Psyllid ID: psy13905

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MLTQVEYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDELDEI
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEcccccccccccEEEccccccHHHHHHccccccccccccEEEEEEcccccEEEEcccccccccccccccccEEEEEcccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccEEEEccccccEEEEEEcccccccccEEEEEEEcccccccccEEccEEEEEcccccEEEEccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHcccccEEEEEEEcccccccccccEEcccccccHHHHHHHHHHHcccccccEEEEEEcccccEEEEccccccHHcccccccccEEEEEcccccccccccEEEEEccHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEEEEccccccccEEEEEEccccccEccEEccEEccccccccEEEEcHHHEEEccccccccccccccc
Coil and Loop (DISEMBL)
MLTQVEYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLtgqmssnmTISLYnrnhdlvshlsdnsmllgqypvenemTLFVEgnyltdglessetkyvlpeekYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILKDievgkrckindsdvrfgTVMFVGETKFSSGVWvgvkldepfgknngtvkdvkyfeceenygmfvkpgrltigdfpvldpfdeldei
Flexible Loop (DISEMBL)
MLTQVEYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEERLRREALlkenneekdkcleenilkdievgkrckindsDVRFGTVMFVGETKFSSGVWVGVKLdepfgknngtvkdVKYFECEENYGMfvkpgrltigdfpvldpfdeldei
Low Complexity Region (SEG)
MLTQVEYMDIMDGGGTVELYITNSKDKHESClnlkklklnnTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQkeerlrreallkenneekdkcleenILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDELDEI
Disordered region (IsUnstruct)
*****EYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGL************************************************CLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDP*******
Disordered Region (DISOPRED)
***Q*EYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRN**********SMLLGQYPVENEMTLFV******************************************************************IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDP***LDEI
Disordered Region (DISEMBL)
MLTQVEYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDELDEI
Disordered Region (DISPRO)
MLTQVEYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLD********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTQVEYMDIMDGGGTVELYITNSKDKHESCLNLKxxxxxxxxxxxxxxxxxxxxxMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMxxxxxxxxxxxxxxxxxxxxxxxCLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDELDEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q9D1E6	244	Tubulin-folding cofactor	yes	N/A	0.883	0.897	0.371	8e-34
Q99426	244	Tubulin-folding cofactor	yes	N/A	0.883	0.897	0.366	8e-33
Q5E951	244	Tubulin-folding cofactor	yes	N/A	0.883	0.897	0.344	4e-32
Q20728	229	Tubulin-specific chaperon	yes	N/A	0.826	0.895	0.360	3e-27
Q54Z01	270	Tubulin-specific chaperon	yes	N/A	0.887	0.814	0.325	8e-20
Q922J3	1391	CAP-Gly domain-containing	no	N/A	0.302	0.053	0.441	2e-15
P30622	1438	CAP-Gly domain-containing	no	N/A	0.302	0.052	0.441	2e-15
O42184	1433	CAP-Gly domain-containing	yes	N/A	0.278	0.048	0.450	8e-15
P13496	1265	Dynactin subunit 1 OS=Dro	no	N/A	0.290	0.056	0.506	4e-14
Q01397	1367	Dynactin, 150 kDa isoform	N/A	N/A	0.286	0.051	0.464	1e-13

>sp|Q9D1E6|TBCB_MOUSE Tubulin-folding cofactor B OS=Mus musculus GN=Tbcb PE=1 SV=2

 Score =  144 bits (362), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 16  TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
           TV ++I++S +   S    K+   + TI E K KLEL+ G  +S M + LY  +    S 
Sbjct: 10  TVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSK 66

Query: 76  LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
           L     LLG YPV++   + V    G  L +  + S+  KY +  E Y+  +  +++FM 
Sbjct: 67  LDQEDALLGSYPVDDGCRIHVIDHSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMK 126

Query: 132 KQKEERLRREALLKENNEEKDKCLEENI-LKDIEVGKRCKIN--DSDVRFGTVMFVGETK 188
           + K      E   ++  E   +  EE      I VG RC++   D  +R GTVM+VG T 
Sbjct: 127 RSKLGPYNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD 186

Query: 189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           F  G WVGV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP
Sbjct: 187 FKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDFP 235

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer (By similarity). Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.
Mus musculus (taxid: 10090)

>sp|Q99426|TBCB_HUMAN Tubulin-folding cofactor B OS=Homo sapiens GN=TBCB PE=1 SV=2

 Score =  140 bits (353), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 10/229 (4%)

Query: 16  TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
           TV ++I++S +   S    K+   + TI E K KLELL G  +S M + LY  +    S 
Sbjct: 10  TVTVFISSSLNTFRS---EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSK 66

Query: 76  LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
           L     LLG YPV++   + V    G  L +  + S   KY + +E Y + ++ +++F+ 
Sbjct: 67  LDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLK 126

Query: 132 KQKEERLRREALLKENNEEKDKCLEENI-LKDIEVGKRCKINDS--DVRFGTVMFVGETK 188
           + K  R   E   ++  E   +  EE      I VG RC++  +    R GTVM+VG T 
Sbjct: 127 RSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD 186

Query: 189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           F  G W+GV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP
Sbjct: 187 FKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFP 235

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer. Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q5E951|TBCB_BOVIN Tubulin-folding cofactor B OS=Bos taurus GN=TBCB PE=2 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 16  TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
           TV ++I++S +   S    K+   + T+ E K KL+L+ G  +S M + LY  +      
Sbjct: 10  TVNVFISSSLNSFRS---QKRYSRSLTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCK 66

Query: 76  LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
           L  +  LLG YPV++   + V    G  L +  + S+  KY + +E Y++ ++++++F+ 
Sbjct: 67  LDQDDALLGSYPVDDGCRIHVIDHSGARLGEYEDISKVEKYEISQEAYEQRQDSIRSFLK 126

Query: 132 KQKEERLRREALLKENNEEKDKCLEENI-LKDIEVGKRCKINDS--DVRFGTVMFVGETK 188
           + K  R   E   ++  E   + +EE      I VG RC++       R GTVM+VG T 
Sbjct: 127 RNKLGRFNEEERAQQEAENSQRLIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD 186

Query: 189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           F  G W+G++ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP
Sbjct: 187 FKPGYWIGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFP 235

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer. Involved in regulation of tubulin heterodimer dissociation. May function as a negative regulator of axonal growth.

Bos taurus (taxid: 9913)

>sp|Q20728|TBCB_CAEEL Tubulin-specific chaperone B OS=Caenorhabditis elegans GN=F53F4.3 PE=1 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 117/219 (53%), Gaps = 14/219 (6%)

Query: 35  KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94
           KK     ++ +LK+KLEL+ G    +M I L++ +  L   L+D +  L    V +   +
Sbjct: 20  KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 79

Query: 95  F---VEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEK 151
               V G       ES   KY + ++ Y +  ++++ +  K +EE+    A   EN  +K
Sbjct: 80  HAVDVTGGNEDFKDESMVEKYEMSDDTYGKRTDSVRAWKKKMQEEQ--GSAAPMENESDK 137

Query: 152 DKCLEENILKDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGT 209
              L E   K+I VG RC++       R G V +VG TKF  GVWVGVK DEP GKN+G+
Sbjct: 138 ---LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGS 194

Query: 210 VKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDELDEI 248
           V  V+YF+C+  YG FV+P  + +GDFP L     +DEI
Sbjct: 195 VAGVRYFDCDPKYGGFVRPVDVKVGDFPEL----SIDEI 229

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54Z01|TBCB_DICDI Tubulin-specific chaperone B OS=Dictyostelium discoideum GN=tbcb PE=3 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 117/240 (48%), Gaps = 20/240 (8%)

Query: 15  GTVELYITNSKDKHES--CLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRN--H 70
           G V L IT+S    ES    N K   L+  I + K+KL    G     M + L + N  +
Sbjct: 30  GNVRLEITHSVLTGESLGTNNFKNFSLDLKIKDFKEKLYRFVGTEPKYMELILRDENKVN 89

Query: 71  DLVSHLSDNSMLLGQYPVENEMTLFV---EGNYLTDGLE--SSETKYVLPEEKYKEHKEN 125
           D+     D+   LG Y  ++ M + +   + N     L+  S   K V+ EE Y + +  
Sbjct: 90  DICKIDDDDDKTLGSYEPKDGMNVHIIDKDPNNFVSELQDISKAPKPVISEEDYNKREGT 149

Query: 126 LKNFMMKQKEERLRREALLKENNEEKDKCLEENILK---DIEVGKRCKI-----NDSDVR 177
            K +   ++E +L++E                N      +I+VG RCK+      + D R
Sbjct: 150 YKKW---KEENQLKKENDTTATTVTATTTTTNNATDTEIEIKVGDRCKVISDDPTNYDER 206

Query: 178 FGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
            G V +VG  +FSSGVW+GV+LD P GKN+G+VK  +YF+C   YG F KP  + +GD+P
Sbjct: 207 LGKVQYVGTVEFSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYP 266

Binds to alpha-tubulin folding intermediates after their interaction with cytosolic chaperonin in the pathway leading from newly synthesized tubulin to properly folded heterodimer.

Dictyostelium discoideum (taxid: 44689)

>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1 PE=1 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
           +E  + D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+Y
Sbjct: 51  QEEFVDDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRY 108

Query: 216 FECEENYGMFVKPGRLT 232
           F+CE   G+F +P +LT
Sbjct: 109 FQCEPLKGIFTRPSKLT 125

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Mus musculus (taxid: 10090)

>sp|P30622|CLIP1_HUMAN CAP-Gly domain-containing linker protein 1 OS=Homo sapiens GN=CLIP1 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 2/77 (2%)

Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
           +E  + D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+Y
Sbjct: 51  QEEFVDDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRY 108

Query: 216 FECEENYGMFVKPGRLT 232
           F+CE   G+F +P +LT
Sbjct: 109 FQCEPLKGIFTRPSKLT 125

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Homo sapiens (taxid: 9606)

>sp|O42184|CLIP1_CHICK CAP-Gly domain-containing linker protein 1 OS=Gallus gallus GN=CLIP1 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE  
Sbjct: 58  DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 115

Query: 222 YGMFVKPGRLT 232
            G+F +P +L+
Sbjct: 116 RGIFTRPSKLS 126

Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.

Gallus gallus (taxid: 9031)

>sp|P13496|DCTN1_DROME Dynactin subunit 1 OS=Drosophila melanogaster GN=Gl PE=1 SV=2

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
           K+++VG R ++   D+  GTV +VG T F+ G WVGV LDEP GKN+G++K  +YF+C+E
Sbjct: 4   KNLKVGARVELTGKDL-LGTVAYVGMTSFAVGKWVGVVLDEPKGKNSGSIKGQQYFQCDE 62

Query: 221 NYGMFVKPGRLTI 233
           N GMFV+P +L +
Sbjct: 63  NCGMFVRPTQLRL 75

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Drosophila melanogaster (taxid: 7227)

>sp|Q01397|DYNA_NEUCR Dynactin, 150 kDa isoform OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ro-3 PE=3 SV=3

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 48/71 (67%)

Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
           + VG++ ++ D   R   V +VGET F+ G WVG++LDEP GKN+G+V+  +YF CE  Y
Sbjct: 6   VAVGQKIELADGSGRTAFVRYVGETAFAPGTWVGIELDEPSGKNDGSVQGERYFNCEMGY 65

Query: 223 GMFVKPGRLTI 233
           GMFV+P    +
Sbjct: 66  GMFVRPTTFNV 76

Required for the cytoplasmic dynein-driven retrograde movement of vesicles and organelles along microtubules. Dynein-dynactin interaction is a key component of the mechanism of axonal transport of vesicles and organelles.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
291243710	249	PREDICTED: CG11242-like [Saccoglossus ko	0.850	0.847	0.394	4e-36
156536995	243	PREDICTED: tubulin-folding cofactor B-li	0.915	0.934	0.402	6e-36
91077476	241	PREDICTED: similar to predicted protein	0.870	0.896	0.4	9e-36
318101558	246	tubulin-folding cofactor B [Ictalurus pu	0.790	0.796	0.433	7e-35
348534729	246	PREDICTED: tubulin-folding cofactor B-li	0.790	0.796	0.394	3e-34
149722008	244	PREDICTED: tubulin-folding cofactor B-li	0.883	0.897	0.366	1e-33
332376531	241	unknown [Dendroctonus ponderosae]	0.806	0.829	0.396	2e-33
350539413	241	uncharacterized protein LOC100169239 [Ac	0.903	0.929	0.374	1e-32
12845883	244	unnamed protein product [Mus musculus]	0.883	0.897	0.371	2e-32
239789462	241	ACYPI009877 [Acyrthosiphon pisum]	0.903	0.929	0.370	2e-32

>gi|291243710|ref|XP_002741744.1| PREDICTED: CG11242-like [Saccoglossus kowalevskii]

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/238 (39%), Positives = 139/238 (58%), Gaps = 27/238 (11%)

Query: 17  VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL 76
           V + IT+S     S  + ++   +  IGELK KLEL+TG  ++ M + ++++N  L+  L
Sbjct: 12  VTVQITSS---ATSFASERRFPKSIRIGELKGKLELITGCSTAGMLLEVFDKNDKLIVKL 68

Query: 77  SDNSMLLGQYPVENEMTLFVEGNYLTDGL---ESSETKYVLPEEKYKEHKENLKNFMMKQ 133
           SD+  +LG YPV++ M + V     T G     S   K+ L +E+Y +  +++  F  K 
Sbjct: 69  SDDIAMLGSYPVDDGMRIHVHDPTQTVGAFEDVSKVEKFELSKEEYSKRSDSVLAFKKKM 128

Query: 134 K-----------EERLRREALLKENNEEKDKCLEENILKDIEVGKRCKINDS---DVRFG 179
           K           + RL +EA  K  NE+K       +   I+VG RC++N+     V+ G
Sbjct: 129 KMGQFAEVDEEEKARLEKEAQEKLENEKK-------LADQIKVGSRCEVNNPKNPPVKRG 181

Query: 180 TVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           TVM+VG T+FSSG+WVGVK DEP GKN+G+VK  +YFEC+  YG FVKP  +T+GDFP
Sbjct: 182 TVMYVGTTEFSSGLWVGVKYDEPLGKNDGSVKGKRYFECQMKYGGFVKPAHITVGDFP 239

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|156536995|ref|XP_001608286.1| PREDICTED: tubulin-folding cofactor B-like [Nasonia vitripennis]

 Score =  156 bits (395), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 9/236 (3%)

Query: 8   MDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN 67
           MD  + G    +    +   +ES    ++ K + TI E K KLELL G  S +M + +YN
Sbjct: 1   MDTYNSGSANFVNFVVTSANNESYSVERRFKKDITIQEFKDKLELLVGYQSKSMGLEVYN 60

Query: 68  RNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLK 127
           +N DLV  LS+N   LG YPVE+ M + V G+       ++  K+ L EE+Y +    +K
Sbjct: 61  KNDDLVCKLSENGKELGSYPVEDGMRVHVIGDVEPTDDPAAVEKFELSEEEYSKRSSTVK 120

Query: 128 NFMMKQKEERLRR----EALLKENNEEKDKCLEENILKDIEVGKRCKI--NDSDVRFGTV 181
           +F+   KE +L +    E   KE   +++   EE ++  ++VG RC++    +  R  TV
Sbjct: 121 SFL---KENKLGKYNEEETKKKEEERQRELENEERLINSMKVGDRCEVIVPGNPKRRATV 177

Query: 182 MFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           M++G+T+F SG WVGVK DEPFGKNNGTV   KYFEC + YG FVKP  + +GDFP
Sbjct: 178 MYLGKTEFKSGWWVGVKFDEPFGKNNGTVAGKKYFECPDKYGGFVKPASIVLGDFP 233

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077476|ref|XP_968339.1| PREDICTED: similar to predicted protein [Tribolium castaneum] gi|270001614|gb|EEZ98061.1| hypothetical protein TcasGA2_TC000467 [Tribolium castaneum]

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%)

Query: 17  VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL 76
           V L+I+ SKD  +     K+   + TI +LK KLEL+TG   + M I  YN+++  +  L
Sbjct: 12  VRLHISTSKD--DVSFEEKRFPKDITISDLKAKLELITGGNCNTMQIEAYNKDNKHICSL 69

Query: 77  SDNSMLLGQYPVENEMTLFVEGNY-LTDGLESSET-KYVLPEEKYKEHKENLKNFMMKQK 134
           S+N  LLG YP+++ M L V   + + + L+  +  KY LPEE+Y +  +++K F+MK K
Sbjct: 70  SNNEALLGSYPLDDGMRLHVIDQFNIRNELDFGDVPKYELPEEEYNKKTDSVKAFLMKNK 129

Query: 135 EERLRREALLKENNEEKDKCLEENILKDIEVGKRCKIN--DSDVRFGTVMFVGETKFSSG 192
             +   E + K+   EK    E+ + +   +G RCK+   ++  R GTVM+ G  +   G
Sbjct: 130 MGQYNEENIKKK---EKQMSEEKQLAESTPIGSRCKVTVANAPCRLGTVMYTGPVETLPG 186

Query: 193 VWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
            W+GVK DEP GKN+GT K  KYFEC  NYG FVKP  +  GDFP
Sbjct: 187 YWIGVKYDEPLGKNDGTFKGKKYFECANNYGAFVKPHNVECGDFP 231

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318101558|ref|NP_001187385.1| tubulin-folding cofactor B [Ictalurus punctatus] gi|308322875|gb|ADO28575.1| tubulin-folding cofactor b [Ictalurus punctatus]

 Score =  153 bits (386), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 114/203 (56%), Gaps = 7/203 (3%)

Query: 42  TIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV--EGN 99
           TI ELK KLEL+ G  +++M + L++ +   + +L DN  LLG YPV++   L V     
Sbjct: 35  TIAELKCKLELIIGCPAASMDLQLFSSSDKFLQNLDDNDALLGSYPVDDNCRLHVIDRSG 94

Query: 100 YLTDGLE--SSETKYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEE 157
            LT      S   KY +PE+ Y +  ++++NF    K  R   E   K       K  EE
Sbjct: 95  SLTGAFSDLSQVEKYEIPEDAYDKRSDSVRNFKRNMKIGRFNEETAAKREETLSQKEEEE 154

Query: 158 NI-LKDIEVGKRC--KINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVK 214
           N  L  I VGKRC  K+     + GTVMFVG T F  G WVGVK DEP GKN+G+V   +
Sbjct: 155 NAALALITVGKRCQVKVVGQPTKIGTVMFVGTTDFKPGHWVGVKYDEPLGKNDGSVNGKR 214

Query: 215 YFECEENYGMFVKPGRLTIGDFP 237
           YFECE  YG FVKP  +T+GDFP
Sbjct: 215 YFECEPKYGAFVKPLFVTVGDFP 237

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348534729|ref|XP_003454854.1| PREDICTED: tubulin-folding cofactor B-like [Oreochromis niloticus]

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 119/203 (58%), Gaps = 7/203 (3%)

Query: 42  TIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV---EG 98
           +I ELK KLE++ G  +S M + L++ +   +  + +N  LLG YPV+++  + V    G
Sbjct: 35  SIAELKGKLEMIVGAPASCMDLELFSISDKFLQKMDENEALLGSYPVDDDCRIHVVDRSG 94

Query: 99  NYLTDGLESSET-KYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKDKCLEE 157
             + +  + S+  K+ LP++ Y +  +  ++FM KQ+  R   E + K+  E   +  E+
Sbjct: 95  GQMGEFTDVSKVEKFELPDDAYDKRTDTARSFMKKQRVGRFNEEEMAKKKAENAAREEEQ 154

Query: 158 NILKD-IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVK 214
               D I VG RCK+       + GTVM+VG T F  G WVGVK DEP GK+NGTV+  +
Sbjct: 155 KAAADAIAVGGRCKVQVPGQPTKLGTVMYVGTTDFKPGYWVGVKYDEPLGKHNGTVEGKQ 214

Query: 215 YFECEENYGMFVKPGRLTIGDFP 237
           YFECE  YG FVKP  +T+GDFP
Sbjct: 215 YFECENKYGAFVKPLSVTVGDFP 237

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149722008|ref|XP_001493874.1| PREDICTED: tubulin-folding cofactor B-like [Equus caballus]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 16  TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
           TV ++I++S +   S    K+   + TI E K KLEL+ G  +S M + LY  +      
Sbjct: 10  TVTVFISSSLNSFRS---QKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYGK 66

Query: 76  LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSETK-YVLPEEKYKEHKENLKNFMM 131
           L     LLG YPV++   + V    G  L +  + S+ K Y +PEE Y + ++++++F+ 
Sbjct: 67  LDQEDALLGSYPVDDGCRIHVIDHSGARLGEFEDVSKVKKYSIPEEAYDQRQDSVRSFLK 126

Query: 132 KQKEERLRREALLKENNEEKDKCLEENI-LKDIEVGKRCKINDS--DVRFGTVMFVGETK 188
           + K  R   E   ++  E   +  EE      I VG RC++       R GTVM+VG T 
Sbjct: 127 RSKLGRYSEEEQAQQKAENSQRLTEEKAQASAIPVGSRCEVRAPGQPPRRGTVMYVGLTD 186

Query: 189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           F  G W+GV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP
Sbjct: 187 FKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFP 235

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332376531|gb|AEE63405.1| unknown [Dendroctonus ponderosae]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 122/207 (58%), Gaps = 7/207 (3%)

Query: 35  KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL 94
           K+   + TI +LK KLEL TG     M I LYN+++ LV+ L D+S +LG YPVE+ M L
Sbjct: 28  KRFPKDLTISDLKAKLELTTGGSCQTMKIELYNKDNKLVASLDDDSQVLGFYPVEDGMRL 87

Query: 95  FVEGNYLTDGLESSE--TKYVLPEEKYKEHKENLKNFMMKQKEERLRREALLKENNEEKD 152
            V   +L      +E   K+ L E++Y +  + +K F+M+ K  +   + +    N+E+ 
Sbjct: 88  HVVDKFLLTNEFDAENVPKFELSEDEYAKRGDTVKTFLMRNKMGKYNDDYM---KNKEQQ 144

Query: 153 KCLEENILKDIEVGKRCKINDSDV--RFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTV 210
           +  E+ +   I+VG RCK+  S+V  + GTVM+ G      G W+G+K DEP GK+NGTV
Sbjct: 145 EAQEKALADSIKVGSRCKVTVSNVPTKLGTVMYSGNVDGLQGTWIGIKYDEPVGKHNGTV 204

Query: 211 KDVKYFECEENYGMFVKPGRLTIGDFP 237
           K   YF+C + YG  VKP  + +GDFP
Sbjct: 205 KGKSYFQCPDKYGGLVKPQCVEVGDFP 231

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350539413|ref|NP_001232946.1| uncharacterized protein LOC100169239 [Acyrthosiphon pisum] gi|239789466|dbj|BAH71358.1| ACYPI009877 [Acyrthosiphon pisum]

 Score =  146 bits (368), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/235 (37%), Positives = 136/235 (57%), Gaps = 11/235 (4%)

Query: 17  VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL 76
           +E+YI     + E  +N ++ +   T+ +LK KLE++TG+ +  M +S Y+++  LV+ L
Sbjct: 12  LEVYICTKLSEPE--INTRRYRKGMTVNDLKNKLEMITGRSAGTMILSAYDKDK-LVAKL 68

Query: 77  SDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEE 136
            D+   LG YPVEN M L V+        + +   Y + EE+Y   +E LK+F+   K  
Sbjct: 69  DDDDSQLGSYPVENGMFLLVDDPAYETSDQDAIDGYKMTEEEYNAKQETLKSFLKNNKLG 128

Query: 137 RLRREALLKENNEEKDKCLEENILKD----IEVGKRC--KINDSDVRFGTVMFVGETKFS 190
           +   E L +   E  +K  +EN+ K+    +EVG+RC  ++ +   ++GTVM+ G     
Sbjct: 129 KYNPEYLKQREQENLEKEQQENMEKEQIDKMEVGQRCCIRLPNKPAQYGTVMYKGRLDDK 188

Query: 191 SGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDEL 245
           SG WVGVK DEP+GK++G++   +YFE    YG FV P  + IGDFPVLD  DEL
Sbjct: 189 SGYWVGVKYDEPYGKHDGSLNGKQYFETLPKYGSFVTPSAVEIGDFPVLD--DEL 241

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|12845883|dbj|BAB26939.1| unnamed protein product [Mus musculus]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 10/229 (4%)

Query: 16  TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
           TV ++I++S +   S    K+   + TI E K KLEL+ G  +S M + LY  +    S 
Sbjct: 10  TVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSK 66

Query: 76  LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
           L     LLG YPV++  ++ V    G  L +  + S+  KY +  E Y+  +  +++FM 
Sbjct: 67  LDQEDALLGSYPVDDGCSIHVIDHSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMK 126

Query: 132 KQKEERLRREALLKENNEEKDKCLEENI-LKDIEVGKRCKIN--DSDVRFGTVMFVGETK 188
           + K      E   ++  E   +  EE      I VG RC++   D  +R GTVM+VG T 
Sbjct: 127 RSKLGPYNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD 186

Query: 189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           F  G WVGV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP
Sbjct: 187 FKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDFP 235

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|239789462|dbj|BAH71356.1| ACYPI009877 [Acyrthosiphon pisum]

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 135/235 (57%), Gaps = 11/235 (4%)

Query: 17  VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL 76
           +E+YI     + E  +N ++ +   T+ +LK KLE++TG+ +  M +S Y+++  LV+ L
Sbjct: 12  LEVYICTKLSEPE--INTRRYRKGMTVNDLKNKLEMITGRSAGTMILSAYDKDK-LVAKL 68

Query: 77  SDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEEKYKEHKENLKNFMMKQKEE 136
            D+   LG YPVEN M L V+        + +   Y + EE+Y   +E LK+F+   K  
Sbjct: 69  DDDDSQLGSYPVENGMFLLVDDPAYKTSDQDAIDGYKMTEEEYNAKQETLKSFLKNNKLG 128

Query: 137 RLRREALLKENNEEKDKCLEENILKD----IEVGKRC--KINDSDVRFGTVMFVGETKFS 190
           +   E L +   E  +K  +EN+ K+    +EVG+RC  ++ +   ++GTVM+ G     
Sbjct: 129 KYNPEYLKQREQENLEKEQQENMEKEQIDKMEVGQRCCIRLPNKPAQYGTVMYKGRLDDK 188

Query: 191 SGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDEL 245
           SG WVGVK DEP+GK++G++   +YFE    YG FV P  + IGDFPV D  DEL
Sbjct: 189 SGYWVGVKYDEPYGKHDGSLNGKQYFETLPKYGSFVTPSAVEIGDFPVFD--DEL 241

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
MGI|MGI:1913661	244	Tbcb "tubulin folding cofactor	0.915	0.930	0.344	6.2e-30
UNIPROTKB|Q99426	244	TBCB "Tubulin-folding cofactor	0.919	0.934	0.341	1.6e-29
ZFIN|ZDB-GENE-030131-9296	246	tbcb "tubulin folding cofactor	0.822	0.829	0.344	5.6e-29
UNIPROTKB|Q5E951	244	TBCB "Tubulin-folding cofactor	0.915	0.930	0.315	2.4e-28
RGD|1309965	244	Tbcb "tubulin folding cofactor	0.915	0.930	0.331	3.9e-28
UNIPROTKB|Q8HXL4	244	CKAP1 "Uncharacterized protein	0.915	0.930	0.319	5e-28
FB|FBgn0034451	271	TBCB "tubulin-binding cofactor	0.334	0.306	0.430	7.1e-25
CGD|CAL0005089	282	orf19.2828 [Candida albicans (	0.741	0.652	0.317	3.9e-24
DICTYBASE|DDB_G0277983	270	tbcB "tubulin folding cofactor	0.899	0.825	0.303	1.8e-23
TAIR|locus:2076224	243	EMB2804 "AT3G10220" [Arabidops	0.919	0.938	0.288	2.1e-22

MGI|MGI:1913661 Tbcb "tubulin folding cofactor B" [Mus musculus (taxid:10090)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 82/238 (34%), Positives = 116/238 (48%)

Query:    16 TVELYITNSKDKHESCXXXXXXXXXXTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
             TV ++I++S +   S           TI E K KLEL+ G  +S M + LY  +    S 
Sbjct:    10 TVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSK 66

Query:    76 LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
             L     LLG YPV++   + V    G  L +  + S+  KY +  E Y+  +  +++FM 
Sbjct:    67 LDQEDALLGSYPVDDGCRIHVIDHSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMK 126

Query:   132 KQXXXXXXXXXXXXXXXXXXXXXXXXXILKD-IEVGKRCKIN--DSDVRFGTVMFVGETK 188
             +                               I VG RC++   D  +R GTVM+VG T 
Sbjct:   127 RSKLGPYNEELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD 186

Query:   189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLD-PFDEL 245
             F  G WVGV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP  D   DE+
Sbjct:   187 FKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDFPEEDYGLDEM 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

UNIPROTKB|Q99426 TBCB "Tubulin-folding cofactor B" [Homo sapiens (taxid:9606)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 82/240 (34%), Positives = 117/240 (48%)

Query:    16 TVELYITNSKDKHESCXXXXXXXXXXTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
             TV ++I++S +   S           TI E K KLELL G  +S M + LY  +    S 
Sbjct:    10 TVTVFISSSLNTFRS---EKRYSRSLTIAEFKCKLELLVGSPASCMELELYGVDDKFYSK 66

Query:    76 LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
             L     LLG YPV++   + V    G  L +  + S   KY + +E Y + ++ +++F+ 
Sbjct:    67 LDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDVSRVEKYTISQEAYDQRQDTVRSFLK 126

Query:   132 KQXXXXXXXXXXXXXXXXXXXXXXXXXI-LKDIEVGKRCKINDS--DVRFGTVMFVGETK 188
             +                               I VG RC++  +    R GTVM+VG T 
Sbjct:   127 RSKLGRYNEEERAQQEAEAAQRLAEEKAQASSIPVGSRCEVRAAGQSPRRGTVMYVGLTD 186

Query:   189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFDELDEI 248
             F  G W+GV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP  D    LDEI
Sbjct:   187 FKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPAVVTVGDFPEEDY--GLDEI 244

GO:0005874 "microtubule" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-030131-9296 tbcb "tubulin folding cofactor B" [Danio rerio (taxid:7955)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 73/212 (34%), Positives = 106/212 (50%)

Query:    42 TIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNYL 101
             TI E K KLEL+ G  +S M + L++ +   +  L +N  LLG Y V+++  + V     
Sbjct:    35 TIAEFKSKLELIVGTPASCMDLDLFSSSDKFLQKLDNNEALLGSYHVDDDCRIHVTDRSG 94

Query:   102 TDGLE----SSETKYVLPEEKYKEHKENLKNFMMKQXXXXXXXXXXXXXXXXXXXXXXXX 157
             T   E    S   K+ + +E Y++  ++++NF                            
Sbjct:    95 TQSGEFTDLSKVEKFEISDEAYEKRADSIRNFKKNMKLGRFNEEERAKQEEAVAKKEEEE 154

Query:   158 XILKD-IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVK 214
              +  + I VG RCK+       + GTVM+VG   F  G WVGVK DEP GK++G+V   +
Sbjct:   155 KVAAEAIAVGNRCKVQVPGQATKIGTVMYVGTADFKPGYWVGVKYDEPLGKHDGSVNGKR 214

Query:   215 YFECEENYGMFVKPGRLTIGDFPVLD-PFDEL 245
             YFECE  YG FVKP  +T+GDFP  D   DE+
Sbjct:   215 YFECEPKYGAFVKPLTVTVGDFPEEDYGLDEM 246

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5E951 TBCB "Tubulin-folding cofactor B" [Bos taurus (taxid:9913)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 75/238 (31%), Positives = 118/238 (49%)

Query:    16 TVELYITNSKDKHESCXXXXXXXXXXTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
             TV ++I++S +   S           T+ E K KL+L+ G  +S M + LY  +      
Sbjct:    10 TVNVFISSSLNSFRS---QKRYSRSLTVAEFKCKLQLVVGSPASCMELELYGPDDKFCCK 66

Query:    76 LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
             L  +  LLG YPV++   + V    G  L +  + S+  KY + +E Y++ ++++++F+ 
Sbjct:    67 LDQDDALLGSYPVDDGCRIHVIDHSGARLGEYEDISKVEKYEISQEAYEQRQDSIRSFLK 126

Query:   132 KQXXXXXXXXXXXXXXXXXXXXXXXXXI-LKDIEVGKRCKIND--SDVRFGTVMFVGETK 188
             +                               I VG RC++       R GTVM+VG T 
Sbjct:   127 RNKLGRFNEEERAQQEAENSQRLIEEEAQASTIPVGSRCEVRTPGQPPRRGTVMYVGLTD 186

Query:   189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLD-PFDEL 245
             F  G W+G++ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP  D   DE+
Sbjct:   187 FKPGYWIGIRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFPEEDYGLDEM 244

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0030154 "cell differentiation" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

RGD|1309965 Tbcb "tubulin folding cofactor B" [Rattus norvegicus (taxid:10116)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 79/238 (33%), Positives = 113/238 (47%)

Query:    16 TVELYITNSKDKHESCXXXXXXXXXXTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
             TV ++I++S +   S           TI E K KLEL+ G  +S M + LY  +    S 
Sbjct:    10 TVTVFISSSLNSFRS---EKRYSRSPTIAEFKCKLELVVGSPASCMELELYGADDQFYSK 66

Query:    76 LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
             L     LLG YPV++   + V    G  L +  + S+  KY +  E Y+  +  +++FM 
Sbjct:    67 LDQEDALLGSYPVDDGCRIHVIDHSGVRLGEYEDVSKVEKYEISPEAYERRQNTVRSFMK 126

Query:   132 KQXXXXXXXXXXXXXXXXXXXXXXXXXILKD-IEVGKRCKIN--DSDVRFGTVMFVGETK 188
             +                               I VG RC++      +  GTVM+VG T 
Sbjct:   127 RSKLGPYNEELRAQQEAEAAQRLSEEEAQASAISVGSRCEVRAPGQSLHRGTVMYVGLTD 186

Query:   189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLD-PFDEL 245
             F  G WVGV+  EP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP  D   DE+
Sbjct:   187 FKPGYWVGVRYGEPLGKNDGSVNGKRYFECQARYGAFVKPAAVTVGDFPEEDYGLDEM 244

GO:0005737 "cytoplasm" evidence=ISO

UNIPROTKB|Q8HXL4 CKAP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 76/238 (31%), Positives = 115/238 (48%)

Query:    16 TVELYITNSKDKHESCXXXXXXXXXXTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
             TV ++I++S +   S           T+ E K KL+L+ G  +S M + LY  +      
Sbjct:    10 TVTVFISSSLNSFRS---QKRYSRSLTVAEFKDKLQLVVGSPASCMELELYGPDDKFYVK 66

Query:    76 LSDNSMLLGQYPVENEMTLFV---EGNYLTDGLESSET-KYVLPEEKYKEHKENLKNFMM 131
             L     LLG YPV++   + V    G  L +  + S+  KY + +E Y + + ++++F+ 
Sbjct:    67 LDQEDALLGSYPVDDGCRIHVIDHSGARLGEYEDMSKVEKYKISQEAYDQRQNSVRSFLK 126

Query:   132 KQXXXXXXXXXXXXXXXXXXXXXXXXXILKD-IEVGKRCKIN--DSDVRFGTVMFVGETK 188
             +                               I VG RC++       R GTVM+VG T 
Sbjct:   127 RNKLGRYNEEERAQREAESSQRLIEEEAQASAIPVGSRCEVRAPGQPPRRGTVMYVGLTD 186

Query:   189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLD-PFDEL 245
             F  G W+GV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GDFP  D   DE+
Sbjct:   187 FKPGYWIGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSVVTVGDFPEEDYGLDEM 244

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0034451 TBCB "tubulin-binding cofactor B" [Drosophila melanogaster (taxid:7227)]

 Score = 177 (67.4 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
 Identities = 37/86 (43%), Positives = 52/86 (60%)

Query:   165 VGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
             +G RC++    +  R GT+ + G  +  SG ++GV+ DEP GKNNG+     YF C  NY
Sbjct:   187 LGGRCEVTVPGNPTRRGTIRYNGPLEGKSGHFIGVEYDEPLGKNNGSFGGKAYFTCAPNY 246

Query:   223 GMFVKPGRLTIGDFPVLDPFDELDEI 248
             G FV P  +T+GDFP  D F+  DE+
Sbjct:   247 GGFVSPLSVTVGDFPPED-FNMDDEL 271

GO:0005856 "cytoskeleton" evidence=ISS

GO:0005938 "cell cortex" evidence=IDA

GO:0035089 "establishment of apical/basal cell polarity" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0007309 "oocyte axis specification" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

CGD|CAL0005089 orf19.2828 [Candida albicans (taxid:5476)]

 Score = 233 (87.1 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 62/195 (31%), Positives = 101/195 (51%)

Query:    59 SNMTISLYNRNHDLVSHL-SDNSMLLGQYPVENEMTLFVEGNYLTDGLESSETKYVLPEE 117
             S++ +  Y+R H + S   SD + L  Q+    E     E + + +G  +  T++ L EE
Sbjct:    80 SSLNLQSYSRIHVIDSDPNSDVNKLQQQHQQHQEEE--EEKSEIEEGDVAGFTEFQLSEE 137

Query:   118 KYKEHKENLKNFMMKQXXXXXXXXXXXXXXXXXXXXXXXXXILKDIEVGKRCK-IN-DSD 175
              YK  + ++ N+  K+                          LK + +G RC+ IN +++
Sbjct:   138 DYKTRQNSVLNW--KKINKLGRFDPQFQSLQEKLHHETEMK-LKTMSIGSRCRLINIENN 194

Query:   176 VRFGTVMFVGETK-FSSGV--WVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232
              R G + F+G+     +G   WVG++ DEP GKNNG++  VK FEC+ N+G FV+P  + 
Sbjct:   195 ERRGIIRFIGKIMPLDNGENDWVGIEFDEPVGKNNGSIDGVKIFECKPNHGSFVRPRLVE 254

Query:   233 IGDFPVLDPFDELDE 247
             +GDFP LDPF + D+
Sbjct:   255 VGDFPELDPFADDDD 269

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

DICTYBASE|DDB_G0277983 tbcB "tubulin folding cofactor B" [Dictyostelium discoideum (taxid:44689)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 72/237 (30%), Positives = 109/237 (45%)

Query:    15 GTVELYITNSKDKHESCXXXXXXXXXXT--IGELKQKLELLTGQMSSNMTISLYNRN--H 70
             G V L IT+S    ES              I + K+KL    G     M + L + N  +
Sbjct:    30 GNVRLEITHSVLTGESLGTNNFKNFSLDLKIKDFKEKLYRFVGTEPKYMELILRDENKVN 89

Query:    71 DLVSHLSDNSMLLGQYPVENEMTLFV----EGNYLTDGLESSET-KYVLPEEKYKEHKEN 125
             D+     D+   LG Y  ++ M + +      N++++  + S+  K V+ EE Y + +  
Sbjct:    90 DICKIDDDDDKTLGSYEPKDGMNVHIIDKDPNNFVSELQDISKAPKPVISEEDYNKREGT 149

Query:   126 LKNFMMKQXXXXXXXXXXXXXXXXXXXXXXXXXILKDIEVGKRCK-INDS----DVRFGT 180
              K +  +                             +I+VG RCK I+D     D R G 
Sbjct:   150 YKKWKEENQLKKENDTTATTVTATTTTTNNATDTEIEIKVGDRCKVISDDPTNYDERLGK 209

Query:   181 VMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
             V +VG  +FSSGVW+GV+LD P GKN+G+VK  +YF+C   YG F KP  + +GD+P
Sbjct:   210 VQYVGTVEFSSGVWIGVELDLPLGKNDGSVKGKQYFQCSPKYGCFAKPKNVLVGDYP 266

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2076224 EMB2804 "AT3G10220" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 71/246 (28%), Positives = 121/246 (49%)

Query:    11 MDGGGTVELYITNSKDKHESCXXXXXXXXXXTIGELKQKLELLTGQMSSNMTISLYNRNH 70
             ++G  +V L+IT++  K  S           ++  +K+KL    G   ++M + LY+ + 
Sbjct:     8 LEGDDSVHLHITHANLK--SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSG 65

Query:    71 DLVSHLSDNSMLLGQYPVENEMTLFV---EGNYLTDG--LESSET--KYVLPEEKYKEHK 123
               V+ LSD+S  LG +   +   L +   + + +T G  LE +    KY + EE Y +  
Sbjct:    66 SKVAVLSDDSRPLGFFSPFDGFRLHIIDLDPSSVTTGGWLEDTSLVEKYNISEEDYAKRT 125

Query:   124 ENLKNFMMKQXXXXXXXXXXXXXXXXXXXXXXXXXILKDIEVGKRCKINDSDVRFGTVMF 183
             ++ + F  K+                         +  +I+VG RC++   + R G V +
Sbjct:   126 DSFRKFKEKRVSQNPVAAEAKTKENYMED------LCANIKVGDRCQVEPGEKR-GMVKY 178

Query:   184 VGETK-FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPF 242
             VG  +    G WVG++ DEP GK++G VK  ++FEC    G  V+P ++ +GD+P  DPF
Sbjct:   179 VGRAESLGPGYWVGIQYDEPLGKHDGMVKGTRFFECPRLQGGMVRPDKVKVGDYPERDPF 238

Query:   243 DELDEI 248
             +E DEI
Sbjct:   239 EE-DEI 243

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0051301 "cell division" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20728	TBCB_CAEEL	No assigned EC number	0.3607	0.8266	0.8951	yes	N/A
Q9D1E6	TBCB_MOUSE	No assigned EC number	0.3711	0.8830	0.8975	yes	N/A
Q99426	TBCB_HUMAN	No assigned EC number	0.3668	0.8830	0.8975	yes	N/A
Q5E951	TBCB_BOVIN	No assigned EC number	0.3449	0.8830	0.8975	yes	N/A
Q54Z01	TBCB_DICDI	No assigned EC number	0.325	0.8870	0.8148	yes	N/A
Q10235	ALP11_SCHPO	No assigned EC number	0.2382	0.8669	0.9188	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	248
pfam01302	67	pfam01302, CAP_GLY, CAP-Gly domain	7e-31
smart01052	68	smart01052, CAP_GLY, Cytoskeleton-associated prote	7e-28
COG5244	669	COG5244, NIP100, Dynactin complex subunit involved	3e-13
cd01789	84	cd01789, Alp11_N, Ubiquitin-like domain of Alp11 t	4e-10

>gnl|CDD|216424 pfam01302, CAP_GLY, CAP-Gly domain

 Score =  108 bits (273), Expect = 7e-31
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 165 VGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGM 224
           VG R ++     R GTV +VG   F+ G+WVGV+LDEP GKN+G+V  V+YFEC   YG+
Sbjct: 1   VGDRVEVLGGG-RRGTVRYVGPVPFAPGLWVGVELDEPRGKNDGSVDGVRYFECPPKYGI 59

Query: 225 FVKPGRLT 232
           FV+P ++ 
Sbjct: 60  FVRPSKVE 67

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 67

>gnl|CDD|214997 smart01052, CAP_GLY, Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network

 Score =  101 bits (253), Expect = 7e-28
 Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 2/69 (2%)

Query: 165 VGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEP-FGKNNGTVKDVKYFECEENYG 223
           VG R ++     R GTV +VG T F+ GVWVGV+LDEP  GKN+G+VK V+YFEC   +G
Sbjct: 1   VGDRVEVGGGGRR-GTVRYVGPTPFAPGVWVGVELDEPLRGKNDGSVKGVRYFECPPKHG 59

Query: 224 MFVKPGRLT 232
           +FV+P ++ 
Sbjct: 60  IFVRPSKVE 68

A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 68

>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

 Score = 68.6 bits (167), Expect = 3e-13
 Identities = 30/66 (45%), Positives = 49/66 (74%), Gaps = 3/66 (4%)

Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
           + V  R  + D   +FGTV F+G+TKF  G+W+G++LD+P GKN+G+V  V+YF C++ +
Sbjct: 4   LSVNDRVLLGD---KFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRH 60

Query: 223 GMFVKP 228
           G+F++P
Sbjct: 61  GIFIRP 66

Length = 669

>gnl|CDD|176384 cd01789, Alp11_N, Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

 Score = 54.7 bits (132), Expect = 4e-10
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSH 75
          TV + IT+S D        KK     TI ELK+KLEL+ G  +S+M + L++ +  LVS 
Sbjct: 1  TVTVNITSSADSFSF---EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSK 57

Query: 76 LSDNSMLLGQYPVENEMTLFV 96
          L D+  LLG YPV++   + V
Sbjct: 58 LDDDDALLGSYPVDDGCRIHV 78

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG3206|consensus	234		100.0
PF01302	69	CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytos	99.94
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.87
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.86
KOG0971|consensus	1243		99.79
COG5244	669	NIP100 Dynactin complex subunit involved in mitoti	99.79
KOG3207|consensus	505		99.64
KOG4568|consensus	664		99.61
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.33
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.28
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.25
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.23
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.23
PTZ00044	76	ubiquitin; Provisional	99.22
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.22
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.21
KOG4568|consensus	664		99.2
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.17
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.16
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.16
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.15
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.14
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.14
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.11
KOG3556|consensus	724		99.1
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.09
KOG0241|consensus	1714		99.09
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.08
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.08
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.06
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.05
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.03
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.0
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.0
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	98.92
KOG0005|consensus	70		98.87
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	98.87
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.86
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.83
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	98.7
KOG0010|consensus	493		98.6
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	98.53
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	98.42
KOG0004|consensus	156		98.32
PLN02560	308	enoyl-CoA reductase	98.31
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.27
KOG0003|consensus	128		98.2
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.14
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.7
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.57
KOG0011|consensus	340		97.53
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.53
KOG4248|consensus	1143		97.44
KOG0001|consensus	75		97.38
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	97.28
KOG2982|consensus	418		97.2
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	97.13
KOG1872|consensus	473		96.68
KOG4495|consensus	110		96.48
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	95.68
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	95.49
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	95.19
PRK10708	62	hypothetical protein; Provisional	95.14
PF10781	62	DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSR	95.09
PTZ00243	1560	ABC transporter; Provisional	94.79
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	94.57
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	94.44
KOG3493|consensus	73		93.62
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	93.43
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	93.0
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	92.09
PF13019	162	Telomere_Sde2: Telomere stability and silencing	91.19
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	90.48
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	89.19
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	87.96
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	87.9
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	87.85
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	86.28
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	85.28
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	85.02
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	84.86
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	84.09
KOG0006|consensus	446		83.98
KOG1639|consensus	297		82.71

>KOG3206|consensus

Probab=100.00  E-value=1.4e-68  Score=458.70  Aligned_cols=218  Identities=38%  Similarity=0.646  Sum_probs=193.5

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      +|+|.|+|++..+.+   |+|+++++||.+||.||+..||++|++|+|+|++.+++.+..|+++++.|++|+..||.+||
T Consensus         1 ~v~v~Iss~~~~~~~---Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rih   77 (234)
T KOG3206|consen    1 MVRVVISSSLNDFRT---EKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIH   77 (234)
T ss_pred             CeEEEEecccccchh---hhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEE
Confidence            489999999888766   99999999999999999999999999999999999888888999999999999999999999


Q ss_pred             EEeCC------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh----hHH-h-hHHHHhhhcchhhhhhhhhhhcCCC
Q psy13905         96 VEGNY------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK----EER-L-RREALLKENNEEKDKCLEENILKDI  163 (248)
Q Consensus        96 VvD~~------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k----~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  163 (248)
                      |+|++      +.|  .|.|+||+||+|+|.+|+||||+||++++    |.+ + +.++++      +++..++.+...+
T Consensus        78 viD~~~~~~~~~~d--~s~veky~iSee~Y~qRtdSvr~~kk~~~~gryn~~~~~q~ea~~------~~~~~e~~~~~~i  149 (234)
T KOG3206|consen   78 VIDSNAQSISNTED--ESIVEKYEISEEDYLQRTDSVRRFKKKHGYGRYNAEEQAQAEAEA------KQDLAEERAQATI  149 (234)
T ss_pred             EEecCccccccccc--cccceeeecCHHHHhhhhHHHHHHHHHhcccccchhhhhHHHHHh------HHHHHHHHHhhcc
Confidence            99998      678  99999999999999999999999999998    333 2 222221      2233333344449


Q ss_pred             ccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCCCCC
Q psy13905        164 EVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDP  241 (248)
Q Consensus       164 ~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~d~  241 (248)
                      .||.||+|.  ++++|||+|||+|++++++|+||||++|||.|||||+++|+|||+|+|+||.||||..|++||||+.|+
T Consensus       150 ~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF~c~p~yGgfVrP~~V~VgdfpeeD~  229 (234)
T KOG3206|consen  150 AVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYFECAPKYGGFVRPRAVTVGDFPEEDF  229 (234)
T ss_pred             ccCCeeEEecCCCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEeeecCCccCCccccceeeecCCChhhc
Confidence            999999998  556899999999999999999999999999999999999999999999999999999999999999884


Q ss_pred             -CCc
Q psy13905        242 -FDE  244 (248)
Q Consensus       242 -~de  244 (248)
                       +||
T Consensus       230 ~~DE  233 (234)
T KOG3206|consen  230 SDDE  233 (234)
T ss_pred             cccc
Confidence             444

>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain

Probab=99.94  E-value=5e-27  Score=172.14  Aligned_cols=68  Identities=53%  Similarity=1.045  Sum_probs=60.4

