Psyllid ID: psy14210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPPGGGDH
Secondary Structure (PSIPRED)
cccccccEEEEEEcccEEEEEccccccccEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEcccccEEccccccEEEEEccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEcccccEEEEEcccccEEEccEEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccccEEEEccccHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccEEEEEEccEEEEEEcccEEEccEEEEcccccccccccccHHHHHcccccccccccccccccccccEEEEEcccccEEEEEEEEEEEEccccEEEEEEEcccEEEEEEccccEEEcccEEEEEEEcHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHcccccEEEEEEEEEcccEEEEEEEEccccEEEEcEEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHEcccccEEEEEEEEccEEEEEEEEEHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mfitgtttlgfrypegiilatdsratANDLIVSQKLNKFcqsslgdscellhpvytggercgqsysqrshcvaetqqdhflspplsqssqhiisgdscellhpvytggercgpfsqsstvphntsfqvipvSSSILCTLAGNAADCVYWLHSLAKEckgyeckyrtgmTIRHAANLLVNMVRKyrtgnhsskipnglsfGTLMAAYDEilgpqlymldntglliegtkfcvgsGAEYAQAIldtdyrpdlseEEAYALATSAIYHACRrdihsggcvrlykingqgWQQVLSRDVKDIyndrkeappgggdh
Flexible Loop (DISEMBL)
mfitgtttlgfrypeGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNdrkeappgggdh
Low Complexity Region (SEG)
MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPPGGGDH
Disordered region (IsUnstruct)
**ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY**************************IISGDSCELLHPVYTGGERCGPFS***TVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY*************
Disordered Region (DISOPRED)
*FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL*******SQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYN************
Disordered Region (DISEMBL)
MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF**********HIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRK*********
Disordered Region (DISPRO)
MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPPGGGDH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q54BC8	272	Proteasome subunit beta t	yes	N/A	0.679	0.779	0.341	6e-34
P34065	256	Proteasome subunit beta t	yes	N/A	0.567	0.691	0.392	1e-33
P28075	263	Proteasome subunit beta t	yes	N/A	0.586	0.695	0.401	5e-33
O55234	264	Proteasome subunit beta t	yes	N/A	0.608	0.719	0.386	6e-32
Q3T112	276	Proteasome subunit beta t	yes	N/A	0.544	0.615	0.407	2e-31
Q32KL2	263	Proteasome subunit beta t	yes	N/A	0.551	0.653	0.403	3e-31
Q5R8S2	263	Proteasome subunit beta t	yes	N/A	0.573	0.680	0.388	6e-31
P28074	263	Proteasome subunit beta t	yes	N/A	0.573	0.680	0.388	6e-31
P28064	276	Proteasome subunit beta t	no	N/A	0.544	0.615	0.407	8e-31
Q9LIP2	273	Proteasome subunit beta t	yes	N/A	0.525	0.600	0.393	3e-30

>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 25/237 (10%)

Query: 79  HFLSPP-------LSQSSQHIISGDSCELLHP------VYTGGERCGPFSQSSTVPHNTS 125
           HF  PP       L ++  H  +  + E  H       VY GG      S+S+  P+  S
Sbjct: 31  HFELPPNANPGDFLRETFDHPSAPKALEFAHGTTTLAFVYGGGIIVSVDSKSTQGPYVAS 90

Query: 126 F---QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVR 182
               +VI ++ ++L T+AG AADC +W   L + C+ YE + +  +++  A+ +L N+V 
Sbjct: 91  RSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVY 150

Query: 183 KYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
            Y+          GLS GT++  +D+  GPQLY +DN G  + G +F  GSG+ YA  +L
Sbjct: 151 SYKG--------YGLSMGTMITGWDKT-GPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVL 201

Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
           DT ++ D+++EEAY L   A+YHA  RD +SGG + +Y +   GW+++ S D   +Y
Sbjct: 202 DTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHVQKDGWKKISSDDCFKLY 258

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|P34065|PSB5_CHICK Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/186 (39%), Positives = 113/186 (60%), Gaps = 9/186 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  S +   T  +VI ++ S+L T+AG AADC +W   LA++C+ YE + +  +++  A+
Sbjct: 76  TAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAAS 135

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            LL NMV +Y+          GLS GT++  +D+  GP LY +D+ G  I G  F VGSG
Sbjct: 136 KLLANMVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGTRIPGEAFAVGSG 186

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           + YA  +LD   RPD++ +EA  LA  AI+ A RRD +SGG V +Y +  +GW++V S D
Sbjct: 187 SSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHD 246

Query: 295 VKDIYN 300
           V  +++
Sbjct: 247 VAGLHD 252

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28075|PSB5_RAT Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 114/197 (57%), Gaps = 14/197 (7%)

Query: 111 CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI 170
            GP+  S TV      +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++
Sbjct: 81  AGPYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISV 135

Query: 171 RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
             A+ LL NMV +Y+          GLS GT++  +D+  GP LY +D+ G  I GT F 
Sbjct: 136 AAASKLLANMVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGTAFS 186

Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
           VGSG+ YA  ++D  Y  DL  EEAY LA  AIY A  RD +SGG V LY +   GW +V
Sbjct: 187 VGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 246

Query: 291 LSRDVKDIYNDRKEAPP 307
            S +V D+++    + P
Sbjct: 247 SSDNVADLHDKYTSSIP 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the chymotrypsin-like activity of the proteasome and is one of the principal target of the proteasome inhibitor bortezomib (By similarity). Plays a role in the protection against oxidative damage through the Nrf2-ARE pathway.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O55234|PSB5_MOUSE Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3

 Score =  138 bits (347), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 117/207 (56%), Gaps = 17/207 (8%)

Query: 97  SCELLHPVYTGGER---CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSL 153
           + + LH V    +     G +  S TV      +VI ++  +L T+AG AADC +W   L
Sbjct: 64  AFKFLHGVIVAADSRATAGAYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLL 118

Query: 154 AKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQ 213
           A++C+ YE + +  +++  A+ LL NMV +Y+          GLS GT++  +D+  GP 
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKG--------MGLSMGTMICGWDK-RGPG 169

Query: 214 LYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHS 273
           LY +D+ G  I GT F VGSG+ YA  ++D  Y  DL  EEAY LA  AIY A  RD +S
Sbjct: 170 LYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYS 229

Query: 274 GGCVRLYKINGQGWQQVLSRDVKDIYN 300
           GG V LY +   GW +V S +V D+++
Sbjct: 230 GGAVNLYHVREDGWIRVSSDNVADLHD 256

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the chymotrypsin-like activity of the proteasome and is one of the principal target of the proteasome inhibitor bortezomib (By similarity). Plays a role in the protection against oxidative damage through the Nrf2-ARE pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q3T112|PSB8_BOVIN Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2

 Score =  136 bits (342), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 9/179 (5%)

Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           +VI ++  +L T++G AADC+YW   LAKEC+ Y  +    +++  A+ LL NM+ +YR 
Sbjct: 105 KVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRG 164

Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
                    GLS G+++  +D+  GP LY +D  G  + G  F  GSG  +A  ++D+ Y
Sbjct: 165 --------MGLSMGSMICGWDKK-GPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGY 215

Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
           RPDLS EEAY L   AI HA  RD +SGG V +Y +   GW +V S DV D+ +  +EA
Sbjct: 216 RPDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREA 274

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides (By similarity). Required for adipocyte differentiation.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q32KL2|PSB5_BOVIN Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1

 Score =  135 bits (341), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/181 (40%), Positives = 107/181 (59%), Gaps = 9/181 (4%)

Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL N
Sbjct: 85  IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144

Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           MV +Y+          GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ YA 
Sbjct: 145 MVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195

Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            ++D  Y  DL  EEAY LA  AIY A  RD +SGG V LY +   GW +V S +V D++
Sbjct: 196 GVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLH 255

Query: 300 N 300
           +
Sbjct: 256 D 256

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity). This unit is responsible of the chymotrypsin-like activity of the proteasome and is one of the principal target of the proteasome inhibitor bortezomib (By similarity). Plays a role in the protection against oxidative damage through the Nrf2-ARE pathway.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q5R8S2|PSB5_PONAB Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 9/188 (4%)

Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL N
Sbjct: 85  IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144

Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           MV +Y+          GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ YA 
Sbjct: 145 MVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195

Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V S +V D++
Sbjct: 196 GVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 255

Query: 300 NDRKEAPP 307
                + P
Sbjct: 256 EKYSGSTP 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity). This unit is responsible of the chymotrypsin-like activity of the proteasome and is one of the principal target of the proteasome inhibitor bortezomib (By similarity). Plays a role in the protection against oxidative damage through the Nrf2-ARE pathway.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28074|PSB5_HUMAN Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3

 Score =  135 bits (339), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 9/188 (4%)

Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL N
Sbjct: 85  IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144

Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           MV +Y+          GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ YA 
Sbjct: 145 MVYQYKG--------MGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195

Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V S +V D++
Sbjct: 196 GVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 255

Query: 300 NDRKEAPP 307
                + P
Sbjct: 256 EKYSGSTP 263

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This unit is responsible of the chymotrypsin-like activity of the proteasome and is one of the principal target of the proteasome inhibitor bortezomib. May catalyze basal processing of intracellular antigens. Plays a role in the protection against oxidative damage through the Nrf2-ARE pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1 SV=3

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 9/179 (5%)

Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           +VI ++  +L T++G AADC YW   LAKEC+ Y  +    +++  A+ LL NM+ +YR 
Sbjct: 105 KVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRG 164

Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
                    GLS G+++  +D+  GP LY +D+ G  + G  F  GSG  YA  ++D+ Y
Sbjct: 165 --------MGLSMGSMICGWDKK-GPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGY 215

Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
           R DLS EEAY LA  AI +A  RD +SGG V +Y +   GW +V S DV D+ +  +EA
Sbjct: 216 RQDLSPEEAYDLARRAIVYATHRDSYSGGVVNMYHMKKDGWVKVESTDVSDLLHKYREA 274

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity. This subunit is involved in antigen processing to generate class I binding peptides. Required for adipocyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1

 Score =  132 bits (332), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 9/173 (5%)

Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           ++I ++  +L T+AG AADC +W  +L  +C+ +E   +  +++  A+ LL NM+  YR 
Sbjct: 90  KIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRG 149

Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
                    GLS GT++A +DE  GP LY +DN G  ++G +F VGSG+ YA  +LD+ Y
Sbjct: 150 --------MGLSVGTMIAGWDET-GPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGY 200

Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
           + D+S EEA  LA  +IYHA  RD  SGG   +Y +  QGW ++   DV +++
Sbjct: 201 KFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGPQGWTKLSGDDVGELH 253

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
1405329	259	nurse shark LMPX [Ginglymostoma cirratum	0.698	0.841	0.377	3e-34
194885021	390	GG20051 [Drosophila erecta] gi|190659560	0.570	0.456	0.408	5e-34
194756128	314	GF13303 [Drosophila ananassae] gi|190621	0.551	0.547	0.419	6e-34
380021709	282	PREDICTED: proteasome subunit beta type-	0.573	0.634	0.428	9e-34
195489076	315	GE11586 [Drosophila yakuba] gi|194178685	0.551	0.546	0.419	1e-33
195347018	315	GM15565 [Drosophila sechellia] gi|194135	0.535	0.530	0.426	2e-33
307195303	287	Proteasome subunit beta type-5 [Harpegna	0.583	0.634	0.402	3e-33
321469684	276	hypothetical protein DAPPUDRAFT_303852 [	0.544	0.615	0.413	3e-33
328787761	282	PREDICTED: proteasome subunit beta type-	0.573	0.634	0.423	4e-33
350409192	282	PREDICTED: proteasome subunit beta type-	0.576	0.638	0.416	4e-33

>gi|1405329|dbj|BAA10935.1| nurse shark LMPX [Ginglymostoma cirratum]

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 126/236 (53%), Gaps = 18/236 (7%)

Query: 78  DHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCG---------PFSQSSTVPHNTSFQV 128
           D  L+P      Q   SGD  E+LH   T G R             +  S V   T  +V
Sbjct: 30  DFLLAPGGQHGEQESGSGDRIEILHGTTTLGFRFAHGVIVAVDSRATAGSYVASQTVKKV 89

Query: 129 IPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGN 188
           I ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL NMV +Y+   
Sbjct: 90  IEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK--- 146

Query: 189 HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRP 248
                  GLS GT++  +D+  GP LY +D+ G  + G  F VGSG+ YA  +LD  YR 
Sbjct: 147 -----GMGLSMGTMICGWDK-RGPGLYYVDSEGNRVSGQIFSVGSGSVYAYGVLDRAYRH 200

Query: 249 DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKE 304
           D+S  EAY LA  AIYHA  RD +SGG V LY +   GW ++   DV D++   K+
Sbjct: 201 DMSPTEAYELAKQAIYHATYRDAYSGGIVSLYHVKETGWVRICRDDVMDLHQKYKD 256

Source: Ginglymostoma cirratum

Species: Ginglymostoma cirratum

Genus: Ginglymostoma

Family: Ginglymostomatidae

Order: Orectolobiformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194885021|ref|XP_001976373.1| GG20051 [Drosophila erecta] gi|190659560|gb|EDV56773.1| GG20051 [Drosophila erecta]

 Score =  150 bits (380), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/196 (40%), Positives = 119/196 (60%), Gaps = 18/196 (9%)

Query: 124 TSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
           T  +++ ++  +L TLAG AADCVYW   LAKEC+ ++ +YR  MT+  AA ++ N+  +
Sbjct: 101 TMRKIVELNDYMLGTLAGGAADCVYWDRVLAKECRLHQLRYRKRMTVDTAARIICNISTE 160

Query: 184 YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243
           Y+          GL  G ++A +D+  GP+L  +D+ G+   G  F VGSG+ YA  +LD
Sbjct: 161 YKG--------MGLVMGMMLAGFDD-EGPKLIYVDSEGMRSHGQVFSVGSGSPYALGVLD 211

Query: 244 TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYN--- 300
           T YR DLS++EAY LA  AIYHA  +D +SGG VRLY IN +GW+ + + D  D+++   
Sbjct: 212 TGYRHDLSDQEAYDLARRAIYHATSKDAYSGGIVRLYHINSEGWRNICNTDCSDLHDSYC 271

Query: 301 ------DRKEAPPGGG 310
                 + K+ P  GG
Sbjct: 272 SSGCPGNEKDPPNEGG 287

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194756128|ref|XP_001960331.1| GF13303 [Drosophila ananassae] gi|190621629|gb|EDV37153.1| GF13303 [Drosophila ananassae]

 Score =  150 bits (379), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 9/181 (4%)

Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           +   T  +++ ++  +L TLAG AADCVYW   LAKEC+ ++ +YR  MT+  AA ++ N
Sbjct: 97  IGSQTMKKIVELNDYMLGTLAGGAADCVYWDRVLAKECRLHQLRYRKRMTVDTAARIICN 156

Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           +  +Y+          GL  G ++A YD+  GP+L  +D+ G+   G  F VGSG+ YA 
Sbjct: 157 ISNEYKG--------MGLVMGMMLAGYDD-EGPKLIYVDSEGMKSSGLVFSVGSGSPYAL 207

Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            +LDT YR DL+++EAY LA  AIYHA  +D +SGG VRLY IN +GW+ + + D  D++
Sbjct: 208 GVLDTGYRYDLTDQEAYDLAKRAIYHATSKDAYSGGIVRLYHINAEGWRNICNTDCADLH 267

Query: 300 N 300
           +
Sbjct: 268 D 268

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021709|ref|XP_003694700.1| PREDICTED: proteasome subunit beta type-5-like [Apis florea]

 Score =  150 bits (378), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 115/196 (58%), Gaps = 17/196 (8%)

Query: 112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
           G F  SST+      +++ ++  +L TLAG AADCVYW   LAK+C+ YE + R  ++I 
Sbjct: 97  GQFIGSSTMK-----KIVEINDYLLGTLAGGAADCVYWDRVLAKQCRTYELRNRERISIA 151

Query: 172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
            A+ LL NM+  Y+          GLS G ++A +D+  GP LY +D+ G    G  F V
Sbjct: 152 AASKLLSNMIYNYKG--------MGLSIGMMLAGWDK-RGPSLYYVDSEGARTPGKVFSV 202

Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
           GSG+ YA   LD+ YR DLS+EEAY L   +IYHA  RD +SGG VR+Y I   GW  + 
Sbjct: 203 GSGSIYAFGTLDSGYRWDLSDEEAYELGKRSIYHATHRDAYSGGIVRVYHIKPTGWVHIS 262

Query: 292 SRDVKDI---YNDRKE 304
             D KD+   Y ++KE
Sbjct: 263 DEDCKDLHYMYQEQKE 278

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195489076|ref|XP_002092584.1| GE11586 [Drosophila yakuba] gi|194178685|gb|EDW92296.1| GE11586 [Drosophila yakuba]

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 9/181 (4%)

Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           +   T  +++ ++  +L TLAG AADCVYW   LAKEC+ ++ +YR  MT+  AA ++ N
Sbjct: 97  IGSQTMRKIVELNDYMLGTLAGGAADCVYWDRVLAKECRLHQLRYRKRMTVDTAARIICN 156

Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           +  +Y+          GL  G ++A +D+  GP+L  +D+ G+   G  F VGSG+ YA 
Sbjct: 157 ISTEYKG--------MGLVMGMMLAGFDD-EGPKLIYVDSDGMRSHGLVFSVGSGSPYAL 207

Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            +LDT YR DLS++EAY LA  AIYHA  +D +SGG VRLY IN +GW+ + + D  D++
Sbjct: 208 GVLDTGYRHDLSDQEAYDLARRAIYHATSKDAYSGGIVRLYHINSEGWRNICNTDCSDLH 267

Query: 300 N 300
           +
Sbjct: 268 D 268

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195347018|ref|XP_002040051.1| GM15565 [Drosophila sechellia] gi|194135400|gb|EDW56916.1| GM15565 [Drosophila sechellia]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 9/176 (5%)

Query: 124 TSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
           T  +++ ++  +L TLAG AADCVYW   LAKEC+ ++ +YR  MT+  AA ++ N+  +
Sbjct: 101 TMRKIVELNDYMLGTLAGGAADCVYWDRVLAKECRLHQLRYRKRMTVDTAARIICNISTE 160

Query: 184 YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243
           Y+          GL  G ++A +D+  GP+L  +D+ G++  G  F VGSG+ YA  +LD
Sbjct: 161 YKG--------MGLVMGMMLAGFDD-EGPKLIYVDSEGMISHGQVFSVGSGSPYALGVLD 211

Query: 244 TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
           T YR DLS++EAY LA  AIYHA  +D +SGG VRLY I+ +GW+ + + D  D++
Sbjct: 212 TGYRYDLSDQEAYDLARRAIYHATSKDAYSGGIVRLYHIHSEGWRNICNTDCSDLH 267

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195303|gb|EFN77251.1| Proteasome subunit beta type-5 [Harpegnathos saltator]

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 116/199 (58%), Gaps = 17/199 (8%)

Query: 112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
           G F  SST+      +++ ++  +L TLAG AADCVYW   LAK+C+ YE + R  ++I 
Sbjct: 98  GQFIGSSTMK-----KIVEINDYLLGTLAGGAADCVYWDRVLAKQCRMYELRNRERISIA 152

Query: 172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
            A+ LL NM+  Y+          GLS G ++A +D+  GP LY +D+ G    G  F V
Sbjct: 153 AASKLLSNMIYNYK--------GMGLSIGMMLAGWDK-RGPGLYYVDSEGTRTPGKVFSV 203

Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
           GSG+ +A  +LD+ Y+ DL++EEAY L   +IYHA  RD +SGG +R+Y +   GW  + 
Sbjct: 204 GSGSVFAFGVLDSGYKWDLTDEEAYELGRRSIYHATHRDAYSGGIIRVYHMKSTGWVHIS 263

Query: 292 SRDVKDI---YNDRKEAPP 307
             D KD+   Y+  KE  P
Sbjct: 264 DEDSKDLHYAYHAEKEIQP 282

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469684|gb|EFX80663.1| hypothetical protein DAPPUDRAFT_303852 [Daphnia pulex]

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 9/179 (5%)

Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           ++I ++  +L T+AG AADC YW   L+K+C+ YE + +  +++  A+ LLVNMV  Y+ 
Sbjct: 102 KIIEINDFLLGTMAGGAADCTYWERVLSKQCRLYELRNKERISVAAASKLLVNMVYNYK- 160

Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
                    GLS G ++A +D+  GP LY +DN G    G  F VGSG+ YA  +LD+ Y
Sbjct: 161 -------GMGLSMGVMIAGWDK-KGPGLYYVDNDGTRTPGQVFSVGSGSLYAYGVLDSGY 212

Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
           +PDL++EEAY L   AIYHA  RD  SGG +R+Y I   GW ++  +D  +++   +EA
Sbjct: 213 KPDLTDEEAYELGRRAIYHATYRDASSGGIIRVYHIKSTGWVKISEQDCTELHYQYEEA 271

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787761|ref|XP_394680.3| PREDICTED: proteasome subunit beta type-5-like [Apis mellifera]

 Score =  148 bits (373), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/196 (42%), Positives = 115/196 (58%), Gaps = 17/196 (8%)

Query: 112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
           G F  SST+      +++ ++  +L TLAG AADCVYW   LAK+C+ YE + R  ++I 
Sbjct: 97  GQFIGSSTMK-----KIVEINDYLLGTLAGGAADCVYWDRVLAKQCRTYELRNRERISIA 151

Query: 172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
            A+ LL NM+  Y+          GLS G ++A +D+  GP LY +D+ G    G  F V
Sbjct: 152 AASKLLSNMIYNYKG--------MGLSIGMMLAGWDK-RGPSLYYVDSEGARTPGKVFSV 202

Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
           GSG+ YA   LD+ YR DLS+EEAY L   +IYHA  RD +SGG VR+Y I   GW  + 
Sbjct: 203 GSGSIYAFGTLDSGYRWDLSDEEAYQLGKRSIYHATHRDAYSGGIVRVYHIKPTGWVHIS 262

Query: 292 SRDVKDI---YNDRKE 304
             D K++   Y ++KE
Sbjct: 263 DEDCKELHYMYQEQKE 278

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350409192|ref|XP_003488646.1| PREDICTED: proteasome subunit beta type-5-like [Bombus impatiens]

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 17/197 (8%)

Query: 112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
           G F  SST+      +++ ++  +L TLAG AADCVYW   LAK+C+ YE + R  ++I 
Sbjct: 97  GQFIGSSTMK-----KIVEINDYLLGTLAGGAADCVYWDRVLAKQCRTYELRNRERISIA 151

Query: 172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
            A+ LL NM+  Y+          GLS G ++A +D+  GP LY +D+ G    G  F V
Sbjct: 152 AASKLLSNMIYNYK--------GMGLSIGMMLAGWDK-RGPSLYYVDSEGARTPGKVFSV 202

Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
           GSG+ YA   LD+ YR DL++EEAY L   +IYHA  RD +SGG VR+Y +   GW  + 
Sbjct: 203 GSGSIYAFGALDSGYRWDLTDEEAYELGRRSIYHATHRDAYSGGIVRVYHMKPTGWVHIS 262

Query: 292 SRDVKDI---YNDRKEA 305
             D KD+   Y D+K+ 
Sbjct: 263 DEDCKDLHYMYQDQKQG 279

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
UNIPROTKB|P34065	256	PSMB5 "Proteasome subunit beta	0.557	0.679	0.404	1.4e-40
ZFIN|ZDB-GENE-050417-319	277	psmb8f "proteasome (prosome, m	0.528	0.595	0.425	2.2e-40
RGD|61879	263	Psmb5 "proteasome (prosome, ma	0.583	0.692	0.408	2.8e-40
UNIPROTKB|P28075	263	Psmb5 "Proteasome subunit beta	0.583	0.692	0.408	2.8e-40
UNIPROTKB|Q3T112	276	PSMB8 "Proteasome subunit beta	0.544	0.615	0.413	1.5e-39
FB|FBgn0051742	279	Prosbeta5R2 "Proteasome beta5	0.525	0.587	0.410	1.9e-39
UNIPROTKB|E2R3R2	263	PSMB5 "Proteasome subunit beta	0.573	0.680	0.393	6.5e-39
UNIPROTKB|Q32KL2	263	PSMB5 "Proteasome subunit beta	0.551	0.653	0.408	1.1e-38
UNIPROTKB|P28074	263	PSMB5 "Proteasome subunit beta	0.573	0.680	0.393	1.1e-38
UNIPROTKB|Q5R8S2	263	PSMB5 "Proteasome subunit beta	0.573	0.680	0.393	1.1e-38

UNIPROTKB|P34065 PSMB5 "Proteasome subunit beta type-5" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 74/183 (40%), Positives = 113/183 (61%)

Query:   118 STVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLL 177
             S +   T  +VI ++ S+L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL
Sbjct:    79 SYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLL 138

Query:   178 VNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEY 237
              NMV +Y+ G        GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ Y
Sbjct:   139 ANMVYQYK-GM-------GLSMGTMICGWDK-RGPGLYYVDSEGTRIPGEAFAVGSGSSY 189

Query:   238 AQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKD 297
             A  +LD   RPD++ +EA  LA  AI+ A RRD +SGG V +Y +  +GW++V S DV  
Sbjct:   190 AYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGPRGWRRVSSHDVAG 249

Query:   298 IYN 300
             +++
Sbjct:   250 LHD 252

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-050417-319 psmb8f "proteasome (prosome, macropain) subunit, beta type, 8f" [Danio rerio (taxid:7955)]

 Score = 360 (131.8 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
 Identities = 74/174 (42%), Positives = 110/174 (63%)

Query:   127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
             +VI ++  +L T++GNAADCVYW   LAKEC+ Y+ + +T +++  A+ LL NMV +YR 
Sbjct:   105 KVIEINPYLLGTMSGNAADCVYWERRLAKECRIYKLRNKTRISVAAASKLLANMVAEYR- 163

Query:   187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
             G        GLS GT++  +D+  GP LY + ++G  + G  F  GSG  YA  ++D+ +
Sbjct:   164 GM-------GLSMGTMVCGWDQ-RGPGLYYVSSSGTRLAGDMFSTGSGCNYAYGVMDSGH 215

Query:   247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYN 300
             R DL+  EAY LA  AIYHA  RD +SGG V +Y +  +GW +V   DV D+++
Sbjct:   216 RWDLTVPEAYDLAERAIYHATHRDAYSGGVVNMYHMQKEGWIKVSQNDVGDLHH 269

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|61879 Psmb5 "proteasome (prosome, macropain) subunit, beta type 5" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
 Identities = 80/196 (40%), Positives = 115/196 (58%)

Query:   112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
             GP+  S TV      +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++ 
Sbjct:    82 GPYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVA 136

Query:   172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
              A+ LL NMV +Y+ G        GLS GT++  +D+  GP LY +D+ G  I GT F V
Sbjct:   137 AASKLLANMVYQYK-GM-------GLSMGTMICGWDK-RGPGLYYVDSEGNRISGTAFSV 187

Query:   232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
             GSG+ YA  ++D  Y  DL  EEAY LA  AIY A  RD +SGG V LY +   GW +V 
Sbjct:   188 GSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVS 247

Query:   292 SRDVKDIYNDRKEAPP 307
             S +V D+++    + P
Sbjct:   248 SDNVADLHDKYTSSIP 263

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA;ISO;ISS

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0008233 "peptidase activity" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P28075 Psmb5 "Proteasome subunit beta type-5" [Rattus norvegicus (taxid:10116)]

 Score = 348 (127.6 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
 Identities = 80/196 (40%), Positives = 115/196 (58%)

Query:   112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
             GP+  S TV      +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++ 
Sbjct:    82 GPYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVA 136

Query:   172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
              A+ LL NMV +Y+ G        GLS GT++  +D+  GP LY +D+ G  I GT F V
Sbjct:   137 AASKLLANMVYQYK-GM-------GLSMGTMICGWDK-RGPGLYYVDSEGNRISGTAFSV 187

Query:   232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
             GSG+ YA  ++D  Y  DL  EEAY LA  AIY A  RD +SGG V LY +   GW +V 
Sbjct:   188 GSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVS 247

Query:   292 SRDVKDIYNDRKEAPP 307
             S +V D+++    + P
Sbjct:   248 SDNVADLHDKYTSSIP 263

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q3T112 PSMB8 "Proteasome subunit beta type-8" [Bos taurus (taxid:9913)]

 Score = 341 (125.1 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 74/179 (41%), Positives = 107/179 (59%)

Query:   127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
             +VI ++  +L T++G AADC+YW   LAKEC+ Y  +    +++  A+ LL NM+ +YR 
Sbjct:   105 KVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYR- 163

Query:   187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
             G        GLS G+++  +D+  GP LY +D  G  + G  F  GSG  +A  ++D+ Y
Sbjct:   164 GM-------GLSMGSMICGWDK-KGPGLYYVDENGTRLSGNMFSTGSGNSHAYGVMDSGY 215

Query:   247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA 305
             RPDLS EEAY L   AI HA  RD +SGG V +Y +   GW +V S DV D+ +  +EA
Sbjct:   216 RPDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVESTDVSDLMHQYREA 274

GO:0005839 "proteasome core complex" evidence=ISS

GO:0045444 "fat cell differentiation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019882 "antigen processing and presentation" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

FB|FBgn0051742 Prosbeta5R2 "Proteasome beta5 subunit-related 2" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 71/173 (41%), Positives = 105/173 (60%)

Query:   127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
             +V+ V+  I+ T AG AADC YW  +L +EC+ +E +Y+  + ++ AA  + N+  +Y+ 
Sbjct:   104 KVVQVNQYIMGTTAGGAADCTYWDRALTRECRLHELRYKERLPVQSAAKYISNVAAEYK- 162

Query:   187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
             G        GL  G ++A +    GP L  +D+ GL I G  F VGSGA  A  ILD+DY
Sbjct:   163 GM-------GLCMGMMLAGWSPE-GPSLVYVDSNGLRIHGKLFAVGSGAPNALGILDSDY 214

Query:   247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
             R DLS+ EAY LA  A+YHA   DI SGG VRLY ++   W+ V ++D ++++
Sbjct:   215 RLDLSDNEAYDLAFLAVYHATMTDIFSGGVVRLYHMDQGNWRNVANKDCQELH 267

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|E2R3R2 PSMB5 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
 Identities = 74/188 (39%), Positives = 110/188 (58%)

Query:   120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
             +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL N
Sbjct:    85 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144

Query:   180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
             MV +Y+ G        GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ YA 
Sbjct:   145 MVYQYK-GM-------GLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195

Query:   240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
              ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V S +V D++
Sbjct:   196 GVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 255

Query:   300 NDRKEAPP 307
             +    + P
Sbjct:   256 DKYSGSTP 263

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q32KL2 PSMB5 "Proteasome subunit beta type-5" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 74/181 (40%), Positives = 108/181 (59%)

Query:   120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
             +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL N
Sbjct:    85 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144

Query:   180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
             MV +Y+ G        GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ YA 
Sbjct:   145 MVYQYK-GM-------GLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195

Query:   240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
              ++D  Y  DL  EEAY LA  AIY A  RD +SGG V LY +   GW +V S +V D++
Sbjct:   196 GVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDGWIRVSSDNVADLH 255

Query:   300 N 300
             +
Sbjct:   256 D 256

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

UNIPROTKB|P28074 PSMB5 "Proteasome subunit beta type-5" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 74/188 (39%), Positives = 109/188 (57%)

Query:   120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
             +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL N
Sbjct:    85 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144

Query:   180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
             MV +Y+ G        GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ YA 
Sbjct:   145 MVYQYK-GM-------GLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195

Query:   240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
              ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V S +V D++
Sbjct:   196 GVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 255

Query:   300 NDRKEAPP 307
                  + P
Sbjct:   256 EKYSGSTP 263

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5R8S2 PSMB5 "Proteasome subunit beta type-5" [Pongo abelii (taxid:9601)]

 Score = 335 (123.0 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 74/188 (39%), Positives = 109/188 (57%)

Query:   120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
             +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+ LL N
Sbjct:    85 IASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLAN 144

Query:   180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
             MV +Y+ G        GLS GT++  +D+  GP LY +D+ G  I G  F VGSG+ YA 
Sbjct:   145 MVYQYK-GM-------GLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAY 195

Query:   240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
              ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V S +V D++
Sbjct:   196 GVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLH 255

Query:   300 NDRKEAPP 307
                  + P
Sbjct:   256 EKYSGSTP 263

GO:0005839 "proteasome core complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54BC8	PSB5_DICDI	3, ., 4, ., 2, 5, ., 1	0.3417	0.6794	0.7794	yes	N/A
O55234	PSB5_MOUSE	3, ., 4, ., 2, 5, ., 1	0.3864	0.6089	0.7196	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.824
3rd Layer	3.4.25	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	312
cd03761	188	cd03761, proteasome_beta_type_5, proteasome beta t	5e-53
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	2e-43
PTZ00488	247	PTZ00488, PTZ00488, Proteasome subunit beta type-5	2e-42
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	8e-39
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	4e-33
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	2e-28
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	3e-23
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	6e-23
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	4e-22
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	3e-20
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	3e-12
cd01911	209	cd01911, proteasome_alpha, proteasome alpha subuni	1e-11
cd03753	213	cd03753, proteasome_alpha_type_5, proteasome_alpha	5e-10
TIGR03690	219	TIGR03690, 20S_bact_beta, proteasome, beta subunit	2e-08
cd03761	188	cd03761, proteasome_beta_type_5, proteasome beta t	5e-08
cd03756	211	cd03756, proteasome_alpha_archeal, proteasome_alph	2e-07
cd03757	212	cd03757, proteasome_beta_type_1, proteasome beta t	6e-07
cd03752	213	cd03752, proteasome_alpha_type_4, proteasome_alpha	7e-07
cd03751	212	cd03751, proteasome_alpha_type_3, proteasome_alpha	1e-06
PRK03996	241	PRK03996, PRK03996, proteasome subunit alpha; Prov	2e-06
cd03763	189	cd03763, proteasome_beta_type_7, proteasome beta t	2e-06
TIGR03633	224	TIGR03633, arc_protsome_A, proteasome endopeptidas	4e-06
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	2e-05
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	2e-05
PTZ00488	247	PTZ00488, PTZ00488, Proteasome subunit beta type-5	3e-05
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	3e-05
PTZ00246	253	PTZ00246, PTZ00246, proteasome subunit alpha; Prov	3e-05
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	1e-04
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	3e-04
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	4e-04
cd03755	207	cd03755, proteasome_alpha_type_7, proteasome_alpha	4e-04
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	0.002

>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit

 Score =  171 bits (436), Expect = 5e-53
 Identities = 75/180 (41%), Positives = 108/180 (60%), Gaps = 14/180 (7%)

Query: 111 CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI 170
            G +  S TV      +VI ++  +L T+AG AADC YW   L +EC+ YE + +  +++
Sbjct: 22  AGSYIASQTVK-----KVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISV 76

Query: 171 RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
             A+ LL NM+ +Y+          GLS GT++  +D+  GP LY +D+ G  ++G  F 
Sbjct: 77  AAASKLLSNMLYQYKG--------MGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFS 127

Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
           VGSG+ YA  +LD+ YR DLS EEAY LA  AIYHA  RD +SGG V LY +   GW+++
Sbjct: 128 VGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKI 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  147 bits (373), Expect = 2e-43
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +S +IL   AG+AAD       L +  + YE +    ++++ AANLL N++  YR  
Sbjct: 34  IFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYR-- 91

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
                         ++   D+  GP LY +D  G LIE      GSG++YA  ILD  Y+
Sbjct: 92  ------GFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK 145

Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
           PD++ EEA  L   AI  A  RD+ SGG V +  I   G +++
Sbjct: 146 PDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL 188

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional

 Score =  146 bits (369), Expect = 2e-42
 Identities = 68/188 (36%), Positives = 109/188 (57%), Gaps = 14/188 (7%)

Query: 112 GPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIR 171
           GP+  S +V      +VI ++ ++L T+AG AADC +W   LA +C+ YE +    +++ 
Sbjct: 62  GPYIASQSVK-----KVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVA 116

Query: 172 HAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV 231
            A+ +L N+V  Y+          GLS GT++  +D+  GP L+ +DN G  + G  F  
Sbjct: 117 AASKILANIVWNYKG--------MGLSMGTMICGWDKK-GPGLFYVDNDGTRLHGNMFSC 167

Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
           GSG+ YA  +LD  ++ DL++EEA  L   AIYHA  RD +SGG + LY +   GW+++ 
Sbjct: 168 GSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKIS 227

Query: 292 SRDVKDIY 299
           + D  D++
Sbjct: 228 ADDCFDLH 235

Length = 247

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score =  134 bits (341), Expect = 8e-39
 Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +   I C  AG AAD    +  L KE + Y  +Y   + +   A LL N++ +Y   
Sbjct: 34  IFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS 93

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
                    L    L+A  DE  GPQLY +D +G  IE     +GSG++YA  IL+  Y+
Sbjct: 94  L------RPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK 147

Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
           PD++ EEA  LA  A+  A  RD++SGG + +  I
Sbjct: 148 PDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score =  120 bits (303), Expect = 4e-33
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 14/173 (8%)

Query: 115 SQSSTVPHNTSFQ-VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI--- 170
           ++ S +    + + +  +   I    AG AAD    +     E + Y  +Y   +++   
Sbjct: 25  TRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLVDYARAEAQLYRLRYGRPISVELA 84

Query: 171 -RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF 229
            R A  L        R                L+A YDE  GP LY +D +G +IE    
Sbjct: 85  KRIADKLQAYTQYSGR---------RPYGVSLLIAGYDEDGGPHLYSIDPSGSVIEYKAT 135

Query: 230 CVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
            +GSG++YA   L+  Y+PD++ EEA  LA  A+  A  RD  SGG + +  I
Sbjct: 136 AIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDALSGGNIEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score =  109 bits (274), Expect = 2e-28
 Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 8/175 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +   I   +AG AAD    +     E + Y  +Y   +++   A LL N++++Y   
Sbjct: 64  IFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS 123

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
                         L+A  D+  GP+LY  D +G   E     +GSG+++A   L+ +YR
Sbjct: 124 ------GRPYGVSLLVAGVDDG-GPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYR 176

Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI-NGQGWQQVLSRDVKDIYND 301
            DLS EEA  LA  A+  A  RD  SGG + +  I   +G++++   ++K + +D
Sbjct: 177 EDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDD 231

Length = 236

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score = 93.2 bits (232), Expect = 3e-23
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 9/153 (5%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
            S    V  +   ++      I   LAG AAD    +  L +  + Y  +Y   +++   
Sbjct: 20  LSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVAL 79

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV-G 232
           A  L  +++ Y  G              ++A  DE  G  LY +D +G +IE       G
Sbjct: 80  AKELAKLLQVYTQGRP-------FGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATG 131

Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYH 265
           S ++ A+++L+  Y+PD++ EEA  LA  A+  
Sbjct: 132 SRSQRAKSLLEKLYKPDMTLEEAVELALKALKS 164

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 93.5 bits (233), Expect = 6e-23
 Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +   I  T+AG+  D    +  L  E + YE +    M+I+  A LL N++   +  
Sbjct: 34  IFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSSKYF 93

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
            +  ++        L+   DE  GP LY LD  G +IE      GSG+ YA  +L+ +Y+
Sbjct: 94  PYIVQL--------LIGGVDEE-GPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK 144

Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
            D++ EEA  LA  AI  A  RD  SG  + +  I   G++++
Sbjct: 145 EDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 91.1 bits (227), Expect = 4e-22
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           V  +   I  T+AG+  D    +  L  E K YE +    M+++  A LL N++   R  
Sbjct: 35  VFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFF 94

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
               ++        L+   DE  GP LY LD  G +IE      GSG+  A  +L+ +YR
Sbjct: 95  PFIVQL--------LVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR 145

Query: 248 PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286
            D+S EEA  LA  AI  A  RD+ SG  + +  I   G
Sbjct: 146 EDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDG 184

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 25/167 (14%)

Query: 128 VIPVSSSILCTLAGNAAD-------CVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNM 180
           +  +   I C  +G+AAD         Y+L         +  +      ++ AA+L  N+
Sbjct: 34  LTQLHDRIYCCRSGSAADTQAIADYVRYYLDM-------HSIELGEPPLVKTAASLFKNL 86

Query: 181 VRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQ 239
              Y+           LS G ++A +DE  G Q+Y +   G+LI    F + GSG+ Y  
Sbjct: 87  CYNYK---------EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQ-PFAIGGSGSTYIY 136

Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG 286
             +D +Y+P ++ EE      +A+  A  RD  SGG +RL  I   G
Sbjct: 137 GYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDG 183

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +S   L   +G A D + +   + K  + Y  K R G  +   A    N  R+    
Sbjct: 35  IYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLY--KMRNGYELSPKA--AANFTRRELAE 90

