Psyllid ID: psy14089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
MLAANQNVEVENSDLSKSSIVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEFTKKSKNASIASTAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQNSNRESEDVEVMSTDSSSSSSSDSQ
Secondary Structure (PSIPRED)
ccccccccEEEccccccccEEEccccccccccccccEEEEEcccccccccEEEEEEEHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccEEEEEcccccccccccccEEEEEccccEEEEEEEEEEEEEEEEcccccccHcccccHHHHHHHHcccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcHHcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
mlaanqnvevensdlskssivynnthkgiatpnlqkTVVYCNKNEVVKQSFRIEIEVEEFTKKSKNASIASTAGSWylethshqkpsrtqifsrytpgyhfsnmssknistgEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKsknastagfedahgvwesasgsnknEATAIFQAKQKLQSInkankrpvssEELIKYAHRisssnavcapltwqpgdprrpyptdieMRVGFLgrlndsplnghllpqqslgdlhrtpselsqqnqfswhsgdmhignvpldrqqqnsnresedvevmstdsssssssdsq
Flexible Loop (DISEMBL)
mlaanqnvevensdlskssIVYNNTHkgiatpnlqktVVYCNKNEVVKQSFRIEIEVeeftkksknasIASTAGSWYlethshqkpsrtQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQEAHnhlqktvvyfnkneVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHrisssnavcapltwqpgdprrpyPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQnsnresedvevmstdsssssssdsq
Low Complexity Region (SEG)
MLAANQNVEVENSDLSKSSIVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEFTKKSKNASIASTAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQNSNResedvevmstdsssssssdsQ
Disordered region (IsUnstruct)
*******************IVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEFT*******IASTAGSWYLE***********IFSRYTPGYHFS******ISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEF*******************************************************LIKYAHRISSSNAVCAPLTWQP******YPTDIEMRVGFLGRL***************************************************************************
Disordered Region (DISOPRED)
************SDLSKSSIVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEF**********STAGSWYL*****************TPGYHFSNM*****STGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEI***************EDAHGVWESASGSNKNEATAIFQAK*****************ELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFL******************************************************************************
Disordered Region (DISEMBL)
*************DLSKSSIVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEFTKKSKNASIASTAGSWYL**********TQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR****************************
Disordered Region (DISPRO)
*****QNVEVENSDLSKSSIVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEFTKKSK**SI*ST*GSWYLETHSHQKPSRTQIFSRYTPGYH*******NISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHI***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAANQNVEVENSDLSKSSIVYNNTHKGIATPNLQKTVVYCNKNEVVKQSFRIEIEVEEFTKKSKNASIASTAGSWYLETHSHQKPSRTQIFSRYTPGYHFSNMSSKNISTGEKLLSLIDDIELVAKKKQEAHNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQNSNRESEDVEVMSTDSSSSSSSDSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
Q7QH62	263	Mediator of RNA polymeras	yes	N/A	0.645	0.817	0.428	8e-42
Q177A7	263	Mediator of RNA polymeras	N/A	N/A	0.636	0.806	0.411	2e-41
Q9VS38	258	Mediator of RNA polymeras	yes	N/A	0.612	0.790	0.4	5e-35
Q5M8Y7	252	Mediator of RNA polymeras	yes	N/A	0.636	0.841	0.4	2e-34
Q561Q8	270	Mediator of RNA polymeras	yes	N/A	0.621	0.766	0.403	3e-34
Q9CQA5	270	Mediator of RNA polymeras	yes	N/A	0.621	0.766	0.403	3e-34
Q5XG48	252	Mediator of RNA polymeras	N/A	N/A	0.636	0.841	0.404	3e-34
Q9NPJ6	270	Mediator of RNA polymeras	yes	N/A	0.621	0.766	0.399	9e-34
Q3SYZ9	270	Mediator of RNA polymeras	yes	N/A	0.621	0.766	0.403	1e-33
Q561X3	254	Mediator of RNA polymeras	yes	N/A	0.381	0.5	0.510	4e-30

>sp|Q7QH62|MED4_ANOGA Mediator of RNA polymerase II transcription subunit 4 OS=Anopheles gambiae GN=MED4 PE=3 SV=3

 Score =  171 bits (432), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/252 (42%), Positives = 156/252 (61%), Gaps = 37/252 (14%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
           MSS ++ST E+LL++I+DIE+VAK           +K  + +H Q   +   K++ +K +
Sbjct: 1   MSSYHLSTRERLLAIINDIEIVAKELIENTIAPKAQKMSSTDHAQLVELLVLKDKELKAT 60

Query: 153 FRIEIEEF-TKKSKNASTAGF----EDAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
            ++  E+   +K+ +A         E+ + +      + +  AT+IFQA+QKL SI KAN
Sbjct: 61  LQLAAEQAGIEKNMDALREQVRKQDEEINQLQRQLKEAEQILATSIFQARQKLASIAKAN 120

Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
           KRPVSSEELIK+AHRIS+S+A+CAPLTWQ GD RRPYPTDIEMR+GFLG+ +D  +NGH 
Sbjct: 121 KRPVSSEELIKFAHRISASHAICAPLTWQQGDLRRPYPTDIEMRLGFLGK-SDLNINGHN 179

Query: 268 LPQ-QSLGDLHRTPSEL-----------SQQNQFSWH-SGDMHI------GNVPLDRQQQ 308
           L    SL ++HR  S +           S  NQF+WH SG++H+      G+V LD  + 
Sbjct: 180 LQHPNSLNEMHRNASTVGAGGAGGDIPASAPNQFAWHPSGELHMSMGAGAGSVSLD-TRA 238

Query: 309 NSNRESEDVEVM 320
           + +   +DVEVM
Sbjct: 239 HKDASQDDVEVM 250

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Anopheles gambiae (taxid: 7165)

>sp|Q177A7|MED4_AEDAE Mediator of RNA polymerase II transcription subunit 4 OS=Aedes aegypti GN=MED4 PE=3 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/255 (41%), Positives = 154/255 (60%), Gaps = 43/255 (16%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
           MSS ++ST E+LL+++DDIE+++K           +K  + +H Q   +  +K++ +K +
Sbjct: 1   MSSYHLSTKERLLAIVDDIEIISKELIENTIAPKHQKMSSADHGQLVELLVSKDKELKAT 60

Query: 153 FRIEIEEFTKKSKNASTAGF--------EDAHGVWESASGSNKNEATAIFQAKQKLQSIN 204
            ++  E+   + K     G         E+ + + +    +    AT+IFQ +QKL SIN
Sbjct: 61  LQLAAEQAGIEKK---MDGLREQVKEQDEEINQLQKQLKEAEHILATSIFQGRQKLSSIN 117

Query: 205 KANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLN 264
           KA KRPVSSEELIK+AHRIS+SNA+CAPLTWQ GD RRPYPTDIEMR+GFLG+ +D  +N
Sbjct: 118 KAVKRPVSSEELIKFAHRISASNAICAPLTWQQGDLRRPYPTDIEMRLGFLGK-SDLNIN 176