Q ss_pred             cCCEEEEcCCCCceeEEEEecccC-CCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905        165 VGKRCKINDSDVRFGTVMFVGETK-FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT  232 (248)
Q Consensus       165 vG~Rv~v~~~~~~~G~vryvG~~~-~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  232 (248)
                      ||+||.|.....++|+|||+|+++ +++|.|+|||||+|.|+|||+++|+|||+|+|+||+|||+++|+
T Consensus         1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~~~~G~Fv~~~~v~   69 (69)
T PF01302_consen    1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECPPNHGIFVRPSKVE   69 (69)
T ss_dssp             TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SSTTTEEEEEGGGE-
T ss_pred             CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeCCCCEEEecHHHCC
Confidence            799999943337999999999999 68899999999999999999999999999999999999999874

The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.87  E-value=7.2e-22  Score=149.70  Aligned_cols=82  Identities=40%  Similarity=0.564  Sum_probs=74.3

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      +|+|.|+|+...+.+   ||||+++|||++||+||+.+||+||++|+|+++++.+..++.|++|.++|++|++++|++||
T Consensus         1 ~v~v~i~~~~~~~~~---ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~Ih   77 (84)
T cd01789           1 TVTVNITSSADSFSF---EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIH   77 (84)
T ss_pred             CEEEEEEeCCCceee---eEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEE
Confidence            478999987755556   99999999999999999999999999999999988776677789999999999999999999


Q ss_pred             EEeCC
Q psy13905         96 VEGNY  100 (248)
Q Consensus        96 VvD~~  100 (248)
                      |+|++
T Consensus        78 VvD~~   82 (84)
T cd01789          78 VIDVS   82 (84)
T ss_pred             EEeCC
Confidence            99974

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.86  E-value=1.6e-21  Score=148.01  Aligned_cols=82  Identities=34%  Similarity=0.524  Sum_probs=71.7

Q ss_pred             eEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEE-eCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         16 TVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLY-NRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        16 ~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~-~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      +|+|+|||+.+. +..   |+||++++||++||+||+.+||+||++|+|.++ +.++..+..+++|.++|++||+++|++
T Consensus         1 ~v~l~It~~~~~~~~~---ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~   77 (87)
T PF14560_consen    1 VVKLFITSSNSKQRSV---EKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMR   77 (87)
T ss_dssp             EEEEEEEESSSSSSEE---EEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEE
T ss_pred             CEEEEEEeCCCCCeeE---EEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCE
Confidence            589999998874 335   999999999999999999999999999999999 566667788899999999999999999


Q ss_pred             EEEEeCC
Q psy13905         94 LFVEGNY  100 (248)
Q Consensus        94 IhVvD~~  100 (248)
                      |||+|++
T Consensus        78 i~V~D~~   84 (87)
T PF14560_consen   78 IHVVDTN   84 (87)
T ss_dssp             EEEEE-T
T ss_pred             EEEEeCC
Confidence            9999975

>KOG0971|consensus

Probab=99.79  E-value=6.2e-20  Score=183.63  Aligned_cols=73  Identities=48%  Similarity=0.928  Sum_probs=68.8

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI  233 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  233 (248)
                      +..|+||.||+|.+. ..+|+|.|+|.+.|+.|.||||-||+|.|||||||+|++||+|++|||+|||++.|.+
T Consensus         3 ~r~lkvG~RVevtgk-nl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~ncG~FVr~sq~r~   75 (1243)
T KOG0971|consen    3 PRSLKVGTRVEVTGK-NLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDENCGVFVRSSQVRE   75 (1243)
T ss_pred             CccccccceEEeccC-CccceEEEecccccccCceEEEEeccccCCCCCcccceeeEecCCCcceEeehhhhHH
Confidence            457999999999975 6899999999999999999999999999999999999999999999999999999754

>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

Probab=99.79  E-value=1.2e-19  Score=172.31  Aligned_cols=68  Identities=44%  Similarity=1.019  Sum_probs=63.3

Q ss_pred             CCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCC
Q psy13905        161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRL  231 (248)
Q Consensus       161 ~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v  231 (248)
                      .-+.|||||.|.+   ..|+|||+|.+.|+.|+|+|||||.|.||||||++|+|||.|..+||+|+||..=
T Consensus         2 s~lSv~D~Vll~~---~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk~~giFir~~~~   69 (669)
T COG5244           2 SLLSVNDRVLLGD---KFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRPDDD   69 (669)
T ss_pred             ceeecCCEEEecc---ccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEEEecCCcceEEecCch
Confidence            3478999999986   5899999999999999999999999999999999999999999999999997653

>KOG3207|consensus

Probab=99.64  E-value=2.5e-16  Score=149.49  Aligned_cols=68  Identities=38%  Similarity=0.821  Sum_probs=64.3

Q ss_pred             CccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCC-CCCceeEcCeEeeecC-CCceeeEcCCCCcc
Q psy13905        163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPF-GKNNGTVKDVKYFECE-ENYGMFVKPGRLTI  233 (248)
Q Consensus       163 ~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~-GkndGs~~G~rYF~c~-~~~G~Fv~~~~v~~  233 (248)
                      .++|+||.|.+   ..|||||+|.|++.+|.|+|||||+|. |||||+++|+|||.|. |+.|+|++|.+|..
T Consensus         3 ~~IG~RvkI~~---~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~   72 (505)
T KOG3207|consen    3 MEIGTRVKIGG---EIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKF   72 (505)
T ss_pred             eeccceEEEcC---EEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCC
Confidence            57999999986   599999999999999999999999997 9999999999999998 99999999999964

>KOG4568|consensus

Probab=99.61  E-value=3.2e-16  Score=156.37  Aligned_cols=73  Identities=44%  Similarity=0.875  Sum_probs=67.5

Q ss_pred             hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905        158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT  232 (248)
Q Consensus       158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  232 (248)
                      .....+.||.+|.|.+  ..+|.|||+|+++|.+|.|+||+|++|.|||||+|.|+|||.|.+++|+|+++.+..
T Consensus        13 ~~~~~~~ig~~v~v~~--~~~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~kgif~~~~~~t   85 (664)
T KOG4568|consen   13 DDLGQFIIGRRVWVNN--VELGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYFQCEPKKGIFFRQGRGT   85 (664)
T ss_pred             hhhhhhhhcceEEecC--CcceeeeeccCcccccceeeceeeccccCCCCcccchhhhhccccccceeecccccc
Confidence            3445689999999987  489999999999999999999999999999999999999999999999999888765

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.33  E-value=2.7e-12  Score=92.78  Aligned_cols=69  Identities=14%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      |+|.|++....  .   ++++++++||.+||++|+..+|+||+.|+|.+.   |+.   | .|+.+|++|++++|++|||
T Consensus         1 i~i~vk~~g~~--~---~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~---l-~d~~~L~~~~i~~g~~l~v   68 (71)
T cd01812           1 IRVRVKHGGES--H---DLSISSQATFGDLKKMLAPVTGVEPRDQKLIFK---GKE---R-DDAETLDMSGVKDGSKVML   68 (71)
T ss_pred             CEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHhhCCChHHeEEeeC---Ccc---c-CccCcHHHcCCCCCCEEEE
Confidence            57888877443  4   799999999999999999999999999999986   665   3 4678999999999999998


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      +
T Consensus        69 ~   69 (71)
T cd01812          69 L   69 (71)
T ss_pred             e
Confidence            6

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.28  E-value=1.1e-11  Score=89.52  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      ++|+|....... .   ..+++++.||++||++|+..+|+||+.|+|.+.   |+.    .+|+.+|++|++++|++||+
T Consensus         1 i~i~vk~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~----L~d~~~L~~~~i~~~~~l~l   69 (72)
T cd01809           1 IEIKVKTLDSQT-H---TFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYS---GRV----LKDDETLSEYKVEDGHTIHL   69 (72)
T ss_pred             CEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CEE----CCCcCcHHHCCCCCCCEEEE
Confidence            467787654431 3   689999999999999999999999999999985   665    46789999999999999999


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      +-
T Consensus        70 ~~   71 (72)
T cd01809          70 VK   71 (72)
T ss_pred             Ee
Confidence            74

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.25  E-value=2e-11  Score=88.99  Aligned_cols=70  Identities=10%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|.|.+...+. .   +.+++++.||++||++|+..+|+||+.|+|++.   |+.   | .|+.+|++|++++|++||++
T Consensus         2 ~i~v~~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~---g~~---L-~d~~tl~~~~i~~g~~i~l~   70 (76)
T cd01806           2 LIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDDKTAADYKLEGGSVLHLV   70 (76)
T ss_pred             EEEEEeCCCCE-E---EEEECCCCCHHHHHHHHhHhhCCChhhEEEEEC---CeE---c-cCCCCHHHcCCCCCCEEEEE
Confidence            46677543331 4   789999999999999999999999999999965   665   4 57789999999999999997


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        71 ~   71 (76)
T cd01806          71 L   71 (76)
T ss_pred             E
Confidence            4

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.23  E-value=2.7e-11  Score=89.58  Aligned_cols=69  Identities=22%  Similarity=0.379  Sum_probs=58.9

Q ss_pred             EEEEEEeC-CCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         17 VELYITNS-KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        17 V~v~ItS~-~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      +.|.|.+- ...  .   ..+++++.||++||++|+...|+||+.|||++.   |+.    .+|+.+|++||+.+|++||
T Consensus         2 ~~i~vkt~~Gk~--~---~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~---Gk~----L~D~~tL~~ygi~~~stv~   69 (73)
T cd01791           2 IEVVCNDRLGKK--V---RVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW---YTI----FKDHISLGDYEIHDGMNLE   69 (73)
T ss_pred             EEEEEECCCCCE--E---EEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeC---CcC----CCCCCCHHHcCCCCCCEEE
Confidence            57788764 333  3   689999999999999999999999999999976   665    4677899999999999999


Q ss_pred             EE
Q psy13905         96 VE   97 (248)
Q Consensus        96 Vv   97 (248)
                      +-
T Consensus        70 l~   71 (73)
T cd01791          70 LY   71 (73)
T ss_pred             EE
Confidence            84

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.23  E-value=2.4e-11  Score=90.35  Aligned_cols=57  Identities=18%  Similarity=0.125  Sum_probs=51.3

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC-CCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE-NEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~-dG~~IhVv   97 (248)
                      ...+++++||++||+||+..+||||++||| +.   |+.   |.+|.++|++|+++ +|.++|+-
T Consensus        16 ~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~---G~~---L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799          16 WLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VI---GQR---LARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             EEEECCCCcHHHHHHHHHHHHCcCHHHEEE-Ec---CCe---eCCCcCCHHHcCCCCCCCEEEEE
Confidence            689999999999999999999999999999 65   555   56788999999999 88999974

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>PTZ00044 ubiquitin; Provisional

Probab=99.22  E-value=2.5e-11  Score=89.11  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|....-.. .   ..++++++||.+||++|+..+|+||++|+|++.   |+.   | +|..+|++|++++|++||++
T Consensus         2 ~i~vk~~~G~~-~---~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~---g~~---L-~d~~~l~~~~i~~~~~i~l~   70 (76)
T PTZ00044          2 QILIKTLTGKK-Q---SFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYS---GKQ---M-SDDLKLSDYKVVPGSTIHMV   70 (76)
T ss_pred             EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC---CEE---c-cCCCcHHHcCCCCCCEEEEE
Confidence            46666533221 3   689999999999999999999999999999975   666   4 58888999999999999997


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      =
T Consensus        71 ~   71 (76)
T PTZ00044         71 L   71 (76)
T ss_pred             E
Confidence            4

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.22  E-value=2.6e-11  Score=89.17  Aligned_cols=67  Identities=22%  Similarity=0.279  Sum_probs=58.2

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|... ..  .   ...++++.||++||++|+..+|+|+++|+|++.   |+.   | .|+.+|++|+++++++||++
T Consensus         2 qi~vk~~-~~--~---~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~---Gk~---L-~D~~tL~~~~i~~~~tl~l~   68 (74)
T cd01793           2 QLFVRAQ-NT--H---TLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA---GVP---L-EDDATLGQCGVEELCTLEVA   68 (74)
T ss_pred             EEEEECC-CE--E---EEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC---CeE---C-CCCCCHHHcCCCCCCEEEEE
Confidence            4677763 22  3   689999999999999999999999999999987   776   4 67799999999999999987

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.21  E-value=1.7e-11  Score=90.77  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      +..+++++||++||++|+..+||||++|+|++.   |+.    .+|+++|++|++++|++|||+=
T Consensus        11 ~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~---G~~----L~d~~tL~~~~i~~g~~l~v~~   68 (76)
T cd01800          11 NFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYE---GIF----IKDSNSLAYYNLANGTIIHLQL   68 (76)
T ss_pred             EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CEE----cCCCCcHHHcCCCCCCEEEEEE
Confidence            788999999999999999999999999999987   654    4677999999999999999974

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>KOG4568|consensus

Probab=99.20  E-value=2.7e-12  Score=128.48  Aligned_cols=77  Identities=39%  Similarity=0.825  Sum_probs=71.4

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPV  238 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~  238 (248)
                      ...+.+|+|+.+.++  ..|++||.|.+.|++|-|+|||||+|.|+|||++.|++||.|+|.||.|.+..++.-+.++.
T Consensus       152 ~~~l~v~dr~l~~gq--~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~~~k~ky~~f~~v~kv~~~~~~~  228 (664)
T KOG4568|consen  152 MLGLRVGDRVLVGGQ--KSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYFQCKPKYGKFAPVQKVFKIEVTI  228 (664)
T ss_pred             ccccccccceeecCc--ccchhhhhccccccCCcccchhcccccccccccccccccccCcchhcchhHHHHHhhccccc
Confidence            557899999999874  89999999999999999999999999999999999999999999999999999998776654

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.17  E-value=7.4e-11  Score=86.67  Aligned_cols=69  Identities=10%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|....... .   ..+++++.||++||++|+..+|+|+++|+|++.   |+.   | +|+.+|++|++++|++||++
T Consensus         2 ~i~vk~~~G~~-~---~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~---G~~---L-~d~~~L~~~~i~~~~~l~l~   70 (74)
T cd01807           2 FLTVKLLQGRE-C---SLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFK---GKA---L-ADDKRLSDYSIGPNAKLNLV   70 (74)
T ss_pred             EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCCHHHeEEEEC---CEE---C-CCCCCHHHCCCCCCCEEEEE
Confidence            46666543331 3   688999999999999999999999999999987   776   4 57799999999999999987

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.16  E-value=6.3e-11  Score=89.13  Aligned_cols=72  Identities=21%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC--CCCCCeEEEEEeCCCceeeccCCCCcccCCCC--CCCCc
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG--QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYP--VENEM   92 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG--ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~--i~dG~   92 (248)
                      |+|.|.++....  -+|+..+++++||++||+||+...+  .||++|||+|.   |+.   | .|+.+|++|.  +.+|.
T Consensus         2 i~l~IK~~~~~~--~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~---GKi---L-kD~~tL~~~~~~~~~~~   72 (79)
T cd01790           2 VTLLIKSPNQKY--EDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYS---GKL---L-PDHLKLRDVLRKQDEYH   72 (79)
T ss_pred             eEEEEECCCCCe--EEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEc---Cee---c-cchhhHHHHhhcccCCc
Confidence            689999876653  2357788999999999999999885  45799999998   887   4 6889999996  99999


Q ss_pred             EEEEE
Q psy13905         93 TLFVE   97 (248)
Q Consensus        93 ~IhVv   97 (248)
                      +||+|
T Consensus        73 tiHLV   77 (79)
T cd01790          73 MVHLV   77 (79)
T ss_pred             eEEEE
Confidence            99997

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.16  E-value=8.8e-11  Score=86.97  Aligned_cols=73  Identities=12%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      |+|.|......  .   +.+++++.||++||++|+..||+||++|+|.+..-.|+.    ..|+.+|++|++.+|..|+|
T Consensus         1 ~~i~vk~~g~~--~---~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~----l~D~~~L~~~~i~~g~~i~l   71 (74)
T cd01813           1 VPVIVKWGGQE--Y---SVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKP----AEDDVKISALKLKPNTKIMM   71 (74)
T ss_pred             CEEEEEECCEE--E---EEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCc----CCCCcCHHHcCCCCCCEEEE
Confidence            46777776665  3   789999999999999999999999999999972112654    46789999999999999998


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      +-
T Consensus        72 mG   73 (74)
T cd01813          72 MG   73 (74)
T ss_pred             Ee
Confidence            74

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.15  E-value=1e-10  Score=85.26  Aligned_cols=69  Identities=12%  Similarity=0.233  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      |+|+|.+....  .   +..+++++||++||++|+..+|+|+++|+|.+.   |+.   | .|+.+|.+|++++|++||+
T Consensus         1 ~~i~vk~~~g~--~---~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~---Gk~---L-~d~~tL~~~~i~~~stl~l   68 (71)
T cd01808           1 IKVTVKTPKDK--E---EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFA---GKI---L-KDTDTLTQHNIKDGLTVHL   68 (71)
T ss_pred             CEEEEEcCCCC--E---EEEECCCChHHHHHHHHHHHhCCCHHHEEEEEC---CeE---c-CCCCcHHHcCCCCCCEEEE
Confidence            35777765433  3   689999999999999999999999999999875   776   4 5778999999999999998


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      +
T Consensus        69 ~   69 (71)
T cd01808          69 V   69 (71)
T ss_pred             E
Confidence            7

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01803 Ubiquitin Ubiquitin

Probab=99.14  E-value=1e-10  Score=85.29  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+..... .   ...+++++||++||++|+..+|+||+.|+|++.   |+.   | .|+.+|++|++++|++|||+
T Consensus         2 ~i~v~~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~---g~~---L-~d~~~L~~~~i~~~~~i~l~   70 (76)
T cd01803           2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV   70 (76)
T ss_pred             EEEEEcCCCCE-E---EEEECCcCcHHHHHHHHHHHhCCCHHHeEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            45666543321 3   688999999999999999999999999999974   665   4 67889999999999999997


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        71 ~   71 (76)
T cd01803          71 L   71 (76)
T ss_pred             E
Confidence            4

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.14  E-value=8.6e-11  Score=86.05  Aligned_cols=58  Identities=19%  Similarity=0.174  Sum_probs=52.8

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      ...+++++||++||++|+..+|+|+++|+|++.   |+.   |.++..+|++|++++|+.||+-
T Consensus        13 ~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~---Gk~---L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796          13 SLDVDPDLELENFKALCEAESGIPASQQQLIYN---GRE---LVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             EEEECCcCCHHHHHHHHHHHhCCCHHHeEEEEC---CeE---ccCCcccHHHcCCCCCCEEEEe
Confidence            689999999999999999999999999999986   776   6566689999999999999973

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.11  E-value=1.5e-10  Score=84.88  Aligned_cols=57  Identities=16%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      ...++++.||++||++|+...|+||++|+|+|.   |+.    .+|+.+|++|++.+|++|||+
T Consensus        12 ~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~---G~~----L~D~~~l~~~~i~~~~tv~~~   68 (70)
T cd01794          12 KLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFS---GKL----LTDKTRLQETKIQKDYVVQVI   68 (70)
T ss_pred             EEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC---CeE----CCCCCCHHHcCCCCCCEEEEE
Confidence            688999999999999999999999999999986   776    478899999999999999997

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>KOG3556|consensus

Probab=99.10  E-value=1.3e-10  Score=112.17  Aligned_cols=80  Identities=23%  Similarity=0.499  Sum_probs=71.1

Q ss_pred             CCCccCCEEEEcCC---CCceeEEEEecccCCCCceEEEEEEcCCC-----CCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905        161 KDIEVGKRCKINDS---DVRFGTVMFVGETKFSSGVWVGVKLDEPF-----GKNNGTVKDVKYFECEENYGMFVKPGRLT  232 (248)
Q Consensus       161 ~~~~vG~Rv~v~~~---~~~~G~vryvG~~~~~~g~wvGVelDep~-----GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  232 (248)
                      ..|+||+.|+|...   ....|+|||||..|...|+|+|||+++..     +..||++.|.|||+|-.+...||+..++.
T Consensus       234 ~~L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d~~a~Fv~~~scs  313 (724)
T KOG3556|consen  234 LNLKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFDTNANFVMSGSCS  313 (724)
T ss_pred             ccceecceEEecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeeccccceeeEcCCCC
Confidence            35899999999831   16789999999999999999999999764     78999999999999999999999999999


Q ss_pred             cC-CCCCCC
Q psy13905        233 IG-DFPVLD  240 (248)
Q Consensus       233 ~g-~fp~~d  240 (248)
                      +. .|..++
T Consensus       314 ~d~rfa~l~  322 (724)
T KOG3556|consen  314 VDPRFARLY  322 (724)
T ss_pred             cCcccchhc
Confidence            87 487776

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.09  E-value=1.8e-10  Score=83.65  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=52.8

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      ...++++.||++||++|+..+|+|+.+|+|++.   |+.   | +|+.+|++|++++|++|||+
T Consensus        12 ~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~---G~~---L-~d~~~l~~~~i~~~stl~l~   68 (70)
T cd01798          12 PVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFA---GKE---L-RNTTTIQECDLGQQSILHAV   68 (70)
T ss_pred             EEEECCCChHHHHHHHHHHHHCCCHHHeEEEEC---CeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            688999999999999999999999999999976   776   4 67799999999999999997

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>KOG0241|consensus

Probab=99.09  E-value=4.3e-11  Score=121.61  Aligned_cols=70  Identities=30%  Similarity=0.377  Sum_probs=63.2

Q ss_pred             hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905        158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI  233 (248)
Q Consensus       158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  233 (248)
                      .....+..|.||.+..+  ..++|||+|++.|.+    |||||.|.|||||++.|++||.|.|+||.||+++++..
T Consensus      1626 ~~pew~~~ge~v~~~~h--~t~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyfrc~p~~g~~vr~s~~~~ 1695 (1714)
T KOG0241|consen 1626 ISPEWRGFGERVVTVEH--TTNVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYFRCLPNKGGGVRVSDGLH 1695 (1714)
T ss_pred             cCchhhhcCceeEEeec--ccceeeecchhhccC----cccccCCCCCcCccccceeEEeecCCCCCcccchhhcc
Confidence            44556788999999764  688999999999987    99999999999999999999999999999999999864

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.08  E-value=2.2e-10  Score=82.32  Aligned_cols=59  Identities=20%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             ceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         33 NLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        33 ~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      ++..++++.||.+||++|+..+|+||+.|+|.+.   |+.   | +|+.+|++|++.+|++||++-
T Consensus         8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~---G~~---L-~d~~tL~~~~i~~~~~I~l~~   66 (69)
T PF00240_consen    8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYN---GKE---L-DDDKTLSDYGIKDGSTIHLVI   66 (69)
T ss_dssp             EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEET---TEE---E-STTSBTGGGTTSTTEEEEEEE
T ss_pred             EEEEECCCCCHHHhhhhcccccccccccceeeee---eec---c-cCcCcHHHcCCCCCCEEEEEE
Confidence            3789999999999999999999999999999997   776   4 899999999999999999863

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.08  E-value=2.4e-10  Score=85.41  Aligned_cols=70  Identities=13%  Similarity=0.093  Sum_probs=56.7

Q ss_pred             EEEEEeCCCCcccccceEE-ecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKK-LKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r-~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      .|+|.+.......   ... ++++.||++||++|+..+|+|+++|||++.   |+.   | +|+.+|++|++++|++||+
T Consensus         2 ~I~vk~~~G~~~~---~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~---Gk~---L-~D~~tL~~y~i~~~~~i~l   71 (78)
T cd01797           2 WIQVRTMDGKETR---TVDSLSRLTKVEELREKIQELFNVEPECQRLFYR---GKQ---M-EDGHTLFDYNVGLNDIIQL   71 (78)
T ss_pred             EEEEEcCCCCEEE---EeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeC---CEE---C-CCCCCHHHcCCCCCCEEEE
Confidence            4566654332111   453 678999999999999999999999999986   777   4 7889999999999999998


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      .
T Consensus        72 ~   72 (78)
T cd01797          72 L   72 (78)
T ss_pred             E
Confidence            7

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.06  E-value=3.4e-10  Score=83.21  Aligned_cols=69  Identities=20%  Similarity=0.357  Sum_probs=57.2

Q ss_pred             EEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         19 LYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        19 v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      |+|.+..... .   ...++++.||.+||++|+..+|+|+++|+|++.   |+.   | .|+.+|.+|++++|++||+.-
T Consensus         1 i~vk~~~g~~-~---~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~---G~~---L-~D~~tL~~~~i~~~~tl~l~~   69 (74)
T cd01810           1 ILVRNDKGRS-S---IYEVQLTQTVATLKQQVSQRERVQADQFWLSFE---GRP---M-EDEHPLGEYGLKPGCTVFMNL   69 (74)
T ss_pred             CEEECCCCCE-E---EEEECCcChHHHHHHHHHHHhCCCHHHeEEEEC---CEE---C-CCCCCHHHcCCCCCCEEEEEE
Confidence            3555544331 2   688999999999999999999999999999976   776   4 577999999999999999863

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.05  E-value=5.4e-10  Score=83.31  Aligned_cols=71  Identities=13%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      ++|+|.+..... .   +..++++.||++||++|+..+|+|++.|||++.   |+.   |. |+ +|++||+.+|++|||
T Consensus         2 m~I~Vk~~~G~~-~---~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~---Gk~---L~-d~-~L~~~gi~~~~~i~l   69 (78)
T cd01804           2 MNLNIHSTTGTR-F---DLSVPPDETVEGLKKRISQRLKVPKERLALLHR---ETR---LS-SG-KLQDLGLGDGSKLTL   69 (78)
T ss_pred             eEEEEEECCCCE-E---EEEECCcCHHHHHHHHHHHHhCCChHHEEEEEC---CcC---CC-CC-cHHHcCCCCCCEEEE
Confidence            367777654331 3   789999999999999999999999999999977   665   44 45 899999999999999


Q ss_pred             EeC
Q psy13905         97 EGN   99 (248)
Q Consensus        97 vD~   99 (248)
                      +-+
T Consensus        70 ~~~   72 (78)
T cd01804          70 VPT   72 (78)
T ss_pred             Eee
Confidence            853

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.03  E-value=7.6e-10  Score=87.05  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=60.6

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      ...|+|....... .   ..+++++.||++||+||+...|+|++.|+|++.   |+.   | .|+.+|++|++++|++||
T Consensus        27 ~M~I~Vk~l~G~~-~---~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dy~I~~~stL~   95 (103)
T cd01802          27 TMELFIETLTGTC-F---ELRVSPFETVISVKAKIQRLEGIPVAQQHLIWN---NME---L-EDEYCLNDYNISEGCTLK   95 (103)
T ss_pred             CEEEEEEcCCCCE-E---EEEeCCCCcHHHHHHHHHHHhCCChHHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEE
Confidence            3567777644331 3   689999999999999999999999999999976   776   4 677999999999999999


Q ss_pred             EEe
Q psy13905         96 VEG   98 (248)
Q Consensus        96 VvD   98 (248)
                      ++-
T Consensus        96 l~~   98 (103)
T cd01802          96 LVL   98 (103)
T ss_pred             EEE
Confidence            973

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.00  E-value=8.2e-10  Score=82.49  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      ++|+|.+..... .   ...++++.||.+||++|+..+|+|++.|||.+.. .|+.   | .|+.+|++|++.+|++|||
T Consensus         3 ~~i~Vk~~~G~~-~---~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~-~G~~---L-~D~~tL~~~gi~~gs~l~l   73 (80)
T cd01792           3 WDLKVKMLGGNE-F---LVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD-SREV---L-QDGVPLVSQGLGPGSTVLL   73 (80)
T ss_pred             eEEEEEeCCCCE-E---EEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc-CCCC---C-CCCCCHHHcCCCCCCEEEE
Confidence            578888643331 3   6789999999999999999999999999995321 3665   4 5778999999999999998


Q ss_pred             EeC
Q psy13905         97 EGN   99 (248)
Q Consensus        97 vD~   99 (248)
                      +-.
T Consensus        74 ~~~   76 (80)
T cd01792          74 VVQ   76 (80)
T ss_pred             EEE
Confidence            754

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.00  E-value=1.2e-09  Score=80.27  Aligned_cols=70  Identities=17%  Similarity=0.246  Sum_probs=58.3

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCC--CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQ--MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGi--pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .|+|.+..... .   ...++++.||.+||++|+..+|+  ||+.|+|++.   |+.   | +|+.+|++|++++|++|+
T Consensus         2 ~i~vk~~~g~~-~---~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~---G~~---L-~d~~~L~~~~i~~~~~i~   70 (77)
T cd01805           2 KITFKTLKQQT-F---PIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYS---GKI---L-KDDTTLEEYKIDEKDFVV   70 (77)
T ss_pred             EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEEC---CEE---c-cCCCCHHHcCCCCCCEEE
Confidence            46677543331 3   68899999999999999999999  9999999986   776   4 577899999999999999


Q ss_pred             EEe
Q psy13905         96 VEG   98 (248)
Q Consensus        96 VvD   98 (248)
                      |.-
T Consensus        71 ~~~   73 (77)
T cd01805          71 VMV   73 (77)
T ss_pred             EEE
Confidence            864

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=98.92  E-value=1.2e-09  Score=81.33  Aligned_cols=53  Identities=13%  Similarity=0.105  Sum_probs=47.1

Q ss_pred             CCCCHHHHHHHHHHHH--CCC-CCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         39 LNNTIGELKQKLELLT--GQM-SSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        39 ~~~TI~eLK~KLe~~t--Gip-p~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      -+.||.+||+||+..+  |++ |++|||++.   |+.   | +|+++|++|+|++|++||++.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~---GKi---L-~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHC---GRK---L-KDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeC---CcC---C-CCCCcHHHcCCCCCCEEEEEe
Confidence            4799999999999996  575 999999988   776   4 688999999999999999984

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>KOG0005|consensus

Probab=98.87  E-value=9.7e-10  Score=78.15  Aligned_cols=57  Identities=9%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      ++.++|..+|..+|++++...||||.+|||+|.   |+.    .+|+.+-.+|++..|+.||++
T Consensus        14 eidIep~DkverIKErvEEkeGIPp~qqrli~~---gkq----m~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen   14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYA---GKQ----MNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             EEeeCcchHHHHHHHHhhhhcCCCchhhhhhhc---ccc----ccccccHHHhhhccceeEeeC
Confidence            899999999999999999999999999999998   877    478999999999999999975

>smart00213 UBQ Ubiquitin homologues

Probab=98.87  E-value=4.4e-09  Score=73.51  Aligned_cols=63  Identities=22%  Similarity=0.331  Sum_probs=53.1

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      .|+|......  .   +.+++++.||++||++|+..+|+|++.|+|.+.   |+.   | .|+.+|++|++.+|+
T Consensus         2 ~i~vk~~~~~--~---~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~---g~~---L-~d~~tL~~~~i~~~~   64 (64)
T smart00213        2 ELTVKTLDGT--I---TLEVKPSDTVSELKEKIAELTGIPVEQQRLIYK---GKV---L-EDDRTLADYNIQDGS   64 (64)
T ss_pred             EEEEEECCce--E---EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CEE---C-CCCCCHHHcCCcCCC
Confidence            5777765522  4   799999999999999999999999999999986   655   4 467999999999884

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.86  E-value=5.1e-09  Score=81.71  Aligned_cols=61  Identities=21%  Similarity=0.244  Sum_probs=55.3

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNY  100 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~~  100 (248)
                      ...++++.||++||.+|.+++|+||.+|+|++.   |+.   |.||+++|++||+.+|++|++.-.+
T Consensus        18 ~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~d---G~~---L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          18 ALLVSANQTLKELKIQIMHAFSVAPFDQNLSID---GKI---LSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             eEEeCccccHHHHHHHHHHHhcCCcccceeeec---Cce---eccCCccHHhcCCCCCCEEEEEecC
Confidence            356899999999999999999999999999987   763   7899999999999999999988644

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.83  E-value=8.3e-09  Score=73.02  Aligned_cols=58  Identities=19%  Similarity=0.265  Sum_probs=52.3

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      .++++++.||++||++|+..+|+|++.|+|.+.   |+.   | +|+.+|++|++.+|+.|+|.+
T Consensus        11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~---g~~---l-~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769          11 ELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYA---GKI---L-KDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CcC---C-CCcCCHHHCCCCCCCEEEEEE
Confidence            688999999999999999999999999999765   554   4 678899999999999999986

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=98.70  E-value=7.7e-08  Score=73.09  Aligned_cols=75  Identities=9%  Similarity=0.092  Sum_probs=64.1

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      +....|.|.|.+..... .   ..++.++.|+..||++++...|+|+++|+|+|.   |+.   | .++.|+.+|++++|
T Consensus         7 ~~~~~i~I~v~~~~g~~-~---~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~---G~~---L-~~~~T~~~l~m~d~   75 (87)
T cd01763           7 EISEHINLKVKGQDGNE-V---FFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD---GQR---I-RDNQTPDDLGMEDG   75 (87)
T ss_pred             CCCCeEEEEEECCCCCE-E---EEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC---CeE---C-CCCCCHHHcCCCCC
Confidence            34557889998764332 3   689999999999999999999999999999996   776   3 57889999999999


Q ss_pred             cEEEEE
Q psy13905         92 MTLFVE   97 (248)
Q Consensus        92 ~~IhVv   97 (248)
                      .+|||+
T Consensus        76 d~I~v~   81 (87)
T cd01763          76 DEIEVM   81 (87)
T ss_pred             CEEEEE
Confidence            999997

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>KOG0010|consensus

Probab=98.60  E-value=6.5e-08  Score=93.41  Aligned_cols=74  Identities=15%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +.|+|.|++....  .   +..++...||.+||++|...+++++++++|+|.   |++   | .|+.+|..|||+||.+|
T Consensus        14 ~~irV~Vkt~~dk--~---~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfa---GrI---L-KD~dTL~~~gI~Dg~Tv   81 (493)
T KOG0010|consen   14 SLIRVTVKTPKDK--Y---EVNVASDSSVLQLKELIAQRFGAPPDQLVLIYA---GRI---L-KDDDTLKQYGIQDGHTV   81 (493)
T ss_pred             ceeEEEEecCCcc--e---eEecccchHHHHHHHHHHHhcCCChhHeeeeec---Ccc---c-cChhhHHHcCCCCCcEE
Confidence            5689999987765  4   799999999999999999999999999999998   887   4 59999999999999999


Q ss_pred             EEEeCC
Q psy13905         95 FVEGNY  100 (248)
Q Consensus        95 hVvD~~  100 (248)
                      |+|...
T Consensus        82 HLVik~   87 (493)
T KOG0010|consen   82 HLVIKS   87 (493)
T ss_pred             EEEecc
Confidence            999654

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=98.53  E-value=1.3e-07  Score=75.49  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=57.9

Q ss_pred             eEEEEEEe-CCCCcccccceEEecCCCCHHHHHHHHH-----HHHCCC--CCCeEEEEEeCCCceeeccCCCCcccCCCC
Q psy13905         16 TVELYITN-SKDKHESCLNLKKLKLNNTIGELKQKLE-----LLTGQM--SSNMTISLYNRNHDLVSHLSDNSMLLGQYP   87 (248)
Q Consensus        16 ~V~v~ItS-~~~s~~s~~~E~r~~~~~TI~eLK~KLe-----~~tGip--p~~mrL~l~~~~g~~i~~L~~d~~~L~~y~   87 (248)
                      .|.|.+.- ..+.. .   =.+|+++.||++||+||+     ..+|+|  +++|+|++.   |+.    +.|+++|++|+
T Consensus         4 ~~e~kfrl~dg~di-g---p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIys---GKi----LeD~~TL~d~~   72 (113)
T cd01814           4 QIEIKFRLYDGSDI-G---PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISA---GKI----LENSKTVGECR   72 (113)
T ss_pred             cEEEEEEccCCCcc-C---ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeC---Cee----cCCCCcHHHhC
Confidence            45666663 33332 4   488999999999999999     666777  999999998   887    47889999999


Q ss_pred             ------CCCCcEEEEEe
Q psy13905         88 ------VENEMTLFVEG   98 (248)
Q Consensus        88 ------i~dG~~IhVvD   98 (248)
                            +....++||+=
T Consensus        73 ~p~g~~~~~~~TmHvvl   89 (113)
T cd01814          73 SPVGDIAGGVITMHVVV   89 (113)
T ss_pred             CcccccCCCceEEEEEe
Confidence                  77778999984

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=98.42  E-value=4.4e-07  Score=86.24  Aligned_cols=71  Identities=15%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC---CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG---QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG---ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +|+|++-...  .  +++.++++.||.+||+||+..+|   +|++.|||+|.   |+.   | .|+.+|.+|+|++|..|
T Consensus         2 kItVKtl~g~--~--~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~---Gki---L-~Dd~tL~dy~I~e~~~I   70 (378)
T TIGR00601         2 TLTFKTLQQQ--K--FKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYS---GKI---L-SDDKTVREYKIKEKDFV   70 (378)
T ss_pred             EEEEEeCCCC--E--EEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEEC---CEE---C-CCCCcHHHcCCCCCCEE
Confidence            5777764333  1  37899999999999999999999   99999999987   876   4 67789999999999988


Q ss_pred             EEEeC
Q psy13905         95 FVEGN   99 (248)
Q Consensus        95 hVvD~   99 (248)
                      +|.-.
T Consensus        71 vvmv~   75 (378)
T TIGR00601        71 VVMVS   75 (378)
T ss_pred             EEEec
Confidence            87643

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0004|consensus

Probab=98.32  E-value=4e-07  Score=76.16  Aligned_cols=59  Identities=20%  Similarity=0.278  Sum_probs=53.6

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN   99 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~   99 (248)
                      .+...++.||..+|.||+..+||||++|||++.   |+.   | .|.++|++|+|+.-++||++=.
T Consensus        14 ~~eve~~~ti~~~Kakiq~~egIp~dqqrlifa---g~q---L-edgrtlSDY~Iqkestl~l~l~   72 (156)
T KOG0004|consen   14 TLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLVLR   72 (156)
T ss_pred             eeeecccccHHHHHHhhhcccCCCchhhhhhhh---hcc---c-ccCCccccccccccceEEEEEE
Confidence            578889999999999999999999999999998   776   4 5679999999999999999853

>PLN02560 enoyl-CoA reductase

Probab=98.31  E-value=2.2e-06  Score=79.56  Aligned_cols=67  Identities=15%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCC-CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQ-MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGNY  100 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGi-pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~~  100 (248)
                      +.+++++.||++||++|+...|+ +++.|||.+.+.+|+......+|+++|.+||+++|++|+|-|.-
T Consensus        17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kDLG   84 (308)
T PLN02560         17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKDLG   84 (308)
T ss_pred             eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEeCC
Confidence            57899999999999999999997 89999999975445421112357789999999999999999975

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.27  E-value=1.9e-06  Score=62.43  Aligned_cols=70  Identities=19%  Similarity=0.152  Sum_probs=59.2

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      |+|.|.+.... ..   ..++.++.|++.|.+++....|+|+ +.++|.|.   |+.   | +++.++.+|++++|.+|+
T Consensus         1 I~i~v~~~~~~-~~---~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fd---G~~---L-~~~~T~~~~~ied~d~Id   69 (72)
T PF11976_consen    1 ITIKVRSQDGK-EI---KFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFD---GKR---L-DPNDTPEDLGIEDGDTID   69 (72)
T ss_dssp             EEEEEEETTSE-EE---EEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEET---TEE---E--TTSCHHHHT-STTEEEE
T ss_pred             CEEEEEeCCCC-EE---EEEECCCCcHHHHHHHHHHhhCCCccceEEEEEC---CEE---c-CCCCCHHHCCCCCCCEEE
Confidence            57888876554 24   7899999999999999999999999 99999986   776   4 677899999999999999


Q ss_pred             EE
Q psy13905         96 VE   97 (248)
Q Consensus        96 Vv   97 (248)
                      |+
T Consensus        70 v~   71 (72)
T PF11976_consen   70 VI   71 (72)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0003|consensus

Probab=98.20  E-value=2.4e-07  Score=73.20  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=53.7

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      .....|+.||..||.++....||||++|+|++.   |+.    .+|..+|+.|+++.-++||.+-
T Consensus        14 ~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~---~k~----LED~~Tla~Y~i~~~~Tl~~~~   71 (128)
T KOG0003|consen   14 TLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ----LEDGRTLADYNIQKESTLHLVL   71 (128)
T ss_pred             EEEecccchHHHHHHHhccccCCCHHHHHHHhc---ccc----cccCCcccccCccchhhhhhhH
Confidence            688899999999999999999999999999998   666    4899999999999999999875

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.14  E-value=6.9e-06  Score=60.83  Aligned_cols=57  Identities=21%  Similarity=0.190  Sum_probs=47.9

Q ss_pred             cCCCCHHHHHHHHHHHHCC-CCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905         38 KLNNTIGELKQKLELLTGQ-MSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN   99 (248)
Q Consensus        38 ~~~~TI~eLK~KLe~~tGi-pp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~   99 (248)
                      +++.||.+||..|+...+. +++.|||.+. ..|+.   | .|+.+|.+||+.+|.+|||-|.
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~---L-~d~~tL~~~gv~~g~~lyvKDL   77 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKS---L-KDDDTLVDLGVGAGATLYVRDL   77 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcc---c-CCcccHhhcCCCCCCEEEEeeC
Confidence            7889999999999999875 7999999865 34555   4 4666899999999999999873

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.70  E-value=0.00011  Score=48.20  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=48.9

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      ..+++++.|+.+||.+|...+|++++.|+|.+.   |..    ..+...+..|++.+|.+|++..
T Consensus        11 ~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~---~~~----~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196          11 ELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVN---GKI----LPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             EEEcCCCCcHHHHHHHHHHHHCcChHHeEEEEC---CeE----CCCCCcHHHcCCCCCCEEEEEe
Confidence            677888999999999999999999999999875   443    2445555799999999999975

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.57  E-value=7.8e-05  Score=56.14  Aligned_cols=74  Identities=16%  Similarity=0.203  Sum_probs=41.7

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +-|.|.|..-.  .   ...++++.|+++|++||...+++|+..|.|.........+  ..++.++|+++|++.|+.|.+
T Consensus         5 milRvrS~dG~--~---Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l--~s~~~~tl~~lglkHGdmlyL   77 (80)
T PF11543_consen    5 MILRVRSKDGM--K---RIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEEL--KSSDSKTLSSLGLKHGDMLYL   77 (80)
T ss_dssp             -EEEEE-SSEE--E---EEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCS--SS-TT-CCCCT---TT-EEE-
T ss_pred             EEEEEECCCCC--E---EEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCccc--ccCCcCCHHHcCCCCccEEEE
Confidence            45667775543  2   5678999999999999999999999999886542221121  135789999999999998876


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      .
T Consensus        78 ~   78 (80)
T PF11543_consen   78 K   78 (80)
T ss_dssp             -
T ss_pred             e
Confidence            4

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG0011|consensus

Probab=97.53  E-value=0.00013  Score=67.76  Aligned_cols=68  Identities=19%  Similarity=0.291  Sum_probs=56.1

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC--CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG--QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG--ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      +|+|+.-..+ +   |++++.|+.||.++|.||+...|  .|++.|+|++.   |+.    ..|+.+++.|++.++.-|.
T Consensus         2 ~lt~KtL~q~-~---F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~---Gki----L~D~~tv~Eykv~E~~fiV   70 (340)
T KOG0011|consen    2 KLTVKTLKQQ-T---FTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYS---GKI----LKDETTVGEYKVKEKKFIV   70 (340)
T ss_pred             eeEeeeccCc-e---eEeecCcchhHHHHHHHHHhccCCCCchhhheeeec---cee----ccCCcchhhhccccCceEE
Confidence            4555543333 2   48999999999999999999999  99999999997   876    4899999999999887444


Q ss_pred             E
Q psy13905         96 V   96 (248)
Q Consensus        96 V   96 (248)
                      |
T Consensus        71 v   71 (340)
T KOG0011|consen   71 V   71 (340)
T ss_pred             E
Confidence            3

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.53  E-value=0.00051  Score=51.19  Aligned_cols=63  Identities=11%  Similarity=0.155  Sum_probs=56.6

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN   99 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~   99 (248)
                      .++++|..+|..||+||..--|++- .|||.|..++|+.  .+..+..+|++|||=....|.|.+|
T Consensus        14 ~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~r--qlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811          14 ILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGER--QLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             EEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCccc--ccccccccHhhhcceeccEEEEEec
Confidence            6899999999999999999999987 9999999988875  2457899999999999999998886

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG4248|consensus

Probab=97.44  E-value=0.00017  Score=75.25  Aligned_cols=69  Identities=10%  Similarity=0.126  Sum_probs=59.3

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      +|.|+.-... ..   +..+...+||.+||..+...+.|+.+.|||++.   |+.    ..|++++..|+| ||-+|||+
T Consensus         4 ~v~vktld~r-~~---t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~---grv----l~~~k~vq~~~v-dgk~~hlv   71 (1143)
T KOG4248|consen    4 NVLVKTLDSR-TR---TFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQ---GRV----LQDDKKVQEYNV-DGKVIHLV   71 (1143)
T ss_pred             ceeeeecccc-ee---EEEechHHHHHHHHHHHHHhcccccccceeeec---cee----eccchhhhhccC-CCeEEEee
Confidence            4556553332 24   788999999999999999999999999999998   887    479999999999 99999999


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      |
T Consensus        72 e   72 (1143)
T KOG4248|consen   72 E   72 (1143)
T ss_pred             c
Confidence            8

>KOG0001|consensus

Probab=97.38  E-value=0.00084  Score=46.53  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=50.3

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      .....+..+|..+|.||+...|+|+..|+|.+.   ++.   | .|+.+|.+|+|..+.++|+..
T Consensus        13 ~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~---~~~---l-~d~~~l~~~~i~~~~~~~l~~   70 (75)
T KOG0001|consen   13 TLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFG---GKP---L-EDGRTLADYNIQEGSTLHLVL   70 (75)
T ss_pred             EEEecCCCHHHHHHHHHHhhcCCCCeeEEEEEC---CEE---C-cCCCcHHHhCCCCCCEEEEEE
Confidence            477888999999999999999999999998775   444   3 566999999999999999764

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=97.28  E-value=0.00062  Score=54.59  Aligned_cols=47  Identities=21%  Similarity=0.239  Sum_probs=40.8

Q ss_pred             EEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC
Q psy13905         35 KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV   88 (248)
Q Consensus        35 ~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i   88 (248)
                      ..-.++.||.+||.+|+-++-.||++|||+ .  ++.    +.+|+++|++||+
T Consensus        16 ~dakes~tVlelK~~iegI~k~pp~dQrL~-k--d~q----vLeD~kTL~d~g~   62 (119)
T cd01788          16 TDAKESTTVYELKRIVEGILKRPPEDQRLY-K--DDQ----LLDDGKTLGDCGF   62 (119)
T ss_pred             eecCCcccHHHHHHHHHHHhcCChhHheee-c--Cce----eecccccHHHcCc
Confidence            455688999999999999999999999999 4  333    3589999999999

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG2982|consensus

Probab=97.20  E-value=0.0005  Score=64.15  Aligned_cols=63  Identities=17%  Similarity=0.228  Sum_probs=56.8

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce--eeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL--VSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~--i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      ++-+...-||.+++.+|.+.+|+-+..|||.|-+.+|+.  ...+ +.+++|.+|+|++|..+.|.
T Consensus       351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~-~~N~~L~~fkIedGDs~lvq  415 (418)
T KOG2982|consen  351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSS-DYNMPLHYFKIEDGDSFLVQ  415 (418)
T ss_pred             ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCcccc-CCCCcceEEeccCCCEeeee
Confidence            688999999999999999999999999999999999986  4444 67899999999999988775

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=97.13  E-value=0.001  Score=53.18  Aligned_cols=58  Identities=10%  Similarity=0.168  Sum_probs=44.2

Q ss_pred             eEEecCCCCHHHHHHHHHHH-------HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc------EEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELL-------TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM------TLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~-------tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~------~IhVvD   98 (248)
                      +.+|++++||.+||++|...       .-..++++||++.   |++   | +|+.+|+++.+.-|.      ++||+=
T Consensus        17 ~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~---Gri---L-~d~~tL~~~~~~~~~~~~~~~vmHlvv   87 (111)
T PF13881_consen   17 PFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYA---GRI---L-EDNKTLSDCRLPSGETPGGPTVMHLVV   87 (111)
T ss_dssp             EEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEET---TEE---E--SSSBTGGGT--TTSETT--EEEEEEE
T ss_pred             ccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeC---Cee---c-CCcCcHHHhCCCCCCCCCCCEEEEEEe
Confidence            78999999999999999843       3456788999987   886   4 699999999877654      788885

>KOG1872|consensus

Probab=96.68  E-value=0.0075  Score=58.62  Aligned_cols=73  Identities=19%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      ..|.|.....-+ .   -..++.+.|..-||++|+..||++|+.|++.++   |..    ..|+-.++..+|++|++||+
T Consensus         4 ~~v~VKW~gk~y-~---v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vK---Gg~----a~dd~~~~al~iKpn~~lmM   72 (473)
T KOG1872|consen    4 DTVIVKWGGKKY-P---VETLSTDETPSVLKAQLFALTGVPPERQKVMVK---GGL----AKDDVDWGALQIKPNETLMM   72 (473)
T ss_pred             ceEeeeecCccc-c---ceeccCCCchHHHHHHHHHhcCCCccceeEEEe---ccc----ccccccccccccCCCCEEEe
Confidence            456777666553 2   345899999999999999999999999999988   655    35555789999999999999


