Psyllid ID: psy13817

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHcccEEEcccEEEEccccccccccEEEEEcccccccHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEcccEEEEccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccHHHHHHHHHccccEEccccEEEEccccccccccEEEEEcccccccccccccccccccHHccccccccccccccccccccEcccccccccccccccEEccccccccHHHHHHHHHcccccccccEEEEEccccccccccEEEEEc
Coil and Loop (DISEMBL)
kfekddyrpvrfvdkekhvNTQFAIDLiaevppkpckervvwcdggsgptghpkvyinlRPEISYIMSLLSLLKQTRVNRLIVPLTrtlakdvapfndiethtgqkfekddyrpvrfvdkekhvNTQFAIDLiaevppkpckervvwcdggsgptghpkvyinl
Flexible Loop (DISEMBL)
kfekddyrpvrfvdkekhvnTQFAidliaevppkpCKERVVWCdggsgptghPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTrtlakdvapfndiethtgqkfekddyRPVRFVDKEKHVNTQFaidliaevppkpCKERVVWcdggsgptghpkvyinl
Low Complexity Region (SEG)
KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL
Disordered region (IsUnstruct)
*********VRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGG*************
Disordered Region (DISOPRED)
**E*DDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTR***************************QKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL
Disordered Region (DISEMBL)
KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL
Disordered Region (DISPRO)
*FEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q0MQH6	124	NADH dehydrogenase [ubiqu	N/A	N/A	0.621	0.822	0.456	5e-19
Q0MQH7	124	NADH dehydrogenase [ubiqu	yes	N/A	0.621	0.822	0.456	5e-19
O75380	124	NADH dehydrogenase [ubiqu	yes	N/A	0.621	0.822	0.456	5e-19
P52503	116	NADH dehydrogenase [ubiqu	yes	N/A	0.481	0.681	0.531	8e-19
Q4R5X8	124	NADH dehydrogenase [ubiqu	N/A	N/A	0.481	0.637	0.544	1e-18
P23934	124	NADH dehydrogenase [ubiqu	yes	N/A	0.621	0.822	0.436	1e-18
Q0MQH5	124	NADH dehydrogenase [ubiqu	N/A	N/A	0.621	0.822	0.446	2e-18
P52504	116	NADH dehydrogenase [ubiqu	no	N/A	0.390	0.551	0.593	5e-17
Q19724	140	Probable NADH dehydrogena	yes	N/A	0.487	0.571	0.475	1e-12
Q5AUI1	213	Lactobacillus shifted pro	yes	N/A	0.243	0.187	0.512	7e-05

>sp|Q0MQH6|NDUS6_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS6 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 63  ISYIMSLLSLLKQTRVNRLIVPL-TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
           ++  M+   LL +       +PL  R     V+P  +  THTGQ ++  DYR +RFV ++
Sbjct: 1   MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60

Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           K VN  FAIDLIAE P    + RV+ CDGG G  GHPKVYINL
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Gorilla gorilla gorilla (taxid: 9595)

>sp|Q0MQH7|NDUS6_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pan troglodytes GN=NDUFS6 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 63  ISYIMSLLSLLKQTRVNRLIVPL-TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
           ++  M+   LL +       +PL  R     V+P  +  THTGQ ++  DYR +RFV ++
Sbjct: 1   MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60

Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           K VN  FAIDLIAE P    + RV+ CDGG G  GHPKVYINL
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|O75380|NDUS6_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Homo sapiens GN=NDUFS6 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 63  ISYIMSLLSLLKQTRVNRLIVPL-TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
           ++  M+   LL +       +PL  R     V+P  +  THTGQ ++  DYR +RFV ++
Sbjct: 1   MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60

Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           K VN  FAIDLIAE P    + RV+ CDGG G  GHPKVYINL
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|P52503|NDUS6_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Mus musculus GN=Ndufs6 PE=1 SV=2

 Score = 92.8 bits (229), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 53/79 (67%)

Query: 86  TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERV 145
            R     V+P  +  THTGQ +++ DYR VRFVD++K VN  FAIDLIA+ P    + R+
Sbjct: 17  ARGFGVQVSPSGEKITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVNEVEHRI 76

Query: 146 VWCDGGSGPTGHPKVYINL 164
           + CDGG G  GHPKVYINL
Sbjct: 77  IACDGGGGALGHPKVYINL 95

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q4R5X8|NDUS6_MACFA NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Macaca fascicularis GN=NDUFS6 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 52/79 (65%)

Query: 86  TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERV 145
            R     V+P  +  THTGQ ++  DYR +RFVD++K VN  FAIDLIAE P    + RV
Sbjct: 25  ARCFGVRVSPTGEKITHTGQVYDDKDYRRIRFVDRQKEVNENFAIDLIAEQPVSEVQTRV 84

Query: 146 VWCDGGSGPTGHPKVYINL 164
           + CDGG G  GHPKVYINL
Sbjct: 85  IACDGGGGALGHPKVYINL 103

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Macaca fascicularis (taxid: 9541)