Query: 265 GHLLP-QQSLGDLHRTPSEL-----------SQQNQFSWH-SGDMHI------GNVPLDR 305
           GH  P Q +L ++ R  +             S QNQF+WH SG++H+      G+V LD 
Sbjct: 177 GHNAPNQNNLNEMQRNAAGAGAGSGVADIPASAQNQFAWHPSGELHMTMGAGAGSVSLDT 236

Query: 306 QQQNSNRESEDVEVM 320
            + + +   +DVEVM
Sbjct: 237 -RSHKDASQDDVEVM 250

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q9VS38|MED4_DROME Mediator of RNA polymerase II transcription subunit 4 OS=Drosophila melanogaster GN=MED4 PE=1 SV=1

 Score =  148 bits (374), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/255 (40%), Positives = 142/255 (55%), Gaps = 51/255 (20%)

Query: 106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT------VVYFNKNEVVKQSFRI--- 155
           S ++ST E+LL LIDDIE++AK+  ++AH  +  T       +   K+E  ++   +   
Sbjct: 2   SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELAEE 61

Query: 156 --EIEEFTKKSKNASTAGFEDAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
             ++EE   + +        +   + +S   +    +TAIFQA+QKL SIN+ANKRPVSS
Sbjct: 62  QAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121

Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
           EELIKYAHRISS+NAV APLTW  GD RRPYPTDIEMR G LG+ ++  +NG  +  Q+ 
Sbjct: 122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGTVTHQNS 180

Query: 274 GDLHRTPSELSQ----------------------QNQFSWHSGDMHI-----GN-VPLDR 305
           G     PSE  +                      QNQF+W+ G++H+     GN V L+ 
Sbjct: 181 G----MPSEQQRTLSGSAGSGSGSGAGGEVPNAFQNQFNWNLGELHMTMGASGNTVALE- 235

Query: 306 QQQNSNRESEDVEVM 320
                 R  +DVEVM
Sbjct: 236 -----TRAQDDVEVM 245

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Required for activated transcription of the MtnA, MtnB and MtnD genes.

Drosophila melanogaster (taxid: 7227)

>sp|Q5M8Y7|MED4_XENTR Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus tropicalis GN=med4 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 143/245 (58%), Gaps = 33/245 (13%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIEIEEFT 161
           M+    ST E+L+S +DD+E+++++  E  A +  QK      +N++++   + +  EF 
Sbjct: 1   MAVPEKSTKERLMSFLDDLEVLSRELIEMLALSRNQKLSQPGEENQILELLIQKD-GEFQ 59

Query: 162 KKSKNASTAG--------FE--------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
           +  K A + G         E        D   + +    +    ATA++QAK+KL+SI+K
Sbjct: 60  ELMKVALSQGKIHQEMQVLEKEVEKRDSDIQQLQKQLKEAEHILATAVYQAKEKLKSIDK 119

Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP--- 262
           A K  +SSEELIKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++++ P   
Sbjct: 120 ARKGAISSEELIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMSNLPTNG 179

Query: 263 LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQ------NSNRES-E 315
           +NGH LP  +L    R P  L+   Q+ W S DM +  +P +   +        N+E+ E
Sbjct: 180 VNGH-LPGDALAA-GRLPDVLAP--QYPWQSNDMSMNMLPPNHSNEFLMESLGPNKENEE 235

Query: 316 DVEVM 320
           DVEVM
Sbjct: 236 DVEVM 240

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q561Q8|MED4_RAT Mediator of RNA polymerase II transcription subunit 4 OS=Rattus norvegicus GN=Med4 PE=2 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)

Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
           ST E+LLS ++D+E+++++  E  A +  QK +    +N+V++     +   +E  K + 
Sbjct: 25  STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 84

Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
           N      E             D   + +    + +  ATA++QAK+KL+SI KA K  +S
Sbjct: 85  NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144

Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
           SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+   S +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 203

Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
             +L    R P  L+   Q+ W S DM +  +P +       +    N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSTDFLLEPPGHNKENEDDVEVM 258

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Rattus norvegicus (taxid: 10116)

>sp|Q9CQA5|MED4_MOUSE Mediator of RNA polymerase II transcription subunit 4 OS=Mus musculus GN=Med4 PE=2 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)

Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIE--IEEFTKKSK 165
           ST E+LLS ++D+E+++++  E  A +  QK +    +N+V++     +   +E  K + 
Sbjct: 25  STRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLAL 84

Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
           N      E             D   + +    + +  ATA++QAK+KL+SI KA K  +S
Sbjct: 85  NQGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144

Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
           SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+   S +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGH-LP 203

Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
             +L    R P  L+   Q+ W S DM +  +P +       +    N+E+E DVEVM
Sbjct: 204 GDALAA-GRLPDVLAP--QYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVM 258

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q5XG48|MED4_XENLA Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus laevis GN=med4 PE=2 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 143/245 (58%), Gaps = 33/245 (13%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRIEIEEFT 161
           M+    ST E+L SL+DD+E+++++  E  A +  QK      +N++++   + +  EF 
Sbjct: 1   MAVPKKSTKERLESLLDDLEVLSREVIETLALSRSQKLSQPGEENQILELLIQKD-GEFQ 59

Query: 162 KKSKNASTAG--------FE--------DAHGVWESASGSNKNEATAIFQAKQKLQSINK 205
           +  K A + G         E        D   + +    +    ATA++QAK+KL+SI+K
Sbjct: 60  ELMKVAFSQGKTHQEMQVLEKEVEKRDSDIQQLQKQLKEAEHILATAVYQAKEKLKSIDK 119

Query: 206 ANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSP--- 262
           A K  +SSEELIKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++++ P   
Sbjct: 120 ARKGVISSEELIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMSNLPTNG 179

Query: 263 LNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDRQQQ------NSNRES-E 315
           +NGH LP  +L    R P  L+   Q+ W S DM +  +P +   +        N+E+ E
Sbjct: 180 VNGH-LPGDALAA-GRLPDVLA--PQYPWQSSDMSMNMLPPNHSNEFLMESLGPNKENEE 235

Query: 316 DVEVM 320
           DVEVM
Sbjct: 236 DVEVM 240

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q9NPJ6|MED4_HUMAN Mediator of RNA polymerase II transcription subunit 4 OS=Homo sapiens GN=MED4 PE=1 SV=1

 Score =  144 bits (363), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 31/238 (13%)

Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
           ST E+LLS ++D+E+++++  E  A +  QK +    +N+V++       E +E  K + 
Sbjct: 25  STRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLAL 84

Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
           N      E             D   + +    + +  ATA++QAK+KL+SI KA K  +S
Sbjct: 85  NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144

Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
           SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+   + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203

Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
             +L    R P  L+   Q+ W S DM +  +P +       +    N+E+E DVE+M
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q3SYZ9|MED4_BOVIN Mediator of RNA polymerase II transcription subunit 4 OS=Bos taurus GN=MED4 PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 139/238 (58%), Gaps = 31/238 (13%)