Q ss_pred             EeCC
Q psy13905         97 EGNY  100 (248)
Q Consensus        97 vD~~  100 (248)
                      .-+.
T Consensus        73 mGt~   76 (473)
T KOG1872|consen   73 MGTA   76 (473)
T ss_pred             eccc
Confidence            9765

>KOG4495|consensus

Probab=96.48  E-value=0.004  Score=48.60  Aligned_cols=57  Identities=23%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             EEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCC-------CCCCcEEEE
Q psy13905         35 KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYP-------VENEMTLFV   96 (248)
Q Consensus        35 ~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~-------i~dG~~IhV   96 (248)
                      ..-.++-||-+||.||+-++--|++.|||+.-+.+     .|.+|.++|++.|       ++.-.++-+
T Consensus        16 ~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~e-----qlL~D~ktL~d~gfts~~ak~q~pA~vgL   79 (110)
T KOG4495|consen   16 TDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTE-----QLLDDGKTLGDCGFTSQTAKPQAPATVGL   79 (110)
T ss_pred             eecCccccHHHHHHHHHHHHhCCCcchheeecCHH-----HHhhccchhhhccccccccccCCCceeee
Confidence            44567899999999999999999999999987443     2568999999994       444455555

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=95.68  E-value=0.013  Score=43.37  Aligned_cols=72  Identities=15%  Similarity=0.091  Sum_probs=47.1

Q ss_pred             eEEEEEEeCC-CCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCe----EEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         16 TVELYITNSK-DKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNM----TISLYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        16 ~V~v~ItS~~-~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~m----rL~l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      .++|.|.... .+  .   ...+|.+.||.+|..-|-...+.+....    ...+....|..    .+++.+|.++++.|
T Consensus         2 ~~rVtv~~~~~~~--~---Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~----L~~~~tL~~~gV~d   72 (79)
T PF08817_consen    2 LCRVTVDAGNGRQ--V---DLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRP----LDPDQTLADAGVRD   72 (79)
T ss_dssp             EEEEEEE-TT--E--E---EEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEE----EETTSBCGGGT--T
T ss_pred             EEEEEEEcCCCcE--E---EEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcc----cCCcCcHhHcCCCC
Confidence            4677777654 43  4   8999999999999999999988754432    24554344544    37899999999999


Q ss_pred             CcEEEE
Q psy13905         91 EMTLFV   96 (248)
Q Consensus        91 G~~IhV   96 (248)
                      |..+++
T Consensus        73 Gd~L~L   78 (79)
T PF08817_consen   73 GDVLVL   78 (79)
T ss_dssp             T-EEEE
T ss_pred             CCEEEe
Confidence            999886

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=95.49  E-value=0.093  Score=40.37  Aligned_cols=63  Identities=11%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      .+.|+...||+.+...+...+.| +...||.-+...+.. ..|.+...+|.+-++.+|..|.+.-
T Consensus        17 t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~-e~L~~~~~Tv~da~L~~gQ~vliE~   79 (88)
T PF14836_consen   17 TKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY-ELLNNPEITVEDAGLYDGQVVLIEE   79 (88)
T ss_dssp             EEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE-EEE--TTSBTTTTT--TTEEEEEEE
T ss_pred             HhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch-hhhCCCCccHHHccCcCCCEEEEEe
Confidence            58999999999999999999999 778999998765554 6677888999999999999887764

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=95.19  E-value=0.049  Score=41.18  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=40.4

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCc
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD   71 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~   71 (248)
                      +|+|+.+.  +   .   -+|++++++..+|.+||....++|++.++|+|++.+..
T Consensus         4 vvKV~f~~--t---I---aIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~   51 (80)
T cd06406           4 VVKVHFKY--T---V---AIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASG   51 (80)
T ss_pred             EEEEEEEE--E---E---EEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCC
Confidence            46666664  2   3   69999999999999999999999999999999976543

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PRK10708 hypothetical protein; Provisional

Probab=95.14  E-value=0.1  Score=36.89  Aligned_cols=57  Identities=30%  Similarity=0.541  Sum_probs=45.3

Q ss_pred             CccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcC-CCCCCceeEcCeEee-ecCCCceeeEcCC
Q psy13905        163 IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDE-PFGKNNGTVKDVKYF-ECEENYGMFVKPG  229 (248)
Q Consensus       163 ~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDe-p~GkndGs~~G~rYF-~c~~~~G~Fv~~~  229 (248)
                      ++|.|||.|.  +.+.|.|+|.-+  =+|..|++.=|.|++ |        .|+.|| +....-|+||.|.
T Consensus         1 MkvnD~VtVKTDG~~rR~G~iLav--E~F~EG~MyLvaL~dYP--------~GiWFFNE~~~~~G~FVep~   61 (62)
T PRK10708          1 MKVNDRVTVKTDGGPRRPGVVLAV--EEFSEGTMYLVSLEDYP--------LGIWFFNEAGHQDGIFVEKA   61 (62)
T ss_pred             CccccEEEEecCCCccccceEEEE--eeccCcEEEEEEcCcCC--------CceEEEeccCCCCceEeccc
Confidence            3689999997  556788999988  457889999999986 4        367788 4567889999874

>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose []

Probab=95.09  E-value=0.097  Score=37.04  Aligned_cols=57  Identities=28%  Similarity=0.539  Sum_probs=45.3

Q ss_pred             CccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcC-CCCCCceeEcCeEee-ecCCCceeeEcCC
Q psy13905        163 IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDE-PFGKNNGTVKDVKYF-ECEENYGMFVKPG  229 (248)
Q Consensus       163 ~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDe-p~GkndGs~~G~rYF-~c~~~~G~Fv~~~  229 (248)
                      ++|.|||.|.  +.+.|.|+|.-+  =+|..|++.=|.|++ |        .|+.|| +....-|+||.|.
T Consensus         1 MkvnD~VtVKTDG~~rR~G~ilav--E~F~EG~MYLvaL~dYP--------~GiWFFNE~~~~dG~FVep~   61 (62)
T PF10781_consen    1 MKVNDRVTVKTDGGPRREGVILAV--EPFNEGTMYLVALEDYP--------AGIWFFNEKDSPDGTFVEPR   61 (62)
T ss_pred             CccccEEEEecCCcccccceEEEE--eeccCcEEEEEEcCcCC--------cceEEEecCCCCCcEEeeec
Confidence            3689999997  456788999988  456889999999986 4        367788 4568889999875

>PTZ00243 ABC transporter; Provisional

Probab=94.79  E-value=0.044  Score=60.89  Aligned_cols=63  Identities=19%  Similarity=0.144  Sum_probs=50.2

Q ss_pred             hhhhcCCCccCCEEEEcCCCCceeEEEEecccCC--CCceEEEEEEcCCC--------------CCCceeEcCeEeeec
Q psy13905        156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKF--SSGVWVGVKLDEPF--------------GKNNGTVKDVKYFEC  218 (248)
Q Consensus       156 ~~~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~--~~g~wvGVelDep~--------------GkndGs~~G~rYF~c  218 (248)
                      ....+=+-.||.||-+...+.-+|++||||.+..  .|+.++||||.-|-              +-|+|.+.|.+.|.-
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (1560)
T PTZ00243        118 YERNAWNCMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTP  196 (1560)
T ss_pred             HhhcccccccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCc
Confidence            3344556789999999855578999999999965  57899999999651              248999999999964

>smart00666 PB1 PB1 domain

Probab=94.57  E-value=0.13  Score=37.67  Aligned_cols=41  Identities=20%  Similarity=0.254  Sum_probs=36.8

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS   74 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~   74 (248)
                      ..++++++|..+|+.+|...++.+....+|.|.+.+|..+.
T Consensus        14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~   54 (81)
T smart00666       14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVS   54 (81)
T ss_pred             EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEE
Confidence            46788999999999999999999999999999998888743

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=94.44  E-value=0.6  Score=34.27  Aligned_cols=77  Identities=16%  Similarity=0.121  Sum_probs=58.2

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCC-eEEEEEeCCCceeeccCCC-CcccCCCCCCC
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSN-MTISLYNRNHDLVSHLSDN-SMLLGQYPVEN   90 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~-mrL~l~~~~g~~i~~L~~d-~~~L~~y~i~d   90 (248)
                      ..+.++|.|..+.-+. .   .++|.++.||.+|.+-|......+... -+|.-.-+ .+.   +..+ +.+|.+.++.+
T Consensus         3 ~~~~~~I~vRlpdG~~-l---~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~P-r~~---l~~~~~~tl~e~~l~p   74 (82)
T PF00789_consen    3 ESDVVRIQVRLPDGSR-L---QRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFP-RRE---LTDEDSKTLEEAGLLP   74 (82)
T ss_dssp             TSSEEEEEEEETTSTE-E---EEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSS-TEE---CCSTTTSBTCCCTTSS
T ss_pred             CCCEEEEEEECCCCCE-E---EEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCC-CcC---CCccccccHHHhcCCC
Confidence            4567889999765442 4   899999999999999999998888865 56643222 222   2233 59999999999


Q ss_pred             CcEEEEE
Q psy13905         91 EMTLFVE   97 (248)
Q Consensus        91 G~~IhVv   97 (248)
                      +..|+|.
T Consensus        75 ~~~l~v~   81 (82)
T PF00789_consen   75 SATLIVE   81 (82)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEEE
Confidence            9999985

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>KOG3493|consensus

Probab=93.62  E-value=0.022  Score=41.47  Aligned_cols=56  Identities=21%  Similarity=0.366  Sum_probs=45.7

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      ..+-.++.||+++|.-|...||+.|+...|.=      . ..+-.|.-+|++|-+++|+.+.+
T Consensus        15 RvKCn~dDtiGD~KKliaaQtGT~~~kivl~k------~-~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen   15 RVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKK------W-YTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             EEEeCCcccccCHHHHHHHhhCCChhHhHHHh------h-hhhhhcccceeeEEeccCccEEE
Confidence            35567899999999999999999999887662      2 22457899999999999997654

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=93.43  E-value=0.37  Score=36.38  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=41.7

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCcee
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLV   73 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i   73 (248)
                      +|.++.+..-  .   ..++++++++.+|+++|..+.++.. +...|.|.|.+|..+
T Consensus         2 ~vK~~~~~d~--~---r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v   53 (82)
T cd06407           2 RVKATYGEEK--I---RFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWV   53 (82)
T ss_pred             EEEEEeCCeE--E---EEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeE
Confidence            4555554443  3   5789999999999999999999987 789999999888873

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=93.00  E-value=0.34  Score=35.47  Aligned_cols=77  Identities=18%  Similarity=0.330  Sum_probs=52.0

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCC---cccCCCCC--CCC
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNS---MLLGQYPV--ENE   91 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~---~~L~~y~i--~dG   91 (248)
                      |.|.++.....+.    ...++.+.|..+|+.+|...+|.++...+|.|.+.+|..+. +..|.   ..+..+.-  ..-
T Consensus         2 ~~vK~~~~~~~~~----~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~-i~sd~Dl~~a~~~~~~~~~~~   76 (84)
T PF00564_consen    2 VRVKVRYGGDIRR----IISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVT-ISSDEDLQEAIEQAKESGSKT   76 (84)
T ss_dssp             EEEEEEETTEEEE----EEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEE-ESSHHHHHHHHHHHHHCTTSC
T ss_pred             EEEEEEECCeeEE----EEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEE-eCCHHHHHHHHHHHHhcCCCc
Confidence            4556665443311    25688899999999999999999999999999999998744 33332   12222211  124


Q ss_pred             cEEEEEe
Q psy13905         92 MTLFVEG   98 (248)
Q Consensus        92 ~~IhVvD   98 (248)
                      .+|||.+
T Consensus        77 lrl~v~~   83 (84)
T PF00564_consen   77 LRLFVQD   83 (84)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5888876

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=92.09  E-value=0.69  Score=33.53  Aligned_cols=41  Identities=15%  Similarity=0.169  Sum_probs=35.7

Q ss_pred             eEEec-CCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905         34 LKKLK-LNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS   74 (248)
Q Consensus        34 E~r~~-~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~   74 (248)
                      ..+++ .+.|..+|+++|...++.+...-+|.+.+.+|..+.
T Consensus        13 ~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~   54 (81)
T cd05992          13 RFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVT   54 (81)
T ss_pred             EEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEE
Confidence            56777 899999999999999999987889999998887643

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=91.19  E-value=1.4  Score=37.55  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=48.5

Q ss_pred             EEEEEEeCCC-CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC----
Q psy13905         17 VELYITNSKD-KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE----   91 (248)
Q Consensus        17 V~v~ItS~~~-s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG----   91 (248)
                      |+|+|++-.. .+ ...+...++.+.||.+|+.+|....++++..+ ++|+...+..+.  ..++..+..+...+.    
T Consensus         1 i~Vlvss~~g~~l-p~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~-~~L~~~~n~~l~--~~~~~~~s~l~~~~~~~~~   76 (162)
T PF13019_consen    1 INVLVSSFDGLTL-PPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQ-LYLTTNSNGQLS--PSSDIPLSSLLSSSQDSDF   76 (162)
T ss_pred             CeEEEecCCCCCC-CCeEEeeCCCCCcHHHHHHHHHhhcCCCccce-eEEEEeCCCeeC--CCccccHHhhccCcCCCCc
Confidence            5788886322 11 01136889999999999999999999999887 555543343321  234555555543332    


Q ss_pred             cEEEEE
Q psy13905         92 MTLFVE   97 (248)
Q Consensus        92 ~~IhVv   97 (248)
                      .+|+|.
T Consensus        77 ~~l~l~   82 (162)
T PF13019_consen   77 ITLRLS   82 (162)
T ss_pred             eEEEEE
Confidence            255555

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=90.48  E-value=2  Score=32.50  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeecc----CCCCcccCCCCCCC
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL----SDNSMLLGQYPVEN   90 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L----~~d~~~L~~y~i~d   90 (248)
                      ..++|.|.-+.-++ .   ++||..+.||..|..=++.. |-.|..-+|....+. +.+..+    .+.+.+|.+-|+.+
T Consensus         3 ~~~~I~iRlp~G~R-l---~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPr-r~~~~~~~~~~~~~~TL~eaGL~~   76 (85)
T cd01774           3 DTVKIVFKLPNGTR-V---ERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPR-RVLPCLPSEGDPPPPTLLEAGLSN   76 (85)
T ss_pred             ceEEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCC-ccccccccccCcCCCCHHHcCCCC
Confidence            46788888544332 4   89999999999999999654 556667777665443 233322    24578999999999


Q ss_pred             CcEEEEEeC
Q psy13905         91 EMTLFVEGN   99 (248)
Q Consensus        91 G~~IhVvD~   99 (248)
                      ...|.|.|.
T Consensus        77 s~~L~V~d~   85 (85)
T cd01774          77 SEVLFVQDL   85 (85)
T ss_pred             ccEEEEecC
Confidence            999998873

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=89.19  E-value=1.6  Score=33.66  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCceee
Q psy13905         39 LNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLVS   74 (248)
Q Consensus        39 ~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i~   74 (248)
                      ++++..+|++||...+.+++ ....|.|.|.+|..+.
T Consensus        23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~   59 (91)
T cd06398          23 LDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVT   59 (91)
T ss_pred             CCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEE
Confidence            46999999999999999998 7889999999998744

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=87.96  E-value=1.9  Score=32.98  Aligned_cols=49  Identities=10%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL   72 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~   72 (248)
                      |+|.|+.....  .   -.+++++++..+|.+||..++|+. +..+|.+.|. |..
T Consensus         3 ikVKv~~~~Dv--~---~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE-GD~   51 (86)
T cd06408           3 IRVKVHAQDDT--R---YIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD-GDM   51 (86)
T ss_pred             EEEEEEecCcE--E---EEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC-CCC
Confidence            56666654443  2   489999999999999999999995 6778888877 665

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=87.90  E-value=3.8  Score=30.05  Aligned_cols=75  Identities=12%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCC--CcccCCCCCCCCc
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDN--SMLLGQYPVENEM   92 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d--~~~L~~y~i~dG~   92 (248)
                      +..+|.|.-+.-++ .   +++|+.+.||.+|.+-+....+.....-+|.-..+ .+.   +.++  +.+|.+.++.++.
T Consensus         3 ~~~~I~iRlPdG~r-i---~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~P-rk~---l~~~d~~~tL~e~gL~p~~   74 (80)
T smart00166        3 DQCRLQIRLPDGSR-L---VRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFP-RRT---FTKDDYSKTLLELALLPSS   74 (80)
T ss_pred             CeEEEEEEcCCCCE-E---EEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCC-CcC---CccccccCCHHHCCCCCce
Confidence            46778888554442 4   79999999999999999766666555555443222 122   3332  6899999999988


Q ss_pred             EEEEE
Q psy13905         93 TLFVE   97 (248)
Q Consensus        93 ~IhVv   97 (248)
                      .|.|.
T Consensus        75 ~l~v~   79 (80)
T smart00166       75 TLVLE   79 (80)
T ss_pred             EEEEe
Confidence            88764

Present in FAF1 and Shp1p.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=87.85  E-value=2.6  Score=31.94  Aligned_cols=49  Identities=14%  Similarity=0.181  Sum_probs=39.4

Q ss_pred             EEEEEEeCCCCcccccceEEecC--CCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905         17 VELYITNSKDKHESCLNLKKLKL--NNTIGELKQKLELLTGQMSSNMTISLYNRNHDL   72 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~--~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~   72 (248)
                      |+|.++.....  .   -.+|++  ++|+.+|++.+..+++++  .-.|.+-|.+|..
T Consensus         1 V~vKaty~~d~--~---rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~   51 (81)
T cd06396           1 VNLKVTYNGES--Q---SFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEE   51 (81)
T ss_pred             CEEEEEECCeE--E---EEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCE
Confidence            46677766554  2   467888  889999999999999999  7777788888776

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=86.28  E-value=5.5  Score=29.73  Aligned_cols=78  Identities=12%  Similarity=0.067  Sum_probs=56.9

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +++.++|.|.-+.-++ .   ++||..+.|++.|-.=+... |.++..-+|.-.-+. +.+.. .+.+.+|.+.|+.+..
T Consensus         1 ~~~~~~i~iRlP~G~r-~---~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPR-k~~~~-~d~~~TL~e~gL~p~~   73 (80)
T cd01771           1 GEPISKLRVRTPSGDF-L---ERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPR-RDLTQ-LDPNFTLLELKLYPQE   73 (80)
T ss_pred             CCCeEEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCC-CCCcC-CCCCCcHHHcCCCCCc
Confidence            4678899999655442 4   79999999999999999875 778777776643332 22222 2446799999999998


Q ss_pred             EEEEE
Q psy13905         93 TLFVE   97 (248)
Q Consensus        93 ~IhVv   97 (248)
                      +|.|.
T Consensus        74 ~L~Ve   78 (80)
T cd01771          74 TLILE   78 (80)
T ss_pred             EEEEE
Confidence            88875

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=85.28  E-value=5.9  Score=29.42  Aligned_cols=73  Identities=15%  Similarity=0.173  Sum_probs=50.7

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCC-CCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS-SNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp-~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ++..+|.|.-+.-++ .   .++|+.+.||++|.+=+....+.+. ..-.|....+ .+.   +.+++.+|.+.|+.+.+
T Consensus         2 ~p~t~iqiRlpdG~r-~---~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP-~k~---l~~~~~Tl~eagL~~s~   73 (79)
T cd01770           2 EPTTSIQIRLADGKR-L---VQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFP-VKE---LSDESLTLKEANLLNAV   73 (79)
T ss_pred             CCeeEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCC-Ccc---cCCCCCcHHHCCCcCcE
Confidence            467789999655443 4   7999999999999999998775432 2334433222 232   45668999999999765


Q ss_pred             EE
Q psy13905         93 TL   94 (248)
Q Consensus        93 ~I   94 (248)
                      .+
T Consensus        74 v~   75 (79)
T cd01770          74 IV   75 (79)
T ss_pred             EE
Confidence            44

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=85.02  E-value=3.2  Score=31.46  Aligned_cols=40  Identities=18%  Similarity=0.135  Sum_probs=34.5

Q ss_pred             EEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceee
Q psy13905         35 KKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS   74 (248)
Q Consensus        35 ~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~   74 (248)
                      ..|+...|+..|++||+..+.+|+..--|.|.|.+|..|.
T Consensus        14 f~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~IT   53 (82)
T cd06397          14 IVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEIT   53 (82)
T ss_pred             EecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEE
Confidence            4467789999999999999999998899999888877643

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=84.86  E-value=7.8  Score=29.32  Aligned_cols=81  Identities=19%  Similarity=0.219  Sum_probs=60.7

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      |+++.-+|.|.-+.-++ .   +++|..+.|+..|-.=+.. -|.++..-+|.=..+. +.+... +-+.+|.+.|+.+.
T Consensus         1 ~~~~~t~i~vRlP~G~r-~---~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPR-r~~~~~-d~~~TL~e~GL~P~   73 (82)
T cd01773           1 DNGPKARLMLRYPDGKR-E---QIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPR-RKLSHL-DYDITLQEAGLCPQ   73 (82)
T ss_pred             CCCCeeEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCC-cccCCc-ccCCCHHHcCCCCC
Confidence            46777889999654442 4   8999999999999988877 4778888887754443 333332 34589999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      .+|.|.|-
T Consensus        74 ~~LfVq~r   81 (82)
T cd01773          74 ETVFVQER   81 (82)
T ss_pred             cEEEEecC
Confidence            99999874

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=84.09  E-value=3.2  Score=32.30  Aligned_cols=50  Identities=16%  Similarity=0.074  Sum_probs=33.9

Q ss_pred             EEEEEEeCCCCcccccceEEec--CCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905         17 VELYITNSKDKHESCLNLKKLK--LNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL   72 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~--~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~   72 (248)
                      +.|.++++...     ....|+  ...|+.+||..|....+-.++..+|-|-- .|+.
T Consensus         3 l~IRFs~sipD-----l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~-~Gr~   54 (97)
T PF10302_consen    3 LTIRFSDSIPD-----LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIY-AGRL   54 (97)
T ss_pred             EEEEECCCCCC-----ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeee-cCcc
Confidence            45556653333     366776  88999999999999996666665555432 2765

They contain a characteristic GFDRL sequence motif.

>KOG0006|consensus

Probab=83.98  E-value=2.7  Score=39.63  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             ceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         33 NLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        33 ~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      +...++.+..|.+||+-++..+|+||.+.+++|.   |+.   | .++.++....+.--+.+|++
T Consensus        16 l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFa---GKe---L-s~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen   16 LPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFA---GKE---L-SNDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             eeEEEecCCCHHHHHHHHHHhhCCChhheEEEEe---ccc---c-ccCceeecccccccchhhhh
Confidence            3688889999999999999999999999999998   776   3 45555654433333445554

>KOG1639|consensus

Probab=82.71  E-value=2.9  Score=38.20  Aligned_cols=63  Identities=17%  Similarity=0.136  Sum_probs=48.7

Q ss_pred             eEEecCCCCHHHHHHHH-HHHHCCCCCCeEEEEEeC-CCceeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905         34 LKKLKLNNTIGELKQKL-ELLTGQMSSNMTISLYNR-NHDLVSHLSDNSMLLGQYPVENEMTLFVEGNY  100 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KL-e~~tGipp~~mrL~l~~~-~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~~  100 (248)
                      ++..+...||.+|+.++ ..-..+.|..+|+.|+-. .|+.   + -++.+|.+|+..+|.+|.|-|.-
T Consensus        16 ~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkp---l-~~~s~l~e~~~~s~~~i~vKDLG   80 (297)
T KOG1639|consen   16 EKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKP---L-IDNSKLQEYGDGSGATIYVKDLG   80 (297)
T ss_pred             eecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcc---c-cchhHHHHhccCCCCEEEEeccC
Confidence            57788899999999555 555788887888887643 3444   3 35666999999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
1whg_A	113	Solution Structure Of The Cap-Gly Domain In Mouse T		8e-20
1tov_A	98	Structural Genomics Of Caenorhabditis Elegans: Cap-		4e-19
1lpl_A	95	Structural Genomics Of Caenorhabditis Elegans: Cap-		4e-19
4b6m_A	84	Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gl		2e-15
3rdv_A	72	Structure Of The Slain2c-Clipcg1 Complex Length = 7		8e-15
2cp5_A	141	Solution Structure Of The 1st Cap-Gly Domain In Hum		8e-15
2e3i_A	86	Crystal Structure Of The Clip-170 Cap-Gly Domain 1		2e-14
2qk0_A	74	Structural Basis Of Microtubule Plus End Tracking B		3e-14
2cp2_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		3e-14
2cp6_A	172	Solution Structure Of The 2nd Cap-Gly Domain In Hum		6e-14
2cp7_A	84	Solution Structure Of The 1st Cap-Gly Domain In Mou		1e-13
2e4h_A	98	Solution Structure Of Cytoskeletal Protein In Compl		2e-13
2e3h_A	90	Crystal Structure Of The Clip-170 Cap-Gly Domain 2		4e-13
2z0w_A	96	Crystal Structure Of The 2nd Cap-Gly Domain In Huma		4e-13
2coz_A	122	Solution Structure Of The Cap-Gly Domain In Human C		6e-13
2coy_A	112	Solution Structure Of The Cap-Gly Domain In Human D		1e-12
2hkn_A	97	Crystal Structure Of The Cap-Gly Domain Of Human Dy		1e-12
1txq_A	93	Crystal Structure Of The Eb1 C-Terminal Domain Comp		1e-12
2hl3_A	97	Crystal Structure Of The A49m Mutant Cap-Gly Domain		2e-12
3tq7_P	71	Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do		2e-12
1whj_A	102	Solution Structure Of The 1st Cap-Gly Domain In Mou		3e-12
1whk_A	91	Solution Structure Of The 3rd Cap-Gly Domain In Mou		6e-12
2cp3_A	84	Solution Structure Of The 2nd Cap-Gly Domain In Hum		1e-10
2cp0_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		1e-10
2cow_A	100	Solution Structure Of The Cap-Gly Domain In Human K		2e-10
1whh_A	102	Solution Structure Of The 2nd Cap-Gly Domain In Mou		2e-09
1v6e_A	95	Solution Structure Of A N-Terminal Ubiquitin-Like D		2e-04

>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin Specific Chaperone B Length = 113

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
Query: 163 IEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
           I VG RC++   D  +R GTVM+VG T F  G WVGV+ DEP GKN+G+V   +YFEC+ 
Sbjct: 33  ISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQA 92
Query: 221 NYGMFVKPGRLTIGD 235
            YG FVKP  +T+GD
Sbjct: 93  KYGAFVKPSAVTVGD 107

>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 98

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Query: 161 KDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
           K+I VG RC++       R G V +VG TKF  GVWVGVK DEP GKN+G+V  V+YF+C
Sbjct: 13  KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDC 72
Query: 219 EENYGMFVKPGRLTIGDFPVLDPFDELDEI 248
           +  YG FV+P  + +GDFP L     +DEI
Sbjct: 73  DPKYGGFVRPVDVKVGDFPEL----SIDEI 98

>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 95

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 6/90 (6%)
Query: 161 KDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
           K+I VG RC++       R G V +VG TKF  GVWVGVK DEP GKN+G+V  V+YF+C
Sbjct: 10  KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDC 69
Query: 219 EENYGMFVKPGRLTIGDFPVLDPFDELDEI 248
           +  YG FV+P  + +GDFP L     +DEI
Sbjct: 70  DPKYGGFVRPVDVKVGDFPEL----SIDEI 95

>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly Domain Length = 84

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGE-TKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
           ++ I VG RC     D R G+V FVG       G WVGV+ DEP GK +GTVK  + F+C
Sbjct: 3   METIHVGDRCLCRPGD-RLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQC 61
Query: 219 EENYGMFVKPGRLTIGDFP 237
           + NYG F++P ++ +GDFP
Sbjct: 62  QPNYGGFLRPDQVEVGDFP 80

>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex Length = 72

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE  
Sbjct: 2   DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 222 YGMFVKPGRLT 232
            G+F +P +LT
Sbjct: 60  KGIFTRPSKLT 70

>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170RESTIN Length = 141

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           D  VG+R  +N +   F  + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE  
Sbjct: 64  DFRVGERVWVNGNKPGF--IQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 121
Query: 222 YGMFVKPGRLT 232
            G+F +P +LT
Sbjct: 122 KGIFTRPSKLT 132

>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1 Length = 86

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE  
Sbjct: 2   DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59
Query: 222 YGMFVKPGRLT 232
            G+F +P +LT
Sbjct: 60  KGIFTRPSKLT 70

>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 74

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE  
Sbjct: 3   DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 60
Query: 222 YGMFVKPGRLT 232
            G+F +P + T
Sbjct: 61  KGIFTRPSKXT 71

>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 115CYLN2 Length = 95

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
            L D  VG+R  +N   V+ G V ++GET+F+ G W GV LD+P GKN+G V  V+YFEC
Sbjct: 15  FLGDFVVGERVWVNG--VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFEC 72
Query: 219 EENYGMFVKPGRLT 232
               G+F +P +LT
Sbjct: 73  PALQGIFTRPSKLT 86

>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 170RESTIN Length = 172

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
           +++++G R  +  +  + G V F+GET F+ G W GV+LDEP GKN+G V   +YF+C+ 
Sbjct: 37  RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 94
Query: 221 NYGMFVKPGRLTIGDFPVLDP 241
            YG+F    ++T   FP   P
Sbjct: 95  KYGLFAPVHKVTKIGFPSTTP 115

>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse Clip- 170RESTIN Length = 84

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
             VG+R  +N +   F  + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE   
Sbjct: 8   FRVGERVWVNGNKPGF--IQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 65
Query: 223 GMFVKPGRLT 232
           G+F +P +LT
Sbjct: 66  GIFTRPSKLT 75

>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With Tubulin Tail Length = 98

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
           +++++G R  +  +  + G V F+GET F+ G W GV+LDEP GKN+G V   +YF+C+ 
Sbjct: 8   RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 65
Query: 221 NYGMFVKPGRLTIGDFPVLDP 241
            YG+F    ++T   FP   P
Sbjct: 66  KYGLFAPVHKVTKIGFPSTTP 86

>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2 Length = 90

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           ++++G R  +  +  + G V F+GET F+ G W GV+LDEP GKN+G V   +YF+C+  
Sbjct: 1   ELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPK 58
Query: 222 YGMFVKPGRLTIGDFPVLDP 241
           YG+F    ++T   FP   P
Sbjct: 59  YGLFAPVHKVTKIGFPSTTP 78

>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human Restin- Like Protein 2 Reveals A Swapped-Dimer Length = 96

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 177 RFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDF 236
           R GT+ F G T F+ G W G++L++P GKN+G+V  V+YF C   YG+F  P R+     
Sbjct: 23  RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQR--- 79
Query: 237 PVLDPFDELDEI 248
            V D  D L EI
Sbjct: 80  -VTDSLDTLSEI 90

>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Centrosome-Associated Protein Cap350 Length = 122

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
           L D  +G R  I +  V+ G + F GET F+ G W GV+LD+P G NNGT   + YFEC+
Sbjct: 29  LFDFHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK 86
Query: 220 ENYGMFVKPGRLT 232
           E +G+F  P +++
Sbjct: 87  EKHGIFAPPQKIS 99

>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin 1 Length = 112

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
            + + VG R ++     R GTV +VG T F++G WVGV LDE  GKN+GTV+  KYF C+
Sbjct: 31  ARPLRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD 89
Query: 220 ENYGMFVKPGRLTI 233
           E +G+FV+  ++ +
Sbjct: 90  EGHGIFVRQSQIQV 103

>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human Dynactin-1 (P150- Glued) Length = 97

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
            + + VG R ++     R GTV +VG T F++G WVGV LDE  GKN+GTV+  KYF C+
Sbjct: 10  ARPLRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD 68
Query: 220 ENYGMFVKPGRLTI 233
           E +G+FV+  ++ +
Sbjct: 69  EGHGIFVRQSQIQV 82

>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 93

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
           + + VG R ++     R GTV +VG T F++G WVGV LDE  GKN+GTV+  KYF C+E
Sbjct: 11  RPLRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69
Query: 221 NYGMFVKPGRLTI 233
            +G+FV+  ++ +
Sbjct: 70  GHGIFVRQSQIQV 82

>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of Human Dynactin-1 (P150-Glued) In Complex With Human Eb1 C- Terminal Hexapeptide Length = 97

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
           + + VG R ++     R GTV +VG T F++G WVGV LDE  GKN+GTV+  KYF C+E
Sbjct: 11  RPLRVGSRVEVIGKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDE 69
Query: 221 NYGMFVKPGRLTI 233
            +G+FV+  ++ +
Sbjct: 70  GHGIFVRQSQIQV 82

>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 71

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
           + VG R ++     R GTV +VG T F++G WVGV LDE  GKN+GTV+  KYF C+E +
Sbjct: 1   LRVGSRVEVIGKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 59
Query: 223 GMFVKPGRLTI 233
           G+FV+  ++ +
Sbjct: 60  GIFVRQSQIQV 70

>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 102

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
           +++G R  I    V  GT+ F G T+F+SG W G++LDEP GKNNG+V  V+YF+C   Y
Sbjct: 25  LKLGDRVVIAGQKV--GTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKY 82
Query: 223 GMFV 226
           G+F 
Sbjct: 83  GIFA 86

>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse 1700024k14rik Hypothetical Protein Length = 91

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 180 TVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232
           TV +VG T F+SG+W+G++L    GKN+G V D +YF C+ NYG+ V+P R+T
Sbjct: 29  TVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVT 81

>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human Clip- 115CYLN2 Length = 84

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFV 226
           G V +VGET F+ G W GV+LDEP GKN+G V   +YF+C   +G+F 
Sbjct: 22  GVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFA 69

>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170-Related Protein Clipr59 Length = 95

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT 232
           GT+ F G T+F+SG WVGV+LDEP GKN+G+V  V+YF C    G+F    +++
Sbjct: 31  GTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKIS 84

>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Kinesin- Like Protein Kif13b Length = 100

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRL 231
           G V +VG   F  G WVGV+LD P GKN+G++   +YF C   YG+ V+P R+
Sbjct: 38  GVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRV 90

>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse Clip170-Related 59kda Protein Clipr-59 Length = 102

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 179 GTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRL-TIGDFP 237
           G V F G+T F+ G W G++LD+P GK++G+V  V+YF C   +G+F    R+  IG  P
Sbjct: 40  GIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP 99

>pdb|1V6E|A Chain A, Solution Structure Of A N-Terminal Ubiquitin-Like Domain In Mouse Tubulin-Specific Chaperone B Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 42 TIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV 96
          TI E K KLEL+ G  +S M + LY  +    S L     LLG YPV++   + V
Sbjct: 30 TIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	1e-38
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	3e-38
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	9e-38
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	3e-36
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	8e-36
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	9e-36
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	1e-35
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	2e-35
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	2e-35
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	6e-35
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	6e-35
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	6e-35
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	1e-34
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	3e-34
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	7e-34
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	2e-33
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	2e-33
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	4e-33
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	1e-32
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	1e-27
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-15
2kj6_A	97	Tubulin folding cofactor B; methods development, N	3e-14
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	5e-14
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	1e-12
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	5e-12

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 172

 Score =  131 bits (331), Expect = 1e-38
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 157 ENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYF 216
           +   +++++G R  +  +  + G V F+GET F+ G W GV+LDEP GKN+G V   +YF
Sbjct: 33  KKGERELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYF 90

Query: 217 ECEENYGMFVKPGRLTIGDFPVLDP 241
           +C+  YG+F    ++T   FP   P
Sbjct: 91  QCQPKYGLFAPVHKVTKIGFPSTTP 115

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A Length = 95

 Score =  127 bits (322), Expect = 3e-38
 Identities = 47/93 (50%), Positives = 60/93 (64%), Gaps = 3/93 (3%)

Query: 155 LEENILKDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKD 212
           L E   K+I VG RC++       R G V +VG TKF  GVWVGVK DEP GKN+G+V  
Sbjct: 4   LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAG 63

Query: 213 VKYFECEENYGMFVKPGRLTIGDFPVLDPFDEL 245
           V+YF+C+  YG FV+P  + +GDFP L   DE+
Sbjct: 64  VRYFDCDPKYGGFVRPVDVKVGDFPELS-IDEI 95

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A Length = 90

 Score =  126 bits (319), Expect = 9e-38
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           ++++G R  +  +  + G V F+GET F+ G W GV+LDEP GKN+G V   +YF+C+  
Sbjct: 1   ELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPK 58

Query: 222 YGMFVKPGRLTIGDFPVLDP 241
           YG+F    ++T   FP   P
Sbjct: 59  YGLFAPVHKVTKIGFPSTTP 78

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 141

 Score =  124 bits (313), Expect = 3e-36
 Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
           +E  + D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+Y
Sbjct: 58  QEEFVDDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRY 115

Query: 216 FECEENYGMFVKPGRLTIGDFP 237
           F+CE   G+F +P +LT     
Sbjct: 116 FQCEPLKGIFTRPSKLTRKVSG 137

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 84

 Score =  121 bits (306), Expect = 8e-36
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
             + +G R  +  +  + G V +VGET F+ G W GV+LDEP GKN+G V   +YF+C  
Sbjct: 6   SGLRLGDRVLVGGT--KTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP 63

Query: 221 NYGMFVKPGRLT-IGDFP 237
            +G+F    ++  IG  P
Sbjct: 64  KFGLFAPIHKVIRIGSGP 81

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A Length = 95

 Score =  121 bits (306), Expect = 9e-36
 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
            ++ L D  VG+R  +N    + G V ++GET+F+ G W GV LD+P GKN+G V  V+Y
Sbjct: 12  GDDFLGDFVVGERVWVNGV--KPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRY 69

Query: 216 FECEENYGMFVKPGRLTIGDFP 237
           FEC    G+F +P +LT     
Sbjct: 70  FECPALQGIFTRPSKLTRQPSG 91

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 100

 Score =  121 bits (305), Expect = 1e-35
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 151 KDKCLEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTV 210
            D    + + + +  G+   +     + G V +VG   F  G WVGV+LD P GKN+G++
Sbjct: 12  SDSEEADEVPEWLREGEFVTVGAH--KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSI 69

Query: 211 KDVKYFECEENYGMFVKPGRLTIGDFP 237
              +YF C   YG+ V+P R+      
Sbjct: 70  GGKQYFRCNPGYGLLVRPSRVRRATSG 96

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score =  121 bits (304), Expect = 2e-35
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 155 LEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVK 214
           L++      EVG +  +     + G V F G+T F+ G W G++LD+P GK++G+V  V+
Sbjct: 18  LQQREGAKAEVGDQVLVAGQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVR 75

Query: 215 YFECEENYGMFVKPGRLT-IGDFP 237
           YF C   +G+F    R+  IG  P
Sbjct: 76  YFTCAPRHGVFAPASRIQRIGSGP 99

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 122

 Score =  121 bits (305), Expect = 2e-35
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
           L D  +G R  I   +V+ G + F GET F+ G W GV+LD+P G NNGT   + YFEC+
Sbjct: 29  LFDFHIGDRVLI--GNVQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK 86

Query: 220 ENYGMFVKPGRLTIGDFPVLDPFDELDE 247
           E +G+F  P +++       D  D  ++
Sbjct: 87  EKHGIFAPPQKISHIPENFDDYVDINED 114

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 112

 Score =  120 bits (302), Expect = 6e-35
 Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
            E   + + VG R ++       GTV +VG T F++G WVGV LDE  GKN+GTV+  KY
Sbjct: 27  AEASARPLRVGSRVEVIGKG-HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKY 85

Query: 216 FECEENYGMFVKPGRLTIGD 235
           F C+E +G+FV+  ++ + +
Sbjct: 86  FTCDEGHGIFVRQSQIQVFE 105

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P Length = 93

 Score =  119 bits (300), Expect = 6e-35
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
            E   + + VG R ++       GTV +VG T F++G WVGV LDE  GKN+GTV+  KY
Sbjct: 6   AEASARPLRVGSRVEVIGKG-HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKY 64

Query: 216 FECEENYGMFVKPGRLTIGDFP 237
           F C+E +G+FV+  ++ + +  
Sbjct: 65  FTCDEGHGIFVRQSQIQVFEDG 86

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1 Length = 113

 Score =  120 bits (301), Expect = 6e-35
 Identities = 47/109 (43%), Positives = 63/109 (57%), Gaps = 7/109 (6%)

Query: 131 MKQKEERLRREALLKENNEEKDKCLEENILKDIEVGKRCKIN--DSDVRFGTVMFVGETK 188
              +E R ++EA   +   E     E+     I VG RC++   D  +R GTVM+VG T 
Sbjct: 6   SGNEELRAQQEAEAAQRLSE-----EKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTD 60

Query: 189 FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
           F  G WVGV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GD  
Sbjct: 61  FKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1 Length = 86

 Score =  118 bits (298), Expect = 1e-34
 Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE  
Sbjct: 2   DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 222 YGMFVKPGRLTIGDFPVLDP 241
            G+F +P +LT       + 
Sbjct: 60  KGIFTRPSKLTRKVQAEDEA 79

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 96

 Score =  117 bits (296), Expect = 3e-34
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
            ++ +G+R  +     R GT+ F G T F+ G W G++L++P GKN+G+V  V+YF C  
Sbjct: 9   GELRLGERVLVVGQ--RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSP 66

Query: 221 NYGMFVKPGRLTIGD 235
            YG+F  P R+    
Sbjct: 67  RYGIFAPPSRVQRVT 81

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score =  117 bits (294), Expect = 7e-34
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
             +++G R  I     + GT+ F G T+F+SG W G++LDEP GKNNG+V  V+YF+C  
Sbjct: 23  LGLKLGDRVVIAGQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80

Query: 221 NYGMFVKPGRLT-IGDFP 237
            YG+F    +++ + D  
Sbjct: 81  KYGIFAPLSKISKLKDSG 98

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 91

 Score =  115 bits (289), Expect = 2e-33
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
            +  G +  +  S+    TV +VG T F+SG+W+G++L    GKN+G V D +YF C+ N
Sbjct: 12  KLHEGSQVLLTSSN-EMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPN 70

Query: 222 YGMFVKPGRLTIGDFP 237
           YG+ V+P R+T     
Sbjct: 71  YGVLVRPSRVTYRGIS 86

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 104

 Score =  115 bits (290), Expect = 2e-33
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPF-GKNNGTVKDVKYFECE 219
             +EVG   ++ ++   +G + ++G+    + V  G++L++   G  +GT +  +YF C 
Sbjct: 16  HGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA 75

Query: 220 ENYGMFVKPGRLT-IGDFPVLDP 241
               +FVK         F  L P
Sbjct: 76  LKKALFVKLKSCRPDSRFASLQP 98

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score =  114 bits (288), Expect = 4e-33
 Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
             + +G R  ++    + GT+ F G T+F+SG WVGV+LDEP GKN+G+V  V+YF C  
Sbjct: 15  LGLRLGDRVLLDGQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP 72

Query: 221 NYGMFVKPGRLTIGD 235
             G+F    +++   
Sbjct: 73  KQGLFASVSKISKAV 87

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A Length = 72

 Score =  112 bits (283), Expect = 1e-32
 Identities = 33/71 (46%), Positives = 49/71 (69%), Gaps = 2/71 (2%)

Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
           D  VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE  
Sbjct: 2   DFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPL 59

Query: 222 YGMFVKPGRLT 232
            G+F +P +LT
Sbjct: 60  KGIFTRPSKLT 70

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score =  101 bits (252), Expect = 1e-27
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 161 KDIEVGKRCKI---NDSDVRFGTVMFVG---ETKFSSGVWVGVKLDEPF---GKNNGTVK 211
             I+VG   K+   +  +   G V F G     +  SG++ GV+L E     G  +G  +
Sbjct: 6   SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQ 65

Query: 212 DVKYFECEENYGMFVKPGRLTIGDFP 237
             + F+C+E+ G+FV   +L + +  
Sbjct: 66  GKQLFQCDEDCGVFVALDKLELIESG 91

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 69.9 bits (171), Expect = 2e-15
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%)

Query: 15  GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
              +L IT +          KK     ++ +LK+KLEL+ G    +M I L++ +  L  
Sbjct: 5   EVYDLEITTNATDFPM---EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKG 61

Query: 75  HLSDNSMLLGQYPVENEMTLFV-----EGNYLTDGLESSETKYVLPEEKYKEHKENLKNF 129
            L+D +  L    V +   +             D  ES   KY + ++ Y +  ++++ +
Sbjct: 62  ELTDGAKSLKDLGVRDGYRIHAVDVTGGNEDFKD--ESMVEKYEMSDDTYGKRTDSVRAW 119

Query: 130 MMK 132
             K
Sbjct: 120 KKK 122

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 65.7 bits (160), Expect = 3e-14
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
           +V L+IT++  K  S     +     ++  +K+KL    G   ++M + LY+ +   V+
Sbjct: 13 DSVHLHITHANLK--SFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVA 70

Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
           LSD+S  LG +   +   L +
Sbjct: 71 VLSDDSRPLGFFSPFDGFRLHI 92

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.9 bits (158), Expect = 5e-14
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
            V ++I++S +   S    K+   + TI E K KLEL+ G  +S M + LY  +    S
Sbjct: 6  SGVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYS 62

Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
           L     LLG YPV++   + V
Sbjct: 63 KLDQEDALLGSYPVDDGCRIHV 84

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 92

 Score = 61.3 bits (148), Expect = 1e-12
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 160 LKDIEVGKRCKINDSD-VRFGTVMFVGE--TKFSSGVWVGVKLDEPFGKNNGTVKDVKYF 216
              +E+  R  +   + +  GTV+F      K S G +VGV +D P G  +G    V+  
Sbjct: 7   GPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLC 66

Query: 217 ECEE-NYGMFVKPGRL 231
                   + +    +
Sbjct: 67  SFACVESTILLHINDI 82

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} Length = 95

 Score = 59.5 bits (144), Expect = 5e-12
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVS 74
            +++ ++NS +   +     KL  + T+ +LK KLE+LTG  +  M + ++  +   VS
Sbjct: 14 DFIKVNVSNSHNDAVA--FEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGD-TCVS 70

Query: 75 HLSDNSMLLGQYPVENEMTLFV 96
           + +N   LG Y   + + L V
Sbjct: 71 TMDNNDAQLGYYANSDGLRLHV 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	100.0
4b6m_A	84	Tubulin-specific chaperone, putative; structural p	100.0
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	100.0
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.97
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.97
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	99.96
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	99.96
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	99.96
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.96
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	99.96
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.96
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	99.95
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.95
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	99.95
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.95
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	99.95
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	99.95
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	99.95
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	99.95
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	99.95
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	99.94
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	99.94
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.94
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.88
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.83
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.77
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.74
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.74
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.4
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.37
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.35
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.34
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.33
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.32
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.32
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.32
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.31
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.31
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.3
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.3
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.29
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.28
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.28
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.28
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.28
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.27
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.27
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.26
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.26
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.25
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.25
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.25
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.24
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.24
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.23
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.23
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.23
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.23
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.23
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.23
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.22
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.22
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.22
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.21
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.21
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.2
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.2
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.2
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.19
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.19
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.18
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.18
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.18
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.17
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.16
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.15
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.15
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.13
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.11
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.11
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.11
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.11
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.1
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.09
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.08
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.07
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	98.66
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.07
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.06
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.05
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.05
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.04
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.03
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.02
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.01
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	98.99
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	98.98
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	98.96
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	98.96
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	98.95
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	98.94
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	98.91
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.87
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	98.87
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	98.86
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	98.83
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	98.73
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.58
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	98.45
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.36
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.3
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.28
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.27
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.25
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.16
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.1
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	97.99
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.54
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	97.44
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	97.42
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.35
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	97.18
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	96.57
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	96.43
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	96.23
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	96.01
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	95.83
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	95.74
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	95.45
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.43
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.96
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	94.9
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	94.55
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	94.48
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	93.15
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	93.07
1pqs_A	77	Cell division control protein 24; alpha and beta p	92.38
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	91.82
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	91.62
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	91.52
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	91.21
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	91.06
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	90.55
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	90.33
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	87.91
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	87.6
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	86.77
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	81.55
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	80.73

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A

Probab=100.00  E-value=4.3e-35  Score=226.05  Aligned_cols=88  Identities=52%  Similarity=1.026  Sum_probs=79.8

Q ss_pred             hhhhcCCCccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905        156 EENILKDIEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI  233 (248)
Q Consensus       156 ~~~~~~~~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  233 (248)
                      ++.++..+.||+||+|.  +++.++|||||+|++++++|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++
T Consensus         5 ~~~~~~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~~v~~   84 (95)
T 1lpl_A            5 NEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVKV   84 (95)
T ss_dssp             HHHHHHTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEEE
T ss_pred             hhhhhhcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcHHHceE
Confidence            33455679999999997  3336999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCc
Q psy13905        234 GDFPVLDPFDE  244 (248)
Q Consensus       234 g~fp~~d~~de  244 (248)
                      |+||++| +||
T Consensus        85 gdfp~~d-~~~   94 (95)
T 1lpl_A           85 GDFPELS-IDE   94 (95)
T ss_dssp             SCCCCCC-CSC
T ss_pred             CCCCCCC-ccc
Confidence            9999988 444

>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}

Probab=100.00  E-value=6.9e-34  Score=214.19  Aligned_cols=81  Identities=44%  Similarity=0.918  Sum_probs=73.8