>sp|P23934|NDUS6_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Bos taurus GN=NDUFS6 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 63  ISYIMSLLSLL-KQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
           ++ +++ L  L +   V R +    R      +P  +  THTGQ ++  DYR VRFV ++
Sbjct: 1   MAAVLTFLRFLGRGGAVTRGLPGGARCFGVRTSPTGEKVTHTGQVYDDGDYRKVRFVGRQ 60

Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           K VN  FAIDLIAE P      RV+ CDGG G  GHP+VYINL
Sbjct: 61  KEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINL 103

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q0MQH5|NDUS6_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Pongo pygmaeus GN=NDUFS6 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

Query: 63  ISYIMSLLSLLKQ-TRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKE 121
           ++  M+   LL +     R +    R     V+P  +  THTGQ ++  DYR +RFV ++
Sbjct: 1   MAAAMTFYRLLNRWGEAARSLRLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60

Query: 122 KHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           K VN  FAIDLIAE P    + RV+ CDGG G  GHPKVYINL
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P52504|NDUS6_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Rattus norvegicus GN=Ndufs6 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query: 101 THTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKV 160
           THTGQ  +  DYR +RFVD++K VN  FAIDLIA+ P      R++ CDGG G  GHPKV
Sbjct: 32  THTGQVSDGKDYRGIRFVDRQKEVNENFAIDLIAQQPVNEVDRRIIACDGGGGALGHPKV 91

Query: 161 YINL 164
           YINL
Sbjct: 92  YINL 95

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Rattus norvegicus (taxid: 10116)

>sp|Q19724|NDUS6_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Caenorhabditis elegans GN=nduf-6 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 84  PLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKE 143
           P    + K+ A F+ + THTGQ +++ DYR  RF   +K VN   A+ LI + PP+ C +
Sbjct: 27  PTPNQITKNNAQFDKV-THTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGD 85

Query: 144 -RVVWCDGGSGPTGHPKVYINL 164
            RVV+CDGG    GHPKVYINL
Sbjct: 86  KRVVFCDGGHPALGHPKVYINL 107

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Caenorhabditis elegans (taxid: 6239)

>sp|Q5AUI1|LBSA_EMENI Lactobacillus shifted protein OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=lbsA PE=1 SV=1

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 1/41 (2%)

Query: 24  AIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL-RPEI 63
           AI+LI + P +  K+++V CDGG GP GHP+++IN  +PEI
Sbjct: 119 AIELIHKQPVRWVKDKIVSCDGGGGPLGHPRIFINTDKPEI 159

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
193688233	123	PREDICTED: probable NADH dehydrogenase [	0.621	0.829	0.558	2e-24
239788117	123	ACYPI000747 [Acyrthosiphon pisum]	0.621	0.829	0.549	7e-24
91083249	125	PREDICTED: similar to CG8680 CG8680-PA [	0.390	0.512	0.828	2e-23
390332757	127	PREDICTED: NADH dehydrogenase [ubiquinon	0.609	0.787	0.452	3e-23
332375564	123	unknown [Dendroctonus ponderosae]	0.585	0.780	0.54	2e-21
307187709	127	NADH dehydrogenase [ubiquinone] iron-sul	0.560	0.724	0.490	1e-20
357612416	211	hypothetical protein KGM_08437 [Danaus p	0.670	0.521	0.442	2e-20
241048562	125	NADH ubiquinone oxidoreductase subunit,	0.615	0.808	0.519	5e-20
195117608	124	GI17860 [Drosophila mojavensis] gi|19391	0.585	0.774	0.524	5e-20
260908491	123	NADH ubiquinone oxidoreductase subunit [	0.481	0.642	0.594	3e-19

>gi|193688233|ref|XP_001945136.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328700596|ref|XP_003241318.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like isoform 2 [Acyrthosiphon pisum]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 68/102 (66%)

Query: 63  ISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEK 122
           ++  +S L +       R   P     AK      ++ETHTGQK+EKDDYR  RF+DK+K
Sbjct: 1   MALTVSGLKIAAVGLTQRACRPTLLQAAKYSWEPKEVETHTGQKWEKDDYRLARFIDKKK 60

Query: 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
            VN  FAIDLI +VPPKPC ERVV+CDGG GP GHPKVYINL
Sbjct: 61  EVNQSFAIDLIKQVPPKPCTERVVYCDGGGGPLGHPKVYINL 102

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|239788117|dbj|BAH70753.1| ACYPI000747 [Acyrthosiphon pisum]

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/102 (54%), Positives = 67/102 (65%)

Query: 63  ISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEK 122
           ++  +S L +       R   P     AK      ++E HTGQK+EKDDYR  RF+DK+K
Sbjct: 1   MALTVSGLKIAAVGLTQRACRPTLLQAAKYSWEPKEVEAHTGQKWEKDDYRLARFIDKKK 60

Query: 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
            VN  FAIDLI +VPPKPC ERVV+CDGG GP GHPKVYINL
Sbjct: 61  EVNQSFAIDLIKQVPPKPCTERVVYCDGGGGPLGHPKVYINL 102