Query: 110 STGEKLLSLIDDIELVAKKKQE--AHNHLQKTVVYFNKNEVVKQSFRI--EIEEFTKKSK 165
           ST E+LLS ++D+E+++++  E  A +  QK +    +N+V++       E +E  K + 
Sbjct: 25  STRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLAL 84

Query: 166 NASTAGFE-------------DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
           N      E             D   + +    + +  ATA++QAK+KL+SI KA K  +S
Sbjct: 85  NQGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAIS 144

Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLND---SPLNGHLLP 269
           SEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+EMR G LG++N+   + +NGH LP
Sbjct: 145 SEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGH-LP 203

Query: 270 QQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVPLDR------QQQNSNRESE-DVEVM 320
             +L    R P  L+   Q+ W S DM +  +P +       +    N+E+E DVEVM
Sbjct: 204 GDALA-AGRLPDVLAP--QYPWQSNDMAMNMLPPNHSHDFLLEPPGHNKENEDDVEVM 258

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q561X3|MED4_DANRE Mediator of RNA polymerase II transcription subunit 4 OS=Danio rerio GN=med4 PE=2 SV=1

 Score =  132 bits (332), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 96/141 (68%), Gaps = 14/141 (9%)

Query: 190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
           ATA++QAK+KL+SI+KA K  +SS+E+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct: 106 ATAVYQAKEKLKSIDKARKGSISSKEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 165

Query: 250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP---- 302
           MR G LG +++   + +NGH LP  +L    R P  L+   Q+ W S D+ +G +P    
Sbjct: 166 MRSGMLGNMSNMSTNGVNGH-LPGDALA-AGRLPDVLTP--QYPWQSTDVSMGILPPHHG 221

Query: 303 --LDRQQQNSNRESE-DVEVM 320
                +    N+E+E DVE M
Sbjct: 222 NDFGLEPPGHNKENEDDVEAM 242

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
242007236	255	mediator complex subunit, putative [Pedi	0.636	0.831	0.502	3e-54
91077876	253	PREDICTED: similar to AGAP004063-PA [Tri	0.642	0.845	0.514	3e-52
270002269	249	hypothetical protein TcasGA2_TC001257 [T	0.630	0.843	0.512	6e-52
239789323	251	ACYPI008468 [Acyrthosiphon pisum]	0.639	0.848	0.493	4e-48
193620211	251	PREDICTED: mediator of RNA polymerase II	0.639	0.848	0.493	4e-48
322786080	254	hypothetical protein SINV_11521 [Solenop	0.621	0.814	0.491	2e-46
307177760	254	Mediator of RNA polymerase II transcript	0.621	0.814	0.483	6e-46
340712453	255	PREDICTED: mediator of RNA polymerase II	0.636	0.831	0.477	7e-46
307214805	254	Mediator of RNA polymerase II transcript	0.621	0.814	0.487	8e-46
350399776	255	PREDICTED: mediator of RNA polymerase II	0.636	0.831	0.477	9e-46

>gi|242007236|ref|XP_002424448.1| mediator complex subunit, putative [Pediculus humanus corporis] gi|212507848|gb|EEB11710.1| mediator complex subunit, putative [Pediculus humanus corporis]

 Score =  218 bits (555), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 124/247 (50%), Positives = 160/247 (64%), Gaps = 35/247 (14%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAK-----------KKQEAHNHLQKTVVYFNKNEVVKQS 152
           M+S N+ST +KLLSLIDD+EL+AK           +K  +  H Q T +   K++ +K++
Sbjct: 1   MASGNVSTRDKLLSLIDDMELIAKELIENTITLRHQKMSSAEHFQLTELLVMKDKEIKET 60

Query: 153 FRI-EIEEFTKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
             +   +   +K      A  E    +   +        +  ATAIFQAKQKL SI KAN
Sbjct: 61  LALGRRQALVEKKMETLKAEVERHDQEIRNLQRQLKEGEQILATAIFQAKQKLASIAKAN 120

Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
           KRPV SEELIK+AHRIS+SNAVCAPLTWQ GDPRRPYPTDIEMR+GFLGRL+D PLNGHL
Sbjct: 121 KRPVLSEELIKFAHRISASNAVCAPLTWQQGDPRRPYPTDIEMRLGFLGRLSDLPLNGHL 180

Query: 268 LPQQSLGDLHRT--------PSELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRE 313
           L QQ+L D HRT        P+  SQ NQF+WH SG++H+     G+V +D +   +++E
Sbjct: 181 LQQQNLSDFHRTGHSAGGEPPA--SQSNQFAWHPSGEIHMSVGNQGSVAMDTR---NHKE 235

Query: 314 SEDVEVM 320
           +EDVEVM
Sbjct: 236 AEDVEVM 242

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077876|ref|XP_972781.1| PREDICTED: similar to AGAP004063-PA [Tribolium castaneum]

 Score =  211 bits (538), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 125/243 (51%), Positives = 164/243 (67%), Gaps = 29/243 (11%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAKKKQE---AHNHL--------QKTVVYFNKNEVVKQS 152
           MSS+ +ST EKLL ++DDIEL++K+  E   A  HL        Q T +   KN  + ++
Sbjct: 1   MSSQ-MSTKEKLLYILDDIELISKEIIENSIAPKHLKLSGPEYAQLTELLVAKNTELTET 59

Query: 153 FRIEIEEF-TKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
            ++  E+    K  +   A  E    D + + +    + +  ATAI+QA QKLQSI++AN
Sbjct: 60  LKLAAEQAQIDKKMDILKAEVERQDNDINNLQKQLKEAEQILATAIYQANQKLQSISRAN 119

Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
           KRPVSSEELIK+AHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G LGRL   P+NGHL
Sbjct: 120 KRPVSSEELIKFAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGLLGRLMSDPINGHL 179

Query: 268 LPQQ-SLGDLHRT--PSEL--SQQNQFSWH-SGDMHI----GNVPLDRQQQNSNRESEDV 317
           L QQ SL DLHR   P E+  +QQNQF+WH SG++H+    G+VP+D   +N  +E+EDV
Sbjct: 180 LQQQNSLSDLHRQGHPGEIPAAQQNQFAWHPSGEIHMSVGQGSVPMDT--RNHKQETEDV 237

Query: 318 EVM 320
           EVM
Sbjct: 238 EVM 240

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002269|gb|EEZ98716.1| hypothetical protein TcasGA2_TC001257 [Tribolium castaneum]

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 160/238 (67%), Gaps = 28/238 (11%)

Query: 109 ISTGEKLLSLIDDIELVAKKKQE---AHNHL--------QKTVVYFNKNEVVKQSFRIEI 157
           +ST EKLL ++DDIEL++K+  E   A  HL        Q T +   KN  + ++ ++  
Sbjct: 1   MSTKEKLLYILDDIELISKEIIENSIAPKHLKLSGPEYAQLTELLVAKNTELTETLKLAA 60

