Psyllid ID: psy13866

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEcccccHHHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccc
Coil and Loop (DISEMBL)
VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKfnecskqsnpsdtsktaqtkVMLFDITFLMLCSIVQRygskvvfsenggdsfFEKWVRDCmveggrpkpykkmldekdqaGVDDLLRQFnssdaefkncpklncyeicLNIPAVIYDVLGAWETSVLSSTDVKRILDAM
Flexible Loop (DISEMBL)
viicaeptlaRVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKfnecskqsnpsdtsktaqTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWetsvlsstdvkrildam
Low Complexity Region (SEG)
VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM
Disordered region (IsUnstruct)
*IICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNEC**************TKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEG********************LLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSST*********
Disordered Region (DISOPRED)
VIIC*E*TLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNEC*****************MLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKP*******KDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM
Disordered Region (DISEMBL)
VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNEC***********TAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM
Disordered Region (DISPRO)
VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSK*******SKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
Q16X15	1005	Mediator of RNA polymeras	N/A	N/A	0.975	0.195	0.5	1e-46
Q9VSF2	993	Mediator of RNA polymeras	yes	N/A	0.945	0.191	0.523	9e-42
Q7Q6D9	1036	Mediator of RNA polymeras	yes	N/A	0.970	0.188	0.419	2e-40
Q2PW47	989	Mediator of RNA polymeras	yes	N/A	0.975	0.198	0.430	8e-34
Q6PI53	988	Mediator of RNA polymeras	N/A	N/A	0.975	0.198	0.418	1e-33
Q5F3M0	986	Mediator of RNA polymeras	yes	N/A	0.975	0.198	0.415	6e-33
Q4V8B3	987	Mediator of RNA polymeras	yes	N/A	0.975	0.198	0.396	1e-31
Q99K74	987	Mediator of RNA polymeras	yes	N/A	0.975	0.198	0.396	2e-31
O75448	989	Mediator of RNA polymeras	yes	N/A	0.975	0.198	0.396	2e-30

>sp|Q16X15|MED24_AEDAE Mediator of RNA polymerase II transcription subunit 24 OS=Aedes aegypti GN=MED24 PE=3 SV=1

 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/200 (50%), Positives = 134/200 (67%), Gaps = 4/200 (2%)

Query: 2   IICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLI 61
           ++ AEP L  +L+TL ++++K+Q+ALL +L QVL+G SF+LIL+VA VEGKL TFV  LI
Sbjct: 431 VLRAEPPLVGILKTLSSDYNKVQEALLGMLCQVLSGNSFELILSVATVEGKLKTFVAGLI 490

Query: 62  KFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRD 121
           K NE SKQ  P +  K A T+  LFD++FLML  IVQ YGS+ V + +G DSFFEKWVR+
Sbjct: 491 KCNENSKQV-PGEMGKPAMTRAALFDVSFLMLVFIVQNYGSEGVLT-DGTDSFFEKWVRE 548

Query: 122 CMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVL 181
           CMVE  + K    M+   DQ  VD+L+   NS D        L   EIC NIP ++Y VL
Sbjct: 549 CMVEKHKSKSPMNMVKLCDQNKVDELIVSLNSPDG--LKATSLKWQEICANIPGLLYQVL 606

Query: 182 GAWETSVLSSTDVKRILDAM 201
            AWE   LS+ ++K+ LD++
Sbjct: 607 LAWENETLSTGEIKKFLDSL 626

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Aedes aegypti (taxid: 7159)

>sp|Q9VSF2|MED24_DROME Mediator of RNA polymerase II transcription subunit 24 OS=Drosophila melanogaster GN=MED24 PE=1 SV=2

 Score =  169 bits (429), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 130/195 (66%), Gaps = 5/195 (2%)

Query: 5   AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
           AE  L+ VL+TL T  +K+QD ++NVL QV  G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct: 419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475

Query: 65  ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
           E SK   P D  K    +  LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct: 476 ENSKPV-PGDLGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533

Query: 125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
           E  + K  +++L   D + VD+LL  F+  +A       L+  E CLN+P V++ VL AW
Sbjct: 534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEASQLKPNNLSWQETCLNLPGVLHHVLIAW 593

Query: 185 ETSVLSSTDVKRILD 199
           E   LSS DVK ILD
Sbjct: 594 EQETLSSADVKSILD 608

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA, MtnB and MtnD genes.