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccC-CCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETK-FSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPV  238 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~-~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~  238 (248)
                      +..|+||+||+|... .++|||||+|+++ +++|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++|||||
T Consensus         3 m~~i~vG~Rv~v~~~-~~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~~~~G~Fvr~~~v~~gd~Pp   81 (84)
T 4b6m_A            3 METIHVGDRCLCRPG-DRLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPNYGGFLRPDQVEVGDFPP   81 (84)
T ss_dssp             --CCCTTCEEEETTT-TEEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCCTTSEEEECGGGEEECCCCC
T ss_pred             ccCcccCCEEEEcCC-CeEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecCCCeEEEecHHHeEECCcCC
Confidence            457999999999754 5899999999975 58899999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy13905        239 LDP  241 (248)
Q Consensus       239 ~d~  241 (248)
                      .++
T Consensus        82 e~f   84 (84)
T 4b6m_A           82 EVF   84 (84)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            763

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1

Probab=100.00  E-value=6.5e-34  Score=225.61  Aligned_cols=88  Identities=48%  Similarity=0.910  Sum_probs=80.7

Q ss_pred             hhhhhhhcCCCccCCEEEEc--CCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCC
Q psy13905        153 KCLEENILKDIEVGKRCKIN--DSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGR  230 (248)
Q Consensus       153 ~~~~~~~~~~~~vG~Rv~v~--~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~  230 (248)
                      +++++..+..+.||+||.|.  +.+.++|||||||++++.+|.|+|||||+|.||||||++|+|||+|+|+||+||||++
T Consensus        23 ~~~~~~~~~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~  102 (113)
T 1whg_A           23 LSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSA  102 (113)
T ss_dssp             THHHHHHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGG
T ss_pred             hhHhhhhhhcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeCCCeEEEECHHH
Confidence            34555677889999999996  3346999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCC
Q psy13905        231 LTIGDFPVLD  240 (248)
Q Consensus       231 v~~g~fp~~d  240 (248)
                      |++||||+++
T Consensus       103 v~~gdfp~~~  112 (113)
T 1whg_A          103 VTVGDSGPSS  112 (113)
T ss_dssp             EEEEECCSSC
T ss_pred             eEECCCCCCC
Confidence            9999999986

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.97  E-value=4.3e-32  Score=217.32  Aligned_cols=113  Identities=24%  Similarity=0.390  Sum_probs=73.1

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +.|+|.|+++...+..   +++|++++||++||+||+.++||||++|||+|.+.+|+.+..|++|+++|++|+|++|++|
T Consensus         5 ~~v~l~V~~~~~~~~~---e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~i   81 (122)
T 1t0y_A            5 EVYDLEITTNATDFPM---EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI   81 (122)
T ss_dssp             CEEEEEEEESSCCSCE---EEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEE
T ss_pred             CEEEEEEEECCCCccE---EEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEE
Confidence            4799999987664335   9999999999999999999999999999999996556765567789999999999999999


Q ss_pred             EEEeCC-----CCCCCCCceeeecCCHHHHhhhhHHHHHHHHH
Q psy13905         95 FVEGNY-----LTDGLESSETKYVLPEEKYKEHKENLKNFMMK  132 (248)
Q Consensus        95 hVvD~~-----l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~  132 (248)
                      ||+|++     |+|  +|+|+||+||+|+|++|+||||+|||+
T Consensus        82 hvvd~~p~~~~~~d--~s~v~ky~~~~e~Y~~r~~tv~~~k~~  122 (122)
T 1t0y_A           82 HAVDVTGGNEDFKD--ESMVEKYEMSDDTYGKRTDSVRAWKKK  122 (122)
T ss_dssp             EEEECTTCCCC--------------------------------
T ss_pred             EEEeCCCCCCCccc--cccceeeecCHHHHhcchhHHHHHhhC
Confidence            999965     888  999999999999999999999999985

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A

Probab=99.97  E-value=3.7e-31  Score=202.10  Aligned_cols=78  Identities=41%  Similarity=0.913  Sum_probs=73.0

Q ss_pred             CCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCCCCC
Q psy13905        162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDP  241 (248)
Q Consensus       162 ~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~d~  241 (248)
                      +++||+||.|.+  .++|||||+|++++.+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|++++||++.+
T Consensus         1 ~l~vG~rV~V~g--~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~p~~~p   78 (90)
T 2e3h_A            1 ELKIGDRVLVGG--TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTP   78 (90)
T ss_dssp             CCCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEEETTSCCC--
T ss_pred             CCcCCCEEEECC--CCEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcHHHeEECCCCCCCc
Confidence            478999999976  489999999999999999999999999999999999999999999999999999999999999876

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.96  E-value=6e-30  Score=199.31  Aligned_cols=78  Identities=37%  Similarity=0.736  Sum_probs=73.2

Q ss_pred             hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc-cCCCC
Q psy13905        159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT-IGDFP  237 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~fp  237 (248)
                      ++..++||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+ +++||
T Consensus        22 ~~~~~~VG~RV~V~g--~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~d~p   99 (102)
T 1whh_A           22 EGAKAEVGDQVLVAG--QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP   99 (102)
T ss_dssp             SCCSSCTTSEEEETT--TEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred             ccccCcCCCEEEECC--CcEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecHHHeEECCCCC
Confidence            456799999999976  489999999999999999999999999999999999999999999999999999998 57898


Q ss_pred             C
Q psy13905        238 V  238 (248)
Q Consensus       238 ~  238 (248)
                      +
T Consensus       100 ~  100 (102)
T 1whh_A          100 S  100 (102)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A

Probab=99.96  E-value=1.3e-29  Score=186.11  Aligned_cols=69  Identities=48%  Similarity=0.983  Sum_probs=65.8

Q ss_pred             CCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905        162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT  232 (248)
Q Consensus       162 ~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  232 (248)
                      .|+||+||+|.+  .++|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|.
T Consensus         2 ~~~vG~rv~v~g--~~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~~kvs   70 (72)
T 3rdv_A            2 DFRVGERVWVNG--NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLT   70 (72)
T ss_dssp             CCCTTCEEEETT--TEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECGGGEE
T ss_pred             CcccCCEEEECC--CCEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecHHHcc
Confidence            589999999986  379999999999999999999999999999999999999999999999999999985

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=1.8e-29  Score=212.13  Aligned_cols=81  Identities=40%  Similarity=0.860  Sum_probs=76.5

Q ss_pred             hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCC
Q psy13905        159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPV  238 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~  238 (248)
                      ....|+||+||+|.+  .++|+|||||++++.+|.|+|||||+|.|||||+|+|+|||+|+|+||+||||.+|.+++||+
T Consensus        35 ~~~~l~VG~RV~V~g--~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kV~~~dfP~  112 (172)
T 2cp6_A           35 GERELKIGDRVLVGG--TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPS  112 (172)
T ss_dssp             CSSCCCSSCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSS
T ss_pred             CCccCccCCEEEECC--CceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEechHHeEECCcCC
Confidence            345799999999976  489999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy13905        239 LDP  241 (248)
Q Consensus       239 ~d~  241 (248)
                      +.+
T Consensus       113 ~~p  115 (172)
T 2cp6_A          113 TTP  115 (172)
T ss_dssp             CCS
T ss_pred             CCc
Confidence            876

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1

Probab=99.96  E-value=2.5e-29  Score=190.49  Aligned_cols=75  Identities=44%  Similarity=0.868  Sum_probs=69.0

Q ss_pred             CCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC-CCCC
Q psy13905        162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG-DFPV  238 (248)
Q Consensus       162 ~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~  238 (248)
                      .|+||+||.|.+  .++|||||+|++++.+|.|+|||||+|.||||||++|+|||+|+|+||+||||++|... .|++
T Consensus         2 ~~~vG~rv~v~g--~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~~~v~~~~~~~~   77 (86)
T 2e3i_A            2 DFRVGERVWVNG--NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRKVQAED   77 (86)
T ss_dssp             CCCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEESSCCC--
T ss_pred             CccCCCEEEECC--CcEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcHHHcccccchhh
Confidence            589999999976  48999999999999999999999999999999999999999999999999999999876 4654

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P

Probab=99.96  E-value=2.2e-29  Score=193.45  Aligned_cols=76  Identities=42%  Similarity=0.770  Sum_probs=69.2

Q ss_pred             hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      ..+..+.||+||.|.+. .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.
T Consensus         8 ~~~~~~~vG~rv~v~~~-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~~~v~~~   83 (93)
T 1txq_A            8 ASARPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVF   83 (93)
T ss_dssp             ---CCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECGGGEEEC
T ss_pred             cccccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHeEEc
Confidence            44567999999999753 58999999999999999999999999999999999999999999999999999999875

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A

Probab=99.96  E-value=2.4e-29  Score=193.80  Aligned_cols=77  Identities=45%  Similarity=0.899  Sum_probs=71.6

Q ss_pred             hhhhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       156 ~~~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      .+..+..++||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|..+
T Consensus        12 ~~~~~~~~~vG~rV~V~g--~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~~kv~~~   88 (95)
T 2cp2_A           12 GDDFLGDFVVGERVWVNG--VKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKLTRQ   88 (95)
T ss_dssp             CBSSCCSCCTTCEEEGGG--SCEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECGGGCCSS
T ss_pred             hhhhhhcCcCCCEEEECC--ceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcHHHCccC
Confidence            345667899999999986  48999999999999999999999999999999999999999999999999999999865

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=5.5e-29  Score=194.67  Aligned_cols=83  Identities=25%  Similarity=0.471  Sum_probs=75.3

Q ss_pred             hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEE-cCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC-C
Q psy13905        158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKL-DEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG-D  235 (248)
Q Consensus       158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVel-Dep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~  235 (248)
                      .....|.||+||+|.+...++|||||||++++++|.|+|||| |+|.|||||+++|+|||+|+|+||+||||++|..+ .
T Consensus        13 ~~~~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~~~v~~~~r   92 (104)
T 1ixd_A           13 GNSHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSR   92 (104)
T ss_dssp             TSSSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCT
T ss_pred             CCCcccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcHHHceeccc
Confidence            345679999999998533589999999999999999999999 89999999999999999999999999999999988 4


Q ss_pred             CCCCC
Q psy13905        236 FPVLD  240 (248)
Q Consensus       236 fp~~d  240 (248)
                      |..++
T Consensus        93 f~~~~   97 (104)
T 1ixd_A           93 FASLQ   97 (104)
T ss_dssp             TCCCC
T ss_pred             cccCC
Confidence            88765

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=8.9e-29  Score=186.74  Aligned_cols=74  Identities=36%  Similarity=0.801  Sum_probs=68.7

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGD  235 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~  235 (248)
                      ...+.||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|..-.
T Consensus         5 ~~~~~vG~rv~v~g--~~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~~kv~~~~   78 (84)
T 2cp3_A            5 SSGLRLGDRVLVGG--TKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKVIRIG   78 (84)
T ss_dssp             SCSCCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEGGGEEECC
T ss_pred             ccccccCCEEEECC--CCeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcHHHeEEcc
Confidence            35699999999976  489999999999999999999999999999999999999999999999999999997543

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.95  E-value=5.1e-29  Score=190.61  Aligned_cols=77  Identities=38%  Similarity=0.767  Sum_probs=70.8

Q ss_pred             hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCC
Q psy13905        159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDF  236 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~f  236 (248)
                      ....++||+||+|.+. .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++-..
T Consensus         9 ~~~~~~vG~rV~V~~~-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~~~~G~Fvr~~~v~~~~~   85 (91)
T 1whk_A            9 GTVKLHEGSQVLLTSS-NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTYRGI   85 (91)
T ss_dssp             CCCCCCSSCEEEESSS-CCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEECCCC
T ss_pred             CCccccCCCEEEECCC-CeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecCCCeEEEEchHHcEEcCC
Confidence            4567999999999753 5899999999999999999999999999999999999999999999999999999986543

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=7.4e-29  Score=191.29  Aligned_cols=79  Identities=30%  Similarity=0.482  Sum_probs=71.0

Q ss_pred             cCCCccCCEEEEcCC--C-CceeEEEEecccC---CCCceEEEEEEcCC---CCCCceeEcCeEeeecCCCceeeEcCCC
Q psy13905        160 LKDIEVGKRCKINDS--D-VRFGTVMFVGETK---FSSGVWVGVKLDEP---FGKNNGTVKDVKYFECEENYGMFVKPGR  230 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~--~-~~~G~vryvG~~~---~~~g~wvGVelDep---~GkndGs~~G~rYF~c~~~~G~Fv~~~~  230 (248)
                      +..+.||+||+|...  + .++|||||+|+++   +.+|.|+|||||+|   .|||||+++|+|||+|+|+||+||||++
T Consensus         5 ~~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~~~   84 (95)
T 1whl_A            5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDK   84 (95)
T ss_dssp             CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGG
T ss_pred             cccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcHHH
Confidence            467999999999632  1 4899999999998   79999999999999   8999999999999999999999999999


Q ss_pred             CccCC-CCC
Q psy13905        231 LTIGD-FPV  238 (248)
Q Consensus       231 v~~g~-fp~  238 (248)
                      |++.+ .|.
T Consensus        85 v~~~~~~p~   93 (95)
T 1whl_A           85 LELIESGPS   93 (95)
T ss_dssp             EEECCSCSC
T ss_pred             eEEcCcCCC
Confidence            99875 553

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1.1e-28  Score=197.52  Aligned_cols=77  Identities=43%  Similarity=0.869  Sum_probs=71.5

Q ss_pred             hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCC
Q psy13905        158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP  237 (248)
Q Consensus       158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp  237 (248)
                      ..+..+.||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|.  +||
T Consensus        27 ~~~~~l~VG~RV~V~g--~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~~kv~--~~p  102 (122)
T 2coz_A           27 DELFDFHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKIS--HIP  102 (122)
T ss_dssp             CSCSSCCTTEEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEE--CCC
T ss_pred             cccccCcCCCEEEECC--CcEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecHHHCc--cCC
Confidence            4566799999999976  489999999999999999999999999999999999999999999999999999997  566


Q ss_pred             C
Q psy13905        238 V  238 (248)
Q Consensus       238 ~  238 (248)
                      +
T Consensus       103 e  103 (122)
T 2coz_A          103 E  103 (122)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1.3e-28  Score=194.70  Aligned_cols=76  Identities=42%  Similarity=0.783  Sum_probs=70.8

Q ss_pred             hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCC
Q psy13905        159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGD  235 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~  235 (248)
                      .+..+.||+||.|.+. .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|++.+
T Consensus        30 ~~~~l~VG~RV~V~~~-g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~~~v~~~~  105 (112)
T 2coy_A           30 SARPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQVFE  105 (112)
T ss_dssp             SCCCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECGGGEEECC
T ss_pred             ccccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEchHHeEEcC
Confidence            4457999999999753 589999999999999999999999999999999999999999999999999999999764

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}

Probab=99.95  E-value=6.9e-29  Score=191.61  Aligned_cols=73  Identities=38%  Similarity=0.872  Sum_probs=67.1

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      +..++||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus         8 ~~~~~vG~rV~V~g--~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~~v~~~   80 (96)
T 2z0w_A            8 EGELRLGERVLVVG--QRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRV   80 (96)
T ss_dssp             ---CCTTCCCCCCC--CCCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECGGGCCCT
T ss_pred             cccCCCCCEEEECC--CcEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcHHHceec
Confidence            34699999999976  48999999999999999999999999999999999999999999999999999999864

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.95  E-value=1.2e-28  Score=189.93  Aligned_cols=72  Identities=40%  Similarity=0.824  Sum_probs=67.9

Q ss_pred             CCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       161 ~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      ..++||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|...
T Consensus        15 ~~~~vG~RV~V~g--~~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~~kv~~~   86 (95)
T 2cp0_A           15 LGLRLGDRVLLDG--QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA   86 (95)
T ss_dssp             HTCCTTCEEEETT--TEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred             cCCCCCCEEEECC--CCeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcHHHeecC
Confidence            4699999999976  48999999999999999999999999999999999999999999999999999999753

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.95  E-value=2.4e-28  Score=190.26  Aligned_cols=77  Identities=40%  Similarity=0.782  Sum_probs=70.4

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC-CCCC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG-DFPV  238 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp~  238 (248)
                      +..++||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+|||+++|..- ++++
T Consensus        22 ~~~~~vG~RV~V~g--~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~~kv~~~~~~~~   99 (102)
T 1whj_A           22 SLGLKLGDRVVIAG--QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISKLKDSGP   99 (102)
T ss_dssp             HHTCCTTCEEEETT--TEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEESSSCCC
T ss_pred             hhcCcCCCEEEECC--CCEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeHHHccccCCCCC
Confidence            34699999999976  48999999999999999999999999999999999999999999999999999999854 4544

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.94  E-value=6.5e-28  Score=197.15  Aligned_cols=77  Identities=44%  Similarity=0.907  Sum_probs=71.6

Q ss_pred             hhhhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       156 ~~~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      .++.+..|.||+||+|.+  .++|+|||+|++++.+|.|+|||||+|.|||||+|+|+|||+|+|+||+|||+++|..+
T Consensus        58 ~~~~~~~l~VG~RV~V~G--~~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp~kv~~~  134 (141)
T 2cp5_A           58 QEEFVDDFRVGERVWVNG--NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTRK  134 (141)
T ss_dssp             CCCCCCCCCTTCEEEETT--SCEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECGGGEESS
T ss_pred             hhhhhhcCcCCCEEEECC--CcEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEechHHeeec
Confidence            335567899999999986  48999999999999999999999999999999999999999999999999999999876

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.94  E-value=6.9e-28  Score=187.07  Aligned_cols=78  Identities=35%  Similarity=0.753  Sum_probs=70.9

Q ss_pred             hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCC-C
Q psy13905        158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGD-F  236 (248)
Q Consensus       158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~-f  236 (248)
                      .....|+||+||.|.+  .++|||||+|++++.+|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|+.-. .
T Consensus        19 ~~~~~l~vG~rV~V~g--~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~~~v~~~~~~   96 (100)
T 2cow_A           19 EVPEWLREGEFVTVGA--HKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRATSG   96 (100)
T ss_dssp             CCCSSCCTTCEEECSS--SCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEECCCC
T ss_pred             cCCccccCCCEEEECC--CcEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecHHHeeECCCC
Confidence            3345689999999975  489999999999999999999999999999999999999999999999999999998653 4


Q ss_pred             C
Q psy13905        237 P  237 (248)
Q Consensus       237 p  237 (248)
                      |
T Consensus        97 p   97 (100)
T 2cow_A           97 P   97 (100)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.94  E-value=3e-27  Score=180.08  Aligned_cols=73  Identities=21%  Similarity=0.340  Sum_probs=65.6

Q ss_pred             hcCCCccCCEEEEcCC-CCceeEEEEecccCCC--CceEEEEEEcCCCCCCceeEcCeEee-ecCCCceeeEcCCCC
Q psy13905        159 ILKDIEVGKRCKINDS-DVRFGTVMFVGETKFS--SGVWVGVKLDEPFGKNNGTVKDVKYF-ECEENYGMFVKPGRL  231 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~-~~~~G~vryvG~~~~~--~g~wvGVelDep~GkndGs~~G~rYF-~c~~~~G~Fv~~~~v  231 (248)
                      ++..|+||+||+|... ..+||||||+|++++.  +|+|||||||||.|||||+++|+||| .|+++||+||++..+
T Consensus         6 ~~~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~~~~g~fV~~~d~   82 (92)
T 1whm_A            6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDI   82 (92)
T ss_dssp             CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGE
T ss_pred             cccCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccCCCcceEcccccC
Confidence            4557999999999733 2599999999999874  69999999999999999999999999 999999999998766

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.88  E-value=1.5e-22  Score=152.93  Aligned_cols=83  Identities=19%  Similarity=0.230  Sum_probs=75.2

Q ss_pred             ceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         15 GTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        15 ~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ++|+|.||++... +..   |+||++++||.+||+||+.++||||++|||+|++.++.+...+++|+++|++|+|++|++
T Consensus         1 s~V~v~iths~~~~~~~---E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~   77 (86)
T 4b6w_A            1 SVVKVSLTHSASRMRVP---EKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFV   77 (86)
T ss_dssp             CEEEEEEEETTCSCCEE---EEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCE
T ss_pred             CEEEEEEEEcCCCCeEE---EEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCE
Confidence            5799999976544 445   999999999999999999999999999999999888887777889999999999999999


Q ss_pred             EEEEeCC
Q psy13905         94 LFVEGNY  100 (248)
Q Consensus        94 IhVvD~~  100 (248)
                      |||+|++
T Consensus        78 ihlvd~~   84 (86)
T 4b6w_A           78 IHVVDLQ   84 (86)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999974

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.83  E-value=9.9e-21  Score=146.15  Aligned_cols=86  Identities=24%  Similarity=0.304  Sum_probs=75.9

Q ss_pred             CCCceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      -++++|+|+||++... +..   |++|++++||++||+||+.++||||++|||+|++.+|+.+..|++|+++|++|+|++
T Consensus        10 ~~~~~v~l~It~s~~~~~~~---e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~   86 (97)
T 2kj6_A           10 HGDDSVHLHITHANLKSFSA---DARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFD   86 (97)
T ss_dssp             CCCCCEEEEEEETTSSCCCE---EEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCS
T ss_pred             CCCceEEEEEEECCCCceEE---EEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCC
Confidence            4778999999986653 335   999999999999999999999999999999999665666566778999999999999


Q ss_pred             CcEEEEEeCC
Q psy13905         91 EMTLFVEGNY  100 (248)
Q Consensus        91 G~~IhVvD~~  100 (248)
                      |++|||+|++
T Consensus        87 g~~Ihlvd~~   96 (97)
T 2kj6_A           87 GFRLHIIDLD   96 (97)
T ss_dssp             CCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999999975

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.77  E-value=7.9e-19  Score=134.86  Aligned_cols=83  Identities=27%  Similarity=0.423  Sum_probs=72.2

Q ss_pred             CCceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         13 GGGTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      ..+.|+|+|+++..+ +..   ++++++++||++||+||+.++||||++|||+|.+ +|+.+..|++|+++|++|+|++|
T Consensus        12 ~~~~v~l~It~s~~~~~~~---~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~D~~tL~~Y~i~~g   87 (95)
T 2kjr_A           12 KSDFIKVNVSNSHNDAVAF---EVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDNNDAQLGYYANSDG   87 (95)
T ss_dssp             CCCEEEEEEEESSCSCEEE---EEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCCTTSBHHHHCCSSS
T ss_pred             CCCeEEEEEEECCCCceEE---EEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCCCCCCHhHCCcCCC
Confidence            357899999987653 335   9999999999999999999999999999999986 35554567789999999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      ++|||+|+
T Consensus        88 stihlvD~   95 (95)
T 2kjr_A           88 LRLHVVDS   95 (95)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEECC
Confidence            99999994

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=7e-18  Score=129.04  Aligned_cols=84  Identities=24%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             CceEEEEEEeC--CCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCC-CceeeccCCCCcccCCCCCCC
Q psy13905         14 GGTVELYITNS--KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRN-HDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        14 ~~~V~v~ItS~--~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~-g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      .+.|+|.|+++  ......   |++|++++||++||.||+.+||+||..|+|+|++.. +.....|++|.++|++|++++
T Consensus         7 ~~~v~l~I~~~~~~~~~~~---e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~   83 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPERQIL---EKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVEN   83 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCE---EEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCT
T ss_pred             CccEEEEEEecCCCCCcEE---EEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCC
Confidence            45799999964  444345   999999999999999999999999999999999642 223456889999999999999


Q ss_pred             CcEEEEEeCC
Q psy13905         91 EMTLFVEGNY  100 (248)
Q Consensus        91 G~~IhVvD~~  100 (248)
                      |++|||+|++
T Consensus        84 G~~I~V~d~~   93 (97)
T 1wjn_A           84 GDCLLVRWSG   93 (97)
T ss_dssp             TCEEEEECCS
T ss_pred             CCEEEEEecC
Confidence            9999999964

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=8.6e-18  Score=128.22  Aligned_cols=83  Identities=33%  Similarity=0.502  Sum_probs=72.7

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +.|+|.|+++...+..   ++++++++||.+||+||+.++||||++|||+|.+.+|+.+..|++|+++|++|++++|++|
T Consensus         6 ~~v~l~I~~~~~~~~~---~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l   82 (95)
T 1v6e_A            6 SGVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI   82 (95)
T ss_dssp             CCEEEEEEETTSSSCE---EEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred             cEEEEEEEECCCCeeE---EEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence            4699999987664335   9999999999999999999999999999999986556665557789999999999999999


Q ss_pred             EEEeCC
Q psy13905         95 FVEGNY  100 (248)
Q Consensus        95 hVvD~~  100 (248)
                      ||+|++
T Consensus        83 ~v~d~~   88 (95)
T 1v6e_A           83 HVIDHS   88 (95)
T ss_dssp             EEBCCS
T ss_pred             EEEECC
Confidence            999965

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=4e-13  Score=101.10  Aligned_cols=76  Identities=14%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCC-----CCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLN-----NTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV   88 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~-----~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i   88 (248)
                      ...++|+|++....  .   +++++++     +||.+||++|+..+|+||+.|||+|.   |+.   |.+++.+|++|++
T Consensus         5 ~~~~~v~Vk~~~~~--~---~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~---Gk~---L~D~~~~L~~~~i   73 (92)
T 1wxv_A            5 SSGLTVTVTHSNEK--H---DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK---GKS---LKEMETPLSALGI   73 (92)
T ss_dssp             CSSEEEEEECSSSE--E---EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET---TEE---ECCSSSBHHHHTC
T ss_pred             CCeEEEEEEECCEE--E---EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC---Cee---cCCCcccHHHCCC
Confidence            35789999986444  4   7899996     99999999999999999999999986   766   5566789999999


Q ss_pred             CCCcEEEEEeCC
Q psy13905         89 ENEMTLFVEGNY  100 (248)
Q Consensus        89 ~dG~~IhVvD~~  100 (248)
                      .+|++|||+...
T Consensus        74 ~~g~~i~l~~~~   85 (92)
T 1wxv_A           74 QDGCRVMLIGKK   85 (92)
T ss_dssp             CSSEEEEEESCC
T ss_pred             CCCCEEEEEecC
Confidence            999999999864

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.37  E-value=1.4e-12  Score=94.02  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      ++|+|++....  .   +.++++++||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|++++|++|||
T Consensus         5 m~i~vk~~g~~--~---~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~~i~l   72 (77)
T 2bwf_A            5 LNIHIKSGQDK--W---EVNVAPESTVLQFKEAINKANGIPVANQRLIYS---GKI---L-KDDQTVESYHIQDGHSVHL   72 (77)
T ss_dssp             EEEEEEETTEE--E---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC---CeE---c-CCCCCHHHcCCCCCCEEEE
Confidence            78888883332  3   789999999999999999999999999999986   665   4 5679999999999999999


Q ss_pred             EeC
Q psy13905         97 EGN   99 (248)
Q Consensus        97 vD~   99 (248)
                      ++.
T Consensus        73 ~~~   75 (77)
T 2bwf_A           73 VKS   75 (77)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            875

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.35  E-value=1.6e-12  Score=99.44  Aligned_cols=74  Identities=18%  Similarity=0.295  Sum_probs=63.0

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +.+++.|+|....-.. .   ...+.|+.||.+||++|+..+||||++|||++.   |+.    .+|..+|++|+|++|+
T Consensus        18 ~~~mIqI~Vk~~~Gkk-~---~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~---Gk~----LkD~~TL~dY~I~dgs   86 (93)
T 3plu_A           18 GSHMIEVVVNDRLGKK-V---RVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKG---GSV----LKDHISLEDYEVHDQT   86 (93)
T ss_dssp             --CEEEEEEECTTSCE-E---EEEEETTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE----CCTTSBTGGGTCCTTC
T ss_pred             CCceEEEEEECCCCCE-E---EEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeC---CEE----ccCcCCHHHcCCCCCC
Confidence            4568899999754431 3   699999999999999999999999999999985   776    4789999999999999


Q ss_pred             EEEEE
Q psy13905         93 TLFVE   97 (248)
Q Consensus        93 ~IhVv   97 (248)
                      +||+.
T Consensus        87 tLhL~   91 (93)
T 3plu_A           87 NLELY   91 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.34  E-value=2.8e-12  Score=93.30  Aligned_cols=73  Identities=22%  Similarity=0.378  Sum_probs=61.9

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +.+.|+|.+..... .   ...++++.||.+||++|+..+|+||+.|||++.   |+.   | +|+.+|++|++++|++|
T Consensus         3 ~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---G~~---L-~d~~tL~~~~i~~~~~l   71 (79)
T 3phx_B            3 EPLSILVRNNKGRS-S---TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKP---L-EDQLPLGEYGLKPLSTV   71 (79)
T ss_dssp             CCEEEEEECTTSCE-E---EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEE
T ss_pred             CCEEEEEEeCCCCE-E---EEEECCcChHHHHHHHHHhhcCCCHHHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEE
Confidence            45688888754331 3   689999999999999999999999999999986   766   4 67899999999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      |++=
T Consensus        72 ~l~~   75 (79)
T 3phx_B           72 FMNL   75 (79)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9873

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.33  E-value=2e-12  Score=98.39  Aligned_cols=75  Identities=12%  Similarity=0.125  Sum_probs=64.3

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCC-cccCCCCCCCC
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNS-MLLGQYPVENE   91 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~-~~L~~y~i~dG   91 (248)
                      ....+.|+|++....  .   +.++++++||.+||++|+..+|+||++|||++.   |+.   | .|+ .+|++|+|++|
T Consensus        12 ~~~~~~I~Vk~~~~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~~tL~~ygI~~g   79 (94)
T 2kan_A           12 AVRKIHVTVKFPSKQ--F---TVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS---GIE---L-ADDYRNLNEYGITEF   79 (94)
T ss_dssp             SSCCEEEEEECSSCE--E---EEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET---TEE---E-CCTTSBHHHHTCCTT
T ss_pred             CCCCEEEEEEcCCcE--E---EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC---CEE---C-CCCcccHHHCCCCCC
Confidence            345788999975443  4   789999999999999999999999999999986   766   4 456 99999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      ++|||+..
T Consensus        80 stl~lv~r   87 (94)
T 2kan_A           80 SEIVVFLK   87 (94)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEe
Confidence            99999864

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.8e-12  Score=99.92  Aligned_cols=74  Identities=12%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...|+|.|++....  .   +.++++++||.+||++|+..+|+||+.|||++.   |+.   | +|+.+|++|++++|++
T Consensus        26 ~m~i~I~Vk~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~gI~~g~t   93 (101)
T 3m63_B           26 AMSLNIHIKSGQDK--W---EVNVAPESTVLQFKEAINKANGIPVANQRLIYS---GKI---L-KDDQTVESYHIQDGHS   93 (101)
T ss_dssp             ---CCEEEECSSCC--C---CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEET---TEE---C-CTTSBTTTTTCCTTEE
T ss_pred             CcEEEEEEEECCEE--E---EEEeCCCCCHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCcCcHHHCCCCCCCE
Confidence            34578888874444  3   688999999999999999999999999999985   766   4 6789999999999999


Q ss_pred             EEEEeC
Q psy13905         94 LFVEGN   99 (248)
Q Consensus        94 IhVvD~   99 (248)
                      |||+..
T Consensus        94 I~lv~~   99 (101)
T 3m63_B           94 VHLVKS   99 (101)
T ss_dssp             EEECCC
T ss_pred             EEEEeC
Confidence            999875

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.32  E-value=6.9e-12  Score=90.88  Aligned_cols=73  Identities=12%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             eEEEEEEeCCCCcccccceEE-ecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         16 TVELYITNSKDKHESCLNLKK-LKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r-~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      .+.|+|.+.......   ..+ ++++.||.+||++|+..+|+||+.|+|++.   |+.   | +|+++|++|++.+|++|
T Consensus         2 ~m~i~Vk~~~g~~~~---~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~---g~~---L-~d~~tL~~~~i~~g~~i   71 (78)
T 2faz_A            2 SMWIQVRTMDGRQTH---TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR---GKQ---M-EDGHTLFDYEVRLNDTI   71 (78)
T ss_dssp             CEEEEEEETTSSCEE---EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTTTTTCCTTCEE
T ss_pred             cEEEEEEECCCCEEE---EEeccCCCCCHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCCCCHHHcCCCCCCEE
Confidence            467888865433112   577 999999999999999999999999999985   765   4 67899999999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      |++-
T Consensus        72 ~l~~   75 (78)
T 2faz_A           72 QLLV   75 (78)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9873

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.32  E-value=9e-13  Score=100.39  Aligned_cols=74  Identities=26%  Similarity=0.250  Sum_probs=63.5

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...++|+|++....  .   +++++++.||.+||++|+..+||||++|||++.   |+.   | +|. +|++|+|++|++
T Consensus        15 ~~~~~i~Vk~~g~~--~---~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~---Gk~---L-dd~-tL~~~~i~~g~~   81 (95)
T 1v86_A           15 KELVDLKIIWNKTK--H---DVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK---GLV---P-EDK-TLREIKVTSGAK   81 (95)
T ss_dssp             CCCEEEEEEETTEE--E---EEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS---SBC---C-SSS-BHHHHCCCTTEE
T ss_pred             CceEEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---Cee---C-CcC-cHHHCCCCCCCE
Confidence            45789999876543  4   799999999999999999999999999999975   665   5 444 999999999999


Q ss_pred             EEEEeCC
Q psy13905         94 LFVEGNY  100 (248)
Q Consensus        94 IhVvD~~  100 (248)
                      |||+++.
T Consensus        82 i~lv~~~   88 (95)
T 1v86_A           82 IMVVGST   88 (95)
T ss_dssp             EEECCSS
T ss_pred             EEEEecc
Confidence            9999864

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.31  E-value=5.7e-12  Score=93.61  Aligned_cols=74  Identities=11%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      ...+.+.|+|.+..... .   +.+++++.||.+||++|+..+|+||+.|||++.   |+.   | .|+.+|++|++ +|
T Consensus        13 ~~~~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i-~g   80 (88)
T 4eew_A           13 EEPDSLEVLVKTLDSQT-R---TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ---GRV---L-QDDKKLQEYNV-GG   80 (88)
T ss_dssp             --CCEEEEEEEETTSCE-E---EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTC-TT
T ss_pred             cCCCeEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEE---C-CCCCcHHHcCC-CC
Confidence            44567889998754331 3   689999999999999999999999999999985   766   4 67899999999 89


Q ss_pred             cEEEEE
Q psy13905         92 MTLFVE   97 (248)
Q Consensus        92 ~~IhVv   97 (248)
                      ++||++
T Consensus        81 ~~i~lv   86 (88)
T 4eew_A           81 KVIHLV   86 (88)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999987

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.31  E-value=2.7e-12  Score=95.69  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=62.2

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +..+|+|....... .   +.++++++||++||++|+..+|+||++|||++.   |+.   +.+|+++|++|++++|++|
T Consensus         9 ~~~~i~vk~l~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---lL~D~~tL~~y~I~~gs~i   78 (84)
T 2kk8_A            9 SHMKFLVENLNGSS-F---ELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD---GIV---ILREDLTVEQCQIVPTSDI   78 (84)
T ss_dssp             CCEEEEEEETTSCE-E---EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE---CCCSSSBHHHHTCCTTSCE
T ss_pred             CceEEEEEecCCcE-E---EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CEE---ecCCcCCHHHcCCCCCCEE
Confidence            45688888644331 3   789999999999999999999999999999986   654   2478899999999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      ||+-
T Consensus        79 ~lv~   82 (84)
T 2kk8_A           79 QLEV   82 (84)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9873

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=5.3e-12  Score=91.73  Aligned_cols=75  Identities=13%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +.+.++|+|++.... ..   +.+++++.||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|++.+|+
T Consensus         4 ~~~~m~i~vk~~~g~-~~---~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~   72 (81)
T 2dzi_A            4 GSSGMQLTVKALQGR-EC---SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFK---GKA---L-ADGKRLSDYSIGPNS   72 (81)
T ss_dssp             SSSSEEEEEEETTSC-EE---EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEET---TEE---C-CTTSBGGGGTCCSSB
T ss_pred             CCCcEEEEEEeCCCC-EE---EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC---CeE---C-CCCCcHHHcCCCCCC
Confidence            345788999864333 13   789999999999999999999999999999985   766   4 578999999999999


Q ss_pred             EEEEEe
Q psy13905         93 TLFVEG   98 (248)
Q Consensus        93 ~IhVvD   98 (248)
                      +|||+-
T Consensus        73 ~i~l~~   78 (81)
T 2dzi_A           73 KLNLVV   78 (81)
T ss_dssp             CCEEEC
T ss_pred             EEEEEE
Confidence            999873

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.30  E-value=8.4e-12  Score=93.06  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +-+.+.+.++.....  .   +.+++++.||.+||++|+..+|+||+.|||++.   |+.   | +|+.+|++|++.+|+
T Consensus         9 ~~~~~~~~~~~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~   76 (85)
T 2kd0_A            9 SHSTIKLTVKFGGKS--I---PLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK---GKV---L-VETSTLKQSDVGSGA   76 (85)
T ss_dssp             SCCCEEEEEEETTEE--E---EEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET---TEE---C-CTTCBTTTTTCCTTE
T ss_pred             cCCcEEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---CeE---C-CCcCCHHHCCCCCCC
Confidence            345667777766554  3   789999999999999999999999999999975   665   4 678999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|+|+.+
T Consensus        77 ~l~l~~s   83 (85)
T 2kd0_A           77 KLMLMAS   83 (85)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEe
Confidence            9999864

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.29  E-value=9.2e-12  Score=91.52  Aligned_cols=74  Identities=12%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH---HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL---TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~---tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      ..+.|+|.+..... .   +.++++++||.+||++|+..   +|+|+++|||+|.   |+.   | +|+.+|++|++.+|
T Consensus         4 ~~m~i~vk~~~g~~-~---~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i~~g   72 (85)
T 2wyq_A            4 MAVTITLKTLQQQT-F---KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA---GKI---L-SDDVPIRDYRIDEK   72 (85)
T ss_dssp             CCEEEEEEETTSCE-E---EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET---TEE---C-CTTSBGGGGCCCTT
T ss_pred             ceEEEEEEECCCCE-E---EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC---CEE---C-cCCCCHHHcCCCCC
Confidence            45788898753331 3   78999999999999999998   9999999999986   765   4 67899999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      ++|||+..
T Consensus        73 ~~i~l~~~   80 (85)
T 2wyq_A           73 NFVVVMVT   80 (85)
T ss_dssp             SEEEEEEC
T ss_pred             CEEEEEEc
Confidence            99999875

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.28  E-value=1e-11  Score=93.11  Aligned_cols=74  Identities=18%  Similarity=0.310  Sum_probs=62.4

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...++|+|.+..... .   ..++++++||.+||++|+..+|+|++.|||++.   |+.   | +|+.+|++|++++|++
T Consensus        15 ~~~m~i~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~~   83 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTH-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST   83 (91)
T ss_dssp             CCSEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTCBTGGGTCCTTCE
T ss_pred             CCeEEEEEEeCCCCE-E---EEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC---CeE---C-CCcCcHHHCCCCCCCE
Confidence            346788888643331 3   689999999999999999999999999999986   766   4 6789999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |||+-
T Consensus        84 i~l~~   88 (91)
T 3v6c_B           84 LHLVL   88 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99973

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.28  E-value=4.1e-12  Score=97.74  Aligned_cols=77  Identities=13%  Similarity=0.175  Sum_probs=62.9

Q ss_pred             ceEEEEEEeCCC---CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         15 GTVELYITNSKD---KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        15 ~~V~v~ItS~~~---s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      +.+.|+|+....   ....   ..++++++||.+||++|+..+|+||++|+|++.   |+.   |.++.++|++|+|++|
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~---~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---gk~---L~D~~~tL~~ygI~~g   76 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTF---SLQVNPDFELSNFRVLCELESGVPAEEAQIVYM---EQL---LTDDHCSLGSYGLKDG   76 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEE---EEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET---TEE---ECCSSSBHHHHTCCTT
T ss_pred             CeEEEEEEECCCCcCceEE---EEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC---CEE---CCCCcccHHHCCCCCC
Confidence            457788876321   1223   688999999999999999999999999999986   665   5556689999999999


Q ss_pred             cEEEEEeCC
Q psy13905         92 MTLFVEGNY  100 (248)
Q Consensus        92 ~~IhVvD~~  100 (248)
                      ++|||+...
T Consensus        77 ~~l~l~~~~   85 (102)
T 1v5o_A           77 DMVVLLQKD   85 (102)
T ss_dssp             EEEEECBCC
T ss_pred             CEEEEEECC
Confidence            999999864

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.28  E-value=9.7e-12  Score=95.66  Aligned_cols=75  Identities=11%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +...+.|+|++....  .   +.++++++||.+||++|+..+|+||+.|+|+|.   |+.   | +|+.+|++|++.+|+
T Consensus        22 ~~~~m~I~Vk~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~gI~~g~   89 (101)
T 2klc_A           22 HPKIMKVTVKTPKEK--E---EFAVPENSSVQQFKEEISKRFKSHTDQLVLIFA---GKI---L-KDQDTLSQHGIHDGL   89 (101)
T ss_dssp             -CCCEEEEEECSSCE--E---EEEECSCCCHHHHHHHHHHHHTCCGGGEEEEET---TEE---E-CTTCCTGGGTCCTTC
T ss_pred             CCCeEEEEEEeCCcE--E---EEEECCCCCHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCcCcHHHcCCCCCC
Confidence            456789999986332  3   789999999999999999999999999999985   765   4 578999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|||+..
T Consensus        90 ~I~l~~~   96 (101)
T 2klc_A           90 TVHLVIK   96 (101)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9999874

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.28  E-value=8.1e-12  Score=92.25  Aligned_cols=74  Identities=11%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ..+.+.|+|.+..... .   ..++++++||.+||++|+..+|+||+.|+|+|.   |+.   | +|+.+|.+|++++|+
T Consensus         9 ~~~~m~i~vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---G~~---L-~d~~tL~~~~i~~~~   77 (88)
T 3dbh_I            9 SGGSMLIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDEKTAADYKILGGS   77 (88)
T ss_dssp             CCCCEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEE---C-CTTSBGGGGTCCTTC
T ss_pred             CCCcEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcCHHHEEEEEC---CeE---C-CCCCcHHHcCCCCCC
Confidence            4457889998754331 3   789999999999999999999999999999985   765   4 678999999999999


Q ss_pred             EEEEE
Q psy13905         93 TLFVE   97 (248)
Q Consensus        93 ~IhVv   97 (248)
                      +|||+
T Consensus        78 ~i~l~   82 (88)
T 3dbh_I           78 VLHLV   82 (88)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99986

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.27  E-value=7.4e-12  Score=92.54  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=63.1

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      .+.++|+|.+..... .   +.+++++.||.+||++|+..+|+||+.|+|+|.   |+.   | +|+.+|++|++.+|++
T Consensus         5 ~~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~---Gk~---L-~d~~tL~~~~i~~g~~   73 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGS-Y---AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ---GQV---L-QDWLGLGIYGIQDSDT   73 (87)
T ss_dssp             SSSEEEEEEETTTEE-E---EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET---TEE---C-CSSSBHHHHTCCTTEE
T ss_pred             CCCEEEEEEcCCCCE-E---EEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC---CEE---c-cCCCCHHHCCCCCCCE
Confidence            357889998754331 3   789999999999999999999999999999985   665   4 6789999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |||+-
T Consensus        74 i~l~~   78 (87)
T 1wh3_A           74 LILSK   78 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.27  E-value=1.2e-11  Score=90.38  Aligned_cols=73  Identities=16%  Similarity=0.258  Sum_probs=61.8

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +.++|+|.+..... .   ..+++++.||.+||++|+..+|+||+.|+|++.   |+.   | .|+.+|++|++++|++|
T Consensus         2 s~m~i~vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~---g~~---L-~d~~tL~~~~i~~~~~l   70 (85)
T 3mtn_B            2 SHMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKWSTL   70 (85)
T ss_dssp             -CEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBTGGGTCCTTCEE
T ss_pred             CeEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCCCCHHHcCCCCCCEE
Confidence            45788998754331 3   789999999999999999999999999999985   665   4 57899999999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      ||+-
T Consensus        71 ~l~~   74 (85)
T 3mtn_B           71 FLLL   74 (85)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9974

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.26  E-value=6.6e-12  Score=93.84  Aligned_cols=73  Identities=22%  Similarity=0.383  Sum_probs=62.6

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .+.|+|.+..... .   ..+++++.||.+||++|+..+|+||+.|||+|.   |+.   | +|+.+|++|++++|++||
T Consensus         4 ~m~I~Vk~~~g~~-~---~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~~I~~g~~i~   72 (88)
T 2hj8_A            4 PLSILVRNNKGRS-S---TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKP---L-EDQLPLGEYGLKPLSTVF   72 (88)
T ss_dssp             EEEEEEEETTSCE-E---EEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS---SSC---C-CTTSBHHHHHCSTTCEEE
T ss_pred             cEEEEEECCCCCE-E---EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEE
Confidence            5788888753331 3   689999999999999999999999999999985   665   4 678999999999999999


Q ss_pred             EEeC
Q psy13905         96 VEGN   99 (248)
Q Consensus        96 VvD~   99 (248)
                      |+..
T Consensus        73 l~~~   76 (88)
T 2hj8_A           73 MNLR   76 (88)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            9874

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.26  E-value=9.9e-12  Score=91.06  Aligned_cols=73  Identities=14%  Similarity=0.246  Sum_probs=60.4

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +.+.|+|.+..... .   ..++++++||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|++++|++|
T Consensus         2 s~m~i~vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~---g~~---L-~d~~tL~~~~i~~~~~i   70 (85)
T 3n3k_B            2 SHMRIVVKTLMGRT-I---ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIHNHSAL   70 (85)
T ss_dssp             --CEEEEECGGGCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---BEE---C-CTTCBTTTTTCCTTCEE
T ss_pred             CeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC---CeE---C-CCCCCHHHCCCCCCCEE
Confidence            45678888643221 3   789999999999999999999999999999985   665   4 67889999999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      ||+-
T Consensus        71 ~l~~   74 (85)
T 3n3k_B           71 YLLL   74 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.25  E-value=1.5e-11  Score=95.82  Aligned_cols=76  Identities=16%  Similarity=0.166  Sum_probs=63.6

Q ss_pred             CCceEEEEEEeCC--CCcccccceEEecC-CCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905         13 GGGTVELYITNSK--DKHESCLNLKKLKL-NNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        13 ~~~~V~v~ItS~~--~s~~s~~~E~r~~~-~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      ..+.+.|+|.+..  .....   +.++++ ++||.+||++|+..+|+||+.|+|++.   |+.    .+|+.+|++|+|.
T Consensus        24 ~~~~i~i~Vk~~~~~~g~~~---~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~---Gk~----L~D~~tL~~y~I~   93 (111)
T 1we6_A           24 HPGPATIRVSKPNENDGQFM---EITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK---AGF----LKDNMSLAHYNVG   93 (111)
T ss_dssp             CCSCEEEEECCTTCSSSCCE---EEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS---SSB----CCTTSBTTTTTCS
T ss_pred             CCCcEEEEEEecccCCCcEE---EEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC---CEE----CCCCCcHHHCCCC
Confidence            3467899999752  22223   789998 999999999999999999999999985   665    4678999999999


Q ss_pred             CCcEEEEEe
Q psy13905         90 NEMTLFVEG   98 (248)
Q Consensus        90 dG~~IhVvD   98 (248)
                      +|++|||+=
T Consensus        94 ~g~~l~l~~  102 (111)
T 1we6_A           94 AGEILTLSL  102 (111)
T ss_dssp             SSCEEEEEC
T ss_pred             CCCEEEEEE
Confidence            999999973

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.25  E-value=1.6e-11  Score=91.79  Aligned_cols=70  Identities=9%  Similarity=0.117  Sum_probs=59.5

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+..... .   ..++++++||.+||++|+..+|+||+.|||++.   |+.   | +|+.+|++|++++|++||++
T Consensus         2 ~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i~~g~~l~l~   70 (88)
T 4fbj_B            2 LIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDEKTAADYKILGGSVLHLV   70 (88)
T ss_dssp             EEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBTTTTTCCTTCEEEEE
T ss_pred             EEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC---CeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            56777543331 3   689999999999999999999999999999986   766   4 67899999999999999998


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        71 ~   71 (88)
T 4fbj_B           71 L   71 (88)
T ss_dssp             C
T ss_pred             E
Confidence            4

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.25  E-value=1.6e-11  Score=87.65  Aligned_cols=70  Identities=9%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      +|+|.+..... .   +.+++++.||.+||++|+..+|+||+.|+|.+.   |+.   | +|+.+|++|++++|++||++
T Consensus         2 ~i~vk~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~---g~~---L-~d~~tL~~~~i~~g~~i~l~   70 (76)
T 1ndd_A            2 LIKVKTLTGKE-I---EIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS---GKQ---M-NDEKTAADYKILGGSVLHLV   70 (76)
T ss_dssp             EEEEECTTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEECCCCCE-E---EEEECCCChHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            57777643321 3   689999999999999999999999999999986   765   4 67899999999999999997