Query: 158 EEF-TKKSKNASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVS 212
           E+    K  +   A  E    D + + +    + +  ATAI+QA QKLQSI++ANKRPVS
Sbjct: 61  EQAQIDKKMDILKAEVERQDNDINNLQKQLKEAEQILATAIYQANQKLQSISRANKRPVS 120

Query: 213 SEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQ- 271
           SEELIK+AHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G LGRL   P+NGHLL QQ 
Sbjct: 121 SEELIKFAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGLLGRLMSDPINGHLLQQQN 180

Query: 272 SLGDLHRT--PSEL--SQQNQFSWH-SGDMHI----GNVPLDRQQQNSNRESEDVEVM 320
           SL DLHR   P E+  +QQNQF+WH SG++H+    G+VP+D   +N  +E+EDVEVM
Sbjct: 181 SLSDLHRQGHPGEIPAAQQNQFAWHPSGEIHMSVGQGSVPMDT--RNHKQETEDVEVM 236

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789323|dbj|BAH71292.1| ACYPI008468 [Acyrthosiphon pisum]

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 154/239 (64%), Gaps = 26/239 (10%)

Query: 106 SKNISTGEKLLSLIDDIELVAKKKQE------------AHNHLQKTVVYFNKNEVVKQSF 153
           S N ST +KLL L+DD EL++++  E             H  L    +    NE+ K + 
Sbjct: 2   SANTSTRDKLLGLLDDFELLSRELIENLSAGRQQKINVQHQLLLTEQLVATDNEI-KATL 60

Query: 154 RI-EIEEFTKKSKNASTAGFE--DAHGVWESASGSNKNE---ATAIFQAKQKLQSINKAN 207
           ++ E +   +K  NA     E  D H + +      + E   ATA+FQAKQKLQSINKA+
Sbjct: 61  KVAEHQAEVEKKVNAIKEEIETQDQH-ITQMQKHFKEAENILATALFQAKQKLQSINKAS 119

Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
           K PVSSE+LIKYAHRIS+SNAVCAPLTWQPGD RRPYPTDIEMR+G+LGRL+D PLNGH+
Sbjct: 120 KHPVSSEDLIKYAHRISASNAVCAPLTWQPGDARRPYPTDIEMRMGYLGRLSDLPLNGHI 179

Query: 268 LPQQSLGDLHRTPSEL----SQQNQFSWHS-GDMHIG-NVPLDRQQQNSNRESEDVEVM 320
           +  Q L D+ R+ +++    SQQNQF+WHS GDMH+G    +   + +S   +EDVEVM
Sbjct: 180 MQPQGLADIVRSNNQIDRQASQQNQFAWHSTGDMHLGVGSGVIDTRNHSKDVAEDVEVM 238

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193620211|ref|XP_001950035.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4-like [Acyrthosiphon pisum]

 Score =  197 bits (502), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 118/239 (49%), Positives = 154/239 (64%), Gaps = 26/239 (10%)

Query: 106 SKNISTGEKLLSLIDDIELVAKKKQE------------AHNHLQKTVVYFNKNEVVKQSF 153
           S N ST +KLL L+DD EL++++  E             H  L    +    NE+ K + 
Sbjct: 2   SANTSTRDKLLGLLDDFELLSRELIENLSAGRQQKINVQHQLLLTEQLVATDNEI-KATL 60

Query: 154 RI-EIEEFTKKSKNASTAGFE--DAHGVWESASGSNKNE---ATAIFQAKQKLQSINKAN 207
           ++ E +   +K  NA     E  D H + +      + E   ATA+FQAKQKLQSINKA+
Sbjct: 61  KVAEHQAEVEKKVNAIKEEIETQDQH-ITQMQKHFKEAENILATALFQAKQKLQSINKAS 119

Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
           K PVSSE+LIKYAHRIS+SNAVCAPLTWQPGD RRPYPTDIEMR+G+LGRL+D PLNGH+
Sbjct: 120 KHPVSSEDLIKYAHRISASNAVCAPLTWQPGDARRPYPTDIEMRMGYLGRLSDLPLNGHI 179

Query: 268 LPQQSLGDLHRTPSEL----SQQNQFSWHS-GDMHIG-NVPLDRQQQNSNRESEDVEVM 320
           +  Q L D+ R+ +++    SQQNQF+WHS GDMH+G    +   + +S   +EDVEVM
Sbjct: 180 MQPQGLADIVRSNNQIDRQASQQNQFAWHSTGDMHLGVGSGVIDTRNHSKDVAEDVEVM 238

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786080|gb|EFZ12691.1| hypothetical protein SINV_11521 [Solenopsis invicta]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/240 (49%), Positives = 149/240 (62%), Gaps = 33/240 (13%)

Query: 110 STGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
           ST E LLSL+DDIEL+AK+           K  +  H Q T +   K+   K + +   E
Sbjct: 6   STREVLLSLVDDIELIAKEMIENTIAQKPSKLSSTEHAQLTELLVAKDNEFKATLKRAAE 65

Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
           +     K  A  A  E    D   +      + +  ATAI+QAKQKLQSI +ANKRPVSS
Sbjct: 66  QAKINLKMEALRAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVSS 125

Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS- 272
           EELIKYAHRIS++NA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG LL     
Sbjct: 126 EELIKYAHRISATNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQLLGSHPG 185

Query: 273 -LGDLHRT--PS---ELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
              DLHR   P+    +SQ NQF+WH SG++H+     G+V ++  +Q    E+EDVEVM
Sbjct: 186 IPSDLHRAGHPAGEPPVSQSNQFAWHPSGEIHMSVGGQGSVAVNTHKQ----ETEDVEVM 241

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177760|gb|EFN66757.1| Mediator of RNA polymerase II transcription subunit 4 [Camponotus floridanus]

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/240 (48%), Positives = 149/240 (62%), Gaps = 33/240 (13%)

Query: 110 STGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQSFRIEIE 158
           ST E LLSL+DDIEL+AK+           K  +  H Q T +   K+  +K + +   E
Sbjct: 6   STREVLLSLVDDIELIAKEMIENTIAQKPSKLSSTEHTQLTELLVAKDNELKATLKRAAE 65

Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
           +     K  A  A  E    D   +      + +  ATAI+QAKQKLQSI +ANKRPV S
Sbjct: 66  QAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVPS 125

Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS- 272
           EELIKYAHRIS++NA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG L+     
Sbjct: 126 EELIKYAHRISATNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQLIGSHPG 185

Query: 273 -LGDLHRT--PS---ELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
              DLHR   P+    +SQ NQF+WH SG++H+     G+V ++  +Q    E+EDVEVM
Sbjct: 186 IPSDLHRAGHPAGEPPVSQSNQFAWHPSGEIHMSVSGQGSVAVNTHKQ----ETEDVEVM 241

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712453|ref|XP_003394774.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4-like [Bombus terrestris]

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 150/247 (60%), Gaps = 35/247 (14%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQS 152
           M+S + ST E LLS++DDIEL+AK+           K     H Q T +   K+  +K  
Sbjct: 1   MTSTSKSTKEVLLSIVDDIELIAKEMIENTIVQKPLKLSNEEHSQLTELLIAKDNELKAI 60

