCcCCCCCCCCcccccccCCcccccCCCCCCCCCCCCCCCCCccccccccccccCCc
Q psy13798        116 FGSTATQPAFGAGTTTSGQGFGGFGSATARLCNSIGSPAFGSTNTFGTPTTQQSTGFGGFGTST  179 (614)
Q Consensus       116 fgs~~~~~~fg~~~~t~g~~fggfg~~~~~~~~s~~~~~fg~~~~fgs~~~~q~tg~g~fg~~~  179 (614)
                      ||+......|-++.+-..+++|+||.++.++  +.+--+||+.|.+|+-++      ++||.+.
T Consensus         2 FG~~~~~s~~~~~st~~~~~~~~~gt~t~ts--a~~g~~fgs~p~~~taTt------~~fG~~~   57 (508)
T KOG3091|consen    2 FGASGSTSGFAAGSTGASGGQGNFGTSTTTS--ASGGGAFGSQPTTGTATT------GLFGANQ   57 (508)
T ss_pred             CCCCCCcCCCCCccCCcccccCCCCCccccc--cccccccccCCCCCCccc------ccccccc
Confidence            6666666667434445566777888888774  334447788887776544      4566555

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=92.36  E-value=1.1  Score=40.49  Aligned_cols=6  Identities=50%  Similarity=0.589  Sum_probs=3.0

Q ss_pred             cccCCC
Q psy13798        425 VQSFGS  430 (614)
Q Consensus       425 GFsFGa  430 (614)
                      +.+||.
T Consensus        23 ~~lFG~   28 (113)
T PF13634_consen   23 GSLFGS   28 (113)
T ss_pred             CCCCCC
Confidence            445554

>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region

Probab=82.27  E-value=14  Score=33.57  Aligned_cols=10  Identities=30%  Similarity=0.325  Sum_probs=5.3

Q ss_pred             cCCCcccCCC
Q psy13798        421 LDACVQSFGS  430 (614)
Q Consensus       421 ~a~gGFsFGa  430 (614)
                      ....+.+||.
T Consensus        35 ~~~~~~LFG~   44 (113)
T PF13634_consen   35 STSSGSLFGS   44 (113)
T ss_pred             CCCCCccCCC
Confidence            3345566664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	614
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-08
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-05
3t98_B	93	Nucleoporin NUP58/NUP45; NUP62 complex, nuclear im	1e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	9e-05
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	1e-04

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 15/252 (5%)

Query: 220  PAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGSSAFG-TPSAPT 278
            P   +G+  +  G  GF           TS  G +G   T+   PGFG S+ G +P++PT
Sbjct: 1494 PLVDSGSNDAMAG--GFTAYGGADYGEATSPFGAYGEAPTS---PGFGVSSPGFSPTSPT 1548

Query: 279  PAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLTFGAP 338
             +  SPA+  T+   +PT+   +      + T  S        S  SPS + +  ++   
Sbjct: 1549 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1608

Query: 339  SGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAP--SGGLNFGTPTTQATSAFG 396
            S   +  +P+   TS   +PT  +        S  +      S   +  +P    TS   
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY 1668

Query: 397  TPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQAS 456
            +PT  +     P +    + T+ +      ++  T+P+    S    G S G+P+ +   
Sbjct: 1669 SPTSPSYSPTSPSY----SPTSPSYSPTSPNYSPTSPSY---SPTSPGYSPGSPAYSPKQ 1721

Query: 457  GGFSFGGGTAPQ 468
                       +
Sbjct: 1722 DEQKHNENENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 51/268 (19%), Positives = 88/268 (32%), Gaps = 19/268 (7%)

Query: 217  ATQPAFGAGTTTSGQGFGGFGTGTATFGS-TNTSTGGLFGSGGTTTAQPGFGSSAFGTPS 275
                     +  SG              S    S      +GG T         A     
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFG 1524

Query: 276  APTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLTF 335
            A   A  SP FG ++   +PT+   +      + T  S        S  SPS + +  ++
Sbjct: 1525 AYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584

Query: 336  GAPSGGLNFGTPTTQATSAFGTPTQSTG--LSFGNFNSGLTFGAPSGGLNFGTPTTQATS 393
               S   +  +P+   TS   +PT  +    S     +  ++   S   +  +P+   TS
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644

Query: 394  AFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSAT 453
               +PT S   S   P     + T+ +      S+  T+P+    S + +  S   P+ +
Sbjct: 1645 PSYSPT-SPSYSPTSPAY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS---PNYS 1697

Query: 454  QASGGFSFGGGTAPQTGGLNFGTPTSTQ 481
              S  +S    T+P        +P S  
Sbjct: 1698 PTSPSYS---PTSPG------YSPGSPA 1716