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083249|ref|XP_974018.1| PREDICTED: similar to CG8680 CG8680-PA [Tribolium castaneum] gi|270008233|gb|EFA04681.1| hypothetical protein TcasGA2_TC014412 [Tribolium castaneum]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 55/64 (85%)

Query: 101 THTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKV 160
           THTGQK+E DDYR  RFV + KHVN  FAIDLIAEVPPK CKERVVWCDGG GPTGHPKV
Sbjct: 41  THTGQKWEPDDYRLSRFVGRPKHVNPNFAIDLIAEVPPKACKERVVWCDGGGGPTGHPKV 100

Query: 161 YINL 164
           YINL
Sbjct: 101 YINL 104

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390332757|ref|XP_001187797.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Strongylocentrotus purpuratus]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 72/146 (49%), Gaps = 46/146 (31%)

Query: 19  VNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLLKQTRV 78
           VN QFAIDL+ E PP     R V CDGG GP GHPKVYINL                   
Sbjct: 7   VNEQFAIDLVHEEPPIEINGRSVHCDGGGGPLGHPKVYINL------------------- 47

Query: 79  NRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPP 138
                                       +++ DYR VRFVD+EK VN QFAIDL+ E PP
Sbjct: 48  ---------------------------VYDEGDYRKVRFVDREKEVNEQFAIDLVHEEPP 80

Query: 139 KPCKERVVWCDGGSGPTGHPKVYINL 164
                R V CDGG GP GHPKVYINL
Sbjct: 81  IEINGRSVHCDGGGGPLGHPKVYINL 106

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

>gi|332375564|gb|AEE62923.1| unknown [Dendroctonus ponderosae]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/100 (54%), Positives = 66/100 (66%), Gaps = 4/100 (4%)

Query: 67  MSLLSLLKQTRVN--RLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHV 124
           ++L  L    R+N  RL+   TR  +       D ETHTGQKF+  DYR  RFVD+ K+V
Sbjct: 4   ITLSKLCHNVRINQSRLVTLCTRNASTSTP--QDQETHTGQKFDPKDYRLARFVDRPKNV 61

Query: 125 NTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           N  F+I LI E PPK C +RVV+CDGGSGP GHP+VYINL
Sbjct: 62  NPNFSIKLIEEAPPKSCNDRVVFCDGGSGPEGHPRVYINL 101

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187709|gb|EFN72681.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Camponotus floridanus]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 65/106 (61%), Gaps = 14/106 (13%)

Query: 73  LKQTRVNRLIVPLTRTLAKDVAPFNDIE--------------THTGQKFEKDDYRPVRFV 118
           +   RV+ L +P ++   +D +  N I               THTGQ FEKDDYR VRF+
Sbjct: 1   MATKRVSGLCIPFSKLYKRDASALNTITQRMYATVDEGDTQVTHTGQVFEKDDYRLVRFM 60

Query: 119 DKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           D+ K VN  + I+LI E+PP P KER+V CDGG GP GHPKVYINL
Sbjct: 61  DRPKEVNKNWGINLIDEIPPSPEKERIVACDGGGGPLGHPKVYINL 106

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|357612416|gb|EHJ67985.1| hypothetical protein KGM_08437 [Danaus plexippus]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 12/122 (9%)

Query: 55  VYINLRPEISYIMSLLS-------LLKQTRVNRLIVPL-TRTLAKDVAPFN----DIETH 102
           +  N +    YI  L S       ++  TR  + +  + +RT++  +        D+ TH
Sbjct: 69  ILTNYKKRKKYIWYLFSCTKLKFKMISATRARQFVGSVNSRTISLTIRCITNKTEDVTTH 128

Query: 103 TGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYI 162
           TGQK+E DDYR  RF    K VN  +A++LIA+VPPK   ERVVWCDGGSGP GHP+VYI
Sbjct: 129 TGQKWESDDYRLARFTLAPKQVNKNWAVNLIAQVPPKEVTERVVWCDGGSGPEGHPRVYI 188

Query: 163 NL 164
           NL
Sbjct: 189 NL 190

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241048562|ref|XP_002407295.1| NADH ubiquinone oxidoreductase subunit, putative [Ixodes scapularis] gi|215492175|gb|EEC01816.1| NADH ubiquinone oxidoreductase subunit, putative [Ixodes scapularis]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 63  ISYIMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEK 122
           +S  M   S L Q   N  I  L+ +L KD  P  D  THTGQ+++KDDYR  RFVD++K
Sbjct: 1   MSSSMRNTSKLLQLSRNLRISRLSSSLTKDWEP-KDPVTHTGQQWDKDDYRLARFVDRQK 59

Query: 123 HVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
            VN  FA+ LIAEVPPK  + R  WCDGG    GHP+V+INL
Sbjct: 60  QVNPNFAVKLIAEVPPKAVQGRTTWCDGGDPALGHPRVFINL 101

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195117608|ref|XP_002003339.1| GI17860 [Drosophila mojavensis] gi|193913914|gb|EDW12781.1| GI17860 [Drosophila mojavensis]

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 71/101 (70%), Gaps = 5/101 (4%)