Drosophila melanogaster (taxid: 7227)

>sp|Q7Q6D9|MED24_ANOGA Mediator of RNA polymerase II transcription subunit 24 OS=Anopheles gambiae GN=MED24 PE=3 SV=4

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/198 (41%), Positives = 129/198 (65%), Gaps = 3/198 (1%)

Query: 6   EPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNE 65
           E  LA +L+ L T+ SK+QDALL +L QVL G S DL+L+VA+VEGK   F++ L+K N+
Sbjct: 437 ESPLAGILKALSTDCSKVQDALLAMLCQVLTGNSLDLVLSVASVEGKFKAFISGLLKCND 496

Query: 66  CSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVE 125
            +KQ+  ++  K   T+  LFD++F++L SI Q YGS V+ +E GG+SFFEKWVRD MVE
Sbjct: 497 YAKQATTAEIGKAPTTRSALFDVSFMILASIAQSYGSDVILAE-GGNSFFEKWVRDYMVE 555

Query: 126 GGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKN--CPKLNCYEICLNIPAVIYDVLGA 183
             + K    M+ + D   +++L+   N+S+  +       L   +IC  IPA+++ VL A
Sbjct: 556 RKKTKSPMTMVKQADPMVLEELIMAMNNSEGMYVGLKASSLRWEDICYTIPALVHQVLMA 615

Query: 184 WETSVLSSTDVKRILDAM 201
           WE+  ++  ++K++LD +
Sbjct: 616 WESESIAPLEIKKMLDGL 633

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q2PW47|MED24_DANRE Mediator of RNA polymerase II transcription subunit 24 OS=Danio rerio GN=med24 PE=2 SV=2

 Score =  143 bits (360), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 6/202 (2%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct: 408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
           IK NE  K  +  + SK+A  + +LFDI+FLMLC +VQ YGS+V+ S+    S   FFE 
Sbjct: 468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSSETPFFET 526

Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
           W++ CM E G+           +   V+ L+   NSS +E K   ++  +EICL+ PA I
Sbjct: 527 WLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNSS-SEMKLV-QMKWHEICLSTPAAI 584

Query: 178 YDVLGAWETSVLSSTDVKRILD 199
            +VL AWE  VLS   V++I D
Sbjct: 585 LEVLNAWENGVLSVEAVQKITD 606

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required for proliferation of enteric nervous system precursors. Required for the development of dopaminergic amacrine cells and rod photoreceptor cells in the retina.

Danio rerio (taxid: 7955)

>sp|Q6PI53|MED24_XENLA Mediator of RNA polymerase II transcription subunit 24 OS=Xenopus laevis GN=med24 PE=2 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/203 (41%), Positives = 124/203 (61%), Gaps = 7/203 (3%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 465

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
           I+ NE ++     ++SK A  + +LFDI+FLMLC + Q YGS+++ SE   GG+  FFE 
Sbjct: 466 IQLNEFTRHIG-VESSKAANVRALLFDISFLMLCHVAQTYGSEMILSEGCPGGEMPFFES 524

Query: 118 WVRDCMVEGGRP-KPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAV 176
           W++ CM   GR   P        D A V+ L+   N+S  E K   +   +E+CL+IPA 
Sbjct: 525 WMQTCMPGEGRVLNPDHPCFRHPDIAKVEALVALLNTS-TEMK-LAQTKWHEVCLSIPAA 582

Query: 177 IYDVLGAWETSVLSSTDVKRILD 199
           I ++  AWE  VLSS  +++I D
Sbjct: 583 ILEIHNAWENGVLSSEAIQKITD 605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q5F3M0|MED24_CHICK Mediator of RNA polymerase II transcription subunit 24 OS=Gallus gallus GN=MED24 PE=2 SV=1

 Score =  140 bits (352), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct: 406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKF 465

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGD---SFFEK 117
           IK NE +K  + ++ SK+A  + +LFDI+FLMLC + Q YGS+V+ SE+       FFE 
Sbjct: 466 IKLNEFTKHIS-TENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFET 524

Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
           W+  CM E G+           D   V+ L+   N+S +E K   ++N +E+CL+I A I
Sbjct: 525 WMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQINWHEVCLSISAAI 582

Query: 178 YDVLGAWETSVLSSTDVKRILD 199
            ++L AWE SVL+   +++I D
Sbjct: 583 LEILNAWENSVLTFESIQKITD 604

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q4V8B3|MED24_RAT Mediator of RNA polymerase II transcription subunit 24 OS=Rattus norvegicus GN=Med24 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
           I  NE +   +  +++KTA  + +LFDI+FLMLC + Q YGS+V+ SE+       FFE 
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525

Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
           W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583

Query: 178 YDVLGAWETSVLSSTDVKRILD 199
            ++L AWE  VL+   +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Rattus norvegicus (taxid: 10116)

>sp|Q99K74|MED24_MOUSE Mediator of RNA polymerase II transcription subunit 24 OS=Mus musculus GN=Med24 PE=1 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 6/202 (2%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct: 407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
           I  NE +   +  +++KTA  + +LFDI+FLMLC + Q YGS+V+ SE+       FFE 
Sbjct: 467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525

Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
           W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct: 526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583

Query: 178 YDVLGAWETSVLSSTDVKRILD 199
            ++L AWE  VL+   +++I D
Sbjct: 584 LEILNAWENGVLAFESIQKITD 605

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity). Required for basal and activator-dependent transcription.