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 49/306 (16%), Positives = 92/306 (30%), Gaps = 40/306 (13%)

Query: 232  GFGGFGTGTATFGSTNT-STGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGSPAFGSTN 290
                   G  T  S  +                P   S +    +    A+G   +G   
Sbjct: 1461 EIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEAT 1520

Query: 291  TFGTPTTQQ--STGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLTFGAPSGGLNFGTPT 348
            +      +   S GFG               G S  SP+ + +   +   S   +  +P+
Sbjct: 1521 SPFGAYGEAPTSPGFGVSS-----------PGFSPTSPTYSPTSPAYSPTSPSYSPTSPS 1569

Query: 349  TQATSAFGTPTQSTGLSFGNFNSGL--TFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSF 406
               TS   +PT  +        S    ++   S   +  +P+   TS   +PT       
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----- 1624

Query: 407  GPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGGGTA 466
                    + T+ +      S+  T+P+    S      S  +P+ +  S  +S    T+
Sbjct: 1625 ------SYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPAYSPTSPSYS---PTS 1672

Query: 467  PQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQSVGFGAPA 526
            P        +PTS          +     +S  +P + S  S G+   +   S       
Sbjct: 1673 PS------YSPTSPSYSPTSPSYSPTSPNYSPTSP-SYSPTSPGYSPGSPAYSPKQDEQK 1725

Query: 527  TSQSVT 532
             +++  
Sbjct: 1726 HNENEN 1731

>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A Length = 93

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 41 ELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDST 86
          +L   M++++   V++A  LQS    V+ LKE++L  R+ +L D+ 
Sbjct: 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDAG 93

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 51/252 (20%), Positives = 88/252 (34%), Gaps = 14/252 (5%)

Query: 209  AGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPGFGS 268
            A FS        + G          G             TS      S G     P +  
Sbjct: 1503 AAFS--PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSP 1560

Query: 269  SAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPST 328
            S+ G  ++P     SP++  T+   +PT+   +      + T  S        S  SPS 
Sbjct: 1561 SSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSY 1620

Query: 329  TQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTPT 388
            + +  ++   S   +  +P+   TS   +PT S   S     +  ++   S   +  +P+
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYS----PTSPSYSPTSPSYSPTSPS 1675

Query: 389  TQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFG 448
               TS   +PT S   S   P     + T+ +      S+  T+P+    S + +  S  
Sbjct: 1676 YSPTSPSYSPT-SPSYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-- 1729

Query: 449  TPSATQASGGFS 460
             PS +  S  +S
Sbjct: 1730 -PSYSPTSPSYS 1740

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 54/304 (17%), Positives = 101/304 (33%), Gaps = 25/304 (8%)

Query: 200  PQQHSQHLWAGFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGT 259
            P      +          T P   +    SG          +      +     FG  G 
Sbjct: 1466 PTLAGSGMGTSQLPEGAGT-PYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGL 1524

Query: 260  TTAQPGFGSSAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQS 319
              A   +        ++P  +  SP +G T+   +P++   +    +  S+    PT   
Sbjct: 1525 LGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPT--- 1581

Query: 320  GLSFNSPSTTQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPS 379
                 SPS + +  ++   S   +  +P+  ATS   +PT S   S     +  ++   S
Sbjct: 1582 -----SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPT-SPSYS----PTSPSYSPTS 1631

Query: 380  GGLNFGTPTTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGS 439
               +  +P+   TS   +PT S   S   P     + T+ +      S+  T+P+    S
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPT-SPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1687

Query: 440  TAQTGLS-FGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSF 498
             + +  S   +P++   S        T+P         PTS          +     +S 
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPTSPSYSP 1741

Query: 499  GTPA 502
             +P+
Sbjct: 1742 TSPS 1745

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 44.7 bits (105), Expect = 9e-05
 Identities = 50/296 (16%), Positives = 86/296 (29%), Gaps = 16/296 (5%)

Query: 225  GTTTSGQGFGGFGTGTAT-FGSTNTSTGGLFGSGGTTTAQPGFGSSAFGTPSAPTPAFGS 283
                SG G      G  T +  +     G  GS       P     + G           
Sbjct: 1467 TLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLG 1526

Query: 284  PAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPSTTQSGLTFGAPSGGLN 343
             A           T   +     G        +  S     SP+   S  ++   S    
Sbjct: 1527 AASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTS---- 1582

Query: 344  FGTPTTQATSAFGTPTQSTGLSFGNFNSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTG 403
               P+   TS   +PT S   S  + +   T  + S      +PT+ + S        T 
Sbjct: 1583 ---PSYSPTSPSYSPT-SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1638