Query: 66  IMSLLSLLKQTRVNRLIVPLTRTLAKDVAPFNDIE--THTGQKFEKDDYRPVRFVDKEKH 123
           +M+  S L +   N+L+ PL     +  +  +DIE  THTGQ F+KDDYR VRF + +++
Sbjct: 6   LMNRASSLGRCNQNKLM-PLASM--RWSSTRSDIEKVTHTGQVFDKDDYRNVRFTNAKRY 62

Query: 124 VNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           VN  + I LI E+PPK C+ERVV+CDGG+GP GHPKVYINL
Sbjct: 63  VNENWGIKLIDEIPPKECEERVVYCDGGNGPLGHPKVYINL 103

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260908491|gb|ACX53965.1| NADH ubiquinone oxidoreductase subunit [Rhipicephalus sanguineus]

 Score =  100 bits (248), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 55/79 (69%)

Query: 86  TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERV 145
           +  + KDV P  D  THTGQ ++KDDYR VRF++  K +N  FAI LIAEVPPK    R 
Sbjct: 21  SSNVVKDVEPPKDPVTHTGQHWDKDDYRLVRFMETPKQINPNFAIKLIAEVPPKXVNART 80

Query: 146 VWCDGGSGPTGHPKVYINL 164
            WCDGGSG  GHP+VYINL
Sbjct: 81  TWCDGGSGALGHPRVYINL 99

Source: Rhipicephalus sanguineus

Species: Rhipicephalus sanguineus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0031684	126	CG8680 [Drosophila melanogaste	0.408	0.531	0.666	6.3e-21
MGI|MGI:107932	116	Ndufs6 "NADH dehydrogenase (ub	0.512	0.724	0.517	1.1e-18
UNIPROTKB|O75380	124	NDUFS6 "NADH dehydrogenase [ub	0.597	0.790	0.474	2.8e-18
UNIPROTKB|E1BQN0	128	NDUFS6 "Uncharacterized protei	0.548	0.703	0.484	4.6e-18
UNIPROTKB|F1S031	123	NDUFS6 "Uncharacterized protei	0.597	0.796	0.454	2e-17
UNIPROTKB|P23934	124	NDUFS6 "NADH dehydrogenase [ub	0.432	0.572	0.563	4.1e-17
UNIPROTKB|A8YXY4	152	NDUFS6 "NADH dehydrogenase [ub	0.432	0.467	0.563	4.1e-17
RGD|3156	116	Ndufs6 "NADH dehydrogenase (ub	0.390	0.551	0.593	1.1e-16
ZFIN|ZDB-GENE-040912-86	129	ndufs6 "NADH dehydrogenase (ub	0.585	0.744	0.47	1.4e-16
WB|WBGene00009051	140	nduf-6 [Caenorhabditis elegans	0.487	0.571	0.475	1.8e-14

FB|FBgn0031684 CG8680 [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query:    98 DIE--THTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPT 155
             DIE  THTGQ F+K+DYR  RFV+ +++VN  + I LI EVPPK C ERVV+CDGG GP 
Sbjct:    35 DIEKVTHTGQVFDKEDYRNARFVNAKRYVNENWGIKLIEEVPPKECTERVVFCDGGDGPL 94

Query:   156 GHPKVYINL 164
             GHPKVYINL
Sbjct:    95 GHPKVYINL 103

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

MGI|MGI:107932 Ndufs6 "NADH dehydrogenase (ubiquinone) Fe-S protein 6" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 44/85 (51%), Positives = 56/85 (65%)

Query:    81 LIVP-LTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPK 139
             L +P   R     V+P  +  THTGQ +++ DYR VRFVD++K VN  FAIDLIA+ P  
Sbjct:    11 LTLPRAARGFGVQVSPSGEKITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVN 70

Query:   140 PCKERVVWCDGGSGPTGHPKVYINL 164
               + R++ CDGG G  GHPKVYINL
Sbjct:    71 EVEHRIIACDGGGGALGHPKVYINL 95

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0010259 "multicellular organismal aging" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0061458 "reproductive system development" evidence=IMP

GO:0070469 "respiratory chain" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IMP

GO:0072358 "cardiovascular system development" evidence=IMP

UNIPROTKB|O75380 NDUFS6 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 47/99 (47%), Positives = 59/99 (59%)

Query:    67 MSLLSLLKQTRVNRLIVPL-TRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVN 125
             M+   LL +       +PL  R     V+P  +  THTGQ ++  DYR +RFV ++K VN
Sbjct:     5 MTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQKEVN 64

Query:   126 TQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
               FAIDLIAE P    + RV+ CDGG G  GHPKVYINL
Sbjct:    65 ENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINL 103

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0009055 "electron carrier activity" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E1BQN0 NDUFS6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 46/95 (48%), Positives = 58/95 (61%)

Query:    70 LSLLKQTRVNRLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFA 129
             L+LL+Q     L     R      A   ++ THTGQ +++ DYR VRFV ++K VN  FA
Sbjct:    18 LALLRQAAAGSL-----RFYGVRAAATGELVTHTGQVYDEKDYRRVRFVGRQKEVNKNFA 72