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
           +  S+ P  ++   L+A YD++ GP LY +D  G L++      G GA +  +ILD  Y+
Sbjct: 91  SLRSRTPYQVNL--LLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK 148

Query: 248 PDLSEEEAYAL 258
           PD++ EEA  L
Sbjct: 149 PDMTVEEALEL 159

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit

 Score = 62.8 bits (154), Expect = 1e-11
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAK----ECKGYECKYRTGMTIRHAANLLVNMVRK 183
           +  +   I C +AG  AD       L      E + Y   Y   + +      + ++ + 
Sbjct: 60  IFKIDDHIGCAVAGLTADA----RVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQV 115

Query: 184 YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243
           Y    +    P G+S   L+A YDE  GPQLY  D +G         +G G++ A+  L+
Sbjct: 116 Y--TQYGGVRPFGVSL--LIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLE 171

Query: 244 TDYRPDLSEEEAYALATSAIYHA 266
             Y+ DL+ EEA  LA  A+   
Sbjct: 172 KRYKKDLTLEEAIKLALKALKEV 194

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. Length = 209

>gnl|CDD|239722 cd03753, proteasome_alpha_type_5, proteasome_alpha_type_5

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 117 SSTVPHNTSFQVI-PVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
           +S +   +S + I  +   I C ++G  AD    +     E + +   Y   MT+     
Sbjct: 48  TSPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQ 107

Query: 176 LLVNMVRKYRTGNHSSKI---PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
            + ++  ++  G+   K    P G++   L+A  DE  GPQL+  D +G         +G
Sbjct: 108 AVSDLALQFGEGDDGKKAMSRPFGVAL--LIAGVDE-NGPQLFHTDPSGTFTRCDAKAIG 164

Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALA 259
           SG+E AQ+ L   Y  D++ EEA  LA
Sbjct: 165 SGSEGAQSSLQEKYHKDMTLEEAEKLA 191

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|163402 TIGR03690, 20S_bact_beta, proteasome, beta subunit, bacterial type

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 7/139 (5%)

Query: 139 LAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLS 198
           +AG A   +  +     E + YE      +T+   AN L  MVR    GN  + +  GL+
Sbjct: 47  IAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVR----GNLPAAM-QGLA 101

Query: 199 FGTLMAAYDEILGP-QLYMLDNTGLLIEGTKF-CVGSGAEYAQAILDTDYRPDLSEEEAY 256
              L+A YD   G  +++  D TG   E   +  VGSG+ +A+  L   Y PDL E++A 
Sbjct: 102 VVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDAL 161

Query: 257 ALATSAIYHACRRDIHSGG 275
            +A  A+Y A   D  +GG
Sbjct: 162 RVAVEALYDAADDDSATGG 180

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 219

>gnl|CDD|239730 cd03761, proteasome_beta_type_5, proteasome beta type-5 subunit

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TTTL F +  G+I+A DSRATA   I SQ + K
Sbjct: 1  TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKK 33

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239725 cd03756, proteasome_alpha_archeal, proteasome_alpha_archeal

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 199 FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAY 256
           FG   L+A  D+  GP+L+  D +G   E     +GSG +     L+ +Y+ D+S EEA 
Sbjct: 126 FGVALLIAGVDDG-GPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAI 184

Query: 257 ALATSAIYHA 266
            LA  A+Y A
Sbjct: 185 ELALKALYAA 194

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 211

>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 29/181 (16%)

Query: 122 HNTSFQ--VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
             +     +  ++   +   +G  AD +     L    K Y+  +   M+    A LL  
Sbjct: 34  ILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLST 93

Query: 180 MV--RK---YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           ++  R+   Y   N             ++A  DE     +Y  D  G     T    GS 
Sbjct: 94  ILYSRRFFPYYVFN-------------ILAGIDEEGKGVVYSYDPVGSYERETYSAGGSA 140

Query: 235 AEYAQAILD---------TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ 285
           +   Q +LD            R  LS EEA +L   A   A  RDI++G  + +  I   
Sbjct: 141 SSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKD 200

Query: 286 G 286
           G
Sbjct: 201 G 201

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|239721 cd03752, proteasome_alpha_type_4, proteasome_alpha_type_4

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 8/131 (6%)

Query: 131 VSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV--RKYRTGN 188
           +   I C +AG  +D    ++      + Y   Y+  +        LV  +   K     
Sbjct: 66  IDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPI----PVEQLVQRLCDIKQGYTQ 121

Query: 189 HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRP 248
           +    P G+SF  L A +D+  G QLY  D +G         +G+  + AQ++L  DY+ 
Sbjct: 122 YGGLRPFGVSF--LYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKD 179

Query: 249 DLSEEEAYALA 259
           D++ EEA ALA
Sbjct: 180 DMTLEEALALA 190

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 213

>gnl|CDD|239720 cd03751, proteasome_alpha_type_3, proteasome_alpha_type_3

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 131 VSSSILCTLAGNAADCVYWLHSLAK-ECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNH 189
           V   I   +AG  AD  + L S A+ E + Y   Y T + ++  A+ +   +  Y    +
Sbjct: 66  VDRHIGIAVAGLLADGRH-LVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTL--Y 122

Query: 190 SSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPD 249
           SS  P G S   L+  YD   GPQLYM++ +G+        +G G + A+  L+     +
Sbjct: 123 SSVRPFGCSV--LLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSE 179

Query: 250 LSEEEAYALATSAIYHACRRDI 271
           L+  EA     + I +    +I
Sbjct: 180 LTCREA-VKEAAKIIYIVHDEI 200

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|235192 PRK03996, PRK03996, proteasome subunit alpha; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 199 FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAY 256
           FG   L+A  D+  GP+L+  D +G  +E     +G+G +     L+ +Y+ DLS EEA 
Sbjct: 134 FGVALLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAI 192

Query: 257 ALATSAIYHA 266
            LA  A+  A
Sbjct: 193 ELALKALAKA 202

Length = 241

>gnl|CDD|239732 cd03763, proteasome_beta_type_7, proteasome beta type-7 subunit

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query: 211 GPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRD 270
           GP LY +   G   +     +GSG+  A ++L+  Y+PD++EEEA  L   AI      D
Sbjct: 107 GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFND 166

Query: 271 IHSGGCVRLYKI 282
           + SG  V L  I
Sbjct: 167 LGSGSNVDLCVI 178

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|163366 TIGR03633, arc_protsome_A, proteasome endopeptidase complex, archaeal, alpha subunit

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 199 FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAY 256
           FG   L+A  D+  GP+L+  D +G L+E     +G+G +     L+ +YR DLS +EA 
Sbjct: 127 FGVALLIAGVDDG-GPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAI 185

Query: 257 ALATSAIYHA 266
            LA  A+Y A
Sbjct: 186 ELALKALYSA 195

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 224

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           GTTT+G +  +G++LA D RAT+  LI S  + K  +
Sbjct: 29 GGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFK 66

Length = 236

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 15/167 (8%)

Query: 115 SQSSTVPHNTSFQ-VIPVSSSILCTLAGNAADCVYWLHSLAK-ECKGYECKYRTGMTIRH 172
            Q  TV  +T FQ V  +   +   LAG A D V  L    +     Y  +    +  + 
Sbjct: 25  VQQQTV--STDFQKVFRIGDRLYIGLAGLATD-VQTLAQKLRFRVNLYRLREEREIKPKT 81

Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CV 231
            ++L+ +++ + R G +  +         ++A  D    P +  +D  G     + F   
Sbjct: 82  FSSLISSLLYEKRFGPYFVEP--------VVAGLDPDGKPFICTMDLIGCPSIPSDFVVS 133

Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSG-GCV 277
           G+ +E    + ++ +RPD+  +E +   + A+  A  RD  SG G V
Sbjct: 134 GTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWGAV 180

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

>gnl|CDD|185666 PTZ00488, PTZ00488, Proteasome subunit beta type-5; Provisional

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 2  FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          F  GTTTL F+Y  GII+A DS+ATA   I SQ + K
Sbjct: 36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKK 72

Length = 247

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQK 35
          TGTT +G +  +G++LA D RAT    ++S+ 
Sbjct: 3  TGTTIVGIKGKDGVVLAADKRATRGSKLLSKD 34

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|173491 PTZ00246, PTZ00246, proteasome subunit alpha; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 8/149 (5%)

Query: 113 PFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRH 172
           P S     P   + ++  + S I C +AG  AD     + L  +C+ Y  +YR       
Sbjct: 50  PISSKLLDPGKINEKIYKIDSHIFCAVAGLTADA----NILINQCRLYAQRYRYTYGEPQ 105

Query: 173 AANLLVNMV--RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
               LV  +   K          P G+SF  L A YDE LG QLY  D +G         
Sbjct: 106 PVEQLVVQICDLKQSYTQFGGLRPFGVSF--LFAGYDENLGYQLYHTDPSGNYSGWKATA 163

Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALA 259
           +G   + AQ+IL  +++ DL+ E+   LA
Sbjct: 164 IGQNNQTAQSILKQEWKEDLTLEQGLLLA 192

Length = 253

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +G +  +G++LA D+RA+A  L+ S+  +K
Sbjct: 1  TTIVGIKGKDGVVLAADTRASAGSLVASRNFDK 33

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +G +  +G++LA D R T+  L+ S  + K
Sbjct: 1  TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEK 33

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 5  GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          GTTT+G +  +G++LA D RA+  + + S+   K
Sbjct: 1  GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKK 34

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239724 cd03755, proteasome_alpha_type_7, proteasome_alpha_type_7

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 27/141 (19%), Positives = 61/141 (43%), Gaps = 6/141 (4%)

Query: 124 TSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
           T  ++  +   +    AG  AD    ++    EC+ +       +T+ +    +  + ++
Sbjct: 56  TVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQR 115

Query: 184 YRTGNHSSKI-PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
           Y     S  + P G+S  TL+  +D    P+LY  D +G         +G  ++  +  L
Sbjct: 116 Y---TQSGGVRPFGIS--TLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFL 170

Query: 243 DTDYRPDLSEEEAYALATSAI 263
           + +Y+ +++ ++   LA  A+
Sbjct: 171 EKNYKEEMTRDDTIKLAIKAL 191

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 207

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TTT+G    +G++LA D RA+  + I S+ + K
Sbjct: 1  TTTVGIVCKDGVVLAADKRASMGNFIASKNVKK 33

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
KOG0175|consensus	285		100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
KOG0176|consensus	241		100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
KOG0174|consensus	224		100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
KOG0178|consensus	249		100.0
KOG0181|consensus	233		100.0
KOG0185|consensus	256		100.0
KOG0183|consensus	249		100.0
KOG0173|consensus	271		100.0
KOG0863|consensus	264		100.0
KOG0179|consensus	235		100.0
KOG0177|consensus	200		100.0
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	100.0
KOG0184|consensus	254		100.0
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	100.0
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	100.0
KOG0182|consensus	246		99.98
KOG0180|consensus	204		99.97
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.95
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	99.56
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.34
PTZ00246	253	proteasome subunit alpha; Provisional	90.22
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	90.21
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	88.45
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	86.79
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	85.67
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	85.56
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	84.63
PRK03996	241	proteasome subunit alpha; Provisional	84.3
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	83.73
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	82.81

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-45  Score=337.15  Aligned_cols=207  Identities=33%  Similarity=0.525  Sum_probs=199.2

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|+|+|.++.++.++|                                            
T Consensus        28 ~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~K--------------------------------------------   63 (236)
T COG0638          28 RGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEK--------------------------------------------   63 (236)
T ss_pred             cCCceEEEEEecCEEEEEEeccCCCCceecccccce--------------------------------------------
Confidence            457999999999999999999999999999999999                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|+|||+|++||+.+|++.++++++.+++.|++
T Consensus        64 ---------------------------------------------i~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~   98 (236)
T COG0638          64 ---------------------------------------------IFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRL   98 (236)
T ss_pred             ---------------------------------------------EEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      .++++++++.+++++++++|.+++  +  +|||+  +++||||+|+ ++|+||++||+|++.+++++|+|+|+.+++++|
T Consensus        99 ~~~~~i~v~~la~~ls~~l~~~~~--~--~rP~g--v~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~L  171 (236)
T COG0638          99 RYGEPISVEALAKLLSNILQEYTQ--S--GRPYG--VSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFL  171 (236)
T ss_pred             HhCCCCCHHHHHHHHHHHHHHhcc--C--cccce--EEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHH
Confidence            999999999999999999999998  5  89998  5789999999 899999999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC-CCeEEeChhHHHHHHHHHhcC
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING-QGWQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk-~G~~~l~~~eI~~~l~~~~~~  305 (312)
                      |++|+++|++|||++++++||+.+++||..++++++|++|++ +|++.++.++++.++++++++
T Consensus       172 e~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~~  235 (236)
T COG0638         172 EKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSEK  235 (236)
T ss_pred             HhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998999999999999 799999999999999988764

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=1.1e-45  Score=339.58  Aligned_cols=207  Identities=41%  Similarity=0.739  Sum_probs=197.8

Q ss_pred             CcccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210          1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF   80 (312)
Q Consensus         1 ~~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      ++.+|||+|||+++||||||+|+|.++|.++.++..+|                                          
T Consensus        35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~K------------------------------------------   72 (247)
T PTZ00488         35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKK------------------------------------------   72 (247)
T ss_pred             ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCc------------------------------------------
Confidence            46789999999999999999999999999999998888                                          


Q ss_pred             CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210         81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~  160 (312)
                                                                     ||+|++|++|+++|+.+|++.++++++.+++.|
T Consensus        73 -----------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y  105 (247)
T PTZ00488         73 -----------------------------------------------VIEINPTLLGTMAGGAADCSFWERELAMQCRLY  105 (247)
T ss_pred             -----------------------------------------------eEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHH
Confidence                                                           999999999999999999999999999999999


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      +++++++++++.+|++|++++|.+|.        |++++++|+||||+ .+|+||++||+|++.++++.|+|+|+.++++
T Consensus       106 ~~~~g~~isv~~la~~ls~~l~~~R~--------~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~  176 (247)
T PTZ00488        106 ELRNGELISVAAASKILANIVWNYKG--------MGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYG  176 (247)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHhcCC--------CCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHH
Confidence            99999999999999999999998654        67777789999997 7899999999999999999999999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcC
Q psy14210        241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~  305 (312)
                      +||+.|+++||.|||++++++||+.+.+||..++++++|++|+++|++.++++||+++++.++++
T Consensus       177 ~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~l~~~ei~~~l~~~~~~  241 (247)
T PTZ00488        177 VLDAGFKWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKKISADDCFDLHQKYAAE  241 (247)
T ss_pred             HHHhcCcCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCccEECCHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999988654

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=3.9e-44  Score=323.95  Aligned_cols=207  Identities=29%  Similarity=0.407  Sum_probs=192.9

Q ss_pred             cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210          4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP   83 (312)
Q Consensus         4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (312)
                      +|||+|||+++||||||+|+|.++|.++.+++.+|                                             
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~K---------------------------------------------   35 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEK---------------------------------------------   35 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcce---------------------------------------------
Confidence            49999999999999999999999999999999889                                             


Q ss_pred             CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210         84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK  163 (312)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~  163 (312)
                                                                  ||+|++|++|+++|+.+|++.+.++++.+++.|+++
T Consensus        36 --------------------------------------------I~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~   71 (219)
T TIGR03690        36 --------------------------------------------VYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKI   71 (219)
T ss_pred             --------------------------------------------EEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHH
Confidence                                                        999999999999999999999999999999999999


Q ss_pred             cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecC-CCCeEEEEcCCc-eEEecCeeeEccChHHHHHH
Q psy14210        164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEI-LGPQLYMLDNTG-LLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~-~gp~Ly~iDpsG-s~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++.+|++|++++|.++.   +.+|||+  +++||||||+. ++|+||++||+| ++..++++|+|+|+.+++++
T Consensus        72 ~~~~i~~~~la~~ls~~~~~~~~---~~~rp~~--v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~  146 (219)
T TIGR03690        72 EGVPLTLDGKANRLAAMVRGNLP---AAMQGLA--VVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGA  146 (219)
T ss_pred             HCCCCCHHHHHHHHHHHHHhhhh---hccCCce--EEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHH
Confidence            99999999999999999998764   3489988  56799999964 579999999999 57777899999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc-------EEEEEEECCCeEEeChhHHHHHHHHHhc
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC-------VRLYKINGQGWQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~-------ieI~iItk~G~~~l~~~eI~~~l~~~~~  304 (312)
                      ||++|+++||+|||++++++||..+.+||..+++.       ++|++|+++|+++++++||+++++++.+
T Consensus       147 Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~l~~~ei~~~~~~~~~  216 (219)
T TIGR03690       147 LKKLYSPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARRVPESELEELARAIVE  216 (219)
T ss_pred             HHhcCCCCcCHHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEEcCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999877764       3999999999999999999999988765

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=3.2e-44  Score=318.47  Aligned_cols=190  Identities=25%  Similarity=0.378  Sum_probs=181.6

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+||++++||||||+|+|.++|.++.++.++|                                               
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~K-----------------------------------------------   34 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDK-----------------------------------------------   34 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCccc-----------------------------------------------
Confidence            899999999999999999999999999999888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|+++|+.+|++.++++++.+++.|+++++
T Consensus        35 ------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~   72 (193)
T cd03758          35 ------------------------------------------IYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNG   72 (193)
T ss_pred             ------------------------------------------EEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.+++  .  .|||+  +++|+||||++.+|+||++||+|++.+++++|+|+|+.+++++||+.
T Consensus        73 ~~i~~~~la~~l~~~~~~~~~--~--~rP~~--~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~  146 (193)
T cd03758          73 YELSPKAAANFTRRELAESLR--S--RTPYQ--VNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRY  146 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHhh--c--CCCeE--EEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhc
Confidence            999999999999999998876  2  27988  57899999975789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      |+++||+|||++++++||+.+.+||+.++++++|++|+++|++++
T Consensus       147 ~~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~  191 (193)
T cd03758         147 YKPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGIRDL  191 (193)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCeEeC
Confidence            999999999999999999999999999999999999999999864

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=4.4e-44  Score=325.07  Aligned_cols=201  Identities=20%  Similarity=0.361  Sum_probs=191.7

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|+|+||++++||||||+|+|.+ +.++.++..+|                                            
T Consensus        25 ~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~K--------------------------------------------   59 (227)
T cd03750          25 SSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHK--------------------------------------------   59 (227)
T ss_pred             HcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcce--------------------------------------------
Confidence            589999999999999999999998 58888888888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   |++|++|++|+++|..+|++.++++++.+++.|++
T Consensus        60 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~   94 (227)
T cd03750          60 ---------------------------------------------VEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYL   94 (227)
T ss_pred             ---------------------------------------------EEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      .++++++++.++++|++++|.+++  +++.|||++  ++||+|||+ .+|+||++||+|++.+++++|+|+|+.+++++|
T Consensus        95 ~~~~~~~v~~la~~l~~~~~~~t~--~~~~rP~~v--~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~L  169 (227)
T cd03750          95 VYGEPIPVSQLVREIASVMQEYTQ--SGGVRPFGV--SLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFL  169 (227)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHhcC--CCCCCChhe--EEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHH
Confidence            999999999999999999999999  888999984  689999997 689999999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHH
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIY  299 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l  299 (312)
                      |++|+++||+|||++++++||+.+++||. ++++++|++++++ |+++++++||++++
T Consensus       170 e~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~~~~~~~~ei~~~~  226 (227)
T cd03750         170 EKRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKGFRLLTPAEIKDYL  226 (227)
T ss_pred             HhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence            99999999999999999999999999875 8899999999995 89999999999987

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=5.5e-44  Score=315.63  Aligned_cols=188  Identities=46%  Similarity=0.808  Sum_probs=180.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|.++|.++.++..+|                                               
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~K-----------------------------------------------   33 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKK-----------------------------------------------   33 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcce-----------------------------------------------
Confidence            799999999999999999999999999988888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|+++|+.+|++.+++++|.+++.|+++++
T Consensus        34 ------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~   71 (188)
T cd03761          34 ------------------------------------------VIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNK   71 (188)
T ss_pred             ------------------------------------------EEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+|+++++++|.+|+      .||+  +++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus        72 ~~i~~~~la~~ls~~l~~~~~------~~~~--v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~  142 (188)
T cd03761          72 ERISVAAASKLLSNMLYQYKG------MGLS--MGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSG  142 (188)
T ss_pred             CCCCHHHHHHHHHHHHHhcCC------CCeE--EEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhc
Confidence            999999999999999999998      5766  5789999997 799999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeC
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL  291 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~  291 (312)
                      |+++||+|||++++++||+.+.+||..++++++|++|+++|+++++
T Consensus       143 ~~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~~  188 (188)
T cd03761         143 YRYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRKIS  188 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEEcC
Confidence            9999999999999999999999999999999999999999998753

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=9.1e-44  Score=328.00  Aligned_cols=212  Identities=20%  Similarity=0.317  Sum_probs=200.1

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|+|+|||+++||||||+|+|.+++.++.++..+|                                           
T Consensus        28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~K-------------------------------------------   64 (253)
T PTZ00246         28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEK-------------------------------------------   64 (253)
T ss_pred             HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCccc-------------------------------------------
Confidence            3579999999999999999999999987777777788                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|+++++|+++|+.+|++.+.+.+|.+++.|+
T Consensus        65 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~   98 (253)
T PTZ00246         65 ----------------------------------------------IYKIDSHIFCAVAGLTADANILINQCRLYAQRYR   98 (253)
T ss_pred             ----------------------------------------------EEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      +.++++++++.+++.++.+++.+++  +++.|||+  +++||||||++.+|+||.+||+|++.+++++|+|+|+.+++++
T Consensus        99 ~~~~~~~~v~~l~~~l~~~~q~~~~--~~~~rP~~--v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~  174 (253)
T PTZ00246         99 YTYGEPQPVEQLVVQICDLKQSYTQ--FGGLRPFG--VSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSI  174 (253)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcc--ccCcccCC--EEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHH
Confidence            9999999999999999999999999  88999998  5689999996578999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC------eEEeChhHHHHHHHHHhcCC
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG------WQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G------~~~l~~~eI~~~l~~~~~~~  306 (312)
                      ||++|+++|++|||++++++||+.+.++|..++++++|++|+++|      +++++++||++++..++++.
T Consensus       175 Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~~~  245 (253)
T PTZ00246        175 LKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQEY  245 (253)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999874      89999999999999987654

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=7e-44  Score=317.02  Aligned_cols=193  Identities=22%  Similarity=0.255  Sum_probs=181.4

Q ss_pred             cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210          4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP   83 (312)
Q Consensus         4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (312)
                      ||||+|||+++||||||+|+|.++|.++.++..+|                                             
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~K---------------------------------------------   35 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVER---------------------------------------------   35 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCc---------------------------------------------
Confidence            79999999999999999999999899999998888                                             


Q ss_pred             CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhh-hhhh
Q psy14210         84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECK-GYEC  162 (312)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~-~~~~  162 (312)
                                                                  ||+|++|++|+++|+.+|++.+++++|.+++ .|++
T Consensus        36 --------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~   71 (197)
T cd03760          36 --------------------------------------------IFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECL   71 (197)
T ss_pred             --------------------------------------------EEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHH
Confidence                                                        9999999999999999999999999999986 5667


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      .++.+++++.+++++++++|.++.    ++|||+  +++|+||||++++|+||++||+|++.++++.|+|+|+.+++++|
T Consensus        72 ~~~~~~~~~~la~~i~~~~y~~~~----~~rP~~--v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L  145 (197)
T cd03760          72 DDGHSLSPKEIHSYLTRVLYNRRS----KMNPLW--NTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLL  145 (197)
T ss_pred             hCCCCCCHHHHHHHHHHHHHHHhh----cCCCce--EEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHH
Confidence            899999999999999999876553    689998  46899999975789999999999999999999999999999999


Q ss_pred             HhhCCC--CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeC
Q psy14210        243 DTDYRP--DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL  291 (312)
Q Consensus       243 e~~y~~--~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~  291 (312)
                      |++|++  +||+|||++++++||+.+.+||..++++++|++|+++|+++..
T Consensus       146 e~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~  196 (197)
T cd03760         146 REAWEKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIEG  196 (197)
T ss_pred             HhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeCC
Confidence            999999  9999999999999999999999999999999999999988654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=1.2e-43  Score=315.27  Aligned_cols=189  Identities=20%  Similarity=0.244  Sum_probs=178.9

Q ss_pred             cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210          4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP   83 (312)
Q Consensus         4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (312)
                      +|||++||+++||||||+|+|.+++.++.++.++|                                             
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~K---------------------------------------------   36 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQK---------------------------------------------   36 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccccCCEeEecCCCe---------------------------------------------
Confidence            69999999999999999999999987777877888                                             


Q ss_pred             CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210         84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK  163 (312)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~  163 (312)
                                                                  ||+|++|++|+++|..+|++.++++++.+++.|+++
T Consensus        37 --------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~   72 (195)
T cd03759          37 --------------------------------------------VFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLR   72 (195)
T ss_pred             --------------------------------------------EEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHH
Confidence                                                        999999999999999999999999999999999999


Q ss_pred             cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC-eeeEccChHHHHHHH
Q psy14210        164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAIL  242 (312)
Q Consensus       164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~L  242 (312)
                      ++++++++.+|+++++++|.++.      +||+  +++||||||++++|+||++||+|++.+++ +.|+|+|+.+++++|
T Consensus        73 ~~~~~~~~~la~~l~~~ly~~r~------~P~~--v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~L  144 (195)
T cd03759          73 EEREIKPKTFSSLISSLLYEKRF------GPYF--VEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMC  144 (195)
T ss_pred             hCCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHH
Confidence            99999999999999999988654      7988  46899999975689999999999998887 889999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ  289 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~  289 (312)
                      |+.|+++||+|||++++++||+.+.+||+.++++++|++|+++|+++
T Consensus       145 e~~~~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~  191 (195)
T cd03759         145 ESLWRPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDKVTT  191 (195)
T ss_pred             HhccCCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEE
Confidence            99999999999999999999999999999999999999999999865

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=3e-43  Score=316.57  Aligned_cols=193  Identities=24%  Similarity=0.260  Sum_probs=182.1

Q ss_pred             CcccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210          1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF   80 (312)
Q Consensus         1 ~~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      +..+|||+|||+++||||||+|+|.++|.++.++.++|                                          
T Consensus         4 ~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~K------------------------------------------   41 (212)
T cd03757           4 YTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPK------------------------------------------   41 (212)
T ss_pred             ccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCe------------------------------------------
Confidence            34689999999999999999999999998888888888                                          


Q ss_pred             CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210         81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~  160 (312)
                                                                     ||+|++|++|+++|..+|++.+.++++.+++.|
T Consensus        42 -----------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~   74 (212)
T cd03757          42 -----------------------------------------------IFKLTDKCVLGSSGFQADILALTKRLKARIKMY   74 (212)
T ss_pred             -----------------------------------------------EEEcCCCEEEEccchHHHHHHHHHHHHHHHHHH
Confidence                                                           999999999999999999999999999999999


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      ++.++++++++.+++++++++|.+|.      +||+  +++||||||++++|+||++||+|++.+++++|+|+|+.++++
T Consensus        75 ~~~~g~~i~~~~la~~ls~~ly~~R~------~P~~--~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~  146 (212)
T cd03757          75 KYSHNKEMSTEAIAQLLSTILYSRRF------FPYY--VFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQP  146 (212)
T ss_pred             hHHhCCCCCHHHHHHHHHHHHHhhcC------CCeE--EEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHH
Confidence            99999999999999999999998654      7988  568999999756799999999999999999999999999999


Q ss_pred             HHHhhCC---------CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        241 ILDTDYR---------PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       241 ~Le~~y~---------~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      +||+.|+         ++||+|||++++++||+.+.+||+.++++++|++|+++|+++.
T Consensus       147 ~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~  205 (212)
T cd03757         147 LLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEE  205 (212)
T ss_pred             HHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEE
Confidence            9999985         8999999999999999999999999999999999999998654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=1.9e-42  Score=316.86  Aligned_cols=205  Identities=24%  Similarity=0.377  Sum_probs=193.1

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|+|+||++++||||||+|+|.+ +.++.++..+|                                           
T Consensus        33 v~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~K-------------------------------------------   68 (241)
T PRK03996         33 VKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEK-------------------------------------------   68 (241)
T ss_pred             HHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccce-------------------------------------------
Confidence            3579999999999999999999999 47777777777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|+++++|+++|+.+|++.++++++.+++.|+
T Consensus        69 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~  102 (241)
T PRK03996         69 ----------------------------------------------IFKIDDHIGAASAGLVADARVLIDRARVEAQINR  102 (241)
T ss_pred             ----------------------------------------------EEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  +++.|||++  ++||||||+ .+|+||.+||+|++.+++++|+|+|+.+++++
T Consensus       103 ~~~~~~i~~~~la~~ls~~~~~~~~--~~~~rP~~~--~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~  177 (241)
T PRK03996        103 LTYGEPIGVETLTKKICDHKQQYTQ--HGGVRPFGV--ALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEF  177 (241)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHhcC--CCCccchhe--EEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHH
Confidence            9999999999999999999999998  889999984  689999997 78999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDR  302 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~  302 (312)
                      ||+.|+++|++|||++++++||+.+.++ ..++++++|++++++|  ++.++++|++++++++
T Consensus       178 Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~  239 (241)
T PRK03996        178 LEKNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL  239 (241)
T ss_pred             HHHhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence            9999999999999999999999999875 4688999999999986  9999999999999875

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=1.8e-42  Score=304.60  Aligned_cols=185  Identities=36%  Similarity=0.528  Sum_probs=178.3

Q ss_pred             CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCC
Q psy14210          5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPP   84 (312)
Q Consensus         5 g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
                      |||+|||+++||||||+|+|.++|.++.+++++|                                              
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~K----------------------------------------------   34 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKK----------------------------------------------   34 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCccc----------------------------------------------
Confidence            8999999999999999999999999999999899                                              


Q ss_pred             CCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         85 LSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                 ||+|+++++++++|..+|++.+.++++.+++.|++.+
T Consensus        35 -------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~   71 (185)
T TIGR03634        35 -------------------------------------------VFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRR   71 (185)
T ss_pred             -------------------------------------------EEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                       9999999999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT  244 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~  244 (312)
                      +++++++.+++++++++|.++.      |||+  +++|+||||+ ++|+||.+||+|++.++++.++|+|+.+++++||+
T Consensus        72 ~~~~~~~~~a~~l~~~~~~~~~------rP~~--v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~  142 (185)
T TIGR03634        72 GRPMSVKALATLLSNILNSNRF------FPFI--VQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLED  142 (185)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCC------CCeE--EEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHh
Confidence            9999999999999999998754      9988  5689999997 68999999999999999999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCe
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW  287 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~  287 (312)
                      .|+++||++||++++++||+.+.+||..++++++|++|+++|+
T Consensus       143 ~~~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~  185 (185)
T TIGR03634       143 EYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV  185 (185)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence            9999999999999999999999999999999999999999985

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>KOG0175|consensus

Probab=100.00  E-value=2.2e-43  Score=314.94  Aligned_cols=204  Identities=47%  Similarity=0.796  Sum_probs=198.5

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+|++|||+|+|+|+|+|++|.++.++|                                           
T Consensus        68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~K-------------------------------------------  104 (285)
T KOG0175|consen   68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKK-------------------------------------------  104 (285)
T ss_pred             ecCCceEEEEEecCcEEEEEeccccccceeechhhce-------------------------------------------
Confidence            5689999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++||++++-+++|-+||+|++-+.|..+|++|+
T Consensus       105 ----------------------------------------------VIeIn~ylLGTmAGgAADCqfWer~L~kecRL~e  138 (285)
T KOG0175|consen  105 ----------------------------------------------VIEINPYLLGTMAGGAADCQFWERVLAKECRLHE  138 (285)
T ss_pred             ----------------------------------------------eeeechhhhhcccCcchhhHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      +++++.|+|..++++|++++|+|+-        +|++++.+|+|||+ .||.||++|..|+...-+-+++|||+.+|+++
T Consensus       139 LRnkeriSVsaASKllsN~~y~YkG--------mGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGV  209 (285)
T KOG0175|consen  139 LRNKERISVSAASKLLSNMVYQYKG--------MGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGV  209 (285)
T ss_pred             HhcCcceehHHHHHHHHHHHhhccC--------cchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEe
Confidence            9999999999999999999999998        78999999999998 89999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHh
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~  303 (312)
                      |++.|++|||.|||.+|+++++..|..||..+|+.++++.|+++||.+++..++.++...+.
T Consensus       210 LDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~~L~~~~~  271 (285)
T KOG0175|consen  210 LDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVSELHYHYY  271 (285)
T ss_pred             eccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999976654

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=3.8e-42  Score=303.40  Aligned_cols=188  Identities=34%  Similarity=0.530  Sum_probs=180.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|.++|.++.+++.+|                                               
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~K-----------------------------------------------   33 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKK-----------------------------------------------   33 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCccc-----------------------------------------------
Confidence            799999999999999999999999999999899                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|+++++++++|+.+|++.+.+.++.+++.|++.++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (188)
T cd03764          34 ------------------------------------------IFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRG   71 (188)
T ss_pred             ------------------------------------------EEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.++.      |||+  +++|+||||+ ++|+||.+||+|++.++++.|+|+|+.+++++||+.
T Consensus        72 ~~~~~~~l~~~i~~~~~~~~~------~P~~--~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~  142 (188)
T cd03764          72 RPMSIKALATLLSNILNSSKY------FPYI--VQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDE  142 (188)
T ss_pred             CCCCHHHHHHHHHHHHHhcCC------CCcE--EEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhc
Confidence            999999999999999999765      9988  4689999998 789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeC
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL  291 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~  291 (312)
                      |+++|++|||++++++||+.+.+||+.++++++|++++++|+++++
T Consensus       143 ~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~~~  188 (188)
T cd03764         143 YKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKELE  188 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEeCC
Confidence            9999999999999999999999999999999999999999998764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=6.3e-42  Score=302.48  Aligned_cols=188  Identities=26%  Similarity=0.373  Sum_probs=179.7

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|.++|.++.++..+|                                               
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~K-----------------------------------------------   33 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEK-----------------------------------------------   33 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccc-----------------------------------------------
Confidence            799999999999999999999999999988888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|+++|..+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (189)
T cd03763          34 ------------------------------------------IHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTG   71 (189)
T ss_pred             ------------------------------------------eEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.++.       ||+  +++|+||||+ ++|+||.+||+|++.++++.|+|+++.+++++||++
T Consensus        72 ~~~~~~~~a~~l~~~l~~~~~-------p~~--v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~  141 (189)
T cd03763          72 RKPRVVTALTMLKQHLFRYQG-------HIG--AALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDR  141 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHcCC-------ccc--eeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhh
Confidence            999999999999999997643       877  5789999997 689999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeCh
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS  292 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~  292 (312)
                      |+++||++||++++++||+.+.+||+.++++++|++|+++|+++..|
T Consensus       142 ~~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~~  188 (189)
T cd03763         142 YKPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEYLRN  188 (189)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEEecC
Confidence            99999999999999999999999999999999999999999998765

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=6.4e-42  Score=301.94  Aligned_cols=186  Identities=27%  Similarity=0.414  Sum_probs=177.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+||++++||||||+|+|.++|.++.+++++|                                               
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~K-----------------------------------------------   33 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDK-----------------------------------------------   33 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCccc-----------------------------------------------
Confidence            799999999999999999999999999888888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|+++|+.+|++.+.++++.+++.|++.++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~   71 (188)
T cd03762          34 ------------------------------------------LTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELG   71 (188)
T ss_pred             ------------------------------------------EEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.+|       |||+  +++||||||++++|+||++||+|++.++++.++|+|+.+++++||+.
T Consensus        72 ~~~~~~~~a~~l~~~~~~~~-------~~~~--~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~  142 (188)
T cd03762          72 EPPLVKTAASLFKNLCYNYK-------EMLS--AGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDAN  142 (188)
T ss_pred             CCCCHHHHHHHHHHHHHhcc-------ccce--eeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhc
Confidence            99999999999999999876       4676  57899999975789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ  289 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~  289 (312)
                      |+++||++||++++++||+.+.+||+.++++++|++|+++|+++
T Consensus       143 ~~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~  186 (188)
T cd03762         143 YKPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER  186 (188)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence            99999999999999999999999999999999999999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=5.3e-42  Score=310.66  Aligned_cols=197  Identities=26%  Similarity=0.433  Sum_probs=185.9

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|+|+|||+++||||||+|+|.+ +.++.++..+|                                           
T Consensus        26 v~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~K-------------------------------------------   61 (224)
T TIGR03633        26 VKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEK-------------------------------------------   61 (224)
T ss_pred             HHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccce-------------------------------------------
Confidence            4689999999999999999999998 46777777777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|+++++|++||+.+|++.+.+.++.+++.|+
T Consensus        62 ----------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~   95 (224)
T TIGR03633        62 ----------------------------------------------IFKIDDHIGAATSGLVADARVLIDRARIEAQINR   95 (224)
T ss_pred             ----------------------------------------------EEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  .++.|||+  +++||||||+ ++|+||.+||.|++.+++++|+|+|+.+++++
T Consensus        96 ~~~~~~~~~~~la~~ls~~l~~~~~--~~~~rP~~--v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~  170 (224)
T TIGR03633        96 LTYGEPIDVETLAKKICDLKQQYTQ--HGGVRPFG--VALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEF  170 (224)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcC--CCCccccc--eEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHH
Confidence            9999999999999999999999998  88899998  5689999996 78999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRD  294 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~e  294 (312)
                      ||+.|+++|++|||++++++||+.+.+ |+.+++.++|++|+++|  ++.++++|
T Consensus       171 L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~  224 (224)
T TIGR03633       171 LEKEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE  224 (224)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence            999999999999999999999999887 88899999999999987  89888775

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=3.9e-41  Score=302.94  Aligned_cols=188  Identities=23%  Similarity=0.342  Sum_probs=178.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|+|+|||+++||||||+|+|.+++.++.++..+|                                           
T Consensus        26 ~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~K-------------------------------------------   62 (213)
T cd03752          26 ISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEK-------------------------------------------   62 (213)
T ss_pred             HhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcce-------------------------------------------
Confidence            3579999999999999999999999977777778888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|++||+.+|++.+.+++|.+++.|+
T Consensus        63 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~   96 (213)
T cd03752          63 ----------------------------------------------IYKIDDHIACAVAGITSDANILINYARLIAQRYL   96 (213)
T ss_pred             ----------------------------------------------EEEecCCEEEEEecChHhHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++.++.+++.+++  +++.|||+  +++|++|||++.+|+||.+||+|++.+++++|+|+++.+++++
T Consensus        97 ~~~~~~i~v~~la~~ls~~~~~~t~--~~~~RP~~--v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~  172 (213)
T cd03752          97 YSYQEPIPVEQLVQRLCDIKQGYTQ--YGGLRPFG--VSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSL  172 (213)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhc--CCCcccce--eEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHH
Confidence            9999999999999999999999998  89999998  5689999997578999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      ||++|+++||+|||++++++||..+.+||..++.+++|+++
T Consensus       173 Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~  213 (213)
T cd03752         173 LKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL  213 (213)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence            99999999999999999999999999999889999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=1e-40  Score=293.73  Aligned_cols=188  Identities=37%  Similarity=0.568  Sum_probs=180.1

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+||++++||||||+|+|.++|.++.++..+|                                               
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~K-----------------------------------------------   33 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDK-----------------------------------------------   33 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCc-----------------------------------------------
Confidence            799999999999999999999998887888888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++++++|+.+|++.+.++++.+++.|++.++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (189)
T cd01912          34 ------------------------------------------IFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNG   71 (189)
T ss_pred             ------------------------------------------EEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.+++      |||+  +++||||||++++|+||.+||+|++.+++++++|+++.+++++||+.
T Consensus        72 ~~~~~~~l~~~l~~~~~~~~~------~P~~--~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~  143 (189)
T cd01912          72 RELSVKAAANLLSNILYSYRG------FPYY--VSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRG  143 (189)
T ss_pred             CCCCHHHHHHHHHHHHHhcCC------CCeE--EEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhc
Confidence            999999999999999999887      8988  56899999976789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      |+++||+|||++++++||+.+.+||+.++++++|++|+++|++..
T Consensus       144 ~~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~  188 (189)
T cd01912         144 YKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEEL  188 (189)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence            999999999999999999999999999999999999999998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=2.3e-40  Score=302.03  Aligned_cols=158  Identities=21%  Similarity=0.224  Sum_probs=144.9