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        71 ~   71 (76)
T 1ndd_A           71 L   71 (76)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.24  E-value=5.4e-12  Score=95.42  Aligned_cols=75  Identities=12%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ....++|+|++....  .   +.++++++||.+||++|+..+|+|++.|||+|.   |+.   | +|+.+|.+|++++|+
T Consensus        14 ~~~~m~i~Vk~~g~~--~---~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~   81 (96)
T 1wx8_A           14 SSRIIRVSVKTPQDC--H---EFFLAENSNVRRFKKQISKYLHCNADRLVLIFT---GKI---L-RDQDILSQRGILDGS   81 (96)
T ss_dssp             CSCEEEEEEECSSSE--E---EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET---TEE---C-CTTSCHHHHTCCTTE
T ss_pred             CCCcEEEEEEECCeE--E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEE---C-CCcCCHHHCCCCCCC
Confidence            345789999987332  3   789999999999999999999999999999986   765   4 678999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|||+..
T Consensus        82 ~i~l~~~   88 (96)
T 1wx8_A           82 TVHVVVR   88 (96)
T ss_dssp             EEECCBC
T ss_pred             EEEEEEe
Confidence            9999864

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.24  E-value=2.6e-11  Score=90.35  Aligned_cols=74  Identities=11%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...+.|+|.+..... .   ..++++++||.+||++|+..+|+|++.|||+|.   |+.   | +|+.+|++|++ +|++
T Consensus         3 ~~~m~i~Vk~~~g~~-~---~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~---Gk~---L-~d~~tL~~~~i-~g~~   70 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQT-R---TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ---GRV---L-QDDKKLQEYNV-GGKV   70 (90)
T ss_dssp             CCEEEEEEEETTCCE-E---EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTC-TTEE
T ss_pred             CcEEEEEEEcCCCCE-E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CeE---C-CCCCCHHHcCC-CCcE
Confidence            356789998754331 3   688999999999999999999999999999985   776   4 67899999999 8999


Q ss_pred             EEEEeC
Q psy13905         94 LFVEGN   99 (248)
Q Consensus        94 IhVvD~   99 (248)
                      ||++..
T Consensus        71 i~l~~~   76 (90)
T 4dwf_A           71 IHLVER   76 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999974

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.23  E-value=1.9e-11  Score=90.75  Aligned_cols=74  Identities=15%  Similarity=0.085  Sum_probs=62.4

Q ss_pred             CceEEEEEEeCCC-CcccccceE-EecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         14 GGTVELYITNSKD-KHESCLNLK-KLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        14 ~~~V~v~ItS~~~-s~~s~~~E~-r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      ...+.|+|.+... .. .   .. .++++.||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|++.+|
T Consensus         5 ~~~m~i~Vk~~~g~~~-~---~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g   73 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKT-C---TIEDVSRKATIEELRERVWALFDVRPECQRLFYR---GKQ---L-ENGYTLFDYDVGLN   73 (89)
T ss_dssp             SSCEEEEEEETTCSCE-E---EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET---TEE---C-CSSSBHHHHTCCTT
T ss_pred             CCcEEEEEEECCCCce-E---EEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC---CeE---C-CCCCCHHHCCCCCC
Confidence            4568899987533 21 3   67 5999999999999999999999999999985   665   4 67899999999999


Q ss_pred             cEEEEEe
Q psy13905         92 MTLFVEG   98 (248)
Q Consensus        92 ~~IhVvD   98 (248)
                      ++||++-
T Consensus        74 ~~i~l~~   80 (89)
T 1wy8_A           74 DIIQLLV   80 (89)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9999974

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.23  E-value=1.9e-11  Score=93.21  Aligned_cols=74  Identities=18%  Similarity=0.294  Sum_probs=61.9

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      +..++|+|.+..... .   ..++++++||.+||++|+..+|+||+.|||+|.   |+.   | +|+.+|++|+|++|++
T Consensus        20 ~~~m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~i~~g~~   88 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKT-I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST   88 (98)
T ss_dssp             --CCEEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTCBSGGGTCCTTEE
T ss_pred             CCeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC---CEE---C-CCCCcHHHCCCCCCCE
Confidence            346788998654331 3   689999999999999999999999999999986   766   4 6889999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |||+-
T Consensus        89 i~l~~   93 (98)
T 4hcn_B           89 LHLVL   93 (98)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99973

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.23  E-value=2.4e-11  Score=86.76  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=59.2

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+..... .   +.+++++.||++||++|+..+|+||+.|+|.+.   |+.   | +|+.+|++|++.+|++||++
T Consensus         2 ~i~vk~~~g~~-~---~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~---g~~---L-~d~~tL~~~~i~~g~~i~l~   70 (76)
T 3a9j_A            2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQRESTLHLV   70 (76)
T ss_dssp             EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTGGGTCCTTCEEEEE
T ss_pred             EEEEEcCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CeE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            57777643331 3   689999999999999999999999999999985   665   4 57899999999999999987


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        71 ~   71 (76)
T 3a9j_A           71 L   71 (76)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.23  E-value=3.1e-11  Score=96.55  Aligned_cols=75  Identities=11%  Similarity=0.148  Sum_probs=64.6

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      .+.++|+|++....  .   ++++++++||.+||++|+..+|+|++.|||+|.   |+.   | +|+.+|++|+|++|++
T Consensus        30 ~~~m~I~Vk~~g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dygI~~gst   97 (125)
T 1j8c_A           30 PKIIKVTVKTPKEK--E---EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA---GKI---L-KDQDTLIQHGIHDGLT   97 (125)
T ss_dssp             CCCEEEEEECSSCE--E---EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET---TEE---E-STTSCGGGTTCSSSEE
T ss_pred             CCcEEEEEEeCCeE--E---EEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC---CEE---c-CCCCCHHHcCCCCCCE
Confidence            35789999986322  3   789999999999999999999999999999986   766   4 5789999999999999


Q ss_pred             EEEEeCC
Q psy13905         94 LFVEGNY  100 (248)
Q Consensus        94 IhVvD~~  100 (248)
                      |||+...
T Consensus        98 I~lv~~~  104 (125)
T 1j8c_A           98 VHLVIKR  104 (125)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999854

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.23  E-value=1.9e-11  Score=94.38  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=64.7

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ....++|+|++....  .   +.++++++||.+||++|+..+|+|++.|||+|.   |+.   | +|+.+|.+|+|++|+
T Consensus        14 ~~~~m~I~Vk~~~g~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~gi~~g~   81 (106)
T 1wx7_A           14 DPHLIKVTVKTPKDK--E---DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA---GKI---L-KDPDSLAQCGVRDGL   81 (106)
T ss_dssp             CSSEEEEEEECSSCE--E---EEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET---TEE---C-CTTSCHHHHTCCTTE
T ss_pred             CCceEEEEEEeCCCc--E---EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCcCcHHHcCCCCCC
Confidence            345789999875443  3   689999999999999999999999999999985   665   4 678999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|||+..
T Consensus        82 ~i~l~~~   88 (106)
T 1wx7_A           82 TVHLVIK   88 (106)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9999974

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.23  E-value=1.4e-11  Score=94.71  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      .+..++|+|++....  .   +.++++++||.+||++|+..+|+||+.|||+|.   |+.   | +|+.+|++|++++|+
T Consensus        19 ~~~~m~I~Vk~~~g~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~ygI~~gs   86 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK--E---DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA---GKI---L-KDPDSLAQCGVRDGL   86 (100)
T ss_dssp             CTTEEEEEEECSSCE--E---EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBHHHHTCCTTC
T ss_pred             CCCeEEEEEEcCCCc--E---EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCcCcHHHCCCCCCC
Confidence            456789999976544  3   689999999999999999999999999999986   765   4 678999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|||+..
T Consensus        87 tI~l~~r   93 (100)
T 1yqb_A           87 TVHLVIK   93 (100)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9999864

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.22  E-value=7.3e-12  Score=97.39  Aligned_cols=81  Identities=10%  Similarity=0.079  Sum_probs=63.3

Q ss_pred             ceEEEEEEeCCCCcccccceEEec-CCCCHHHHHHHHHHHHCCCCCCeEEEEEeCC--Cc------eeeccCCCCcccCC
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLK-LNNTIGELKQKLELLTGQMSSNMTISLYNRN--HD------LVSHLSDNSMLLGQ   85 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~-~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~--g~------~i~~L~~d~~~L~~   85 (248)
                      +.+.|+|.+..-.  .   ...++ +++||.+||+||+.++||||++|+|++....  ++      .+..+.+|+++|++
T Consensus         6 ~~M~irvrs~~G~--~---~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~   80 (107)
T 1wf9_A            6 SGTMLRVRSRDGL--E---RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISS   80 (107)
T ss_dssp             CCEEEEEECSSCE--E---EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGG
T ss_pred             CeEEEEEECCCCC--E---EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHH
Confidence            3467888875443  2   46788 9999999999999999999999999987320  00      22223688999999


Q ss_pred             CCCCCCcEEEEEeCC
Q psy13905         86 YPVENEMTLFVEGNY  100 (248)
Q Consensus        86 y~i~dG~~IhVvD~~  100 (248)
                      |+|++|++|||++..
T Consensus        81 ~gi~~G~~L~l~~~~   95 (107)
T 1wf9_A           81 LNLAHGSMVYLAYEG   95 (107)
T ss_dssp             TCCCTTCEEECCCSS
T ss_pred             CCCCCCCEEEEEeCC
Confidence            999999999999853

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.22  E-value=1.3e-11  Score=96.93  Aligned_cols=75  Identities=15%  Similarity=0.184  Sum_probs=63.5

Q ss_pred             CceEEEEEEeCCC---------CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccC
Q psy13905         14 GGTVELYITNSKD---------KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLG   84 (248)
Q Consensus        14 ~~~V~v~ItS~~~---------s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~   84 (248)
                      .+.|+|.|+++..         ...   ++.++++++||.+||++|+..+|+||+.|+|+|.   |+.   | .|+.+|+
T Consensus        23 ~~~i~l~V~~p~~~~~~~~~L~G~~---~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~---Gk~---L-~D~~tL~   92 (115)
T 1we7_A           23 KGPVSIKVQVPNMQDKTEWKLNGQG---LVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE---GIF---I-KDSNSLA   92 (115)
T ss_dssp             CSCEEEEEEECCCSSSCSSCCSSEE---EEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEET---TEE---E-CTTSBHH
T ss_pred             CCCEEEEEEcCCCccccccccCCeE---EEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEC---CEE---C-CCCCCHH
Confidence            4678999997542         111   3789999999999999999999999999999985   765   4 5789999


Q ss_pred             CCCCCCCcEEEEEe
Q psy13905         85 QYPVENEMTLFVEG   98 (248)
Q Consensus        85 ~y~i~dG~~IhVvD   98 (248)
                      +|++.+|++|||+-
T Consensus        93 ~y~i~~g~~i~lv~  106 (115)
T 1we7_A           93 YYNMASGAVIHLAL  106 (115)
T ss_dssp             HHTCCSSCEEEEEE
T ss_pred             HCCCCCCCEEEEEE
Confidence            99999999999974

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.22  E-value=2e-11  Score=94.60  Aligned_cols=73  Identities=21%  Similarity=0.357  Sum_probs=62.9

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ..++.|+|.+..... .   ...++++.||.+||++|+..+|+||++|||++.   |+.   | +|+.+|++|+|++|++
T Consensus        26 ~~mm~I~VKtl~Gk~-i---~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~---Gk~---L-~D~~TL~dygI~~gst   94 (100)
T 1uh6_A           26 ATMIEVVCNDRLGKK-V---RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW---YTI---F-KDHVSLGDYEIHDGMN   94 (100)
T ss_dssp             CCEEEEEEECSSSSC-E---EEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CSSCBHHHHTCCTTEE
T ss_pred             CCeEEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC---CEE---C-CCCCCHHHcCCCCCCE
Confidence            346899999654331 3   689999999999999999999999999999986   776   4 7899999999999999


Q ss_pred             EEEE
Q psy13905         94 LFVE   97 (248)
Q Consensus        94 IhVv   97 (248)
                      ||++
T Consensus        95 lhL~   98 (100)
T 1uh6_A           95 LELY   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.21  E-value=3.4e-11  Score=94.11  Aligned_cols=73  Identities=16%  Similarity=0.248  Sum_probs=61.8

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      ..++|+|.+..... .   ..++++++||.+||++|+..+|+||+.|||+|.   |+.   | .|+.+|++|++++|++|
T Consensus        34 ~~m~I~Vk~~~G~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~gI~~gs~I  102 (111)
T 3vdz_A           34 LAMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTL  102 (111)
T ss_dssp             GCEEEEEECSSSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTTTTTCCTTCEE
T ss_pred             ccEEEEEEeCCCCE-E---EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEE
Confidence            36788888643321 3   689999999999999999999999999999986   765   4 67889999999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      |++-
T Consensus       103 ~l~~  106 (111)
T 3vdz_A          103 HLVL  106 (111)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.21  E-value=1.9e-11  Score=94.65  Aligned_cols=78  Identities=17%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             CCceEEEEEEeCC-C--CcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905         13 GGGTVELYITNSK-D--KHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        13 ~~~~V~v~ItS~~-~--s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      ..++.+|.|..+. .  ....   +..+++++||.+||++|+..+|+||++|||+|.   |+.   | +|+.+|.+|+|+
T Consensus        12 ~tg~ati~V~~~~~~~~~~~~---~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~---GKi---L-~D~~TL~~y~I~   81 (100)
T 1wju_A           12 TTGIATIEVFLPPRLKKDRKN---LLETRLHITGRELRSKIAETFGLQENYIKIVIN---KKQ---L-QLGKTLEEQGVA   81 (100)
T ss_dssp             CCCEEEEEEECCTTTCCSSSE---EEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET---TEE---C-CTTSBHHHHTCC
T ss_pred             hcceEEEEEEecCCCCCCcEE---EEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC---CeE---C-CCCCcHHHcCCC
Confidence            3456666776433 1  2223   899999999999999999999999999999986   887   4 788999999999


Q ss_pred             CCcEEEEEeCC
Q psy13905         90 NEMTLFVEGNY  100 (248)
Q Consensus        90 dG~~IhVvD~~  100 (248)
                      +|++|||+-..
T Consensus        82 ~gsti~vl~lr   92 (100)
T 1wju_A           82 HNVKAMVLELK   92 (100)
T ss_dssp             SSEEEEEECCC
T ss_pred             CCCEEEEEEEC
Confidence            99999998654

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.20  E-value=2.2e-11  Score=93.75  Aligned_cols=77  Identities=18%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             CCCceEEEEEEeCCCC-cccccceEEecCCCCHHHHHHHH-HHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC-
Q psy13905         12 DGGGTVELYITNSKDK-HESCLNLKKLKLNNTIGELKQKL-ELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV-   88 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KL-e~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i-   88 (248)
                      +..+.+.|+|.+.... +..   +..++++.||.+||++| +..+|+||++|||+|.   |+.   | .|+.+|++|+| 
T Consensus        15 ~~~~~m~I~VKtl~g~~~~i---~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dy~I~   84 (98)
T 4a20_A           15 MDNAAVHLTLKKIQAPKFSI---EHDFSPSDTILQIKQHLISEEKASHISEIKLLLK---GKV---L-HDNLFLSDLKVT   84 (98)
T ss_dssp             ---CCEEEEEEECSSSCEEE---EEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEET---TEE---E-CTTCBGGGSCCB
T ss_pred             CCCCCEEEEEEcCCCCEEEE---EEecCCCChHHHHHHHHHHHhcCCChhhEEEEEC---CEE---C-cCcCCHHHcCcC
Confidence            4567889999975443 222   55778999999999999 9999999999999996   776   4 68899999999 


Q ss_pred             CCCcEEEEEe
Q psy13905         89 ENEMTLFVEG   98 (248)
Q Consensus        89 ~dG~~IhVvD   98 (248)
                      ++|.+||++-
T Consensus        85 ~~g~ti~lmv   94 (98)
T 4a20_A           85 PANSTITVMI   94 (98)
T ss_dssp             TTBCEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999999874

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.20  E-value=4.7e-11  Score=90.44  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH---HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL---TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~---tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +|+|.+..... .   +.++++++||.+||++|+..   +|+||+.|||+|.   |+.   | +|+.+|++|++.+|++|
T Consensus         2 ~I~Vk~~~g~~-~---~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~ygI~~g~~i   70 (95)
T 1uel_A            2 QVTLKTLQQQT-F---KIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA---GKI---L-NDDTALKEYKIDEKNFV   70 (95)
T ss_dssp             EEEEEETTCCE-E---EEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET---TEE---C-CTTSBGGGGTCCSSSEE
T ss_pred             EEEEEeCCCCE-E---EEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEEC---CEE---C-CCcCcHHHCCCCCCCEE
Confidence            57777643321 3   78999999999999999999   8999999999986   766   4 67899999999999999


Q ss_pred             EEEeCC
Q psy13905         95 FVEGNY  100 (248)
Q Consensus        95 hVvD~~  100 (248)
                      ||+...
T Consensus        71 ~l~~~~   76 (95)
T 1uel_A           71 VVMVTK   76 (95)
T ss_dssp             EEEESS
T ss_pred             EEEEeC
Confidence            999864

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.20  E-value=6.6e-11  Score=92.26  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=63.1

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      .+.++|+|++..... .   +.+++++.||.+||++|+..+|+||+.|+|++.   |+.   | .|+.+|++|++.+|++
T Consensus        33 ~~~m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~gI~~gs~  101 (111)
T 2ojr_A           33 LLAMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST  101 (111)
T ss_dssp             SSCEEEEEECSSSCE-E---EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEET---TEE---C-CSSCBTTTTTCCTTCE
T ss_pred             CCeEEEEEEcCCCCE-E---EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEEC---CEE---C-CCCCcHHHcCCCCCCE
Confidence            457899999753331 3   688999999999999999999999999999985   665   4 6789999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |||+-
T Consensus       102 I~l~~  106 (111)
T 2ojr_A          102 LHLVL  106 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=93.09  Aligned_cols=70  Identities=23%  Similarity=0.338  Sum_probs=60.3

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .+.|+|.+ ...  .   ..+++++.||.+||++|+..+|+||+.|+|+|.   |+.   | +|+.+|++|++++|++||
T Consensus        19 ~m~I~Vk~-g~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~y~I~~gstI~   85 (93)
T 2l7r_A           19 SMQLFVRA-QEL--H---TFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA---GAP---L-EDEATLGQCGVEALTTLE   85 (93)
T ss_dssp             -CEEEEES-SSE--E---EEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET---TEE---C-CTTSBHHHHTCCSSCEEE
T ss_pred             cEEEEEEC-CCE--E---EEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEEE
Confidence            46788888 332  3   789999999999999999999999999999986   765   4 688999999999999999


Q ss_pred             EEe
Q psy13905         96 VEG   98 (248)
Q Consensus        96 VvD   98 (248)
                      |+-
T Consensus        86 lv~   88 (93)
T 2l7r_A           86 VAG   88 (93)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            973

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.19  E-value=3.3e-11  Score=90.76  Aligned_cols=76  Identities=17%  Similarity=0.167  Sum_probs=62.4

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHH--CCCCCCeEEEEEeCCCceeeccCCCCcccCCC--CCCC
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLT--GQMSSNMTISLYNRNHDLVSHLSDNSMLLGQY--PVEN   90 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~t--Gipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y--~i~d   90 (248)
                      +.+.|+|.+.......  ++..+++++||.+||++|+..+  |+||++|||+|.   |+.   | .|+.+|++|  ++++
T Consensus         6 ~~m~i~Vk~~~~~~~~--~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~---Gk~---L-~D~~tL~~~~~~i~~   76 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRD--LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS---GKL---L-LDHQCLRDLLPKQEK   76 (93)
T ss_dssp             CCCEEEEECSSSSCCC--EEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET---TEE---C-CSSSCHHHHSCSSSC
T ss_pred             cEEEEEEEeCCCCeEE--EEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC---CEE---C-cCcCCHHHHhcCCCC
Confidence            4688999975443111  2566779999999999999999  999999999986   776   4 577899999  9999


Q ss_pred             CcEEEEEeC
Q psy13905         91 EMTLFVEGN   99 (248)
Q Consensus        91 G~~IhVvD~   99 (248)
                      |++||++-.
T Consensus        77 ~~~i~lv~~   85 (93)
T 1wgd_A           77 RHVLHLVCN   85 (93)
T ss_dssp             SEEEEEECC
T ss_pred             CCEEEEEeC
Confidence            999999853

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.18  E-value=4.8e-11  Score=89.78  Aligned_cols=72  Identities=17%  Similarity=0.271  Sum_probs=60.6

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +.|+|.+..... .   +.++++++||.+||++|+..+|+|++.|+|+|.   |+.   | +|+.+|++|++.+|++|||
T Consensus         2 m~i~vk~~~g~~-~---~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~---G~~---L-~d~~tL~~~~i~~~~~i~l   70 (96)
T 3k9o_B            2 MQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL   70 (96)
T ss_dssp             CEEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred             cEEEEEeCCCCE-E---EEEECCCCCHHHHHHHHHhhhCCChhHEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEE
Confidence            367787643321 3   689999999999999999999999999999985   765   4 5788999999999999999


Q ss_pred             EeC
Q psy13905         97 EGN   99 (248)
Q Consensus        97 vD~   99 (248)
                      +-.
T Consensus        71 ~~r   73 (96)
T 3k9o_B           71 VLR   73 (96)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            853

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.18  E-value=2.7e-11  Score=93.79  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...+.|+|.+..... .   ..++++++||.+||++|+..+|+|++.|||+|.   |+.   | +|+.+|++|++++|++
T Consensus        21 ~~~m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~ygI~~g~t   89 (106)
T 1ttn_A           21 GYECQLRLRLSTGKD-L---KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS---GRP---L-TDKMKFEELKIPKDYV   89 (106)
T ss_dssp             CCSEEEEEEETTTEE-E---EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET---TEE---C-CTTSHHHHCCCSSSCE
T ss_pred             CCeEEEEEEcCCCCE-E---EEEeCCCCcHHHHHHHHHHHHCcCcccEEEEEC---CEE---C-CCCCcHHHcCCCCCCE
Confidence            346889998643331 3   689999999999999999999999999999986   765   4 6789999999999999


Q ss_pred             EEEEeCC
Q psy13905         94 LFVEGNY  100 (248)
Q Consensus        94 IhVvD~~  100 (248)
                      |||+...
T Consensus        90 i~lv~~~   96 (106)
T 1ttn_A           90 VQVIVSQ   96 (106)
T ss_dssp             EEEECCC
T ss_pred             EEEEEeC
Confidence            9999753

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.18  E-value=4.6e-11  Score=93.29  Aligned_cols=77  Identities=14%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             CceEEEEEE-eCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC-CCC
Q psy13905         14 GGTVELYIT-NSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV-ENE   91 (248)
Q Consensus        14 ~~~V~v~It-S~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i-~dG   91 (248)
                      ++.|++.|+ ....+. ...+..++.|+.||++||++|+...|+||+.|||++.   |+    +.+|+++|++||| ++|
T Consensus        20 ~~~i~l~v~v~d~~s~-~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~g---gk----ll~D~~TL~~ygI~~~G   91 (105)
T 4dbg_A           20 TQDIRLWVSVEDAQMH-TVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIG---QR----LARDQETLHSHGVRQNG   91 (105)
T ss_dssp             CCCEEEEEEEEESSSC-CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TE----EECTTCBTGGGTCCSTT
T ss_pred             CCcEEEEEEEEccCCC-CceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEecc---Ce----EccCcCcHHHcCCCCCC
Confidence            346666666 222220 0113789999999999999999999999999997653   43    4578999999999 599


Q ss_pred             cEEEEEe
Q psy13905         92 MTLFVEG   98 (248)
Q Consensus        92 ~~IhVvD   98 (248)
                      ++||++=
T Consensus        92 ~t~hL~l   98 (105)
T 4dbg_A           92 DSAYLYL   98 (105)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9999874

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.17  E-value=3.2e-11  Score=93.46  Aligned_cols=73  Identities=21%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      ++|+|.+..... .   ..++++++||.+||++|+..+|+|++.|||+|.   |+.   | .|+.+|++|+|++|++|||
T Consensus         2 m~I~Vk~~~g~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~~i~~g~~i~l   70 (106)
T 3m62_B            2 VSLTFKNFKKEK-V---PLDLEPSNTILETKTKLAQSISCEESQIKLIYS---GKV---L-QDSKTVSECGLKDGDQVVF   70 (106)
T ss_dssp             -CEEEECTTCCE-E---EECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET---TEE---C-CTTSBTTTTTCCTTCEEEE
T ss_pred             EEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC---CEE---C-CCcCCHHHcCCCCCCEEEE
Confidence            467888633321 3   688999999999999999999999999999986   776   4 6789999999999999999


Q ss_pred             EeCC
Q psy13905         97 EGNY  100 (248)
Q Consensus        97 vD~~  100 (248)
                      +-..
T Consensus        71 v~~~   74 (106)
T 3m62_B           71 MVSQ   74 (106)
T ss_dssp             ECCC
T ss_pred             EEcC
Confidence            9753

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.16  E-value=6.8e-11  Score=88.37  Aligned_cols=70  Identities=21%  Similarity=0.292  Sum_probs=58.4

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+..... .   +.++++++||++||++|+..+|+||+.|||++.   |+.   | .|+.+|++|++.+|++||++
T Consensus        11 ~i~v~~~~G~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~~i~l~   79 (88)
T 1sif_A           11 QLFIKTLTGKT-F---TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV   79 (88)
T ss_dssp             EEEEEETTSCE-E---EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCE-E---EEEECCCChHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCCCcHHHcCCCCCCEEEEE
Confidence            45666433331 3   789999999999999999999999999999985   765   4 57899999999999999987


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        80 ~   80 (88)
T 1sif_A           80 L   80 (88)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.15  E-value=4.8e-11  Score=91.08  Aligned_cols=75  Identities=19%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...++|+|++.... +.   +..++++.||.+||++|+..+|+||++|||++.   |+.   | .|+ +|.+|+|++|++
T Consensus         5 ~~~m~i~Vk~~g~~-~~---~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~---Gk~---L-~D~-tL~~~~I~~g~~   72 (96)
T 1wgg_A            5 SSGYSVTVKWGKEK-FE---GVELNTDEPPMVFKAQLFALTGVQPARQKVMVK---GGT---L-KDD-DWGNIKMKNGMT   72 (96)
T ss_dssp             CCEEEEEEEETTEE-EE---EEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET---TEE---C-CSS-CCCSCCCCSSCE
T ss_pred             CcEEEEEEEECCEE-EE---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEEC---CcC---C-CCC-CHHHCCCCCCCE
Confidence            45788999875433 11   488999999999999999999999999999975   766   5 455 999999999999


Q ss_pred             EEEEeCC
Q psy13905         94 LFVEGNY  100 (248)
Q Consensus        94 IhVvD~~  100 (248)
                      ||++-+.
T Consensus        73 i~l~~~~   79 (96)
T 1wgg_A           73 VLMMGSA   79 (96)
T ss_dssp             EECCCCC
T ss_pred             EEEEecc
Confidence            9998653

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.15  E-value=2.3e-11  Score=91.49  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=62.3

Q ss_pred             CceEEEEEEeCCCCcccccceE-EecCCCCHHHHHHHHHHHHCCCCCCeEEE---EEeCCCceeeccCCCCcccCCCCCC
Q psy13905         14 GGTVELYITNSKDKHESCLNLK-KLKLNNTIGELKQKLELLTGQMSSNMTIS---LYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~-r~~~~~TI~eLK~KLe~~tGipp~~mrL~---l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      ...++|+|+.....  .   .. .++++.||.+||++|+..+|+||++|||+   +.   |+.   | .|+.+|++|+|.
T Consensus         5 ~~~m~i~Vk~~g~~--~---~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~---Gk~---L-~D~~~L~~~~i~   72 (90)
T 1v5t_A            5 SSGLPIIVKWGGQE--Y---SVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVK---GKP---A-ENDVKLGALKLK   72 (90)
T ss_dssp             CCSCCEEEEETTEE--E---EECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEET---TEE---C-CTTSBHHHHTCC
T ss_pred             CceEEEEEEECCEE--E---EEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccC---CcC---c-CCCCCHHHcCCC
Confidence            34577888874433  3   67 88999999999999999999999999999   75   665   4 678999999999


Q ss_pred             CCcEEEEEeC
Q psy13905         90 NEMTLFVEGN   99 (248)
Q Consensus        90 dG~~IhVvD~   99 (248)
                      +|.+||++-+
T Consensus        73 ~g~~l~l~~~   82 (90)
T 1v5t_A           73 PNTKIMMMGT   82 (90)
T ss_dssp             TTEEEEEECC
T ss_pred             CCCEEEEEec
Confidence            9999999864

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.13  E-value=3.4e-11  Score=90.81  Aligned_cols=73  Identities=19%  Similarity=0.214  Sum_probs=61.0

Q ss_pred             EEEEEEeCCCC-cccccceEEecCCCCHHHHHHHH-HHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCC-CCCcE
Q psy13905         17 VELYITNSKDK-HESCLNLKKLKLNNTIGELKQKL-ELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV-ENEMT   93 (248)
Q Consensus        17 V~v~ItS~~~s-~~s~~~E~r~~~~~TI~eLK~KL-e~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i-~dG~~   93 (248)
                      +.|+|.+.... +..   +..++++.||.+||++| +..+|+||++|||+|.   |+.   | .|+.+|++|++ ++|++
T Consensus         2 mqI~VKtl~g~~~~i---~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~y~I~~~~st   71 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSI---EHDFSPSDTILQIKQHLISEEKASHISEIKLLLK---GKV---L-HDNLFLSDLKVTPANST   71 (87)
T ss_dssp             CEEEEEECSSSCEEC---CEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEET---TEE---C-CTTCBHHHHCCCGGGCE
T ss_pred             EEEEEEcCCCCEEEE---EEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEEC---CEE---C-cCcCCHHHcCCCCCCCE
Confidence            57888875443 222   55677999999999999 9999999999999986   877   4 78899999999 79999


Q ss_pred             EEEEeC
Q psy13905         94 LFVEGN   99 (248)
Q Consensus        94 IhVvD~   99 (248)
                      |||.-+
T Consensus        72 l~v~~~   77 (87)
T 2lxa_A           72 ITVMIK   77 (87)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            999865

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.11  E-value=1.7e-10  Score=87.57  Aligned_cols=72  Identities=17%  Similarity=0.263  Sum_probs=60.7

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      +|+|.+..... .   +.+++++.||.+||++|+..+|+||+.|+|+|.   |+.   | +|+.+|++|++.+|++|||+
T Consensus         2 ~I~Vk~~~g~~-~---~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~---Gk~---L-~D~~tL~~~gi~~g~~i~l~   70 (98)
T 1yx5_B            2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV   70 (98)
T ss_dssp             EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC---CEE---C-CCCCCHHHcCCCCCCEEEEE
Confidence            57777643321 3   689999999999999999999999999999985   765   4 57899999999999999998


Q ss_pred             eCC
Q psy13905         98 GNY  100 (248)
Q Consensus        98 D~~  100 (248)
                      ...
T Consensus        71 ~~~   73 (98)
T 1yx5_B           71 LRL   73 (98)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            753

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.11  E-value=7.8e-11  Score=90.79  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH-HCCCC-CCeEEEEEeCCCceeeccCCCCcccCCC--C
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL-TGQMS-SNMTISLYNRNHDLVSHLSDNSMLLGQY--P   87 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~-tGipp-~~mrL~l~~~~g~~i~~L~~d~~~L~~y--~   87 (248)
                      .+.+.+.|+|.+.......  +...+++++||.+||++|+.. +|+|| ++|||+|.   |+.   | .|+.+|++|  +
T Consensus        19 ~~~~~m~I~VK~~~g~~~~--i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~---Gk~---L-~D~~tL~~y~~~   89 (99)
T 2kdb_A           19 FQGHPVTLIIKAPNQKYSD--QTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYS---GRL---L-PDHLQLKDILRK   89 (99)
T ss_dssp             ----CEEEEEECTTSSSCC--EEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEET---TEE---E-CTTSBTHHHHTT
T ss_pred             CCCCeEEEEEEcCCCCEEE--EEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEEC---CEE---C-CCCCCHHHHhcC
Confidence            3456789999975433111  257779999999999999986 67775 99999987   877   4 588999999  9


Q ss_pred             CCCCcEEEEE
Q psy13905         88 VENEMTLFVE   97 (248)
Q Consensus        88 i~dG~~IhVv   97 (248)
                      |++|++||++
T Consensus        90 I~~~~tihLv   99 (99)
T 2kdb_A           90 QDEYHMVHLV   99 (99)
T ss_dssp             TCSEEEEEEC
T ss_pred             CCCCCEEEeC
Confidence            9999999985

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.11  E-value=1.2e-10  Score=84.55  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=61.2

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .++|+|.+..... .   ..+++++.||.+||++++..+|+||++|+|+|.   |+.   | .|+.+|++|++++|++||
T Consensus         3 ~m~i~vk~~~g~~-~---~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~---G~~---L-~d~~tl~~~~i~~~~~i~   71 (79)
T 2uyz_B            3 YIKLKVIGQDSSE-I---HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQR---I-ADNHTPKELGMEEEDVIE   71 (79)
T ss_dssp             EEEEEEECTTCCE-E---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCHHHHTCCTTEEEE
T ss_pred             eEEEEEECCCCCE-E---EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC---CEE---e-CCCCCHHHcCCCCCCEEE
Confidence            4678888654331 3   688999999999999999999999999999986   776   4 578999999999999999


Q ss_pred             EEe
Q psy13905         96 VEG   98 (248)
Q Consensus        96 VvD   98 (248)
                      ++-
T Consensus        72 l~~   74 (79)
T 2uyz_B           72 VYQ   74 (79)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.11  E-value=2.4e-10  Score=89.82  Aligned_cols=75  Identities=17%  Similarity=0.257  Sum_probs=62.7

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +...|+|....... .   +.++++++||.+||++|+..+|+||+.|||++.   |+.   | +|+.+|++|++.+|++|
T Consensus         8 ~~~~i~vk~l~G~~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~ygI~~gstI   76 (114)
T 2kdi_A            8 GEFQIFAKTLTGKT-I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA---GKQ---L-EDGRTLSDYNIQRESTL   76 (114)
T ss_dssp             CCCEEEEEETTCCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTTTTTCCSSCEE
T ss_pred             CcEEEEEEeCCCcE-E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---CEE---C-CCCCcHHHCCCCCCCEE
Confidence            34567777544331 3   789999999999999999999999999999986   765   4 57899999999999999


Q ss_pred             EEEeCC
Q psy13905         95 FVEGNY  100 (248)
Q Consensus        95 hVvD~~  100 (248)
                      ||+...
T Consensus        77 ~l~~~~   82 (114)
T 2kdi_A           77 HLVLRL   82 (114)
T ss_dssp             EEEECC
T ss_pred             EEEEEc
Confidence            999853

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.10  E-value=3.1e-10  Score=91.22  Aligned_cols=99  Identities=15%  Similarity=0.245  Sum_probs=75.1

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+..... .   +.++++++||.+||++|+..+|+||+.|+|.+.   |+.   | +|+.+|++|++.+|++|||+
T Consensus         2 ~i~vk~~~g~~-~---~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~---g~~---L-~d~~tL~~~~i~~~~~l~l~   70 (152)
T 3b08_A            2 QIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV   70 (152)
T ss_dssp             EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCE-E---EEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC---CeE---C-cCcccHHHhccCCCCeeEEE
Confidence            56777643321 3   789999999999999999999999999999986   665   4 67899999999999999999


Q ss_pred             eCC-------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh
Q psy13905         98 GNY-------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK  134 (248)
Q Consensus        98 D~~-------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k  134 (248)
                      ...       +.. +..+.-.++++      ..+||..+|++..
T Consensus        71 ~~~~~~~~i~Vk~-~~g~~~~~~v~------~~~tv~~lK~~i~  107 (152)
T 3b08_A           71 LRLRGGMQIFVKT-LTGKTITLEVE------PSDTIENVKAKIQ  107 (152)
T ss_dssp             ECCTTCEEEEEEE-SSSCEEEEEEC------TTCBHHHHHHHHH
T ss_pred             eecccccceeeee-cCCCEEEEEeC------CCCcHHHHHHHHH
Confidence            864       111 01223344444      3489999998754

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.09  E-value=1.5e-10  Score=88.14  Aligned_cols=76  Identities=13%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      +....+.|+|.+..... .   ..++.++.||.+||++|+..+|+||++|||+|.   |+.   | .|+.+|++|++++|
T Consensus        17 ~~~~~m~I~Vk~~~g~~-~---~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~---Gk~---L-~d~~tl~dy~i~~g   85 (97)
T 1wyw_B           17 KEGEYIKLKVIGQDSSE-I---HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQR---I-ADNHTPKELGMEEE   85 (97)
T ss_dssp             --CCEEEEEEECTTCCE-E---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCHHHHTCCTT
T ss_pred             CCCCcEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC---CeE---c-CCCCCHHHCCCCCC
Confidence            34456889998654331 3   688999999999999999999999999999986   776   4 68899999999999


Q ss_pred             cEEEEEe
Q psy13905         92 MTLFVEG   98 (248)
Q Consensus        92 ~~IhVvD   98 (248)
                      ++|||+-
T Consensus        86 ~~I~l~~   92 (97)
T 1wyw_B           86 DVIEVYQ   92 (97)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9999974

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.08  E-value=2.7e-10  Score=94.66  Aligned_cols=103  Identities=15%  Similarity=0.236  Sum_probs=79.1

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...+.|+|....... .   ..++++++||.+||++|+..+|+||++|+|++.   |+.   | +|+.+|++|++.+|++
T Consensus        18 ~~~m~i~Vk~~~g~~-~---~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~---g~~---L-~d~~tL~~~~i~~~~~   86 (172)
T 3u30_A           18 GSHMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKEST   86 (172)
T ss_dssp             -CCEEEEEEETTTEE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTGGGTCCTTCE
T ss_pred             CCcEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC---Ccc---c-cccCCHhHcCCcccce
Confidence            446788998643321 3   689999999999999999999999999999985   665   4 6889999999999999


Q ss_pred             EEEEeCC-------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh
Q psy13905         94 LFVEGNY-------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK  134 (248)
Q Consensus        94 IhVvD~~-------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k  134 (248)
                      ||++-.-       +... ..+.-.++++      ..+||...|++..
T Consensus        87 l~l~~~~~gg~~i~Vk~~-~g~~~~l~v~------~~~tV~~lK~~I~  127 (172)
T 3u30_A           87 LHLVLRLRGGMQIFVKTL-TGKTITLEVE------PSDTIENVKAKIQ  127 (172)
T ss_dssp             EEEEECCCCCEEEEEEES-SCCEEEEEEC------TTCBHHHHHHHHH
T ss_pred             eeeeecccccccceeecc-cCcceeEEec------CCCCHHHHHHHHH
Confidence            9999653       1110 2344455555      4589999998875

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.07  E-value=2.3e-10  Score=86.28  Aligned_cols=75  Identities=20%  Similarity=0.251  Sum_probs=61.5

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +...++|+|++..... .   +.++++++||.+||++|+..+   +++|||+|.   |+.   |.+++.+|++|+|++|+
T Consensus         4 ~~~~m~i~Vk~~~g~~-~---~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~---Gk~---L~D~~~tL~~y~i~~g~   70 (95)
T 1wia_A            4 GSSGINVRLKFLNDTE-E---LAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQ---GRL---LQDPARTLSSLNITNNC   70 (95)
T ss_dssp             CCCSEEEEEEETTTEE-E---EEEECSSSBHHHHHHHHSSST---TTTCEEEET---TEE---CCCSSCBTTTTTCCTTE
T ss_pred             CCCeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHhhC---cCcEEEEEC---CEE---ccCCcCCHHHcCCCCCC
Confidence            3457899998643321 3   789999999999999999998   999999986   776   54444999999999999


Q ss_pred             EEEEEeCC
Q psy13905         93 TLFVEGNY  100 (248)
Q Consensus        93 ~IhVvD~~  100 (248)
                      +|||+...
T Consensus        71 ~i~l~~~~   78 (95)
T 1wia_A           71 VIHCHRSP   78 (95)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEECC
Confidence            99999854

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=98.66  E-value=1.3e-11  Score=88.91  Aligned_cols=57  Identities=12%  Similarity=0.181  Sum_probs=52.2

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      +.++++++||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|++.+|++||++
T Consensus        14 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~---gk~---L-~d~~tL~~~~i~~g~~i~l~   70 (76)
T 3b1l_X           14 PVEVDSDTSILQLKEVVAKQQGVPADQLRVIFA---GKE---L-PNHLTVQNCDLEQQSIVHIV   70 (76)
Confidence            688999999999999999999999999999986   665   4 57899999999999999986

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.07  E-value=1.7e-10  Score=89.50  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             ceEEEEEEeCCC---CcccccceEEecC---------CCCHHHHHHHHHHHH--CCCCCC-eEEEEEeCCCceeeccCCC
Q psy13905         15 GTVELYITNSKD---KHESCLNLKKLKL---------NNTIGELKQKLELLT--GQMSSN-MTISLYNRNHDLVSHLSDN   79 (248)
Q Consensus        15 ~~V~v~ItS~~~---s~~s~~~E~r~~~---------~~TI~eLK~KLe~~t--Gipp~~-mrL~l~~~~g~~i~~L~~d   79 (248)
                      +.+.|+|++...   .. .   +..|++         ++||.+||++|+..+  |+||+. |||+|.   |+.   | .|
T Consensus        11 ~~~~i~Vk~~~~~~~~~-~---~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~---Gk~---L-~D   79 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPK-S---ILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC---GRK---L-KD   79 (107)
T ss_dssp             CSCCEEEEETTCTTSCC-E---EECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET---TEE---C-CT
T ss_pred             CceEEEEEeCCCCCccE-E---EEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC---CeE---C-CC
Confidence            357788886544   21 2   567554         599999999999999  999999 999986   776   4 67


Q ss_pred             CcccCCCCCCCCcEEEEEeC
Q psy13905         80 SMLLGQYPVENEMTLFVEGN   99 (248)
Q Consensus        80 ~~~L~~y~i~dG~~IhVvD~   99 (248)
                      +.+|.+|++++|++||++..
T Consensus        80 ~~tL~~y~i~~g~~i~lv~~   99 (107)
T 1x1m_A           80 DQTLDFYGIQPGSTVHVLRK   99 (107)
T ss_dssp             TCBHHHHTCCTTCEEEEEES
T ss_pred             CCcHHHcCCCCCCEEEEEeC
Confidence            89999999999999999975

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.4e-10  Score=92.13  Aligned_cols=76  Identities=18%  Similarity=0.137  Sum_probs=63.6

Q ss_pred             CceEEEEEE-eCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         14 GGTVELYIT-NSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        14 ~~~V~v~It-S~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ++.++|.|. ++.... .   +..|+++.||.+||++|...+|+|++.|+|+|.   |+.   | .|+.+|.+||+++|.
T Consensus        13 ~~~itvkv~l~~~~~k-~---tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~---GKi---L-KD~eTL~~~gIk~g~   81 (118)
T 2daf_A           13 DSLATVKVVLIPVGQE-I---VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS---GKI---L-KNNETLVQHGVKPQE   81 (118)
T ss_dssp             SSCEEEEEEETTTCCE-E---EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET---TEE---E-CSSCCHHHHSCCSSC
T ss_pred             CccEEEEEEEcCCCcE-E---EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC---CeE---c-CCcchHHHcCCCCCC
Confidence            455677765 433332 4   789999999999999999999999999999997   887   4 688999999999999


Q ss_pred             EEEEEeCC
Q psy13905         93 TLFVEGNY  100 (248)
Q Consensus        93 ~IhVvD~~  100 (248)
                      +||++-.+
T Consensus        82 TIhLvi~s   89 (118)
T 2daf_A           82 IVQVEIFS   89 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999644

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.06  E-value=5e-10  Score=91.55  Aligned_cols=102  Identities=10%  Similarity=0.110  Sum_probs=77.7

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +.|+|.+..... .   ..+++++.||.+||++|+..+|+||++|||+++. .|+.   | +|+.+|++|++.+|++||+
T Consensus         3 m~i~vk~~~g~~-~---~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~-~g~~---L-~d~~tL~~y~i~~~~~l~l   73 (159)
T 3rt3_B            3 WDLTVKMLAGNE-F---QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLL   73 (159)
T ss_dssp             CEEEEEETTSCE-E---EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CTTSCGGGGTCCTTCEEEE
T ss_pred             eEEEEEECCCCE-E---EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC-CCCC---C-CCCCCHHHcCCCCCCEEEE
Confidence            467787543331 3   6899999999999999999999999999999541 2555   4 7899999999999999999


Q ss_pred             EeCC--------CCCCCCCceeeecCCHHHHhhhhHHHHHHHHHhh
Q psy13905         97 EGNY--------LTDGLESSETKYVLPEEKYKEHKENLKNFMMKQK  134 (248)
Q Consensus        97 vD~~--------l~D~~~s~veky~lsee~Y~~r~dtvr~~kk~~k  134 (248)
                      +-..        ... +..+.-.++++.      .+||...|++..
T Consensus        74 ~~~~~~~~m~i~vk~-~~g~~~~~~v~~------~~tV~~lK~~i~  112 (159)
T 3rt3_B           74 VVDKSDEPLSILVRN-NKGRSSTYEVRL------TQTVAHLKQQVS  112 (159)
T ss_dssp             EECCCCCCEEEEEEC-TTSCEEEEEECT------TSBHHHHHHHHH
T ss_pred             EccCCCCcEEEEEEC-CCCCEEEEEeCC------CCCHHHHHHHHH
Confidence            9762        112 023444566665      499999998765

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.05  E-value=1.1e-10  Score=91.11  Aligned_cols=74  Identities=11%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             ceEEEEEEeC-CCCcccccceEEecCCCCHHHHHHHHHHHHCCCC---------------CCeEEEEEeCCCceeeccCC
Q psy13905         15 GTVELYITNS-KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMS---------------SNMTISLYNRNHDLVSHLSD   78 (248)
Q Consensus        15 ~~V~v~ItS~-~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp---------------~~mrL~l~~~~g~~i~~L~~   78 (248)
                      ..++|+|... ...  .   +..++++.||.+||++|+..+|+||               .+|+|++.   |+.   |.+
T Consensus         6 ~~M~I~Vk~l~g~~--~---~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~---Gk~---L~d   74 (105)
T 1v2y_A            6 SGMTVRVCKMDGEV--M---PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA---GEK---LTE   74 (105)
T ss_dssp             CSEEEEEECSSSCE--E---EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS---SCE---ECC
T ss_pred             CcEEEEEEecCCCE--E---EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeC---CcC---ccC
Confidence            4578888753 333  3   7999999999999999999999998               46799975   776   667


Q ss_pred             CCcccCCCCCCCCcEEEEEeC
Q psy13905         79 NSMLLGQYPVENEMTLFVEGN   99 (248)
Q Consensus        79 d~~~L~~y~i~dG~~IhVvD~   99 (248)
                      |.++|.+|+|++|++||++-.
T Consensus        75 D~~tL~dygI~~g~~l~lv~~   95 (105)
T 1v2y_A           75 DRKKLRDYGIRNRDEVSFIKK   95 (105)
T ss_dssp             SSSBHHHHTCCSSEEEEEEEC
T ss_pred             CcCCHHHcCCCCCCEEEEEeh
Confidence            889999999999999999863

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.9e-10  Score=88.99  Aligned_cols=74  Identities=20%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      ++.+.|+.....  .   ..+++++.||.+||++|+..|||||++|||.+. +.|+    | .|+++|++|+|++|++||
T Consensus         9 m~~~~vk~~Gk~--~---~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~-~~gk----L-~D~~tLs~~~I~~gstL~   77 (100)
T 2dzm_A            9 MLDFRVEYRDRN--V---DVVLEDTCTVGEIKQILENELQIPVSKMLLKGW-KTGD----V-EDSTVLKSLHLPKNNSLY   77 (100)
T ss_dssp             EEEEEEECSSCE--E---EEEEETTSBHHHHHHHHHHHHCCCTTTCCEECC-SSSC----C-CTTSBHHHHCCCSEEEEE
T ss_pred             eEEEEEEeCCeE--E---EEEECCCCcHHHHHHHHHHHHCCChhHeEEEcc-CCCC----C-CCcCCHHHcCCCCCCEEE
Confidence            577778876665  4   688999999999999999999999999999753 2243    3 678999999999999999


Q ss_pred             EEeCC
Q psy13905         96 VEGNY  100 (248)
Q Consensus        96 VvD~~  100 (248)
                      ++=..
T Consensus        78 lvl~~   82 (100)
T 2dzm_A           78 VLTPD   82 (100)
T ss_dssp             ECCSS
T ss_pred             EEecC
Confidence            98554

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.04  E-value=4e-10  Score=89.63  Aligned_cols=58  Identities=19%  Similarity=0.144  Sum_probs=53.3

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC-------CcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN-------EMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d-------G~~IhVvD   98 (248)
                      ...+.++.||.+||+||+.++||||++|||++.   |+.    .+|+++|++|+|++       +++||++=
T Consensus        15 ~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~---Gk~----LeD~kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B           15 FTDAKESSTVFELKRIVEGILKRPPDEQRLYKD---DQL----LDDGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET---TEE----CCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             EEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeC---CeE----CCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence            678899999999999999999999999999975   665    48999999999999       99999983

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.03  E-value=5.7e-10  Score=91.19  Aligned_cols=73  Identities=22%  Similarity=0.380  Sum_probs=59.8