Query:   130 IDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
             IDLIAE P    + R++ CDGG G  GHPKVYINL
Sbjct:    73 IDLIAEQPVSEVESRIISCDGGGGALGHPKVYINL 107

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|F1S031 NDUFS6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/99 (45%), Positives = 60/99 (60%)

Query:    67 MSLLSLLKQTRVN-RLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVN 125
             ++ L LL ++    R ++  +R      +P  +  THTGQ ++  DYR VRF D++K VN
Sbjct:     4 VTFLRLLGRSGAGARNLLGGSRCFGVRTSPTGEKVTHTGQAYDDGDYRRVRFSDRQKEVN 63

Query:   126 TQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
               FAIDLIAE P      RV+ CDGG G  GHP+VYINL
Sbjct:    64 ENFAIDLIAEQPVSEVGSRVISCDGGGGALGHPRVYINL 102

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|P23934 NDUFS6 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/71 (56%), Positives = 48/71 (67%)

Query:    94 APFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSG 153
             +P  +  THTGQ ++  DYR VRFV ++K VN  FAIDLIAE P      RV+ CDGG G
Sbjct:    33 SPTGEKVTHTGQVYDDGDYRKVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGG 92

Query:   154 PTGHPKVYINL 164
               GHP+VYINL
Sbjct:    93 ALGHPRVYINL 103

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

UNIPROTKB|A8YXY4 NDUFS6 "NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/71 (56%), Positives = 48/71 (67%)

Query:    94 APFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSG 153
             +P  +  THTGQ ++  DYR VRFV ++K VN  FAIDLIAE P      RV+ CDGG G
Sbjct:    33 SPTGEKVTHTGQVYDDGDYRKVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGG 92

Query:   154 PTGHPKVYINL 164
               GHP+VYINL
Sbjct:    93 ALGHPRVYINL 103

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

RGD|3156 Ndufs6 "NADH dehydrogenase (ubiquinone) Fe-S protein 6" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query:   101 THTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKV 160
             THTGQ  +  DYR +RFVD++K VN  FAIDLIA+ P      R++ CDGG G  GHPKV
Sbjct:    32 THTGQVSDGKDYRGIRFVDRQKEVNENFAIDLIAQQPVNEVDRRIIACDGGGGALGHPKV 91

Query:   161 YINL 164
             YINL
Sbjct:    92 YINL 95

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006936 "muscle contraction" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0010259 "multicellular organismal aging" evidence=ISO

GO:0022900 "electron transport chain" evidence=IEA

GO:0022904 "respiratory electron transport chain" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0061458 "reproductive system development" evidence=ISO

GO:0070469 "respiratory chain" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=ISO

GO:0072358 "cardiovascular system development" evidence=ISO

ZFIN|ZDB-GENE-040912-86 ndufs6 "NADH dehydrogenase (ubiquinone) Fe-S protein 6" [Danio rerio (taxid:7955)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 47/100 (47%), Positives = 61/100 (61%)

Query:    69 LLSLLKQTRV--N--RLIVPLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHV 124
             +LS  K T+V  N  RL     +  +  V+   +I THTGQ ++++D R  RFV + K V
Sbjct:     8 ILSFGKNTKVLLNCLRLSAVPVQQYSVPVSNHGEIITHTGQVYDENDVRRARFVGRHKEV 67

Query:   125 NTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
             N  FAI+L+AE P    + RVV CDGG G  GHPKVYINL
Sbjct:    68 NENFAINLVAEEPVTHVESRVVSCDGGGGALGHPKVYINL 107

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00009051 nduf-6 [Caenorhabditis elegans (taxid:6239)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 39/82 (47%), Positives = 52/82 (63%)

Query:    84 PLTRTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKE 143
             P    + K+ A F+ + THTGQ +++ DYR  RF   +K VN   A+ LI + PP+ C +
Sbjct:    27 PTPNQITKNNAQFDKV-THTGQAWDQSDYRLQRFDISKKSVNPNVAMHLIDQRPPEDCGD 85

Query:   144 -RVVWCDGGSGPTGHPKVYINL 164
              RVV+CDGG    GHPKVYINL
Sbjct:    86 KRVVFCDGGHPALGHPKVYINL 107

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=IMP

GO:0042493 "response to drug" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0MQH7	NDUS6_PANTR	No assigned EC number	0.4563	0.6219	0.8225	yes	N/A
O75380	NDUS6_HUMAN	No assigned EC number	0.4563	0.6219	0.8225	yes	N/A
P23934	NDUS6_BOVIN	No assigned EC number	0.4368	0.6219	0.8225	yes	N/A
P52503	NDUS6_MOUSE	No assigned EC number	0.5316	0.4817	0.6810	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
pfam10276	40	pfam10276, zf-CHCC, Zinc-finger domain	4e-06
pfam10276	40	pfam10276, zf-CHCC, Zinc-finger domain	5e-06

>gnl|CDD|204429 pfam10276, zf-CHCC, Zinc-finger domain

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 38 ERVVWCDGGSGPTGHPKVYINLRPE 62
           R V CDGG GP GHP+VYINL  E
Sbjct: 2  GRRVSCDGGGGPLGHPRVYINLDDE 26