Query: 153 FRIEIEEFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
            +   E+     K  A  A  E    D   +      + +  ATAI+QAKQKLQSI +AN
Sbjct: 61  LKRAAEQAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARAN 120

Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
           KRPV SEELIKYAHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG  
Sbjct: 121 KRPVPSEELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQ- 179

Query: 268 LPQQSLG---DLHRT-----PSELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRE 313
           +P    G   DLHR         +SQ NQF+WH SG++H+     G+V ++  +Q    E
Sbjct: 180 MPGTHPGISSDLHRPGHPVGEPPMSQANQFAWHSSGEIHMSVSGQGSVAMNTHKQ----E 235

Query: 314 SEDVEVM 320
           +EDVEVM
Sbjct: 236 TEDVEVM 242

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214805|gb|EFN89692.1| Mediator of RNA polymerase II transcription subunit 4 [Harpegnathos saltator]

 Score =  190 bits (482), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 117/240 (48%), Positives = 148/240 (61%), Gaps = 33/240 (13%)

Query: 110 STGEKLLSLIDDIELVAKKKQEAH-----------NHLQKTVVYFNKNEVVKQSFRIEIE 158
           ST E LLSLIDDIEL+AK+  E              H Q T +   K+  +K + +   E
Sbjct: 6   STKEVLLSLIDDIELIAKEMIENTIAQKPAKLSNIEHAQLTELLVAKDNELKSTLKRAAE 65

Query: 159 EFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
           +     K  A  A  E    D   +      + +  ATAI+QAKQKLQSI +ANKRPV+S
Sbjct: 66  QAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARANKRPVAS 125

Query: 214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS- 272
           EELIKYAHRIS++NA+CAPL+WQ GDPRRPYPTDIEMR+G LGRLND PLNG +L     
Sbjct: 126 EELIKYAHRISATNAICAPLSWQQGDPRRPYPTDIEMRLGCLGRLNDVPLNGQMLGSHPS 185

Query: 273 -LGDLHRT--PS---ELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRESEDVEVM 320
              DLHR   P+    +SQ NQF+WH SG++H+     G+V ++  +Q    E+EDVEVM
Sbjct: 186 IPSDLHRAGHPAGEPPVSQSNQFAWHPSGEIHMSVGGQGSVAVNTHKQ----ETEDVEVM 241

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399776|ref|XP_003485635.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4-like [Bombus impatiens]

 Score =  190 bits (482), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 118/247 (47%), Positives = 150/247 (60%), Gaps = 35/247 (14%)

Query: 104 MSSKNISTGEKLLSLIDDIELVAKK-----------KQEAHNHLQKTVVYFNKNEVVKQS 152
           M+S + ST E LLS++DDIEL+AK+           K     H Q T +   K+  +K  
Sbjct: 1   MTSTSKSTKEVLLSIVDDIELIAKEMIENTIVQKPLKLSNEEHSQLTELLIAKDNELKAI 60

Query: 153 FRIEIEEFTKKSK-NASTAGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKAN 207
            +   E+     K  A  A  E    D   +      + +  ATAI+QAKQKLQSI +AN
Sbjct: 61  LKRAAEQAKINLKMEALKAEVERQDQDIQQLQRQLKEAEQILATAIYQAKQKLQSIARAN 120

Query: 208 KRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHL 267
           KRPV SEELIKYAHRIS+SNA+CAPLTWQ GDPRRPYPTDIEMR+G+LGRL+D PLNG  
Sbjct: 121 KRPVPSEELIKYAHRISASNAICAPLTWQQGDPRRPYPTDIEMRLGYLGRLSDLPLNGQ- 179

Query: 268 LPQQSLG---DLHRT-----PSELSQQNQFSWH-SGDMHI-----GNVPLDRQQQNSNRE 313
           +P    G   DLHR         +SQ NQF+WH SG++H+     G+V ++  +Q    E
Sbjct: 180 MPGTHPGISSDLHRPGHPVGEPPVSQANQFAWHSSGEIHMSVSGQGSVAMNTHKQ----E 235

Query: 314 SEDVEVM 320
           +EDVEVM
Sbjct: 236 TEDVEVM 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
FB|FBgn0035754	258	MED4 "Mediator complex subunit	0.546	0.705	0.477	9.2e-36
MGI|MGI:1914631	270	Med4 "mediator of RNA polymera	0.327	0.403	0.594	5e-35
RGD|1306671	270	Med4 "mediator complex subunit	0.327	0.403	0.594	5e-35
UNIPROTKB|F1PQ09	271	MED4 "Uncharacterized protein"	0.327	0.402	0.586	1.7e-34
UNIPROTKB|Q9NPJ6	270	MED4 "Mediator of RNA polymera	0.327	0.403	0.586	1.7e-34
UNIPROTKB|Q3SYZ9	270	MED4 "Mediator of RNA polymera	0.327	0.403	0.586	2.1e-34
UNIPROTKB|F1NV91	283	MED4 "Uncharacterized protein"	0.327	0.385	0.586	4.4e-34
ZFIN|ZDB-GENE-050417-438	262	med4 "mediator complex subunit	0.327	0.416	0.568	4.9e-33
UNIPROTKB|B4DX67	224	MED4 "Mediator of RNA polymera	0.327	0.486	0.586	2.3e-30
UNIPROTKB|Q5T911	238	MED4 "Mediator of RNA polymera	0.327	0.457	0.586	2.3e-30

FB|FBgn0035754 MED4 "Mediator complex subunit 4" [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
 Identities = 96/201 (47%), Positives = 125/201 (62%)

Query:   106 SKNISTGEKLLSLIDDIELVAKKK-QEAHNHLQKT-VVYFNKNEVVK-QSFR--IEIEEF 160
             S ++ST E+LL LIDDIE++AK+  ++AH  +  T +V      V K + FR  +E+ E 
Sbjct:     2 SFHLSTKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRKMLELAEE 61

Query:   161 TKKSKNAST---AGFE----DAHGVWESASGSNKNEATAIFQAKQKLQSINKANKRPVSS 213
               K + A     A  E    +   + +S   +    +TAIFQA+QKL SIN+ANKRPVSS
Sbjct:    62 QAKVEEAMDQLRAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKRPVSS 121

Query:   214 EELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQSL 273
             EELIKYAHRISS+NAV APLTW  GD RRPYPTDIEMR G LG+ ++  +NG  +  Q+ 
Sbjct:   122 EELIKYAHRISSANAVSAPLTWCIGDLRRPYPTDIEMRNGLLGK-SEQNINGGTVTHQNS 180

Query:   274 GDLHRTPSELSQQNQFSWHSG 294
             G     PSE  QQ   S  +G
Sbjct:   181 G----MPSE--QQRTLSGSAG 195

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0016592 "mediator complex" evidence=ISS;IDA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISS;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

MGI|MGI:1914631 Med4 "mediator of RNA polymerase II transcription, subunit 4 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 69/116 (59%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:   122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   S +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   182 MRSGLLGQMNNPSTSGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSVNMLP 233