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      +.+.|+|.+.... ..   ..+++++.||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|++++|++|
T Consensus        80 ~~m~i~vk~~~g~-~~---~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---G~~---L-~d~~tL~~y~i~~g~~l  148 (159)
T 3rt3_B           80 EPLSILVRNNKGR-SS---TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKP---L-EDQLPLGEYGLKPLSTV  148 (159)
T ss_dssp             CCEEEEEECTTSC-EE---EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEE
T ss_pred             CcEEEEEECCCCC-EE---EEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEEC---Cee---c-CCCCCHHHcCCCCCCEE
Confidence            3455666653322 13   689999999999999999999999999999985   766   4 67899999999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      |++-
T Consensus       149 ~l~~  152 (159)
T 3rt3_B          149 FMNL  152 (159)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9973

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.02  E-value=6.8e-10  Score=92.97  Aligned_cols=71  Identities=17%  Similarity=0.274  Sum_probs=60.0

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+..... .   ..++++++||.+||++|+..+|+||++|||++.   |+.   | +|+.+|++|++++|++||++
T Consensus         2 qI~Vk~~~Gk~-~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~y~I~~gstI~Lv   70 (169)
T 3l0w_B            2 QIFVKTLTGKT-I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV   70 (169)
T ss_dssp             EEEEEETTSCE-E---EEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET---TEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCE-E---EEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC---Ccc---c-cCcCcHHHcCCCCCCEEEEE
Confidence            56777643221 3   689999999999999999999999999999986   766   4 67899999999999999998


Q ss_pred             eC
Q psy13905         98 GN   99 (248)
Q Consensus        98 D~   99 (248)
                      -.
T Consensus        71 lr   72 (169)
T 3l0w_B           71 LR   72 (169)
T ss_dssp             EC
T ss_pred             EE
Confidence            53

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.01  E-value=2.8e-10  Score=90.57  Aligned_cols=71  Identities=21%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC-------
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE-------   89 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~-------   89 (248)
                      +-|+|......  .   ...+.++.||.+||+||+.++||||++|||++.   |+.    .+|+++|++|+|+       
T Consensus         3 mfl~ir~~ktt--i---~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~---Gk~----LeD~~TLsdy~I~~~~a~~q   70 (118)
T 2fnj_B            3 VFLMIRRHKTT--I---FTDAKESSTVFELKRIVEGILKRPPEEQRLYKD---DQL----LDDGKTLGECGFTSQTARPQ   70 (118)
T ss_dssp             EEEEEEEBTEE--E---EEEEETTSBHHHHHHHHHHHHCCCGGGEEEEET---TEE----CCTTSBHHHHTCCTTTSBTT
T ss_pred             EEEEEecCCEE--E---EEEeCCcChHHHHHHHHHHHhCCCHHHeEEEEC---CeE----CCCCCCHHHcCcccccccCC
Confidence            34555544333  3   688999999999999999999999999999964   776    4799999999999       


Q ss_pred             CCcEEEEEeC
Q psy13905         90 NEMTLFVEGN   99 (248)
Q Consensus        90 dG~~IhVvD~   99 (248)
                      .+++||++=.
T Consensus        71 ~~stL~L~lr   80 (118)
T 2fnj_B           71 APATVGLAFR   80 (118)
T ss_dssp             BCEEEEEEEB
T ss_pred             CCCEEEEEec
Confidence            7999999843

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=98.99  E-value=7.2e-10  Score=92.07  Aligned_cols=70  Identities=17%  Similarity=0.299  Sum_probs=58.1

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +.|+|.+.... ..   ..++++++||.+||++|+..+|+||++|+|++.   |+.   | +|+.+|++|++++|++||+
T Consensus        97 ~~i~Vk~~~g~-~~---~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~~---L-~D~~tL~~y~i~~g~tl~l  165 (172)
T 3u30_A           97 MQIFVKTLTGK-TI---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL  165 (172)
T ss_dssp             EEEEEEESSCC-EE---EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEE---C-CTTSBSGGGTCCTTCEEEE
T ss_pred             ccceeecccCc-ce---eEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC---Ccc---C-CCCCcHHHhCCCCCCEEEE
Confidence            44555543222 13   689999999999999999999999999999986   765   4 6889999999999999998


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      +
T Consensus       166 ~  166 (172)
T 3u30_A          166 V  166 (172)
T ss_dssp             C
T ss_pred             E
Confidence            6

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.1e-09  Score=82.51  Aligned_cols=77  Identities=21%  Similarity=0.309  Sum_probs=61.5

Q ss_pred             eEEEEEEeCCCCcccccceE-EecCCCCHHHHHHHHHHH-HCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         16 TVELYITNSKDKHESCLNLK-KLKLNNTIGELKQKLELL-TGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~-r~~~~~TI~eLK~KLe~~-tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      .+.|+|.+.......|  +. .++++.||.+||++|+.. .|+||++|||+|. ..|+.   | +|+.+|++|++.+|++
T Consensus        10 ~M~I~Vk~~~g~~~~~--~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~-~~Gk~---L-~D~~tL~~y~i~~~st   82 (88)
T 2dzj_A           10 HYEVEILDAKTREKLC--FLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLD-PKGKS---L-KDEDVLQKLPVGTTAT   82 (88)
T ss_dssp             CEEEEEEESSSCCCCE--EEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESS-TTSCC---C-CTTCBTTTSSCCSEEE
T ss_pred             EEEEEEECCCCCEEee--EEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEec-CCCcC---c-CCCCCHHHcCCCCCCE
Confidence            3678888654331111  47 899999999999999995 8999999999874 34665   4 6889999999999999


Q ss_pred             EEEEeC
Q psy13905         94 LFVEGN   99 (248)
Q Consensus        94 IhVvD~   99 (248)
                      |||-|.
T Consensus        83 l~~KDL   88 (88)
T 2dzj_A           83 LYFRDL   88 (88)
T ss_dssp             EEECCC
T ss_pred             EEEEeC
Confidence            999873

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=98.96  E-value=1.7e-09  Score=86.90  Aligned_cols=71  Identities=17%  Similarity=0.274  Sum_probs=59.2

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +.|+|.+.... ..   +.+++++.||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|++.+|++||+
T Consensus        77 ~~i~Vk~~~g~-~~---~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~---g~~---L-~d~~tL~~~~i~~~~~i~l  145 (152)
T 3b08_A           77 MQIFVKTLTGK-TI---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL  145 (152)
T ss_dssp             EEEEEEESSSC-EE---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEE
T ss_pred             cceeeeecCCC-EE---EEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC---CEE---C-CCCCCHHHcCCCCCCEEEE
Confidence            45666643322 13   789999999999999999999999999999985   765   4 6889999999999999999


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      +-
T Consensus       146 ~~  147 (152)
T 3b08_A          146 VL  147 (152)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=98.96  E-value=9.2e-10  Score=94.11  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=60.3

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +.|+|.+..... .   ..+++++.||.+||++|+..+|+||++|+|++.   |+.   | +|+.+|++|+|++|++||+
T Consensus       106 MqI~VKtl~Gkt-~---~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~---Gk~---L-~D~~tL~dygI~~gstI~L  174 (189)
T 3q3f_A          106 GQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL  174 (189)
T ss_dssp             EEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET---TEE---C-CTTCBGGGGTCCTTCEEEE
T ss_pred             eeeeeecCCCCE-E---EEEeCCCCcHHHHHHHHHhccCCCHHHEEEEEC---CEE---C-CCCCCHHHCCCCCCCEEEE
Confidence            567787643321 3   689999999999999999999999999999986   766   4 6789999999999999999


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      +-
T Consensus       175 vl  176 (189)
T 3q3f_A          175 VL  176 (189)
T ss_dssp             CC
T ss_pred             EE
Confidence            84

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=98.95  E-value=7.5e-11  Score=94.23  Aligned_cols=70  Identities=16%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             EEEEEeCC-CCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         18 ELYITNSK-DKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        18 ~v~ItS~~-~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      .|+|.+.. ..  .   +.++++++||.+||++|+..+|+||+.|+|++.   |+.   | +|+.+|++|+|++|++|||
T Consensus         2 ~I~Vk~~~G~~--~---~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~~~I~~gsti~l   69 (128)
T 3u5e_m            2 QIFVKTLTGKT--I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL   69 (128)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCE--E---EEEeCCCCCHHHHHHHHHHHhCcChHHEEEEEC---CEE---C-CCCCchhhhccCCCCEEEE
Confidence            45666532 32  3   688999999999999999999999999999987   765   4 6889999999999999999


Q ss_pred             EeC
Q psy13905         97 EGN   99 (248)
Q Consensus        97 vD~   99 (248)
                      +-.
T Consensus        70 ~~r   72 (128)
T 3u5e_m           70 VLR   72 (128)
T ss_dssp             ---
T ss_pred             EEE
Confidence            853

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=98.94  E-value=2.6e-09  Score=97.56  Aligned_cols=82  Identities=17%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             eeeeecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCC
Q psy13905          6 EYMDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQ   85 (248)
Q Consensus         6 ~~~~~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~   85 (248)
                      |..-.-...+.++|+|.+..... .   +.++++++||.+||++|+..+|+||++|||++.   |+.   | +|+.+|++
T Consensus       223 E~~~A~~~~~~MqI~VKtl~Gk~-~---~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~---Gk~---L-~D~~TLsd  291 (307)
T 3ai5_A          223 EFVTAAGITGSMQIFVKTLTGKT-I---TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSD  291 (307)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCE-E---EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET---TEE---C-CTTSBTGG
T ss_pred             eehhccCCCCeEEEEEEeCCCCE-E---EEEECCCCcHHHHHHHHHHHHCcChHHEEEEeC---Cee---c-CCCCCHHH
Confidence            33333345667888998743331 3   789999999999999999999999999999986   765   4 68899999


Q ss_pred             CCCCCCcEEEEEe
Q psy13905         86 YPVENEMTLFVEG   98 (248)
Q Consensus        86 y~i~dG~~IhVvD   98 (248)
                      |+|++|++|||+-
T Consensus       292 ygI~~gstL~Lvl  304 (307)
T 3ai5_A          292 YNIQKESTLHLVL  304 (307)
T ss_dssp             GTCCTTCEEEEEC
T ss_pred             cCCCCCCEEEEEE
Confidence            9999999999973

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=98.91  E-value=1.5e-09  Score=80.80  Aligned_cols=75  Identities=21%  Similarity=0.310  Sum_probs=58.6

Q ss_pred             EEEEEeCCCCcccccceEE-ecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKK-LKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r-~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +|.|.+..-.  .   ... |+++.||.+||++|+..+|+||+.|+|.+.. .++. ..+.+++.+|.+|||.+|.+|||
T Consensus         2 ~i~vr~~~G~--~---~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-p~k~-l~l~~~~~tL~~~gl~~g~~l~v   74 (86)
T 2kzr_A            2 RVRCKAKGGT--H---LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-PPEC-LDLSDRDITLGDLPIQSGDMLIV   74 (86)
T ss_dssp             CEEEEETTEE--E---EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-CCCC-CCCCCSSCBTTTSSCCTTCEEEC
T ss_pred             EEEEEcCCCC--E---EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-CCcc-cccCCCCCCHHHcCCCCCCEEEE
Confidence            4667654433  2   345 8899999999999999999999999998742 2344 22335789999999999999999


Q ss_pred             EeC
Q psy13905         97 EGN   99 (248)
Q Consensus        97 vD~   99 (248)
                      .+.
T Consensus        75 ~~~   77 (86)
T 2kzr_A           75 EED   77 (86)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            985

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.87  E-value=1.9e-09  Score=98.75  Aligned_cols=75  Identities=11%  Similarity=0.095  Sum_probs=62.4

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEE---EEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTIS---LYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~---l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      ...|+|.|++....  .   +..++++.||++||++|+..|||||++|||+   +.   |+.    ..|+.+|++|+|++
T Consensus         3 ~~~i~i~Vk~~g~~--~---~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~---Gk~----l~D~~~L~~~~ik~   70 (320)
T 3shq_A            3 VKEVVVIVKWSGKE--Y---PVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYK---GKT----AADNVKISALELKP   70 (320)
T ss_dssp             -CEEEEEEEETTEE--E---EEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSS---SSB----CCTTSBTTSSCCC-
T ss_pred             CceEEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccC---Ccc----cCccccHHHcCCCC
Confidence            34688999986665  4   7899999999999999999999999999999   43   655    46889999999999


Q ss_pred             CcEEEEEeCC
Q psy13905         91 EMTLFVEGNY  100 (248)
Q Consensus        91 G~~IhVvD~~  100 (248)
                      |++||++-+.
T Consensus        71 g~~l~L~gs~   80 (320)
T 3shq_A           71 NFKLMMVGST   80 (320)
T ss_dssp             -CEEEEECCC
T ss_pred             CCEEEEEccc
Confidence            9999999764

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=98.87  E-value=2.2e-10  Score=94.72  Aligned_cols=69  Identities=16%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             EEEEEeC-CCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         18 ELYITNS-KDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        18 ~v~ItS~-~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      .|+|.+. ...  .   ..++++++||.+||++|+..+|+||++|+|++.   |+.   | +|+.+|++|+|++|++|||
T Consensus         2 qI~VK~l~G~~--~---~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~dygI~~gstL~L   69 (152)
T 3u5c_f            2 QIFVKTLTGKT--I---TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHL   69 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCE--E---EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC---CEE---c-cccCcHHHcCCCCCCEEEE
Confidence            4566653 232  3   688999999999999999999999999999987   765   4 6789999999999999999


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      +-
T Consensus        70 vl   71 (152)
T 3u5c_f           70 VL   71 (152)
T ss_dssp             --
T ss_pred             Ee
Confidence            86

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.86  E-value=7.4e-09  Score=82.02  Aligned_cols=75  Identities=9%  Similarity=0.096  Sum_probs=61.0

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHH------HHCC--CCCCeEEEEEeCCCceeeccCCCCcccC
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLEL------LTGQ--MSSNMTISLYNRNHDLVSHLSDNSMLLG   84 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~------~tGi--pp~~mrL~l~~~~g~~i~~L~~d~~~L~   84 (248)
                      ....+.|+|...... ..   +..++++.||.+||++|+.      .+|+  ||++|||+|.   |+.   | +|+.+|+
T Consensus        13 ~~~~m~I~vKtl~G~-t~---~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~---GK~---L-eD~~TL~   81 (116)
T 1wgh_A           13 PADMINLRLILVSGK-TK---EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ---GRF---L-HGNVTLG   81 (116)
T ss_dssp             CSSSEEEEEECSSSC-EE---EEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET---TEE---E-CSSCBTT
T ss_pred             CCCeEEEEEEeCCCC-EE---EEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEEC---CcC---C-CCCCcHH
Confidence            345688888853323 14   7999999999999999999      7786  6999999997   887   4 7889999


Q ss_pred             CCCCCCC--cEEEEEe
Q psy13905         85 QYPVENE--MTLFVEG   98 (248)
Q Consensus        85 ~y~i~dG--~~IhVvD   98 (248)
                      +|+|..|  .+||++-
T Consensus        82 ~y~I~~~~~~tlhLvl   97 (116)
T 1wgh_A           82 ALKLPFGKTTVMHLVA   97 (116)
T ss_dssp             TTTCCSSCEEEEEEEE
T ss_pred             HcCCCCCCceEEEEEc
Confidence            9999876  5899884

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.83  E-value=4.3e-09  Score=84.57  Aligned_cols=74  Identities=14%  Similarity=0.101  Sum_probs=60.2

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHH-----HHHHCCCC--CCeEEEEEeCCCceeeccCCCCcccCCCC
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKL-----ELLTGQMS--SNMTISLYNRNHDLVSHLSDNSMLLGQYP   87 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KL-----e~~tGipp--~~mrL~l~~~~g~~i~~L~~d~~~L~~y~   87 (248)
                      ..+.|+|.........   ..+++++.||.+||+||     +..+|+|+  ++|||+|.   |+.    .+|+++|++|+
T Consensus        15 ~~~~i~~kt~~G~~i~---~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~---GK~----LeD~~TLsdy~   84 (126)
T 1se9_A           15 NQLEIKFRLTDGSDIG---PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA---GKV----LENSKTVKDYR   84 (126)
T ss_dssp             CCEEEEEEETTSCEEE---EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET---TEE----CCTTSBGGGGS
T ss_pred             ccEEEEEEECCCCEEE---eeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEEC---CeE----CcCCCcHHHcC
Confidence            4667888754332112   58899999999999999     56789997  79999987   887    47999999999


Q ss_pred             CCCC------cEEEEEe
Q psy13905         88 VENE------MTLFVEG   98 (248)
Q Consensus        88 i~dG------~~IhVvD   98 (248)
                      |+.|      .+|||+-
T Consensus        85 I~~~~~~~~v~tmhlVl  101 (126)
T 1se9_A           85 SPVSNLAGAVTTMHVII  101 (126)
T ss_dssp             CCTTSCTTCCEEEEEEE
T ss_pred             CCcCCccCCcEEEEEEe
Confidence            9999      7899986

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=98.73  E-value=1.1e-08  Score=82.09  Aligned_cols=73  Identities=10%  Similarity=0.115  Sum_probs=59.9

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHH------HHCCC--CCCeEEEEEeCCCceeeccCCCCcccCCCC
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLEL------LTGQM--SSNMTISLYNRNHDLVSHLSDNSMLLGQYP   87 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~------~tGip--p~~mrL~l~~~~g~~i~~L~~d~~~L~~y~   87 (248)
                      .+.|+|...... ..   +..++++.||.+||++|+.      .+|+|  |++|||+|.   |+.   | +|+++|++|+
T Consensus        17 ~m~I~vktl~G~-~~---~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~---GK~---L-eD~~TL~~y~   85 (125)
T 2gow_A           17 MINLRLILVSGK-TK---EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ---GRF---L-HGNVTLGALK   85 (125)
T ss_dssp             CEEEEEECTTSC-EE---EEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESS---SSE---E-ESSCBTGGGC
T ss_pred             eEEEEEEeCCCC-EE---EEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEEC---CcC---C-CCCCcHHHcC
Confidence            578888754323 14   7999999999999999998      78984  899999987   887   4 6889999999


Q ss_pred             CCCCc--EEEEEeC
Q psy13905         88 VENEM--TLFVEGN   99 (248)
Q Consensus        88 i~dG~--~IhVvD~   99 (248)
                      |+.|.  +|||+-.
T Consensus        86 I~~~~~~tlhlv~r   99 (125)
T 2gow_A           86 LPFGKTTVMHLVAR   99 (125)
T ss_dssp             CCTTSEEEEEEEEC
T ss_pred             CCCCCceEEEEEec
Confidence            99776  7888753

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.58  E-value=3.4e-08  Score=92.18  Aligned_cols=74  Identities=11%  Similarity=0.203  Sum_probs=60.2

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHH---HHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLEL---LTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~---~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      ++.++|+|++..... .   ...++++.||.+||.||+.   .+|+|++.|||+|.   |+.   | .|+++|.+|+|++
T Consensus         5 ~~~M~I~VKtl~Gk~-~---~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~---GK~---L-~D~~tL~dygI~~   73 (368)
T 1oqy_A            5 SSAVTITLKTLQQQT-F---KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA---GKI---L-SDDVPIRDYRIDE   73 (368)
T ss_dssp             -CCCCEEEEETTTEE-E---EECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS---SSE---E-CSSSBTTTTCCCT
T ss_pred             CceEEEEEEeCCCCE-E---EEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEEC---Cee---c-CCcCCHHHcCCCC
Confidence            456788888753331 3   6889999999999999999   68899999999986   776   4 5789999999999


Q ss_pred             CcEE-EEEe
Q psy13905         91 EMTL-FVEG   98 (248)
Q Consensus        91 G~~I-hVvD   98 (248)
                      |++| |++-
T Consensus        74 gstIv~lv~   82 (368)
T 1oqy_A           74 KNFVVVMVT   82 (368)
T ss_dssp             TSCEEEEEE
T ss_pred             CCEEEEEEe
Confidence            9988 6653

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.45  E-value=6.2e-07  Score=68.16  Aligned_cols=76  Identities=13%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ....|+|.|.+.... ..   ..++.++.++..|++++....|+|+++|||+|.   |+.   | .++.|+.+|++++|.
T Consensus         4 ~~~~i~ikVk~~~g~-~i---~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd---G~~---l-~~~~Tp~dl~medgD   72 (94)
T 2io1_B            4 MNDHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDED   72 (94)
T ss_dssp             --CEEEEEEECTTSC-EE---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCTTTTTCCTTC
T ss_pred             CCCeEEEEEECCCCC-EE---EEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCC
Confidence            345688888864433 13   689999999999999999999999999999986   776   3 677999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|||+-.
T Consensus        73 ~Idv~~~   79 (94)
T 2io1_B           73 TIDVFQQ   79 (94)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999864

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.36  E-value=1.8e-06  Score=62.03  Aligned_cols=70  Identities=14%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      |+|.|.+.... ..   ..++.++.++..|+++.....|+|++++||.|.   |+.   | .++.|+++|++++|.+|||
T Consensus         2 i~lkV~~~~g~-~v---~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~---l-~~~~Tp~~l~medgD~Idv   70 (72)
T 1wm3_A            2 INLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSC-EE---EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET---TEE---C-CTTCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCC-EE---EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC---CEE---c-CCCCCHHHcCCCCCCEEEE
Confidence            67888864333 13   789999999999999999999999999999985   776   3 6779999999999999998


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      .
T Consensus        71 ~   71 (72)
T 1wm3_A           71 F   71 (72)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.30  E-value=2.1e-06  Score=62.97  Aligned_cols=73  Identities=12%  Similarity=0.072  Sum_probs=61.8

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      ..|+|.|.+...+...   ..++.++.++..|+++.....|++++++||.|.   |+.   | .++.|+.+|++++|.+|
T Consensus         6 ~~i~ikV~~~~g~~~i---~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~---l-~~~~Tp~~l~medgD~I   75 (79)
T 3a4r_A            6 QELRLRVQGKEKHQML---EISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFD---GTK---L-SGKELPADLGLESGDLI   75 (79)
T ss_dssp             CCEEEEEECSSTTCEE---EEEECTTSCHHHHHHHHHHHHTCTTCCCEEEET---TEE---C-CSCCCHHHHTCCTTCEE
T ss_pred             CEEEEEEEeCCCCEEE---EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCCEE
Confidence            4688888875442113   688999999999999999999999999999985   776   3 67899999999999999


Q ss_pred             EEE
Q psy13905         95 FVE   97 (248)
Q Consensus        95 hVv   97 (248)
                      ||.
T Consensus        76 dv~   78 (79)
T 3a4r_A           76 EVW   78 (79)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            985

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.28  E-value=9.5e-08  Score=81.63  Aligned_cols=53  Identities=17%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      ...++++.||.+||++|+..+||||++|+|+|.   |+.   | .|+.+|+     ++++||++=
T Consensus        14 tLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~---GK~---L-eD~~TLs-----~~STLhLvl   66 (189)
T 2xzm_9           14 IYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN---GFI---A-PNTELVT-----DDVTYYLSL   66 (189)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             EEEECCcChHHHHHHHHHHHhCcChhHEEEEec---CeE---C-CCCCccc-----CCCEEEEEE
Confidence            578999999999999999999999999999997   776   4 5778888     899999984

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.27  E-value=4e-06  Score=63.39  Aligned_cols=74  Identities=14%  Similarity=0.116  Sum_probs=63.1

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...|+|.|.+...+ ..   ..++.++.++..|+++.....|++++++||+|.   |+.   | .++.|+.+|++++|.+
T Consensus        15 ~~~i~ikV~~~~g~-~i---~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fd---G~~---l-~~~~Tp~dl~medgD~   83 (93)
T 2d07_B           15 NDHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDT   83 (93)
T ss_dssp             CCEEEEEEECTTSC-EE---EEEEETTSCHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCTTTTTCCTTEE
T ss_pred             CCeEEEEEECCCCC-EE---EEEEccCCHHHHHHHHHHHHhCCCccceEEEEC---CEE---c-CCCCCHHHcCCCCCCE
Confidence            45788888864433 13   689999999999999999999999999999986   776   3 5789999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |||+-
T Consensus        84 Idv~~   88 (93)
T 2d07_B           84 IDVFQ   88 (93)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99974

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.25  E-value=4.1e-06  Score=63.31  Aligned_cols=74  Identities=14%  Similarity=0.117  Sum_probs=63.2

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      ..|+|.|.+.... ..   ..++.++.++..|+++.....|+|++++||+|.   |+.   | .++.|+.+|++++|.+|
T Consensus         4 ~~i~ikVk~~~g~-~v---~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd---G~~---l-~~~~Tp~dl~medgD~I   72 (91)
T 2io0_B            4 DHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDTI   72 (91)
T ss_dssp             CEEEEEEECTTSC-EE---EEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET---TEE---C-CTTCCTTTTTCCTTEEE
T ss_pred             CeEEEEEECCCCC-EE---EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCCEE
Confidence            4688889874433 13   789999999999999999999999999999985   776   3 67799999999999999


Q ss_pred             EEEeC
Q psy13905         95 FVEGN   99 (248)
Q Consensus        95 hVvD~   99 (248)
                      +|+-.
T Consensus        73 dv~~~   77 (91)
T 2io0_B           73 DVFQQ   77 (91)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99864

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.16  E-value=5.6e-06  Score=64.09  Aligned_cols=74  Identities=14%  Similarity=0.116  Sum_probs=63.2

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...|+|.|.+.... ..   ..++.++.++..|+.+.....|++++++||+|.   |+.   | .++.|+.+|++++|.+
T Consensus        22 ~~~I~IkVk~~~g~-~i---~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~Fd---G~~---l-~~~~Tp~dl~medgD~   90 (104)
T 1wz0_A           22 NDHINLKVAGQDGS-VV---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDT   90 (104)
T ss_dssp             SCCEEEEEECSSSC-EE---EEEECTTSCHHHHHHHHHHHHTCCTTTSCEESS---SSB---C-CTTSCTTTTTCCTTEE
T ss_pred             CCeEEEEEECCCCC-EE---EEEEcCCChHHHHHHHHHHHhCCCcceEEEEEC---CEE---c-CCCCCHHHcCCCCCCE
Confidence            45788999864433 13   689999999999999999999999999999985   776   3 5789999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |||+-
T Consensus        91 Idv~~   95 (104)
T 1wz0_A           91 IDVFQ   95 (104)
T ss_dssp             EEECC
T ss_pred             EEEEE
Confidence            99974

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.10  E-value=1.3e-05  Score=62.27  Aligned_cols=76  Identities=9%  Similarity=0.100  Sum_probs=64.0

Q ss_pred             cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      .+....|+|.|.+ ... ..   ..++.++.++..|+++.....|++++++||+|.   |+.   | .++.|..+|++++
T Consensus        26 ~~~~~~I~IkV~~-~g~-~i---~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~Fd---G~r---l-~~~~Tp~dl~med   93 (106)
T 2eke_C           26 VKPETHINLKVSD-GSS-EI---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDMED   93 (106)
T ss_dssp             CCCCSEEEEEEEC-SSC-EE---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCTTTTTCCT
T ss_pred             CCCCCeEEEEEec-CCc-EE---EEEeCCCCHHHHHHHHHHHHhCCCcccEEEEEC---CeE---c-CCCCCHHHcCCCC
Confidence            3445678899988 332 23   688999999999999999999999999999985   776   3 5789999999999


Q ss_pred             CcEEEEEe
Q psy13905         91 EMTLFVEG   98 (248)
Q Consensus        91 G~~IhVvD   98 (248)
                      |.+|+|+-
T Consensus        94 gD~Idv~~  101 (106)
T 2eke_C           94 NDIIEAHR  101 (106)
T ss_dssp             TEEEEEEE
T ss_pred             CCEEEEEe
Confidence            99999974

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=97.99  E-value=8.3e-06  Score=63.83  Aligned_cols=76  Identities=11%  Similarity=0.099  Sum_probs=64.2

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ....|+|.|.+.... ..   ..++.++.++..|+++.....|++++++||+|.   |+.   | .++.|+.+|++++|.
T Consensus        23 ~~~~I~IkVk~~~g~-~i---~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFd---G~~---L-~~~~Tp~dl~mEDgD   91 (110)
T 2k8h_A           23 ETALVAVKVVNADGA-EM---FFRIKSRTALKKLIDTYCKKQGISRNSVRFLFD---GTP---I-DETKTPEELGMEDDD   91 (110)
T ss_dssp             CCCCEEEEEEETTSC-CE---EEEECTTSSHHHHHHHHHHHHTCCSSSCEEESS---SCB---C-CSSSHHHHHHCSSEE
T ss_pred             CCCeEEEEEECCCCC-EE---EEEECCCChHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCCCC
Confidence            345689999875433 14   799999999999999999999999999999985   776   3 577999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|+|+-.
T Consensus        92 ~Idv~~~   98 (110)
T 2k8h_A           92 VIDAMVE   98 (110)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEc
Confidence            9999864

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.54  E-value=0.00019  Score=54.63  Aligned_cols=65  Identities=14%  Similarity=0.085  Sum_probs=47.9

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      .-|.|=|..+....   ..-+.+..||..||++|+..|||||++|+|.|.   |+.+. | +++++-..|+-.
T Consensus        13 kvvHVf~~~~a~~h---~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~e---g~~l~-l-~p~~~a~~~p~T   77 (94)
T 4efo_A           13 MVIHVFSLQQMTAH---KIYIHSYNTATIFHELVYKQTKIISSNQELIYE---GRRLV-L-EPGRLAQHFPKT   77 (94)
T ss_dssp             EEEEEEETTTTEEE---EEEEETTCBHHHHHHHHHHHHCCCGGGEEEEET---TEEEC-C-CTTCBGGGSCCC
T ss_pred             eeEEEEEcccceEE---EEEeccchHHHHHHHHHHHHhCCCHHHHHHHhC---CCccc-c-CCCCccccCCCC
Confidence            33445454444335   788999999999999999999999999999987   76533 3 566666666543

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=97.44  E-value=0.00063  Score=53.56  Aligned_cols=74  Identities=14%  Similarity=0.140  Sum_probs=62.6

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...|+|.|.+...+. .   ..++.++.++.-|+.......|+++.++|+.|.   |+.   | +++.|..++++++|.+
T Consensus        38 ~~~I~LKV~~qdg~e-v---~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFD---G~r---I-~~~~TP~dL~MEDgD~  106 (115)
T 3kyd_D           38 GEYIKLKVIGQDSSE-I---HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQR---I-ADNHTPKELGMEEEDV  106 (115)
T ss_dssp             -CEEEEEEECTTSCE-E---EEEEETTSCTHHHHHHHHHHHTCCTTSEEEEET---TEE---C-CTTCCTTTTTCCTTCE
T ss_pred             CCeEEEEEEcCCCCE-E---EEEEccCChHHHHHHHHHHHhCCChhhEEEEEC---CeE---C-CCCCCHHHcCCCCCCE
Confidence            457889998754432 3   588999999999999999999999999999985   776   3 5789999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |+|.-
T Consensus       107 IdV~~  111 (115)
T 3kyd_D          107 IEVYQ  111 (115)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99974

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00047  Score=59.16  Aligned_cols=76  Identities=9%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      |....|+|.|.....  ..   ..++.++.++..|+.....+.|+|+.++|+.|.   |+.   | .++.|..++++++|
T Consensus        25 ~~~~~I~LkV~~~g~--~v---~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~Fd---G~r---I-~~~~TP~dL~MEdg   92 (200)
T 3pge_A           25 KPETHINLKVSDGSS--EI---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDMEDN   92 (200)
T ss_dssp             CCCCCEEEEEECSSC--EE---EEEECTTSCTHHHHHHHHHHHSSCGGGEEEEET---TEE---C-CTTCCTTTTTCCTT
T ss_pred             CCCCeEEEEEecCCC--EE---EEEEecCCHHHHHHHHHHHHhCCChhhEEEEEC---CEE---c-CCCCCHHHcCCCCC
Confidence            445678999964222  24   789999999999999999999999999999985   777   3 67899999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      .+|+|+-.
T Consensus        93 D~Idv~~~  100 (200)
T 3pge_A           93 DIIEAHRE  100 (200)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEec
Confidence            99999954

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.35  E-value=6.6e-05  Score=55.18  Aligned_cols=75  Identities=9%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +.|.|.|..-.+     ...++++.|+.+|+++|...+++++..|.|.+..+....+ . ..++.+|++.|+..|..|+|
T Consensus         5 m~lRvrs~~G~~-----Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l-~-~~~~~~l~~lgl~hGd~l~l   77 (80)
T 2pjh_A            5 IIIRVQSPDGVK-----RITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEI-T-ASSSKSLHLLKIKHGDLLFL   77 (80)
T ss_dssp             CCCEEECSSEEE-----ECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGS-S-SCCCCTTTTTCCCTTCCEEC
T ss_pred             EEEEEECCCCCE-----EEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcc-c-CCCCCCHHHcCCCCCCEEEE
Confidence            346666655432     3447899999999999999999999999887754331111 1 23788999999999999987


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      ..
T Consensus        78 ~~   79 (80)
T 2pjh_A           78 FP   79 (80)
T ss_dssp             --
T ss_pred             ec
Confidence            53

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00073  Score=57.89  Aligned_cols=77  Identities=9%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      |....|+|.|......  .   ..++.++.++..|+.......|+++.++|+.|.   |+.   | +++.|..+++++||
T Consensus        53 dp~e~InLKVk~dG~e--V---~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFD---GqR---I-~~ddTPeDLdMEDG  120 (207)
T 3tix_A           53 KPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYD---GIE---I-QADQTPEDLDMEDN  120 (207)
T ss_dssp             --CCEEEEEEECSSCE--E---EEEEETTSCTHHHHHHHHHHTTCCGGGSCEEET---TEE---C-CSSCCTTTTTCCTT
T ss_pred             CCCCcEEEEEecCCCE--E---EEEEccCChHHHHHHHHHHHhCCCcccEEEEEC---Cee---c-CCCCCHHHcCCCCC
Confidence            4456789999642222  4   689999999999999999999999999999984   776   3 57899999999999


Q ss_pred             cEEEEEeCC
Q psy13905         92 MTLFVEGNY  100 (248)
Q Consensus        92 ~~IhVvD~~  100 (248)
                      .+|+|.-..
T Consensus       121 DtIDV~leQ  129 (207)
T 3tix_A          121 DIIEAHREQ  129 (207)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEEEEec
Confidence            999999643

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=96.57  E-value=0.0071  Score=52.49  Aligned_cols=65  Identities=11%  Similarity=0.074  Sum_probs=55.8

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN   99 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~   99 (248)
                      ...|+...||.+|+.++-.+++|+++ ..||..+...++. ..|.+.+.+|.++++.+|+.|.|.--
T Consensus       155 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r  220 (231)
T 3jyu_A          155 SCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQ  220 (231)
T ss_dssp             EEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred             EEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence            58899999999999999999999997 7999997655444 55777789999999999998887753

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=96.43  E-value=0.023  Score=41.83  Aligned_cols=71  Identities=13%  Similarity=0.086  Sum_probs=60.3

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      .|++.+.|+.+.    ++..+++++.||.+|=.---..-|||++ ..+|.|-   |..    .+++.++.+|.+.||..|
T Consensus         9 ~~~~~~~~~~~~----dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFD---GdR----Ldp~~tp~DlemeD~D~I   77 (82)
T 3goe_A            9 LITLLLRSSKSE----DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFE---GEW----LDPNDQVQSTELEDEDQV   77 (82)
T ss_dssp             EEEEEEEESSSC----CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEET---TEE----CCTTSBGGGSSCCTTCEE
T ss_pred             HHHHhhhccCCC----CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEc---Ccc----cCccCChhhhCCcCCcee
Confidence            567777776543    3489999999999999999999999999 9999874   766    478999999999999998


Q ss_pred             EEE
Q psy13905         95 FVE   97 (248)
Q Consensus        95 hVv   97 (248)
                      -|+
T Consensus        78 Dvm   80 (82)
T 3goe_A           78 SVV   80 (82)
T ss_dssp             EEE
T ss_pred             eee
Confidence            875

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=96.23  E-value=0.0078  Score=51.70  Aligned_cols=64  Identities=8%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCC-CeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSS-NMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~-~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      ...|+...||.+|+.++-..++|+++ .+||..+...++. ..|++++.+|.++++.+|+.|.|.-
T Consensus       143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~-~~L~~~~~tl~~~~l~~~Q~illE~  207 (217)
T 4a3p_A          143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTF-EPLNKPDSTIQDAGLYQGQVLVIEQ  207 (217)
T ss_dssp             EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEE-EECCCTTSBHHHHTCCTTCEEEEEE
T ss_pred             EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCe-eecCCCCCCHHHhCCCCCCEEEEEE
Confidence            58899999999999999999999997 7999987654443 5677778999999999999888764

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=96.01  E-value=0.0011  Score=57.50  Aligned_cols=78  Identities=8%  Similarity=0.086  Sum_probs=0.0

Q ss_pred             ecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905         10 IMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        10 ~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      +++....|+|.|+.....  .   ..++.++.++.-|++......|++++++|+.|.   |+.   + .++.|..+++++
T Consensus        15 ~~~p~e~InLKV~qdGse--V---~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFD---GqR---I-~dddTPadL~ME   82 (227)
T 3v7o_A           15 EVKPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDME   82 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCeEEEEEeCCCCE--E---EEEEccCChHHHHHHHHHHHhCCCccceEEEEC---CEe---c-CCCCCHHHcCCC
Confidence            445566788888332222  4   688999999999999999999999999999986   776   3 578999999999


Q ss_pred             CCcEEEEEeC
Q psy13905         90 NEMTLFVEGN   99 (248)
Q Consensus        90 dG~~IhVvD~   99 (248)
                      ||++|+|+-.
T Consensus        83 DGDtIDV~le   92 (227)
T 3v7o_A           83 DNDIIEAHRE   92 (227)
T ss_dssp             ----------
T ss_pred             CCCEEEEEec
Confidence            9999999854

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=95.83  E-value=0.016  Score=42.81  Aligned_cols=59  Identities=10%  Similarity=-0.035  Sum_probs=45.5

Q ss_pred             ceEEecCCCCHHHHHHHHHHHHCCCCCC---eEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         33 NLKKLKLNNTIGELKQKLELLTGQMSSN---MTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        33 ~E~r~~~~~TI~eLK~KLe~~tGipp~~---mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +..|+|..+|+.+|++-|-...+++...   =.|.+.++ + .   +..+.+.|.+|++.+|+.|.|
T Consensus        19 ~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK-~-~---~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           19 FDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNK-D-K---VFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGG-T-E---EEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecC-C-E---EEcCCCEEeeCCcCCCCEEEE
Confidence            3899999999999999999999998631   12333311 1 1   346889999999999999876

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=95.74  E-value=0.034  Score=47.40  Aligned_cols=76  Identities=8%  Similarity=0.063  Sum_probs=63.5

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ....|+|.|.+....  .   ..++.++.++.-|++......|+|++++|+.|.   |+.    ..++.+.....++++.
T Consensus        18 ~~~~i~ikv~~~~~~--v---~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fd---G~~----i~~~~Tpk~L~~ed~d   85 (209)
T 3uf8_A           18 PETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR----IQADQTPEDLDMEDND   85 (209)
T ss_dssp             CCSEEEEEEECSSCE--E---EEEEETTSCTHHHHHHHHHHHTCCGGGCEEEET---TEE----CCTTCCTTTTTCCTTE
T ss_pred             CCCcEEEEEEcCCCE--E---EEEEeeCCHHHHHHHHHHHhhCCChheEEEEEC---CEe----ccCCCChHHhhhcccc
Confidence            456788888863222  4   689999999999999999999999999999986   776    3578889999999999


Q ss_pred             EEEEEeCC
Q psy13905         93 TLFVEGNY  100 (248)
Q Consensus        93 ~IhVvD~~  100 (248)
                      .|+|.-..
T Consensus        86 ~I~~~~eq   93 (209)
T 3uf8_A           86 IIEAHREQ   93 (209)
T ss_dssp             EEEEECSC
T ss_pred             cchhhccc
Confidence            99998643

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=95.45  E-value=0.057  Score=40.98  Aligned_cols=77  Identities=12%  Similarity=0.096  Sum_probs=62.9

Q ss_pred             cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      .+....|+|.|.+...+...   ..++.++.++.-|........|++++..|+.|.   |..   + .++.|..+++++|
T Consensus        20 ~~~~~~I~LkV~~~dg~~~v---~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FD---G~r---I-~~~~TP~dLdMED   89 (97)
T 2jxx_A           20 TETSQQLQLRVQGKEKHQTL---EVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFD---GTK---L-SGRELPADLGMES   89 (97)
T ss_dssp             CCSCSEEEEEEEESSSSCEE---EEEEETTSCHHHHHHHHHHHTTCSSSCCEEEET---TEE---C-CSCSCHHHHTCCT
T ss_pred             CCCCCeEEEEEEcCCCCEEE---EEEECCCChHHHHHHHHHHHHCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCC
Confidence            34566889999875543113   588899999999999999999999999999884   776   3 5778999999999


Q ss_pred             CcEEEEE
Q psy13905         91 EMTLFVE   97 (248)
Q Consensus        91 G~~IhVv   97 (248)
                      |.+|-|.
T Consensus        90 gD~IDv~   96 (97)
T 2jxx_A           90 GDLIEVW   96 (97)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEe
Confidence            9999874

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.43  E-value=0.037  Score=41.52  Aligned_cols=79  Identities=13%  Similarity=0.151  Sum_probs=55.3

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCC-eEEEEEeCCCceeeccCCCC---cccCCCC--
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSN-MTISLYNRNHDLVSHLSDNS---MLLGQYP--   87 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~-mrL~l~~~~g~~i~~L~~d~---~~L~~y~--   87 (248)
                      .+.|+|.+..+..-  .   -.++++++|..+|++||..+.++++.+ ..|.+.|.+|..+. +..|.   .-|..|.  
T Consensus         4 ~~~vkvK~~~~gdi--~---~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it-isSd~EL~eAl~l~~~n   77 (89)
T 1vd2_A            4 GSQVRVKAYYRGDI--M---ITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT-VSSQLELEEAFRLYELN   77 (89)
T ss_dssp             SSCEEEEEESSSCE--E---EEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE-CCSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEEEeCCeE--E---EEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc-ccCHHHHHHHHHHHHcc
Confidence            44677777766543  3   588999999999999999999998655 79999998888743 32222   2233333  


Q ss_pred             CCCCcEEEEEe
Q psy13905         88 VENEMTLFVEG   98 (248)
Q Consensus        88 i~dG~~IhVvD   98 (248)
                      =...-+|||..
T Consensus        78 ~~~~l~ihvf~   88 (89)
T 1vd2_A           78 KDSELLIHVFP   88 (89)
T ss_dssp             SCCCEEEEEEE
T ss_pred             CCCCEEEEEcc
Confidence            34445888854

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.96  E-value=0.14  Score=41.32  Aligned_cols=66  Identities=15%  Similarity=0.082  Sum_probs=46.7

Q ss_pred             eEEecCCCCHHHHHHHHHHHH--CC------CCCCeEEEEEeCCCceeeccCCCC-----------cccCCCCCCCCcEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLT--GQ------MSSNMTISLYNRNHDLVSHLSDNS-----------MLLGQYPVENEMTL   94 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~t--Gi------pp~~mrL~l~~~~g~~i~~L~~d~-----------~~L~~y~i~dG~~I   94 (248)
                      ..++-.-.||.|+|+||-..+  |+      .+.++.|..+.+.+..+.--+.|.           .+|..|+|.||++|
T Consensus        44 ~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l  123 (138)
T 2r2o_A           44 PVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATV  123 (138)
T ss_dssp             EEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEE
T ss_pred             eEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEE
Confidence            577778899999999998774  44      355778888755433211112222           28999999999999


Q ss_pred             EEEeC
Q psy13905         95 FVEGN   99 (248)
Q Consensus        95 hVvD~   99 (248)
                      -++-.
T Consensus       124 ~l~~~  128 (138)
T 2r2o_A          124 ALVPC  128 (138)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98853

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=94.90  E-value=0.24  Score=35.82  Aligned_cols=79  Identities=14%  Similarity=0.037  Sum_probs=59.6

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +.+..+|.|..+.-++ .   .++|..+.||.+|..-+.. .|.++...+|.-..+ .+.+. ..+.+.+|.+.|+.++.
T Consensus         4 ~~~~~~i~iRlpdG~r-~---~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fP-rk~l~-~~d~~~TL~e~gL~p~a   76 (84)
T 3qx1_A            4 MEPVSKLRIRTPSGEF-L---ERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFP-RRDVT-QLDPNKSLLEVKLFPQE   76 (84)
T ss_dssp             CCCEEEEEEECTTSCE-E---EEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSS-CCBGG-GSCTTSBTTTTTCCSEE
T ss_pred             CCCeEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCC-CCCCc-CCCCCCCHHHCCCCCCC
Confidence            4567889999765442 4   7999999999999999998 788877777763222 23321 23667899999999999


Q ss_pred             EEEEEe
Q psy13905         93 TLFVEG   98 (248)
Q Consensus        93 ~IhVvD   98 (248)
                      .|+|..
T Consensus        77 ~L~ve~   82 (84)
T 3qx1_A           77 TLFLEA   82 (84)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999875

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=94.55  E-value=0.0063  Score=56.47  Aligned_cols=77  Identities=8%  Similarity=0.098  Sum_probs=0.0

Q ss_pred             cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      +.....|+|.|.+....  .   ..++.++.++..|++....+.|++++++|+.|.   |+.   + .++.|..++++++
T Consensus        16 ~~~~~~I~LKV~~~g~~--v---~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFd---G~r---I-~~~~TP~~L~MED   83 (360)
T 3ix6_A           16 VKPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDMED   83 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEEEEecCCcE--E---EEEEecCChHHHHHHHHHHHhCCCcceEEEEEC---CeE---C-CCCCChHHcCCCc
Confidence            34556788888863322  3   688999999999999999999999999999986   776   3 5779999999999


Q ss_pred             CcEEEEEeC
Q psy13905         91 EMTLFVEGN   99 (248)
Q Consensus        91 G~~IhVvD~   99 (248)
                      |.+|+|.-.
T Consensus        84 gD~Idv~~~   92 (360)
T 3ix6_A           84 NDIIEAHRE   92 (360)
T ss_dssp             ---------
T ss_pred             cchhhhhhc
Confidence            999999864

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=94.48  E-value=0.066  Score=39.63  Aligned_cols=49  Identities=8%  Similarity=0.043  Sum_probs=40.8

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCc
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD   71 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~   71 (248)
                      +.|.|....+   .   -+|++++++..+|.+||....+++++.++|+|++.++.
T Consensus         6 ~~VKV~~~~t---v---airvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~   54 (83)
T 1oey_A            6 YTLKVHYKYT---V---VMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSN   54 (83)
T ss_dssp             EEEEEESSSE---E---EEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCS
T ss_pred             EEEEEEEEEE---E---EEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCC
Confidence            5666665522   3   69999999999999999999999999999999985444

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=93.15  E-value=0.016  Score=53.44  Aligned_cols=76  Identities=8%  Similarity=0.093  Sum_probs=0.0

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      +....|+|.|......  .   ..++.++.++.-|++....+.|+++.++++.|.   |+.   + .++.|..++++++|
T Consensus        26 ~~~~~i~lkv~~~~~~--~---~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~---G~~---i-~~~~Tp~~l~med~   93 (389)
T 4da1_A           26 KPETHINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQAPEDLDMEDN   93 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCcEEEEEecCCcE--E---EEEECCCChHHHHHHHHHHHhCCCcceEEEEEC---CEE---c-CCCCCHHHcCCCCC
Confidence            4456778888752222  3   689999999999999999999999999999987   776   3 57899999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      .+|+|.-.
T Consensus        94 d~i~~~~~  101 (389)
T 4da1_A           94 DIIEAHRE  101 (389)
T ss_dssp             --------
T ss_pred             CEeeeeec
Confidence            99998853

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=93.07  E-value=0.46  Score=37.78  Aligned_cols=65  Identities=12%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             eEEecCCCCHHHHHHHHHHHH--CCC------CCCeEEEEEeCCCceeeccCC-C-----------CcccCCCCCCCCcE
Q psy13905         34 LKKLKLNNTIGELKQKLELLT--GQM------SSNMTISLYNRNHDLVSHLSD-N-----------SMLLGQYPVENEMT   93 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~t--Gip------p~~mrL~l~~~~g~~i~~L~~-d-----------~~~L~~y~i~dG~~   93 (248)
                      ..++-.-.||.|+|+||-..+  |+|      +..|.|.++.+....+. |.+ |           -.||+.|++.||++
T Consensus        20 ~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~i-L~D~D~ts~~~~~~krLNTL~HY~V~dgat   98 (127)
T 3h6n_A           20 SVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYI-LRDLDDTSVVEDGRKKLNTLAHYKIPEGAS   98 (127)
T ss_dssp             EEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEE-CCSSSTTSCEETTEECCCBTTTTTCCTTCE
T ss_pred             eeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceE-eecCCCcceecCceeEeccccccCCCCCCE
Confidence            566667899999999996652  444      46899999754332211 211 1           14899999999999


Q ss_pred             EEEEeC
Q psy13905         94 LFVEGN   99 (248)
Q Consensus        94 IhVvD~   99 (248)
                      |-++-.
T Consensus        99 v~l~~~  104 (127)
T 3h6n_A           99 LAMSLI  104 (127)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            998853

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=92.38  E-value=0.12  Score=37.57  Aligned_cols=46  Identities=15%  Similarity=0.071  Sum_probs=38.6