Q ss_pred             EEEec----CeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCC-ccCHHHHHHHHHHHHHHhccCCCCC-----CCCCCc
Q psy14210        128 VIPVS----SSILCTLAGNAADCVYWLHSLAKECKGYECKYRT-GMTIRHAANLLVNMVRKYRTGNHSS-----KIPNGL  197 (312)
Q Consensus       128 I~~I~----d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~-~i~v~~la~~ls~~l~~~~~~~~~~-----~rP~gl  197 (312)
                      ||+|+    +|++|+.||+.||++.+++++|.+++.|++++++ +++++.+|++++++++.+.+. +.+     .|||+ 
T Consensus        33 I~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~~~~q-~~~~~~~~~rp~g-  110 (236)
T cd03765          33 MFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLREVQEQ-DREALKKAGIDFS-  110 (236)
T ss_pred             EEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHHHHhh-cccccccCCcceE-
Confidence            99998    8999999999999999999999999999999999 899999999999997654431 443     48998 


Q ss_pred             ccceeeeEEecCCCCeEEEEcCCceEEec----CeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcC
Q psy14210        198 SFGTLMAAYDEILGPQLYMLDNTGLLIEG----TKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHS  273 (312)
Q Consensus       198 s~~~IIaG~D~~~gp~Ly~iDpsGs~~e~----~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~s  273 (312)
                       +++||||||++.||+||++||+|++.++    +++|+|. +.+++++||++|+++||+|||++++++||..+++||..+
T Consensus       111 -vslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~s  188 (236)
T cd03765         111 -ASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAKCALVSMDSTMRSNLSV  188 (236)
T ss_pred             -EEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence             5789999996578999999999999999    4589996 799999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEECCCeEE
Q psy14210        274 GGCVRLYKINGQGWQQ  289 (312)
Q Consensus       274 g~~ieI~iItk~G~~~  289 (312)
                      +++|+|++|+++|++.
T Consensus       189 g~~iev~vI~k~G~~~  204 (236)
T cd03765         189 GPPLDLLVYERDSLQV  204 (236)
T ss_pred             CCCEEEEEEECCCeee
Confidence            9999999999999765

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=2.3e-40  Score=297.97  Aligned_cols=185  Identities=24%  Similarity=0.318  Sum_probs=174.1

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|+|+|||+++||||||+|+|.++ .++..+..+|                                            
T Consensus        28 ~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~K--------------------------------------------   62 (212)
T cd03751          28 ENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKR--------------------------------------------   62 (212)
T ss_pred             hcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcc--------------------------------------------
Confidence            5799999999999999999999986 7777777777                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|++|++|+++|+.+|++.+.++++.+++.|++
T Consensus        63 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~   97 (212)
T cd03751          63 ---------------------------------------------IFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRD   97 (212)
T ss_pred             ---------------------------------------------eeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      .++++++++.++++|++++|.+++  ++++|||+  +++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++|
T Consensus        98 ~~~~~~~v~~la~~ls~~~~~~t~--~~~~rP~~--vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~L  172 (212)
T cd03751          98 NYGTPIPVKVLADRVAMYMHAYTL--YSSVRPFG--CSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTEL  172 (212)
T ss_pred             HHCCCCCHHHHHHHHHHHHHHhcc--CCCcCCce--EEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHH
Confidence            999999999999999999999999  88999998  4689999997 689999999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      |++|+++||+|||+++++++|+.+++.+...+.++||+++
T Consensus       173 ek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~  212 (212)
T cd03751         173 EKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV  212 (212)
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence            9999999999999999999999999866567789999874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=2.8e-40  Score=296.13  Aligned_cols=184  Identities=18%  Similarity=0.357  Sum_probs=172.3

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|+|+|||+++||||||+|+|.+. .++.++..+|                                           
T Consensus        24 v~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~K-------------------------------------------   59 (207)
T cd03755          24 VRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRK-------------------------------------------   59 (207)
T ss_pred             HHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCc-------------------------------------------
Confidence            46899999999999999999999766 5766666677                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|+.+|++.+.++++.+++.|+
T Consensus        60 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~   93 (207)
T cd03755          60 ----------------------------------------------ICMLDDHVCLAFAGLTADARVLINRARLECQSHR   93 (207)
T ss_pred             ----------------------------------------------EEEECCCEEEEEecchhhHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  +++.|||++  ++||+|||++++|+||++||+|++.+++++|+|+|+.+++++
T Consensus        94 ~~~~~~i~~~~la~~ls~~~~~y~~--~~~~rP~~v--s~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~  169 (207)
T cd03755          94 LTVEDPVTVEYITRYIAGLQQRYTQ--SGGVRPFGI--STLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREF  169 (207)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhc--ccCccccee--EEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHH
Confidence            9999999999999999999999998  888999984  689999997569999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      ||++|+++||+|||++++++||..+.+   .++.++||+++
T Consensus       170 Le~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~  207 (207)
T cd03755         170 LEKNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM  207 (207)
T ss_pred             HHhhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence            999999999999999999999999986   57889999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=4.4e-40  Score=295.58  Aligned_cols=186  Identities=26%  Similarity=0.420  Sum_probs=176.3

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|+|+||++++||||||+|+|.+ +.++.+++.+|                                           
T Consensus        25 v~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~K-------------------------------------------   60 (211)
T cd03756          25 VKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEK-------------------------------------------   60 (211)
T ss_pred             HHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccce-------------------------------------------
Confidence            4689999999999999999999997 47777777778                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|+++++|+++|+.+|++.+.+.++.+++.|+
T Consensus        61 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~   94 (211)
T cd03756          61 ----------------------------------------------IYKIDDHVGAATSGLVADARVLIDRARVEAQIHR   94 (211)
T ss_pred             ----------------------------------------------EEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  +++.|||+  +++||+|||+ .+|+||.+||+|++.+++++++|+|+.+++++
T Consensus        95 ~~~~~~~~~~~la~~ls~~~~~~~~--~~~~rP~~--v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~  169 (211)
T cd03756          95 LTYGEPIDVEVLVKKICDLKQQYTQ--HGGVRPFG--VALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEF  169 (211)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcC--CCCeechh--EEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHH
Confidence            9999999999999999999999998  88899998  4689999997 78999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN  283 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt  283 (312)
                      ||++|+++|++|||++++++||..+.++|. ++++++|++|+
T Consensus       170 Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~  210 (211)
T cd03756         170 LEKEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT  210 (211)
T ss_pred             HHhhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence            999999999999999999999999998775 89999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=8.6e-40  Score=293.16  Aligned_cols=186  Identities=25%  Similarity=0.446  Sum_probs=175.5

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||++|++++||||||+|+|.+. +++..+..+|                                           
T Consensus        24 ~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~K-------------------------------------------   59 (209)
T cd01911          24 VKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEK-------------------------------------------   59 (209)
T ss_pred             HHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccce-------------------------------------------
Confidence            36899999999999999999999996 5666667777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|+++++|+++|..+|++.+.+.++.+++.|+
T Consensus        60 ----------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~   93 (209)
T cd01911          60 ----------------------------------------------IFKIDDHIGCAVAGLTADARVLVNRARVEAQNYR   93 (209)
T ss_pred             ----------------------------------------------EEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      +.++++++++.+|++++++++.+++  ++++|||+  +++||+|||++++|+||.+||.|++.+++++++|+|+.+++++
T Consensus        94 ~~~g~~~~~~~la~~ls~~~~~~~~--~~~~rP~~--v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~  169 (209)
T cd01911          94 YTYGEPIPVEVLVKRIADLAQVYTQ--YGGVRPFG--VSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTF  169 (209)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhc--ccCccChh--heEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHH
Confidence            9999999999999999999999998  88899988  5689999998569999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      ||+.|+++|+++||++++++||+.+.+||. +++.++|+++
T Consensus       170 L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~  209 (209)
T cd01911         170 LEKRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV  209 (209)
T ss_pred             HHHhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence            999999999999999999999999999998 9999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=8.1e-40  Score=287.34  Aligned_cols=188  Identities=34%  Similarity=0.554  Sum_probs=177.5

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCccccccc-ccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQK-LNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF   80 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      +.+|||+|||+++|||+||+|+|.++|+.+.++. ++|                                          
T Consensus         1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~k------------------------------------------   38 (190)
T PF00227_consen    1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDK------------------------------------------   38 (190)
T ss_dssp             HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSS------------------------------------------
T ss_pred             CCCCeEEEEEEECCEEEEEEccccccccccccccccce------------------------------------------
Confidence            3689999999999999999999999999886665 677                                          


Q ss_pred             CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210         81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~  160 (312)
                                                                     ||+|++|++++++|..+|++.+.++++.+++.|
T Consensus        39 -----------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~   71 (190)
T PF00227_consen   39 -----------------------------------------------IFKINDNIIIGFSGLTADFQYLIRRLREEAQEY   71 (190)
T ss_dssp             -----------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------eeeccCcceeeccccccchHHHHhhhcccchhh
Confidence                                                           999999999999999999999999999999999


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec-CeeeEccChHHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG-TKFCVGSGAEYAQ  239 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~-~~~AiGsGs~~a~  239 (312)
                      ++.++.+++++.+++.+++.++.+++  +.++|||+  +++|+||||+.++|+||.+||+|++.++ +++++|+|+.+++
T Consensus        72 ~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~p~~--~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~  147 (190)
T PF00227_consen   72 RFSYGRPISPEYLAKAIASLIQNYTY--RSGRRPYG--VSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQ  147 (190)
T ss_dssp             HHHHSSGTCHHHHHHHHHHHHHHHHH--HTTTSTTS--EEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHH
T ss_pred             hhccCccccchhhhhhhHHHHhhhcc--cccccCcc--ccceeeeeccccccceeeeccccccccccccccchhcchhhh
Confidence            99999999999999999999999888  77889988  5689999998566999999999999999 6999999999999


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       240 ~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      ++||+.|+++||++||++++++||+.+.++|..++++++|++|
T Consensus       148 ~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi  190 (190)
T PF00227_consen  148 PILEKLYKPDLSLEEAIELALKALKEAIDRDILSGDNIEVAVI  190 (190)
T ss_dssp             HHHHHHHTTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence            9999999999999999999999999999999999999999986

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>KOG0176|consensus

Probab=100.00  E-value=8e-40  Score=282.48  Aligned_cols=206  Identities=23%  Similarity=0.404  Sum_probs=192.6

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +..|+|.+|++.++|||||+++|.|+ .+..+.+++|                                           
T Consensus        31 ikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveK-------------------------------------------   66 (241)
T KOG0176|consen   31 IKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEK-------------------------------------------   66 (241)
T ss_pred             HhcCCceeeeeccceEEEEEeccccC-cccCchhhhh-------------------------------------------
Confidence            35799999999999999999999999 9999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++||+|++||+.+|++.++++.|.++++|.
T Consensus        67 ----------------------------------------------i~eid~HIgca~SGl~aDarTlve~arv~~qnh~  100 (241)
T KOG0176|consen   67 ----------------------------------------------IVEIDDHIGCAMSGLIADARTLVERARVETQNHW  100 (241)
T ss_pred             ----------------------------------------------heehhhceeeeccccccchHHHHHHHHHHhhhce
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCC---CCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGN---HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYA  238 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~---~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a  238 (312)
                      +.|+++++++.+.+.++++-.++..++   ..-.||||+  ++|+||+|+ .+|+||+.||+|+++.+++-|||+|+..+
T Consensus       101 f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGV--alliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga  177 (241)
T KOG0176|consen  101 FTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGV--ALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGA  177 (241)
T ss_pred             eecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcce--EEEEeeccC-CCceEEEeCCCCceEEecceeccccchHH
Confidence            999999999999999999999888742   112699995  689999997 89999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHH
Q psy14210        239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYND  301 (312)
Q Consensus       239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~  301 (312)
                      ++.|++.|+++|+++||+.++++.|+.+++.. .+.+|+++.+++++ ++++++++|++.++++
T Consensus       178 ~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~  240 (241)
T KOG0176|consen  178 ESSLQEEYHKDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR  240 (241)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence            99999999999999999999999999999866 56799999999997 6999999999999875

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=1.6e-39  Score=292.26  Aligned_cols=152  Identities=22%  Similarity=0.321  Sum_probs=145.3

Q ss_pred             eEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEE
Q psy14210        127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAY  206 (312)
Q Consensus       127 KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~  206 (312)
                      |||+|++|++|++||+.+|++.+.++++.+++.|+++++++++++.+++++++++|.+++  +++.|||+  +++||+||
T Consensus        57 KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~--~~~~rP~~--v~~ii~G~  132 (211)
T cd03749          57 KIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQ--RYGRRPYG--VGLLIAGY  132 (211)
T ss_pred             cEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhc--ccCCCCce--EEEEEEEE
Confidence            499999999999999999999999999999999999999999999999999999999998  88899998  46899999


Q ss_pred             ecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEEE
Q psy14210        207 DEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRDI-HSGGCVRLYKIN  283 (312)
Q Consensus       207 D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~--~~ms~eEAi~la~kaL~~a~~rD~-~sg~~ieI~iIt  283 (312)
                      |+ .||+||++||+|++.+++++|+|+|+.+++++||++|+  ++||+|||+++++++|+.++++|. .++++|||++|+
T Consensus       133 D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         133 DE-SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             cC-CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            97 68999999999999999999999999999999999999  599999999999999999999887 889999999983

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=2e-39  Score=292.44  Aligned_cols=184  Identities=22%  Similarity=0.342  Sum_probs=172.1

Q ss_pred             cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210          4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP   83 (312)
Q Consensus         4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (312)
                      +|||++||+++||||||+|+|.+. .++.++..+|                                             
T Consensus        28 ~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~K---------------------------------------------   61 (215)
T cd03754          28 AGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTH---------------------------------------------   61 (215)
T ss_pred             CCccEEEEEeCCEEEEEEeccccc-cccCCcccCc---------------------------------------------
Confidence            589999999999999999999887 5666666667                                             


Q ss_pred             CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210         84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK  163 (312)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~  163 (312)
                                                                  ||+|+++++|+++|+.+|++.+.+++|.+++.|+++
T Consensus        62 --------------------------------------------i~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~   97 (215)
T cd03754          62 --------------------------------------------LFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYK   97 (215)
T ss_pred             --------------------------------------------eEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHH
Confidence                                                        999999999999999999999999999999999999


Q ss_pred             cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHH
Q psy14210        164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD  243 (312)
Q Consensus       164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le  243 (312)
                      ++++++++.+|+++++++|.+++  +++.|||+  +++||||||++++|+||++||+|++.+++++|+|+|+.+++++||
T Consensus        98 ~~~~i~v~~la~~ls~~~q~yt~--~~~~RP~~--v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le  173 (215)
T cd03754          98 YGYEMPVDVLAKRIADINQVYTQ--HAYMRPLG--VSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLE  173 (215)
T ss_pred             HCCCCCHHHHHHHHHHHHHHHhC--CCCCcCCe--eEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHH
Confidence            99999999999999999999998  78899999  568999999757999999999999999999999999999999999


Q ss_pred             hhCCCC--C--CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        244 TDYRPD--L--SEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       244 ~~y~~~--m--s~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      ++|+++  |  |+|||++++++||..+.+||. +++++||+++
T Consensus       174 ~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~  215 (215)
T cd03754         174 KKLKKKPDLIESYEETVELAISCLQTVLSTDF-KATEIEVGVV  215 (215)
T ss_pred             HHhccccccCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence            999985  7  999999999999999999995 5899999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0174|consensus

Probab=100.00  E-value=1e-39  Score=281.13  Aligned_cols=199  Identities=28%  Similarity=0.431  Sum_probs=186.3

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.||||++|++|+|||||+||+|+|.|.+|.+|..+|                                           
T Consensus        16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDK-------------------------------------------   52 (224)
T KOG0174|consen   16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDK-------------------------------------------   52 (224)
T ss_pred             cccCceEEEEEEcCcEEEeccCCccchHHHHhhhccc-------------------------------------------
Confidence            4789999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    +.+|+|+|+||.||.+||.|.+.+.++..+..|.
T Consensus        53 ----------------------------------------------lT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~   86 (224)
T KOG0174|consen   53 ----------------------------------------------LTPITDNIYCCRSGSAADTQAIADIVRYHLELYT   86 (224)
T ss_pred             ----------------------------------------------ceeccccEEEecCCchhhHHHHHHHHHHHHHHhh
Confidence                                                          7899999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      .+++.++++...|+.++++.|+|+.         .+++++|+||||+..|.++|.+-.-|++.+.++..-||||.|++++
T Consensus        87 ~q~~~~p~v~~aA~l~r~~~Y~~re---------~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf  157 (224)
T KOG0174|consen   87 IQENKPPLVHTAASLFREICYNYRE---------MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGF  157 (224)
T ss_pred             hhcCCCchHHHHHHHHHHHHHhCHH---------hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeee
Confidence            9999999999999999999999998         2778999999999889999999888888887777778999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE--eChhHHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ--VLSRDVKDI  298 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~--l~~~eI~~~  298 (312)
                      ++.+|+++||+||+++++++|+..|++||-.+|+.|++.+|+++|+++  +..+++..+
T Consensus       158 ~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~  216 (224)
T KOG0174|consen  158 CDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQF  216 (224)
T ss_pred             ehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccc
Confidence            999999999999999999999999999999999999999999999754  466665544

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=7.5e-39  Score=287.96  Aligned_cols=187  Identities=27%  Similarity=0.442  Sum_probs=172.0

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+||++++||||||+|+|.++ .++.++.++|                                           
T Consensus        24 ~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~K-------------------------------------------   59 (213)
T cd03753          24 IKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEK-------------------------------------------   59 (213)
T ss_pred             HhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccce-------------------------------------------
Confidence            46899999999999999999999986 5677777777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|+++++|+++|+.+|++.+.+.++.+++.|+
T Consensus        60 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~   93 (213)
T cd03753          60 ----------------------------------------------IMEIDDHIGCAMSGLIADARTLIDHARVEAQNHR   93 (213)
T ss_pred             ----------------------------------------------EEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCC---CCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGN---HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYA  238 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~---~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a  238 (312)
                      +.++++++++.+++++++++|.+++..   ++..|||+  +++||||||+ .+|+||.+||+|++.+++++|+|++++++
T Consensus        94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~--v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~  170 (213)
T cd03753          94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFG--VALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGA  170 (213)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccce--EEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHH
Confidence            999999999999999999999988621   22469988  5689999997 78999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      +++|+++|+++||+|||++++++||+.+.+++ .++++++|+++
T Consensus       171 ~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~  213 (213)
T cd03753         171 QSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV  213 (213)
T ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            99999999999999999999999999988766 78899999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=1.5e-38  Score=277.47  Aligned_cols=182  Identities=37%  Similarity=0.571  Sum_probs=173.8

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+||++++||||||+|+|.++|..+.+++.+|                                               
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~K-----------------------------------------------   33 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEK-----------------------------------------------   33 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcce-----------------------------------------------
Confidence            799999999999999999999988877888888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|+++|..+|++.+.+.++.++..|++.++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (182)
T cd01906          34 ------------------------------------------IFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYG   71 (182)
T ss_pred             ------------------------------------------EEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.+++  +  +|||+  +++|+||||++.+|+||.+||+|++.+++++++|+|+.+++++||+.
T Consensus        72 ~~~~~~~l~~~l~~~~~~~~~--~--~~p~~--~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~  145 (182)
T cd01906          72 EPIPVEALAKLLANLLYEYTQ--S--LRPLG--VSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKL  145 (182)
T ss_pred             CCCCHHHHHHHHHHHHHHhCC--C--ccChh--eEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHH
Confidence            999999999999999999998  4  89988  56899999975789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      |+++||++||++++++||+.+.++|..++.+++|++|
T Consensus       146 ~~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         146 YKPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence            9999999999999999999999999989999999875

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=2.2e-38  Score=288.06  Aligned_cols=167  Identities=15%  Similarity=0.170  Sum_probs=150.5

Q ss_pred             EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC-CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEE
Q psy14210        128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR-TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAY  206 (312)
Q Consensus       128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g-~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~  206 (312)
                      ||+|+||++|+++|+.+|++.+++.++.+++.|++.++ .+++++.+|+++++.+..+.   ++..|||++  ++|++||
T Consensus        53 I~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~---~~~~RP~gv--s~Li~G~  127 (228)
T TIGR03691        53 ISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIF---TEQQKPYEV--EICVAEV  127 (228)
T ss_pred             EEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhccccc---ccccCcceE--EEEEEEE
Confidence            99999999999999999999999999999999999998 68999999987777666544   235799995  6899999


Q ss_pred             ec-CCCCeEEEEcCCceEEecC-eeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH--HhcCcCCCcEEEEEE
Q psy14210        207 DE-ILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHAC--RRDIHSGGCVRLYKI  282 (312)
Q Consensus       207 D~-~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~--~rD~~sg~~ieI~iI  282 (312)
                      |+ +.+|+||.+||+|++.+++ ++|+|+|+..++++||++|+++||+|||++++++||+.+.  ++|..++.++||+++
T Consensus       128 d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii  207 (228)
T TIGR03691       128 GETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVL  207 (228)
T ss_pred             cCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEE
Confidence            85 4689999999999999976 7999999999999999999999999999999999999995  466789999999999


Q ss_pred             ECCC----eEEeChhHHHHHH
Q psy14210        283 NGQG----WQQVLSRDVKDIY  299 (312)
Q Consensus       283 tk~G----~~~l~~~eI~~~l  299 (312)
                      ++++    +++++++||++++
T Consensus       208 ~k~~~~~~f~~l~~~ei~~~l  228 (228)
T TIGR03691       208 DRSRPRRAFRRITGEALERLL  228 (228)
T ss_pred             eCCCCccceEECCHHHHHhhC
Confidence            9754    9999999999874

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>KOG0178|consensus

Probab=100.00  E-value=3.2e-37  Score=268.70  Aligned_cols=178  Identities=21%  Similarity=0.311  Sum_probs=167.4

Q ss_pred             ceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeE
Q psy14210        126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAA  205 (312)
Q Consensus       126 ~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG  205 (312)
                      +||++|+|+|+|+.+|+.+|+..|++++|..+|.|.++|++++|++.|+..++++.|.|||  |+|.||||+  ++|.+|
T Consensus        63 EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQ--ygG~RPFGV--SfLYaG  138 (249)
T KOG0178|consen   63 EKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQ--YGGKRPFGV--SFLYAG  138 (249)
T ss_pred             HHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhh--ccCcCCCce--eeeeec
Confidence            3499999999999999999999999999999999999999999999999999999999999  999999995  679999


Q ss_pred             EecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC
Q psy14210        206 YDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLS-EEEAYALATSAIYHACRRDIHSGGCVRLYKING  284 (312)
Q Consensus       206 ~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~~~ms-~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk  284 (312)
                      ||...|.+||+.||||++..|++.++|.++..++.+|++.|+.+.. ++||+.+|++.|..+.+.+..+...+||+.+++
T Consensus       139 wd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k  218 (249)
T KOG0178|consen  139 WDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITK  218 (249)
T ss_pred             eecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEe
Confidence            9997789999999999999999999999999999999999998755 999999999999999999989999999999998


Q ss_pred             CC----eEEeChhHHHHHHHHHhcCCC
Q psy14210        285 QG----WQQVLSRDVKDIYNDRKEAPP  307 (312)
Q Consensus       285 ~G----~~~l~~~eI~~~l~~~~~~~~  307 (312)
                      +.    ++++.++||.+++++..+..+
T Consensus       219 ~~~k~v~~i~~~~ev~kll~k~~~~~~  245 (249)
T KOG0178|consen  219 DCNKTVLKILKKDEVLKLLEKYHETQR  245 (249)
T ss_pred             cCCceEEEecCHHHHHHHHHHhhhhhh
Confidence            53    577899999999999876654

>KOG0181|consensus

Probab=100.00  E-value=1.4e-37  Score=268.14  Aligned_cols=204  Identities=20%  Similarity=0.377  Sum_probs=193.6

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +..|.|.+|++..||||||++++..+ .++....++|                                           
T Consensus        29 v~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~K-------------------------------------------   64 (233)
T KOG0181|consen   29 VVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRK-------------------------------------------   64 (233)
T ss_pred             HhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhh-------------------------------------------
Confidence            35789999999999999999998887 7888888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    +++|.+||+|..||+.+|++.+++..|+.++.|.
T Consensus        65 ----------------------------------------------V~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy   98 (233)
T KOG0181|consen   65 ----------------------------------------------VEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYY   98 (233)
T ss_pred             ----------------------------------------------HhhccCCcceEEecCCCceeehhhHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ..|++++++..+...++..+|+|||  ++|.||||  ++++|||||+ ++|.||++||+|+++.|+++|+|.+...++.+
T Consensus        99 ~vY~e~~pt~qlv~~~asvmQEyTq--sgGvrPFG--vslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktF  173 (233)
T KOG0181|consen   99 RVYGEPIPTTQLVQEVASVMQEYTQ--SGGVRPFG--VSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTF  173 (233)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHhh--cCCccccc--eEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHH
Confidence            9999999999999999999999999  99999999  4689999998 79999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYND  301 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~  301 (312)
                      ||++|.++|.+++++..|+..|++.++-. .+.++|||+++..++|++++++||++++..
T Consensus       174 lEkR~~edleldd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~lt~~eI~d~l~~  232 (233)
T KOG0181|consen  174 LEKRYNEDLELDDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRRLTPAEIEDYLAS  232 (233)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHhccc-cccCceEEEEecCCceeecCHHHHHHHHhc
Confidence            99999999999999999999999999766 577999999999999999999999999864

>KOG0185|consensus

Probab=100.00  E-value=2.7e-37  Score=272.92  Aligned_cols=210  Identities=21%  Similarity=0.282  Sum_probs=193.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.||||+||+||+||||||||++.|+|++.+.++++|                                           
T Consensus        38 ~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeR-------------------------------------------   74 (256)
T KOG0185|consen   38 IVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVER-------------------------------------------   74 (256)
T ss_pred             eeccceEEEEEecCceEEEecccccchhhhhhcCcee-------------------------------------------
Confidence            5799999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|+||++++++|..+|+|.+.+.|.....+.+
T Consensus        75 ----------------------------------------------i~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn  108 (256)
T KOG0185|consen   75 ----------------------------------------------IFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDN  108 (256)
T ss_pred             ----------------------------------------------eEEecCceEEecCccHHHHHHHHHHHHHHHhccc
Confidence                                                          8999999999999999999999999988766544


Q ss_pred             -hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        162 -CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       162 -~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                       +..++.+.|+.++.+|.++||.+|.    ++.|  +|..+++||+|+.+.|+|.++|..|..++.+..|+|.|.+.+++
T Consensus       109 ~~~Dg~~l~Pk~ih~yltrvlY~rRs----KmnP--lwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P  182 (256)
T KOG0185|consen  109 RLDDGQSLGPKAIHSYLTRVLYARRS----KMNP--LWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALP  182 (256)
T ss_pred             ccccccccChHHHHHHHHHHHHHhhh----ccCc--hhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhH
Confidence             5667899999999999999999998    6899  77899999999877899999999999999999999999999999


Q ss_pred             HHHhhCC---CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCC
Q psy14210        241 ILDTDYR---PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPP  307 (312)
Q Consensus       241 ~Le~~y~---~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~  307 (312)
                      +|++.|+   ++++.|||.+++.+||+.+++||+.+.++++|++|+++|++.-.+.+|+.- |.+++..-
T Consensus       183 ~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~p~qv~~~-W~fa~~~~  251 (256)
T KOG0185|consen  183 LLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISKPYQVKTN-WDFAETIK  251 (256)
T ss_pred             HHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecCceeeeec-chhhhhcc
Confidence            9999997   689999999999999999999999999999999999999999999888843 45554443

>KOG0183|consensus

Probab=100.00  E-value=1.4e-36  Score=265.34  Aligned_cols=206  Identities=18%  Similarity=0.370  Sum_probs=192.4

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +..|+|++|++.+|.|+|+.+++... .|...+.++|                                           
T Consensus        27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rk-------------------------------------------   62 (249)
T KOG0183|consen   27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRK-------------------------------------------   62 (249)
T ss_pred             HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhh-------------------------------------------
Confidence            35799999999999999999998665 8888888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |..+++|++|+++|+.+|++.+++++|.+|+.|+
T Consensus        63 ----------------------------------------------I~~ld~hV~mafaGl~aDArilinrArvecqShr   96 (249)
T KOG0183|consen   63 ----------------------------------------------ISMLDDHVVMAFAGLTADARILINRARVECQSHR   96 (249)
T ss_pred             ----------------------------------------------heeecceeeEEecCCCccceeehhhHhHhhhhhh
Confidence                                                          7889999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++...|++++.++++++.+.|.||+  ..|+||||+  +.||+|||+++.|.||++||+|.+.+|++.|||.+++.+..+
T Consensus        97 lt~edpvtveyitRyiA~~kQrYTq--s~grRPFGv--s~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEf  172 (249)
T KOG0183|consen   97 LTLEDPVTVEYITRYIAGLKQRYTQ--SNGRRPFGV--STLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREF  172 (249)
T ss_pred             cccCCCcHHHHHHHHHHHhhhhhhc--cCCcccccc--eEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHH
Confidence            9999999999999999999999999  899999996  569999999778999999999999999999999999999999


Q ss_pred             HHhhCCCC--CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhc
Q psy14210        242 LDTDYRPD--LSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       242 Le~~y~~~--ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~  304 (312)
                      ||++|.+.  .+..|+++|++++|.++...   .++++|+++++..+ ++.++.++|+.++..++.
T Consensus       173 lEK~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~  235 (249)
T KOG0183|consen  173 LEKNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQ  235 (249)
T ss_pred             HHHhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCceeecCHHHHHHHHHHHHH
Confidence            99999876  78999999999999998874   46899999999976 999999999999987753

>KOG0173|consensus

Probab=100.00  E-value=7.6e-35  Score=259.77  Aligned_cols=189  Identities=26%  Similarity=0.394  Sum_probs=180.0

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .|||||+|+.|+||||||+|+|+|.|..+..++.+|                                            
T Consensus        35 kTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~K--------------------------------------------   70 (271)
T KOG0173|consen   35 KTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEK--------------------------------------------   70 (271)
T ss_pred             ccCcEEEEEEeCCeEEEeecccccCCCeeecchhHH--------------------------------------------
Confidence            589999999999999999999999999999998888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   |+.|.++|+||.+|.++|...+.+.+..+++.|++
T Consensus        71 ---------------------------------------------IH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l  105 (271)
T KOG0173|consen   71 ---------------------------------------------IHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRL  105 (271)
T ss_pred             ---------------------------------------------HhhcccceEEccCCchhhHHHHHHHHHHHHHHHHh
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      +.++.+.|-.+.+++.+.+++|.-         .+.+.+|+||+|. .||+||++.|.|+...-+|.++|||+..+.++|
T Consensus       106 ~t~R~~rVv~A~~mlkQ~LFrYqG---------~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvl  175 (271)
T KOG0173|consen  106 NTGRKPRVVTALRMLKQHLFRYQG---------HIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVL  175 (271)
T ss_pred             ccCCCCceeeHHHHHHHHHHHhcC---------cccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHH
Confidence            999999999999999999999887         2568899999999 899999999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      |..|+|||++|||++|+.+|+...+..|..+|+++++++|++.+++.+
T Consensus       176 Esr~k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~l  223 (271)
T KOG0173|consen  176 ESRWKPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEYL  223 (271)
T ss_pred             HHhcCcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCCcccc
Confidence            999999999999999999999999999999999999999998776543

>KOG0863|consensus

Probab=100.00  E-value=5.1e-34  Score=251.60  Aligned_cols=217  Identities=19%  Similarity=0.232  Sum_probs=203.9

Q ss_pred             cccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhH
Q psy14210         66 SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAAD  145 (312)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD  145 (312)
                      -|++||..+.+|++                   --||++.++..|+.+.++-.+.++..|.|||+||+|++++++|+++|
T Consensus        20 ~QvEya~EavkqGs-------------------atVGLks~thaVLvAl~r~~seLss~QkKi~~iD~h~g~siAGLt~D   80 (264)
T KOG0863|consen   20 HQVEYAMEAVKQGS-------------------ATVGLKSRTHAVLVALKRAQSELSSHQKKIFKIDDHIGISIAGLTAD   80 (264)
T ss_pred             hHHHHHHHHHhccc-------------------ceEeecccceEEEeeeccchhHHHHhhheeEecccccceEEeccCcc
Confidence            39999999999999                   46899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEe
Q psy14210        146 CVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIE  225 (312)
Q Consensus       146 ~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e  225 (312)
                      ++.|.++++.+|..+++.+++++++..+...|.+.+|.+|+  +.++||||  ++++++|||+ .||+||.++|+|++++
T Consensus        81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq--~ygrRpYG--VGllv~gYDe-~G~hl~e~~Psg~v~e  155 (264)
T KOG0863|consen   81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQ--RYGRRPYG--VGLLVAGYDE-SGPHLYEFCPSGNVFE  155 (264)
T ss_pred             hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhh--hhCCcccc--ceEEEEeecC-CCceeEEEcCCccEEE
Confidence            99999999999999999999999999999999999999999  99999999  4899999998 7999999999999999


Q ss_pred             cCeeeEccChHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEEECC-CeEEeChhHHHHHHHH
Q psy14210        226 GTKFCVGSGAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRD-IHSGGCVRLYKINGQ-GWQQVLSRDVKDIYND  301 (312)
Q Consensus       226 ~~~~AiGsGs~~a~~~Le~~y~--~~ms~eEAi~la~kaL~~a~~rD-~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~  301 (312)
                      ++.++||+.++.++++||++..  ++++.||.++.++.||+.+...| ..++.+++|+|+.++ .|+.++.+++.+++..
T Consensus       156 ~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~  235 (264)
T KOG0863|consen  156 CKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDL  235 (264)
T ss_pred             EeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHH
Confidence            9999999999999999999887  59999999999999999999744 678899999999997 6999999999999887


Q ss_pred             HhcCC
Q psy14210        302 RKEAP  306 (312)
Q Consensus       302 ~~~~~  306 (312)
                      +++.+
T Consensus       236 ~~~~~  240 (264)
T KOG0863|consen  236 FKKVD  240 (264)
T ss_pred             hhcCC
Confidence            65433

>KOG0179|consensus

Probab=100.00  E-value=1.4e-32  Score=239.46  Aligned_cols=190  Identities=26%  Similarity=0.277  Sum_probs=179.7

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|+|++||+..|..|+|+|+|.+.|.-|.+|...|                                            
T Consensus        27 ~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~K--------------------------------------------   62 (235)
T KOG0179|consen   27 DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSK--------------------------------------------   62 (235)
T ss_pred             cCCceEEEEcCCceEEEecccccccceeeeccccch--------------------------------------------
Confidence            579999999999999999999999999999998888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+++|+++++.+|++||+..|.+.++.+++.|++
T Consensus        63 ---------------------------------------------i~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~   97 (235)
T KOG0179|consen   63 ---------------------------------------------IFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEH   97 (235)
T ss_pred             ---------------------------------------------heeccCceEEecccchhhHHHHHHHHHHHHHHHhh
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      .++..|++..+|+.|+.+||.+|.      .||.  +..|++|+|+++++.+|+.||.|++.+..+.|-|+++.+++|+|
T Consensus        98 ~h~k~ms~~s~A~lls~~LY~kRF------FPYY--v~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfL  169 (235)
T KOG0179|consen   98 DHNKKMSIHSAAQLLSTILYSKRF------FPYY--VFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFL  169 (235)
T ss_pred             cccccccHHHHHHHHHHHHhhccc------ccce--eeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhh
Confidence            999999999999999999999998      8876  56799999998899999999999999999999999999999999


Q ss_pred             HhhCC-----------CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210        243 DTDYR-----------PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ  289 (312)
Q Consensus       243 e~~y~-----------~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~  289 (312)
                      ++...           ..+|+|||++|++++|..|.+||+.+|+.++|+|++++|++.
T Consensus       170 DnQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~  227 (235)
T KOG0179|consen  170 DNQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEV  227 (235)
T ss_pred             hhhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEE
Confidence            98643           358999999999999999999999999999999999999764

>KOG0177|consensus

Probab=100.00  E-value=9.7e-33  Score=237.21  Aligned_cols=170  Identities=23%  Similarity=0.310  Sum_probs=160.2

Q ss_pred             CCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCC
Q psy14210        117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNG  196 (312)
Q Consensus       117 ~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~g  196 (312)
                      ++.+++++++|+++++++++|+++|..+|+..+.+++.+.++.|++++|.+++|+.+|+++++.+..+.+    +++||.
T Consensus        24 si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LR----sr~~yq   99 (200)
T KOG0177|consen   24 SILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLR----SRTPYQ   99 (200)
T ss_pred             ceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHh----cCCCce
Confidence            4455667777799999999999999999999999999999999999999999999999999999999888    579988


Q ss_pred             cccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc
Q psy14210        197 LSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC  276 (312)
Q Consensus       197 ls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~  276 (312)
                        +++|+||+|+..+|.||++|..|+..+.++.+.|.++.|+.++|+++|+|+||.|||+++..+|+.++.+|-...-.+
T Consensus       100 --V~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~  177 (200)
T KOG0177|consen  100 --VNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLVINLPG  177 (200)
T ss_pred             --EEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence              468999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCeEEeCh
Q psy14210        277 VRLYKINGQGWQQVLS  292 (312)
Q Consensus       277 ieI~iItk~G~~~l~~  292 (312)
                      +.+.+|+|||++.++.
T Consensus       178 f~v~IVdkdGir~~~~  193 (200)
T KOG0177|consen  178 FIVKIVDKDGIRKLDD  193 (200)
T ss_pred             cEEEEEcCCCceeccc
Confidence            9999999999998754

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=100.00  E-value=1.9e-32  Score=238.83  Aligned_cols=167  Identities=22%  Similarity=0.267  Sum_probs=145.0

Q ss_pred             CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCC
Q psy14210          5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPP   84 (312)
Q Consensus         5 g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
                      |||++|++++||||||+|+|+|.|.++.++..+|                                              
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~K----------------------------------------------   34 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARK----------------------------------------------   34 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCce----------------------------------------------
Confidence            7999999999999999999999999999999888                                              


Q ss_pred             CCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210         85 LSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECK  163 (312)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~  163 (312)
                                                                 |++| +++++|++||..+|+|.|.+.++.+++.|+..
T Consensus        35 -------------------------------------------I~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~   71 (172)
T PRK05456         35 -------------------------------------------VRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGN   71 (172)
T ss_pred             -------------------------------------------EEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCc
Confidence                                                       9999 99999999999999999999999999999832


Q ss_pred             cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHHHHH
Q psy14210        164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYAQAI  241 (312)
Q Consensus       164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~  241 (312)
                      .     ++.+++.+..+ ..+..     .+|+.  +++|+  +|.   |+||.+||.|++.+.  ++.++|+|+.+++++
T Consensus        72 ~-----~~~~a~l~~~l-~~~~~-----~~~l~--~~~lv--~d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~  133 (172)
T PRK05456         72 L-----LRAAVELAKDW-RTDRY-----LRRLE--AMLIV--ADK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAA  133 (172)
T ss_pred             c-----HHHHHHHHHHH-HhccC-----CCccE--EEEEE--EcC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHH
Confidence            2     46666555433 22221     24543  56777  344   799999999999877  799999999999999


Q ss_pred             HHhhCC-CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Q psy14210        242 LDTDYR-PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK  281 (312)
Q Consensus       242 Le~~y~-~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~i  281 (312)
                      ||++|+ ++|   ||++++++|++.+.+||..++++|+|-.
T Consensus       134 ld~~y~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        134 ARALLENTDL---SAEEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             HHHhhhcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence            999999 999   9999999999999999999999998754

>KOG0184|consensus

Probab=100.00  E-value=2e-32  Score=240.29  Aligned_cols=206  Identities=19%  Similarity=0.294  Sum_probs=185.3

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      -+++|++|||.+|||||++++-.++ .|..+++-+|                                            
T Consensus        32 en~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~r--------------------------------------------   66 (254)
T KOG0184|consen   32 ENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNER--------------------------------------------   66 (254)
T ss_pred             hcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCc--------------------------------------------
Confidence            4689999999999999999999888 6666665555                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||.|++||+|+++|+.+|.+.+.+++|.++..|+-
T Consensus        67 ---------------------------------------------i~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~  101 (254)
T KOG0184|consen   67 ---------------------------------------------IFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRK  101 (254)
T ss_pred             ---------------------------------------------eEeecccccEEEeccccchHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      +|+.|+|.+.++.+++++.|.+|.  ++..||||+  +.++++||. +||+||++||+|..+.++.+|+|.|.+.|+..|
T Consensus       102 ~y~~piP~~~la~rva~yvh~~Tl--y~~vRpfG~--~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtEl  176 (254)
T KOG0184|consen  102 NYGDPIPGKHLADRVADYVHAFTL--YSSVRPFGA--STILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTEL  176 (254)
T ss_pred             hcCCCCchHHHHHHHHhhhheeeh--hhccccccc--eEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHH
Confidence            999999999999999999999999  999999995  679999996 899999999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC--CCeEEeChhHHHHHHHHHh
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING--QGWQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk--~G~~~l~~~eI~~~l~~~~  303 (312)
                      |+.--.+|+.+|+++.+.+.|+.+.+..-...-.+||.++..  +|.+..-|.||-+...+++
T Consensus       177 EKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a  239 (254)
T KOG0184|consen  177 EKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPSELLEEAEKYA  239 (254)
T ss_pred             HhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcHHHHHHHHHHH
Confidence            999888999999999999999998765444445688888875  6887777778888777664