Mus musculus (taxid: 10090)

>sp|O75448|MED24_HUMAN Mediator of RNA polymerase II transcription subunit 24 OS=Homo sapiens GN=MED24 PE=1 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/202 (39%), Positives = 122/202 (60%), Gaps = 6/202 (2%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct: 409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
           I  NE +   +  +++K A  + +LFDI+FLMLC + Q YGS+V+ SE+  G +  FFE 
Sbjct: 469 INLNEFTTYGS-EESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527

Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
           W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct: 528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585

Query: 178 YDVLGAWETSVLSSTDVKRILD 199
            ++L AWE  VL+   +++I D
Sbjct: 586 LEILNAWENGVLAFESIQKITD 607

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
383854732	999	PREDICTED: mediator of RNA polymerase II	0.995	0.200	0.567	8e-57
307204979	990	Mediator of RNA polymerase II transcript	0.990	0.201	0.577	4e-56
350397832	999	PREDICTED: mediator of RNA polymerase II	0.995	0.200	0.552	1e-54
340724378	999	PREDICTED: mediator of RNA polymerase II	0.995	0.200	0.552	3e-54
380021033	999	PREDICTED: mediator of RNA polymerase II	0.995	0.200	0.552	1e-53
328782931	999	PREDICTED: mediator of RNA polymerase II	0.995	0.200	0.552	2e-53
307170583	1059	Mediator of RNA polymerase II transcript	0.990	0.187	0.562	2e-53
332028573	978	Mediator of RNA polymerase II transcript	0.990	0.203	0.562	5e-53
328716678	967	PREDICTED: mediator of RNA polymerase II	0.990	0.205	0.542	1e-52
242003239	782	Thyroid hormone receptor-associated prot	0.960	0.246	0.573	1e-51

>gi|383854732|ref|XP_003702874.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24-like [Megachile rotundata]

 Score =  225 bits (573), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 114/201 (56%), Positives = 146/201 (72%), Gaps = 1/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL+GKSF+L+LAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLSGKSFELMLAVATVEGKLKTFVTKL 481

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNECSKQ N     KTA T+ MLFD++FLMLCSIVQ YGS  V  E GGDSFFE+WVR
Sbjct: 482 IKFNECSKQINEPVQPKTAATRAMLFDVSFLMLCSIVQTYGSDAVLEEGGGDSFFEQWVR 541

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
           +CM E  +PK  +KML   D A VD LL Q NS D +FK+   +  +  C +    + ++
Sbjct: 542 ECMPERNQPKSPQKMLQNIDPARVDALLAQINSPDPDFKSS-NIKWHIACQSAMGAVKEL 600

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VL + DVKR LD +
Sbjct: 601 LCAWESDVLGAGDVKRALDGL 621

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204979|gb|EFN83518.1| Mediator of RNA polymerase II transcription subunit 24 [Harpegnathos saltator]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 116/201 (57%), Positives = 146/201 (72%), Gaps = 2/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VII AEPTLA +L+TL+ +++KIQ+ALL++L +VL G SF+L+LAVA VEGKL TFVTKL
Sbjct: 414 VIIRAEPTLAGILKTLNADYTKIQEALLSMLREVLTGNSFELMLAVATVEGKLKTFVTKL 473

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNECS+Q N     KTA T+ MLFD++FLMLCSIVQ YGS VV  E GGDSFFE+WVR
Sbjct: 474 IKFNECSRQINEPVPGKTAATRAMLFDMSFLMLCSIVQTYGSDVVL-EEGGDSFFEQWVR 532

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
            CM E  +PK  ++ML   D A VD LL Q NS D +FK+   L  +  C +    + ++
Sbjct: 533 GCMPERNKPKSPQRMLQNIDPARVDALLAQINSPDLDFKSS-NLKWHVACQSAMGAVKEL 591

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VLS+ DVKR LD +
Sbjct: 592 LCAWESGVLSAGDVKRALDGL 612

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397832|ref|XP_003485006.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24-like [Bombus impatiens]

 Score =  218 bits (554), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/201 (55%), Positives = 144/201 (71%), Gaps = 1/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL GKSF+L+LAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGKSFELMLAVATVEGKLKTFVTKL 481

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNECSKQ +     KTA T+ MLFDI+FLMLCSIVQ YGS  V  E  GDSFFE+WVR
Sbjct: 482 IKFNECSKQISEPVPPKTAATRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
           +CM E  +PK  +KML   D A VD LL Q NS + + K+   +  +  C +    + ++
Sbjct: 542 ECMPERNQPKSPQKMLQNIDPARVDALLAQINSPETDLKSS-NIKWHIACQSAMGAVKEL 600

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724378|ref|XP_003400559.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24-like [Bombus terrestris]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 111/201 (55%), Positives = 144/201 (71%), Gaps = 1/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL GKSF+L+LAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGKSFELMLAVATVEGKLKTFVTKL 481

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNECSKQ + S   KTA T+ MLFDI+FLMLCSIVQ YGS  V  E  GDSFFE+WVR
Sbjct: 482 IKFNECSKQISESVPPKTAATRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
           +CM E  +PK  +KML   D A VD LL Q NS + +  +   +  +  C +    + ++
Sbjct: 542 ECMPERNQPKSPQKMLQNIDPAKVDALLAQINSPETDLISS-NIKWHISCQSAMGAVKEL 600