This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C. Length = 40

>gnl|CDD|204429 pfam10276, zf-CHCC, Zinc-finger domain

 Score = 41.1 bits (97), Expect = 5e-06
 Identities = 16/22 (72%), Positives = 17/22 (77%)

Query: 143 ERVVWCDGGSGPTGHPKVYINL 164
            R V CDGG GP GHP+VYINL
Sbjct: 2   GRRVSCDGGGGPLGHPRVYINL 23

This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG3456|consensus	120		100.0
KOG3456|consensus	120		99.97
PF10276	40	zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Z	99.5
PF10276	40	zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Z	99.2
COG4391	62	Uncharacterized protein conserved in bacteria [Fun	98.44
COG4391	62	Uncharacterized protein conserved in bacteria [Fun	97.26

>KOG3456|consensus

Probab=100.00  E-value=4.2e-37  Score=237.05  Aligned_cols=97  Identities=45%  Similarity=0.655  Sum_probs=90.0

Q ss_pred             hhhhhHHhhhhhhcccccccc-ceeecccCcCCccccccccCCCccCCCCccccCCccCCChHHHHhhhhcCCCeeeeCc
Q psy13817         66 IMSLLSLLKQTRVNRLIVPLT-RTLAKDVAPFNDIETHTGQKFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKER  144 (164)
Q Consensus        66 vm~~Cr~l~~~~~~~~~~~~~-r~~~~~~~~~~~~~thTgq~~~~~d~r~~RF~~~~kq~np~~Ai~LI~e~p~~~v~~r  144 (164)
                      .+.+|.++.+.+....++|++ |....+.  ..+++|||||+||+.|||++||++++|.+|+||||+||+|+|++.|++|
T Consensus         2 s~~l~~~lsr~~l~~rs~pl~~r~~~~r~--~~ekvThtGq~~D~~Dyr~~rf~~~kk~vn~n~~m~LI~e~Pp~e~d~R   79 (120)
T KOG3456|consen    2 SNLLKALLSRQGLPSRSTPLTRRNFSVRT--QFEKVTHTGQVTDQSDYRGNRFVKWKKDVNENSAMELISEVPPIEVDGR   79 (120)
T ss_pred             chHHHHHHhcCCCcccccccccccceeec--ccceeeecCcccchHHHhHHHHHhhhhhcCccchhhhhhcCChhhccce
Confidence            478999999999999999999 4443333  7789999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCceeeeeC
Q psy13817        145 VVWCDGGSGPTGHPKVYINL  164 (164)
Q Consensus       145 ~v~CDGG~galGHP~VyInL  164 (164)
                      +|+||||+||||||+|||||
T Consensus        80 VV~CdGg~~aLGHPkvyInL   99 (120)
T KOG3456|consen   80 VVACDGGTPALGHPKVYINL   99 (120)
T ss_pred             EEEecCCCCCCCCCeEEEEc
Confidence            99999999999999999998

>KOG3456|consensus

Probab=99.97  E-value=5.2e-32  Score=208.84  Aligned_cols=72  Identities=47%  Similarity=0.710  Sum_probs=70.3

Q ss_pred             CCCcccCCcCCccCCccccChHHHHhhhhcCCCeeeeCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhHH
Q psy13817          1 KFEKDDYRPVRFVDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSL   72 (164)
Q Consensus         1 ~~d~~dyr~~RF~~~~kqvn~~~Ai~LI~e~p~~~v~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr~   72 (164)
                      .||++|||++||+..+|.+|+||||+||+|+|++.|++|+|+||||+||||||+||||||++..++|+||.+
T Consensus        41 ~~D~~Dyr~~rf~~~kk~vn~n~~m~LI~e~Pp~e~d~RVV~CdGg~~aLGHPkvyInLDk~~~~~CgYCGl  112 (120)
T KOG3456|consen   41 VTDQSDYRGNRFVKWKKDVNENSAMELISEVPPIEVDGRVVACDGGTPALGHPKVYINLDKPGPHICGYCGL  112 (120)
T ss_pred             ccchHHHhHHHHHhhhhhcCccchhhhhhcCChhhccceEEEecCCCCCCCCCeEEEEcCCCCCcccccchh
Confidence            389999999999999999999999999999999999999999999999999999999999999999999986

>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.50  E-value=5.9e-15  Score=95.67  Aligned_cols=36  Identities=42%  Similarity=0.743  Sum_probs=30.8

Q ss_pred             eCceEEecCCCCCCCCCeEEEEcCCC-chhhhhhhHH
Q psy13817         37 KERVVWCDGGSGPTGHPKVYINLRPE-ISYIMSLLSL   72 (164)
Q Consensus        37 ~~~~v~CDGG~galGHP~Vyinld~~-~~~vm~~Cr~   72 (164)
                      ++++|+||||+|+||||+|||+|+.+ ...+|.||..
T Consensus         1 ~~~~v~CdG~~~~lgHPrVyl~l~~~~~~~~CpYCg~   37 (40)
T PF10276_consen    1 DGRRVSCDGGGGALGHPRVYLNLDDEPGPVVCPYCGT   37 (40)
T ss_dssp             -SSEEEEEESSTTSCCCCEEEE-TTTTCEEEETTTTE
T ss_pred             CCcEEEeCCCCCCCCCCeEEEecCCCCCeEECCCCCC
Confidence            57899999999999999999999986 5699999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.