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=100.00  E-value=7.7e-32  Score=234.06  Aligned_cols=166  Identities=22%  Similarity=0.261  Sum_probs=143.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||++|++++||||||+|+|+|.|.++.++..+|                                               
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~K-----------------------------------------------   33 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARK-----------------------------------------------   33 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcce-----------------------------------------------
Confidence            799999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecC-eEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d-~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                |++|++ |++|++||..+|+|.|.++++.+++.|+++.
T Consensus        34 ------------------------------------------i~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~   71 (171)
T cd01913          34 ------------------------------------------VRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNL   71 (171)
T ss_pred             ------------------------------------------EEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchH
Confidence                                                      999999 9999999999999999999999999999887


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC--eeeEccChHHHHHHH
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT--KFCVGSGAEYAQAIL  242 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~--~~AiGsGs~~a~~~L  242 (312)
                      ++     .+++.+..+ ..++.      +|+ +++.+|+++|     ++||.+||.|++.+++  +.++|||+.+++++|
T Consensus        72 ~~-----~aa~l~~~l-~~~~~------~~~-l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~l  133 (171)
T cd01913          72 LR-----AAVELAKDW-RTDRY------LRR-LEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAA  133 (171)
T ss_pred             HH-----HHHHHHHHH-HhccC------cCc-eEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHH
Confidence            63     445544433 22222      555 4565666544     3899999999999995  999999999999999


Q ss_pred             HhhCCCC-CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Q psy14210        243 DTDYRPD-LSEEEAYALATSAIYHACRRDIHSGGCVRLYK  281 (312)
Q Consensus       243 e~~y~~~-ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~i  281 (312)
                      |.+|+++ ||   +.+++++|++.|++||..++++|.+-.
T Consensus       134 d~~yk~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~  170 (171)
T cd01913         134 RALLDHTDLS---AEEIARKALKIAADICIYTNHNITVEE  170 (171)
T ss_pred             HHhhccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence            9999995 99   559999999999999999999998754

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=100.00  E-value=1.5e-31  Score=232.19  Aligned_cols=166  Identities=24%  Similarity=0.300  Sum_probs=143.2

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||++|++|+||||||+|+|+|.|.++.++..+|                                               
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~K-----------------------------------------------   33 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARK-----------------------------------------------   33 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCe-----------------------------------------------
Confidence            799999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                |++| ++|++|++||..+|+|.|.++++.+++.|+++.
T Consensus        34 ------------------------------------------i~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~   71 (171)
T TIGR03692        34 ------------------------------------------VRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL   71 (171)
T ss_pred             ------------------------------------------EEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch
Confidence                                                      9999 599999999999999999999999999998743


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHHHHHH
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYAQAIL  242 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~~L  242 (312)
                           .+.+++.++++ ..++.      +|+ +++.+|+++|     ++||.+||.|++.++  ++.++|||+.+++++|
T Consensus        72 -----~~~~a~l~~~~-~~~~~------~~~-l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~l  133 (171)
T TIGR03692        72 -----TRAAVELAKDW-RTDRY------LRR-LEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAA  133 (171)
T ss_pred             -----HHHHHHHHHHH-hhccc------ccc-cEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHH
Confidence                 36666666653 22221      333 5565666543     489999999999997  5999999999999999


Q ss_pred             HhhC-CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Q psy14210        243 DTDY-RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK  281 (312)
Q Consensus       243 e~~y-~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~i  281 (312)
                      |.+| +++|+   |++++.++++.|++||..++++|+|-.
T Consensus       134 d~~y~~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       134 RALLRNTDLS---AEEIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             HHhhhcCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence            9999 47777   999999999999999999999998754

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0182|consensus

Probab=99.98  E-value=6.8e-31  Score=229.31  Aligned_cols=208  Identities=19%  Similarity=0.291  Sum_probs=193.3

Q ss_pred             cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210          4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP   83 (312)
Q Consensus         4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (312)
                      +|-|.||+|.+|.+++++.++..- +++.+..+..                                             
T Consensus        35 ~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~---------------------------------------------   68 (246)
T KOG0182|consen   35 AGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTH---------------------------------------------   68 (246)
T ss_pred             CCCceEEEcCCceEEEEecccCcc-ccccccccee---------------------------------------------
Confidence            588999999999999999888776 7777777766                                             


Q ss_pred             CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210         84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK  163 (312)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~  163 (312)
                                                                  +|+|+.+|+|+++|..+|++..+.++|.++.++++.
T Consensus        69 --------------------------------------------~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk  104 (246)
T KOG0182|consen   69 --------------------------------------------LFRITKKIGCVITGMIADARSQVQRARYEAAEFRYK  104 (246)
T ss_pred             --------------------------------------------EEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhh
Confidence                                                        899999999999999999999999999999999999


Q ss_pred             cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHH
Q psy14210        164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD  243 (312)
Q Consensus       164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le  243 (312)
                      ||.+||++.||++++++.|.++|  .+.+||.|+  .+++.|+|++.||.+|.+||.|-+..+++++.|.....+..+||
T Consensus       105 ~Gyemp~DiL~k~~Ad~~QvytQ--~a~mRplg~--~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLE  180 (246)
T KOG0182|consen  105 YGYEMPCDILAKRMADKSQVYTQ--NAAMRPLGV--AATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLE  180 (246)
T ss_pred             cCCCCCHHHHHHHHhhHHHHHhh--hhhhcccce--eEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHH
Confidence            99999999999999999999999  889999885  57899999988999999999999999999999999999999999


Q ss_pred             hhCCCC--CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHHhcCC
Q psy14210        244 TDYRPD--LSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       244 ~~y~~~--ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~~~~~  306 (312)
                      ++|+++  +|.+|++++++.||..++..|. ....+||++++++-  +++|+.+||++.|..++|++
T Consensus       181 Kk~Kk~~~~t~~e~ve~ai~al~~sl~~Df-k~se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAEkd  246 (246)
T KOG0182|consen  181 KKYKKDIDLTFEETVETAISALQSSLGIDF-KSSELEVGVVTVDNPEFRILSAEEIEEHLQAIAEKD  246 (246)
T ss_pred             HhhccCccchHHHHHHHHHHHHHHHHhccc-CCcceEEEEEEcCCcceeeccHHHHHHHHHHhhhcC
Confidence            999987  7899999999999999998885 45799999999864  99999999999999999874

>KOG0180|consensus

Probab=99.97  E-value=1.1e-29  Score=215.53  Aligned_cols=190  Identities=18%  Similarity=0.232  Sum_probs=178.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      -.+|+++|||+.+++|.||+|.|...-..-.+..++|                                           
T Consensus         5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~k-------------------------------------------   41 (204)
T KOG0180|consen    5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQK-------------------------------------------   41 (204)
T ss_pred             eecCceEEEEeCCceEEEEeccccceeeeeeeccchh-------------------------------------------
Confidence            3589999999999999999999998866667777777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|.|+++++.+|+..|+|.+.++++...+.|+
T Consensus        42 ----------------------------------------------i~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~   75 (204)
T KOG0180|consen   42 ----------------------------------------------IFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYE   75 (204)
T ss_pred             ----------------------------------------------heecCCeeEEeccccchhHHHHHHHHHHHHhHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec-CeeeEccChHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG-TKFCVGSGAEYAQA  240 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~-~~~AiGsGs~~a~~  240 (312)
                      ++.+++|.|+.+++.++.++|++|.      -||.  ...++||+|++++|+|...|..|..... +|.+.|.++...++
T Consensus        76 lre~R~i~P~~~s~mvS~~lYekRf------gpYf--~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~G  147 (204)
T KOG0180|consen   76 LREEREIKPETFSSMVSSLLYEKRF------GPYF--TEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYG  147 (204)
T ss_pred             hhhhcccCcHHHHHHHHHHHHHhhc------CCcc--cceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHH
Confidence            9999999999999999999999998      6875  5799999999889999999999999866 58999999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeE
Q psy14210        241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ  288 (312)
Q Consensus       241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~  288 (312)
                      ++|..|+|||..||..+.+.++|..+.+||+.+|+...+++|+||.++
T Consensus       148 mCE~ly~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~  195 (204)
T KOG0180|consen  148 MCEALYEPNMEPDELFETISQALLNAVDRDALSGWGAVVYIITKDKVT  195 (204)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEEEccchhh
Confidence            999999999999999999999999999999999999999999998764

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.95  E-value=6.4e-27  Score=197.32  Aligned_cols=162  Identities=28%  Similarity=0.422  Sum_probs=153.6

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||++|++++||||||+|++.+.|........+|                                               
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~k-----------------------------------------------   33 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIK-----------------------------------------------   33 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcce-----------------------------------------------
Confidence            689999999999999999999988876667777                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++++++++++++|..+|++.+.++++.+++.|++.++
T Consensus        34 ------------------------------------------i~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~   71 (164)
T cd01901          34 ------------------------------------------IGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYG   71 (164)
T ss_pred             ------------------------------------------EEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec-CeeeEccChHHHHHHHHh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG-TKFCVGSGAEYAQAILDT  244 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~-~~~AiGsGs~~a~~~Le~  244 (312)
                      .++++..+++.+++.++.+++     .||+++  ++|++|+|+ ++|+||.+||+|++.++ .++++|+++.+++++|++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~-----~~p~~~--~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~  143 (164)
T cd01901          72 EPISVVALAKELAKLLQVYTQ-----GRPFGV--NLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEK  143 (164)
T ss_pred             CCCCHHHHHHHHHHHHHHhcC-----CCCcce--EEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHH
Confidence            999999999999999999987     699884  689999998 88999999999999999 999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHH
Q psy14210        245 DYRPDLSEEEAYALATSAIY  264 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~  264 (312)
                      .|+++|+.+|+++++.+||+
T Consensus       144 ~~~~~~~~~~~~~~~~~~l~  163 (164)
T cd01901         144 LYKPDMTLEEAVELALKALK  163 (164)
T ss_pred             HhcCCCCHHHHHHHHHHHHh
Confidence            99999999999999999985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=6.8e-14  Score=118.44  Aligned_cols=172  Identities=20%  Similarity=0.253  Sum_probs=136.6

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .++||++++|-.+-|+||+|...|.|+.+...+++|+                                           
T Consensus         2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKv-------------------------------------------   38 (178)
T COG5405           2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKV-------------------------------------------   38 (178)
T ss_pred             ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHH-------------------------------------------
Confidence            4789999999999999999999999999999988883                                           


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                 .|||  +..++.+++|..+|+..|.+.+..+++.|.-
T Consensus        39 -------------------------------------------Rkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~g   73 (178)
T COG5405          39 -------------------------------------------RRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQG   73 (178)
T ss_pred             -------------------------------------------HHHc--CCcEEEEecccchhHHHHHHHHHHHHHHccC
Confidence                                                       2356  7789999999999999999999999988862


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYAQA  240 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a~~  240 (312)
                      .      +...+..++.-++.-+.     .|-  +.+.++++  |   .-.+|-+...|..++.  ..++||||..|+++
T Consensus        74 ~------L~raavelaKdwr~Dk~-----lr~--LEAmllVa--d---~~~il~isG~gdV~epe~~~~aIGSGgnyAl~  135 (178)
T COG5405          74 D------LFRAAVELAKDWRTDKY-----LRK--LEAMLLVA--D---KTHILIITGNGDVIEPEDDIIAIGSGGNYALS  135 (178)
T ss_pred             c------HHHHHHHHHHhhhhhhH-----HHH--HhhheeEe--C---CCcEEEEecCcceecCCCCeEEEcCCchHHHH
Confidence            2      22244444444432221     111  33556666  4   3679999999999977  37999999999999


Q ss_pred             HHHhhCCC-CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE
Q psy14210        241 ILDTDYRP-DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN  283 (312)
Q Consensus       241 ~Le~~y~~-~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt  283 (312)
                      ..+..++. ++|   |.+++.++|..+.+-+.++..+|.|..++
T Consensus       136 AarAl~~~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         136 AARALMENTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             HHHHHHhccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence            99988874 777   77899999999999888999999887765

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.6e-11  Score=107.58  Aligned_cols=153  Identities=20%  Similarity=0.225  Sum_probs=119.8

Q ss_pred             eEEEEEeCChhHHHHHHHHHHHHhhhhhh-hcCCccCHHHHHHHHHHHHHHhccCCCCC--CCCCCcccceeeeEEecCC
Q psy14210        134 SILCTLAGNAADCVYWLHSLAKECKGYEC-KYRTGMTIRHAANLLVNMVRKYRTGNHSS--KIPNGLSFGTLMAAYDEIL  210 (312)
Q Consensus       134 ~i~~a~sG~~aD~q~l~~~lr~~~~~~~~-~~g~~i~v~~la~~ls~~l~~~~~~~~~~--~rP~gls~~~IIaG~D~~~  210 (312)
                      -++++.+|..|-.|.+...+.+..+..+. ..-+-.++-..+.++....++-...+...  ..--.+++++|+||.-.-.
T Consensus        44 vlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~  123 (255)
T COG3484          44 VLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGE  123 (255)
T ss_pred             EEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCC
Confidence            36789999999999999999887763322 11234566777777777666544321110  1112245789999998734


Q ss_pred             CCeEEEEcCCceEEec----CeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC
Q psy14210        211 GPQLYMLDNTGLLIEG----TKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG  286 (312)
Q Consensus       211 gp~Ly~iDpsGs~~e~----~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G  286 (312)
                      .|.||.+.|.|++++.    +|..+|. +.+.+++|++.+..++++|||.++++-+|...++.+...|-++++.++.+|.
T Consensus       124 pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds  202 (255)
T COG3484         124 PPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS  202 (255)
T ss_pred             CceeEEEccCCCeeecCCCCceeEccc-cccCchhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence            5899999999999976    6899998 6789999999999999999999999999999999999999999999999986


Q ss_pred             e
Q psy14210        287 W  287 (312)
Q Consensus       287 ~  287 (312)
                      +
T Consensus       203 ~  203 (255)
T COG3484         203 F  203 (255)
T ss_pred             e
Confidence            4

>PTZ00246 proteasome subunit alpha; Provisional

Probab=90.22  E-value=0.085  Score=48.69  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=31.2

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |.+||+.+..++.                   +++|++++||||+++|++.+..
T Consensus        20 QvEYA~~av~~g~-------------------t~Igik~~dgVvlaad~r~s~~   54 (253)
T PTZ00246         20 QVEYALEAINNAS-------------------LTVGILCKEGVILGADKPISSK   54 (253)
T ss_pred             HHHHHHHHHHhCC-------------------CEEEEEECCEEEEEEecCCCCc
Confidence            9999999998877                   7899999999999999876553

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=90.21  E-value=0.093  Score=47.07  Aligned_cols=80  Identities=9%  Similarity=-0.062  Sum_probs=51.1

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHH
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADC  146 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~  146 (312)
                      |.+||..+.+++.                   +++|++++|||++++|++........++..-+|..    - .      
T Consensus        18 Qveya~~a~~~G~-------------------t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~----I-~------   67 (213)
T cd03752          18 QVEYAMEAISHAG-------------------TCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYK----I-D------   67 (213)
T ss_pred             HHHhHHHHHhcCC-------------------CEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEE----e-c------
Confidence            9999999998887                   89999999999999998765542222222222211    0 0      


Q ss_pred             HHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhcc
Q psy14210        147 VYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT  186 (312)
Q Consensus       147 q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~  186 (312)
                                -..+--.-|.......+.++++...+.++.
T Consensus        68 ----------~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~   97 (213)
T cd03752          68 ----------DHIACAVAGITSDANILINYARLIAQRYLY   97 (213)
T ss_pred             ----------CCEEEEEecChHhHHHHHHHHHHHHHHHHH
Confidence                      001111235556677777888777776664

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=88.45  E-value=0.14  Score=46.36  Aligned_cols=34  Identities=9%  Similarity=-0.042  Sum_probs=30.4

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |++||+.+..++.                   +++|++++||||+++|++.+.
T Consensus        16 QveyA~~av~~G~-------------------t~igik~~dgVvlaad~~~~~   49 (227)
T cd03750          16 QIEYALAAVSSGA-------------------PSVGIKAANGVVLATEKKVPS   49 (227)
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEeecCCc
Confidence            9999999988877                   799999999999999987654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=86.79  E-value=0.19  Score=45.00  Aligned_cols=34  Identities=6%  Similarity=-0.028  Sum_probs=29.6

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||..+..++.                   +++|++++||||++++++.+.
T Consensus        16 Qveya~~av~~G~-------------------t~IgIk~~dgVvlaad~r~~~   49 (211)
T cd03749          16 QVEYAMEAVKQGS-------------------ATVGLKSKTHAVLVALKRATS   49 (211)
T ss_pred             HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEeccCcc
Confidence            8999998887766                   789999999999999987554

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=85.67  E-value=0.26  Score=44.16  Aligned_cols=34  Identities=6%  Similarity=-0.061  Sum_probs=30.1

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||..+..|+.                   +++|++++|||++++|++.+.
T Consensus        16 Q~eya~~a~~~G~-------------------t~igik~~dgVvlaad~r~~~   49 (213)
T cd03753          16 QVEYAIEAIKLGS-------------------TAIGIKTKEGVVLAVEKRITS   49 (213)
T ss_pred             HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEecccCC
Confidence            8999998888877                   899999999999999987654

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.56  E-value=3  Score=37.11  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC
Q psy14210        236 EYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING  284 (312)
Q Consensus       236 ~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk  284 (312)
                      +.+...|.++|++.|+++++.++..++|..+.......+..+++...++
T Consensus       131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~  179 (194)
T PF09894_consen  131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTK  179 (194)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEecc
Confidence            5566788889999999999999999999999877777778888887765

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=84.63  E-value=0.31  Score=43.47  Aligned_cols=34  Identities=9%  Similarity=-0.106  Sum_probs=29.9

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||..+..++.                   +++|++++|||++++|++...
T Consensus        16 Qveya~~av~~G~-------------------t~Igik~~dgVvlaad~~~~~   49 (207)
T cd03755          16 QVEYAQEAVRKGT-------------------TAVGVRGKDCVVLGVEKKSVA   49 (207)
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEecCCCC
Confidence            8999999988877                   899999999999999986543

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PRK03996 proteasome subunit alpha; Provisional

Probab=84.30  E-value=0.32  Score=44.47  Aligned_cols=34  Identities=6%  Similarity=-0.075  Sum_probs=30.3

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||..+..++.                   +++|++++||||+|+|++.+.
T Consensus        25 Q~eya~~av~~G~-------------------t~igik~~dgVvlaad~r~~~   58 (241)
T PRK03996         25 QVEYAREAVKRGT-------------------TAVGVKTKDGVVLAVDKRITS   58 (241)
T ss_pred             HHHHHHHHHHhCC-------------------CEEEEEeCCEEEEEEeccCCC
Confidence            9999999888877                   789999999999999987654

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=83.73  E-value=0.32  Score=43.71  Aligned_cols=34  Identities=6%  Similarity=-0.097  Sum_probs=29.8

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||+.+..++.                   +++|++++|||++|+|.+.+.
T Consensus        19 Qveya~~a~~~G~-------------------tvIgik~kdgVvla~d~r~~~   52 (212)
T cd03751          19 QVEYANKAVENSG-------------------TAIGIRCKDGVVLAVEKLVTS   52 (212)
T ss_pred             HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEEccccc
Confidence            9999999988777                   789999999999999987644

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=82.81  E-value=0.4  Score=43.27  Aligned_cols=34  Identities=6%  Similarity=-0.082  Sum_probs=29.7

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||+.+..++.                   +++|++++||||+++|++.+.
T Consensus        18 Qieya~~av~~G~-------------------tvigi~~~dgvvlaad~r~~~   51 (224)
T TIGR03633        18 QVEYAREAVKRGT-------------------TAVGIKTKDGVVLAVDKRITS   51 (224)
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEECCEEEEEEeccCCc
Confidence            8999998887776                   799999999999999987653

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
3unb_K	205	Mouse Constitutive 20s Proteasome In Complex With P		3e-33
1iru_L	204	Crystal Structure Of The Mammalian 20s Proteasome A		3e-32
3unf_K	204	Mouse 20s Immunoproteasome In Complex With Pr-957 L		3e-30
3nzj_K	287	Crystal Structure Of Yeast 20s Proteasome In Comple		2e-28
4b4t_5	287	Near-Atomic Resolution Structural Model Of The Yeas		2e-28
1g0u_K	212	A Gated Channel Into The Proteasome Core Particle L		3e-28
1ryp_L	212	Crystal Structure Of The 20s Proteasome From Yeast		3e-28
3unb_N	205	Mouse Constitutive 20s Proteasome In Complex With P		4e-11
1iru_H	205	Crystal Structure Of The Mammalian 20s Proteasome A		7e-11
3h4p_a	219	Proteasome 20s Core Particle From Methanocaldococcu		4e-10
1j2q_H	202	20s Proteasome In Complex With Calpain-inhibitor I		4e-09
3unf_N	199	Mouse 20s Immunoproteasome In Complex With Pr-957 L		9e-09
1ya7_H	217	Implications For Interactions Of Proteasome With Pa		2e-07
1pma_B	211	Proteasome From Thermoplasma Acidophilum Length = 2		2e-07
3c91_H	203	Thermoplasma Acidophilum 20s Proteasome With An Ope		2e-07
1iru_I	234	Crystal Structure Of The Mammalian 20s Proteasome A		1e-05
1g0u_B	245	A Gated Channel Into The Proteasome Core Particle L		2e-05
1ryp_C	244	Crystal Structure Of The 20s Proteasome From Yeast		2e-05
3oeu_B	235	Structure Of Yeast 20s Open-Gate Proteasome With Co		3e-05
1z7q_C	258	Crystal Structure Of The 20s Proteasome From Yeast		3e-05
1vsy_C	232	Proteasome Activator Complex Length = 232		3e-05
3unb_D	241	Mouse Constitutive 20s Proteasome In Complex With P		3e-05
1iru_E	241	Crystal Structure Of The Mammalian 20s Proteasome A		3e-05
3unb_H	234	Mouse Constitutive 20s Proteasome In Complex With P		4e-05
1iru_K	201	Crystal Structure Of The Mammalian 20s Proteasome A		4e-05
3unb_J	201	Mouse Constitutive 20s Proteasome In Complex With P		5e-05
1q5r_H	294	The Rhodococcus 20s Proteasome With Unprocessed Pro		8e-05
3h4p_A	264	Proteasome 20s Core Particle From Methanocaldococcu		1e-04
1j2q_A	237	20s Proteasome In Complex With Calpain-inhibitor I		1e-04
1q5q_H	235	The Rhodococcus 20s Proteasome Length = 235		1e-04
3nzj_N	215	Crystal Structure Of Yeast 20s Proteasome In Comple		2e-04
1g65_N	196	Crystal Structure Of Epoxomicin:20s Proteasome Reve		2e-04
1ryp_H	205	Crystal Structure Of The 20s Proteasome From Yeast		2e-04
1vsy_H	196	Proteasome Activator Complex Length = 196		2e-04
2h6j_H	294	Crystal Structure Of The Beta F145a Rhodococcus Pro		3e-04
1j2p_A	246	Alpha-Ring From The Proteasome From Archaeoglobus F		4e-04

>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/205 (39%), Positives = 116/205 (56%), Gaps = 17/205 (8%)
Query: 99  ELLHPVYTGGER---CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAK 155
           + LH V    +     G +  S TV      +VI ++  +L T+AG AADC +W   LA+
Sbjct: 7   KFLHGVIVAADSRATAGAYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 156 ECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLY 215
           +C+ YE + +  +++  A+ LL NMV +Y+          GLS GT++  +D+  GP LY
Sbjct: 62  QCRIYELRNKERISVAAASKLLANMVYQYK--------GMGLSMGTMICGWDK-RGPGLY 112
Query: 216 MLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGG 275
            +D+ G  I GT F VGSG+ YA  ++D  Y  DL  EEAY LA  AIY A  RD +SGG
Sbjct: 113 YVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGG 172
Query: 276 CVRLYKINGQGWQQVLSRDVKDIYN 300
            V LY +   GW +V S +V D+++
Sbjct: 173 AVNLYHVREDGWIRVSSDNVADLHD 197

>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 204

Iteration: 1
 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 14/197 (7%)
Query: 111 CGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI 170
            G +  S TV      +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++
Sbjct: 22  AGAYIASQTVK-----KVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISV 76
Query: 171 RHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFC 230
             A+ LL NMV +Y+          GLS GT++  +D+  GP LY +D+ G  I G  F 
Sbjct: 77  AAASKLLANMVYQYK--------GMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFS 127
Query: 231 VGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
           VGSG+ YA  ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V
Sbjct: 128 VGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 187
Query: 291 LSRDVKDIYNDRKEAPP 307
            S +V D++     + P
Sbjct: 188 SSDNVADLHEKYSGSTP 204

>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 204

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/180 (40%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           +VI ++  +L T++G AADC YW   LAKEC+ Y  +    +++  A+ LL NM+ +YR 
Sbjct: 33  KVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYR- 91
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
                    GLS G+++  +D+  GP LY +D+ G  + G  F  GSG  YA  ++D+ Y
Sbjct: 92  -------GMGLSMGSMICGWDKK-GPGLYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGY 143
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP 306
           R DLS EEAY L   AI +A  RD +SGG V +Y +   GW +V S DV D+     EA 
Sbjct: 144 RQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHMKEDGWVKVESSDVSDLLYKYGEAA 203

>pdb|3NZJ|K Chain K, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 287

Iteration: 1
 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           V   T  +VI ++  +L T+AG AADC +W   L  +C+ +E + +  +++  A+ +L N
Sbjct: 101 VASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSN 160
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           +V +Y+          GLS GT++  Y    GP +Y +D+ G  ++G  FCVGSG  +A 
Sbjct: 161 LVYQYKGA--------GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAY 212
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            +LD++Y+ DLS E+A  L   +I  A  RD +SGG V LY +   GW    + DV +++
Sbjct: 213 GVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF 272
Query: 300 NDRKE 304
              KE
Sbjct: 273 WKVKE 277

>pdb|4B4T|5 Chain 5, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 287

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           V   T  +VI ++  +L T+AG AADC +W   L  +C+ +E + +  +++  A+ +L N
Sbjct: 101 VASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSN 160
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           +V +Y+          GLS GT++  Y    GP +Y +D+ G  ++G  FCVGSG  +A 
Sbjct: 161 LVYQYKGA--------GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAY 212
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            +LD++Y+ DLS E+A  L   +I  A  RD +SGG V LY +   GW    + DV +++
Sbjct: 213 GVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF 272
Query: 300 NDRKE 304
              KE
Sbjct: 273 WKVKE 277

>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle Length = 212

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           V   T  +VI ++  +L T+AG AADC +W   L  +C+ +E + +  +++  A+ +L N
Sbjct: 26  VASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSN 85
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           +V +Y+          GLS GT++  Y    GP +Y +D+ G  ++G  FCVGSG  +A 
Sbjct: 86  LVYQYKGA--------GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAY 137
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            +LD++Y+ DLS E+A  L   +I  A  RD +SGG V LY +   GW    + DV +++
Sbjct: 138 GVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF 197
Query: 300 NDRKE 304
              KE
Sbjct: 198 WKVKE 202

>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 212

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 104/185 (56%), Gaps = 8/185 (4%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           V   T  +VI ++  +L T+AG AADC +W   L  +C+ +E + +  +++  A+ +L N
Sbjct: 26  VASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSN 85
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           +V +Y+          GLS GT++  Y    GP +Y +D+ G  ++G  FCVGSG  +A 
Sbjct: 86  LVYQYKGA--------GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAY 137
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIY 299
            +LD++Y+ DLS E+A  L   +I  A  RD +SGG V LY +   GW    + DV +++
Sbjct: 138 GVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELF 197
Query: 300 NDRKE 304
              KE
Sbjct: 198 WKVKE 202

>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 13/207 (6%)
Query: 105 YTGGERCGPFSQSST---VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161
           + GG   G  S+++T   + +  + ++ P+   I C  +G+AAD      ++  +   + 
Sbjct: 8   FNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQLGFHS 67
Query: 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTG 221
            +      +  AA+L   M  +YR           L  G ++A +D   G Q+Y +   G
Sbjct: 68  IELNEPPLVHTAASLFKEMCYRYR---------EDLMAGIIIAGWDPQEGGQVYSVPMGG 118
Query: 222 LLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK 281
           +++  +    GSG+ Y    +D  YR  ++++E      +A+  A  RD  SGG +RL  
Sbjct: 119 MMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 282 INGQGWQ-QVLSRDVKDIYNDRKEAPP 307
           I   G + QVL  D    +      PP
Sbjct: 179 IQESGVERQVLLGDQIPKFTIATLPPP 205

>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 105 YTGGERCGPFSQSST---VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161
           + GG   G  S+++T   + +  + ++ P+   I C  +G+AAD      ++  +   + 
Sbjct: 8   FDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHS 67
Query: 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTG 221
            +      +  AA+L   M  +YR           L  G ++A +D   G Q+Y +   G
Sbjct: 68  IELNEPPLVHTAASLFKEMCYRYR---------EDLMAGIIIAGWDPQEGGQVYSVPMGG 118
Query: 222 LLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK 281
           +++  +    GSG+ Y    +D  YR  +++EE      +A+  A  RD  SGG +RL  
Sbjct: 119 MMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178
Query: 282 INGQGWQ-QVLSRD 294
           I   G + QVL  D
Sbjct: 179 IAESGVERQVLLGD 192

>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTI--RH 172
           S  + V    + ++  +   I  T+AG+  D    +  L  E K Y  K RTG  I    
Sbjct: 22  SLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLY--KMRTGRNIPPLA 79
Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CV 231
            A LL N++       HSS++   L+   ++  YD + G +L+ LD  G + E   F   
Sbjct: 80  CATLLSNIL-------HSSRMFPFLT-QIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTAT 131
Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
           GSG+  A  +L+  Y  D+S EE   LA +A+  A  RD  SG  + L  I   G +   
Sbjct: 132 GSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFE 191
Query: 292 SRDVKDIYN 300
             +++ I +
Sbjct: 192 DEEIEKILD 200

>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 10/180 (5%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           +    + ++  ++  +  T AG+  D  +    +  E   YE +     T+R  A L  N
Sbjct: 26  IASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSN 85
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCV-GSGAEYA 238
           ++  YR   +  ++        L+   D   G  +Y +D  G  IE       GSG+  A
Sbjct: 86  LLNSYRYFPYLVQL--------LIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTA 136
Query: 239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDI 298
             +L+  + P++  +EA  LA  AIY A +RD  SG  + + KI    + Q    +V+ I
Sbjct: 137 YGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQI 196

>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 199

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 15/202 (7%)
Query: 105 YTGGERCGPFSQSS--TVPHNTSF-QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE 161
           + GG   G  S+ S  T   N  F ++ P+   I C L+G+AAD        A + + + 
Sbjct: 8   FDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHG 67
Query: 162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTG 221
            +      +  AAN++ N+  KYR           L    ++A +D+  G Q+Y     G
Sbjct: 68  LELEEPPLVLAAANVVKNISYKYR---------EDLLAHLIVAGWDQREGGQVYGTMG-G 117
Query: 222 LLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK 281
           +LI       GSG+ Y    +D  Y+P ++ EE     T+AI  A  RD  SGG + L  
Sbjct: 118 MLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVT 177
Query: 282 INGQGWQQ--VLSRDVKDIYND 301
           I   G     +L  ++   Y++
Sbjct: 178 ITAAGVDHRVILGDELPKFYDE 199

>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And Pa700 From The 1.9 A Structure Of A Proteasome-11s Activator Complex Length = 217

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           + H    ++  + +    T+AG   D    +  +  E + Y  + R  M I   A LL N
Sbjct: 34  IMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSN 93
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           M+      N    +P  +    L+   D    P ++ +D  G  +E      GSG+ +  
Sbjct: 94  ML------NQVKYMPYMVQL--LVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVY 143
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQV 290
            +L++ Y   ++ +E   L   AI  A +RD  SGG + +  I  + G+ Q+
Sbjct: 144 GVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQL 195

>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum Length = 211

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           + H    ++  + +    T+AG   D    +  +  E + Y  + R  M I   A LL N
Sbjct: 34  IMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSN 93
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           M+      N    +P  +    L+   D    P ++ +D  G  +E      GSG+ +  
Sbjct: 94  ML------NQVKYMPYMVQL--LVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVY 143
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQV 290
            +L++ Y   ++ +E   L   AI  A +RD  SGG + +  I  + G+ Q+
Sbjct: 144 GVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQL 195

>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate Length = 203

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 11/172 (6%)
Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
           + H    ++  + +    T+AG   D    +  +  E + Y  + R  M I   A LL N
Sbjct: 26  IMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSN 85
Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           M+      N    +P  +    L+   D    P ++ +D  G  +E      GSG+ +  
Sbjct: 86  ML------NQVKYMPYMVQL--LVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVY 135
Query: 240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQV 290
            +L++ Y   ++ +E   L   AI  A +RD  SGG + +  I  + G+ Q+
Sbjct: 136 GVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQL 187

>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 234

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 131 VSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHS 190
           +S +I C  AG AAD       ++   + +         +  A  +L  M+ +YR     
Sbjct: 37  ISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYR----- 91
Query: 191 SKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDL 250
                G     L+    ++ GP LY +   G   +     +GSG+  A A+ +  +RPD+
Sbjct: 92  -----GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 146
Query: 251 SEEEAYALATSAIYHACRRDIHSGGCVRL 279
            EEEA  L + AI      D+ SG  + L
Sbjct: 147 EEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175

>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle Length = 245

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 117 SSTVPHNTSFQVI-PVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
           S+ +  +TS + +  ++  I   +AG  AD    +++     + Y   Y   + +     
Sbjct: 54  STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVR 113
Query: 176 LLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGA 235
            L ++ + Y    H    P G+SF  + A YD+  G QLY  + +G         VG+  
Sbjct: 114 RLSDIKQGYT--QHGGLRPFGVSF--IYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANT 169
Query: 236 EYAQAILDTDYRPDLSEEEAYALATSAIYH-----ACRRDIHSGGCVRLYKINGQGWQQV 290
             AQ +L  DY+ D+  ++A  LA   +       A   D      +R    +G+ +Q++
Sbjct: 170 SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 229
Query: 291 LS-RDVKDI 298
              +++KDI
Sbjct: 230 FKPQEIKDI 238

>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 244

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 117 SSTVPHNTSFQVI-PVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
           S+ +  +TS + +  ++  I   +AG  AD    +++     + Y   Y   + +     
Sbjct: 53  STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVR 112
Query: 176 LLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGA 235
            L ++ + Y    H    P G+SF  + A YD+  G QLY  + +G         VG+  
Sbjct: 113 RLSDIKQGYT--QHGGLRPFGVSF--IYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANT 168
Query: 236 EYAQAILDTDYRPDLSEEEAYALATSAIYH-----ACRRDIHSGGCVRLYKINGQGWQQV 290
             AQ +L  DY+ D+  ++A  LA   +       A   D      +R    +G+ +Q++
Sbjct: 169 SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 228
Query: 291 LS-RDVKDI 298
              +++KDI
Sbjct: 229 FKPQEIKDI 237

>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound 24 Length = 235

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 117 SSTVPHNTSFQVI-PVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
           S+ +  +TS + +  ++  I   +AG  AD    +++     + Y   Y   + +     
Sbjct: 44  STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVR 103
Query: 176 LLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGA 235
            L ++ + Y    H    P G+SF  + A YD+  G QLY  + +G         VG+  
Sbjct: 104 RLSDIKQGYT--QHGGLRPFGVSF--IYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANT 159
Query: 236 EYAQAILDTDYRPDLSEEEAYALATSAIYH-----ACRRDIHSGGCVRLYKINGQGWQQV 290
             AQ +L  DY+ D+  ++A  LA   +       A   D      +R    +G+ +Q++
Sbjct: 160 SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 219
Query: 291 LS-RDVKDI 298
              +++KDI
Sbjct: 220 FKPQEIKDI 228

>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In Complex With The Proteasome Activator Pa26 From Trypanosome Brucei At 3.2 Angstroms Resolution Length = 258

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 117 SSTVPHNTSFQVI-PVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
           S+ +  +TS + +  ++  I   +AG  AD    +++     + Y   Y   + +     
Sbjct: 54  STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVR 113
Query: 176 LLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGA 235
            L ++ + Y    H    P G+SF  + A YD+  G QLY  + +G         VG+  
Sbjct: 114 RLSDIKQGYT--QHGGLRPFGVSF--IYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANT 169
Query: 236 EYAQAILDTDYRPDLSEEEAYALATSAIYH-----ACRRDIHSGGCVRLYKINGQGWQQV 290
             AQ +L  DY+ D+  ++A  LA   +       A   D      +R    +G+ +Q++
Sbjct: 170 SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 229
Query: 291 LS-RDVKDI 298
              +++KDI
Sbjct: 230 FKPQEIKDI 238

>pdb|1VSY|C Chain C, Proteasome Activator Complex Length = 232

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 117 SSTVPHNTSFQVI-PVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
           S+ +  +TS + +  ++  I   +AG  AD    +++     + Y   Y   + +     
Sbjct: 41  STLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVR 100
Query: 176 LLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGA 235
            L ++ + Y    H    P G+SF  + A YD+  G QLY  + +G         VG+  
Sbjct: 101 RLSDIKQGYT--QHGGLRPFGVSF--IYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANT 156
Query: 236 EYAQAILDTDYRPDLSEEEAYALATSAIYH-----ACRRDIHSGGCVRLYKINGQGWQQV 290
             AQ +L  DY+ D+  ++A  LA   +       A   D      +R    +G+ +Q++
Sbjct: 157 SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKI 216
Query: 291 LS-RDVKDI 298
              +++KDI
Sbjct: 217 FKPQEIKDI 225

>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 8/179 (4%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           +++ + + I C ++G  AD    +     E + +   Y   MT+      + N+  ++  
Sbjct: 66  KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQF-- 123
Query: 187 GNHSSKIPNGLS--FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
           G   +  P  +S  FG   L    DE  GPQL+ +D +G  ++     +GS +E AQ+ L
Sbjct: 124 GEEDAD-PGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSL 181
Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYND 301
              Y   ++ +EA   +   +       +++          GQ +      +++++  D
Sbjct: 182 QEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD 240

>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 241

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 8/179 (4%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           +++ + + I C ++G  AD    +     E + +   Y   MT+      + N+  ++  
Sbjct: 66  KIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQF-- 123
Query: 187 GNHSSKIPNGLS--FGT--LMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
           G   +  P  +S  FG   L    DE  GPQL+ +D +G  ++     +GS +E AQ+ L
Sbjct: 124 GEEDAD-PGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSL 181
Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYND 301
              Y   ++ +EA   +   +       +++          GQ +      +++++  D
Sbjct: 182 QELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD 240

>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 234

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 131 VSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHS 190
           +S +I C  AG AAD       ++   + +         +  A  +L  M+ +Y+    +
Sbjct: 37  ISPNIYCCGAGTAADTDMTTQLISSNLELHSLTTGRLPRVVTANRMLKQMLFRYQGYIGA 96
Query: 191 SKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDL 250
           + +  G+          ++ GP LY +   G   +     +GSG+  A A+ +  +RPD+
Sbjct: 97  ALVLGGV----------DVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDM 146
Query: 251 SEEEAYALATSAIYHACRRDIHSGGCVRL 279
            EEEA  L + AI      D+ SG  + L
Sbjct: 147 EEEEAKKLVSEAIAAGIFNDLGSGSNIDL 175

>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 201

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 8/160 (5%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           ++  +S  IL    G A D V +   + K  + Y  K R G  +   A    N  R+   
Sbjct: 34  KMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLY--KMRNGYELSPTAA--ANFTRRNLA 89
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
               S+ P  ++   L+A YDE  GP LY +D    L +      G GA    +ILD  Y
Sbjct: 90  DCLRSRTPYHVNL--LLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY 147
Query: 247 RPDLSEEEAYALATSAIYHACRRDIHS--GGCVRLYKING 284
            P +S E A  L    +    +R I +     VR+   NG
Sbjct: 148 TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNG 187