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021033|ref|XP_003694379.1| PREDICTED: mediator of RNA polymerase II transcription subunit 24-like [Apis florea]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/201 (55%), Positives = 141/201 (70%), Gaps = 1/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL G SF+LILAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGNSFELILAVATVEGKLKTFVTKL 481

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNECSKQ N     KTA  + MLFDI+FLMLCSIVQ YGS  V  E  GDSFFE+WVR
Sbjct: 482 IKFNECSKQINEPVPPKTAAKRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
           + M E  +PK  +KML   D A VD LL Q NS D + K+   +  +  C +    + ++
Sbjct: 542 EYMPERNQPKSPQKMLQNIDPARVDALLAQINSPDPDLKSS-NIKWHIACQSAMGAVKEL 600

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782931|ref|XP_392006.3| PREDICTED: mediator of RNA polymerase II transcription subunit 24 [Apis mellifera]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/201 (55%), Positives = 141/201 (70%), Gaps = 1/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VI+ AEPTL+ +L+TL+ +++KI +ALL++L QVL G SF+LILAVA VEGKL TFVTKL
Sbjct: 422 VIVRAEPTLSGILKTLNADYTKIHEALLSMLYQVLTGNSFELILAVATVEGKLKTFVTKL 481

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNECSKQ N     KTA  + MLFDI+FLMLCSIVQ YGS  V  E  GDSFFE+WVR
Sbjct: 482 IKFNECSKQINEPVPPKTAAKRAMLFDISFLMLCSIVQTYGSDAVLEEGEGDSFFEQWVR 541

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
           + M E  +PK  +KML   D A VD LL Q NS D + K+   +  +  C +    + ++
Sbjct: 542 EYMPERNQPKSPQKMLQNIDPARVDALLAQINSPDPDLKSS-NIKWHIACQSAMGAVKEL 600

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VL ++DVKR LD +
Sbjct: 601 LCAWESDVLGASDVKRALDGL 621

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170583|gb|EFN62777.1| Mediator of RNA polymerase II transcription subunit 24 [Camponotus floridanus]

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/201 (56%), Positives = 142/201 (70%), Gaps = 2/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VII A+PTLA +L+TL+ +++KIQ+ALL++L  VL G SF+L+LAVA VEGKL TFV KL
Sbjct: 483 VIIRAKPTLAGILKTLNADYTKIQEALLSMLYHVLTGNSFELMLAVATVEGKLKTFVAKL 542

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNE SKQ N     KTA T+ MLFD++FLMLCSIVQ YGS VV  E GGDSFFE+WV 
Sbjct: 543 IKFNESSKQINEPVPDKTAATRAMLFDVSFLMLCSIVQTYGSDVVL-EEGGDSFFEQWVY 601

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
           +CM E  +PK  +KML   D A VD LL Q NS D +FK+   L  +  C +    + ++
Sbjct: 602 ECMPERNKPKSPQKMLQSVDPARVDALLAQINSPDPDFKSS-NLKWHVACQSAMGAVKEL 660

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VL + DVKR LD +
Sbjct: 661 LCAWESGVLGAGDVKRALDGL 681

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028573|gb|EGI68610.1| Mediator of RNA polymerase II transcription subunit 24 [Acromyrmex echinatior]

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 113/201 (56%), Positives = 142/201 (70%), Gaps = 2/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           VI+ A  TL  +LRTL+ +++KIQ+ LL+VL QVL GKSF+L+LAVA VEG+L TFVTKL
Sbjct: 402 VIVRAGQTLNGILRTLNADYAKIQEGLLSVLYQVLTGKSFELMLAVATVEGELKTFVTKL 461

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNECSKQ N     KTA T+ MLFD++FLMLCSIVQ YGS VV  E GGDSFFE+WVR
Sbjct: 462 IKFNECSKQINEPVPDKTAATRAMLFDVSFLMLCSIVQTYGSDVVL-EEGGDSFFEQWVR 520

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
           +CM E  + K  ++ML   D A VD LL Q NS D +FK+   L  +  C +    + ++
Sbjct: 521 ECMPERNKLKSPQRMLQSVDSARVDALLAQINSPDPDFKSS-NLKWHVACQSAMGAVKEL 579

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE+ VL + DVKR LD +
Sbjct: 580 LCAWESGVLGAGDVKRALDGL 600

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716678|ref|XP_001946687.2| PREDICTED: mediator of RNA polymerase II transcription subunit 24-like [Acyrthosiphon pisum]

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 144/201 (71%), Gaps = 2/201 (0%)

Query: 1   VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
           +I+  EPTL R+LRTLD+++SKIQ+AL++VLSQVL+G S +LILA A+VEGKL  FV+K+
Sbjct: 411 IIMRTEPTLQRMLRTLDSDYSKIQEALVSVLSQVLSGNSLELILAAASVEGKLRMFVSKV 470

Query: 61  IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVR 120
           IKFNE SKQ N  D +K+ +T  +LFD+TFLMLC I Q+YG + +F + G D+FFEKW R
Sbjct: 471 IKFNEFSKQINLQDGAKSVRTNAVLFDMTFLMLCFITQKYGYQSIFLDGGNDTFFEKWCR 530