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCC-----CCCeEEEEEeCCCceeeccCCC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQM-----SSNMTISLYNRNHDLVSHLSDN   79 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGip-----p~~mrL~l~~~~g~~i~~L~~d   79 (248)
                      .+++++++|..+|..||..+.+..     ....+|.|++.+|..+.-.+++
T Consensus         5 ~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sdd   55 (77)
T 1pqs_A            5 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDE   55 (77)
T ss_dssp             EEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTT
T ss_pred             EEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHH
Confidence            588999999999999999999986     5778999999889875544333

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=91.82  E-value=0.73  Score=36.10  Aligned_cols=82  Identities=15%  Similarity=0.121  Sum_probs=61.0

Q ss_pred             ecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905         10 IMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        10 ~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      +-+....++|.|.-+.-.+ .   +++|..+.||.+|..-|... |.++..-.|.-..+ .+.+ ...+.+.+|.+.++.
T Consensus        37 ~d~~~~~t~IqIRlPdG~r-l---~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fP-rk~l-~~~d~~~TL~e~gL~  109 (124)
T 1wj4_A           37 IDVNGPKAQLMLRYPDGKR-E---QITLPEQAKLLALVKHVQSK-GYPNERFELLTNFP-RRKL-SHLDYDITLQEAGLC  109 (124)
T ss_dssp             CCCSSCEEEEEEECTTSCE-E---EEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSS-CCEE-TSSCSSSCTTTTTCC
T ss_pred             cCCCCCcEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCC-CcCC-ccCCCCCCHHHCCCC
Confidence            4456678899999655432 4   79999999999999999887 87776666653222 2331 114568999999999


Q ss_pred             CCcEEEEEe
Q psy13905         90 NEMTLFVEG   98 (248)
Q Consensus        90 dG~~IhVvD   98 (248)
                      +...|+|..
T Consensus       110 psa~Liv~~  118 (124)
T 1wj4_A          110 PQETVFVQE  118 (124)
T ss_dssp             SSBCCEEEE
T ss_pred             CceEEEEEE
Confidence            999998886

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=91.62  E-value=0.88  Score=34.70  Aligned_cols=82  Identities=7%  Similarity=-0.001  Sum_probs=60.1

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      ....++|.|.-+.-++ .   +++|+.+.||.+|.+-|....|.+...-.|.-..+ .+. ....+.+.+|.+.++.+..
T Consensus        10 ~~~~t~IqIRlpdG~r-l---~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fP-rk~-l~~~d~~~TL~elgL~psa   83 (109)
T 2dzk_A           10 RSTIARIQFRLPDGSS-F---TNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFP-RRE-FTREDYKRRLLDLELAPSA   83 (109)
T ss_dssp             CSCCEEEEEECSSSCE-E---EEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSS-CCB-CCTTTTTSBTGGGTCSSEE
T ss_pred             CCCcEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCC-CcC-CcccccCCCHHHCCCCCce
Confidence            3457889999654432 4   79999999999999999999887766666553222 222 1122567999999999999


Q ss_pred             EEEEEeCC
Q psy13905         93 TLFVEGNY  100 (248)
Q Consensus        93 ~IhVvD~~  100 (248)
                      .|+|....
T Consensus        84 ~L~v~~~~   91 (109)
T 2dzk_A           84 SVVLLPAG   91 (109)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEECc
Confidence            99999754

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=91.52  E-value=0.29  Score=38.37  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             eEEecCCCCHHHHHHHHHHHH--CCC------CCCeEEEEEeCCCceeeccCCCC-----------cccCCCCCCCCcEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLT--GQM------SSNMTISLYNRNHDLVSHLSDNS-----------MLLGQYPVENEMTL   94 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~t--Gip------p~~mrL~l~~~~g~~i~~L~~d~-----------~~L~~y~i~dG~~I   94 (248)
                      ..++-.-.||.|+|+||-..+  |+|      +..+.|.++.+.+..+.--+.|.           .||+.|++.+|++|
T Consensus        30 ~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl  109 (117)
T 4e74_A           30 PVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVV  109 (117)
T ss_dssp             EEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEE
T ss_pred             EeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEE
Confidence            566777899999999986552  554      45789999865333211011111           38899999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      -++-
T Consensus       110 ~l~~  113 (117)
T 4e74_A          110 ALVS  113 (117)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8864

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=91.21  E-value=0.49  Score=37.57  Aligned_cols=65  Identities=18%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             eEEecCCCCHHHHHHHHHHH----HCCC----CCCeEEEEEeCCCcee-eccC------CC----CcccCCCCCCCCcEE
Q psy13905         34 LKKLKLNNTIGELKQKLELL----TGQM----SSNMTISLYNRNHDLV-SHLS------DN----SMLLGQYPVENEMTL   94 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~----tGip----p~~mrL~l~~~~g~~i-~~L~------~d----~~~L~~y~i~dG~~I   94 (248)
                      ..++-.-.||.|+|+||-..    .|+|    +.+|.|.++.+.+..+ ...+      .+    -.||..|++.||++|
T Consensus        42 ~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatl  121 (126)
T 3kuz_A           42 SVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTI  121 (126)
T ss_dssp             EEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEE
T ss_pred             EeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCCEE
Confidence            46666789999999998543    3776    4578888875443221 1110      11    147889999999999


Q ss_pred             EEEe
Q psy13905         95 FVEG   98 (248)
Q Consensus        95 hVvD   98 (248)
                      -++.
T Consensus       122 al~k  125 (126)
T 3kuz_A          122 KVFK  125 (126)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8763

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=91.06  E-value=1.1  Score=34.75  Aligned_cols=63  Identities=24%  Similarity=0.267  Sum_probs=41.4

Q ss_pred             eEEecCCCCHHHHHHHHHHHH--CCC------CCCeEEEEEeCCCceeeccCC-C-----------CcccCCCCCCCCcE
Q psy13905         34 LKKLKLNNTIGELKQKLELLT--GQM------SSNMTISLYNRNHDLVSHLSD-N-----------SMLLGQYPVENEMT   93 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~t--Gip------p~~mrL~l~~~~g~~i~~L~~-d-----------~~~L~~y~i~dG~~   93 (248)
                      ..++-.-.||.|+|+||-..+  |+|      +..|.|.++.+.+..+  |.+ |           -.||+.|++.||++
T Consensus        27 ~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~i--L~D~D~ts~~~~~wkrLNTL~HY~V~dgat  104 (111)
T 4e71_A           27 PVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQI--LSDLDLTSQREGRWKRVNTLMHYNVRDGAT  104 (111)
T ss_dssp             EEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEE--CCSSCTTSCC---CCCCCBHHHHTCCTTCE
T ss_pred             eeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCcc--ccccCccceecCcceEecchhhcCCCCCCE
Confidence            577778899999999996542  444      4578899864422221  222 1           14888999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |-++-
T Consensus       105 l~l~~  109 (111)
T 4e71_A          105 LILSK  109 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98763

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=90.55  E-value=0.23  Score=39.48  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN   67 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~   67 (248)
                      ..|+..++|+.+||..+....|+|+++|||+...
T Consensus        59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~   92 (130)
T 2kvr_A           59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ   92 (130)
T ss_dssp             EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred             eEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence            4788999999999999999999999999999864

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=90.33  E-value=0.35  Score=36.82  Aligned_cols=41  Identities=10%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCC-----CCeEEEEEeCCCceee
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMS-----SNMTISLYNRNHDLVS   74 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp-----~~mrL~l~~~~g~~i~   74 (248)
                      ...++++++..+|..||..+.++++     ...+|.|+|.+|..+.
T Consensus        26 ~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vt   71 (98)
T 1q1o_A           26 TLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVV   71 (98)
T ss_dssp             EEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEE
T ss_pred             EEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEE
Confidence            5889999999999999999999763     2369999999988754

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=87.91  E-value=0.82  Score=41.47  Aligned_cols=63  Identities=10%  Similarity=0.042  Sum_probs=49.7

Q ss_pred             eEEecCCCCHHHHHHHHHHHHC----CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         34 LKKLKLNNTIGELKQKLELLTG----QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tG----ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      ...|+|++||.+.+.+|.....    .++++=-|.+.+.+++.-..| .+.++|..|++++|..|+..
T Consensus        16 ~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl-~~~~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A           16 TMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWL-EAGKALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             EEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEEC-CTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEec-cCCCCHHHhCCCCCceeecc
Confidence            5789999999999999866653    367777999877665554556 56779999999999877744

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=87.60  E-value=1.8  Score=32.80  Aligned_cols=78  Identities=13%  Similarity=0.038  Sum_probs=57.9

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccC-CCCcccCCCCCCCCc
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLS-DNSMLLGQYPVENEM   92 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~-~d~~~L~~y~i~dG~   92 (248)
                      ...++|.|..+.-++ .   .+||..+.||.+|..=|... |..+..-+|.-..+ .+.   +. +.+.+|.+.|+.+..
T Consensus        21 ~~~~~IqiRlpdG~r-~---~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fP-rk~---l~~d~~~TL~e~gL~p~a   91 (109)
T 2cr5_A           21 EEVVTVALRCPNGRV-L---RRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFP-RRA---LEVEGGSSLEDIGITVDT   91 (109)
T ss_dssp             SSEEEEEEECTTSCE-E---EEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSS-CCB---CCCCSSCBHHHHTCSSCE
T ss_pred             CCcEEEEEECCCCCE-E---EEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCC-CcC---CCCCCCCCHHHcCCCCCe
Confidence            568899999665443 4   79999999999999999865 55555556543222 222   33 568999999999999


Q ss_pred             EEEEEeCC
Q psy13905         93 TLFVEGNY  100 (248)
Q Consensus        93 ~IhVvD~~  100 (248)
                      .|+|....
T Consensus        92 ~L~Ve~~~   99 (109)
T 2cr5_A           92 VLNVEEKE   99 (109)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEeCC
Confidence            99998754

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=86.77  E-value=1.8  Score=32.71  Aligned_cols=73  Identities=10%  Similarity=0.005  Sum_probs=58.1

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...|+|.|......  .   ..++-.+..+.-|..-.....|+++++.|+.|.   |..   + .++.|-.+.++++|.+
T Consensus        19 ~~~IniKV~~~g~e--v---~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfD---G~r---I-~~~~TP~~L~meD~Di   86 (95)
T 2l76_A           19 PRLFPLKIRCRADL--V---RLPLRMSEPLQSVVDHMATHLGVSPSRILLLFG---ETE---L-SPTATPRTLKLGVADI   86 (95)
T ss_dssp             CCCEEEEEECSSSE--E---EEEECSSSCTHHHHHHHHHHHTSCGGGEEEEET---TEE---C-CTTSCHHHHTCCSSCE
T ss_pred             CCeEEEEEEcCCcE--E---EEEEecCChHHHHHHHHHhhcCCChhhEEEEEC---CcC---C-CCCCCHhHcCCCCCCE
Confidence            34688999853221  2   467788999999999999999999999998875   665   2 5777888889999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      |-|.-
T Consensus        87 ID~~~   91 (95)
T 2l76_A           87 IDCVV   91 (95)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98865

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=81.55  E-value=1.8  Score=34.24  Aligned_cols=77  Identities=14%  Similarity=0.133  Sum_probs=50.9

Q ss_pred             EEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCC-eEEEEEeCCC-------------------------c-
Q psy13905         19 LYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSN-MTISLYNRNH-------------------------D-   71 (248)
Q Consensus        19 v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~-mrL~l~~~~g-------------------------~-   71 (248)
                      |.|.-..... -   ..+++.+.||.+++.-|-...||++.. =-|.......                         + 
T Consensus        14 LkV~llDg~~-k---tl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~   89 (128)
T 2kc2_A           14 LKIRMLDGTV-K---TIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ   89 (128)
T ss_dssp             EEEECTTSCE-E---EEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred             EEEEcCCCCE-E---EEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence            5566443331 3   688999999999999999999999541 1222111100                         0 


Q ss_pred             ------eeeccCCCCcccCCCCCCCCcEEEEEeCC
Q psy13905         72 ------LVSHLSDNSMLLGQYPVENEMTLFVEGNY  100 (248)
Q Consensus        72 ------~i~~L~~d~~~L~~y~i~dG~~IhVvD~~  100 (248)
                            .+.+| +++++|..+||.++.+|.+--..
T Consensus        90 kL~~dd~~~WL-D~srtL~EQGI~e~~tllLRrKf  123 (128)
T 2kc2_A           90 KLHTDDELNWL-DHGRTLREQGVEEHETLLLRRKF  123 (128)
T ss_dssp             SCCCSSSEEEE-CSSSCHHHHTCCTTSEEEEEESS
T ss_pred             HhcccCCCCcc-cCCCcHHHcCCCCCCEEEEEEEE
Confidence                  01334 78899999999999988775543

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=80.73  E-value=6.8  Score=28.90  Aligned_cols=46  Identities=20%  Similarity=0.125  Sum_probs=35.2

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEe
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYN   67 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~   67 (248)
                      +.++|.+-....-  .   -+|+|++++..+||.||..+..+  +.+.|.++.
T Consensus        11 ~~~KVK~yy~DDI--i---AIrvP~di~~~~L~dKi~~RLk~--~~~~l~~yk   56 (85)
T 1ip9_A           11 KTTKIKFYYKDDI--F---ALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKL   56 (85)
T ss_dssp             CCEEEEECBTTCC--E---EEEECSCCCHHHHHHHHHHHHTS--SCEEEEECC
T ss_pred             CceEEEEEecCcE--E---EEECCCCCCHHHHHHHHHHHhcc--cceEEEEec
Confidence            4566666655433  3   69999999999999999999999  466666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1tova_	98	b.34.10.1 (A:) Cytoskeleton-associated protein F53	4e-35
d1whga_	113	b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1	1e-33
d2cp6a1	160	b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [	1e-33
d1whha_	102	b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR	1e-32
d1ixda_	104	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	2e-31
d2coza1	109	b.34.10.1 (A:8-116) Centrosome-associated protein	3e-31
d1whka_	91	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	7e-29
d1whja_	102	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	2e-28
d2cp0a1	83	b.34.10.1 (A:7-89) CLIP170-related 59kda protein C	2e-28
d2hqha1	72	b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapien	2e-28
d2e3ia1	71	b.34.10.1 (A:58-128) Restin {Human (Homo sapiens)	4e-28
d2e3ha1	71	b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapien	2e-27
d2cowa1	88	b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Hu	3e-27
d1whla_	95	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	5e-26
d1whma_	92	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	5e-24
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-11
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	4e-11
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	5e-07
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	5e-04

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  118 bits (298), Expect = 4e-35
 Identities = 48/100 (48%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 146 ENNEEKDKCLEENILKDIEVGKRCKINDSD--VRFGTVMFVGETKFSSGVWVGVKLDEPF 203
           EN  +K   L E   K+I VG RC++       R G V +VG TKF  GVWVGVK DEP 
Sbjct: 1   ENESDK---LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPV 57

Query: 204 GKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVLDPFD 243
           GKN+G+V  V+YF+C+  YG FV+P  + +GDFP L   +
Sbjct: 58  GKNDGSVAGVRYFDCDPKYGGFVRPVDVKVGDFPELSIDE 97

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (289), Expect = 1e-33
 Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 7/105 (6%)

Query: 135 EERLRREALLKENNEEKDKCLEENILKDIEVGKRCKINDSD--VRFGTVMFVGETKFSSG 192
           E R ++EA   +   E     E+     I VG RC++   D  +R GTVM+VG T F  G
Sbjct: 10  ELRAQQEAEAAQRLSE-----EKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPG 64

Query: 193 VWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFP 237
            WVGV+ DEP GKN+G+V   +YFEC+  YG FVKP  +T+GD  
Sbjct: 65  YWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVGDSG 109

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 1e-33
 Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
           +++++G R  +  +  + G V F+GET F+ G W GV+LDEP GKN+G V   +YF+C+ 
Sbjct: 30  RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP 87

Query: 221 NYGMFVKPGRLTIGDFPVLDP 241
            YG+F    ++T   FP   P
Sbjct: 88  KYGLFAPVHKVTKIGFPSTTP 108

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  112 bits (282), Expect = 1e-32
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 155 LEENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVK 214
           L++      EVG +  +     + G V F G+T F+ G W G++LD+P GK++G+V  V+
Sbjct: 18  LQQREGAKAEVGDQVLVAGQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVR 75

Query: 215 YFECEENYGMFVKPGRLT-IGDFP 237
           YF C   +G+F    R+  IG  P
Sbjct: 76  YFTCAPRHGVFAPASRIQRIGSGP 99

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 2e-31
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKL-DEPFGKNNGTVKDVKYFECE 219
             +EVG   ++ ++   +G + ++G+    + V  G++L DE  G  +GT +  +YF C 
Sbjct: 16  HGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA 75

Query: 220 ENYGMFVKPGRLTIG-DFPVLDP 241
               +FVK         F  L P
Sbjct: 76  LKKALFVKLKSCRPDSRFASLQP 98

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 3e-31
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECE 219
           L D  +G R  I +  V+ G + F GET F+ G W GV+LD+P G NNGT   + YFEC+
Sbjct: 22  LFDFHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK 79

Query: 220 ENYGMFVKPGRLTIGDFPVLDPFDELDE 247
           E +G+F  P +++       D  D  ++
Sbjct: 80  EKHGIFAPPQKISHIPENFDDYVDINED 107

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (256), Expect = 7e-29
 Identities = 29/71 (40%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 162 DIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEEN 221
            +  G +  +  S+    TV +VG T F+SG+W+G++L    GKN+G V D +YF C+ N
Sbjct: 12  KLHEGSQVLLTSSN-EMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPN 70

Query: 222 YGMFVKPGRLT 232
           YG+ V+P R+T
Sbjct: 71  YGVLVRPSRVT 81

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 2e-28
 Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 3/78 (3%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
             +++G R  I     + GT+ F G T+F+SG W G++LDEP GKNNG+V  V+YF+C  
Sbjct: 23  LGLKLGDRVVIAGQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAP 80

Query: 221 NYGMFVKPGRLT-IGDFP 237
            YG+F    +++ + D  
Sbjct: 81  KYGIFAPLSKISKLKDSG 98

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (252), Expect = 2e-28
 Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 2/72 (2%)

Query: 161 KDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEE 220
             + +G R  ++    + GT+ F G T+F+SG WVGV+LDEP GKN+G+V  V+YF C  
Sbjct: 9   LGLRLGDRVLLDGQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP 66

Query: 221 NYGMFVKPGRLT 232
             G+F    +++
Sbjct: 67  KQGLFASVSKIS 78

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 2e-28
 Identities = 33/71 (46%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
           + VG R ++     R GTV +VG T F++G WVGV LDE  GKN+GTV+  KYF C+E +
Sbjct: 2   LRVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGH 60

Query: 223 GMFVKPGRLTI 233
           G+FV+  ++ +
Sbjct: 61  GIFVRQSQIQV 71

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 4e-28
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)

Query: 164 EVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYG 223
            VG+R  +N +  + G + F+GET+F+ G W G+ LDEP GKN+G+V  V+YF+CE   G
Sbjct: 2   RVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKG 59

Query: 224 MFVKPGRLT 232
           +F +P +LT
Sbjct: 60  IFTRPSKLT 68

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (245), Expect = 2e-27
 Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENY 222
           +++G R  +  +  + G V F+GET F+ G W GV+LDEP GKN+G V   +YF+C+  Y
Sbjct: 1   LKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKY 58

Query: 223 GMFVKPGRLT 232
           G+F    ++T
Sbjct: 59  GLFAPVHKVT 68

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.3 bits (245), Expect = 3e-27
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 156 EENILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKY 215
            + + + +  G+   +     + G V +VG   F  G WVGV+LD P GKN+G++   +Y
Sbjct: 11  ADEVPEWLREGEFVTVGAH--KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQY 68

Query: 216 FECEENYGMFVKPGRLT 232
           F C   YG+ V+P R+ 
Sbjct: 69  FRCNPGYGLLVRPSRVR 85

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (237), Expect = 5e-26
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 162 DIEVGKRCKINDS---DVRFGTVMFVGETKF---SSGVWVGVKLDE---PFGKNNGTVKD 212
            I+VG   K+      +   G V F G        SG++ GV+L E     G  +G  + 
Sbjct: 7   GIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQG 66

Query: 213 VKYFECEENYGMFVKPGRLTIGDFP 237
            + F+C+E+ G+FV   +L + +  
Sbjct: 67  KQLFQCDEDCGVFVALDKLELIESG 91

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (224), Expect = 5e-24
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 162 DIEVGKRCKINDSD-VRFGTVMFVG--ETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFEC 218
            +E+  R  +   + +  GTV+F      K S G +VGV +D P G  +G    V+    
Sbjct: 9   PLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSF 68

Query: 219 E-ENYGMFVKPGRLT 232
                 + +    + 
Sbjct: 69  ACVESTILLHINDII 83

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL 72
          G   V ++I++S +   S    K+   + TI E K KLEL+ G  +S M + LY  +   
Sbjct: 4  GSSGVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKF 60

Query: 73 VSHLSDNSMLLGQYPVENEMTLFV 96
           S L     LLG YPV++   + V
Sbjct: 61 YSKLDQEDALLGSYPVDDGCRIHV 84

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHL 76
           +L IT +          KK     ++ +LK+KLEL+ G    +M I L++ +  L   L
Sbjct: 5  YDLEITTNATDFPM---EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGEL 61

Query: 77 SDNSMLLGQYPVENEMTLFV 96
          +D +  L    V +   +  
Sbjct: 62 TDGAKSLKDLGVRDGYRIHA 81

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (105), Expect = 5e-07
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHD-LVS 74
          T+++  +N  ++       K+L  + T+ ++K  L  L     S + +S  +        
Sbjct: 11 TLKIKCSNQPERQILE---KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67

Query: 75 HLSDNSMLLGQYPVENEMTLFVE 97
           L ++   L  Y VEN   L V 
Sbjct: 68 ELENDLQPLQFYSVENGDCLLVR 90

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 21 ITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNS 80
          +T+S +KH+  +  ++      + +L Q +E + G   S   +    +       L +  
Sbjct: 6  VTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGK------SLKEME 59

Query: 81 MLLGQYPVENEMTLFVEG 98
            L    +++   + + G
Sbjct: 60 TPLSALGIQDGCRVMLIG 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1tova_	98	Cytoskeleton-associated protein F53F4.3 {Caenorhab	100.0
d1whga_	113	Tubulin-specific chaperone B (SKAP1) {Mouse (Mus m	99.97
d2coza1	109	Centrosome-associated protein 350 {Human (Homo sap	99.96
d2hqha1	72	Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2e3ia1	71	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2e3ha1	71	CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2cp0a1	83	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.95
d1whha_	102	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.95
d2cowa1	88	Kinesin-like protein kif13b {Human (Homo sapiens)	99.95
d1ixda_	104	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.95
d1whka_	91	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.95
d1whja_	102	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.94
d2cp6a1	160	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1whla_	95	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.93
d1whma_	92	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.91
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.88
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.86
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.62
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.46
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.37
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.35
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.35
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.35
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.33
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.33
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.33
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.31
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.3
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.26
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.25
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.24
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.24
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.24
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.23
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.23
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.21
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.2
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.2
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.19
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.18
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.14
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.1
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.07
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.04
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.04
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.03
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.02
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	98.81
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	98.76
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.31
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.89
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	94.81
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	94.31
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	92.44
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.94
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	88.24
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	84.99
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	83.79
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	80.38

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.7e-34  Score=219.18  Aligned_cols=87  Identities=52%  Similarity=0.998  Sum_probs=79.5

Q ss_pred             hhhhhcCCCccCCEEEEcC--CCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905        155 LEENILKDIEVGKRCKIND--SDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT  232 (248)
Q Consensus       155 ~~~~~~~~~~vG~Rv~v~~--~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  232 (248)
                      ..+..+..|.||+||+|..  ...++|+|||+|++++.+|.|+|||||+|.|+|||+++|+|||+|+|+||+||||++|+
T Consensus         7 ~~~~~~~~l~VG~RV~V~~~~~~~~~G~vryiG~~~~~~g~~vGVelD~p~G~~dG~~~g~~YF~c~~~~G~Fv~~~~v~   86 (98)
T d1tova_           7 LNEEAAKNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRPVDVK   86 (98)
T ss_dssp             HHHHHHTTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECGGGEE
T ss_pred             hhhhhccCCccCCEEEEecCCCCceeEEEEEeeecCCCCceEEEEEeCCCCCCcCCEECCEEEEEcCCCCEEEeChhheE
Confidence            3445667899999999973  23579999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q psy13905        233 IGDFPVLDP  241 (248)
Q Consensus       233 ~g~fp~~d~  241 (248)
                      +|+||++|+
T Consensus        87 ~gd~P~~d~   95 (98)
T d1tova_          87 VGDFPELSI   95 (98)
T ss_dssp             ESCCCCCCC
T ss_pred             ECCCCCCCc
Confidence            999999983

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-31  Score=210.06  Aligned_cols=83  Identities=48%  Similarity=0.947  Sum_probs=76.0

Q ss_pred             hhhcCCCccCCEEEEcC--CCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        157 ENILKDIEVGKRCKIND--SDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       157 ~~~~~~~~vG~Rv~v~~--~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      .+....+.||+||+|..  .+.++|+|||+|++++.+|.|+|||||+|.|||||+|+|+|||+|+|+||+||||++|++|
T Consensus        27 ~~~~~~~~VG~rv~V~~~~~~~r~G~vryvG~~~~~~g~~~GVelD~p~Gk~dG~~~G~rYF~c~~~~G~fv~~~~v~~~  106 (113)
T d1whga_          27 KAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQAKYGAFVKPSAVTVG  106 (113)
T ss_dssp             HHHHTTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCCTTTEEEECGGGEEEE
T ss_pred             hhhcccCcCCCEEEEEcCCCCceEEEEEEeeecCCCCCeEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHeEEC
Confidence            34456799999999973  2357899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy13905        235 DFPVL  239 (248)
Q Consensus       235 ~fp~~  239 (248)
                      +|||-
T Consensus       107 ~~~p~  111 (113)
T d1whga_         107 DSGPS  111 (113)
T ss_dssp             ECCSS
T ss_pred             CCCCC
Confidence            99983

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-30  Score=200.27  Aligned_cols=81  Identities=41%  Similarity=0.729  Sum_probs=74.0

Q ss_pred             hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCC
Q psy13905        159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPV  238 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~  238 (248)
                      .+..|.||+||.|.+  .++|+|||+|++++++|+|+|||||+|.|||||+++|+|||+|+|+||+|||+++|+..+.+.
T Consensus        21 ~~~~~~vG~rV~V~~--~~~G~vryiG~~~~~~g~~vGVElDep~GkndGtv~G~~YF~C~~~~GiFv~~~~v~~~~~~~   98 (109)
T d2coza1          21 ELFDFHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPPQKISHIPENF   98 (109)
T ss_dssp             SCSSCCTTEEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECGGGEECCCTTC
T ss_pred             ccccCccCCEEEECC--CeeEEEEEEeecCCCCCcEEEEEecCCCCCCCCEECCEEEEecCCCcEEEeCHHHcEecCCCc
Confidence            346799999999976  478999999999999999999999999999999999999999999999999999999876665


Q ss_pred             CCC
Q psy13905        239 LDP  241 (248)
Q Consensus       239 ~d~  241 (248)
                      .|.
T Consensus        99 ~d~  101 (109)
T d2coza1          99 DDY  101 (109)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            554

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.2e-30  Score=186.83  Aligned_cols=70  Identities=46%  Similarity=0.866  Sum_probs=66.3

Q ss_pred             CccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905        163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI  233 (248)
Q Consensus       163 ~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  233 (248)
                      |+||+||+|.+. .++|+|||+|++++++|.|+|||||+|.||||||++|+|||+|+|+||+||++++|++
T Consensus         2 l~vG~rV~v~~~-~~~G~vryvG~~~~~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~G~Fv~~~~v~v   71 (72)
T d2hqha1           2 LRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQSQIQV   71 (72)
T ss_dssp             CSTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTTEEEECGGGEEE
T ss_pred             cccCCEEEEcCC-CEEEEEEEecccCCCCCcEEEEEEccCCCCCCCEECCEEEEecCCCcEEEechHHEEE
Confidence            789999999754 5789999999999999999999999999999999999999999999999999999875

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-29  Score=184.33  Aligned_cols=69  Identities=46%  Similarity=0.949  Sum_probs=65.3

Q ss_pred             CccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905        163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI  233 (248)
Q Consensus       163 ~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  233 (248)
                      ++||+||.|.+  .++|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+|+||+||+|++|..
T Consensus         1 f~vG~rV~v~~--~~~G~vryvG~~~~~~g~~vGVEld~p~Gk~dGt~~G~~YF~c~~~~G~Fv~~~~v~k   69 (71)
T d2e3ia1           1 FRVGERVWVNG--NKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRPSKLTR   69 (71)
T ss_dssp             CCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECGGGEES
T ss_pred             CccCCEEEECC--CcEEEEEEEeecCCCCCcEEEEEECCCCCCCCCEECCEEEEecCCCcEEEeCHHHEEe
Confidence            57999999976  4789999999999999999999999999999999999999999999999999999863

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=183.20  Aligned_cols=68  Identities=43%  Similarity=0.968  Sum_probs=64.8

Q ss_pred             CccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc
Q psy13905        163 IEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT  232 (248)
Q Consensus       163 ~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~  232 (248)
                      |+||+||+|.+  .++|+|||+|++++.+|.|+|||||+|.|+|||+++|+|||+|+|+||+|||+++|.
T Consensus         1 l~vG~rV~v~~--~~~G~vryvG~~~~~~g~~~GVeld~~~Gk~dG~~~G~~YF~c~~~~G~Fv~~~kv~   68 (71)
T d2e3ha1           1 LKIGDRVLVGG--TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVT   68 (71)
T ss_dssp             CCTTCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEGGGEE
T ss_pred             CccCCEEEECC--CceEEEEEecccCCCCCCEEEEEECCCCCCCCCEECCEEEEecCCCCEEEeCHHHcE
Confidence            58999999976  489999999999999999999999999999999999999999999999999999984

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-29  Score=188.57  Aligned_cols=73  Identities=40%  Similarity=0.808  Sum_probs=68.3

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      +..|+||+||+|.+  .++|+|||+|++++++|.|+|||||+|.|||||+++|+|||+|+|+||+||||++|..+
T Consensus         8 ~~~l~vG~rV~v~~--~~~G~vryvG~~~~~~g~~vGVElD~p~GkndGt~~G~rYF~C~~~~G~Fv~~~~v~~~   80 (83)
T d2cp0a1           8 ALGLRLGDRVLLDG--QKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASVSKISKA   80 (83)
T ss_dssp             HHTCCTTCEEEETT--TEEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECGGGEEEC
T ss_pred             ecCCccCCEEEECC--CceEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEEeecCCCceEEcCHHHcccc
Confidence            34799999999976  47999999999999999999999999999999999999999999999999999999754

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.2e-29  Score=194.40  Aligned_cols=78  Identities=37%  Similarity=0.736  Sum_probs=73.1

Q ss_pred             hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCc-cCCCC
Q psy13905        159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLT-IGDFP  237 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~-~g~fp  237 (248)
                      ....++||+||.|.+  .++|+|||+|++++.+|+|+|||||+|.|||||+|+|+|||+|+|+||+||++++|+ +++||
T Consensus        22 ~~~~~~vGdrV~v~~--~~~G~vryvG~~~~~~g~~~GVEld~p~GkndGt~~G~rYF~C~p~~GiFv~~~~v~~~~d~p   99 (102)
T d1whha_          22 EGAKAEVGDQVLVAG--QKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGSGP   99 (102)
T ss_dssp             SCCSSCTTSEEEETT--TEEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECGGGEEECCSCT
T ss_pred             ccCcCcccCEEEECC--CceEEEEEecccCCCCCeEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEeCHHHceECCCCC
Confidence            346799999999976  479999999999999999999999999999999999999999999999999999998 67898


Q ss_pred             C
Q psy13905        238 V  238 (248)
Q Consensus       238 ~  238 (248)
                      +
T Consensus       100 ~  100 (102)
T d1whha_         100 S  100 (102)
T ss_dssp             T
T ss_pred             C
Confidence            6

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-29  Score=188.13  Aligned_cols=75  Identities=35%  Similarity=0.773  Sum_probs=69.3

Q ss_pred             hhcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccC
Q psy13905        158 NILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG  234 (248)
Q Consensus       158 ~~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g  234 (248)
                      ..+..+.+|+||.|.+  .++|+|||+|++++.+|+|+|||||+|.|+|||+++|+|||+|+|+||+|||+++|+.+
T Consensus        13 ~~~~~l~vG~rV~V~~--~~~G~vryiG~~~~~~g~~vGVeld~p~GkndG~~~G~~YF~c~~~~G~Fv~~~~v~~~   87 (88)
T d2cowa1          13 EVPEWLREGEFVTVGA--HKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRPSRVRRA   87 (88)
T ss_dssp             CCCSSCCTTCEEECSS--SCEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECGGGCEEC
T ss_pred             cccccCcccCEEEECC--CcEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEEEecCCCcEEEecHHHcEEC
Confidence            4456799999999976  47899999999999999999999999999999999999999999999999999999753

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-28  Score=189.68  Aligned_cols=82  Identities=26%  Similarity=0.509  Sum_probs=74.5

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEc-CCCCCCceeEcCeEeeecCCCceeeEcCCCCccC-CCC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLD-EPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIG-DFP  237 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelD-ep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g-~fp  237 (248)
                      ...|+||+||+|.+...++|+|||+|++++.+|.|+||||| ++.|+|||+++|+|||+|+++||+||++++|+.. +||
T Consensus        15 ~~~l~vG~rV~V~~~~~~~G~vryvG~~~~~~g~~~GVeldd~~~G~ndGt~~G~rYF~C~~~~G~Fv~~~~~~~~~~f~   94 (104)
T d1ixda_          15 SHGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKLKSCRPDSRFA   94 (104)
T ss_dssp             SSCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEGGGEEECCTTC
T ss_pred             CCCCccCCEEEECCCCCcEEEEEEEecCCCCCCcEEEEEeCCCCCCCcCCEECCEEEEecCCCcEEEechHHCccccccc
Confidence            45799999999986556889999999999999999999996 5679999999999999999999999999999987 598


Q ss_pred             CCCC
Q psy13905        238 VLDP  241 (248)
Q Consensus       238 ~~d~  241 (248)
                      ++++
T Consensus        95 ~~~p   98 (104)
T d1ixda_          95 SLQP   98 (104)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            8764

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=9.9e-29  Score=186.83  Aligned_cols=74  Identities=39%  Similarity=0.798  Sum_probs=69.4

Q ss_pred             hcCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905        159 ILKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI  233 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  233 (248)
                      ....|++|+||.|.+. .++|+|||+|++++++|.|+|||||+|.|||||+|+|+|||+|+|+||+|||+++|..
T Consensus         9 ~~~~l~vG~rV~v~~~-~~~G~vryvG~~~~~~g~~vGVElD~p~GkndGtv~G~~YF~C~~~~G~Fv~~~~v~~   82 (91)
T d1whka_           9 GTVKLHEGSQVLLTSS-NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPNYGVLVRPSRVTY   82 (91)
T ss_dssp             CCCCCCSSCEEEESSS-CCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCSTTCCCEECGGGEEC
T ss_pred             CCcccccCCEEEEcCC-CeEEEEEEeeecCCCCCCEEEEEeCCCCCCCCCEECCEEEeecCCCceEEeCHHHeEE
Confidence            4567999999999854 5789999999999999999999999999999999999999999999999999999975

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.7e-28  Score=187.55  Aligned_cols=72  Identities=42%  Similarity=0.863  Sum_probs=67.7

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCcc
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTI  233 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~  233 (248)
                      ...|+||+||.|.+  .++|+|||+|++++++|+|+|||||+|.|||||+++|+|||+|+|+||+||++++|..
T Consensus        22 ~~~l~vG~rV~v~~--~~~G~VryvG~~~~~~g~~vGVeldep~GkndGt~~G~~YF~C~~~~GiFv~~~~v~~   93 (102)
T d1whja_          22 SLGLKLGDRVVIAG--QKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPLSKISK   93 (102)
T ss_dssp             HHTCCTTCEEEETT--TEEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGEEE
T ss_pred             ccCCccCCEEEECC--CCeEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEEeecCCCcEEEecHHHeeE
Confidence            34699999999976  4789999999999999999999999999999999999999999999999999999964

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.5e-28  Score=200.05  Aligned_cols=78  Identities=40%  Similarity=0.880  Sum_probs=71.9

Q ss_pred             cCCCccCCEEEEcCCCCceeEEEEecccCCCCceEEEEEEcCCCCCCceeEcCeEeeecCCCceeeEcCCCCccCCCCCC
Q psy13905        160 LKDIEVGKRCKINDSDVRFGTVMFVGETKFSSGVWVGVKLDEPFGKNNGTVKDVKYFECEENYGMFVKPGRLTIGDFPVL  239 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~~~~~~G~vryvG~~~~~~g~wvGVelDep~GkndGs~~G~rYF~c~~~~G~Fv~~~~v~~g~fp~~  239 (248)
                      ...|+||+||.|.+  .++|+|||||+++|++|.|+|||||+|.|||||+|+|+|||.|+|+||+||++++|...+++..
T Consensus        29 ~~~~~vGdrV~v~g--~~~G~vr~iG~~~~~~G~wvGVELd~p~GKNdGsv~G~~YF~c~~~~G~Fv~~s~v~~~~~~~~  106 (160)
T d2cp6a1          29 ERELKIGDRVLVGG--TKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPST  106 (160)
T ss_dssp             SSCCCSSCEEEETT--TEEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEGGGCEECCCSSC
T ss_pred             CCCCccCCEEEECC--CCeEEEEEecccCCCCCCEEEEEeCCCCCCCCCEECCEEeeecCCCceEEecHhHceEcCCCCC
Confidence            45799999999986  4799999999999999999999999999999999999999999999999999999987665543

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.6e-27  Score=177.63  Aligned_cols=79  Identities=28%  Similarity=0.442  Sum_probs=69.2

Q ss_pred             cCCCccCCEEEEcC---CCCceeEEEEecccCCCC---ceEEEEEEcC---CCCCCceeEcCeEeeecCCCceeeEcCCC
Q psy13905        160 LKDIEVGKRCKIND---SDVRFGTVMFVGETKFSS---GVWVGVKLDE---PFGKNNGTVKDVKYFECEENYGMFVKPGR  230 (248)
Q Consensus       160 ~~~~~vG~Rv~v~~---~~~~~G~vryvG~~~~~~---g~wvGVelDe---p~GkndGs~~G~rYF~c~~~~G~Fv~~~~  230 (248)
                      .+.|.||+||+|..   ...+.|+|||+|++++.+   |+|+|||||+   +.|||||+++|+|||+|+|+||+||++++
T Consensus         5 ~~~l~vGs~V~V~~~~g~~~~~G~vryvG~~~~~~~~~G~~~GVeldd~~~~~Gk~dGt~~G~rYF~C~~~~GiFv~~~k   84 (95)
T d1whla_           5 SSGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVALDK   84 (95)
T ss_dssp             CCCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECGGG
T ss_pred             cCCCccCCEEEEEecCCCCceeEEEEEeccCCCCCCCCceEEEEEecCCcCCCCccCCEECCEEEEecCCCcEEEecHHH
Confidence            45799999999962   224679999999998864   8999999976   45999999999999999999999999999


Q ss_pred             CccCCCCC
Q psy13905        231 LTIGDFPV  238 (248)
Q Consensus       231 v~~g~fp~  238 (248)
                      |++.++||
T Consensus        85 v~~~~~~p   92 (95)
T d1whla_          85 LELIESGP   92 (95)
T ss_dssp             EEECCSCS
T ss_pred             eEEcccCC
Confidence            99988776

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7e-25  Score=165.86  Aligned_cols=79  Identities=22%  Similarity=0.342  Sum_probs=68.6

Q ss_pred             hcCCCccCCEEEEcC-CCCceeEEEEecccCC--CCceEEEEEEcCCCCCCceeEcCeEeeecC-CCceeeEcCCCCccC
Q psy13905        159 ILKDIEVGKRCKIND-SDVRFGTVMFVGETKF--SSGVWVGVKLDEPFGKNNGTVKDVKYFECE-ENYGMFVKPGRLTIG  234 (248)
Q Consensus       159 ~~~~~~vG~Rv~v~~-~~~~~G~vryvG~~~~--~~g~wvGVelDep~GkndGs~~G~rYF~c~-~~~G~Fv~~~~v~~g  234 (248)
                      ....|.||+||+|.. ...++|||||+|.++.  ..|.|+|||||+|.|||||+++|+|||.|. ++||+||+++++...
T Consensus         6 s~~~l~vg~RV~V~~~~~~~~GtVryiG~lp~~~~~g~wvGVElDep~Gk~dGt~~G~r~f~~~~~~~g~fv~~~~~~~~   85 (92)
T d1whma_           6 SGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFACVESTILLHINDIIPE   85 (92)
T ss_dssp             CSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCCTTTEEEEEGGGEEEC
T ss_pred             cCCCceeCCEEEEecCCCceEEEEEEeCCCCCcCCCceEEEEEeCCCCCCCCCeECCEEEEEecCCCcEEEEehhhceEc
Confidence            345799999999963 2358999999998875  579999999999999999999999999999 589999999999876


Q ss_pred             C-CC
Q psy13905        235 D-FP  237 (248)
Q Consensus       235 ~-fp  237 (248)
                      + .|
T Consensus        86 ~s~p   89 (92)
T d1whma_          86 SSGP   89 (92)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            3 44

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.2e-23  Score=155.40  Aligned_cols=85  Identities=33%  Similarity=0.518  Sum_probs=79.3

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +.+.|.|+|+|+++++.+   |+||++++||.+||+||+.+|||||++|||+|++.+++.+..+++|+++|++|++++|+
T Consensus         4 gss~v~v~I~s~~~~~~~---E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~   80 (95)
T d1v6ea_           4 GSSGVMVFISSSLNSFRS---EKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGC   80 (95)
T ss_dssp             CCCCEEEEEEETTSSSCE---EEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTC
T ss_pred             CCCcEEEEEEECCCCcEE---EEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCC
Confidence            567999999999888777   99999999999999999999999999999999987777777888999999999999999


Q ss_pred             EEEEEeCC
Q psy13905         93 TLFVEGNY  100 (248)
Q Consensus        93 ~IhVvD~~  100 (248)
                      +|||+|.+
T Consensus        81 ~ihlvd~~   88 (95)
T d1v6ea_          81 RIHVIDHS   88 (95)
T ss_dssp             EEEEBCCS
T ss_pred             EEEEEeCC
Confidence            99999975

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.86  E-value=1e-21  Score=147.80  Aligned_cols=83  Identities=24%  Similarity=0.341  Sum_probs=77.2

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      ..|+|.||++.+++..   |+||++++||.+||+||+.++|+||++|+|+|++..+..+..|++|+++|++||+++|++|
T Consensus         3 ~~~~l~it~~~t~~~~---E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~I   79 (90)
T d1t0ya_           3 EVYDLEITTNATDFPM---EKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI   79 (90)
T ss_dssp             CEEEEEEEESSCCSCE---EEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEE
T ss_pred             cEEEEEEEECCCccEE---EEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEE
Confidence            4689999999988666   9999999999999999999999999999999998877777789999999999999999999


Q ss_pred             EEEeCC
Q psy13905         95 FVEGNY  100 (248)
Q Consensus        95 hVvD~~  100 (248)
                      ||+|.+
T Consensus        80 hvvd~~   85 (90)
T d1t0ya_          80 HAVDVT   85 (90)
T ss_dssp             EEEECT
T ss_pred             EEEeCC
Confidence            999975

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=7.5e-16  Score=116.66  Aligned_cols=83  Identities=23%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             ceEEEEEEeCC--CCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce-eeccCCCCcccCCCCCCCC
Q psy13905         15 GTVELYITNSK--DKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL-VSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        15 ~~V~v~ItS~~--~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~-i~~L~~d~~~L~~y~i~dG   91 (248)
                      ..|+|.|..+.  .....   ++++++++||.+||.+|+.++|||+++|+|+|.+..... ...|++|+++|++|+|++|
T Consensus         8 ~~iti~i~~~~~~~~~~~---~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg   84 (97)
T d1wjna_           8 QLLTLKIKCSNQPERQIL---EKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENG   84 (97)
T ss_dssp             CEEEEEEEESSCSSSCCE---EEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred             CeEEEEEEeCCCCCCceE---EEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCC
Confidence            46888888533  33223   899999999999999999999999999999998654332 3458899999999999999


Q ss_pred             cEEEEEeCC
Q psy13905         92 MTLFVEGNY  100 (248)
Q Consensus        92 ~~IhVvD~~  100 (248)
                      ++|||.+++
T Consensus        85 ~~I~V~~~~   93 (97)
T d1wjna_          85 DCLLVRWSG   93 (97)
T ss_dssp             CEEEEECCS
T ss_pred             CEEEEEeCC
Confidence            999999864

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=5.3e-14  Score=100.75  Aligned_cols=72  Identities=13%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .++|.|.+....  .   +..++++.||.+||++|+..+|+||++|+|+|.   |+.   | +|+.+|++|++.+|++||
T Consensus         1 si~I~Vk~~~~~--~---~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~~~I~~g~~i~   68 (73)
T d2bwfa1           1 SLNIHIKSGQDK--W---EVNVAPESTVLQFKEAINKANGIPVANQRLIYS---GKI---L-KDDQTVESYHIQDGHSVH   68 (73)
T ss_dssp             EEEEEEEETTEE--E---EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEE
T ss_pred             CEEEEEEeCCeE--E---EEEECCCChHHHHHHHHHHHHCcChHHeEEEEC---CeE---c-cCCCcHHHCCCCCCCEEE
Confidence            368889886654  3   789999999999999999999999999999996   876   4 677899999999999999


Q ss_pred             EEeC
Q psy13905         96 VEGN   99 (248)
Q Consensus        96 VvD~   99 (248)
                      ++-.
T Consensus        69 lV~~   72 (73)
T d2bwfa1          69 LVKS   72 (73)
T ss_dssp             EEEC
T ss_pred             EEee
Confidence            9853

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.4e-13  Score=95.10  Aligned_cols=72  Identities=22%  Similarity=0.404  Sum_probs=62.7

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      ..+.|+|.+..... .   ...++++.||.+||++|+..+|+||++|+|++.   |+.   | .|+.+|++|+|++|++|
T Consensus         2 ~~~qi~Vk~~~G~~-~---~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~---gk~---L-~d~~tL~~y~I~~~sti   70 (76)
T d1z2ma2           2 EPLSILVRNNKGRS-S---TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE---GKP---L-EDQLPLGEYGLKPLSTV   70 (76)
T ss_dssp             CCEEEEEECTTSCE-E---EEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEE
T ss_pred             CCEEEEEEcCCCCE-E---EEEECCCCcHHHHHHHHHHHhcCChhHeEEEEC---CeE---C-CCCCcHHHcCCCCCCEE
Confidence            46788998655331 3   789999999999999999999999999999997   776   4 68899999999999999


Q ss_pred             EEE
Q psy13905         95 FVE   97 (248)
Q Consensus        95 hVv   97 (248)
                      |++
T Consensus        71 ~l~   73 (76)
T d1z2ma2          71 FMN   73 (76)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.2e-13  Score=98.49  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +..+|+|+|++....  .   +..+++++||.+||++|+..+|+||+.|+|+|.   |+.   | +|+.+|++|+|.+|+
T Consensus         4 ~~~~i~I~Vkt~~~~--~---~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~---Gk~---L-~D~~tL~~y~i~~gs   71 (84)
T d1yqba1           4 SPHLIKVTVKTPKDK--E---DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA---GKI---L-KDPDSLAQCGVRDGL   71 (84)
T ss_dssp             CTTEEEEEEECSSCE--E---EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTSBHHHHTCCTTC
T ss_pred             CCCEEEEEEEcCCCc--E---EEEECCCCcHHHHHHHHHHHHCcCchhEEEEEe---eee---c-cccCcHHHcCCCCCC
Confidence            345799999987655  3   688999999999999999999999999999986   776   4 678899999999999


Q ss_pred             EEEEEe
Q psy13905         93 TLFVEG   98 (248)
Q Consensus        93 ~IhVvD   98 (248)
                      +||++-
T Consensus        72 ti~lv~   77 (84)
T d1yqba1          72 TVHLVI   77 (84)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999874

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.1e-12  Score=95.01  Aligned_cols=70  Identities=10%  Similarity=0.143  Sum_probs=60.9

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|......  +  +...++++.||.+||++|+..+||||++|+|+|.   |+.   | .|+.+|++|+|++|++||++
T Consensus         4 ~I~Vk~~~g~--t--~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~---Gk~---L-~d~~tL~~y~I~~~sti~lv   72 (78)
T d2zeqa1           4 IVFVRFNSSY--G--FPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFA---GKE---L-PNHLTVQNCDLEQQSIVHIV   72 (78)
T ss_dssp             EEEEESSSSS--C--EEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEET---TEE---E-CTTCBGGGSSCCTTCEEEEE
T ss_pred             EEEEEcCCCC--E--EEEEEcccccHHHHHHHHHHHHCcChhHeEEEEe---eeE---c-CCCCCHHHcCCCCCCEEEEE
Confidence            5888865433  2  2789999999999999999999999999999997   877   4 68899999999999999997


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        73 ~   73 (78)
T d2zeqa1          73 Q   73 (78)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=99.42  Aligned_cols=71  Identities=11%  Similarity=0.189  Sum_probs=63.4