>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 201

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 127 QVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRT 186
           ++  +S  IL    G A D V +   + K  + Y  K R G  +   A    N  R+   
Sbjct: 34  KMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLY--KMRNGYELSPTAA--ANFTRRNLA 89
Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
               S+ P  ++   L+A YDE  GP LY +D    L +      G GA    +ILD  Y
Sbjct: 90  DCLRSRTPYHVNL--LLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY 147
Query: 247 RPDLSEEEAYALATSAIYHACRRDI 271
            P +S E A  L    +    +R I
Sbjct: 148 TPTISRERAVELLRKCLEELQKRFI 172

>pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides Length = 294

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 139 LAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLS 198
           +AG A   +  +   A E + YE      +T    AN L +MVR    GN  + +  GL+
Sbjct: 110 IAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVR----GNLGAAM-QGLA 164
Query: 199 FGTLMAAYD-----EILGPQLYMLDNTGLLIEGTK--FCVGSGAEYAQAILDTDYRPDLS 251
              L+  YD     E    ++   D  G   E       VGSG+ +A++ L   Y PD  
Sbjct: 165 VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 224
Query: 252 EEEAYALATSAIYHACRRDIHSGG 275
           EE A   A  ++Y A   D  +GG
Sbjct: 225 EETALRAAIESLYDAADDDSATGG 248

>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 264

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
           S  V   +  ++  +   +    +G  AD    +     E + Y   Y   ++I   A  
Sbjct: 60  SKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKK 119
Query: 177 LVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236
           + ++ + Y    H    P G+S   L+A  D+    +L+  D +G LIE     +GSG  
Sbjct: 120 ICDIKQAY--TQHGGVRPFGVSL--LIAGIDK-NEARLFETDPSGALIEYKATAIGSGRP 174
Query: 237 YAQAILDTDYRPDLSEEEAYALATSAIYHA 266
               +L+ +YR D++ +E   LA +A+  A
Sbjct: 175 VVMELLEKEYRDDITLDEGLELAITALTKA 204

>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 237

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
           S  +  +T  ++  +   I    +G  AD    +     E +     Y   +T++  A  
Sbjct: 47  SKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKK 106
Query: 177 LVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236
           + +  ++Y    +    P G+S   L+A  DE+  P+LY  D +G L+E     +G G  
Sbjct: 107 ICDFKQQY--TQYGGVRPFGVSL--LIAGVDEV--PKLYETDPSGALLEYKATAIGMGRN 160
Query: 237 YAQAILDTDYRPDLSEEEAYALATSAI 263
                 + +YR DLS ++A  L   A+
Sbjct: 161 AVTEFFEKEYRDDLSFDDAMVLGLVAM 187

>pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome Length = 235

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 12/144 (8%)
Query: 139 LAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLS 198
           +AG A   +  +   A E + YE      +T    AN L +MVR    GN  + +  GL+
Sbjct: 45  IAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVR----GNLGAAM-QGLA 99
Query: 199 FGTLMAAYD-----EILGPQLYMLDNTGLLIEGTK--FCVGSGAEYAQAILDTDYRPDLS 251
              L+  YD     E    ++   D  G   E       VGSG+ +A++ L   Y PD  
Sbjct: 100 VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159
Query: 252 EEEAYALATSAIYHACRRDIHSGG 275
           EE A   A  ++Y A   D  +GG
Sbjct: 160 EETALRAAIESLYDAADDDSATGG 183

>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 215

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 87/195 (44%), Gaps = 13/195 (6%)
Query: 100 LLHPVYTGGERCGPFSQSST---VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKE 156
           ++   +  G   G  S+++T   + +  + ++  V   I C  +G+AAD       +   
Sbjct: 22  IMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYH 81
Query: 157 CKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYM 216
            + Y  +Y T  T   AA++   +  + +         + L+ G ++A YD+    ++Y 
Sbjct: 82  LELYTSQYGTPST-ETAASVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYT 131
Query: 217 LDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC 276
           +   G + +      GSG+ +     D ++R ++S+EE       ++  A + D  SGG 
Sbjct: 132 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 191
Query: 277 VRLYKINGQGWQQVL 291
           +R+  +   G ++++
Sbjct: 192 IRMVVLTAAGVERLI 206

>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors Length = 196

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 87/195 (44%), Gaps = 13/195 (6%)
Query: 100 LLHPVYTGGERCGPFSQSST---VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKE 156
           ++   +  G   G  S+++T   + +  + ++  V   I C  +G+AAD       +   
Sbjct: 3   IMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYH 62
Query: 157 CKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYM 216
            + Y  +Y T  T   AA++   +  + +         + L+ G ++A YD+    ++Y 
Sbjct: 63  LELYTSQYGTPST-ETAASVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYT 112
Query: 217 LDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC 276
           +   G + +      GSG+ +     D ++R ++S+EE       ++  A + D  SGG 
Sbjct: 113 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 172
Query: 277 VRLYKINGQGWQQVL 291
           +R+  +   G ++++
Sbjct: 173 IRMVVLTAAGVERLI 187

>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 205

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 87/195 (44%), Gaps = 13/195 (6%)
Query: 100 LLHPVYTGGERCGPFSQSST---VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKE 156
           ++   +  G   G  S+++T   + +  + ++  V   I C  +G+AAD       +   
Sbjct: 12  IMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYH 71
Query: 157 CKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYM 216
            + Y  +Y T  T   AA++   +  + +         + L+ G ++A YD+    ++Y 
Sbjct: 72  LELYTSQYGTPST-ETAASVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYT 121
Query: 217 LDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC 276
           +   G + +      GSG+ +     D ++R ++S+EE       ++  A + D  SGG 
Sbjct: 122 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 181
Query: 277 VRLYKINGQGWQQVL 291
           +R+  +   G ++++
Sbjct: 182 IRMVVLTAAGVERLI 196

>pdb|1VSY|H Chain H, Proteasome Activator Complex Length = 196

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 87/195 (44%), Gaps = 13/195 (6%)
Query: 100 LLHPVYTGGERCGPFSQSST---VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKE 156
           ++   +  G   G  S+++T   + +  + ++  V   I C  +G+AAD       +   
Sbjct: 3   IMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYH 62
Query: 157 CKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYM 216
            + Y  +Y T  T   AA++   +  + +         + L+ G ++A YD+    ++Y 
Sbjct: 63  LELYTSQYGTPST-ETAASVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYT 112
Query: 217 LDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC 276
           +   G + +      GSG+ +     D ++R ++S+EE       ++  A + D  SGG 
Sbjct: 113 IPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGV 172
Query: 277 VRLYKINGQGWQQVL 291
           +R+  +   G ++++
Sbjct: 173 IRMVVLTAAGVERLI 187

>pdb|2H6J|H Chain H, Crystal Structure Of The Beta F145a Rhodococcus Proteasome (Casp Target) Length = 294

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 139 LAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLS 198
           +AG A   +  +   A E + YE      +T    AN L +MVR    GN  + +  GL+
Sbjct: 110 IAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVR----GNLGAAM-QGLA 164
Query: 199 FGTLMAAYD-----EILGPQLYMLDNTGLLIEGTK--FCVGSGAEYAQAILDTDYRPDLS 251
              L+  YD     E    ++   D  G   E       VGSG+  A++ L   Y PD  
Sbjct: 165 VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLAAKSALKKIYSPDSD 224
Query: 252 EEEAYALATSAIYHACRRDIHSGG 275
           EE A   A  ++Y A   D  +GG
Sbjct: 225 EETALRAAIESLYDAADDDSATGG 248

>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus Length = 246

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 6/147 (4%)
Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
           S  +  +T  ++  +   I    +G  AD    +     E +     Y   +T++  A  
Sbjct: 56  SKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKK 115
Query: 177 LVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236
           + +  ++Y    +    P G+S   L+A  +E+  P+LY  D +G L+E     +G G  
Sbjct: 116 ICDFKQQY--TQYGGVRPFGVSL--LIAGVNEV--PKLYETDPSGALLEYKATAIGMGRM 169
Query: 237 YAQAILDTDYRPDLSEEEAYALATSAI 263
                 + +YR DLS ++A  L   A+
Sbjct: 170 AVTEFFEKEYRDDLSFDDAMVLGLVAM 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	1e-53
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	2e-07
1iru_L	204	20S proteasome; cell cycle, immune response, prote	5e-53
1iru_L	204	20S proteasome; cell cycle, immune response, prote	2e-07
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	2e-52
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	1e-08
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	3e-52
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	4e-07
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	3e-49
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	6e-09
1iru_H	205	20S proteasome; cell cycle, immune response, prote	3e-49
1iru_H	205	20S proteasome; cell cycle, immune response, prote	1e-06
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	3e-49
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	3e-07
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	2e-47
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	3e-07
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	5e-47
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	4e-08
1iru_I	234	20S proteasome; cell cycle, immune response, prote	6e-47
1iru_I	234	20S proteasome; cell cycle, immune response, prote	3e-07
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	1e-46
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	1e-08
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	7e-46
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	1e-06
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	3e-45
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	2e-07
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	2e-44
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	6e-06
1iru_J	205	20S proteasome; cell cycle, immune response, prote	3e-44
1iru_J	205	20S proteasome; cell cycle, immune response, prote	1e-07
1iru_K	201	20S proteasome; cell cycle, immune response, prote	1e-43
1iru_K	201	20S proteasome; cell cycle, immune response, prote	1e-05
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	2e-43
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	4e-06
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	5e-43
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	7e-08
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	5e-43
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	1e-07
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	2e-41
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	2e-07
1iru_M	213	20S proteasome; cell cycle, immune response, prote	6e-41
1iru_M	213	20S proteasome; cell cycle, immune response, prote	8e-07
1iru_N	219	20S proteasome; cell cycle, immune response, prote	1e-40
1iru_N	219	20S proteasome; cell cycle, immune response, prote	1e-07
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	6e-38
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	4e-06
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	9e-37
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	9e-07
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	2e-35
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	2e-06
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	6e-17
1iru_G	254	20S proteasome; cell cycle, immune response, prote	4e-14
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	6e-14
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	9e-14
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	9e-14
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	1e-13
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	3e-13
1iru_C	261	20S proteasome; cell cycle, immune response, prote	5e-13
1iru_B	233	20S proteasome; cell cycle, immune response, prote	2e-12
1iru_E	241	20S proteasome; cell cycle, immune response, prote	2e-12
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	3e-12
1iru_A	246	20S proteasome; cell cycle, immune response, prote	4e-12
1iru_A	246	20S proteasome; cell cycle, immune response, prote	5e-12
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	1e-11
1iru_D	248	20S proteasome; cell cycle, immune response, prote	2e-11
1iru_F	263	20S proteasome; cell cycle, immune response, prote	4e-11
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	6e-11
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	1e-10
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	7e-10
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	7e-10
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	1e-07
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	8e-05
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	3e-04

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score =  173 bits (440), Expect = 1e-53
 Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 8/190 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + V   T  +VI ++  +L T+AG AADC +W   L  +C+ +E + +  +++  A+
Sbjct: 21  TAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L N+V +Y+          GLS GT++  Y    GP +Y +D+ G  ++G  FCVGSG
Sbjct: 81  KILSNLVYQYK--------GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 132

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
             +A  +LD++Y+ DLS E+A  L   +I  A  RD +SGG V LY +   GW    + D
Sbjct: 133 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHD 192

Query: 295 VKDIYNDRKE 304
           V +++   KE
Sbjct: 193 VGELFWKVKE 202

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TTTL FR+  GII+A DSRATA + + SQ + +
Sbjct: 1  TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKR 33

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score =  171 bits (436), Expect = 5e-53
 Identities = 73/193 (37%), Positives = 110/193 (56%), Gaps = 9/193 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+
Sbjct: 21  TAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            LL NMV +Y+          GLS GT++  +D+  GP LY +D+ G  I G  F VGSG
Sbjct: 81  KLLANMVYQYK--------GMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSG 131

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           + YA  ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V S +
Sbjct: 132 SVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDN 191

Query: 295 VKDIYNDRKEAPP 307
           V D++     + P
Sbjct: 192 VADLHEKYSGSTP 204

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TTTL F++  G+I+A DSRATA   I SQ + K
Sbjct: 1  TTTLAFKFRHGVIVAADSRATAGAYIASQTVKK 33

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score =  172 bits (438), Expect = 2e-52
 Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 8/190 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + V   T  +VI ++  +L T+AG AADC +W   L  +C+ +E + +  +++  A+
Sbjct: 96  TAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 155

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L N+V +Y+          GLS GT++  Y    GP +Y +D+ G  ++G  FCVGSG
Sbjct: 156 KILSNLVYQYKGA--------GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 207

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
             +A  +LD++Y+ DLS E+A  L   +I  A  RD +SGG V LY +   GW    + D
Sbjct: 208 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHD 267

Query: 295 VKDIYNDRKE 304
           V +++   KE
Sbjct: 268 VGELFWKVKE 277

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 4   TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
            GTTTL FR+  GII+A DSRATA + + SQ + K
Sbjct: 74  HGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKK 108

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score =  170 bits (432), Expect = 3e-52
 Identities = 16/184 (8%), Positives = 34/184 (18%), Gaps = 9/184 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           V   +++I           V    +          K         AA   +    +    
Sbjct: 35  VRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVL-- 92

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVGSGAEYAQAILDTDY 246
                  +       +          + ML      I+       G        ++    
Sbjct: 93  ------IDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID 146

Query: 247 RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP 306
           + +    E         Y A          + L +   +    +       I    K   
Sbjct: 147 KNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANE 206

Query: 307 PGGG 310
               
Sbjct: 207 DIKP 210

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 2/33 (6%), Positives = 3/33 (9%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          +              T          V      
Sbjct: 2  SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREA 34

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score =  162 bits (412), Expect = 3e-49
 Identities = 39/187 (20%), Positives = 76/187 (40%), Gaps = 11/187 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + + H    ++  + +    T+AG   D    +  +  E + Y  + R  M I   A
Sbjct: 29  TMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA 88

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            LL NM+ + +                L+   D    P ++ +D  G  +E      GSG
Sbjct: 89  TLLSNMLNQVK--------YMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSG 138

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSR 293
           + +   +L++ Y   ++ +E   L   AI  A +RD  SGG + +  I  + G+ Q+ + 
Sbjct: 139 SPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTD 198

Query: 294 DVKDIYN 300
            ++    
Sbjct: 199 QIESRIR 205

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TGTTT+G    + +I+AT+ R T  + I+ +   K
Sbjct: 7  TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKK 41

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score =  161 bits (411), Expect = 3e-49
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 13/196 (6%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  S + +  + ++ P+   I C  +G+AAD      ++  +   +  +      +  AA
Sbjct: 21  TTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           +L   M  +YR           L  G ++A +D   G Q+Y +   G+++  +    GSG
Sbjct: 81  SLFKEMCYRYR---------EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSG 131

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW--QQVLS 292
           + Y    +D  YR  +++EE      +A+  A  RD  SGG +RL  I   G   Q +L 
Sbjct: 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191

Query: 293 RDVKDIYNDRKEAPPG 308
             +          PP 
Sbjct: 192 DQIPKF--AVATLPPA 205

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +  ++  G++L  DSR T    I ++  +K
Sbjct: 1  TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK 33

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score =  161 bits (411), Expect = 3e-49
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 10/192 (5%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
            +  + +    + ++  ++  +  T AG+  D  +    +  E   YE +     T+R  
Sbjct: 20  ATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAI 79

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVG 232
           A L  N++  YR                L+   D   G  +Y +D  G  IE       G
Sbjct: 80  ATLTSNLLNSYR--------YFPYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATG 130

Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS 292
           SG+  A  +L+  + P++  +EA  LA  AIY A +RD  SG  + + KI    + Q   
Sbjct: 131 SGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSP 190

Query: 293 RDVKDIYNDRKE 304
            +V+ I    ++
Sbjct: 191 EEVEQILAKFRK 202

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TTT+G    +G+++AT+ RAT  + I S+   K
Sbjct: 1  TTTVGLVCKDGVVMATEKRATMGNFIASKAAKK 33

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score =  157 bits (400), Expect = 2e-47
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 10/190 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +Q   V      ++  +S  I C  AG AAD       +    + +         +  A 
Sbjct: 21  TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L   + KY+           +    ++A  D   G  L+ +   G    G    +GSG
Sbjct: 81  QMLKQHLFKYQ---------GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSG 130

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           +  A A+L++ ++ DL++EEA  LA+ AI      D+ SG  V +  +      + L   
Sbjct: 131 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190

Query: 295 VKDIYNDRKE 304
           +     + K+
Sbjct: 191 LTPNVREEKQ 200

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +G ++  G+++A D+R+T   ++  +   K
Sbjct: 1  TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK 33

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score =  156 bits (396), Expect = 5e-47
 Identities = 35/176 (19%), Positives = 78/176 (44%), Gaps = 10/176 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + + +  + ++  V   I C  +G+AAD       +    + Y  +Y T  T   AA
Sbjct: 30  TTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTET-AA 88

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           ++   +  + +         + L+ G ++A YD+    ++Y +   G + +      GSG
Sbjct: 89  SVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSG 139

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
           + +     D ++R ++S+EE       ++  A + D  SGG +R+  +   G +++
Sbjct: 140 STFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL 195

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
           G + +   + +G+IL  DSR T    I ++  +K
Sbjct: 8  LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDK 42

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score =  157 bits (398), Expect = 6e-47
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 13/197 (6%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           ++   V      ++  +S +I C  AG AAD       ++   + +         +  A 
Sbjct: 21  TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L  M+ +YR           +    ++   D   GP LY +   G   +     +GSG
Sbjct: 81  RMLKQMLFRYR---------GYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSG 130

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           +  A A+ +  +RPD+ EEEA  L + AI      D+ SG  + L  I+      +    
Sbjct: 131 SLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYT 190

Query: 295 VKDIYNDRKEA---PPG 308
           V +    R        G
Sbjct: 191 VPNKKGTRLGRYRCEKG 207

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT  G  Y +GI+L  D+RAT   ++  +  +K
Sbjct: 1  TTIAGVVYKDGIVLGADTRATEGMVVADKNCSK 33

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score =  157 bits (399), Expect = 1e-46
 Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 10/190 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +Q   V      ++  +S  I C  AG AAD       +    + +         +  A 
Sbjct: 50  TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 109

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L   + KY+           +    ++A  D   G  L+ +   G    G    +GSG
Sbjct: 110 QMLKQHLFKYQ---------GHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSG 159

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           +  A A+L++ ++ DL++EEA  LA+ AI      D+ SG  V +  +      + L   
Sbjct: 160 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 219

Query: 295 VKDIYNDRKE 304
           +     + K+
Sbjct: 220 LTPNVREEKQ 229

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TGTT +G ++  G+++A D+R+T   ++  +   K
Sbjct: 28 TGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK 62

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score =  153 bits (388), Expect = 7e-46
 Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 12/190 (6%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
            S  + V +    ++ P+   I C L+G+AAD        A + + +  +      +  A
Sbjct: 20  VSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAA 79

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
           AN++ N+  KYR           L    ++A +D+            G+LI       GS
Sbjct: 80  ANVVKNISYKYR---------EDLLAHLIVAGWDQR-EGGQVYGTMGGMLIRQPFTIGGS 129

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW--QQVL 291
           G+ Y    +D  Y+P ++ EE     T+AI  A  RD  SGG + L  I   G   + +L
Sbjct: 130 GSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVIL 189

Query: 292 SRDVKDIYND 301
             ++   Y++
Sbjct: 190 GDELPKFYDE 199

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +   +  G+++ +DSR +A   +V++  +K
Sbjct: 1  TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDK 33

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score =  152 bits (386), Expect = 3e-45
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 10/174 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  S V   +  ++  ++  I C  AG AAD        A + + +         +    
Sbjct: 21  TNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L   + +Y+           +    ++   D   GPQLY +   G         +GSG
Sbjct: 81  RILRQTLFRYQ---------GHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSG 130

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
              A A+L+  ++P+++ E A  L   AI      D+ SGG V    I   G +
Sbjct: 131 QGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAK 184

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT  G  + +G+IL  D+RAT + ++  +   K
Sbjct: 1  TTIAGLVFRDGVILGADTRATNDSVVADKSCEK 33

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score =  149 bits (378), Expect = 2e-44
 Identities = 37/183 (20%), Positives = 73/183 (39%), Gaps = 7/183 (3%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           ++  +V  ++  +   +S   L + AG A D V +   +    + Y  +    ++ +  +
Sbjct: 22  TRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEIL-GPQLYMLDNTGLLIEGTKFCVGS 233
           + +   + K       S+ P       L+  YD+    P+LY +D  G  +E      G 
Sbjct: 82  SFVRQELAKSI----RSRRP--YQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGY 135

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
              Y  ++LD  YRPD++ EE   L    +    +R       V +  ++  G +QV   
Sbjct: 136 SGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDF 195

Query: 294 DVK 296
             +
Sbjct: 196 QAQ 198

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
             LG R  + +ILA+    T    ++    +K
Sbjct: 2  DIILGIRVQDSVILASSKAVTRGISVLKDSDDK 34

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score =  149 bits (378), Expect = 3e-44
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           + P+   +   LAG A D       L      YE K    +      +++ N++ + R G
Sbjct: 42  IFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG 101

Query: 188 NHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQAILDTD 245
                         ++A  D +   P +  LD  G  +    F V G+ AE    + ++ 
Sbjct: 102 --------PYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESL 153

Query: 246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
           + P++  +  +   + A+ +A  RD  SG  V ++ I     
Sbjct: 154 WEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI 195

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 7/38 (18%), Positives = 13/38 (34%)

Query: 1  MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          M   G   +  +    + +A D R      +V+    K
Sbjct: 4  MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQK 41

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score =  147 bits (373), Expect = 1e-43
 Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 8/177 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           + +     +   ++  +S  IL    G A D V +   + K  + Y+ +    ++   AA
Sbjct: 22  ASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81

Query: 175 NLLVNMV-RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
           N     +    R+               L+A YDE  GP LY +D    L +      G 
Sbjct: 82  NFTRRNLADCLRSRTP-------YHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGY 134

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
           GA    +ILD  Y P +S E A  L    +    +R I +     +  I+  G   +
Sbjct: 135 GAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDL 191

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
             +G + P+ +++A+D  A +N + +    +K
Sbjct: 2  EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDK 34

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score =  148 bits (374), Expect = 2e-43
 Identities = 48/215 (22%), Positives = 72/215 (33%), Gaps = 22/215 (10%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +Q + +      +V          +AG A   +  +   A E + YE      +T    A
Sbjct: 21  TQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-----EILGPQLYMLDNTGLLIE--GT 227
           N L +MVR             GL+   L+  YD     E    ++   D  G   E    
Sbjct: 81  NRLASMVRGNL-----GAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 135

Query: 228 KFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVR-------LY 280
              VGSG+ +A++ L   Y PD  EE A   A  ++Y A   D  +GG            
Sbjct: 136 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 195

Query: 281 KINGQGWQQVLSRDVKDI---YNDRKEAPPGGGDH 312
            I   G   V      ++       +    G   H
Sbjct: 196 TITQAGAVHVSEETTSELARRIVAERTEQGGSARH 230

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +   Y  G++LA D RAT  +LI S+ + K
Sbjct: 1  TTIVALTYKGGVLLAGDRRATQGNLIASRDVEK 33

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score =  148 bits (375), Expect = 5e-43
 Identities = 44/214 (20%), Positives = 74/214 (34%), Gaps = 22/214 (10%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +Q + +      +V          +AG AA  V +    A E + YE      +T     
Sbjct: 78  TQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKI 137

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEIL-----GPQLYMLDNTGLL-IEGTK 228
           N L  MVR      + +    GL    L+A YD          ++   D  G   IE   
Sbjct: 138 NRLAIMVR-----GNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG 192

Query: 229 F-CVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYK------ 281
           +  VGSG+ +A++ +   Y      +    +A  A+Y A   D  +GG   +        
Sbjct: 193 YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV 252

Query: 282 -INGQGWQQVLSRDVKDI---YNDRKEAPPGGGD 311
            I+  G   V    + ++     + +      G 
Sbjct: 253 IIDADGAVDVPESRIAELARAIIESRSGADTFGS 286

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           GTT +  +YP G+++A D R+T  ++I  + + K   
Sbjct: 56 HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYI 93

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score =  148 bits (375), Expect = 5e-43
 Identities = 47/213 (22%), Positives = 70/213 (32%), Gaps = 22/213 (10%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +Q + +       V          +AG A   +  +   A E + YE      +T    A
Sbjct: 86  TQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 145

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-----EILGPQLYMLDNTGLLIE--GT 227
           N L +MVR             GL+   L+  YD     E    ++   D  G   E    
Sbjct: 146 NRLASMVRGNL-----GAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 200

Query: 228 KFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVR-------LY 280
              VGSG+ +A++ L   Y PD  EE A   A  ++Y A   D  +GG            
Sbjct: 201 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 260

Query: 281 KINGQGWQQVLSRDVKDI---YNDRKEAPPGGG 310
            I   G   V      ++       +    G  
Sbjct: 261 TITQAGAVHVSEETTSELARRIVAERTEQGGSA 293

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
           GTT +   Y  G++LA D RAT  +LI S+ +  
Sbjct: 64 HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEA 98

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score =  141 bits (358), Expect = 2e-41
 Identities = 32/177 (18%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
               S    N   ++      +   + G A D          +   Y+ K    +     
Sbjct: 28  LGSQSLGVSNKFEKIFHYGH-VFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETF 86

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-PQLYMLDNTGLLIEGTKFCV- 231
             L+ + + + R G            G ++A  +   G P +   D  G + E   F V 
Sbjct: 87  TQLVSSSLYERRFG--------PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVS 138

Query: 232 GSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
           G+ ++    + ++ Y P+L  E+ +   + A+ +A  RD  SG    +Y I      
Sbjct: 139 GTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVV 195

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
           G   +     + + +A D R  +  L VS K  K
Sbjct: 7  NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEK 41

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score =  140 bits (356), Expect = 6e-41
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 17/186 (9%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
            S+  ++    S +   ++   +   +G   DC+     +    K Y+      MT    
Sbjct: 29  LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 88

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
           A +L  ++   R                ++   DE     +Y  D  G     +    GS
Sbjct: 89  AAMLSTILYSRRFF--------PYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGS 140

Query: 234 GAEYAQAILD---------TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING 284
            +   Q +LD               LS + A  L       A  RD+++G  +R+  +  
Sbjct: 141 ASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTK 200

Query: 285 QGWQQV 290
           +G ++ 
Sbjct: 201 EGIREE 206

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
           G T L     +  I+A+D+R +    I ++   K
Sbjct: 8  NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPK 42

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score =  140 bits (355), Expect = 1e-40
 Identities = 39/178 (21%), Positives = 64/178 (35%), Gaps = 12/178 (6%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG--MTIRH 172
           S  S        +++ V++S +   +G+ AD  Y    L +     E     G   + R 
Sbjct: 29  SYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEEL-LGDGHSYSPRA 87

Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
             + L   +   R     SK+ N L    ++  Y +     L  +D  G+  E      G
Sbjct: 88  IHSWLTRAMYSRR-----SKM-NPLWNTMVIGGYADG-ESFLGYVDMLGVAYEAPSLATG 140

Query: 233 SGAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
            GA  AQ +L       P LS+ EA  L    +     RD  S    +   +  +G +
Sbjct: 141 YGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVE 198

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TGT+ LG ++  G+++A D   +   L   + +++
Sbjct: 7  TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR 41

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score =  133 bits (336), Expect = 6e-38
 Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 26/202 (12%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRH 172
                ++      +V     +I+ +  G AAD    +       K Y   +    ++I  
Sbjct: 29  NITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINS 88

Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
           AA  + +++   R               T++A  DE     +Y  D  G          G
Sbjct: 89  AARNIQHLLYGKRFF--------PYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGG 140

Query: 233 SGAEYAQAILDTDY-----------------RPDLSEEEAYALATSAIYHACRRDIHSGG 275
           + A      LD                       LS EE   L   +   A  R I  G 
Sbjct: 141 AAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGD 200

Query: 276 CVRLYKINGQGWQQVLSRDVKD 297
            + +  +   G ++      +D
Sbjct: 201 GLEILIVTKDGVRKEFYELKRD 222

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
           G T LG    +  +LA D+R   +  I S+   K
Sbjct: 8  NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPK 42

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  130 bits (329), Expect = 9e-37
 Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 16/188 (8%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG-----MT 169
           S  S +  N   ++IPV  + +  ++G+ +D  +    L                   + 
Sbjct: 29  SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALE 88

Query: 170 IRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF 229
             +    L  ++ + R+        N L    ++A         L  ++  G+       
Sbjct: 89  PSYIFEYLATVMYQRRSK------MNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTL 142

Query: 230 CVGSGAEYAQAILDTDYR-----PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING 284
             G GA  A  +L          P  + + A     +A+     RD  S     L  I+ 
Sbjct: 143 ATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDK 202

Query: 285 QGWQQVLS 292
                   
Sbjct: 203 NTGLTFKK 210

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 3  ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          +TGT+ +  +Y  G+I+A D+  +   L+    + +
Sbjct: 6  VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER 41

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  128 bits (323), Expect = 2e-35
 Identities = 31/188 (16%), Positives = 58/188 (30%), Gaps = 16/188 (8%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG-----M 168
            S  S +  N   ++IPV  + +  ++G+ +D  +    L                   +
Sbjct: 61  GSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEAL 120

Query: 169 TIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTK 228
              +    L  ++ + R     SK+ N L    ++A         L  ++  G+      
Sbjct: 121 EPSYIFEYLATVMYQRR-----SKM-NPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPT 174

Query: 229 FCVGSGAEYAQAILDTDYR-----PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN 283
              G GA  A  +L          P  + + A     +A+     RD  S     L  I+
Sbjct: 175 LATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIID 234

Query: 284 GQGWQQVL 291
                   
Sbjct: 235 KNTGLTFK 242

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 9/36 (25%), Positives = 20/36 (55%)

Query: 3  ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          +TGT+ +  +Y  G+I+A D+  +   L+    + +
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER 74

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score = 78.1 bits (192), Expect = 6e-17
 Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 10/152 (6%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRHAANLLVNMVRKYRT 186
           V  +   +     G   +      +           Y R  +T R  AN     +     
Sbjct: 53  VSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTL----- 107

Query: 187 GNHSSKIPNGLSFGTLMA---AYDEILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQAIL 242
           G   ++ P        +A          PQLY +   G +++   F V G   E     +
Sbjct: 108 GTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAM 167

Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSG 274
              YR DL  E A  +A +A+      +    
Sbjct: 168 RESYRADLDLEAAVGIAVNALRQGGAGEGEKR 199

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F Length = 254

 Score = 69.7 bits (171), Expect = 4e-14
 Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 4/139 (2%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  V   +   +AG  AD         +E   +   +   + ++H A+ +   V  Y   
Sbjct: 66  LFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAY--T 123

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
            +S+  P G SF  ++ +Y    G QLYM+D +G+        +G   + A+  ++    
Sbjct: 124 LYSAVRPFGCSF--MLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM 181

Query: 248 PDLSEEEAYALATSAIYHA 266
            +++  +        IY  
Sbjct: 182 KEMTCRDIVKEVAKIIYIV 200

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242

 Score = 69.2 bits (170), Expect = 6e-14
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 4/142 (2%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           ++ +   I C ++G  AD    +         +   Y   + +      + ++  ++   
Sbjct: 59  IVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRF-GE 117

Query: 188 NHSSKIPNGL-SFG--TLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244
             S +       FG   L+A +D   G QL+  + +G         +GSG+E AQA L  
Sbjct: 118 GASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLN 177

Query: 245 DYRPDLSEEEAYALATSAIYHA 266
           ++   L+ +EA  L    +   
Sbjct: 178 EWHSSLTLKEAELLVLKILKQV 199

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248

 Score = 68.8 bits (168), Expect = 9e-14
 Identities = 27/155 (17%), Positives = 46/155 (29%), Gaps = 10/155 (6%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRHAANLLVNMVRKYRT 186
           +  +   +    AG   +         +        Y R  +T R  AN+    +    T
Sbjct: 53  ISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFT 112

Query: 187 GNHSSKIPNGLSFGTLMA---AYDEILGPQLYMLDNTGLLIEGTKFCV-GSGAEYAQAIL 242
                  P  +     +A    Y E   P+LY +   G + +   F V G   E     L
Sbjct: 113 ---EQAKPYEVEL--CVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANAL 167

Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCV 277
              Y  + S  +A  +A +A+              
Sbjct: 168 KESYAENASLTDALRIAVAALRAGSADTSGGDQPT 202

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Length = 246

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +   I    +G  AD    +     E +     Y   +T++  A  + +  ++Y   
Sbjct: 67  IYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQY--T 124

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
            +    P G+S   L+A  +E   P+LY  D +G L+E     +G G        + +YR
Sbjct: 125 QYGGVRPFGVSL--LIAGVNE--VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR 180

Query: 248 PDLSEEEAYALATSAIYHA 266
            DLS ++A  L   A+  +
Sbjct: 181 DDLSFDDAMVLGLVAMGLS 199

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ... Length = 244

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 4/139 (2%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  ++  I   +AG  AD    +++     + Y   Y   + +      L ++ + Y   
Sbjct: 65  LYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY--T 122

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
            H    P G+SF  + A YD+  G QLY  + +G         VG+    AQ +L  DY+
Sbjct: 123 QHGGLRPFGVSF--IYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK 180

Query: 248 PDLSEEEAYALATSAIYHA 266
            D+  ++A  LA   +   
Sbjct: 181 DDMKVDDAIELALKTLSKT 199

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ... Length = 250

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKG-YECKYRTGMTIRHAANLLVNMVRKYRT 186
           V  ++  I    +G   D    +    K     Y+  Y      +   + +  ++++   
Sbjct: 64  VSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEA-- 121

Query: 187 GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDY 246
                  P G+S   L+A +DE  G  LY +D +G         +G G+  A+  L+  +
Sbjct: 122 TQSGGVRPFGVSL--LIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW 179

Query: 247 RPDLSEEEAYALATSAIYHA 266
             +L  E+A  +A   +  +
Sbjct: 180 NDELELEDAIHIALLTLKES 199

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261

 Score = 67.0 bits (164), Expect = 5e-13
 Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
                S ++  ++  + C++AG  +D     + L    + Y  +Y+  +        L +
Sbjct: 57  DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 116

Query: 180 MVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQ 239
           + + Y       K P G+S   L   +D+  G QLY  D +G        C+G+ +  A 
Sbjct: 117 IKQAY--TQFGGKRPFGVSL--LYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAV 172

Query: 240 AILDTDYR-PDLSEEEAYALATSAIYHA 266
           ++L  DY+  +++ + A ALA   +   
Sbjct: 173 SMLKQDYKEGEMTLKSALALAIKVLNKT 200

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A Length = 233

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 5/139 (3%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           V P++  I    +G   D    +H   K  + Y   Y+  +        + +++++Y   
Sbjct: 64  VEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEY--T 121

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
                 P G+S   L+  ++E   P L+  D +G         +G      +  L+  Y 
Sbjct: 122 QSGGVRPFGVSL--LICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 178

Query: 248 PDLSEEEAYALATSAIYHA 266
            DL  E+A   A   +  +
Sbjct: 179 EDLELEDAIHTAILTLKES 197

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D Length = 241

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKY--R 185
           ++ + + I C ++G  AD    +     E + +   Y   MT+      + N+  ++   
Sbjct: 67  IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEE 126

Query: 186 TGNHSSKI-PNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT 244
             +  +   P G++   L    DE  GPQL+ +D +G  ++     +GS +E AQ+ L  
Sbjct: 127 DADPGAMSRPFGVAL--LFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE 183

Query: 245 DYRPDLSEEEAYALATSAIYHA 266
            Y   ++ +EA   +   +   
Sbjct: 184 LYHKSMTLKEAIKSSLIILKQV 205

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Length = 233

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +   +    +G  AD    +       +  +  Y + + I +    + + +++Y   
Sbjct: 67  IQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQY--T 124

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
            +    P G+S   + A  D+ +GP+L+  D  G + E     +GSG +   + L+ +Y+
Sbjct: 125 QYGGVRPYGVSL--IFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK 181

Query: 248 PDLSEEEAYALATSAIYHA 266
            +L E+EA  L   A+  +
Sbjct: 182 ENLPEKEAVTLGIKALKSS 200

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G Length = 246

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  ++ +I C + G  AD    +     E   ++ KY   + +      + ++ + Y   
Sbjct: 69  LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVY--T 126

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
            ++   P G     ++   DE  GPQ+Y  D  G          G     + + L+   +
Sbjct: 127 QNAEMRPLGCCM--ILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184

Query: 248 --PDLSEEEAYALATSAIYHA 266
              D + E+    A + +   
Sbjct: 185 KKFDWTFEQTVETAITCLSTV 205

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ... Length = 243

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 19/150 (12%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAK----ECKGYECKYRTGMTIRHAANLLVNMVRK 183
           +  +S +I   + G   D      + A     E   +  KY   M     A  + N+ + 
Sbjct: 63  IFCISRTIGMVVNGPIPDA----RNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQI 118

Query: 184 YRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD 243
           Y     +   P G+       + DE LGP +Y  D  G  +       G   +     L+
Sbjct: 119 Y--TQRAYMRPLGVIL--TFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLE 174

Query: 244 TDYR-------PDLSEEEAYALATSAIYHA 266
             ++        + S E+    A + +  A
Sbjct: 175 NHFKKSKIDHINEESWEKVVEFAITHMIDA 204

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +  +  ++    AG  AD    ++    EC+ +       +T+ +    + ++ ++Y   
Sbjct: 62  ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRY--T 119

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
             + + P G+S   L+  +D    P+LY  D +G         +G GA+  +  L+ +Y 
Sbjct: 120 QSNGRRPFGISA--LIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 177

Query: 248 --PDLSEEEAYALATSAIYH 265
                +++    L   A+  
Sbjct: 178 DEAIETDDLTIKLVIKALLE 197

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E Length = 263

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 22/141 (15%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           ++ V + I  ++AG  AD     + + +EC      +   + +    +L+ +  +     
Sbjct: 63  ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIP--T 120

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
               + P G+    L+A YD+ +GP ++    +    +     +G+ ++ A+  L+    
Sbjct: 121 QRYGRRPYGVGL--LIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS 177

Query: 248 --PDLSEEEAYALATSAIYHA 266
              + +  E       A+   
Sbjct: 178 EFMECNLNELVKHGLRALRET 198

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ... Length = 241

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 16/155 (10%)

Query: 120 VPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLA----KECKGYECKYRTGMTIRHAAN 175
               T  +V  + S ++ + +G  AD       L      E + +       +T+ +   
Sbjct: 54  DTRITPSKVSKIDSHVVLSFSGLNADS----RILIEKARVEAQSHRLTLEDPVTVEYLTR 109

Query: 176 LLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +  + ++Y         P G+S   L+A +D     P+LY  + +G+    +   +G  
Sbjct: 110 YVAGVQQRY--TQSGGVRPFGVST--LIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRN 165

Query: 235 AEYAQAILDTDY---RPDLSEEEAYALATSAIYHA 266
           ++  +  L+ +Y    P  + EE   L   ++   
Sbjct: 166 SKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEV 200

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ... Length = 233

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 9/143 (6%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +I     +  +LAG A D     + L ++C      +   + +  A +LL +  +K    
Sbjct: 62  IIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKN--T 119

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYR 247
                 P G+    L+  YD+  G  L     +G + E     +G+ ++ A+  L+    
Sbjct: 120 QSYGGRPYGVGL--LIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD 176

Query: 248 ----PDLSEEEAYALATSAIYHA 266
                D + +E       AI  +
Sbjct: 177 TFIKIDGNPDELIKAGVEAISQS 199

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 122 HNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV 181
              + ++  V   I C  +G   D  + ++   +E   ++  Y+T + I   A+ L   V
Sbjct: 61  PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 120

Query: 182 RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241
           + +    ++S  P G+S   +    D+  G  LYML+ +G          G G + A+A 
Sbjct: 121 QAH--TLYNSVRPFGVST--IFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 175

Query: 242 L---DTDYRPDLSEEEAYALATSAIYHA 266
           L      +   LS  EA   A   IY A
Sbjct: 176 LEKLVDHHPEGLSAREAVKQAAKIIYLA 203

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ... Length = 244

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 122 HNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV 181
              + ++  V   I C  +G   D  + ++   +E   ++  Y+T + I   A+ L   V
Sbjct: 57  PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 116

Query: 182 RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241
           + +    ++S  P G+S   +    D+  G  LYML+ +G          G G + A+A 
Sbjct: 117 QAH--TLYNSVRPFGVST--IFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 171

Query: 242 L---DTDYRPDLSEEEAYALATSAIYHA 266
           L      +   LS  EA   A   IY A
Sbjct: 172 LEKLVDHHPEGLSAREAVKQAAKIIYLA 199

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 16/151 (10%)