Query: 121 DCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDV 180
            CMVE G PK ++ ++ E D + V  LL   N  + +  NC   +  +IC+ I    +DV
Sbjct: 531 QCMVELGNPKSHETIMGECDPSKVTALLTAINDGE-DLINC-DTSWDQICITIIGATHDV 588

Query: 181 LGAWETSVLSSTDVKRILDAM 201
           L AWE S LSS DVKRILDAM
Sbjct: 589 LVAWENSTLSSNDVKRILDAM 609

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242003239|ref|XP_002422662.1| Thyroid hormone receptor-associated protein complex 100 kDa component, putative [Pediculus humanus corporis] gi|212505473|gb|EEB09924.1| Thyroid hormone receptor-associated protein complex 100 kDa component, putative [Pediculus humanus corporis]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/204 (57%), Positives = 144/204 (70%), Gaps = 11/204 (5%)

Query: 1   VIICAEPTLARVLRTLDTE---FSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFV 57
           VII AEPTLAR+LRTLD +     ++Q  L  +L     GKSFDLI AVAAV+GKL TFV
Sbjct: 408 VIIRAEPTLARLLRTLDADNIKMVRVQTVLCPIL-----GKSFDLITAVAAVDGKLRTFV 462

Query: 58  TKLIKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEK 117
           TKLIKFNE  K  +  +  K +QT+ +LFD++FLMLCSIV  YGS+VV SE GGDSFFE 
Sbjct: 463 TKLIKFNETYKYGH-GEGPKQSQTRALLFDVSFLMLCSIVNIYGSQVVLSEEGGDSFFEL 521

Query: 118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
           WVR+ MVE G PK  + +L   D + VD LL QFNS++ +FK   ++   EICLN+PA I
Sbjct: 522 WVRESMVEKGNPKSPESILALTDNSKVDALLAQFNSNE-DFKT-SQVKWNEICLNVPAAI 579

Query: 178 YDVLGAWETSVLSSTDVKRILDAM 201
            +VL AWE   LS+ DVKRILD+M
Sbjct: 580 KEVLLAWEQGTLSANDVKRILDSM 603

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
FB|FBgn0035851	993	MED24 "Mediator complex subuni	0.945	0.191	0.523	1.2e-39
UNIPROTKB|H9L063	986	MED24 "Mediator of RNA polymer	0.975	0.198	0.420	7.8e-35
UNIPROTKB|Q5F3M0	986	MED24 "Mediator of RNA polymer	0.975	0.198	0.420	7.8e-35
ZFIN|ZDB-GENE-030131-2341	989	med24 "mediator complex subuni	0.975	0.198	0.430	7.9e-35
UNIPROTKB|F1MUK2	989	MED24 "Uncharacterized protein	0.975	0.198	0.410	9.3e-34
MGI|MGI:1344385	987	Med24 "mediator complex subuni	0.975	0.198	0.400	1.9e-33
RGD|1564565	987	Med24 "mediator complex subuni	0.975	0.198	0.400	1.9e-33
UNIPROTKB|Q4V8B3	987	Med24 "Mediator of RNA polymer	0.975	0.198	0.400	1.9e-33
UNIPROTKB|F5H5K2	791	MED24 "Mediator of RNA polymer	0.975	0.247	0.400	8.3e-33
UNIPROTKB|O75448	989	MED24 "Mediator of RNA polymer	0.975	0.198	0.400	1.4e-32

FB|FBgn0035851 MED24 "Mediator complex subunit 24" [Drosophila melanogaster (taxid:7227)]

 Score = 433 (157.5 bits), Expect = 1.2e-39, P = 1.2e-39
 Identities = 102/195 (52%), Positives = 130/195 (66%)

Query:     5 AEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFN 64
             AE  L+ VL+TL T  +K+QD ++NVL QV  G SF+LIL+VA VEG+L TFV++LI+ N
Sbjct:   419 AEVPLSGVLKTLCT--NKVQD-MVNVLCQVPVGNSFELILSVATVEGRLKTFVSRLIQCN 475

Query:    65 ECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMV 124
             E SK   P D  K    +  LFD++FLML SIVQ YGS VV SE G DSFFEKWVR+CMV
Sbjct:   476 ENSKPV-PGDLGKLCVIRSTLFDVSFLMLTSIVQTYGSDVVLSERG-DSFFEKWVRECMV 533

Query:   125 EGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVLGAW 184
             E  + K  +++L   D + VD+LL  F+  +A       L+  E CLN+P V++ VL AW
Sbjct:   534 ERNKLKNPRQILALCDDSIVDELLLSFSKPEASQLKPNNLSWQETCLNLPGVLHHVLIAW 593

Query:   185 ETSVLSSTDVKRILD 199
             E   LSS DVK ILD
Sbjct:   594 EQETLSSADVKSILD 608

GO:0016592 "mediator complex" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

UNIPROTKB|H9L063 MED24 "Mediator of RNA polymerase II transcription subunit 24" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 7.8e-35, P = 7.8e-35
 Identities = 85/202 (42%), Positives = 126/202 (62%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKF 465