>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.20  E-value=7.1e-12  Score=81.31  Aligned_cols=23  Identities=61%  Similarity=1.196  Sum_probs=20.5

Q ss_pred             eCcEEEecCCCCCCCCceeeeeC
Q psy13817        142 KERVVWCDGGSGPTGHPKVYINL  164 (164)
Q Consensus       142 ~~r~v~CDGG~galGHP~VyInL  164 (164)
                      ++++|+||||+|+||||+|||+|
T Consensus         1 ~~~~v~CdG~~~~lgHPrVyl~l   23 (40)
T PF10276_consen    1 DGRRVSCDGGGGALGHPRVYLNL   23 (40)
T ss_dssp             -SSEEEEEESSTTSCCCCEEEE-
T ss_pred             CCcEEEeCCCCCCCCCCeEEEec
Confidence            57999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.

>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.44  E-value=1.4e-07  Score=66.72  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             CCCeeeeCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhHH
Q psy13817         31 VPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSL   72 (164)
Q Consensus        31 ~p~~~v~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr~   72 (164)
                      ..+|.+....++|+|-++++|||+|||.|.++.-.+|.||.-
T Consensus        15 ~~~I~~~~~~l~C~g~~~p~~HPrV~L~mg~~gev~CPYC~t   56 (62)
T COG4391          15 HETIEIGDLPLMCPGPEPPNDHPRVFLDMGDEGEVVCPYCST   56 (62)
T ss_pred             ceEEEeCCeeEEcCCCCCCCCCCEEEEEcCCCCcEecCcccc
Confidence            456777889999999999999999999999999999999964

>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.26  E-value=0.00025  Score=50.43  Aligned_cols=29  Identities=21%  Similarity=0.547  Sum_probs=25.3

Q ss_pred             CCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817        136 VPPKPCKERVVWCDGGSGPTGHPKVYINL  164 (164)
Q Consensus       136 ~p~~~v~~r~v~CDGG~galGHP~VyInL  164 (164)
                      ..+|.+....++|+|-++++|||+||+.+
T Consensus        15 ~~~I~~~~~~l~C~g~~~p~~HPrV~L~m   43 (62)
T COG4391          15 HETIEIGDLPLMCPGPEPPNDHPRVFLDM   43 (62)
T ss_pred             ceEEEeCCeeEEcCCCCCCCCCCEEEEEc
Confidence            45677788899999999999999999964

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	4e-15
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	3e-14
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	6e-06
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	3e-05

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} Length = 80

 Score = 65.8 bits (160), Expect = 4e-15
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 13 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYI 66
          + ++     + A   I            V CDGG G  GHP+V++++  E  ++
Sbjct: 1  MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFV 54

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2} Length = 80

 Score = 63.1 bits (153), Expect = 3e-14
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 118 VDKEKHVNTQFAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINL 164
           + ++     + A   I            V CDGG G  GHP+V++++
Sbjct: 1   MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSI 47

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} Length = 67

 Score = 41.2 bits (96), Expect = 6e-06
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 38 ERVVWCDGGSGPTGHPKVYINLRPEISYI 66
          +  V CDGG G  GHP+V++ +  +  ++
Sbjct: 13 KSRVACDGGEGALGHPRVWLQIPEDTGWV 41

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} Length = 67

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 143 ERVVWCDGGSGPTGHPKVYINL 164
           +  V CDGG G  GHP+V++ +
Sbjct: 13  KSRVACDGGEGALGHPRVWLQI 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	99.58
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	99.54
2jz8_A	87	Uncharacterized protein BH09830; zinc binding, str	99.5
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	99.33
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	99.26
2jz8_A	87	Uncharacterized protein BH09830; zinc binding, str	99.18

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}

Probab=99.58  E-value=3.9e-16  Score=113.34  Aligned_cols=50  Identities=24%  Similarity=0.286  Sum_probs=42.7

Q ss_pred             HHHhhhhcCCCeeeeCceEEecCCCCCCCCCeEEEEcC-CCchhhhhhhHH
Q psy13817         23 FAIDLIAEVPPKPCKERVVWCDGGSGPTGHPKVYINLR-PEISYIMSLLSL   72 (164)
Q Consensus        23 ~Ai~LI~e~p~~~v~~~~v~CDGG~galGHP~Vyinld-~~~~~vm~~Cr~   72 (164)
                      +|.-.+...++|+|++++|+||||+|+||||+|||+|| ++...+|.||..
T Consensus        11 ~a~m~~~apevI~V~~~~V~CdGg~g~LGHPrVyL~ld~~~g~~~CpYCg~   61 (80)
T 2jvm_A           11 SARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDR   61 (80)
T ss_dssp             CCCCCCSCCSEEEESCSEEEECCCSTTCCCCCEEEECCTTTCEEECSSSSC
T ss_pred             ccccccCCCCeEEECCcEEEcCCCCCCCCCCEEEEEccCCCCeEECCCCCC
Confidence            34444566778999999999999999999999999994 778899999975