Query: 132 SSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSS 191
           +  +L   AG+ AD          + + Y         ++ AA  L    R  +      
Sbjct: 45  NGKVLAGFAGSVADAFTLFEKFEAKLEEYN------GNLKRAAVELAKEWRSDKV----- 93

Query: 192 KIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDLS 251
                L     M          L       +  +     +GSG  YA A      +    
Sbjct: 94  -----LRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGE 148

Query: 252 EEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
              A  +A +A+  A    +++   + L ++
Sbjct: 149 SMSASEIARAALETAGEICVYTNDQIILEEL 179

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 18/170 (10%)

Query: 115 SQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
           S  +TV    + +V  + +  +L   AG  AD         ++ + ++        +  +
Sbjct: 21  SLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQ------GHLLKS 74

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
           A  L    R  R                ++   DE     +  + +     E     +GS
Sbjct: 75  AVELAKDWRTDRALRK---------LEAMLIVADEKESLIITGIGDVVQPEEDQILAIGS 125

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN 283
           G  YA +        + +E  A+ +   ++  A    + +     + ++ 
Sbjct: 126 GGNYALS--AARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP 173

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 29/163 (17%), Positives = 51/163 (31%), Gaps = 21/163 (12%)

Query: 115 SQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
           +  STV    + +V  +    +L   AG+ AD +        + + +         +  A
Sbjct: 21  TFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWG------GNLTKA 74

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
           A  L    R  R           L     +    +     +   +   +  +     +GS
Sbjct: 75  AVELAKDWRTDRV----------LRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGS 124

Query: 234 GAEYAQAILDTDYR-PDLSEEEAYALATSAIYHACRRDIHSGG 275
           G  YA A      R  DLS  E   +   A+  A    I++  
Sbjct: 125 GGPYALAAAKALLRNTDLSARE---IVEKAMTIAGEICIYTNQ 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	100.0
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	100.0
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	83.78
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	83.25
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	82.62
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	82.09
1iru_C	261	20S proteasome; cell cycle, immune response, prote	81.6
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	81.48
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	81.36
1iru_B	233	20S proteasome; cell cycle, immune response, prote	81.3
1iru_E	241	20S proteasome; cell cycle, immune response, prote	80.59

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=9.8e-48  Score=345.77  Aligned_cols=207  Identities=29%  Similarity=0.406  Sum_probs=195.1

Q ss_pred             CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCC
Q psy14210          5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPP   84 (312)
Q Consensus         5 g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
                      |||+|||+++||||||+|+|+++|.++.++.++|                                              
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~K----------------------------------------------   34 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKK----------------------------------------------   34 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCC----------------------------------------------
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccce----------------------------------------------
Confidence            8999999999999999999999999999999999                                              


Q ss_pred             CCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         85 LSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                 ||+|++|++|+++|+.+|++.+.++++.+++.|++++
T Consensus        35 -------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~   71 (219)
T 3h4p_a           35 -------------------------------------------LYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRT   71 (219)
T ss_dssp             -------------------------------------------EEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -------------------------------------------eEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHc
Confidence                                                       8999999999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC-eeeEccChHHHHHHHH
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAILD  243 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~Le  243 (312)
                      +++++++.+++++++++|.++.      |||+  +++||||||+.++|+||++||+|++++++ +.|+|+|+.+++++||
T Consensus        72 ~~~~~v~~la~~l~~~~~~~~~------~P~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le  143 (219)
T 3h4p_a           72 GRNIPPLACATLLSNILHSSRM------FPFL--TQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLE  143 (219)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTT------TTCC--CCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHH
Confidence            9999999999999999999865      8988  57899999986789999999999999999 9999999999999999


Q ss_pred             hhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCCC
Q psy14210        244 TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPPG  308 (312)
Q Consensus       244 ~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~~  308 (312)
                      +.|+++||+|||++++++||..+++||..++++++|++|+++|+++++++||++++..+++++..
T Consensus       144 ~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~l~~~ei~~~l~~~~~~~~~  208 (219)
T 3h4p_a          144 AGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPKK  208 (219)
T ss_dssp             TSCCTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEEEECCHHHHHHHHHHCC-----
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEEcCHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999877753

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=4.3e-47  Score=346.31  Aligned_cols=210  Identities=15%  Similarity=0.203  Sum_probs=199.8

Q ss_pred             ccc-CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210          2 FIT-GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF   80 (312)
Q Consensus         2 ~~~-g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      +.+ |||+|||+++||||||+|+|++ +.++.++.++|                                          
T Consensus        26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~K------------------------------------------   62 (243)
T 1ryp_A           26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSY------------------------------------------   62 (243)
T ss_dssp             TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCS------------------------------------------
T ss_pred             HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCc------------------------------------------
Confidence            346 9999999999999999999999 79999988888                                          


Q ss_pred             CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210         81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~  160 (312)
                                                                     ||+|++|++|+++|+.+|++.++++++.+++.|
T Consensus        63 -----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~   95 (243)
T 1ryp_A           63 -----------------------------------------------IFCISRTIGMVVNGPIPDARNAALRAKAEAAEF   95 (243)
T ss_dssp             -----------------------------------------------EEECSSSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------eEEECCCEEEEEEecHHHHHHHHHHHHHHHHHH
Confidence                                                           999999999999999999999999999999999


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      +++++++++++.+|+++++++|.|++  +++.|||+  +++||||||+.++|+||++||+|++.++++.|+|+|+.++++
T Consensus        96 ~~~~~~~~~v~~la~~l~~~l~~y~~--~~~~rP~~--v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~  171 (243)
T 1ryp_A           96 RYKYGYDMPCDVLAKRMANLSQIYTQ--RAYMRPLG--VILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITT  171 (243)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHH--BTTSCCCS--CEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHhc--cCCccccc--eEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHH
Confidence            99999999999999999999998888  77899998  568999999757899999999999999999999999999999


Q ss_pred             HHHhhCCC-------CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210        241 ILDTDYRP-------DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       241 ~Le~~y~~-------~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      +||+.|++       +||+|||++++++||..+++|| .++++++|++|+++|+++++++||++++..+++++
T Consensus       172 ~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g~~~l~~~ei~~~~~~~~~~~  243 (243)
T 1ryp_A          172 NLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDKFFTLSAENIEERLVAIAEQD  243 (243)
T ss_dssp             HHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTEEEECCHHHHHHHHHHHTTTC
T ss_pred             HHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCeEECCHHHHHHHHHHhhccC
Confidence            99999999       9999999999999999999999 78999999999999999999999999999997753

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=1.5e-46  Score=333.75  Aligned_cols=204  Identities=43%  Similarity=0.750  Sum_probs=194.3

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.++..+|                                               
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-----------------------------------------------   33 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKK-----------------------------------------------   33 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccc-----------------------------------------------
Confidence            799999999999999999999999999999888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|++|++|++||+.+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (204)
T 1iru_L           34 ------------------------------------------VIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNK   71 (204)
T ss_dssp             ------------------------------------------EEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------eEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.+|+      +||+  +++||||||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus        72 ~~~~v~~la~~l~~~~~~~r~------~~~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~  142 (204)
T 1iru_L           72 ERISVAAASKLLANMVYQYKG------MGLS--MGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRG  142 (204)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTT------SCCC--BEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHhCC------CCee--EEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhcc
Confidence            999999999999999999887      4655  6789999998 799999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCC
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPP  307 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~  307 (312)
                      |+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|+++++.+++.+.|
T Consensus       143 ~~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~~~~~  204 (204)
T 1iru_L          143 YSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP  204 (204)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHHHTC---
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEEeCHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999899999999999999999999999999999988766

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=2.6e-46  Score=335.89  Aligned_cols=204  Identities=25%  Similarity=0.408  Sum_probs=192.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~K-------------------------------------------   41 (217)
T 1yar_H            5 LETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKK-------------------------------------------   41 (217)
T ss_dssp             ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-------------------------------------------
T ss_pred             CCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCC-------------------------------------------
Confidence            5689999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|+++++|++||..+|++.+.++++.+++.|+
T Consensus        42 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   75 (217)
T 1yar_H           42 ----------------------------------------------LFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYR   75 (217)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------eEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.++.      |||+  +++|+||||  ++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus        76 ~~~~~~~~v~~la~~l~~~~~~~r~------rp~~--v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  145 (217)
T 1yar_H           76 LQRRVNMPIEAVATLLSNMLNQVKY------MPYM--VQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGV  145 (217)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHhcCC------CCce--EEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHH
Confidence            9999999999999999999999764      8988  578999999  58999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC-CCeEEeChhHHHHHHHHHhc
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING-QGWQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk-~G~~~l~~~eI~~~l~~~~~  304 (312)
                      ||+.|+++||+|||++++++||..+.+||..++++++|++|++ +|+++++++|+++++..++.
T Consensus       146 Le~~~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~~  209 (217)
T 1yar_H          146 LESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGL  209 (217)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHTC
T ss_pred             HHhhcccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998999999999999 89999999999999998753

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=1.6e-46  Score=350.78  Aligned_cols=208  Identities=38%  Similarity=0.680  Sum_probs=196.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.++.++|                                           
T Consensus        72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~K-------------------------------------------  108 (287)
T 3nzj_K           72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKK-------------------------------------------  108 (287)
T ss_dssp             ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-------------------------------------------
T ss_pred             eccCceEEEEEECCEEEEEEccccccCceeecCCcce-------------------------------------------
Confidence            4689999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus       109 ----------------------------------------------I~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~  142 (287)
T 3nzj_K          109 ----------------------------------------------VIEINPFLLGTMAGGAADCQFWETWLGSQCRLHE  142 (287)
T ss_dssp             ----------------------------------------------EEEEETTEEEECEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+|+      +||+  +++||||||+.++|+||++||+|++.++++.|+|+|+.+++++
T Consensus       143 ~~~~~~isv~~la~~ls~~l~~~r~------~p~~--v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~  214 (287)
T 3nzj_K          143 LREKERISVAAASKILSNLVYQYKG------AGLS--MGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGV  214 (287)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHhhcC------CCce--EEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHH
Confidence            9999999999999999999999998      5876  6789999996578999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      ||+.|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++||++++++++++.
T Consensus       215 Le~~y~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l~~~ev~~~l~~~~e~~  279 (287)
T 3nzj_K          215 LDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEE  279 (287)
T ss_dssp             HHTSCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEeCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999998653

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=3.8e-46  Score=330.74  Aligned_cols=200  Identities=30%  Similarity=0.463  Sum_probs=192.6

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++.+|                                               
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~K-----------------------------------------------   33 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKK-----------------------------------------------   33 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccC-----------------------------------------------
Confidence            799999999999999999999999999999888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (202)
T 1j2q_H           34 ------------------------------------------IYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRE   71 (202)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC-eeeEccChHHHHHHHHh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAILDT  244 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~Le~  244 (312)
                      ++++++.+++++++++|.++.      |||+  +++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+.+++++||+
T Consensus        72 ~~~~~~~~a~~l~~~~~~~r~------rp~~--~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~  142 (202)
T 1j2q_H           72 RKPTVRAIATLTSNLLNSYRY------FPYL--VQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLED  142 (202)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhCC------CCce--EEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHh
Confidence            999999999999999999664      8988  5789999998 789999999999999999 99999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHh
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~  303 (312)
                      .|+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|+++++..++
T Consensus       143 ~~~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~~l~~~ei~~~~~~~~  201 (202)
T 1j2q_H          143 RFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFR  201 (202)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGTT
T ss_pred             hcCCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeEEeCHHHHHHHHHHhh
Confidence            99999999999999999999999999989999999999999999999999999998764

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=8.2e-46  Score=338.47  Aligned_cols=209  Identities=15%  Similarity=0.254  Sum_probs=198.1

Q ss_pred             cc-CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          3 IT-GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         3 ~~-g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      .+ |||+|||+++||||||+|+|++ +.++.++.++|                                           
T Consensus        33 ~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~K-------------------------------------------   68 (246)
T 1iru_A           33 NQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTH-------------------------------------------   68 (246)
T ss_dssp             HTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCS-------------------------------------------
T ss_pred             hcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCc-------------------------------------------
Confidence            35 9999999999999999999999 68998888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||..+|++.+.++++.+++.|+
T Consensus        69 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~  102 (246)
T 1iru_A           69 ----------------------------------------------LFKITENIGCVMTGMTADSRSQVQRARYEAANWK  102 (246)
T ss_dssp             ----------------------------------------------EEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------eEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  +++.|||+  +++||||||+.++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus       103 ~~~~~~~~~~~la~~l~~~~~~y~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~  178 (246)
T 1iru_A          103 YKYGYEIPVDMLCKRIADISQVYTQ--NAEMRPLG--CCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSF  178 (246)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHH--BSSBCCCS--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhc--CCCCCCcc--eEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHH
Confidence            9999999999999999999999998  77789988  5789999997578999999999999999999999999999999


Q ss_pred             HHhhCCC--CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHHhcCC
Q psy14210        242 LDTDYRP--DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       242 Le~~y~~--~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~~~~~  306 (312)
                      ||+.|++  +||+|||++++++||..+.+|| .++++++|++|+++|  +++++++|+++++..+++++
T Consensus       179 Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~~~~  246 (246)
T 1iru_A          179 LEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD  246 (246)
T ss_dssp             HHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHHTC-
T ss_pred             HHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhhccC
Confidence            9999999  9999999999999999999999 889999999999998  69999999999999997753

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=8.2e-46  Score=341.57  Aligned_cols=211  Identities=20%  Similarity=0.316  Sum_probs=200.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.++.++|                                           
T Consensus        28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~K-------------------------------------------   64 (261)
T 1iru_C           28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK-------------------------------------------   64 (261)
T ss_dssp             HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSS-------------------------------------------
T ss_pred             HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCcc-------------------------------------------
Confidence            3589999999999999999999999998888877888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||+.+|++.|+++++.+++.|+
T Consensus        65 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   98 (261)
T 1iru_C           65 ----------------------------------------------IYKLNEDMACSVAGITSDANVLTNELRLIAQRYL   98 (261)
T ss_dssp             ----------------------------------------------EEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  +++.|||+  +++||||||+.++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus        99 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rP~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  174 (261)
T 1iru_C           99 LQYQEPIPCEQLVTALCDIKQAYTQ--FGGKRPFG--VSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSM  174 (261)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTT--BSSCCCCC--EEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcc--ccCcCcce--EEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHH
Confidence            9999999999999999999999998  88899998  5789999996578999999999999999999999999999999


Q ss_pred             HHhhCCC-CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC----eEEeChhHHHHHHHHHhcC
Q psy14210        242 LDTDYRP-DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG----WQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       242 Le~~y~~-~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G----~~~l~~~eI~~~l~~~~~~  305 (312)
                      ||+.|++ +||+|||++++++||..+.++|..++++++|++|+++|    +++++++||++++..+.++
T Consensus       175 Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~~~  243 (261)
T 1iru_C          175 LKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEE  243 (261)
T ss_dssp             HHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHTT
T ss_pred             HHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHHhc
Confidence            9999999 99999999999999999999999999999999999987    7999999999999998543

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=6e-46  Score=331.99  Aligned_cols=202  Identities=39%  Similarity=0.690  Sum_probs=194.2

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++.+|                                               
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-----------------------------------------------   33 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKR-----------------------------------------------   33 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccc-----------------------------------------------
Confidence            799999999999999999999999999999888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (212)
T 1ryp_L           34 ------------------------------------------VIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK   71 (212)
T ss_dssp             ------------------------------------------EEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------eeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.+|+      .||+  +++|+||||++++|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus        72 ~~~~v~~la~~l~~~~~~~~~------~p~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~  143 (212)
T 1ryp_L           72 ERISVAAASKILSNLVYQYKG------AGLS--MGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN  143 (212)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTT------SCCC--BEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhCC------CCce--EEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhh
Confidence            999999999999999999998      4877  57899999964789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhc
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~  304 (312)
                      |+++||+|||++++++||..+.+||..++++++|++|+++|+++++++|++++++++++
T Consensus       144 ~~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~~~~~ei~~~~~~~~~  202 (212)
T 1ryp_L          144 YKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKE  202 (212)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEEECHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998753

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=4.2e-46  Score=337.63  Aligned_cols=205  Identities=19%  Similarity=0.319  Sum_probs=195.5

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|++ +.++.+++++|                                           
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~K-------------------------------------------   63 (233)
T 1iru_B           28 VAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHK-------------------------------------------   63 (233)
T ss_dssp             HHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCS-------------------------------------------
T ss_pred             HHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCe-------------------------------------------
Confidence            3579999999999999999999999 58888888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus        64 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   97 (233)
T 1iru_B           64 ----------------------------------------------VEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYY   97 (233)
T ss_dssp             ----------------------------------------------SEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.|++  +++.|||+  +++||||||+ .+|+||.+||+|++.++++.++|+|+.+++++
T Consensus        98 ~~~~~~~~v~~la~~l~~~~~~y~~--~~~~rP~~--v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~  172 (233)
T 1iru_B           98 LVYQEPIPTAQLVQRVASVMQEYTQ--SGGVRPFG--VSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTF  172 (233)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTT--SBTBCCCS--EEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcC--cCCCCCcE--EEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHH
Confidence            9999999999999999999999998  78899998  5789999996 78999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDR  302 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~  302 (312)
                      ||+.|+++||+|||++++++||..+.++| .++++++|++|+++|+++++++||++++..+
T Consensus       173 Le~~~~~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~~l~~~ei~~~~~~~  232 (233)
T 1iru_B          173 LEKRYNEDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFRRLTPTEVKDYLAAI  232 (233)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEEECCHHHHHHHHTTC
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEEECCHHHHHHHHHhc
Confidence            99999999999999999999999999999 6789999999999999999999999998654

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=1.3e-45  Score=336.69  Aligned_cols=210  Identities=21%  Similarity=0.325  Sum_probs=197.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-------------------------------------------   64 (244)
T 1ryp_C           28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK-------------------------------------------   64 (244)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSS-------------------------------------------
T ss_pred             HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCc-------------------------------------------
Confidence            3589999999999999999999999987776888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||..+|++.+.++++.+++.|+
T Consensus        65 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   98 (244)
T 1ryp_C           65 ----------------------------------------------LYKLNDKIAVAVAGLTADAEILINTARIHAQNYL   98 (244)
T ss_dssp             ----------------------------------------------EEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  ++++|||+  +++||||||++++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus        99 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  174 (244)
T 1ryp_C           99 KTYNEDIPVEILVRRLSDIKQGYTQ--HGGLRPFG--VSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTL  174 (244)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHH--BSSCCCCC--EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhc--cCCccceE--EEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHH
Confidence            9999999999999999999999998  78899988  5789999994478999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE--CCC----eEEeChhHHHHHHHHHhc
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN--GQG----WQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt--k~G----~~~l~~~eI~~~l~~~~~  304 (312)
                      ||+.|+++||+|||++++++||..+.+||..++++++|++|+  ++|    +++++++||++++..++.
T Consensus       175 Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~~  243 (244)
T 1ryp_C          175 LQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGI  243 (244)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHHTC
T ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHhhc
Confidence            999999999999999999999999999965679999999999  886    899999999999998753

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=8.3e-46  Score=335.72  Aligned_cols=202  Identities=20%  Similarity=0.358  Sum_probs=192.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|++++ ++.+++++|                                           
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~K-------------------------------------------   66 (233)
T 1yar_A           31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEK-------------------------------------------   66 (233)
T ss_dssp             HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCS-------------------------------------------
T ss_pred             HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCe-------------------------------------------
Confidence            358999999999999999999999995 788888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||..+|++.+.++++.+++.|+
T Consensus        67 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~  100 (233)
T 1yar_A           67 ----------------------------------------------IQLIDDYVAAVTSGLVADARVLVDFARISAQQEK  100 (233)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  +++.|||+  +++||||||+ ++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus       101 ~~~~~~~~v~~~a~~l~~~~~~~~~--~~~~rp~~--v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~  175 (233)
T 1yar_A          101 VTYGSLVNIENLVKRVADQMQQYTQ--YGGVRPYG--VSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSF  175 (233)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTT--BTTBCCCC--EEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcC--cCCcCcce--EEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHH
Confidence            9999999999999999999999999  88899988  5789999998 79999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIY  299 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l  299 (312)
                      ||+.|+++||+|||++++++||..+.++|. ++++++|++|+++| +++++++||++++
T Consensus       176 Le~~~~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~~~l  233 (233)
T 1yar_A          176 LEREYKENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVKKFL  233 (233)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence            999999999999999999999999999997 79999999999998 9999999998763

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=3.9e-45  Score=333.04  Aligned_cols=208  Identities=16%  Similarity=0.280  Sum_probs=196.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus        25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-------------------------------------------   61 (241)
T 1ryp_D           25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK-------------------------------------------   61 (241)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCS-------------------------------------------
T ss_pred             HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCc-------------------------------------------
Confidence            3589999999999999999999999998888878888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|+.+|++.+.++++.+++.|+
T Consensus        62 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   95 (241)
T 1ryp_D           62 ----------------------------------------------VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHR   95 (241)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecC-CCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEI-LGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~-~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      ++++++++++.+|+++++++|.+++  ++++|||+  +++||||||+. ++|+||.+||+|++.++++.|+|+|+.++++
T Consensus        96 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rP~~--v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~  171 (241)
T 1ryp_D           96 LTLEDPVTVEYLTRYVAGVQQRYTQ--SGGVRPFG--VSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVRE  171 (241)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTS--STTBCCCS--EEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHcc--CCCCCCcc--eeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHH
Confidence            9999999999999999999999998  78889988  57899999975 6899999999999999999999999999999


Q ss_pred             HHHhhC---CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhcC
Q psy14210        241 ILDTDY---RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       241 ~Le~~y---~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~~  305 (312)
                      +||+.|   +++||+|||++++++||..+.+   .++++++|++|+++| +++++++|+++++..++++
T Consensus       172 ~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~~~  237 (241)
T 1ryp_D          172 FLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQE  237 (241)
T ss_dssp             HHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHTHH
T ss_pred             HHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHhhh
Confidence            999999   9999999999999999999985   678999999999985 9999999999999988654

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=1.3e-45  Score=336.22  Aligned_cols=210  Identities=21%  Similarity=0.306  Sum_probs=197.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++ ++.++|                                           
T Consensus        23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~K-------------------------------------------   58 (242)
T 1ryp_E           23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEK-------------------------------------------   58 (242)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCC-------------------------------------------
T ss_pred             HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCc-------------------------------------------
Confidence            358999999999999999999999998766 777888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||+.+|++.++++++.+++.|+
T Consensus        59 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   92 (242)
T 1ryp_E           59 ----------------------------------------------IVEIDRHIGCAMSGLTADARSMIEHARTAAVTHN   92 (242)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------eEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCC------CCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccCh
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSS------KIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGA  235 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~------~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs  235 (312)
                      ++++++++++.+++++++++|.+++  +++      .|||+  +++||||||+.++|+||.+||+|++.+++++|+|+|+
T Consensus        93 ~~~~~~~~v~~la~~l~~~~~~~t~--~~~~~~~l~~RP~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs  168 (242)
T 1ryp_E           93 LYYDEDINVESLTQSVCDLALRFGE--GASGEERLMSRPFG--VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGS  168 (242)
T ss_dssp             HHHSSCCCHHHHHHHHHTTTTCCBS--SCTTSCCCBSSCCS--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcc--ccCcccccccCcce--EEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCC
Confidence            9999999999999999999999998  777      89998  5789999995478999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhcCC
Q psy14210        236 EYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       236 ~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~~~  306 (312)
                      .+++++||+.|+++||+|||++++++||..+.+| ..++++++|++|+++| +++++++||+++++.++++.
T Consensus       169 ~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~~~  239 (242)
T 1ryp_E          169 EGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKE  239 (242)
T ss_dssp             HHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999998 5689999999999998 68999999999999887654

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=7.4e-46  Score=336.19  Aligned_cols=214  Identities=18%  Similarity=0.211  Sum_probs=201.6

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.++.++|                                           
T Consensus         5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-------------------------------------------   41 (233)
T 1ryp_N            5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER-------------------------------------------   41 (233)
T ss_dssp             CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred             ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCc-------------------------------------------
Confidence            5689999999999999999999999999999999899                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|..+|++.|.++++.+++.|+
T Consensus        42 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   75 (233)
T 1ryp_N           42 ----------------------------------------------LIPVGDNTVVGISGDISDMQHIERLLKDLVTENA   75 (233)
T ss_dssp             ----------------------------------------------EEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------eEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHh
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             h-----hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChH
Q psy14210        162 C-----KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE  236 (312)
Q Consensus       162 ~-----~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~  236 (312)
                      +     +++++++++.+|+++++++|.++.    +.|||+  +++||||||+.++|+||.+||+|++.++++.++|+|+.
T Consensus        76 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r~----~~~P~~--v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~  149 (233)
T 1ryp_N           76 YDNPLADAEEALEPSYIFEYLATVMYQRRS----KMNPLW--NAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH  149 (233)
T ss_dssp             TTCTTTTTTTSCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred             hccchhhcCCCCCHHHHHHHHHHHHHHhcC----CCCCce--EEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHH
Confidence            9     899999999999999999998765    579988  57899999985589999999999999999999999999


Q ss_pred             HHHHHHHhhCCC-----CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCCCCCC
Q psy14210        237 YAQAILDTDYRP-----DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAPPGGG  310 (312)
Q Consensus       237 ~a~~~Le~~y~~-----~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~~~~~  310 (312)
                      +++++||+.|++     +||+|||++++++||..+.+||..++++++|++|+++ |+++++++||+++-|++++-..|-+
T Consensus       150 ~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~~w~~~~~~~~~~  229 (233)
T 1ryp_N          150 MANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG  229 (233)
T ss_dssp             HHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCSSS
T ss_pred             HHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccccchhhhhccCcC
Confidence            999999999999     9999999999999999999999999999999999999 9999999999999667877766543

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=9.1e-45  Score=329.68  Aligned_cols=204  Identities=27%  Similarity=0.317  Sum_probs=192.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++++|                                               
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~K-----------------------------------------------   33 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEK-----------------------------------------------   33 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCc-----------------------------------------------
Confidence            799999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|+++++|++||+.+|++.|+++++.+++.|+++++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (235)
T 1q5q_H           34 ------------------------------------------VYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG   71 (235)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCC-----CeEEEEcCCceEEec--CeeeEccChHHH
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-----PQLYMLDNTGLLIEG--TKFCVGSGAEYA  238 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~g-----p~Ly~iDpsGs~~e~--~~~AiGsGs~~a  238 (312)
                      ++++++.+|+++++++|.+++  ++ +|||+  +++||||||+.++     |+||++||+|+++++  ++.|+|+|+.++
T Consensus        72 ~~~~v~~la~~l~~~~~~~~~--~~-~rp~~--v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a  146 (235)
T 1q5q_H           72 VPLTFDGKANRLASMVRGNLG--AA-MQGLA--VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFA  146 (235)
T ss_dssp             SCCCHHHHHHHHHHHHHTTHH--HH-TTTCC--EEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH--hh-hcccc--eEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHH
Confidence            999999999999999999887  43 79988  5689999998546     999999999999999  899999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc--E-----EEEEEECCCeEEeChhHHHHHHHHHh
Q psy14210        239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC--V-----RLYKINGQGWQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~--i-----eI~iItk~G~~~l~~~eI~~~l~~~~  303 (312)
                      +++||+.|+++||+|||++++++||..++++|..+++.  +     +|++|+++|+++++++|+++++..++
T Consensus       147 ~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~l~~~ei~~~~~~~~  218 (235)
T 1q5q_H          147 KSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIV  218 (235)
T ss_dssp             HHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEEeCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887753  2     99999999999999999999998875

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=3.9e-45  Score=334.60  Aligned_cols=209  Identities=16%  Similarity=0.320  Sum_probs=196.5

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++| ++.+++++|                                           
T Consensus        26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~K-------------------------------------------   61 (248)
T 1iru_D           26 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRK-------------------------------------------   61 (248)
T ss_dssp             HHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCS-------------------------------------------
T ss_pred             HHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCc-------------------------------------------
Confidence            357999999999999999999999997 788888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|+.+|++.+.++++.+++.|+
T Consensus        62 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   95 (248)
T 1iru_D           62 ----------------------------------------------ICALDDNVCMAFAGLTADARIVINRARVECQSHR   95 (248)
T ss_dssp             ----------------------------------------------EEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  +++.|||+  +++||||||++++|+||.+||+|++.++++.++|+|+.+++++
T Consensus        96 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~  171 (248)
T 1iru_D           96 LTVEDPVTVEYITRYIASLKQRYTQ--SNGRRPFG--ISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREF  171 (248)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHTTS--BTTBCCCC--EEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhc--cCCccccc--EEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHH
Confidence            9999999999999999999999999  78899988  5789999995479999999999999999999999999999999


Q ss_pred             HHhhCCCCC--CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHHHhcCCC
Q psy14210        242 LDTDYRPDL--SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYNDRKEAPP  307 (312)
Q Consensus       242 Le~~y~~~m--s~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~~~~~~~  307 (312)
                      ||+.|+++|  |+|||++++++||..+.+   .++++++|++|+++| +++++++||++++..++++..
T Consensus       172 Le~~~~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~~  237 (248)
T 1iru_D          172 LEKNYTDEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKE  237 (248)
T ss_dssp             HTTTCCSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTTT
T ss_pred             HHHhhcccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcch
Confidence            999999999  999999999999999886   468999999999998 999999999999998865543

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=8.4e-45  Score=333.59  Aligned_cols=208  Identities=16%  Similarity=0.207  Sum_probs=195.5

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++. +.++|                                           
T Consensus        30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~K-------------------------------------------   65 (254)
T 1iru_G           30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKR-------------------------------------------   65 (254)
T ss_dssp             HHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCC-------------------------------------------
T ss_pred             HhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCc-------------------------------------------
Confidence            3579999999999999999999999987774 67777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|..+|++.|+++++.+++.|+
T Consensus        66 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   99 (254)
T 1iru_G           66 ----------------------------------------------LFNVDRHVGMAVAGLLADARSLADIAREEASNFR   99 (254)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEECCCEEEEEecChHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  +++.|||+  +++||||||+.++|+||++||+|++.++++.|+|+|+.+++++
T Consensus       100 ~~~~~~~~v~~la~~l~~~~~~~~~--~~~~rP~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  175 (254)
T 1iru_G          100 SNFGYNIPLKHLADRVAMYVHAYTL--YSAVRPFG--CSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTE  175 (254)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTS--BSSBCCCS--EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHhcc--ccccccce--EEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHH
Confidence            9999999999999999999999998  78899988  5789999995478999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC--C-eEEeChhHHHHHHHHHh
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ--G-WQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~--G-~~~l~~~eI~~~l~~~~  303 (312)
                      ||+.|+++||+|||++++++||+.+.++|..++.+++|++|+++  | +++++++|+++++...+
T Consensus       176 Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~  240 (254)
T 1iru_G          176 IEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK  240 (254)
T ss_dssp             HTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence            99999999999999999999999998888768889999999987  6 99999999999998764

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=2e-45  Score=330.10  Aligned_cols=209  Identities=20%  Similarity=0.223  Sum_probs=196.5

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus         5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-------------------------------------------   41 (219)
T 1iru_N            5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR-------------------------------------------   41 (219)
T ss_dssp             CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCC-------------------------------------------
T ss_pred             ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCc-------------------------------------------
Confidence            5689999999999999999999999999999999888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|..+|++.|.++++.+++.|+
T Consensus        42 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   75 (219)
T 1iru_N           42 ----------------------------------------------IMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE   75 (219)
T ss_dssp             ----------------------------------------------EEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------eEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             h-hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        162 C-KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       162 ~-~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      + +++++++++.+|+++++++|.++.    +.|||+  +++||||||+ ++|+||.+||+|++.++++.++|+|+.++++
T Consensus        76 ~~~~~~~~~v~~la~~l~~~ly~~r~----~~~P~~--v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~  148 (219)
T 1iru_N           76 LLGDGHSYSPRAIHSWLTRAMYSRRS----KMNPLW--NTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQP  148 (219)
T ss_dssp             HHCSSCCCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHH
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHHhcc----cCCCce--EEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHH
Confidence            8 999999999999999999998764    579988  5789999998 6999999999999999999999999999999


Q ss_pred             HHHhhCCC--CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCCC
Q psy14210        241 ILDTDYRP--DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAPP  307 (312)
Q Consensus       241 ~Le~~y~~--~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~~  307 (312)
                      +||+.|++  +||+|||++++++||..+.+||..++++++|++|+++|++.++++|++.. |++++...
T Consensus       149 ~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~i~~~-~~~~~~~~  216 (219)
T 1iru_N          149 LLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTETN-WDIAHMIS  216 (219)
T ss_dssp             HHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCCCC-CGGGGCSC
T ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcCCeeccch-hhHHHhhc
Confidence            99999999  99999999999999999999999999999999999999999999998887 45655443

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=4.2e-45  Score=337.36  Aligned_cols=210  Identities=17%  Similarity=0.277  Sum_probs=195.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++| +.  +..+|                                           
T Consensus        29 v~~Gtt~vgi~~~dgVVlaaD~r~~~g-l~--~~~~K-------------------------------------------   62 (263)
T 1iru_F           29 VKQGSATVGLKSKTHAVLVALKRAQSE-LA--AHQKK-------------------------------------------   62 (263)
T ss_dssp             HHHSCCEEEEECSSEEEEEEECCCSST-TB--CCCCC-------------------------------------------
T ss_pred             HHcCCcEEEEEeCCEEEEEEecccccc-cc--cchhc-------------------------------------------
Confidence            357999999999999999999999997 32  34455                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||+.+|++.|.++++.+++.|+
T Consensus        63 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   96 (263)
T 1iru_F           63 ----------------------------------------------ILHVDNHIGISIAGLTADARLLCNFMRQECLDSR   96 (263)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  +++.|||+  +++||||||+ ++|+||++||+|++++++++|+|+|+.+++++
T Consensus        97 ~~~~~~i~v~~la~~l~~~l~~~t~--~~~~RP~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  171 (263)
T 1iru_F           97 FVFDRPLPVSRLVSLIGSKTQIPTQ--RYGRRPYG--VGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTY  171 (263)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHH--BTTCCCCC--EEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHH
T ss_pred             HHcCCCCCHHHHHHHHHHHHHHhhc--ccccccce--EEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHH
Confidence            9999999999999999999999998  77899988  5789999998 78999999999999999999999999999999


Q ss_pred             HHhhCCC--CCCHHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCCCC
Q psy14210        242 LDTDYRP--DLSEEEAYALATSAIYHACRRD-IHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAPPG  308 (312)
Q Consensus       242 Le~~y~~--~ms~eEAi~la~kaL~~a~~rD-~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~~~  308 (312)
                      ||+.|++  +||+|||++++++||..+++|| ..++++++|++|+++ ++++++++||++++..+++.+++
T Consensus       172 Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~~~~~~  242 (263)
T 1iru_F          172 LERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLEERPQR  242 (263)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCCCCCC-
T ss_pred             HHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhccccc
Confidence            9999998  9999999999999999999999 478999999999998 79999999999999999766653

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=4e-44  Score=327.43  Aligned_cols=206  Identities=21%  Similarity=0.343  Sum_probs=194.2

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|++++ ++.+++.+|                                           
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~K-------------------------------------------   66 (246)
T 1j2p_A           31 VKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEK-------------------------------------------   66 (246)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCS-------------------------------------------
T ss_pred             HHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCc-------------------------------------------
Confidence            357999999999999999999999995 666777778                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus        67 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~  100 (246)
T 1j2p_A           67 ----------------------------------------------IYKIDEHICAATSGLVADARVLIDRARIEAQINR  100 (246)
T ss_dssp             ----------------------------------------------EEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  +++.|||+  +++||||||  ++|+||.+||+|++.+++++|+|+|+.+++++
T Consensus       101 ~~~~~~~~v~~la~~l~~~~~~y~~--~~~~rp~~--v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~  174 (246)
T 1j2p_A          101 LTYDIPITVKELAKKICDFKQQYTQ--YGGVRPFG--VSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEF  174 (246)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHTTS--BTTBCCCC--EEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhc--ccCccccc--EEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHH
Confidence            9999999999999999999999998  78899988  578999999  68999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE-C-CCeEEeChhHHHHHHHHHhc
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN-G-QGWQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt-k-~G~~~l~~~eI~~~l~~~~~  304 (312)
                      ||+.|+++||+|||++++++||..+.++ ..++++++|++|+ + +|+++++++|+++++..+.+
T Consensus       175 Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~~  238 (246)
T 1j2p_A          175 FEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANE  238 (246)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 6789999999999 6 58999999999999988753

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=1.1e-44  Score=330.04  Aligned_cols=204  Identities=21%  Similarity=0.362  Sum_probs=192.9

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++ +++++|                                           
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~K-------------------------------------------   66 (241)
T 1iru_E           31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEK-------------------------------------------   66 (241)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCS-------------------------------------------
T ss_pred             HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccce-------------------------------------------
Confidence            357999999999999999999999998776 778888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||..+|++.+.++++.+++.|+
T Consensus        67 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~  100 (241)
T 1iru_E           67 ----------------------------------------------IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW  100 (241)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCC-----CCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSS-----KIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE  236 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~-----~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~  236 (312)
                      ++++++++++.+|+++++++|.+++  +++     .|||+  +++||||||+ ++|+||.+||+|++.+++++|+|+|+.
T Consensus       101 ~~~~~~~~v~~~a~~l~~~~~~y~~--~~~~~~l~~rp~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~  175 (241)
T 1iru_E          101 FTYNETMTVESVTQAVSNLALQFGE--EDADPGAMSRPFG--VALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASE  175 (241)
T ss_dssp             HHHSSCCCHHHHHHHHHTTTTCBCS--TTCCSSCBSSCCC--EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhc--cccccccccccce--EEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcH
Confidence            9999999999999999999999988  777     89988  5789999995 789999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhHHHHHHHH
Q psy14210        237 YAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRDVKDIYND  301 (312)
Q Consensus       237 ~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~eI~~~l~~  301 (312)
                      +++++||+.|+++||+|||++++++||..+.++ ..++++++|++|+++| +++++++|+++++.+
T Consensus       176 ~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~  240 (241)
T 1iru_E          176 GAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEELEEVIKD  240 (241)
T ss_dssp             HHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHHHHHHTT
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHHHHHHHh
Confidence            999999999999999999999999999999998 6789999999999997 789999999999864

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=2.7e-44  Score=336.84  Aligned_cols=211  Identities=27%  Similarity=0.302  Sum_probs=197.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus        62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~K-------------------------------------------   98 (294)
T 1q5r_H           62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEA-------------------------------------------   98 (294)
T ss_dssp             SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCC-------------------------------------------
T ss_pred             HhcCceEEEEEECCEEEEEEcCccccCceeecCCcce-------------------------------------------
Confidence            4689999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|+.+|++.|+++++.+++.|+
T Consensus        99 ----------------------------------------------I~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~  132 (294)
T 1q5r_H           99 ----------------------------------------------VYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYE  132 (294)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhh
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCC-----CeEEEEcCCceEEec--CeeeEccC
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-----PQLYMLDNTGLLIEG--TKFCVGSG  234 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~g-----p~Ly~iDpsGs~~e~--~~~AiGsG  234 (312)
                      ++++++++++.++++|++++|.+++  ++ +|||+  +++||||||+..+     |+||++||+|+++++  ++.++|+|
T Consensus       133 ~~~g~~isv~~la~~la~~l~~~~~--~~-~rp~~--v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsg  207 (294)
T 1q5r_H          133 KIEGVPLTFDGKANRLASMVRGNLG--AA-MQGLA--VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSG  207 (294)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHH--HH-TTTTC--EEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTT
T ss_pred             HhhCCCCCHHHHHHHHHHHHHHHHh--hh-cCCcc--eEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecC
Confidence            9999999999999999999999887  44 79988  5689999998546     999999999999999  89999999


Q ss_pred             hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc--E-----EEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210        235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC--V-----RLYKINGQGWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       235 s~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~--i-----eI~iItk~G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      +.+++++||+.|+++||+|||++++++||..++++|..+++.  +     +|++|+++|+++++++|++++++.+.++.
T Consensus       208 s~~a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~l~~~ei~~~l~~i~~~~  286 (294)
T 1q5r_H          208 SLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAER  286 (294)
T ss_dssp             HHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHCC--
T ss_pred             cHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEEcCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999887654  6     99999999999999999999999986554