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
             IK NE +K  + ++ SK+A  + +LFDI+FLMLC + Q YGS+V+ SE+   D   FFE 
Sbjct:   466 IKLNEFTKHIS-TENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFET 524

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W+  CM E G+           D   V+ L+   N+S +E K   ++N +E+CL+I A I
Sbjct:   525 WMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQINWHEVCLSISAAI 582

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE SVL+   +++I D
Sbjct:   583 LEILNAWENSVLTFESIQKITD 604

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

UNIPROTKB|Q5F3M0 MED24 "Mediator of RNA polymerase II transcription subunit 24" [Gallus gallus (taxid:9031)]

 Score = 388 (141.6 bits), Expect = 7.8e-35, P = 7.8e-35
 Identities = 85/202 (42%), Positives = 126/202 (62%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   406 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAWKF 465

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
             IK NE +K  + ++ SK+A  + +LFDI+FLMLC + Q YGS+V+ SE+   D   FFE 
Sbjct:   466 IKLNEFTKHIS-TENSKSAPVRALLFDISFLMLCHVAQTYGSEVILSESRPADEVPFFET 524

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W+  CM E G+           D   V+ L+   N+S +E K   ++N +E+CL+I A I
Sbjct:   525 WMLTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQINWHEVCLSISAAI 582

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE SVL+   +++I D
Sbjct:   583 LEILNAWENSVLTFESIQKITD 604

GO:0003712 "transcription cofactor activity" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0046966 "thyroid hormone receptor binding" evidence=ISS

ZFIN|ZDB-GENE-030131-2341 med24 "mediator complex subunit 24" [Danio rerio (taxid:7955)]

 Score = 388 (141.6 bits), Expect = 7.9e-35, P = 7.9e-35
 Identities = 87/202 (43%), Positives = 123/202 (60%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   408 LILRAEPTVTNILKTVDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 467

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDS---FFEK 117
             IK NE  K  +  + SK+A  + +LFDI+FLMLC +VQ YGS+V+ S+    S   FFE 
Sbjct:   468 IKLNEFPKHIS-GEGSKSASVRALLFDISFLMLCHVVQTYGSEVILSDPSPSSETPFFET 526

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W++ CM E G+           +   V+ L+   NSS +E K   ++  +EICL+ PA I
Sbjct:   527 WLQTCMPEEGKTLNPDHPCFRPESGKVESLVALLNSS-SEMK-LVQMKWHEICLSTPAAI 584

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              +VL AWE  VLS   V++I D
Sbjct:   585 LEVLNAWENGVLSVEAVQKITD 606

GO:0046549 "retinal cone cell development" evidence=IMP

GO:0048484 "enteric nervous system development" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1MUK2 MED24 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 378 (138.1 bits), Expect = 9.3e-34, P = 9.3e-34
 Identities = 83/202 (41%), Positives = 121/202 (59%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGDSFF-EK 117
             I  NE +   +   T K A  + +LFDI+FLMLC + Q YGS+V+ SE+  GG+ FF E 
Sbjct:   469 INLNEFTTHRSEEST-KAASVRALLFDISFLMLCHVAQTYGSEVILSESNTGGEVFFFET 527

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CLNI A I
Sbjct:   528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEIK-LVQMKWHEACLNISAAI 585

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE  VL+   +++I D
Sbjct:   586 LEILNAWENGVLAFESIQKITD 607

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

MGI|MGI:1344385 Med24 "mediator complex subunit 24" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 1.9e-33, P = 1.9e-33
 Identities = 81/202 (40%), Positives = 123/202 (60%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
             I  NE +   +  +++KTA  + +LFDI+FLMLC + Q YGS+V+ SE+  G+   FFE 
Sbjct:   467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct:   526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE  VL+   +++I D
Sbjct:   584 LEILNAWENGVLAFESIQKITD 605

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0004402 "histone acetyltransferase activity" evidence=ISO

GO:0004872 "receptor activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016573 "histone acetylation" evidence=ISO

GO:0016592 "mediator complex" evidence=IDA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

RGD|1564565 Med24 "mediator complex subunit 24" [Rattus norvegicus (taxid:10116)]

 Score = 375 (137.1 bits), Expect = 1.9e-33, P = 1.9e-33
 Identities = 81/202 (40%), Positives = 123/202 (60%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
             I  NE +   +  +++KTA  + +LFDI+FLMLC + Q YGS+V+ SE+  G+   FFE 
Sbjct:   467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct:   526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE  VL+   +++I D
Sbjct:   584 LEILNAWENGVLAFESIQKITD 605

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0004872 "receptor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0016573 "histone acetylation" evidence=IDA

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0019827 "stem cell maintenance" evidence=IEA;ISO

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|Q4V8B3 Med24 "Mediator of RNA polymerase II transcription subunit 24" [Rattus norvegicus (taxid:10116)]

 Score = 375 (137.1 bits), Expect = 1.9e-33, P = 1.9e-33
 Identities = 81/202 (40%), Positives = 123/202 (60%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   407 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 466