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}

Probab=99.54  E-value=7e-16  Score=108.62  Aligned_cols=45  Identities=27%  Similarity=0.424  Sum_probs=39.6

Q ss_pred             hhcCCCeeeeCceEEecCCCCCCCCCeEEEEcC-CCchhhhhhhHH
Q psy13817         28 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINLR-PEISYIMSLLSL   72 (164)
Q Consensus        28 I~e~p~~~v~~~~v~CDGG~galGHP~Vyinld-~~~~~vm~~Cr~   72 (164)
                      |...++|+|++++|+||||+|+||||+|||+|| ++....|.||.+
T Consensus         3 ~~ape~i~v~~r~v~CdGg~g~lgHPrVyl~ld~~~g~~~CpYCg~   48 (67)
T 2jrr_A            3 IQAPETKIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDC   48 (67)
T ss_dssp             CCCCEEEEESSSEEEEEESSTTSEEEEEEEECCTTTSEEEETTTTE
T ss_pred             CCCCceEEECCCEEEeCCCCCCCCCCEEEEEccCCCCeEECCCCCC
Confidence            345567899999999999999999999999995 677889999975

>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}

Probab=99.50  E-value=4.8e-15  Score=109.08  Aligned_cols=46  Identities=20%  Similarity=0.268  Sum_probs=42.8

Q ss_pred             hhcCCCeeeeCceEEecCCCCCCCCCeEEEEcCCCchhhhhhhHHh
Q psy13817         28 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINLRPEISYIMSLLSLL   73 (164)
Q Consensus        28 I~e~p~~~v~~~~v~CDGG~galGHP~Vyinld~~~~~vm~~Cr~l   73 (164)
                      .+++|+|+|+.++++||||+|+||||||||+|+++...+|.||...
T Consensus        12 ~~~~~~IeV~~~~v~CdG~~~plgHPrVyL~i~~~g~~~CpYCg~~   57 (87)
T 2jz8_A           12 DLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTL   57 (87)
T ss_dssp             SSCCSEEECSCSEEECCCSSCSSSSSSCEEECTTCCEECCTTTCCE
T ss_pred             CCCCCeEEEcCcEEEcCCCCCCCCCCEEEEEcCCCCeEECCCCCCE
Confidence            3589999999999999999999999999999999999999999753

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}

Probab=99.33  E-value=4.1e-13  Score=97.49  Aligned_cols=32  Identities=34%  Similarity=0.697  Sum_probs=29.2

Q ss_pred             hhcCCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817        133 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINL  164 (164)
Q Consensus       133 I~e~p~~~v~~r~v~CDGG~galGHP~VyInL  164 (164)
                      +...++|+|++++|+||||+|+||||+|||||
T Consensus        16 ~~apevI~V~~~~V~CdGg~g~LGHPrVyL~l   47 (80)
T 2jvm_A           16 IEAPETVVVSTWKVACDGGEGALGHPRVWLSI   47 (80)
T ss_dssp             CSCCSEEEESCSEEEECCCSTTCCCCCEEEEC
T ss_pred             cCCCCeEEECCcEEEcCCCCCCCCCCEEEEEc
Confidence            45567899999999999999999999999997

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}

Probab=99.26  E-value=8.5e-13  Score=92.91  Aligned_cols=32  Identities=38%  Similarity=0.765  Sum_probs=28.7

Q ss_pred             hhcCCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817        133 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINL  164 (164)
Q Consensus       133 I~e~p~~~v~~r~v~CDGG~galGHP~VyInL  164 (164)
                      |...++++|++++|+||||+|+||||+|||||
T Consensus         3 ~~ape~i~v~~r~v~CdGg~g~lgHPrVyl~l   34 (67)
T 2jrr_A            3 IQAPETKIVDKSRVACDGGEGALGHPRVWLQI   34 (67)
T ss_dssp             CCCCEEEEESSSEEEEEESSTTSEEEEEEEEC
T ss_pred             CCCCceEEECCCEEEeCCCCCCCCCCEEEEEc
Confidence            34556789999999999999999999999997

>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}

Probab=99.18  E-value=7.4e-12  Score=92.13  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             hhcCCCeeeeCcEEEecCCCCCCCCceeeeeC
Q psy13817        133 IAEVPPKPCKERVVWCDGGSGPTGHPKVYINL  164 (164)
Q Consensus       133 I~e~p~~~v~~r~v~CDGG~galGHP~VyInL  164 (164)
                      .+++|+|+|++++++||||+|+||||||||||
T Consensus        12 ~~~~~~IeV~~~~v~CdG~~~plgHPrVyL~i   43 (87)
T 2jz8_A           12 DLGYKIIEIGVKEFMCVGATQPFDHPHIFIDM   43 (87)
T ss_dssp             SSCCSEEECSCSEEECCCSSCSSSSSSCEEEC
T ss_pred             CCCCCeEEEcCcEEEcCCCCCCCCCCEEEEEc
Confidence            45899999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00