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=4.6e-45  Score=337.36  Aligned_cols=208  Identities=24%  Similarity=0.397  Sum_probs=195.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|++++ ++.++.++|                                           
T Consensus        35 v~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~K-------------------------------------------   70 (264)
T 3h4p_A           35 VRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEK-------------------------------------------   70 (264)
T ss_dssp             HHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCC-------------------------------------------
T ss_pred             HhcCCcEEEEEECCEEEEEEecCccCC-ccccCcccc-------------------------------------------
Confidence            358999999999999999999999995 788888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|+.+|++.|+++++.+++.|+
T Consensus        71 ----------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~  104 (264)
T 3h4p_A           71 ----------------------------------------------IFQIDDHVAAATSGLVADARVLIDRARLEAQIYR  104 (264)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHH
T ss_pred             ----------------------------------------------EEEecCcEEEEeccchHHHHHHHHHHHHHHHhhH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  ++++|||+  +++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++
T Consensus       105 ~~~~~~i~v~~la~~l~~~~~~yt~--~~~~rP~~--v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~  179 (264)
T 3h4p_A          105 LTYGEEISIEMLAKKICDIKQAYTQ--HGGVRPFG--VSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMEL  179 (264)
T ss_dssp             HTTCSCCCHHHHHHHHHHHHHHTTS--BSSCCCCS--EEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTT
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHHhh--ccCCCCee--EEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHH
Confidence            9999999999999999999999998  88899998  5689999997 78999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC--CeEEeChhHHHHHHHHHhcCC
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ--GWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~--G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      ||+.|+++||+|||++++++||..++++  .++++++|++|+++  ++++++++||++++..++++.
T Consensus       180 Le~~~~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~~~  244 (264)
T 3h4p_A          180 LEKEYRDDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKKL  244 (264)
T ss_dssp             HHHHCCTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTTSS
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999976  68999999999975  699999999999998876443

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=6.5e-44  Score=325.86  Aligned_cols=207  Identities=23%  Similarity=0.269  Sum_probs=194.3

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.++ .+|                                           
T Consensus        27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~K-------------------------------------------   62 (244)
T 1ryp_G           27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVK-------------------------------------------   62 (244)
T ss_dssp             HHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCC-------------------------------------------
T ss_pred             HHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCc-------------------------------------------
Confidence            357999999999999999999999998777654 367                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||+.+|++.+.++++.+++.|+
T Consensus        63 ----------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   96 (244)
T 1ryp_G           63 ----------------------------------------------IQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK   96 (244)
T ss_dssp             ----------------------------------------------CEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------eEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  +++.|||+  +++||||||+ ++|+||.+||+|+++++++.|+|+|+.+++++
T Consensus        97 ~~~~~~~~v~~la~~l~~~~~~~t~--~~~~rp~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~  171 (244)
T 1ryp_G           97 KLYKTPIPIPAFADRLGQYVQAHTL--YNSVRPFG--VSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE  171 (244)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTS--CTTBCCCC--EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhc--ccCccCce--EEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHH
Confidence            9999999999999999999999999  88889988  5789999997 78999999999999999999999999999999


Q ss_pred             HHhh---CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC---CCeEEeChhHHHHHHHHHh
Q psy14210        242 LDTD---YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING---QGWQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       242 Le~~---y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk---~G~~~l~~~eI~~~l~~~~  303 (312)
                      ||+.   |+++||+|||++++++||..+.++|..++++++|++|++   +|++++.++|+.+..++.+
T Consensus       172 Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~  239 (244)
T 1ryp_G          172 LEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFA  239 (244)
T ss_dssp             HHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHH
T ss_pred             HHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHHH
Confidence            9997   999999999999999999999999998999999999998   8999998888888877664

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=1.4e-44  Score=321.38  Aligned_cols=202  Identities=27%  Similarity=0.431  Sum_probs=189.6

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++.+|                                               
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-----------------------------------------------   33 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK-----------------------------------------------   33 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCc-----------------------------------------------
Confidence            799999999999999999999999999998888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|++||+.+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (205)
T 1iru_H           34 ------------------------------------------LTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELN   71 (205)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------------eEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.+|+       ||+  +++|+||||+.++|+||.+||+|++.++++.++|+|+.+++++||+.
T Consensus        72 ~~~~v~~la~~l~~~~~~~~~-------p~~--~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~  142 (205)
T 1iru_H           72 EPPLVHTAASLFKEMCYRYRE-------DLM--AGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDAT  142 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTT-------TCC--EEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCc-------Ccc--EEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHh
Confidence            999999999999999998875       777  57899999976789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCe--EEeChhHHHHHHHHHhcCCC
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW--QQVLSRDVKDIYNDRKEAPP  307 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~--~~l~~~eI~~~l~~~~~~~~  307 (312)
                      |+++||+|||++++++||..+.+||..++++++|++|+++|+  +.++++||++++.+  .-||
T Consensus       143 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~~--~~~~  204 (205)
T 1iru_H          143 YREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAVA--TLPP  204 (205)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCCC--CC--
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHhh--cCCC
Confidence            999999999999999999999999999999999999999985  57899999888764  4444

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=8.7e-44  Score=314.44  Aligned_cols=192  Identities=23%  Similarity=0.308  Sum_probs=183.0

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++.+|                                               
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-----------------------------------------------   34 (198)
T 1ryp_K            2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDK-----------------------------------------------   34 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             ceEEEEEECCEEEEEECCCcccCCEEEecCCCc-----------------------------------------------
Confidence            899999999999999999999999988888888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|++|+++++||+.+|++.+.++++.+++.|+++++
T Consensus        35 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   72 (198)
T 1ryp_K           35 ------------------------------------------TRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIRED   72 (198)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------------eEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEec-CCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDE-ILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT  244 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~-~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~  244 (312)
                      ++++++.+++++++++|.+++    .++||+  +++|+||||+ +++|+||.+||+|++.++++.|+|+|+.+++++||+
T Consensus        73 ~~~~v~~la~~l~~~l~~~~~----~r~p~~--v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~  146 (198)
T 1ryp_K           73 YELSPQAVSSFVRQELAKSIR----SRRPYQ--VNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDH  146 (198)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTT----SSSCCC--EEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhcc----cCCCce--EEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHh
Confidence            999999999999999999886    235988  5789999996 478999999999999999999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeCh
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS  292 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~  292 (312)
                      .|+++||+|||++++++||..+.+||..++++++|++|+++|++++++
T Consensus       147 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~  194 (198)
T 1ryp_K          147 HYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDD  194 (198)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECC
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCCCEEEecc
Confidence            999999999999999999999999999999999999999999998876

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=1.1e-43  Score=325.18  Aligned_cols=205  Identities=20%  Similarity=0.344  Sum_probs=192.9

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|++ +.++.+++++|                                           
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~K-------------------------------------------   63 (250)
T 1ryp_B           28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSK-------------------------------------------   63 (250)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCS-------------------------------------------
T ss_pred             HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCc-------------------------------------------
Confidence            3589999999999999999999998 78999998888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhh-h
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKG-Y  160 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~-~  160 (312)
                                                                    |++|++|++|++||..+|++.+.++++.+++. |
T Consensus        64 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   97 (250)
T 1ryp_B           64 ----------------------------------------------VSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSY   97 (250)
T ss_dssp             ----------------------------------------------SEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred             ----------------------------------------------eEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHH
Confidence                                                          89999999999999999999999999999999 9


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      ++.++.+++++.+++.++++++.+++  +.+.|||+  +++||||||+.++|+||.+||+|++.++++.|+|+|+.++++
T Consensus        98 ~~~~~~~~~~~~l~~~~a~~~~~~~~--~~~~rp~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~  173 (250)
T 1ryp_B           98 KRIYGEYPPTKLLVSEVAKIMQEATQ--SGGVRPFG--VSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKT  173 (250)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHTTT--SBTBCCCC--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHh--cCCcccce--EEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHH
Confidence            99999999999999999999999998  77889988  578999999756899999999999999999999999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC----------------CeEEeChhHHHHHHHH
Q psy14210        241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ----------------GWQQVLSRDVKDIYND  301 (312)
Q Consensus       241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~----------------G~~~l~~~eI~~~l~~  301 (312)
                      +||+.|+++||+|||++++++||..+++++ .++++++|++|+++                ++++++++||++++..
T Consensus       174 ~Le~~~~~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~  249 (250)
T 1ryp_B          174 FLEKRWNDELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEA  249 (250)
T ss_dssp             HHHHHCCTTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTT
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHh
Confidence            999999999999999999999999999886 47999999999986                3899999999999864

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=1.1e-44  Score=334.97  Aligned_cols=213  Identities=17%  Similarity=0.201  Sum_probs=200.0

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.++.++|                                           
T Consensus        38 v~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~K-------------------------------------------   74 (266)
T 1g0u_M           38 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER-------------------------------------------   74 (266)
T ss_dssp             CEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCC-------------------------------------------
T ss_pred             cccCceEEEEEECCEEEEEEcCCcccCceeecCCcCc-------------------------------------------
Confidence            4689999999999999999999999999999999888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|..+|++.|+++++.+++.|+
T Consensus        75 ----------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~  108 (266)
T 1g0u_M           75 ----------------------------------------------LIPVGDNTVVGISGDISDMQHIERLLKDLVTENA  108 (266)
T ss_dssp             ----------------------------------------------EEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhh
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             h-----hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChH
Q psy14210        162 C-----KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE  236 (312)
Q Consensus       162 ~-----~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~  236 (312)
                      +     +++++++++.+|+++++++|.++.    +.|||+  +++||||||+.++|+||.+||+|++.++++.++|+|+.
T Consensus       109 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r~----~~~P~~--v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~  182 (266)
T 1g0u_M          109 YDNPLADAEEALEPSYIFEYLATVMYQRRS----KMNPLW--NAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH  182 (266)
T ss_dssp             TTCTTTTTTTSCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred             hccchhhcCCCCCHHHHHHHHHHHHHHhcc----CCCCce--EEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHH
Confidence            8     899999999999999999998765    579988  57899999985589999999999999999999999999


Q ss_pred             HHHHHHHhhCCC-----CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCCCCC
Q psy14210        237 YAQAILDTDYRP-----DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAPPGG  309 (312)
Q Consensus       237 ~a~~~Le~~y~~-----~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~~~~  309 (312)
                      +++++||+.|++     +||+|||++++++||..+.+||..++++++|++|+++ |+++++++||+++-|++++-..|-
T Consensus       183 ~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~~w~~~~~~~~~  261 (266)
T 1g0u_M          183 MANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGY  261 (266)
T ss_dssp             THHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCCCCGGGGGCCSS
T ss_pred             HHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhhhhhHHhhhcCc
Confidence            999999999999     9999999999999999999999999999999999999 999999999999966777655543

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=2.6e-43  Score=314.90  Aligned_cols=192  Identities=21%  Similarity=0.266  Sum_probs=181.4

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.++..+|                                           
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-------------------------------------------   42 (213)
T 1iru_M            6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPK-------------------------------------------   42 (213)
T ss_dssp             CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred             cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCc-------------------------------------------
Confidence            5689999999999999999999999999998888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||+.+|++.+.++++.+++.|+
T Consensus        43 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   76 (213)
T 1iru_M           43 ----------------------------------------------CYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYK   76 (213)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.++      .|||+  +++||||||++++|+||.+||+|++.++++.|+|+|+.+++++
T Consensus        77 ~~~~~~~~v~~la~~l~~~~y~~r------~~P~~--v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~  148 (213)
T 1iru_M           77 HSNNKAMTTGAIAAMLSTILYSRR------FFPYY--VYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPL  148 (213)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTT------TSCCC--EEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHH
T ss_pred             HhcCCCCCHHHHHHHHHHHHHhhC------CCCce--EEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHH
Confidence            999999999999999999997654      38988  5789999997556999999999999999999999999999999


Q ss_pred             HHhh---------CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        242 LDTD---------YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       242 Le~~---------y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      ||+.         |+++||+|||++++++||..+.++|..++++++|++|+++|++..
T Consensus       149 Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~  206 (213)
T 1iru_M          149 LDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE  206 (213)
T ss_dssp             HHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred             HhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEE
Confidence            9999         889999999999999999999999999999999999999998653

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=4.3e-44  Score=324.60  Aligned_cols=200  Identities=20%  Similarity=0.275  Sum_probs=186.7

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++| +.  +..+|                                           
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~--~~~~K-------------------------------------------   61 (233)
T 1ryp_F           28 IKQGSVTVGLRSNTHAVLVALKRNADE-LS--SYQKK-------------------------------------------   61 (233)
T ss_dssp             HHTSCCEEEEECSSEEEEEEECCCSST-TB--CCCCC-------------------------------------------
T ss_pred             HHcCCCEEEEEcCCEEEEEEEeccccc-cc--cccCc-------------------------------------------
Confidence            357999999999999999999999997 22  34455                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||..+|++.+.++++.+++.|+
T Consensus        62 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   95 (233)
T 1ryp_F           62 ----------------------------------------------IIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSS   95 (233)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  +++.|||+  +++||||||+ .+|+||++||+|++.++++.|+|+|+.+++++
T Consensus        96 ~~~~~~~~v~~la~~l~~~~~~~t~--~~~~rp~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~  170 (233)
T 1ryp_F           96 LVFNRKLAVERAGHLLCDKAQKNTQ--SYGGRPYG--VGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTY  170 (233)
T ss_dssp             HHHSCCCCHHHHHHHHHHHHHHHHH--BTTCCCCC--EEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhc--ccCCcCcc--eEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHH
Confidence            9999999999999999999999998  77889988  5789999998 78999999999999999999999999999999


Q ss_pred             HHhhCCC--CC--CHHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEEECC-CeEEeChhHHHHHH
Q psy14210        242 LDTDYRP--DL--SEEEAYALATSAIYHACRRD-IHSGGCVRLYKINGQ-GWQQVLSRDVKDIY  299 (312)
Q Consensus       242 Le~~y~~--~m--s~eEAi~la~kaL~~a~~rD-~~sg~~ieI~iItk~-G~~~l~~~eI~~~l  299 (312)
                      ||+.|++  +|  |+|||++++++||..++ +| ..++++++|++|+++ |+++++++||++++
T Consensus       171 Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l  233 (233)
T 1ryp_F          171 LERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI  233 (233)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred             HHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence            9999998  99  99999999999999999 77 578999999999998 79999999998763

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=2e-43  Score=321.01  Aligned_cols=194  Identities=25%  Similarity=0.313  Sum_probs=185.2

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++++|                                               
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~K-----------------------------------------------   33 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEK-----------------------------------------------   33 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCcccc-----------------------------------------------
Confidence            899999999999999999999999999998888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (234)
T 3unf_H           34 ------------------------------------------IHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTG   71 (234)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------------------------EEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.++       +||+  +++||||||+ +||+||++||+|++.++++.|+|+|+.+++++||+.
T Consensus        72 ~~~~v~~la~~l~~~l~~~~-------~p~~--v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~  141 (234)
T 3unf_H           72 REPRVATVTRILRQTLFRYQ-------GHVG--ASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDR  141 (234)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcC-------CCcc--EEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhc
Confidence            99999999999999999753       5877  5789999998 789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHH
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDI  298 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~  298 (312)
                      |+++||+|||++++++||..++++|..++++++|++|+++|++++++++++.-
T Consensus       142 ~~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~~~~i~~~  194 (234)
T 3unf_H          142 FQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKLQRALSTPTE  194 (234)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEEEEEEECCCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEEeCceecccc
Confidence            99999999999999999999999999999999999999999999998887653

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=4.5e-43  Score=311.84  Aligned_cols=190  Identities=23%  Similarity=0.379  Sum_probs=181.1

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++.+|                                           
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-------------------------------------------   42 (205)
T 1ryp_H            6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDK-------------------------------------------   42 (205)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCC-------------------------------------------
T ss_pred             CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCc-------------------------------------------
Confidence            5789999999999999999999999999999988888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||..+|++.+.++++.+++.|+
T Consensus        43 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   76 (205)
T 1ryp_H           43 ----------------------------------------------LTRVHDKIWCCRSGSAADTQAIADIVQYHLELYT   76 (205)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------eEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      +++++ ++++.+|+++++++|.+|+      + |+  +++|+||||+..+|+||.+||+|++.++++.++|+|+.+++++
T Consensus        77 ~~~~~-~~v~~la~~l~~~~~~~~~------~-~~--~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~  146 (205)
T 1ryp_H           77 SQYGT-PSTETAASVFKELCYENKD------N-LT--AGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGY  146 (205)
T ss_dssp             HHHSS-CCHHHHHHHHHHHHHHTTT------T-CC--EEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHH
T ss_pred             HHhCC-CCHHHHHHHHHHHHHhhhc------C-ce--EEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHH
Confidence            99999 9999999999999999987      2 55  6789999997568999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      ||+.|+++||+|||++++++||..+.+||..++++++|++|+++|++..
T Consensus       147 Le~~~~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~  195 (205)
T 1ryp_H          147 CDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERL  195 (205)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEE
T ss_pred             HHhccCCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEE
Confidence            9999999999999999999999999999999999999999999997654

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=8.5e-43  Score=314.05  Aligned_cols=192  Identities=23%  Similarity=0.230  Sum_probs=181.6

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~K-------------------------------------------   42 (222)
T 1ryp_M            6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPK-------------------------------------------   42 (222)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred             ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCc-------------------------------------------
Confidence            5689999999999999999999999999999999888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|..+|++.|.++++.+++.|+
T Consensus        43 ----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   76 (222)
T 1ryp_M           43 ----------------------------------------------VFDCGDNIVMSANGFAADGDALVKRFKNSVKWYH   76 (222)
T ss_dssp             ----------------------------------------------CEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcC-CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        162 CKYR-TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       162 ~~~g-~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      ++++ ++++++.+|+++++++|.++.      +||+  +++||||||++++|+||.+||+|++.++++.|+|+|+.++++
T Consensus        77 ~~~~~~~~~v~~la~~l~~~ly~~r~------~P~~--v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~  148 (222)
T 1ryp_M           77 FDHNDKKLSINSAARNIQHLLYGKRF------FPYY--VHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMP  148 (222)
T ss_dssp             HHTTTCCCCHHHHHHHHHHHHHTTTT------SCCC--EEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHH
T ss_pred             HHcCCCCCCHHHHHHHHHHHHHhcCC------CCce--EEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHH
Confidence            9999 999999999999999987554      7988  578999999756699999999999999999999999999999


Q ss_pred             HHHhh-----------------CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        241 ILDTD-----------------YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       241 ~Le~~-----------------y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      +||+.                 |+++||+|||++++++||..+.+||..++++++|++|+++|++..
T Consensus       149 ~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~  215 (222)
T 1ryp_M          149 FLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE  215 (222)
T ss_dssp             HHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred             HHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEE
Confidence            99998                 889999999999999999999999999999999999999998653

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=1.4e-42  Score=308.53  Aligned_cols=192  Identities=20%  Similarity=0.249  Sum_probs=179.6

Q ss_pred             CcccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210          1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF   80 (312)
Q Consensus         1 ~~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |..+|||+|||+++||||||+|+|+++|.++.+++.+|                                          
T Consensus         4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K------------------------------------------   41 (205)
T 1iru_J            4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQK------------------------------------------   41 (205)
T ss_dssp             TTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCC------------------------------------------
T ss_pred             ccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCcc------------------------------------------
Confidence            45789999999999999999999999999998888888                                          


Q ss_pred             CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210         81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~  160 (312)
                                                                     |++|++|++|++||..+|++.+.++++.+++.|
T Consensus        42 -----------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~   74 (205)
T 1iru_J           42 -----------------------------------------------IFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLY   74 (205)
T ss_dssp             -----------------------------------------------EEECSTTEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------EEEeCCCEEEEccccHHHHHHHHHHHHHHHHHH
Confidence                                                           999999999999999999999999999999999


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEec-CCCCeEEEEcCCceEEecC-eeeEccChHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDE-ILGPQLYMLDNTGLLIEGT-KFCVGSGAEYA  238 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~-~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a  238 (312)
                      +++++++++++.+|+++++++|.++.      .||+  +++|+||||+ +++|+||.+||+|+++++. +.++|+|+.++
T Consensus        75 ~~~~~~~~~v~~la~~l~~~~y~~r~------~P~~--v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a  146 (205)
T 1iru_J           75 ELKEGRQIKPYTLMSMVANLLYEKRF------GPYY--TEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQM  146 (205)
T ss_dssp             HHHSSSCCCHHHHHHHHHHHHHTTTT------SCCS--CCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHH
T ss_pred             HhhcCCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHH
Confidence            99999999999999999999976543      4988  5789999995 4789999999999998775 59999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210        239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ  289 (312)
Q Consensus       239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~  289 (312)
                      +++||+.|+++||+|||++++++||..+.+||..++++++|++|+++|++.
T Consensus       147 ~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~  197 (205)
T 1iru_J          147 YGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT  197 (205)
T ss_dssp             HHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred             HHHHhcccCCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEE
Confidence            999999999999999999999999999999999999999999999999765

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=2.1e-43  Score=330.41  Aligned_cols=211  Identities=25%  Similarity=0.302  Sum_probs=175.3

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+|+|.++.++.++|                                           
T Consensus        54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~K-------------------------------------------   90 (291)
T 2jay_A           54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRK-------------------------------------------   90 (291)
T ss_dssp             ----CCEEEEEETTEEEEEECCC--------CCCCCC-------------------------------------------
T ss_pred             ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCccc-------------------------------------------
Confidence            4689999999999999999999999999999999889                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|++||..+|++.|+++++.+++.|+
T Consensus        91 ----------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~  124 (291)
T 2jay_A           91 ----------------------------------------------VYITDDYTATGIAGTAAVAVEFARLYAVELEHYE  124 (291)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhh
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCC-----CeEEEEcCCceEE--ecCeeeEccC
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILG-----PQLYMLDNTGLLI--EGTKFCVGSG  234 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~g-----p~Ly~iDpsGs~~--e~~~~AiGsG  234 (312)
                      +.++.+++++.+++++++++|.+++   ..+|||+  +++||||||+.++     |+||++||+|+++  ++++.|+|+|
T Consensus       125 ~~~~~~i~v~~la~~la~~l~~~~~---~~~rpf~--v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsg  199 (291)
T 2jay_A          125 KLEGVPLTFAGKINRLAIMVRGNLA---AAMQGLL--ALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG  199 (291)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHTCHH---HHHHTCC--CEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTT
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHhhh---hhccccc--eeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecC
Confidence            9999999999999999999999875   2468988  5689999998545     8999999999999  8899999999


Q ss_pred             hHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc--E-----EEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210        235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC--V-----RLYKINGQGWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       235 s~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~--i-----eI~iItk~G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      +.+++++||+.|+++||+|||++++++||+.++++|..+++.  +     +|++|+++|+++++++||+++++.+.++.
T Consensus       200 s~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~l~~~ei~~~~~~~~~~~  278 (291)
T 2jay_A          200 SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESR  278 (291)
T ss_dssp             HHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEECCHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEEcCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999887654  2     69999999999999999999999886553

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=1e-42  Score=325.17  Aligned_cols=203  Identities=23%  Similarity=0.275  Sum_probs=186.4

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+ .++|                                           
T Consensus        31 v~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~K-------------------------------------------   66 (288)
T 3nzj_F           31 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVK-------------------------------------------   66 (288)
T ss_dssp             HHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCC-------------------------------------------
T ss_pred             HhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccce-------------------------------------------
Confidence            35899999999999999999999999876654 5677                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++||+|+++|+.+|++.|+++++.+++.|+
T Consensus        67 ----------------------------------------------I~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~  100 (288)
T 3nzj_F           67 ----------------------------------------------IQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK  100 (288)
T ss_dssp             ----------------------------------------------CEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+|+++++++|.+++  ++++|||+  +++||||||+ .||+||++||+|++++++++++|+|+++++++
T Consensus       101 ~~~~~~i~v~~lA~~l~~~l~~yt~--~~~~rP~g--v~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~  175 (288)
T 3nzj_F          101 KLYKTPIPIPAFADRLGQYVQAHTL--YNSVRPFG--VSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAE  175 (288)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTS--CTTBCCCC--EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred             HHcCCcCCHHHHHHHHHHHHHHHHH--hccCCCce--EEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHH
Confidence            9999999999999999999999999  88899998  5789999998 78999999999999999999999999999999


Q ss_pred             HHhh---CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC---CCeEEe-ChhHHHHHH
Q psy14210        242 LDTD---YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING---QGWQQV-LSRDVKDIY  299 (312)
Q Consensus       242 Le~~---y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk---~G~~~l-~~~eI~~~l  299 (312)
                      ||+.   |+++||++||++++++||..+++++..++..++|++|++   +|.+++ +.+++++..
T Consensus       176 Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~  240 (288)
T 3nzj_F          176 LEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAI  240 (288)
T ss_dssp             HHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHH
T ss_pred             HHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHH
Confidence            9999   999999999999999999999999988888999999998   355554 555544433

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=1.6e-42  Score=307.26  Aligned_cols=191  Identities=25%  Similarity=0.336  Sum_probs=179.8

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++.+|                                               
T Consensus         2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-----------------------------------------------   34 (201)
T 1iru_K            2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDK-----------------------------------------------   34 (201)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEccCcce-----------------------------------------------
Confidence            899999999999999999999999999999888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|++|++++++|..+|++.+.++++.+++.|+++++
T Consensus        35 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   72 (201)
T 1iru_K           35 ------------------------------------------MFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNG   72 (201)
T ss_dssp             ------------------------------------------EEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHH-HHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210        166 TGMTIRHAANLLVNMV-RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT  244 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l-~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~  244 (312)
                      ++++++.+++++++.+ +..+.     ++||+  +++|+||||+.++|+||.+||+|++.++++.|+|+|+.+++++||+
T Consensus        73 ~~~~v~~~a~~~~~~l~~~~~~-----~~p~~--~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~  145 (201)
T 1iru_K           73 YELSPTAAANFTRRNLADCLRS-----RTPYH--VNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDR  145 (201)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTS-----SSCCC--EEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhc-----CCCcc--EEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHh
Confidence            9999999999998876 44333     37988  5789999997568999999999999999999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeCh
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS  292 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~  292 (312)
                      .|+++||+|||++++++||..+.+||..++++++|++|+++|+++++.
T Consensus       146 ~~~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~  193 (201)
T 1iru_K          146 YYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDN  193 (201)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCC
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCCeEEeec
Confidence            999999999999999999999999999999999999999999988764

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=5.3e-43  Score=309.61  Aligned_cols=194  Identities=28%  Similarity=0.441  Sum_probs=181.7

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++++|                                               
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-----------------------------------------------   33 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDK-----------------------------------------------   33 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCc-----------------------------------------------
Confidence            899999999999999999999999999999888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|+++|..+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (199)
T 3unf_N           34 ------------------------------------------LSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELE   71 (199)
T ss_dssp             ------------------------------------------EEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ------------------------------------------eEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCee-eEccChHHHHHHHHh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVGSGAEYAQAILDT  244 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~-AiGsGs~~a~~~Le~  244 (312)
                      ++++++.+++++++++|.++       |||+  +++||||||++++|+||.  |+|+++++..+ ++|+|+++++++||+
T Consensus        72 ~~~~v~~~a~~l~~~l~~~~-------~p~~--v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~  140 (199)
T 3unf_N           72 EPPLVLAAANVVKNISYKYR-------EDLL--AHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDA  140 (199)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT-------TTCC--CCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcC-------CCce--EEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHh
Confidence            99999999999999999765       5887  578999999866899999  99998777655 569999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHH
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIY  299 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l  299 (312)
                      .|+++||+|||++++++||..+.+||..++++++|++|+++|  ++.++++||++++
T Consensus       141 ~~~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~  197 (199)
T 3unf_N          141 AYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY  197 (199)
T ss_dssp             HCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence            999999999999999999999999999999999999999998  5779999987654

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=6e-42  Score=304.17  Aligned_cols=190  Identities=19%  Similarity=0.244  Sum_probs=178.0

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      ..+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~K-------------------------------------------   41 (204)
T 1ryp_J            5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEK-------------------------------------------   41 (204)
T ss_dssp             GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred             CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcce-------------------------------------------
Confidence            4689999999999999999999999999988888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|+ |++|+++|..+|++.+.++++.+++.|+
T Consensus        42 ----------------------------------------------i~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~   74 (204)
T 1ryp_J           42 ----------------------------------------------IFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYK   74 (204)
T ss_dssp             ----------------------------------------------EEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHh
Confidence                                                          99999 9999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEec-CCCCeEEEEcCCceEEecC-eeeEccChHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDE-ILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQ  239 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~-~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~  239 (312)
                      ++++++++++.+|+++++++|.++.      .||+  +++||||||+ +++|+||.+||+|++.++. +.++|+|+.+++
T Consensus        75 ~~~~~~~~v~~la~~l~~~~y~~~~------~P~~--v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~  146 (204)
T 1ryp_J           75 LKEERAIEPETFTQLVSSSLYERRF------GPYF--VGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLF  146 (204)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHTTTT------SCCC--EEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHH
T ss_pred             hccCCCCCHHHHHHHHHHHHHHhcC------CCce--EEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHH
Confidence            9999999999999999999966543      3988  5789999996 4789999999999998775 699999999999


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210        240 AILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ  289 (312)
Q Consensus       240 ~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~  289 (312)
                      ++||+.|+++||+|||++++++||..+.++|..++++++|++|+++|++.
T Consensus       147 ~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~  196 (204)
T 1ryp_J          147 GMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK  196 (204)
T ss_dssp             HHHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred             HHHhhhcCCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEE
Confidence            99999999999999999999999999999999999999999999999764

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=3.7e-42  Score=317.40  Aligned_cols=193  Identities=25%  Similarity=0.338  Sum_probs=179.6

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++|.++.+++++|                                           
T Consensus        26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~K-------------------------------------------   62 (261)
T 3nzj_H           26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK-------------------------------------------   62 (261)
T ss_dssp             ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCC-------------------------------------------
T ss_pred             cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcce-------------------------------------------
Confidence            4689999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|++||+.+|++.+.++++.+++.|+
T Consensus        63 ----------------------------------------------I~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~   96 (261)
T 3nzj_H           63 ----------------------------------------------LHRISPKIWCAGAGTAADTEAVTQLIGSNIELHS   96 (261)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.++++++++++.++       +||+  +++||||||+ .||+||++||+|++.++++.|+|+|+.+++++
T Consensus        97 ~~~~~~~~v~~~a~~l~~~l~~~~-------~~~g--v~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~  166 (261)
T 3nzj_H           97 LYTSREPRVVSALQMLKQHLFKYQ-------GHIG--AYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAV  166 (261)
T ss_dssp             HHHTSCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHH
T ss_pred             HhhCCCCCHHHHHHHHHHHHHHhc-------Cccc--EEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHH
Confidence            999999999999999999998753       5777  5789999998 78999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChh
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSR  293 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~  293 (312)
                      ||+.|+++||+|||++++++||..+++||..++++++|++|+++| ++++.+.
T Consensus       167 Le~~~~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~  219 (261)
T 3nzj_H          167 LESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY  219 (261)
T ss_dssp             HHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEE
T ss_pred             HHHHhccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccc
Confidence            999999999999999999999999999999999999999999999 6665443

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=5e-42  Score=314.38  Aligned_cols=169  Identities=14%  Similarity=0.180  Sum_probs=151.6

Q ss_pred             EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC-CccCHHHHHHHHH-HHHHHhccCCCCCCCCCCcccceeeeE
Q psy14210        128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR-TGMTIRHAANLLV-NMVRKYRTGNHSSKIPNGLSFGTLMAA  205 (312)
Q Consensus       128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g-~~i~v~~la~~ls-~~l~~~~~~~~~~~rP~gls~~~IIaG  205 (312)
                      ||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ .+++++.++++++ .+.+.|++    ++|||+  +++||||
T Consensus        53 I~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~----~~rP~g--v~~liaG  126 (248)
T 3mi0_A           53 ISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE----QAKPYE--VELCVAE  126 (248)
T ss_dssp             EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH----SSSCCC--EEEEEEE
T ss_pred             eEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc----CCCCce--EEEEEEE
Confidence            99999999999999999999999999999999999999 8999999999999 66777776    579998  4689999


Q ss_pred             Eec---CCCCeEEEEcCCceEE-ecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-------HhcCcCC
Q psy14210        206 YDE---ILGPQLYMLDNTGLLI-EGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHAC-------RRDIHSG  274 (312)
Q Consensus       206 ~D~---~~gp~Ly~iDpsGs~~-e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~-------~rD~~sg  274 (312)
                      ||+   .++|+||++||+|++. ++++.|+|+|+.+++++||++|+++||+|||++++++||..++       +++ .++
T Consensus       127 ~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~  205 (248)
T 3mi0_A          127 VAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGV  205 (248)
T ss_dssp             CCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CC
T ss_pred             EcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCC
Confidence            997   4789999999999999 5999999999999999999999999999999999999999998       555 578


Q ss_pred             CcEEEEEEECCC----eEEeChhHHHHHHHHHh
Q psy14210        275 GCVRLYKINGQG----WQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       275 ~~ieI~iItk~G----~~~l~~~eI~~~l~~~~  303 (312)
                      ++++|++|+++|    +++++++||++++.++.
T Consensus       206 ~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~  238 (248)
T 3mi0_A          206 ASLEVAVLDANRPRRAFRRITGSALQALLVDQE  238 (248)
T ss_dssp             TTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred             CcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence            999999999997    99999999999998874

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=7e-42  Score=308.19  Aligned_cols=190  Identities=25%  Similarity=0.328  Sum_probs=180.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++++|                                               
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~K-----------------------------------------------   33 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK-----------------------------------------------   33 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCccc-----------------------------------------------
Confidence            799999999999999999999999999988888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------I~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (222)
T 1ryp_I           34 ------------------------------------------LHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS   71 (222)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------------EEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++++|.++       +||+  +++||||||+ ++|+||.+||+|++.++++.|+|+|+.+++++||+.
T Consensus        72 ~~~~v~~~a~~l~~~l~~~~-------~p~~--v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~  141 (222)
T 1ryp_I           72 REPRVVSALQMLKQHLFKYQ-------GHIG--AYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESH  141 (222)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhcC-------CCCC--eeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhh
Confidence            99999999999999998753       6887  5789999998 789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeChhH
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLSRD  294 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~~e  294 (312)
                      |+++||+|||++++++||..+++||..++++++|++|+++| ++++.+.+
T Consensus       142 ~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~  191 (222)
T 1ryp_I          142 WKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYL  191 (222)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEE
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEecee
Confidence            99999999999999999999999999899999999999999 98876544

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=1.7e-41  Score=308.21  Aligned_cols=191  Identities=28%  Similarity=0.356  Sum_probs=181.1

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++.+|                                               
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~K-----------------------------------------------   33 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSK-----------------------------------------------   33 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCC-----------------------------------------------
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccc-----------------------------------------------
Confidence            799999999999999999999999998888888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|++||..+|++.+.++++.+++.|+++++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   71 (234)
T 1iru_I           34 ------------------------------------------IHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTG   71 (234)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------------------------eEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      ++++++.+++++++.+|.++       +||+  +++||||||+ ++|+||.+||+|++.++++.|+|+|+.+++++||+.
T Consensus        72 ~~~~v~~la~~l~~~l~~~~-------~~~~--v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~  141 (234)
T 1iru_I           72 RLPRVVTANRMLKQMLFRYR-------GYIG--AALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDK  141 (234)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHhcC-------CCCc--eeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHh
Confidence            99999999999999999765       4777  6789999998 789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHH
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDV  295 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI  295 (312)
                      |+++||+|||++++++||..++++|..++++++|++|+++|++.+.+.++
T Consensus       142 ~~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~~~~~~~  191 (234)
T 1iru_I          142 FRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTV  191 (234)
T ss_dssp             CCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEEC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEEEcceec
Confidence            99999999999999999999999999899999999999999987765443

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=2.3e-41  Score=311.79  Aligned_cols=169  Identities=15%  Similarity=0.215  Sum_probs=152.7

Q ss_pred             EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC-CccCHHHHHHHHHH-HHHHhccCCCCCCCCCCcccceeeeE
Q psy14210        128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR-TGMTIRHAANLLVN-MVRKYRTGNHSSKIPNGLSFGTLMAA  205 (312)
Q Consensus       128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g-~~i~v~~la~~ls~-~l~~~~~~~~~~~rP~gls~~~IIaG  205 (312)
                      ||+|++||+|+++|+.+|++.|+++++.+++.|++.++ .+++++.+|+++++ +.+.|+.    +.|||+  +++||||
T Consensus        53 I~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~----~~rP~~--v~~lvaG  126 (259)
T 1q5q_A           53 VSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE----QPKPYE--VEICVAE  126 (259)
T ss_dssp             EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH----SSSCCC--EEEEEEE
T ss_pred             EEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc----CCCCce--EEEEEEE
Confidence            99999999999999999999999999999999999888 49999999999999 5455554    469988  5789999


Q ss_pred             Ee--c-CCCCeEEEEcCCceEE-ecCeeeEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH-----HhcCcCCCc
Q psy14210        206 YD--E-ILGPQLYMLDNTGLLI-EGTKFCVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHAC-----RRDIHSGGC  276 (312)
Q Consensus       206 ~D--~-~~gp~Ly~iDpsGs~~-e~~~~AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~-----~rD~~sg~~  276 (312)
                      ||  + ..+|+||++||+|+++ ++++.++|+|+.+++++||+.|+++||+|||++++++||..++     +||. ++++
T Consensus       127 ~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~  205 (259)
T 1q5q_A          127 VGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVAS  205 (259)
T ss_dssp             CCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSC
T ss_pred             EcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCc
Confidence            99  2 3799999999999999 8899999999999999999999999999999999999999998     8998 8999


Q ss_pred             EEEEEEECC----CeEEeChhHHHHHHHHHh
Q psy14210        277 VRLYKINGQ----GWQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       277 ieI~iItk~----G~~~l~~~eI~~~l~~~~  303 (312)
                      ++|++|+++    ++++++++||++++..+.
T Consensus       206 iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~  236 (259)
T 1q5q_A          206 LEVAVLDQSRPRRAFRRIAGTALEQLVPAEP  236 (259)
T ss_dssp             SEEEEEETTSSSCCEEECCHHHHHTTSCCC-
T ss_pred             EEEEEEECCCCcCCeEECCHHHHHHHHHHhh
Confidence            999999998    799999999999987653

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=100.00  E-value=6.2e-35  Score=254.95  Aligned_cols=170  Identities=19%  Similarity=0.224  Sum_probs=149.7

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcc-cccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDL-IVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      .+|||+|||+++||||||+|+|+|+|.+ +.+++++|                                           
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~K-------------------------------------------   39 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARK-------------------------------------------   39 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCC-------------------------------------------
T ss_pred             CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCc-------------------------------------------
Confidence            5799999999999999999999999999 99999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGY  160 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~  160 (312)
                                                                    |++| ++|++|+++|..+|++.|.++++.+++.|
T Consensus        40 ----------------------------------------------I~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y   73 (180)
T 2z3b_A           40 ----------------------------------------------VRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEY   73 (180)
T ss_dssp             ----------------------------------------------EEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHT
T ss_pred             ----------------------------------------------EEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHh
Confidence                                                          9999 99999999999999999999999999999


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec--CeeeEccChHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG--TKFCVGSGAEYA  238 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a  238 (312)
                      +   +  ..++.+ ..+++.++   +  +...|||+  +++|||  |   +|+||.+||+|+++++  ++.|+|+|+.++
T Consensus        74 ~---g--~~~~~~-~~l~~~~~---~--~~~~rp~~--~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a  135 (180)
T 2z3b_A           74 N---G--NLKRAA-VELAKEWR---S--DKVLRKLE--AMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYA  135 (180)
T ss_dssp             T---T--CHHHHH-HHHHHHHH---H--CTTGGGCC--CCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHH
T ss_pred             c---C--ChHHHH-HHHHHHHH---h--hhCcCcce--EEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHH
Confidence            8   2  223333 33454444   3  44578988  567888  4   6999999999999985  899999999999


Q ss_pred             HHHHHhhCCC---CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        239 QAILDTDYRP---DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       239 ~~~Le~~y~~---~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      +++||+.|++   +||.||   ++++||+.+.+||..++++++|.+|
T Consensus       136 ~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i  179 (180)
T 2z3b_A          136 LAAGRALKKHAGESMSASE---IARAALETAGEICVYTNDQIILEEL  179 (180)
T ss_dssp             HHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEE
Confidence            9999999998   999999   4789999999999999999999988

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=100.00  E-value=2.4e-34  Score=249.59  Aligned_cols=168  Identities=15%  Similarity=0.215  Sum_probs=151.2

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+|+|.++.+++++|                                               
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~K-----------------------------------------------   33 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARK-----------------------------------------------   33 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCc-----------------------------------------------
Confidence            799999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                ||+| ++|++++++|..+|++.|.++++.+++.|++  
T Consensus        34 ------------------------------------------i~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~--   69 (174)
T 1g3k_A           34 ------------------------------------------VRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG--   69 (174)
T ss_dssp             ------------------------------------------EEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT--
T ss_pred             ------------------------------------------EEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC--
Confidence                                                      9999 9999999999999999999999999999986  