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0004872 "receptor activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISO

GO:0016592 "mediator complex" evidence=ISO;ISA;IDA

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0046966 "thyroid hormone receptor binding" evidence=ISO

RGD|1306671 Med4 "mediator complex subunit 4" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 69/116 (59%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:   122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   S +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   182 MRSGLLGQMNNPSTSGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSVNMLP 233

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;ISO

GO:0003712 "transcription cofactor activity" evidence=ISO

GO:0004872 "receptor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0016592 "mediator complex" evidence=IEA;ISO

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0030521 "androgen receptor signaling pathway" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0046966 "thyroid hormone receptor binding" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1PQ09 MED4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 68/116 (58%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:   123 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 182

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   + +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   183 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 234

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9NPJ6 MED4 "Mediator of RNA polymerase II transcription subunit 4" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 68/116 (58%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:   122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   + +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   182 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 233

GO:0030521 "androgen receptor signaling pathway" evidence=IDA

GO:0046966 "thyroid hormone receptor binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0004872 "receptor activity" evidence=IDA

GO:0030518 "intracellular steroid hormone receptor signaling pathway" evidence=IDA

GO:0003712 "transcription cofactor activity" evidence=IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA;TAS

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=NAS

GO:0042809 "vitamin D receptor binding" evidence=NAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0016592 "mediator complex" evidence=IDA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q3SYZ9 MED4 "Mediator of RNA polymerase II transcription subunit 4" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
 Identities = 68/116 (58%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:   122 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 181

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   + +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   182 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMAMNMLP 233

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F1NV91 MED4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 335 (123.0 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 68/116 (58%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:   135 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 194

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   + +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   195 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSSDMSMNMLP 246

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0046966 "thyroid hormone receptor binding" evidence=IEA

ZFIN|ZDB-GENE-050417-438 med4 "mediator complex subunit 4" [Danio rerio (taxid:7955)]

 Score = 324 (119.1 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 66/116 (56%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI+KA K  +SSEE+IKYAHRIS+SNAVCAPL W PGDPRRPYPTD+E
Sbjct:   114 ATAVYQAKEKLKSIDKARKGSISSEEIIKYAHRISASNAVCAPLNWVPGDPRRPYPTDLE 173

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG +++   + +NGHL P  +L    R P  L+ Q  + W S D+ +G +P
Sbjct:   174 MRSGMLGNMSNMSTNGVNGHL-PGDALA-AGRLPDVLTPQ--YPWQSTDVSMGILP 225

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|B4DX67 MED4 "Mediator of RNA polymerase II transcription subunit 4" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 68/116 (58%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:    76 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 135

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   + +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   136 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 187

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

UNIPROTKB|Q5T911 MED4 "Mediator of RNA polymerase II transcription subunit 4" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 68/116 (58%), Positives = 86/116 (74%)

Query:   190 ATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPYPTDIE 249
             ATA++QAK+KL+SI KA K  +SSEE+IKYAHRIS+SNAVCAPLTW PGDPRRPYPTD+E
Sbjct:   100 ATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLE 159

Query:   250 MRVGFLGRLND---SPLNGHLLPQQSLGDLHRTPSELSQQNQFSWHSGDMHIGNVP 302
             MR G LG++N+   + +NGHL P  +L    R P  L+ Q  + W S DM +  +P
Sbjct:   160 MRSGLLGQMNNPSTNGVNGHL-PGDALA-AGRLPDVLAPQ--YPWQSNDMSMNMLP 211

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VS38	MED4_DROME	No assigned EC number	0.4	0.6126	0.7906	yes	N/A
Q9CQA5	MED4_MOUSE	No assigned EC number	0.4033	0.6216	0.7666	yes	N/A
Q561Q8	MED4_RAT	No assigned EC number	0.4033	0.6216	0.7666	yes	N/A
Q9NPJ6	MED4_HUMAN	No assigned EC number	0.3991	0.6216	0.7666	yes	N/A
Q3SYZ9	MED4_BOVIN	No assigned EC number	0.4033	0.6216	0.7666	yes	N/A
Q5M8Y7	MED4_XENTR	No assigned EC number	0.4	0.6366	0.8412	yes	N/A
Q7QH62	MED4_ANOGA	No assigned EC number	0.4285	0.6456	0.8174	yes	N/A
Q561X3	MED4_DANRE	No assigned EC number	0.5106	0.3813	0.5	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	333
pfam10018	176	pfam10018, Med4, Vitamin-D-receptor interacting Me	1e-17

>gnl|CDD|192445 pfam10018, Med4, Vitamin-D-receptor interacting Mediator subunit 4

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 39/95 (41%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 188 NEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAV--------CAPLTWQP-- 237
            EA    +    L SINKANKR VSSEEL+KYAHRIS   +          AP  W    
Sbjct: 53  KEAEKELRTLPDLSSINKANKRKVSSEELLKYAHRISKFTSAPPTVSSGAIAPNNWIAPL 112

Query: 238 GDPRRPYPTDIEMRVGFLGRLNDSPLNGHLLPQQS 272
           GD  RP+P + EMR G L + +     G   P   
Sbjct: 113 GDLFRPWPAEDEMRRGLLAQSSLLSKEGIEPPGFD 147

Members of this family function as part of the Mediator (Med) complex, which links DNA-bound transcriptional regulators and the general transcription machinery, particularly the RNA polymerase II enzyme. They play a role in basal transcription by mediating activation or repression according to the specific complement of transcriptional regulators bound to the promoter. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
KOG4552|consensus	272		100.0
PF10018	188	Med4: Vitamin-D-receptor interacting Mediator subu	99.94
PF10417	40	1-cysPrx_C: C-terminal domain of 1-Cys peroxiredox	86.92
PF13805	271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	85.54
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	81.85
PF11221	144	Med21: Subunit 21 of Mediator complex; InterPro: I	81.3

>KOG4552|consensus

Probab=100.00  E-value=6.7e-71  Score=504.95  Aligned_cols=226  Identities=42%  Similarity=0.569  Sum_probs=197.2

Q ss_pred             ccccCccchHHHhhhhhHHHHHHHHHHHhc------------cCchhhHHHHHhcCHHHHHHHHHHHHHHhhhhhhhh--
Q psy14089        103 NMSSKNISTGEKLLSLIDDIELVAKKKQEA------------HNHLQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNAS--  168 (333)
Q Consensus       103 ~Mas~~~S~re~LL~~lDDlE~lsKeLie~------------~~~~qliElLl~KD~eLk~~Lk~A~qahQe~~k~i~--  168 (333)
                      +|+. ++||||+||.++||||.|+|+|||+            ++.-++++||+.||.+|+++|++|+ +++|++..++  
T Consensus         2 ~~t~-~~StrerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~-eq~k~e~~m~~L   79 (272)
T KOG4552|consen    2 AETD-ERSTRERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAP-EQQKREQLMRTL   79 (272)
T ss_pred             Cccc-cccHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhH-hHHHHHHHHHHH
Confidence            4555 9999999999999999999999997            4666999999999999999999999 7777776655  