Query: 404  LSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGSTAQTGLSFGTPSATQASGGFSFGG 463
             S+ P     S   + T  +   +  S +P     S      S  +PS +  S  +S   
Sbjct: 1639 PSYSPT----SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--- 1691

Query: 464  GTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPAATSQPSVGFGAAATTQS 519
             T+P     +     ++      +P+ +  +     T  + S  S  +   + + S
Sbjct: 1692 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1747

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 49/308 (15%), Positives = 89/308 (28%), Gaps = 9/308 (2%)

Query: 210 GFSFGSTATQPAFGAGTTTSGQGFGGFGTGTATFGSTNTSTGGLFGSGGTTTAQPG-FGS 268
               GST+        +  +    G + +G++  GST     G  G+GGT T +PG  G 
Sbjct: 250 ITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGP 309

Query: 269 SAFGTPSAPTPAFGSPAFGSTNTFGTPTTQQSTGFGGFGTSTFGSQPTQQSGLSFNSPST 328
            + G+ ++ +   GS    +  +    +T  +   G     + G   ++ S         
Sbjct: 310 GSTGSWNSGSSGTGSTGNQNPGSPRPGST-GTWNPGSSERGSAGHWTSESSVSGSTGQWH 368

Query: 329 TQSGLTFGAPSGGLNFGTPTTQATSAFGTPTQSTGLS-FGNFNSGLTFGAPSGGLNFGTP 387
           ++SG +F   S G     P       F   + +        +++     +          
Sbjct: 369 SESG-SFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGK 427

Query: 388 TTQATSAFGTPTQSTGLSFGPPFLFRSNETTATLDACVQSFGSTTPAQGFGST-----AQ 442
               + +  T  +S   +     +        T +      GS  P      T       
Sbjct: 428 EKVTSGSTTTTRRSCSKTVTKTVIGPDGHKEVTKEVVTSEDGSDCPEAMDLGTLSGIGTL 487

Query: 443 TGLSFGTPSATQASGGFSFGGGTAPQTGGLNFGTPTSTQQPLFGAPATTAQTGFSFGTPA 502
            G     P         S G         +     + T+     +   T     S   P 
Sbjct: 488 DGFRHRHPDEAAFFDTASTGKTFPGFFSPMLGEFVSETESRGSESGIFTNTKESSSHHPG 547

Query: 503 ATSQPSVG 510
               PS G
Sbjct: 548 IAEFPSRG 555

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	614
3t98_B	93	Nucleoporin NUP58/NUP45; NUP62 complex, nuclear im	99.75
3mmy_B	56	Nuclear pore complex protein NUP98; mRNA export, n	97.23

>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A

Probab=99.75  E-value=4.5e-19  Score=153.33  Aligned_cols=50  Identities=30%  Similarity=0.458  Sum_probs=46.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHhhhhhhhhcCC
Q psy13798         36 SPLSTELYQTMRRVHDAVVSVAGSLQSTQPEVQYLKERHLQLRQTYLKDS   85 (614)
Q Consensus        36 ~~~pqdL~~~m~klhetfValAg~lq~~H~~V~~~KeqyL~~Rr~~l~D~   85 (614)
                      +-+||||.++|+++||+|||||+|||+||++||.+||+||+|||++|||.
T Consensus        43 ~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d~   92 (93)
T 3t98_B           43 HITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGDA   92 (93)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            35799999999999999999999999999999999999999999999996

>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.23  E-value=3.3e-05  Score=62.14  Aligned_cols=43  Identities=12%  Similarity=0.064  Sum_probs=33.7

Q ss_pred             cccCCcccCC----CCC---CCcccccccccCCCcccC--CcccCCCCCCcc
Q psy13798        301 TGFGGFGTST----FGS---QPTQQSGLSFNSPSTTQS--GLTFGAPSGGLN  343 (614)
Q Consensus       301 ~~fs~Fg~~~----FGs---~~nq~q~isf~~py~~~s--gf~fG~~s~Gfs  343 (614)
                      .+|.++.++|    .+.   ..+.||+|++|++|+++|  |||+-||.+|++
T Consensus         5 vkf~p~~~tdt~~~~g~~~~~~~~~qsIs~M~~Y~~~S~EELR~eDY~~grk   56 (56)
T 3mmy_B            5 IKFNPPTGTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK   56 (56)
T ss_dssp             SCCCCCEEEEEC-----CCEEEEEECCGGGSTTTTTSCHHHHHHHHHHTTCC
T ss_pred             ccccccccccchhhcCCCCccceeEEEEecchhhhcCCHHHHHHHHHHccCC
Confidence            3677777664    333   356899999999999999  999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00