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENG-GDS--FFEK 117
             I  NE +   +  +++KTA  + +LFDI+FLMLC + Q YGS+V+ SE+  G+   FFE 
Sbjct:   467 INLNEFTTHGS-GESTKTASVRALLFDISFLMLCHVAQTYGSEVILSESSSGEEVPFFET 525

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct:   526 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 583

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE  VL+   +++I D
Sbjct:   584 LEILNAWENGVLAFESIQKITD 605

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

UNIPROTKB|F5H5K2 MED24 "Mediator of RNA polymerase II transcription subunit 24" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 8.3e-33, P = 8.3e-33
 Identities = 81/202 (40%), Positives = 120/202 (59%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   359 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 418

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
             I  NE +   +   T K A  + +LFDI+FLMLC + Q YGS+V+ SE+  G +  FFE 
Sbjct:   419 INLNEFTTYGSEEST-KPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 477

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct:   478 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 535

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE  VL+   +++I D
Sbjct:   536 LEILNAWENGVLAFESIQKITD 557

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

UNIPROTKB|O75448 MED24 "Mediator of RNA polymerase II transcription subunit 24" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 81/202 (40%), Positives = 120/202 (59%)

Query:     1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKL 60
             +I+ AEPT+  +L+T+D + SK  + LL VL  +L+GKS DL+LA AA  GKL +F  K 
Sbjct:   409 LILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKF 468

Query:    61 IKFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSEN--GGD-SFFEK 117
             I  NE +   +   T K A  + +LFDI+FLMLC + Q YGS+V+ SE+  G +  FFE 
Sbjct:   469 INLNEFTTYGSEEST-KPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFET 527

Query:   118 WVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVI 177
             W++ CM E G+           D   V+ L+   N+S +E K   ++  +E CL+I A I
Sbjct:   528 WMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNS-SEMK-LVQMKWHEACLSISAAI 585

Query:   178 YDVLGAWETSVLSSTDVKRILD 199
              ++L AWE  VL+   +++I D
Sbjct:   586 LEILNAWENGVLAFESIQKITD 607


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       201   0.00089  111 3  11 22  0.45    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:05
  No. of threads or processors used:  24
  Search cpu time:  18.61u 0.09s 18.70t   Elapsed:  00:00:16
  Total cpu time:  18.61u 0.09s 18.70t   Elapsed:  00:00:24
  Start:  Thu Aug 15 13:45:00 2013   End:  Thu Aug 15 13:45:24 2013

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0016592 "mediator complex" evidence=NAS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IDA

GO:0030521 "androgen receptor signaling pathway" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=NAS

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0003712 "transcription cofactor activity" evidence=IDA

GO:0042809 "vitamin D receptor binding" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VSF2	MED24_DROME	No assigned EC number	0.5230	0.9452	0.1913	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	201
pfam11277	991	pfam11277, Med24_N, Mediator complex subunit 24 N-	3e-71

>gnl|CDD|221056 pfam11277, Med24_N, Mediator complex subunit 24 N-terminal

 Score =  232 bits (593), Expect = 3e-71
 Identities = 107/198 (54%), Positives = 139/198 (70%), Gaps = 4/198 (2%)

Query: 2   IICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLI 61
           I+ AEP L  +L+TLD + SK+Q+ LL VL QVL+G S DL+L+VAAVEGKL +F  KLI
Sbjct: 414 ILRAEPPLTGILKTLDADHSKVQEGLLGVLCQVLSGNSLDLLLSVAAVEGKLKSFARKLI 473

Query: 62  KFNECSKQSNPSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRD 121
           K NE SK   P ++ K A  + +LFD++FLMLC IVQ YGS+V+ SE GGDSFFEKWVR 
Sbjct: 474 KCNEFSKHV-PGESGKAASVRALLFDVSFLMLCHIVQTYGSEVILSE-GGDSFFEKWVRT 531

Query: 122 CMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKNCPKLNCYEICLNIPAVIYDVL 181
           CMVE G+ K         D + V++L+   N+S+ E K   +L  +EICL+IPA I +VL
Sbjct: 532 CMVEEGKTKNPDHPCFRPDSSKVEELVALLNNSE-ELK-LVQLKWHEICLSIPAAILEVL 589

Query: 182 GAWETSVLSSTDVKRILD 199
            AWE  VLSS ++K+ILD
Sbjct: 590 NAWENEVLSSEEIKKILD 607

This subunit of the Mediator complex appears to be conserved only from insects to humans. It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14. Length = 991

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PF11277	990	Med24_N: Mediator complex subunit 24 N-terminal; I	100.0
PHA02135	122	hypothetical protein	90.42

>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans

Probab=100.00  E-value=3.8e-87  Score=662.83  Aligned_cols=197  Identities=60%  Similarity=0.915  Sum_probs=195.2