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      ..|+|+|++....  .   +..++++.||.+||++|+..+|+|+++|+|+|.   |+.   | .|+.+|.+|+|++|++|
T Consensus        31 ~~i~V~Vk~~~~~--~---~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~---Gk~---L-~D~~tL~~~~I~~g~~I   98 (103)
T d1j8ca_          31 KIIKVTVKTPKEK--E---EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA---GKI---L-KDQDTLIQHGIHDGLTV   98 (103)
T ss_dssp             CCEEEEEECSSCE--E---EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET---TEE---E-STTSCGGGTTCSSSEEE
T ss_pred             CeEEEEEECCCcc--E---EEEECCCChHHHHHHHHHHHHCcCHHHeeeeee---eec---c-cCCCcHHHcCCCCCCEE
Confidence            3789999976554  4   789999999999999999999999999999987   776   4 57889999999999999


Q ss_pred             EEE
Q psy13905         95 FVE   97 (248)
Q Consensus        95 hVv   97 (248)
                      |++
T Consensus        99 ~lv  101 (103)
T d1j8ca_          99 HLV  101 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.4e-13  Score=97.48  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=62.1

Q ss_pred             EEEEEEeCCCCcccccceEEe-----cCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         17 VELYITNSKDKHESCLNLKKL-----KLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~-----~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      ++|.|+++...  .   +..+     +++.||++||++|+..||+||++|+|++.   |+.   |.+|+++|++|++++|
T Consensus         2 i~i~V~~~~~~--~---~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~---G~~---L~~d~~tL~~~gi~~g   70 (81)
T d1wxva1           2 LTVTVTHSNEK--H---DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK---GKS---LKEMETPLSALGIQDG   70 (81)
T ss_dssp             EEEEEECSSSE--E---EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET---TEE---ECCSSSBHHHHTCCSS
T ss_pred             EEEEEEECCee--E---EEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeec---CeE---eCcCCCChHHCCCCCC
Confidence            57888887665  3   6676     46899999999999999999999999987   766   6678899999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      ++|+|+-.
T Consensus        71 ~~i~lv~~   78 (81)
T d1wxva1          71 CRVMLIGK   78 (81)
T ss_dssp             EEEEEESC
T ss_pred             CEEEEEEe
Confidence            99999863

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.1e-13  Score=98.32  Aligned_cols=73  Identities=12%  Similarity=0.141  Sum_probs=64.4

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...++|+|++....  .   +..++++.||.+||++|+..+|+||++|+|+|.   |+.   | .|+.+|++|+|.+|++
T Consensus         8 ~~~i~v~Vk~~~~~--~---~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~---Gk~---L-~d~~tL~~~gI~~gs~   75 (83)
T d1wx8a1           8 SRIIRVSVKTPQDC--H---EFFLAENSNVRRFKKQISKYLHCNADRLVLIFT---GKI---L-RDQDILSQRGILDGST   75 (83)
T ss_dssp             SCEEEEEEECSSSE--E---EEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET---TEE---C-CTTSCHHHHTCCTTEE
T ss_pred             CCeEEEEEEcCCCc--E---EEEECCCChHHHHHHHHHHHhCCChhHEEEEEE---hhc---c-ccCCcHHHcCCCCCCE
Confidence            45789999986654  4   789999999999999999999999999999996   876   5 5778999999999999


Q ss_pred             EEEEe
Q psy13905         94 LFVEG   98 (248)
Q Consensus        94 IhVvD   98 (248)
                      ||++-
T Consensus        76 I~lv~   80 (83)
T d1wx8a1          76 VHVVV   80 (83)
T ss_dssp             EECCB
T ss_pred             EEEEE
Confidence            99873

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=96.76  Aligned_cols=76  Identities=20%  Similarity=0.315  Sum_probs=65.6

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +.+.+.|+|.+..... .   ...++++.||.+||++|+..+||||++|||+|.   |+.   | .|+.+|.+|+|++|+
T Consensus         4 ~s~~mqI~Vk~~~g~~-~---~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~---Gk~---L-~d~~tL~~y~I~~~s   72 (87)
T d1wh3a_           4 GSSGIQVFVKNPDGGS-Y---AYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ---GQV---L-QDWLGLGIYGIQDSD   72 (87)
T ss_dssp             CSSSEEEEEEETTTEE-E---EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET---TEE---C-CSSSBHHHHTCCTTE
T ss_pred             CCCcEEEEEECCCCCE-E---EEEECCcCcHHHHHHHHHHHHCcChHHeEEEee---ceE---c-CCCCcHHHcCCCCCC
Confidence            4567889999754431 2   688999999999999999999999999999996   876   4 688999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +||++-.
T Consensus        73 tl~l~~r   79 (87)
T d1wh3a_          73 TLILSKK   79 (87)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9999853

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=8.6e-13  Score=94.43  Aligned_cols=71  Identities=18%  Similarity=0.324  Sum_probs=61.7

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      +++|+|.+..... .   +.+++++.||.+||++|+..+|+||++|+|++.   |+.   | .|+.+|++|+|++|++||
T Consensus         1 mi~i~vk~~~Gk~-~---~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~---Gk~---L-~d~~tL~~y~I~~gstl~   69 (73)
T d1m94a_           1 MIEVVVNDRLGKK-V---RVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKG---GSV---L-KDHISLEDYEVHDQTNLE   69 (73)
T ss_dssp             CEEEEEEETTTEE-E---EEEECTTSBHHHHHHHHHHHHCCTTTSEEEESS---SCE---E-CTTSBHHHHTCCTTEEEE
T ss_pred             CeEEEEECCCCCE-E---EEEECCcCcHHHHHHHHHHhhcccccEEEEEEE---eEE---e-cccCcHHHcCCCCCCEEE
Confidence            4688888754331 3   799999999999999999999999999999997   776   4 678999999999999999


Q ss_pred             EE
Q psy13905         96 VE   97 (248)
Q Consensus        96 Vv   97 (248)
                      +.
T Consensus        70 L~   71 (73)
T d1m94a_          70 LY   71 (73)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.8e-12  Score=92.39  Aligned_cols=72  Identities=13%  Similarity=0.105  Sum_probs=59.4

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|.|.+....  .  ++..++++.||.+||++|+..+|+||+.|||+|.. .|+.   | .|+.+|++|||++|++||++
T Consensus         2 ~l~Vk~l~G~--~--~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~-~Gk~---L-~D~~tL~~y~i~~g~~i~lv   72 (76)
T d1z2ma1           2 DLTVKMLAGN--E--FQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP-SGVA---L-QDRVPLASQGLGPGSTVLLV   72 (76)
T ss_dssp             EEEEEESSSC--E--EEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEET-TCCB---C-CSSSCSGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCC--E--EEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcC-CCee---c-cCCCcHHHcCCCCCCEEEEE
Confidence            4566654332  1  27899999999999999999999999999999853 2665   4 67899999999999999997


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      =
T Consensus        73 ~   73 (76)
T d1z2ma1          73 V   73 (76)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.30  E-value=2.8e-12  Score=91.35  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+....  +  ++..++++.||.+||++|+..+|+||++|||+|.   |+.   | .|+.+|++|++++|++||++
T Consensus         2 ~I~Vk~~~G~--~--~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~---Gk~---L-~d~~tL~~y~I~~~sti~lv   70 (73)
T d1bt0a_           2 LIKVKTLTGK--E--IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYA---GKQ---L-ADDKTAKDYNIEGGSVLHLV   70 (73)
T ss_dssp             EEEEECTTSC--E--EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCC--E--EEEEECCCCcHHHHHHHHHHHhCCChHHEEEEEC---CeE---c-CCCCcHHHcCCCCCCEEEEE
Confidence            4677754322  1  2789999999999999999999999999999997   877   4 68899999999999999986

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.6e-12  Score=92.23  Aligned_cols=70  Identities=17%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      .|+|.+....  +  ++..++++.||.+||++|+..+|+||+.|+|.|.   |+.   | .|+.+|++|++++|++||++
T Consensus         2 qI~Vk~l~G~--~--~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~---Gk~---L-~d~~tL~~y~i~~~s~I~L~   70 (76)
T d1ogwa_           2 QIFVKTLTGK--T--ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA---GKQ---L-EDGRTLSDYNIQKESTLHLV   70 (76)
T ss_dssp             EEEEEETTSC--E--EEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEcCCCC--E--EEEEECCCCcHHHHHHhhhhhcCCChHHEEeEEC---CeE---c-CCCCCHHHcCCCCCCEEEEE
Confidence            5778864432  1  2789999999999999999999999999999997   776   4 68899999999999999987


Q ss_pred             e
Q psy13905         98 G   98 (248)
Q Consensus        98 D   98 (248)
                      -
T Consensus        71 ~   71 (76)
T d1ogwa_          71 L   71 (76)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.2e-12  Score=97.14  Aligned_cols=78  Identities=18%  Similarity=0.262  Sum_probs=65.3

Q ss_pred             CCceEEEEEEeCCCCcccccceE-EecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         13 GGGTVELYITNSKDKHESCLNLK-KLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~-r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      +.+.++|+|+.....  .   +. .++++.||.+||++|+..||+||++|||++..-.|+.   | .|+.+|.+|+|++|
T Consensus         4 ~s~~~~i~Vk~~~~~--~---~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~---L-~D~~tL~~~~i~~g   74 (90)
T d1v5ta_           4 GSSGLPIIVKWGGQE--Y---SVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKP---A-ENDVKLGALKLKPN   74 (90)
T ss_dssp             CCCSCCEEEEETTEE--E---EECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEE---C-CTTSBHHHHTCCTT
T ss_pred             CCCcEEEEEEECCeE--E---EEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcC---C-CCcCcHHHcCCCCC
Confidence            456788999987665  3   55 6999999999999999999999999999853223665   4 67899999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      ++||++-+
T Consensus        75 ~~i~lv~s   82 (90)
T d1v5ta_          75 TKIMMMGT   82 (90)
T ss_dssp             EEEEEECC
T ss_pred             CEEEEEee
Confidence            99999865

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=89.37  Aligned_cols=70  Identities=13%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             EEEEEeCCCCcccccceE-EecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         18 ELYITNSKDKHESCLNLK-KLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~-r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      .|+|.+..-....   .. .++++.||++||++|+..+|+||++|||+|.   |+.   | .|+++|++|++++|++||+
T Consensus         2 ~I~Vktl~Gk~t~---~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~---Gk~---L-~D~~tL~~y~I~~~sti~l   71 (76)
T d2faza1           2 WIQVRTMDGRQTH---TVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYR---GKQ---M-EDGHTLFDYEVRLNDTIQL   71 (76)
T ss_dssp             EEEEEETTSSCEE---EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTCBTTTTTCCTTCEEEE
T ss_pred             EEEEEeCCCCcEE---EEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEe---eEe---c-cCCCcHHHcCCCCCCEEEE
Confidence            4677754321112   34 5899999999999999999999999999997   877   4 6889999999999999998


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      +
T Consensus        72 v   72 (76)
T d2faza1          72 L   72 (76)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.9e-12  Score=95.63  Aligned_cols=74  Identities=20%  Similarity=0.333  Sum_probs=64.1

Q ss_pred             CCCceEEEEEEeCC-CCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCC
Q psy13905         12 DGGGTVELYITNSK-DKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVEN   90 (248)
Q Consensus        12 ~~~~~V~v~ItS~~-~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~d   90 (248)
                      +...+|.|+|.... ..  .   ..++.++.||.+||++|+..+|+|++.|+|+|.   |+.    ..|+.+|++|+|++
T Consensus        24 ~~~~~i~V~V~~~~Gk~--~---~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~---Gk~----L~D~~tL~dygI~~   91 (100)
T d1uh6a_          24 GAATMIEVVCNDRLGKK--V---RVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW---YTI----FKDHVSLGDYEIHD   91 (100)
T ss_dssp             SCCCEEEEEEECSSSSC--E---EEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET---TEE----CCSSCBHHHHTCCT
T ss_pred             CCCceEEEEEECCCCCE--E---EEEECCcChHHHHHHHHHHHHCCCcceEEEEEE---eec----ccCcCCHHHcCCCC
Confidence            34557899998643 44  3   799999999999999999999999999999997   776    47899999999999


Q ss_pred             CcEEEEE
Q psy13905         91 EMTLFVE   97 (248)
Q Consensus        91 G~~IhVv   97 (248)
                      |++||+.
T Consensus        92 GstI~L~   98 (100)
T d1uh6a_          92 GMNLELY   98 (100)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            9999984

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=6.5e-12  Score=92.68  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=53.4

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      ..+++++.||.+||++|+..+|+|+++|+|+|.   |+.   | .|+.+|++|+|.+|++||++-
T Consensus        25 ~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~---Gk~---L-~D~~tL~dY~I~~gsti~l~~   82 (86)
T d1zkha1          25 VFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYE---GIF---I-KDSNSLAYYNMANGAVIHLAL   82 (86)
T ss_dssp             EEEECTTSBHHHHHHHHHHHTCCCTTTEEEEET---TEE---E-CTTSBHHHHTCCTTEEEEEEE
T ss_pred             EEEECCCChHHHHHHHHHhhhcCChHHEEEEeC---CcC---c-CCCCCHHHcCCCCCCEEEEEE
Confidence            588999999999999999999999999999986   776   4 578999999999999999974

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.7e-12  Score=91.89  Aligned_cols=73  Identities=14%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .+.|+|....... .   ...++++.||.+||++|+..+|+|+++|||+|.   |+.   | +|+.+|++|+|++|++||
T Consensus         3 e~qi~Vk~~~G~~-~---~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~---Gk~---L-~d~~tL~~y~I~~~sti~   71 (80)
T d1ttna1           3 ECQLRLRLSTGKD-L---KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS---GRP---L-TDKMKFEELKIPKDYVVQ   71 (80)
T ss_dssp             SEEEEEEETTTEE-E---EEEECTTSHHHHHHHHHHHTTCCCSTTCEEEET---TEE---C-CTTSHHHHCCCSSSCEEE
T ss_pred             eEEEEEEcCCCCE-E---EEEECCcCcHHHHHHHHHHHhCCCcccEEEEEC---ceE---c-CCCCcHHHcCCCCCCEEE
Confidence            4678888643321 3   789999999999999999999999999999987   776   4 688999999999999999


Q ss_pred             EEeC
Q psy13905         96 VEGN   99 (248)
Q Consensus        96 VvD~   99 (248)
                      ++-.
T Consensus        72 lvi~   75 (80)
T d1ttna1          72 VIVS   75 (80)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9853

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.9e-12  Score=97.19  Aligned_cols=74  Identities=26%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcE
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMT   93 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~   93 (248)
                      ...|.|.|..+...  .   +.+++++.||.+||++|+..+|+|+++|+|++.   |+    | .|+.+|.+|+|.+|++
T Consensus        15 ~~~i~v~V~~~~k~--~---~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~---g~----l-~D~~tL~~~~I~~gs~   81 (95)
T d1v86a_          15 KELVDLKIIWNKTK--H---DVKVPLDSTGSELKQKIHSITGLPPAMQKVMYK---GL----V-PEDKTLREIKVTSGAK   81 (95)
T ss_dssp             CCCEEEEEEETTEE--E---EEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSS---SB----C-CSSSBHHHHCCCTTEE
T ss_pred             ccEEEEEEEECCEE--E---EEEECCCCcHHHHHHHHHHHhCCChhHEEEEec---cc----c-cCCCcHHHCCCCCCCE
Confidence            34688889886665  4   799999999999999999999999999999874   43    3 5788999999999999


Q ss_pred             EEEEeCC
Q psy13905         94 LFVEGNY  100 (248)
Q Consensus        94 IhVvD~~  100 (248)
                      |||+-+.
T Consensus        82 i~lvgs~   88 (95)
T d1v86a_          82 IMVVGST   88 (95)
T ss_dssp             EEECCSS
T ss_pred             EEEEecC
Confidence            9999653

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=7.5e-12  Score=90.25  Aligned_cols=71  Identities=14%  Similarity=0.071  Sum_probs=58.6

Q ss_pred             EEEEEeCCCCcccccceE-EecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         18 ELYITNSKDKHESCLNLK-KLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~-r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      .|+|++-......   .. .++++.||++||.+|+..+|+|+++|+|+|.   |+.   | +|+.+|++|+|++|++||+
T Consensus         2 ~I~Vk~l~G~~t~---~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~---Gk~---L-~d~~tL~~y~I~~~s~i~l   71 (76)
T d1wy8a1           2 WIQVRTIDGSKTC---TIEDVSRKATIEELRERVWALFDVRPECQRLFYR---GKQ---L-ENGYTLFDYDVGLNDIIQL   71 (76)
T ss_dssp             EEEEEETTCSCEE---EEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET---TEE---C-CSSSBHHHHTCCTTCEEEE
T ss_pred             EEEEEeCCCCceE---EEeccCCCChHHHHHHHHHHHHCCCchhcEEEEE---eeE---e-cCCCCHHHcCCCCCCEEEE
Confidence            4677764332112   33 6999999999999999999999999999997   776   4 6889999999999999998


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      +-
T Consensus        72 v~   73 (76)
T d1wy8a1          72 LV   73 (76)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=7.4e-12  Score=94.06  Aligned_cols=75  Identities=20%  Similarity=0.249  Sum_probs=63.5

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +.+.+.|.|....... .   ...++++.||.+||++|+..+||||++|||+|.   |+.   |. |+ +|++|+|++|+
T Consensus         4 ~s~~~~I~VK~~~~~~-~---~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~---Gk~---L~-d~-tL~~~gi~~g~   71 (96)
T d1wgga_           4 GSSGYSVTVKWGKEKF-E---GVELNTDEPPMVFKAQLFALTGVQPARQKVMVK---GGT---LK-DD-DWGNIKMKNGM   71 (96)
T ss_dssp             CCCEEEEEEEETTEEE-E---EEEEESSSCHHHHHHHHHHHTCCCTTTSCCEET---TEE---CC-SS-CCCSCCCCSSC
T ss_pred             CCCceEEEEEeCCCCE-E---EEEECCCCcHHHHHHHhhhhcCccceeeEEeec---Ccc---cC-CC-cHHHCCCCCCC
Confidence            4567889998765542 2   689999999999999999999999999999986   776   54 33 69999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +|||+-+
T Consensus        72 ~i~lv~t   78 (96)
T d1wgga_          72 TVLMMGS   78 (96)
T ss_dssp             EEECCCC
T ss_pred             EEEEEee
Confidence            9999864

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.20  E-value=4.9e-12  Score=97.76  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             eEEecC-CCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEe
Q psy13905         34 LKKLKL-NNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        34 E~r~~~-~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      ...+.+ +.||.+||+||+..+|+|+++|||+|.   |+.   | .|+.+|++|+|++|++||++-
T Consensus        44 ~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~tL~~ynI~~gsti~L~l  102 (111)
T d1we6a_          44 EITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK---AGF---L-KDNMSLAHYNVGAGEILTLSL  102 (111)
T ss_dssp             EEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS---SSB---C-CTTSBTTTTTCSSSCEEEEEC
T ss_pred             EEEecCCccHHHHHHHHHHHHHCCCccceEEEEe---eEE---c-cccCCHHHcCCCCCCEEEEEe
Confidence            677765 899999999999999999999999997   776   4 678999999999999999974

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.8e-12  Score=90.38  Aligned_cols=70  Identities=11%  Similarity=0.153  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      +.|+|.+..... .   ...++++.||.+||++|+..+|+|+++|||+|.   |+.   | .|+.+|++|++ +|++||+
T Consensus         1 m~I~Vk~~~g~~-~---~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~---Gk~---L-~d~~tL~dy~i-~~~ti~l   68 (73)
T d1wx9a1           1 LEVLVKTLDSQT-R---TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQ---GRV---L-QDDKKLQEYNV-GGKVIHL   68 (73)
T ss_dssp             EEEEEECTTSCE-E---EEEECTTSBHHHHHHHHHHHHCCCTTTCCCEET---TEE---C-CSSSBHHHHTC-TTEEEBC
T ss_pred             CEEEEEcCCCCE-E---EEEECCCChHHHHHHHHHHHhCCChHHEEEEEC---CeE---c-cCCCCHHHhCC-CCCEEEE
Confidence            367787644331 3   789999999999999999999999999999997   876   4 67899999999 5899998


Q ss_pred             Ee
Q psy13905         97 EG   98 (248)
Q Consensus        97 vD   98 (248)
                      +-
T Consensus        69 v~   70 (73)
T d1wx9a1          69 VE   70 (73)
T ss_dssp             CC
T ss_pred             Ee
Confidence            74

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.3e-11  Score=93.96  Aligned_cols=79  Identities=14%  Similarity=0.200  Sum_probs=63.9

Q ss_pred             CCceEEEEEEeCC---CCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905         13 GGGTVELYITNSK---DKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        13 ~~~~V~v~ItS~~---~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      +.+-..|+|+...   ....   +...+++++||.+||++|+..+|||+++|+|+|.   |+.   |.+|.++|++|||+
T Consensus         4 ~~~~m~itV~~~~~~~~~~t---~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~---Gk~---L~dd~~tL~~~gI~   74 (102)
T d1v5oa_           4 GSSGMLITVYCVRRDLTEVT---FSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM---EQL---LTDDHCSLGSYGLK   74 (102)
T ss_dssp             CSCCEEEEEEECCCCCCCCE---EEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET---TEE---ECCSSSBHHHHTCC
T ss_pred             CcCCEEEEEEecccCCCCCE---EEEEECCcccHHHHHHHHHHHhCCCcceEEEEeC---CeE---eecccCCHHHcCCC
Confidence            3444566666432   2221   3789999999999999999999999999999987   776   66788999999999


Q ss_pred             CCcEEEEEeCC
Q psy13905         90 NEMTLFVEGNY  100 (248)
Q Consensus        90 dG~~IhVvD~~  100 (248)
                      +|.+||++...
T Consensus        75 ~g~~i~l~~r~   85 (102)
T d1v5oa_          75 DGDMVVLLQKD   85 (102)
T ss_dssp             TTEEEEECBCC
T ss_pred             CCCEEEEEECC
Confidence            99999998643

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.2e-11  Score=88.95  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=60.4

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC---CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG---QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG---ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      .++|+|.+....  .  ++.+++++.||.+||++|+...|   +||++|||+|.   |+.   | .|+.+|++|+|++|+
T Consensus         2 ~~~i~vk~l~g~--~--~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~---Gk~---L-~D~~tL~~y~I~~~s   70 (77)
T d1oqya4           2 AVTITLKTLQQQ--T--FKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA---GKI---L-SDDVPIRDYRIDEKN   70 (77)
T ss_dssp             CCCEEEEETTTE--E--EEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESS---SSE---E-CSSSBTTTTCCCTTS
T ss_pred             cEEEEEECCCCC--E--EEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEEC---CcC---c-cCCCcHHHcCCCCCC
Confidence            467888865433  1  27899999999999999999998   99999999987   887   5 578999999999999


Q ss_pred             EEEEE
Q psy13905         93 TLFVE   97 (248)
Q Consensus        93 ~IhVv   97 (248)
                      +|+|.
T Consensus        71 ~i~~~   75 (77)
T d1oqya4          71 FVVVM   75 (77)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            88875

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=6.1e-11  Score=89.05  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=63.0

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCc
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEM   92 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~   92 (248)
                      +.+.++|+|++..... .   ..+++++.||.+||+||+   .+++++|||+|.   |+.   |.+|..+|.+|+|.+|+
T Consensus         4 ~~s~m~i~vK~l~~~~-~---~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~---Gk~---L~dd~~tL~~y~i~~g~   70 (95)
T d1wiaa_           4 GSSGINVRLKFLNDTE-E---LAVARPEDTVGTLKSKYF---PGQESQMKLIYQ---GRL---LQDPARTLSSLNITNNC   70 (95)
T ss_dssp             CCCSEEEEEEETTTEE-E---EEEECSSSBHHHHHHHHS---SSTTTTCEEEET---TEE---CCCSSCBTTTTTCCTTE
T ss_pred             CCCcEEEEEEcCCCCE-E---EEEECCcCcHHHHHHHHh---cCCcceeEEEEC---CEE---cccCCCCHHHcCCCCCC
Confidence            5678899999765441 3   789999999999999886   678999999998   877   66788999999999999


Q ss_pred             EEEEEeC
Q psy13905         93 TLFVEGN   99 (248)
Q Consensus        93 ~IhVvD~   99 (248)
                      +||++-.
T Consensus        71 ~v~l~~~   77 (95)
T d1wiaa_          71 VIHCHRS   77 (95)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEc
Confidence            9999864

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.3e-10  Score=86.50  Aligned_cols=72  Identities=14%  Similarity=0.211  Sum_probs=60.0

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC---CCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG---QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG---ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      .|+|.+....  .  ++..++++.||.+||++|+..+|   +|++.|||+|.   |+.   | .|+.+|++|+|.+|++|
T Consensus         2 ~I~vk~~~g~--~--~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~---Gk~---L-~d~~tL~~y~I~~~s~i   70 (95)
T d1uela_           2 QVTLKTLQQQ--T--FKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYA---GKI---L-NDDTALKEYKIDEKNFV   70 (95)
T ss_dssp             EEEEEETTCC--E--EEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEET---TEE---C-CTTSBGGGGTCCSSSEE
T ss_pred             EEEEEeCCCC--E--EEEEECCCccHHHHHHHHHhhhcccCCCccceEEEEC---CeE---c-cCCCcHHHcCCCCCCEE
Confidence            4677754333  1  37899999999999999999987   89999999998   877   4 67899999999999999


Q ss_pred             EEEeCC
Q psy13905         95 FVEGNY  100 (248)
Q Consensus        95 hVvD~~  100 (248)
                      |++-..
T Consensus        71 ~lv~~~   76 (95)
T d1uela_          71 VVMVTK   76 (95)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            987643

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=1.5e-10  Score=87.91  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=62.0

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHH-----HCCC--CCCeEEEEEeCCCceeeccCCCCcccCCC
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELL-----TGQM--SSNMTISLYNRNHDLVSHLSDNSMLLGQY   86 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~-----tGip--p~~mrL~l~~~~g~~i~~L~~d~~~L~~y   86 (248)
                      ...+.|.|.....+-..   ..+|+++.||.+||++|+..     .|+|  |++|||+|.   |+.   | .|+++|++|
T Consensus         5 ~~~i~I~~r~~~G~~i~---~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~---Gk~---L-~D~~tL~dy   74 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIG---PKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISA---GKV---L-ENSKTVKDY   74 (101)
T ss_dssp             CCCEEEEEEETTSCEEE---EEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEET---TEE---C-CTTSBGGGG
T ss_pred             cceEEEEEEeCCCCeec---ceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEEC---CeE---e-cCCCCHHHc
Confidence            45677888854433123   58999999999999999886     8998  889999998   887   4 788999999


Q ss_pred             CCCCCc------EEEEEe
Q psy13905         87 PVENEM------TLFVEG   98 (248)
Q Consensus        87 ~i~dG~------~IhVvD   98 (248)
                      ++..|.      +||++-
T Consensus        75 ~i~~g~~~~~~~tmHlVv   92 (101)
T d1se9a_          75 RSPVSNLAGAVTTMHVII   92 (101)
T ss_dssp             SCCTTSCTTCCEEEEEEE
T ss_pred             CCCCCCcCCCceEEEEEe
Confidence            999997      999984

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=1.3e-10  Score=90.24  Aligned_cols=75  Identities=11%  Similarity=0.115  Sum_probs=62.4

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHH--------HHHHCCCCCCeEEEEEeCCCceeeccCCCCcccC
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKL--------ELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLG   84 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KL--------e~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~   84 (248)
                      ....|+|.|...... ..   +..|++++||.+||++|        +...|+||++|||+|.   |+.   | .|+.+|+
T Consensus        13 ~~~~i~i~v~~l~Gk-~~---~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~---Gk~---L-~D~~tL~   81 (116)
T d1wgha_          13 PADMINLRLILVSGK-TK---EFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQ---GRF---L-HGNVTLG   81 (116)
T ss_dssp             CSSSEEEEEECSSSC-EE---EEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEET---TEE---E-CSSCBTT
T ss_pred             CCCeEEEEEEEcCCC-EE---EEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEEC---CEE---e-cCCCCHH
Confidence            556889999853322 13   79999999999999999        4779999999999998   887   4 7899999


Q ss_pred             CCCCCCCcE--EEEEe
Q psy13905         85 QYPVENEMT--LFVEG   98 (248)
Q Consensus        85 ~y~i~dG~~--IhVvD   98 (248)
                      +|+|.+|.+  ||++-
T Consensus        82 ~~~i~~g~~~~lhlv~   97 (116)
T d1wgha_          82 ALKLPFGKTTVMHLVA   97 (116)
T ss_dssp             TTTCCSSCEEEEEEEE
T ss_pred             HcCCCCCCEEEEEEEe
Confidence            999999975  77763

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.9e-10  Score=85.86  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHC--CCCCCeEEEEEeCCCceeeccCCCCcccCCCCC--
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTG--QMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPV--   88 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tG--ipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i--   88 (248)
                      +...|+|+|.+.....  .+++..+++++||.+||++|+...|  +|+++|||+|.   |+.    ..|+.+|++|..  
T Consensus         4 gs~~i~l~Ik~~~~~~--~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~---Gk~----L~D~~~L~d~~~~~   74 (93)
T d1wgda_           4 GSSGVTLLVKSPNQRH--RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS---GKL----LLDHQCLRDLLPKQ   74 (93)
T ss_dssp             CSCCCEEEEECSSSSC--CCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET---TEE----CCSSSCHHHHSCSS
T ss_pred             CCCcEEEEEECCCCCc--eeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEEC---CeE----ccCCCCHHHhCccc
Confidence            4457899999865542  2247888999999999999999965  99999999998   876    489999999964  


Q ss_pred             CCCcEEEEEe
Q psy13905         89 ENEMTLFVEG   98 (248)
Q Consensus        89 ~dG~~IhVvD   98 (248)
                      .++.+||++-
T Consensus        75 ~~~~viHLV~   84 (93)
T d1wgda_          75 EKRHVLHLVC   84 (93)
T ss_dssp             SCSEEEEEEC
T ss_pred             CCCCEEEEEe
Confidence            5667999983

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.6e-11  Score=92.51  Aligned_cols=76  Identities=12%  Similarity=0.127  Sum_probs=63.9

Q ss_pred             CCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeE---------------EEEEeCCCceeeccC
Q psy13905         13 GGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMT---------------ISLYNRNHDLVSHLS   77 (248)
Q Consensus        13 ~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mr---------------L~l~~~~g~~i~~L~   77 (248)
                      +.+.++|.|....... .   ...++++.||.+||++|+..+|+|+++||               |+|.   |+.   |.
T Consensus         4 gss~M~v~Vk~~~G~~-~---~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~---G~~---L~   73 (105)
T d1v2ya_           4 GSSGMTVRVCKMDGEV-M---PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSA---GEK---LT   73 (105)
T ss_dssp             CCCSEEEEEECSSSCE-E---EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESS---SCE---EC
T ss_pred             CCCcEEEEEEeCCCCE-E---EEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEEC---CEE---Cc
Confidence            4567788998544331 2   68899999999999999999999999998               8876   776   66


Q ss_pred             CCCcccCCCCCCCCcEEEEEe
Q psy13905         78 DNSMLLGQYPVENEMTLFVEG   98 (248)
Q Consensus        78 ~d~~~L~~y~i~dG~~IhVvD   98 (248)
                      ++..+|.+|+|.+|++||++.
T Consensus        74 d~~~tL~~~gI~~g~~l~lv~   94 (105)
T d1v2ya_          74 EDRKKLRDYGIRNRDEVSFIK   94 (105)
T ss_dssp             CSSSBHHHHTCCSSEEEEEEE
T ss_pred             ccCCCHHHcCCCCCCEEEEEE
Confidence            777899999999999999985

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.4e-10  Score=87.71  Aligned_cols=59  Identities=20%  Similarity=0.171  Sum_probs=55.0

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEEEeC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFVEGN   99 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhVvD~   99 (248)
                      ..++.+++||.+||.+|+..+|+||++|+|+|.   |+.   | .|+.+|++|+|.+|++|||+-.
T Consensus        33 ~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~---Gk~---L-~d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          33 LLETRLHITGRELRSKIAETFGLQENYIKIVIN---KKQ---L-QLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET---TEE---C-CTTSBHHHHTCCSSEEEEEECC
T ss_pred             EEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEc---ccC---c-CCCcCHHHcCCCCCCEEEEEEc
Confidence            799999999999999999999999999999998   876   4 6789999999999999999864

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=98.81  E-value=5.8e-09  Score=74.91  Aligned_cols=70  Identities=9%  Similarity=0.115  Sum_probs=61.6

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .|+|.|+++...  .   ..++.++.|+..|++.+....|+++++|+|+|.   |+.   | +++.++.+|++++|.+||
T Consensus         4 ~I~ikv~~~~~~--~---~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~---G~~---l-~~~~T~~~~~i~dgd~I~   71 (79)
T d1euvb_           4 HINLKVSDGSSE--I---FFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIR---I-QADQTPEDLDMEDNDIIE   71 (79)
T ss_dssp             EEEEEEESSSCE--E---EEEEETTSCTHHHHHHHHHHTTCCGGGEEEEET---TEE---C-CTTCCTTTTTCCTTEEEE
T ss_pred             EEEEEECCCCeE--E---EEEECCCCcHHHHHHHHHHHhCCChHhEEEEEC---CEE---e-CCCCCHHHCCCCCCCEEE
Confidence            578888765444  4   688999999999999999999999999999986   777   3 688899999999999999


Q ss_pred             EE
Q psy13905         96 VE   97 (248)
Q Consensus        96 Vv   97 (248)
                      |+
T Consensus        72 v~   73 (79)
T d1euvb_          72 AH   73 (79)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=2.8e-09  Score=79.74  Aligned_cols=79  Identities=13%  Similarity=0.006  Sum_probs=59.0

Q ss_pred             eeecCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHH--CCC-CCCeEEEEEeCCCceeeccCCCCcccC
Q psy13905          8 MDIMDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLT--GQM-SSNMTISLYNRNHDLVSHLSDNSMLLG   84 (248)
Q Consensus         8 ~~~~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~t--Gip-p~~mrL~l~~~~g~~i~~L~~d~~~L~   84 (248)
                      +-++|+....+..|+.+...  .   ....+.++||.+||++|....  ++| |++|||+|.   |+.   | .|+.+|.
T Consensus        10 ~~l~~~p~~pk~~i~~p~~~--~---~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~---Gk~---L-~D~~tL~   77 (94)
T d1x1ma1          10 VKLADQPLAPKSILQLPETE--L---GEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC---GRK---L-KDDQTLD   77 (94)
T ss_dssp             EEETTCTTSCCEEECCCCCS--S---CSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET---TEE---C-CTTCBHH
T ss_pred             EEEccCCCCCcceEECCCCc--c---CccCCCccCHHHHHHHHHHHcccCCCChhheEEEEC---CeE---E-CCCccHH
Confidence            34556655555555544433  2   223456899999999999885  444 689999998   887   4 7899999


Q ss_pred             CCCCCCCcEEEEEe
Q psy13905         85 QYPVENEMTLFVEG   98 (248)
Q Consensus        85 ~y~i~dG~~IhVvD   98 (248)
                      +|+|++|++||++-
T Consensus        78 ~y~I~~gstihLV~   91 (94)
T d1x1ma1          78 FYGIQPGSTVHVLR   91 (94)
T ss_dssp             HHTCCTTCEEEEEE
T ss_pred             HcCCCCCCEEEEEE
Confidence            99999999999985

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.3e-09  Score=79.01  Aligned_cols=68  Identities=22%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             EEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC------
Q psy13905         18 ELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE------   91 (248)
Q Consensus        18 ~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG------   91 (248)
                      -|.|.+....  .   ...++++.||.+||++|+.++|||+++|||++.   |+.   | .|+.+|++|||.++      
T Consensus         3 fv~i~~~k~T--i---~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~---Gk~---L-~D~~TL~dYgI~~~~~~~~~   70 (103)
T d2c9wb1           3 FLMIRRHKTT--I---FTDAKESSTVFELKRIVEGILKRPPDEQRLYKD---DQL---L-DDGKTLGECGFTSQTARPQA   70 (103)
T ss_dssp             EEEEEEBTEE--E---EEEECTTSBHHHHHHHHHHHHCCCGGGEEEEET---TEE---C-CTTSBHHHHTCCTTTSBTTB
T ss_pred             EEEEeCCCEE--E---EEEeCCCCcHHHHHHHHHHHhCCCcccEEEEEC---CEE---c-CCCCCHHHcCCCcccccccC
Confidence            3445554443  3   578899999999999999999999999999987   776   4 78999999999544      


Q ss_pred             -cEEEEE
Q psy13905         92 -MTLFVE   97 (248)
Q Consensus        92 -~~IhVv   97 (248)
                       ..+|+.
T Consensus        71 ~~~~~l~   77 (103)
T d2c9wb1          71 PATVGLA   77 (103)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence             466664

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.2e-07  Score=64.64  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=62.0

Q ss_pred             eEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEE
Q psy13905         16 TVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLF   95 (248)
Q Consensus        16 ~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~Ih   95 (248)
                      .|+|.|.+...+. .   +.++.++.|+..|+.......|+|+++++|+|.   |+.   | .++.|+.+|++++|.+|+
T Consensus         2 ~I~ikv~~~dg~~-v---~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fd---G~~---l-~~~~T~~~l~~edgD~Id   70 (77)
T d2uyzb1           2 YIKLKVIGQDSSE-I---HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFE---GQR---I-ADNHTPKELGMEEEDVIE   70 (77)
T ss_dssp             EEEEEEECTTCCE-E---EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET---TEE---C-CTTCCHHHHTCCTTEEEE
T ss_pred             EEEEEEECCCCCE-E---EEEECCCChHHHHHHHHHHHhCCChhHEEEEEC---CEE---C-CCCCCHHHcCCCCCCEEE
Confidence            4788888766542 3   688999999999999999999999999999986   776   3 567899999999999999


Q ss_pred             EEe
Q psy13905         96 VEG   98 (248)
Q Consensus        96 VvD   98 (248)
                      |+-
T Consensus        71 v~~   73 (77)
T d2uyzb1          71 VYQ   73 (77)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            973

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.89  E-value=4.7e-06  Score=61.37  Aligned_cols=63  Identities=11%  Similarity=0.162  Sum_probs=49.1

Q ss_pred             EEec-CCCCHHHHHHHHHHHHCCCCCCeEEEEEeC---CCc-----eeeccCCCCcccCCCCCCCCcEEEEE
Q psy13905         35 KKLK-LNNTIGELKQKLELLTGQMSSNMTISLYNR---NHD-----LVSHLSDNSMLLGQYPVENEMTLFVE   97 (248)
Q Consensus        35 ~r~~-~~~TI~eLK~KLe~~tGipp~~mrL~l~~~---~g~-----~i~~L~~d~~~L~~y~i~dG~~IhVv   97 (248)
                      ..++ ++.|+++||.+|+...+||.+.|+|++.-+   ...     ....|.+|.++|.++++..|+.||+.
T Consensus        14 v~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsivyL~   85 (94)
T d1wf9a1          14 VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA   85 (94)
T ss_dssp             EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred             EEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEEEEE
Confidence            4564 478999999999999999999999987300   000     01246788899999999999999974

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.0013  Score=45.33  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=59.5

Q ss_pred             EEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEEEE
Q psy13905         17 VELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTLFV   96 (248)
Q Consensus        17 V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~IhV   96 (248)
                      |+|.|.+...+. .   ..++.++.++.-|........|++++.+++.|.   |..   + .+..|..++++++|..|-|
T Consensus         2 I~lkv~~~~g~~-v---~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fd---G~~---i-~~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQDGSV-V---QFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD---GQP---I-NETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCE-E---EEEECTTSCTHHHHHHHHHHHTCCTTTCEEEET---TEE---C-CTTCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCE-E---EEEEcCCChHHHHHHHHHHHhCCCccceEEEEC---CEE---c-CCCCCHHHcCCCCCCEEEE
Confidence            678888765542 3   689999999999999999999999999999976   776   3 5678999999999999987


Q ss_pred             E
Q psy13905         97 E   97 (248)
Q Consensus        97 v   97 (248)
                      .
T Consensus        71 ~   71 (72)
T d1wm3a_          71 F   71 (72)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.062  Score=37.20  Aligned_cols=80  Identities=13%  Similarity=0.020  Sum_probs=61.0

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      |+.++++|.|..+.-.+ .   .++|+++.||..|.+-+... |.++..-.|.-.  --+......+.+++|.+.|+.+.
T Consensus         1 n~e~~~~i~iRlPdG~~-~---~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~--~Pr~~l~~~d~~~TL~e~gL~p~   73 (82)
T d1h8ca_           1 NAEPVSKLRIRTPSGEF-L---ERRFLASNKLQIVFDFVASK-GFPWDEYKLLST--FPRRDVTQLDPNKSLLEVKLFPQ   73 (82)
T ss_dssp             CCCCCEEEEEECTTSCE-E---EEEECTTSBHHHHHHHHHHH-TCCSSSEEEEET--TTTEETTTCCTTSBHHHHCCCSE
T ss_pred             CCCCcEEEEEECCCCCE-E---EEEECCCCcHHHHHHHHHhc-CCCCCceEEEec--CcccccccccccCCHHHCCCCCC
Confidence            46788899999766542 4   79999999999999999874 778777666532  22322233467899999999999


Q ss_pred             cEEEEEe
Q psy13905         92 MTLFVEG   98 (248)
Q Consensus        92 ~~IhVvD   98 (248)
                      ..|+|..
T Consensus        74 ~~L~vq~   80 (82)
T d1h8ca_          74 ETLFLEA   80 (82)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEe
Confidence            9999875

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.041  Score=38.79  Aligned_cols=53  Identities=17%  Similarity=0.008  Sum_probs=43.0

Q ss_pred             CceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCcee
Q psy13905         14 GGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLV   73 (248)
Q Consensus        14 ~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i   73 (248)
                      ...|+|.++.+..-  .   -.++++++|..+|+++|...+++.  ..+|.|.+.+|..+
T Consensus        10 ~~~ikVKv~~~~D~--~---~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~Dedgd~v   62 (85)
T d1ip9a_          10 LKTTKIKFYYKDDI--F---ALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSGE   62 (85)
T ss_dssp             CCCEEEEECBTTCC--E---EEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCCS
T ss_pred             CCCEEEEEEECCcE--E---EEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEEcCCCCEE
Confidence            34677888766554  2   588999999999999999999864  58999999888864

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.44  E-value=0.23  Score=35.01  Aligned_cols=80  Identities=11%  Similarity=0.023  Sum_probs=57.6

Q ss_pred             CCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCC
Q psy13905         12 DGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENE   91 (248)
Q Consensus        12 ~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG   91 (248)
                      +..+.++|.|..+.-++ .   .++|.++.||..|..=+... +..+..-+|...... +.+  ..+.+++|.+.|+.+.
T Consensus        12 ~~~~~~~i~iRlPdG~r-~---~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr-~~~--~~d~~~TL~e~gl~p~   83 (96)
T d2cr5a1          12 TAEEVVTVALRCPNGRV-L---RRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPR-RAL--EVEGGSSLEDIGITVD   83 (96)
T ss_dssp             SCSSEEEEEEECTTSCE-E---EEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSC-CBC--CCCSSCBHHHHTCSSC
T ss_pred             CCCCeEEEEEECCCCCE-E---EEEECCcccHHHHHHHHHHh-ccCcccceeecCCCc-eec--CccCCCcHHHCCCCCC
Confidence            45568999999765542 4   79999999999999988765 445555555533221 221  2355789999999999


Q ss_pred             cEEEEEeC
Q psy13905         92 MTLFVEGN   99 (248)
Q Consensus        92 ~~IhVvD~   99 (248)
                      +.|+|...
T Consensus        84 ~~L~v~~~   91 (96)
T d2cr5a1          84 TVLNVEEK   91 (96)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEecC
Confidence            99999874

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.94  E-value=0.46  Score=33.09  Aligned_cols=74  Identities=11%  Similarity=0.134  Sum_probs=53.3

Q ss_pred             cCCCceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHH-CCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCC
Q psy13905         11 MDGGGTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLT-GQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVE   89 (248)
Q Consensus        11 ~~~~~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~t-Gipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~   89 (248)
                      -+..+.++|.|..+.-.. .   +++|+++.||.+|.+-+.... +.+...-.|.-.-+  +.  .+.+++.+|.+.|+.
T Consensus         9 de~~p~t~I~iRlPdG~~-~---~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~P--rr--~l~d~~~TL~e~gL~   80 (89)
T d1i42a_           9 NEAEPTTNIQIRLADGGR-L---VQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFP--NK--ELADENQTLKEANLL   80 (89)
T ss_dssp             CTTSCCEEEEEEETTTCC-E---EEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTT--TE--ECCCCSSCSGGGTTC
T ss_pred             CCCCCcEEEEEEcCCCCE-E---EEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCC--Cc--ccCCCcCcHHHCCCc
Confidence            356678899999765442 4   899999999999999998764 55555555543212  22  256788999999999


Q ss_pred             CCc
Q psy13905         90 NEM   92 (248)
Q Consensus        90 dG~   92 (248)
                      +++
T Consensus        81 ~s~   83 (89)
T d1i42a_          81 NAV   83 (89)
T ss_dssp             CSE
T ss_pred             Cce
Confidence            654

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.24  E-value=1.1  Score=32.89  Aligned_cols=78  Identities=13%  Similarity=0.093  Sum_probs=57.1

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCceeeccCCCCcccCCCCCCCCcEE
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLVSHLSDNSMLLGQYPVENEMTL   94 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i~~L~~d~~~L~~y~i~dG~~I   94 (248)
                      ...+|.|.-+.-.+ .   .++|..+.||.+|..-+... +..+..-+|....+ -+. ....+.+++|.+.|+.+..+|
T Consensus        42 p~~~l~iRlPdG~r-~---~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fP-r~~-l~~~d~~~TL~e~gL~P~~~L  114 (124)
T d1wj4a_          42 PKAQLMLRYPDGKR-E---QITLPEQAKLLALVKHVQSK-GYPNERFELLTNFP-RRK-LSHLDYDITLQEAGLCPQETV  114 (124)
T ss_dssp             CEEEEEEECTTSCE-E---EEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSS-CCE-ETSSCSSSCTTTTTCCSSBCC
T ss_pred             CceEEEEECCCCCE-E---EEEeCCCCcHHHHHHHHHhc-ccCCcceEEeeccc-ccc-cccccccCcHHHcCCCCCCEE
Confidence            37789999655442 4   79999999999999999875 55666666654322 122 222356899999999999999


Q ss_pred             EEEeC
Q psy13905         95 FVEGN   99 (248)
Q Consensus        95 hVvD~   99 (248)
                      +|...
T Consensus       115 ~vee~  119 (124)
T d1wj4a_         115 FVQES  119 (124)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99864

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.99  E-value=1  Score=31.56  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=39.1

Q ss_pred             ceEEEEEEeCCCCcccccceEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCcee
Q psy13905         15 GTVELYITNSKDKHESCLNLKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDLV   73 (248)
Q Consensus        15 ~~V~v~ItS~~~s~~s~~~E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~i   73 (248)
                      +.|+|.+|.......   |...++.++|+.+|+++|...+|++  ..+|.|.|.++..+
T Consensus         3 p~vtvKvtf~~dt~R---F~ls~~~~~~~~~L~~~i~~rf~l~--~~~lkY~Ddd~e~v   56 (85)
T d2bkfa1           3 PQVTLNVTFKNEIQS---FLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEV   56 (85)
T ss_dssp             CCEEEEEEETTEEEE---EEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEE
T ss_pred             ccEEEEEEECCceEE---EEecCCCCCcHHHHHHHHHHhcCcc--cceEEEEcCCCCEE
Confidence            567888886544200   0112345799999999999999986  68999999888763

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.79  E-value=0.63  Score=32.51  Aligned_cols=39  Identities=8%  Similarity=0.037  Sum_probs=35.3

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCCCce
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRNHDL   72 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~g~~   72 (248)
                      -.++++....++|.++|......+|+..+|.|+..++..
T Consensus        17 al~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~~~~~~e   55 (82)
T d1oeya_          17 VMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNE   55 (82)
T ss_dssp             EEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSS
T ss_pred             EEEccCCCCHHHHHHHHHHHhCCChhheEEEeccCCCCc
Confidence            689999999999999999999999999999998655554

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.38  E-value=2.6  Score=29.82  Aligned_cols=68  Identities=12%  Similarity=0.028  Sum_probs=40.9

Q ss_pred             eEEecCCCCHHHHHHHHHHHHCCCCCCeEEEEEeCC-Cce-----eecc-----CCCCcccCCCCCCCCcEEEEEeCCC
Q psy13905         34 LKKLKLNNTIGELKQKLELLTGQMSSNMTISLYNRN-HDL-----VSHL-----SDNSMLLGQYPVENEMTLFVEGNYL  101 (248)
Q Consensus        34 E~r~~~~~TI~eLK~KLe~~tGipp~~mrL~l~~~~-g~~-----i~~L-----~~d~~~L~~y~i~dG~~IhVvD~~l  101 (248)
                      ...|++++|+.+|=+.|...--.--..=-|...-.. ++.     +-.|     .+=.++|.+.|+++|.+|+|.|..+
T Consensus         4 ~l~~~~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~VtD~t~   82 (92)
T d1y8xb1           4 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTT   82 (92)
T ss_dssp             CEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTC
T ss_pred             eEEcCCCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEecCCC
Confidence            478899999999988887752222222122111111 111     1111     1114789999999999999999873