Q ss_pred             hHHHHHH---HHHHHH-hhhhhHHHHHHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHhhccccccCCCCCCCCCCCCCC
Q psy14089        169 TAGFEDA---HGVWES-ASGSNKNEATAIFQAKQKLQSINKANKRPVSSEELIKYAHRISSSNAVCAPLTWQPGDPRRPY  244 (333)
Q Consensus       169 Q~eIEqk---I~~Le~-LKeAE~~L~taI~QAkqKLkSI~kAek~pVssEeLIkYAHrISasnaVsAPl~WqpGdPrRPy  244 (333)
                      .+++|++   ||+|++ ||+||++|+++||||++||++|++|+||||++|+|||||||||++|+||||++|++|||||||
T Consensus        80 ea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvsSEelIKyAHrIS~~NaVsAPLTW~~GDprRPy  159 (272)
T KOG4552|consen   80 EAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVSSEELIKYAHRISKHNAVSAPLTWQMGDPRRPY  159 (272)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhcccccCccccccCCCCCCC
Confidence            4456665   888876 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHhhhhccc----ccCCC---CCCCCCCCCCC---------ccccccCCCc--ccccCccccccCCccc--------
Q psy14089        245 PTDIEMRVGFLG----RLNDS---PLNGHLLPQQS---------LGDLHRTPSE--LSQQNQFSWHSGDMHI--------  298 (333)
Q Consensus       245 PtE~eMR~G~Lg----~l~~~---~iNGh~~p~~~---------~~d~~r~g~~--~~~~~qf~W~s~~~~m--------  298 (333)
                      |||+|||+|+||    .+++.   ..||| +|--+         .+|+--+||+  .+.++||.|+++++||        
T Consensus       160 Ptd~EmR~GLlGk~~~~in~ps~s~~Ngg-~P~~~~~tl~gsA~tg~~sgagg~~P~~~q~Q~~Wq~~~~~m~m~~p~~s  238 (272)
T KOG4552|consen  160 PTDHEMRAGLLGKQRPLINSPSASSSNGG-APIRTVGTLIGSAPTGDFSGAGGDEPPPIQQQVLWQNSPYNMVMQSPSSS  238 (272)
T ss_pred             CchhHHhccCccccccccCCCCcCCCCCC-CCchhhccccccCCCCCccccCCCCCchhhhhccccCCcchhhccCCCCC
Confidence            999999999999    66655   56777 66111         1333333444  8999999999999999        


Q ss_pred             cCccCCccccCCCC-CCccceeeecCCCCCCCCCCC
Q psy14089        299 GNVPLDRQQQNSNR-ESEDVEVMSTDSSSSSSSDSQ  333 (333)
Q Consensus       299 ~~~~l~~~~~~~~~-~~eDVEvMStDSsSssSSDSq  333 (333)
                      .+|.|++.|  +++ ++||||+||||||||||||++
T Consensus       239 ~~v~Le~~g--~~~~~qDDVE~MStDSSsSSSsdd~  272 (272)
T KOG4552|consen  239 PNVKLEITG--GIDQVQDDVEQMSTDSSSSSSSDDE  272 (272)
T ss_pred             CCeeeecCC--CcccchhhHHHhccCCCCcccccCC
Confidence            458899988  666 999999999999999999975

>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=99.94  E-value=1.5e-26  Score=202.64  Aligned_cols=129  Identities=30%  Similarity=0.407  Sum_probs=111.6

Q ss_pred             hhHHHHHhcCHHHHHHHHHHHHHHhhhhhhhhhH-----HHHHHHHHH-HHhhhhhHHHHHHHHHHHHhHHHHHHhcCCC
Q psy14089        137 QKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTA-----GFEDAHGVW-ESASGSNKNEATAIFQAKQKLQSINKANKRP  210 (333)
Q Consensus       137 qliElLl~KD~eLk~~Lk~A~qahQe~~k~i~Q~-----eIEqkI~~L-e~LKeAE~~L~taI~QAkqKLkSI~kAek~p  210 (333)
                      ++++.|+.+|.+|+++|+.+. .||++.++|.+-     .++.+|..+ ..|++|+..|.+++++++.|++++.++++++
T Consensus         2 ~~~~~L~~~d~~L~~~L~~l~-~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~   80 (188)
T PF10018_consen    2 ELAEDLIEADDELSSALEELQ-EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEKLKSIPKAEKRP   80 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Confidence            578999999999999999998 899977755522     222234444 2399999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhccccc--------cCCCCCC----CCCCCCCCCchHHhhhhcccccCCCCCCCC
Q psy14089        211 VSSEELIKYAHRISSSNAV--------CAPLTWQ----PGDPRRPYPTDIEMRVGFLGRLNDSPLNGH  266 (333)
Q Consensus       211 VssEeLIkYAHrISasnaV--------sAPl~Wq----pGdPrRPyPtE~eMR~G~Lg~l~~~~iNGh  266 (333)
                      |++++||+||||||+++++        ++|.+|+    .|++.+|||+|++||+|.|+++......|-
T Consensus        81 v~~~eLL~YA~rISk~t~~p~~~~~~~~~P~~~~~~~~~~~~~~PwP~Ed~mR~G~L~~~~~~~~~~~  148 (188)
T PF10018_consen   81 VDYEELLSYAHRISKFTSAPPTFPSGSIAPNNWQPGPPSGDFFRPWPQEDQMRRGMLAQLQLLAEEGI  148 (188)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCCCCcCCcccccccccccccCCCCCHHHHHHhHHHhhhhhhhcCC
Confidence            9999999999999999888        8899999    677779999999999999999988766554

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []

Probab=86.92  E-value=0.38  Score=34.03  Aligned_cols=30  Identities=27%  Similarity=0.630  Sum_probs=22.4

Q ss_pred             HhhccccccCCCCCCCCCCC--CCCCchHHhh
Q psy14089        222 RISSSNAVCAPLTWQPGDPR--RPYPTDIEMR  251 (333)
Q Consensus       222 rISasnaVsAPl~WqpGdPr--RPyPtE~eMR  251 (333)
                      +.+..+.+..|-+|+|||+-  +|-++.++..
T Consensus         3 Q~~d~~~v~tPanW~pGd~~ivpp~~s~~~a~   34 (40)
T PF10417_consen    3 QFTDKHGVATPANWKPGDDVIVPPPVSQEEAK   34 (40)
T ss_dssp             HHHHHHSSBBCTTTCTTSGEBE-TTSSTTHHH
T ss_pred             eehhhhCcccCcCCCCCCCeEcCCCCCHHHHH
Confidence            45566679999999999995  7777776543

The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B

Probab=85.54  E-value=17  Score=35.47  Aligned_cols=40  Identities=33%  Similarity=0.514  Sum_probs=17.6