Q ss_pred             CceeccccHHHHHHhhccccccchHHHHHHHHhhhccchHHHHHHHHHhhcchhHHHHHhcccccccccCCCCCCccccc
Q psy13866          1 VIICAEPTLARVLRTLDTEFSKIQDALLNVLSQVLNGKSFDLILAVAAVEGKLCTFVTKLIKFNECSKQSNPSDTSKTAQ   80 (201)
Q Consensus         1 ~IlrAEptl~~IlKtl~aD~sK~qe~Ll~~L~~mlsGkSfdlilAaAa~~GkLk~Fa~kLIk~NE~~K~~~~e~~~K~a~   80 (201)
                      +|+||||||++|||||||||||+||+|++|||||+||||||+||||||+|||||+||+|||||||++||++||+ +|+|+
T Consensus       413 lIlRAE~tl~~IlKtl~ad~~k~~e~ll~vL~~mlsG~SfdlilAaAa~~GkLk~FaskLIk~Ne~~K~~~~e~-~K~a~  491 (990)
T PF11277_consen  413 LILRAEPTLTGILKTLDADYSKSQEGLLGVLCQMLSGKSFDLILAAAAVTGKLKSFASKLIKCNEFSKQISGEG-SKSAQ  491 (990)
T ss_pred             eEEecccHHHHHHHHhccccccchHHHHHHHHhhccCCcHHHHHHHHHHcccHHHHHHHHHhhccccccCCccc-cccch
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             hhHhhhhHHHHHHHHHHHhhCcceEecCCCCChhHHHHHHHHHhcCCCCCChhhhhhccChhhHHHHHHhhccCcccccc
Q psy13866         81 TKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRDCMVEGGRPKPYKKMLDEKDQAGVDDLLRQFNSSDAEFKN  160 (201)
Q Consensus        81 ~ra~LFDiSFLmLc~IvQ~YGse~vl~~~~gdsFFe~Wv~~cm~e~~~~ksP~~~l~~~Dp~~Vd~Ll~~lns~~~efk~  160 (201)
                      +||+||||||||||||+|+||+|+|++|+ |+|||||||++||+|++|++||++++++|||++||+||++||+|+ |||+
T Consensus       492 ~Ra~LFDiSFLMLc~i~q~YGsevvlse~-~~SfFe~Wv~~~m~e~~~~~sP~~~~~~~d~~~vd~ll~~l~~~~-~~k~  569 (990)
T PF11277_consen  492 TRALLFDISFLMLCSIVQTYGSEVVLSEN-GDSFFEKWVRECMPEEGKSKSPDQPLALCDPAKVDSLLAQLNSSQ-EFKL  569 (990)
T ss_pred             hHHHHHhhHHHHHHHHHHHcCCcEEECCC-CCcHHHHHHHHhcccccCCCChhhhhhccCchhHHHHHHHhcCcc-ccCc
Confidence            99999999999999999999999999987 999999999999999999999999999999999999999999999 9999


Q ss_pred             CCCCchHHHhhchHHHHHHHHHHhhcCCCChHHHHHHhhcC
Q psy13866        161 CPKLNCYEICLNIPAVIYDVLGAWETSVLSSTDVKRILDAM  201 (201)
Q Consensus       161 ~~~~kW~eiC~nip~ai~evL~AwE~g~lS~~~VkrilD~l  201 (201)
                      + ++||||||+||||+|+|||+|||+|+||.+|||||||||
T Consensus       570 ~-~~kW~eiC~~iP~~i~eiL~AwE~g~ls~~~Vk~ild~i  609 (990)
T PF11277_consen  570 S-QVKWHEICLNIPGAIKEILNAWENGTLSIEEVKRILDNI  609 (990)
T ss_pred             c-cCcHHHHHHhhHHHHHHHHHHHHhCcccHHHHHHHHHHh
Confidence            9 999999999999999999999999999999999999986

It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].

>PHA02135 hypothetical protein

Probab=90.42  E-value=0.25  Score=39.86  Aligned_cols=58  Identities=29%  Similarity=0.420  Sum_probs=45.3

Q ss_pred             hHHHHHhc-ccccccccCC--CCCCccccchhHhhhhHHHHHHHHHHHhhCcceEecCCCCChhHHHHHHH
Q psy13866         54 CTFVTKLI-KFNECSKQSN--PSDTSKTAQTKVMLFDITFLMLCSIVQRYGSKVVFSENGGDSFFEKWVRD  121 (201)
Q Consensus        54 k~Fa~kLI-k~NE~~K~~~--~e~~~K~a~~ra~LFDiSFLmLc~IvQ~YGse~vl~~~~gdsFFe~Wv~~  121 (201)
                      ..||-|.| +|||...+.+  +-.|.|.-++..+|=|++=|   +++|+||.|--       -=..||+++
T Consensus        27 ~~fa~kvi~~fn~nt~~~~~~~v~pm~~~ps~~yl~~m~rl---f~~~ry~~e~~-------~d~r~wc~~   87 (122)
T PHA02135         27 AEFADKVISKFNDNTSNYPGISVPPMKGKPTMGYLGEMTRL---FFIQRYNKENN-------KDWRKWCRE   87 (122)
T ss_pred             HHHHHHHHHHhccCCcCCCccccCccCCCCcchhhhcccHH---HHHHHhhhhhh-------hHHHHHHhc
Confidence            47999999 8999987766  34458888999999998866   57999998742       226788884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00