Q ss_pred             HHhcCCCCChHHHHHHHHHhhccccccCCCCC-CCCCCCCCCCchHHhh
Q psy14089        204 NKANKRPVSSEELIKYAHRISSSNAVCAPLTW-QPGDPRRPYPTDIEMR  251 (333)
Q Consensus       204 ~kAek~pVssEeLIkYAHrISasnaVsAPl~W-qpGdPrRPyPtE~eMR  251 (333)
                      +.|||..|    |-.|+.+|-.-  +  |.+. +||+++|||.....-|
T Consensus       209 E~aEK~~I----la~~gk~Ll~l--l--dd~pv~PG~~r~~Y~g~~~t~  249 (271)
T PF13805_consen  209 ERAEKQAI----LAEYGKRLLEL--L--DDTPVVPGDTRPPYDGYEQTR  249 (271)
T ss_dssp             HHHHHHHH----HHHHHHHHHTT--S--------TTS-------HHHHH
T ss_pred             HHHHHHHH----HHHHHHHHHHh--c--cCCCCCCCCCCCCCCChhHHH
Confidence            44666655    66777777652  2  6666 4999999998766543

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=81.85  E-value=11  Score=32.62  Aligned_cols=86  Identities=13%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             hhhHHHHHhcCHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--------------------hhhhhHHHHHHHHH
Q psy14089        136 LQKTVVYFNKNEVVKQSFRIEIEEFTKKSKNASTAGFEDAHGVWES--------------------ASGSNKNEATAIFQ  195 (333)
Q Consensus       136 ~qliElLl~KD~eLk~~Lk~A~qahQe~~k~i~Q~eIEqkI~~Le~--------------------LKeAE~~L~taI~Q  195 (333)
                      .|+...|.++.+.+...+..|++.-++-..  ...+.++++...+.                    +.+|+..++..+.+
T Consensus        45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~--~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~  122 (156)
T CHL00118         45 KPLLKVLDERKEYIRKNLTKASEILAKANE--LTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNE  122 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347888888888888888888833222222  22222222222211                    67777777777777


Q ss_pred             HHHhHHHHHHhcCCCCChHHHHHHHHHhh
Q psy14089        196 AKQKLQSINKANKRPVSSEELIKYAHRIS  224 (333)
Q Consensus       196 AkqKLkSI~kAek~pVssEeLIkYAHrIS  224 (333)
                      |++.++...+.....+. .++...|..|+
T Consensus       123 a~~~i~~ek~~a~~~l~-~~v~~lA~~ia  150 (156)
T CHL00118        123 ATKQLEAQKEKALKSLE-EQVDTLSDQIE  150 (156)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            77777776665555443 23555555554

>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=81.30  E-value=35  Score=29.51  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=28.5

Q ss_pred             HHHHHHHH-hhhhhHHHHHHHHHHHHhHHHHHHh
Q psy14089        174 DAHGVWES-ASGSNKNEATAIFQAKQKLQSINKA  206 (333)
Q Consensus       174 qkI~~Le~-LKeAE~~L~taI~QAkqKLkSI~kA  206 (333)
                      ++|..|+. +++++..|..+|..+++.|+.++.+
T Consensus       104 ~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~  137 (144)
T PF11221_consen  104 KRIKELEEENEEAEEELQEAVKEAEELLKQVQEL  137 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778865 9999999999999999999988764

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
3plt_A	234	Sphingolipid long chain base-responsive protein L;	87.16
1ykh_B	132	RNA polymerase II holoenzyme component SRB7; gene	81.3
2pih_A	151	Protein YMCA; regulate community development, stru	80.88

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}

Probab=87.16  E-value=15  Score=33.84  Aligned_cols=40  Identities=18%  Similarity=0.236  Sum_probs=27.7

Q ss_pred             HHhcCCCCChHHHHHHHHHhhccccccCCCCCC-CCCCCCCCCchHHhh
Q psy14089        204 NKANKRPVSSEELIKYAHRISSSNAVCAPLTWQ-PGDPRRPYPTDIEMR  251 (333)
Q Consensus       204 ~kAek~pVssEeLIkYAHrISasnaVsAPl~Wq-pGdPrRPyPtE~eMR  251 (333)
                      +.|+|..|    |-.|+.+|-.-  +  |.+.. ||++||||.....-|
T Consensus       175 E~aEK~~i----la~~gk~Ll~l--l--dd~pv~PG~~r~~Y~g~~~t~  215 (234)
T 3plt_A          175 ELSEKFAL----IAGYGKALLEL--L--DDSPVTPGEARPAYDGYEASR  215 (234)
T ss_dssp             HHHHHHHH----HHHHHHHHHTT--S--CCCCCCSSSCCCCCCCHHHHH
T ss_pred             HHHHHHHH----HHHHHHHHHHh--c--CCCCCCCCCCCCCCCChhHHH
Confidence            44666554    66778777752  2  66655 899999999877654

>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1

Probab=81.30  E-value=17  Score=30.30  Aligned_cols=34  Identities=6%  Similarity=0.094  Sum_probs=29.1

Q ss_pred             HHHHHHHHH-hhhhhHHHHHHHHHHHHhHHHHHHh
Q psy14089        173 EDAHGVWES-ASGSNKNEATAIFQAKQKLQSINKA  206 (333)
Q Consensus       173 EqkI~~Le~-LKeAE~~L~taI~QAkqKLkSI~kA  206 (333)
                      .++|..|++ +++++..|..+|..|+..|+.++.+
T Consensus        91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~  125 (132)
T 1ykh_B           91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM  125 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345888865 9999999999999999999998764

>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1

Probab=80.88  E-value=14  Score=30.95  Aligned_cols=86  Identities=9%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             hhhhHHHHHHHHHHHhccCc--hhhHHHHHhcCHHHHHHHHHHH---HHHhhhhhhhh---hHHHHHHHHHHHH------
Q psy14089        116 LSLIDDIELVAKKKQEAHNH--LQKTVVYFNKNEVVKQSFRIEI---EEFTKKSKNAS---TAGFEDAHGVWES------  181 (333)
Q Consensus       116 L~~lDDlE~lsKeLie~~~~--~qliElLl~KD~eLk~~Lk~A~---qahQe~~k~i~---Q~eIEqkI~~Le~------  181 (333)
                      ..++|.++.|++.|-++++.  -.-.+.-+..|++++++++.-.   +.|+..++-.+   -.++.++++.+.+      
T Consensus         7 ~~I~d~A~eL~~aI~eseeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~np   86 (151)
T 2pih_A            7 KDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEEIP   86 (151)
T ss_dssp             HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHcCH
Confidence            34667777778878777633  3444566778888888766554   33333332221   1233334444433      


Q ss_pred             ----hhhhhHHHHHHHHHHHHhHH
Q psy14089        182 ----ASGSNKNEATAIFQAKQKLQ  201 (333)
Q Consensus       182 ----LKeAE~~L~taI~QAkqKLk  201 (333)
                          +++||..|...+..-.+.+.
T Consensus        87 ~V~~y~~Ae~~l~~LL~~I~~iI~  110 (151)
T 2pih_A           87 VIQEFRDSQMEVNDLLQLVAHTIS  110 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                88899988888877776553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00