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC---eeeEccChHHHHHH
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT---KFCVGSGAEYAQAI  241 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~---~~AiGsGs~~a~~~  241 (312)
                          ++...+..+++.++.++.     .||++    ++++|+|   +|+||++||+|++.+++   +.|+|+|+++++++
T Consensus        70 ----~~~~~~~~l~~~~~~~~~-----~r~~~----~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~  133 (174)
T 1g3k_A           70 ----HLLKSAVELAKDWRTDRA-----LRKLE----AMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSA  133 (174)
T ss_dssp             ----CHHHHHHHHHHHHHHSTT-----GGGCC----CEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHHhccC-----cCcce----EEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHH
Confidence                345555666666665443     56743    5888997   69999999999999988   99999999999999


Q ss_pred             HHhhCC-CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEE
Q psy14210        242 LDTDYR-PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKIN  283 (312)
Q Consensus       242 Le~~y~-~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iIt  283 (312)
                      ||+.|+ ++||.+   +++++||+.+.+||..++++++|++|+
T Consensus       134 le~~~~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~  173 (174)
T 1g3k_A          134 ARALVENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP  173 (174)
T ss_dssp             HHHHHHHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             HHHhcccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence            999999 999955   799999999999999999999999985

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=100.00  E-value=3.7e-34  Score=247.62  Aligned_cols=167  Identities=21%  Similarity=0.257  Sum_probs=147.3

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+++|.++.+++.+|                                               
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~K-----------------------------------------------   33 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARK-----------------------------------------------   33 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcce-----------------------------------------------
Confidence            799999999999999999999999999999889                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEe-cCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPV-SSSILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I-~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                ||+| ++|++++++|..+|++.+.++++.+++.|+++ 
T Consensus        34 ------------------------------------------i~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-   70 (171)
T 1m4y_A           34 ------------------------------------------VRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-   70 (171)
T ss_dssp             ------------------------------------------EEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-
T ss_pred             ------------------------------------------EEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-
Confidence                                                      9999 99999999999999999999999999999865 


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC--eeeEccChHHHHHHH
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT--KFCVGSGAEYAQAIL  242 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~--~~AiGsGs~~a~~~L  242 (312)
                          .++.+++.. +.++.++     ..|||++  ++|++  |   +|+||++||+|++.+++  +.|+|+|+++++++|
T Consensus        71 ----~~~~~~~l~-~~~~~~~-----~~~~~~~--~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~l  133 (171)
T 1m4y_A           71 ----LTKAAVELA-KDWRTDR-----VLRRLEA--LLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAA  133 (171)
T ss_dssp             ----HHHHHHHHH-HHHHHCT-----TGGGCCC--EEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHH
T ss_pred             ----HHHHHHHHH-HHHHHhC-----CCCceEE--EEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHH
Confidence                255555543 3444433     3578884  56666  5   79999999999999988  999999999999999


Q ss_pred             HhhCC-CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        243 DTDYR-PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       243 e~~y~-~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      |+.|+ ++||.   ++++++||+.+.+||..++++++|.++
T Consensus       134 e~~~~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          134 KALLRNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHhcccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence            99999 99996   678999999999999999999999764

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=83.78  E-value=0.18  Score=44.67  Aligned_cols=36  Identities=8%  Similarity=-0.137  Sum_probs=29.7

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP  121 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~  121 (312)
                      |++||..+-.+..                   .++|++++||||+++|++.+.-+
T Consensus        17 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g~   52 (241)
T 1ryp_D           17 QVEYALEAVKRGT-------------------CAVGVKGKNCVVLGCERRSTLKL   52 (241)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEECSSCEEEEEECCCSSCC
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEeeccCccC
Confidence            8888877766655                   78999999999999999876643

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=83.25  E-value=0.2  Score=44.35  Aligned_cols=36  Identities=8%  Similarity=-0.011  Sum_probs=29.7

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP  121 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~  121 (312)
                      |++||..+-.++.                   .++|++++||||+++|++.+.-+
T Consensus        15 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g~   50 (242)
T 1ryp_E           15 QVEYSLEAIKLGS-------------------TAIGIATKEGVVLGVEKRATSPL   50 (242)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEECSSCEEEEEECCCSSTT
T ss_pred             HHHhHHHHHHcCC-------------------CEEEEEECCEEEEEEeecCCCcC
Confidence            8888877766655                   78999999999999999876643

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=82.62  E-value=0.23  Score=43.75  Aligned_cols=36  Identities=6%  Similarity=-0.105  Sum_probs=30.2

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP  121 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~  121 (312)
                      |++||..+-.++.                   .++|++++||||+++|++.+..+
T Consensus        20 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~~l   55 (233)
T 1ryp_F           20 QVEYALEAIKQGS-------------------VTVGLRSNTHAVLVALKRNADEL   55 (233)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEECSSEEEEEEECCCSSTT
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEcCCEEEEEEEecccccc
Confidence            8888877776665                   68999999999999999877654

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=82.09  E-value=0.19  Score=44.59  Aligned_cols=35  Identities=6%  Similarity=-0.003  Sum_probs=29.0

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |++||..+-.++.                   .++|++++||||+++|++.+.-
T Consensus        20 QvEyA~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g   54 (244)
T 1ryp_C           20 QVEYALESISHAG-------------------TAIGIMASDGIVLAAERKVTST   54 (244)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEEECSSCCS
T ss_pred             HHHhHHHHHhcCC-------------------cEEEEEeCCEEEEEEeeccCCc
Confidence            8888877766555                   7899999999999999987654

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=81.60  E-value=0.23  Score=44.60  Aligned_cols=36  Identities=8%  Similarity=-0.078  Sum_probs=28.7

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP  121 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~  121 (312)
                      |++||..+-.++.                   .++|++++||||+++|++.+.-+
T Consensus        20 QvEYA~~av~~Gt-------------------t~vgi~~~dgVVlaaD~r~~~g~   55 (261)
T 1iru_C           20 QVEYAMEAIGHAG-------------------TCLGILANDGVLLAAERRNIHKL   55 (261)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEBCSSEEEEEECCCCCCTT
T ss_pred             HHHhHHHHHhcCC-------------------cEEEEEeCCEEEEEEecccCCcc
Confidence            7788776665544                   78999999999999999876643

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=81.48  E-value=0.29  Score=43.38  Aligned_cols=34  Identities=12%  Similarity=-0.101  Sum_probs=28.7

Q ss_pred             ccccccccccc-cccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQ-DHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |++||..+-.+ +.                   .++|++++||||+++|++.+.
T Consensus        18 QvEYA~~av~~~Gt-------------------t~vgi~~~dgVvlaad~r~~~   52 (243)
T 1ryp_A           18 QVEYAFKATNQTNI-------------------NSLAVRGKDCTVVISQKKVPD   52 (243)
T ss_dssp             HHHHHHHHTTTTCC-------------------CEEEEECSSEEEEEEECCCCC
T ss_pred             HHHHHHHHHhcCCC-------------------cEEEEEeCCEEEEEEEecCCc
Confidence            88888877776 55                   689999999999999988664

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=81.36  E-value=0.26  Score=43.28  Aligned_cols=35  Identities=9%  Similarity=-0.038  Sum_probs=28.7

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |++|+..+-.++.                   .++|++++||||+++|++.+..
T Consensus        23 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~~   57 (233)
T 1yar_A           23 QVEYAREAVKKGS-------------------TALGMKFANGVLLISDKKVRSR   57 (233)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEECCCCCCT
T ss_pred             HHHhHHHHHhcCC-------------------cEEEEEECCEEEEEEeccCCcc
Confidence            7888877666555                   7899999999999999987653

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=81.30  E-value=0.34  Score=42.52  Aligned_cols=34  Identities=9%  Similarity=-0.049  Sum_probs=28.8

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |++|+..+-.++.                   .++|++++||||+++|++.+.
T Consensus        20 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~   53 (233)
T 1iru_B           20 QIEYALAAVAGGA-------------------PSVGIKAANGVVLATEKKQKS   53 (233)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEECSSCEEEEEECCCCC
T ss_pred             hhHhHHHHHHcCC-------------------cEEEEEeCCEEEEEEEecCCc
Confidence            8888887776665                   789999999999999988654

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=80.59  E-value=0.22  Score=44.05  Aligned_cols=36  Identities=6%  Similarity=-0.116  Sum_probs=29.6

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVP  121 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~  121 (312)
                      |++||..+-.++.                   .++|++++||||+++|++.+.-.
T Consensus        23 QvEya~~av~~Gt-------------------t~vgi~~~dgVvlaaD~r~~~g~   58 (241)
T 1iru_E           23 QVEYDIEAIKLGS-------------------TAIGIQTSEGVCLAVEKRITSPL   58 (241)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHcCC-------------------cEEEEEcCCEEEEEEecccCCcC
Confidence            8888877766655                   78999999999999999876643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	8e-30
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	4e-06
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	7e-28
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	5e-07
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-26
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	1e-06
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-26
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-06
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	1e-25
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	2e-05
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	1e-24
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	1e-04
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	4e-24
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	1e-06
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-23
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-05
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-23
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-05
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	6e-23
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	1e-06
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-22
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	1e-04
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	2e-22
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	4e-07
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	3e-22
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	1e-04
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	3e-22
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	2e-04
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	8e-22
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	5e-05
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	2e-21
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	4e-21
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	2e-06
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	4e-21
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-04
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	6e-21
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-04
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	1e-20
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	5e-04
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	2e-20
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	4e-05
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-20
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	1e-04
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	6e-20
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	3e-19
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	5e-07
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	3e-19
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	1e-05
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	7e-19
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	0.002
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	3e-18
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	2e-04
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	8e-18
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	0.001
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	2e-17
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	1e-05
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-16
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	0.002
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	4e-16
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-04
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	6e-16
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	2e-05
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	2e-15
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	4e-06
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	2e-14
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	7e-05
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	2e-13
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	2e-05
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	2e-12
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	1e-05
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	0.001

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  110 bits (275), Expect = 8e-30
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 10/181 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  S + +  + ++ P+   I C  +G+AAD      ++  +   +  +      +  AA
Sbjct: 21  TTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           +L   M  +Y            L  G ++A +D   G Q+Y +   G+++  +    GSG
Sbjct: 81  SLFKEMCYRY---------REDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSG 131

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ-QVLSR 293
           + Y    +D  YR  +++EE      +A+  A  RD  SGG +RL  I   G + QVL  
Sbjct: 132 SSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLG 191

Query: 294 D 294
           D
Sbjct: 192 D 192

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +  ++  G++L  DSR T    I ++  +K
Sbjct: 1  TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK 33

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 7e-28
 Identities = 65/190 (34%), Positives = 106/190 (55%), Gaps = 8/190 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + V   T  +VI ++  +L T+AG AADC +W   L  +C+ +E + +  +++  A+
Sbjct: 21  TAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L N+V +Y+          GLS GT++  Y    GP +Y +D+ G  ++G  FCVGSG
Sbjct: 81  KILSNLVYQYK--------GAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSG 132

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
             +A  +LD++Y+ DLS E+A  L   +I  A  RD +SGG V LY +   GW    + D
Sbjct: 133 QTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHD 192

Query: 295 VKDIYNDRKE 304
           V +++   KE
Sbjct: 193 VGELFWKVKE 202

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (112), Expect = 5e-07
 Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 15/178 (8%)

Query: 6   TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
           TTTL FR+  GII+A DSRATA + + SQ + +  +         ++P   G    G + 
Sbjct: 1   TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIE---------INPFLLGTMAGGAAD 51

Query: 66  SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTS 125
            Q       +Q          + S    S     L++     G   G      T     +
Sbjct: 52  CQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPT 111

Query: 126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
              +    + L            + + +          Y+  +++  A  L    +  
Sbjct: 112 IYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN------YKWDLSVEDALYLGKRSILA 163

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 72/185 (38%), Positives = 108/185 (58%), Gaps = 9/185 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + +   T  +VI ++  +L T+AG AADC +W   LA++C+ YE + +  +++  A+
Sbjct: 21  TAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            LL NMV +Y+          GLS GT++  +D+  GP LY +D+ G  I G  F VGSG
Sbjct: 81  KLLANMVYQYK--------GMGLSMGTMICGWDKR-GPGLYYVDSEGNRISGATFSVGSG 131

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           + YA  ++D  Y  DL  E+AY LA  AIY A  RD +SGG V LY +   GW +V S +
Sbjct: 132 SVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDN 191

Query: 295 VKDIY 299
           V D++
Sbjct: 192 VADLH 196

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 31/178 (17%), Positives = 57/178 (32%), Gaps = 16/178 (8%)

Query: 6   TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
           TTTL F++  G+I+A DSRATA   I SQ + K  +  +                  +  
Sbjct: 1   TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIE--INPYLLGTMAGGAADCSFWERL 58

Query: 66  SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTS 125
             R   + E +        ++ +S+ + +         +  G   CG        P    
Sbjct: 59  LARQCRIYELRNKE--RISVAAASKLLANMVYQYKGMGLSMGTMICG---WDKRGPGLYY 113

Query: 126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRK 183
                   S      G+ +   Y +          +  Y   + +  A +L    + +
Sbjct: 114 VDSEGNRISGATFSVGSGSVYAYGV---------MDRGYSYDLEVEQAYDLARRAIYQ 162

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (251), Expect = 3e-26
 Identities = 34/177 (19%), Positives = 79/177 (44%), Gaps = 10/177 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + + +  + ++  V   I C  +G+AAD       +    + Y  +Y T  +   AA
Sbjct: 30  TTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAA 88

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           ++   +  + +         + L+ G ++A YD+    ++Y +   G + +      GSG
Sbjct: 89  SVFKELCYENK---------DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSG 139

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVL 291
           + +     D ++R ++S+EE       ++  A + D  SGG +R+  +   G ++++
Sbjct: 140 STFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLI 196

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           G + +   + +G+IL  DSR T    I ++  +K  +
Sbjct: 8  LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTR 45

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.9 bits (248), Expect = 1e-25
 Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 10/190 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +Q   V      ++  +S  I C  AG AAD       +    + +         +  A 
Sbjct: 21  TQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L   + KY+                ++A  D   G  L+ +   G    G    +GSG
Sbjct: 81  QMLKQHLFKYQGHIG---------AYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSG 130

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           +  A A+L++ ++ DL++EEA  LA+ AI      D+ SG  V +  +      + L   
Sbjct: 131 SLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190

Query: 295 VKDIYNDRKE 304
           +     + K+
Sbjct: 191 LTPNVREEKQ 200

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
          TT +G ++  G+++A D+R+T   ++  +   K  +
Sbjct: 1  TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHR 36

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.8 bits (240), Expect = 1e-24
 Identities = 36/177 (20%), Positives = 73/177 (41%), Gaps = 7/177 (3%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           ++  +V  ++  +   +S   L + AG A D V +   +    + Y  +    ++ +  +
Sbjct: 22  TRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCVGS 233
           + +   + K       S+ P  ++    +  YD +   P+LY +D  G  +E      G 
Sbjct: 82  SFVRQELAKSI----RSRRPYQVNVL--IGGYDKKKNKPELYQIDYLGTKVELPYGAHGY 135

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
              Y  ++LD  YRPD++ EE   L    +    +R       V +  ++  G +QV
Sbjct: 136 SGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV 192

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
             LG R  + +ILA+    T    ++    +K  Q
Sbjct: 2  DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQ 37

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 95.2 bits (236), Expect = 4e-24
 Identities = 39/185 (21%), Positives = 75/185 (40%), Gaps = 11/185 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + + H    ++  + +    T+AG   D    +  +  E + Y  + R  M I   A
Sbjct: 21  TMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            LL NM+ + +                L+   D    P ++ +D  G  +E      GSG
Sbjct: 81  TLLSNMLNQVK--------YMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSG 130

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI-NGQGWQQVLSR 293
           + +   +L++ Y   ++ +E   L   AI  A +RD  SGG + +  I    G+ Q+ + 
Sbjct: 131 SPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTD 190

Query: 294 DVKDI 298
            ++  
Sbjct: 191 QIESR 195

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.9 bits (108), Expect = 1e-06
 Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 29/184 (15%)

Query: 6   TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
           TTT+G    + +I+AT+ R T  + I+ +   K  Q  +     +      G  +    Y
Sbjct: 1   TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQ--IDTYTGMTIAGLVGDAQVLVRY 58

Query: 66  SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV----- 120
            +    +   Q+   +              ++   L        +  P+     V     
Sbjct: 59  MKAELELYRLQRRVNMPI------------EAVATLLSNMLNQVKYMPYMVQLLVGGIDT 106

Query: 121 -PHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
            PH  S      S   +    G+ +  VY +          E +Y   MT+    +L++ 
Sbjct: 107 APHVFSIDAAGGSVEDIYASTGSGSPFVYGV---------LESQYSEKMTVDEGVDLVIR 157

Query: 180 MVRK 183
            +  
Sbjct: 158 AISA 161

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 93.8 bits (232), Expect = 2e-23
 Identities = 45/194 (23%), Positives = 67/194 (34%), Gaps = 9/194 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +Q + +      +V          +AG A   +  +   A E + YE      +T    A
Sbjct: 21  TQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIE--GTKFCVG 232
           N L +MVR              L  G  + A DE    ++   D  G   E       VG
Sbjct: 81  NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVG 140

Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVR-------LYKINGQ 285
           SG+ +A++ L   Y PD  EE A   A  ++Y A   D  +GG             I   
Sbjct: 141 SGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA 200

Query: 286 GWQQVLSRDVKDIY 299
           G   V      ++ 
Sbjct: 201 GAVHVSEETTSELA 214

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +   Y  G++LA D RAT  +LI S+ + K
Sbjct: 1  TTIVALTYKGGVLLAGDRRATQGNLIASRDVEK 33

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 92.9 bits (230), Expect = 3e-23
 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 10/191 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  + +    + ++  ++  +  T AG+  D  +    +  E   YE +     T+R  A
Sbjct: 21  TMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKF-CVGS 233
            L  N++  YR   +            L+    +  G  +Y +D  G  IE       GS
Sbjct: 81  TLTSNLLNSYRYFPY---------LVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGS 131

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
           G+  A  +L+  + P++  +EA  LA  AIY A +RD  SG  + + KI    + Q    
Sbjct: 132 GSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPE 191

Query: 294 DVKDIYNDRKE 304
           +V+ I    ++
Sbjct: 192 EVEQILAKFRK 202

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
          TTT+G    +G+++AT+ RAT  + I S+   K  Q
Sbjct: 1  TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQ 36

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.9 bits (230), Expect = 6e-23
 Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 8/184 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRH-A 173
           S  S +  N   ++IPV  + +  ++G+ +D  +    L                     
Sbjct: 29  SYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALE 88

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
            + +   +        S   P   +   ++A         L  ++  G+         G 
Sbjct: 89  PSYIFEYLATVMYQRRSKMNPLWNAI--IVAGVQSNGDQFLRYVNLLGVTYSSPTLATGF 146

Query: 234 GAEYAQAILDTDYR-----PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
           GA  A  +L          P  + + A     +A+     RD  S     L  I+     
Sbjct: 147 GAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGL 206

Query: 289 QVLS 292
               
Sbjct: 207 TFKK 210

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 3  ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
          +TGT+ +  +Y  G+I+A D+  +   L+    + +   
Sbjct: 6  VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIP 44

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.0 bits (228), Expect = 1e-22
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 3/181 (1%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
             S  +  ++  +++ + + I C ++G  AD    +     E + +   Y   MT+    
Sbjct: 47  ITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVT 106

Query: 175 NLLVNMVRKYRT-GNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
             + N+  ++         +        L    DE  GPQL+ +D +G  ++     +GS
Sbjct: 107 QAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGS 165

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
            +E AQ+ L   Y   ++ +EA   +   +       + +   + L  +       + ++
Sbjct: 166 ASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKL-NATNIELATVQPGQNFHMFTK 224

Query: 294 D 294
           +
Sbjct: 225 E 225

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 22/187 (11%)

Query: 4   TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
            G+T +G +  EG+ LA + R T+  L+    + K  +      C       +G     +
Sbjct: 26  LGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGC-----AMSGLIADAK 79

Query: 64  SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV--- 120
           +   ++    +     +      +S    +S  + +        G    PF  +      
Sbjct: 80  TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGV 139

Query: 121 ----PHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
               P                   G+A++               +  Y   MT++ A   
Sbjct: 140 DEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSS---------LQELYHKSMTLKEAIKS 190

Query: 177 LVNMVRK 183
            + ++++
Sbjct: 191 SLIILKQ 197

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.4 bits (226), Expect = 2e-22
 Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 10/190 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           ++   V      ++  +S +I C  AG AAD       ++   + +         +  A 
Sbjct: 21  TEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
            +L  M+ +Y            +    ++   D   GP LY +   G   +     +GSG
Sbjct: 81  RMLKQMLFRY---------RGYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSG 130

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           +  A A+ +  +RPD+ EEEA  L + AI      D+ SG  + L  I+      +    
Sbjct: 131 SLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYT 190

Query: 295 VKDIYNDRKE 304
           V +    R  
Sbjct: 191 VPNKKGTRLG 200

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 3/154 (1%)

Query: 6   TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
           TT  G  Y +GI+L  D+RAT   ++  +  +K     +  +                  
Sbjct: 1   TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHF--ISPNIYCCGAGTAADTDMTTQL 58

Query: 66  SQRSHCVAETQQDHFLSP-PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNT 124
              +  +              ++  + ++      +   +  GG         S  PH +
Sbjct: 59  ISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGS 118

Query: 125 SFQVIPVSSSILCTLAGNAADCVYWLHSLAKECK 158
           + ++  V+       A    +  +      +E K
Sbjct: 119 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAK 152

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 91.2 bits (226), Expect = 3e-22
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 11/189 (5%)

Query: 122 HNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMV 181
              + ++  V   I C  +G   D  + ++   +E   ++  Y+T + I   A+ L   V
Sbjct: 57  PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYV 116

Query: 182 RKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI 241
           + +   N            T+    D+  G  LYML+ +G          G G + A+A 
Sbjct: 117 QAHTLYNS----VRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAE 171

Query: 242 LDT---DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI---NGQGWQQVLSRDV 295
           L+     +   LS  EA   A   IY A   +      + +         G  + +  D+
Sbjct: 172 LEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDL 231

Query: 296 KDIYNDRKE 304
                D  +
Sbjct: 232 LQEAIDFAQ 240

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
           GTT++G +  +G++ A +   T + L+V QK  K     
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKLIT-SKLLVPQKNVKIQVVD 67

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (225), Expect = 3e-22
 Identities = 32/190 (16%), Positives = 70/190 (36%), Gaps = 2/190 (1%)

Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
           S  +  ++  +++ +   I C ++G  AD    +         +   Y   + +      
Sbjct: 48  SPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQS 107

Query: 177 LVNMVRKYRTGNHSSKIPNGLSFG--TLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           + ++  ++  G    +      FG   L+A +D   G QL+  + +G         +GSG
Sbjct: 108 VCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSG 167

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           +E AQA L  ++   L+ +EA  L    +       +              G++   +  
Sbjct: 168 SEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEK 227

Query: 295 VKDIYNDRKE 304
             ++  + KE
Sbjct: 228 TAELIKELKE 237

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 27/187 (14%), Positives = 64/187 (34%), Gaps = 20/187 (10%)

Query: 4   TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
            G+T +G    EG++L  + RAT+  L+ S  + K  +      C       +G     +
Sbjct: 25  LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGC-----AMSGLTADAR 78

Query: 64  SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHN 123
           S  + +   A T   ++      +S    +              GE      +  + P  
Sbjct: 79  SMIEHARTAAVTHNLYYDEDINVESLTQSVC-------DLALRFGEGASGEERLMSRPFG 131

Query: 124 TSFQVI---PVSSSILCTLAGNAADCVYWLHSLAKECKG----YECKYRTGMTIRHAANL 176
            +  +          L     +     Y   ++    +G       ++ + +T++ A  L
Sbjct: 132 VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELL 191

Query: 177 LVNMVRK 183
           ++ ++++
Sbjct: 192 VLKILKQ 198

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.5 bits (221), Expect = 8e-22
 Identities = 31/200 (15%), Positives = 55/200 (27%), Gaps = 24/200 (12%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
               ++      +V     +I+ +  G AAD    +       K Y   +       ++A
Sbjct: 30  ITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSA 89

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
              +  +   +               T++A  DE     +Y  D  G          G+ 
Sbjct: 90  ARNIQHLLYGKRFFP-------YYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAA 142

Query: 235 AEYAQAILDTDYR-----------------PDLSEEEAYALATSAIYHACRRDIHSGGCV 277
           A      LD                       LS EE   L   +   A  R I  G  +
Sbjct: 143 ASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGL 202

Query: 278 RLYKINGQGWQQVLSRDVKD 297
            +  +   G ++      +D
Sbjct: 203 EILIVTKDGVRKEFYELKRD 222

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           G T LG    +  +LA D+R   +  I S+   K   
Sbjct: 8  NGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFD 45

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.9 bits (220), Expect = 2e-21
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
             S      ++ ++  V   +   +AG  AD         +E   +   +   + ++H A
Sbjct: 53  VLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLA 112

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           + +   V  Y   +     P G SF  ++ +Y    G QLYM+D +G+        +G  
Sbjct: 113 DRVAMYVHAYTLYSA--VRPFGCSF--MLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKA 168

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHA 266
            + A+  ++     +++  +        IY  
Sbjct: 169 RQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIV 200

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.5 bits (216), Expect = 4e-21
 Identities = 34/177 (19%), Positives = 59/177 (33%), Gaps = 10/177 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTG-MTIRHA 173
           S  S        +++ V++S +   +G+ AD  Y    L +     E        + R  
Sbjct: 29  SYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAI 88

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
            + L   +   R+            + T++          L  +D  G+  E      G 
Sbjct: 89  HSWLTRAMYSRRSKM-------NPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGY 141

Query: 234 GAEYAQAILDTDYR--PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQ 288
           GA  AQ +L       P LS+ EA  L    +     RD  S    +   +  +G +
Sbjct: 142 GAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVE 198

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TGT+ LG ++  G+++A D   +   L   + +++
Sbjct: 7  TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR 41

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 88.2 bits (218), Expect = 4e-21
 Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 7/189 (3%)

Query: 117 SSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANL 176
           S  +  +T  ++  +   I    +G  AD    +     E +     Y   +T++  A  
Sbjct: 53  SKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKK 112

Query: 177 LVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE 236
           + +  ++Y                 L+A  +E+  P+LY  D +G L+E     +G G  
Sbjct: 113 ICDFKQQY----TQYGGVRPFGVSLLIAGVNEV--PKLYETDPSGALLEYKATAIGMGRM 166

Query: 237 YAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC-VRLYKINGQGWQQVLSRDV 295
                 + +YR DLS ++A  L   A+  +   ++      V   K++ + +++V   ++
Sbjct: 167 AVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEEL 226

Query: 296 KDIYNDRKE 304
           K       E
Sbjct: 227 KPYVERANE 235

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           G T +G +  EG+IL  D R  +  L+    + K  +
Sbjct: 30 RGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYK 66

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (217), Expect = 6e-21
 Identities = 38/184 (20%), Positives = 73/184 (39%), Gaps = 8/184 (4%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
                     S ++  ++  + C++AG  +D     + L    + Y  +Y+  +      
Sbjct: 51  IHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLV 110

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
             L ++ + Y       K P G+S   L   +D+  G QLY  D +G        C+G+ 
Sbjct: 111 TALCDIKQAYT--QFGGKRPFGVSL--LYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNN 166

Query: 235 AEYAQAILDTDY-RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI---NGQGWQQV 290
           +  A ++L  DY   +++ + A ALA   +         S   V +  +   NG+   +V
Sbjct: 167 SAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRV 226

Query: 291 LSRD 294
           L + 
Sbjct: 227 LKQK 230

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 9/40 (22%), Positives = 15/40 (37%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
             T LG    +G++LA + R     L       K  + +
Sbjct: 29 HAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLN 68

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.7 bits (211), Expect = 1e-20
 Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 6/176 (3%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           + +     +   ++  +S  IL    G A D V +   + K  + Y+ +    ++   AA
Sbjct: 22  ASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           N     +         S+ P  ++    +A YDE  GP LY +D    L +      G G
Sbjct: 82  NFTRRNLADCL----RSRTPYHVNLL--LAGYDEHEGPALYYMDYLAALAKAPFAAHGYG 135

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV 290
           A    +ILD  Y P +S E A  L    +    +R I +     +  I+  G   +
Sbjct: 136 AFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDL 191

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 13/174 (7%)

Query: 6   TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY 65
              +G + P+ +++A+D  A +N + +    +K  +  + +   LL     G       Y
Sbjct: 2   EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFK--MSEKILLLCVGEAGDTVQFAEY 59

Query: 66  SQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTS 125
            Q++  + + +  + LSP  + +       D      P +      G         ++  
Sbjct: 60  IQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAG---------YDEH 110

Query: 126 FQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVN 179
                     L  LA        +   L       +  Y   ++   A  LL  
Sbjct: 111 EGPALYYMDYLAALAKAPFAAHGYGAFLTLSI--LDRYYTPTISRERAVELLRK 162

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 32/184 (17%), Positives = 70/184 (38%), Gaps = 5/184 (2%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
            +S  +  N+  ++  +   +    +G  AD    +       +  +  Y + + I +  
Sbjct: 42  VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLV 101

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
             + + +++Y    +    P       + A  D+I GP+L+  D  G + E     +GSG
Sbjct: 102 KRVADQMQQYT--QYGGVRP--YGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSG 156

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
            +   + L+ +Y+ +L E+EA  L   A+  +                 G  ++     +
Sbjct: 157 KDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEE 216

Query: 295 VKDI 298
           VK  
Sbjct: 217 VKKF 220

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSC 48
           G+T LG ++  G++L +D +  +  LI    + K        + 
Sbjct: 21 KGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAA 64

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.5 bits (211), Expect = 3e-20
 Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 10/190 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           + +      ++ ++  ++  I   +AG  AD    +++     + Y   Y   + +    
Sbjct: 52  TSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILV 111

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
             L ++ + Y    H    P G+SF    A YD+  G QLY  + +G         VG+ 
Sbjct: 112 RRLSDIKQGYT--QHGGLRPFGVSFI--YAGYDDRYGYQLYTSNPSGNYTGWKAISVGAN 167

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI-----NGQGWQQ 289
              AQ +L  DY+ D+  ++A  LA   +         +   +    I     +G+ +Q+
Sbjct: 168 TSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQK 227

Query: 290 VLSRD-VKDI 298
           +     +KDI
Sbjct: 228 IFKPQEIKDI 237

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
             T +G    +GI+LA + + T+  L       K  + +
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN 69

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.8 bits (209), Expect = 6e-20
 Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 12/191 (6%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
                +   T   +  +S +I   + G   D          E   +  KY   M     A
Sbjct: 50  VPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLA 109

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
             + N+ + Y     +   P  L       + DE LGP +Y  D  G  +       G  
Sbjct: 110 KRMANLSQIYT--QRAYMRP--LGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPK 165

Query: 235 AEYAQAILDTDYRPDL-------SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
            +     L+  ++          S E+    A + +  A   +  S   + +       +
Sbjct: 166 QQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKF 224

Query: 288 QQVLSRDVKDI 298
             + + ++++ 
Sbjct: 225 FTLSAENIEER 235

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.2 bits (202), Expect = 3e-19
 Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 10/175 (5%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
              + +      ++ P+   +   LAG A D       L      YE K    +      
Sbjct: 28  GIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLM 87

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-EILGPQLYMLDNTGLLIEGTKFCVG- 232
           +++ N++ + R G + +          ++A  D +   P +  LD  G  +    F V  
Sbjct: 88  SMVANLLYEKRFGPYYT--------EPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSG 139

Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGW 287
           + AE    + ++ + P++  +  +   + A+ +A  RD  SG  V ++ I     
Sbjct: 140 TCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKI 194

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.1 bits (111), Expect = 5e-07
 Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 1  MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGER 60
          M   G   +  +    + +A D R      +V+    K     +GD   +         +
Sbjct: 3  MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFP--MGDRLYIGLAGLATDVQ 60

Query: 61 CGQSYSQRSHCVAETQQDHFLSPP 84
                +    + E ++   + P 
Sbjct: 61 TVAQRLKFRLNLYELKEGRQIKPY 84

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.1 bits (202), Expect = 3e-19
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 10/177 (5%)

Query: 123 NTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVR 182
           +  F+ I     +   + G A D          +   Y+ K    +       L+ + + 
Sbjct: 36  SNKFEKIFHYGHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSLY 95

Query: 183 KYRTGNHSSKIPNGLSFGTLMAAYDEILG-PQLYMLDNTGLLIEGTKFCVG-SGAEYAQA 240
           + R G            G ++A  +   G P +   D  G + E   F V  + ++    
Sbjct: 96  ERRFGP--------YFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFG 147

Query: 241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKD 297
           + ++ Y P+L  E+ +   + A+ +A  RD  SG    +Y I      +   +  +D
Sbjct: 148 MCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD 204

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 5  GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
          G   +     + + +A D R  +  L VS K  K   
Sbjct: 8  GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFH 44

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.6 bits (201), Expect = 7e-19
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 9/171 (5%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTG 187
           +I     +  +LAG A D     + L ++C      +   + +  A +LL +  +K    
Sbjct: 62  IIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNT-- 119

Query: 188 NHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL----D 243
                 P     G L+  YD+  G  L     +G + E     +G+ ++ A+  L    D
Sbjct: 120 QSYGGRP--YGVGLLIIGYDKS-GAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD 176

Query: 244 TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
           T  + D + +E       AI  + R +  +   + +  +       +   +
Sbjct: 177 TFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGE 227

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           G+ T+G R     +L    R         +K+ K  +
Sbjct: 30 QGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDE 67

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (197), Expect = 3e-18
 Identities = 31/198 (15%), Positives = 75/198 (37%), Gaps = 14/198 (7%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           S +      T  ++  +  ++    AG  AD    ++    EC+ +       +T+ +  
Sbjct: 48  SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYIT 107

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
             + ++ ++Y     + + P       L+  +D    P+LY  D +G         +G G
Sbjct: 108 RYIASLKQRYT--QSNGRRP--FGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRG 163

Query: 235 AEYAQAILDTDYRPDL--SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLS 292
           A+  +  L+ +Y  +   +++    L   A+          G  + L  +      ++L+
Sbjct: 164 AKSVREFLEKNYTDEAIETDDLTIKLVIKALLEV---VQSGGKNIELAVMRRDQSLKILN 220

Query: 293 RD-----VKDIYNDRKEA 305
            +     V +I  +++E 
Sbjct: 221 PEEIEKYVAEIEKEKEEN 238

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
           G+T +G R  + ++L  + ++ A  L   + + K C   
Sbjct: 27 KGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALD 65

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.6 bits (193), Expect = 8e-18
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 6/184 (3%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
            +S      +  +V P++  I    +G   D    +H   K  + Y   Y+  +      
Sbjct: 51  QKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLV 110

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
             + +++++Y                +L+        P L+  D +G         +G  
Sbjct: 111 QRVASVMQEYTQSGGV-----RPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKN 165

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRD 294
               +  L+  Y  DL  E+A   A   +  +    + +   + +   N  G++++   +
Sbjct: 166 YVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGFRRLTPTE 224

Query: 295 VKDI 298
           VKD 
Sbjct: 225 VKDY 228

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           G  ++G +   G++LAT+ +  +  L   + ++K   
Sbjct: 30 GGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEP 66

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.8 bits (191), Expect = 2e-17
 Identities = 30/182 (16%), Positives = 63/182 (34%), Gaps = 6/182 (3%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKG-YECKYRTGMTIRHA 173
           S S      T  +V  ++  I    +G   D    +    K     Y+  Y      +  
Sbjct: 51  SSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLL 110

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
            + +  ++++                  L+A +DE  G  LY +D +G         +G 
Sbjct: 111 VSEVAKIMQEATQSGGV----RPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGK 166

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSR 293
           G+  A+  L+  +  +L  E+A  +A   +  +   +  +G  + L  I  +    +   
Sbjct: 167 GSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYT 225

Query: 294 DV 295
            +
Sbjct: 226 GI 227

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 21/183 (11%), Positives = 59/183 (32%), Gaps = 17/183 (9%)

Query: 4   TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
            G T+LG +   G+++AT+ ++++  L +S+ L+K    +                    
Sbjct: 30  QGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLT-------PDIGAVYSGMGPD 81

Query: 64  SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQ-SSTVPH 122
                          +         ++ ++S  +  +     +GG R    S   +    
Sbjct: 82  YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDE 141

Query: 123 NTSFQVIPVSSSILCTLAGNAADCVYWLHSL-AKECKGY-ECKYRTGMTIRHAANLLVNM 180
              F +           +G+            +   K + E ++   + +  A ++ +  
Sbjct: 142 FNGFSL------YQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLT 195

Query: 181 VRK 183
           +++
Sbjct: 196 LKE 198

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.0 bits (184), Expect = 2e-16
 Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 7/187 (3%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
                +  +T   +  ++ +I C + G  AD    +     E   ++ KY   + +    
Sbjct: 55  VPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLC 114

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
             + ++ + Y    ++   P  L    ++   DE  GPQ+Y  D  G          G  
Sbjct: 115 KRIADISQVYT--QNAEMRP--LGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVK 170

Query: 235 AEYAQAILD--TDYRPDLSEEEAYALATSAIYHACRRDIHSGGC-VRLYKINGQGWQQVL 291
              + + L+     + D + E+    A + +      D       V +  +    ++ + 
Sbjct: 171 QTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILT 230

Query: 292 SRDVKDI 298
             ++   
Sbjct: 231 EAEIDAH 237

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 27/182 (14%), Positives = 48/182 (26%), Gaps = 22/182 (12%)

Query: 4   TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
            G T++  R  +  ++ T  +     L+ S  +    + +    C     V TG     +
Sbjct: 34  GGLTSVAVRGKDCAVIVTQKKVPDK-LLDSSTVTHLFKITENIGC-----VMTGMTADSR 87

Query: 64  SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV--- 120
           S  QR+   A   +  +            I+      +  VYT      P      +   
Sbjct: 88  SQVQRARYEAANWKYKYGYEIPVDMLCKRIA-----DISQVYTQNAEMRPLGCCMILIGI 142

Query: 121 -----PHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAAN 175
                P    ++  P                      L K+ K          T+  A  
Sbjct: 143 DEEQGPQV--YKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFE-QTVETAIT 199

Query: 176 LL 177
            L
Sbjct: 200 CL 201

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 73.9 bits (181), Expect = 4e-16
 Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 10/153 (6%)

Query: 128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY-RTGMTIRHAANLLVNMVRKYRT 186
           V  +   +     G   +      +           Y R  +T R  AN     +    T
Sbjct: 45  VSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT 104

Query: 187 GNHSSKIPNGLSFGTLMAAYDEIL---GPQLYMLDNTGLLIEGTKFCVG-SGAEYAQAIL 242
                           +A    +     PQLY +   G +++   F V     E     +
Sbjct: 105 EQP-----KPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAM 159

Query: 243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGG 275
              YR DL  E A  +A +A+      +     
Sbjct: 160 RESYRADLDLEAAVGIAVNALRQGGAGEGEKRN 192

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 4/28 (14%), Positives = 14/28 (50%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLI 31
           G + +   + +G++   ++ +TA   +
Sbjct: 18 RGRSVVVLTFRDGVLFVAENPSTALHKV 45

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.0 bits (178), Expect = 6e-16
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 17/186 (9%)

Query: 114 FSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
            S+  ++    S +   ++   +   +G   DC+     +    K Y+      MT    
Sbjct: 29  LSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAI 88

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
           A +L  ++   R                ++   DE     +Y  D  G     +    GS
Sbjct: 89  AAMLSTILYSRRFFP--------YYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGS 140

Query: 234 GAEYAQAILD---------TDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING 284
            +   Q +LD               LS + A  L       A  RD+++G  +R+  +  
Sbjct: 141 ASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTK 200

Query: 285 QGWQQV 290
           +G ++ 
Sbjct: 201 EGIREE 206

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSS 43
           G T L     +  I+A+D+R +    I ++   K  + +
Sbjct: 8  NGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLT 47

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 22/170 (12%), Positives = 47/170 (27%), Gaps = 18/170 (10%)

Query: 115 SQSSTVPHNTSFQVIPV--SSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRH 172
           +    V    + + +    +  +L   AG+ AD          + + Y    +       
Sbjct: 26  TFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELA 85

Query: 173 AANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVG 232
                  ++RK                   M          L       +  +     +G
Sbjct: 86  KEWRSDKVLRKLEA----------------MLIVMNQDTLLLVSGTGEVIEPDDGILAIG 129

Query: 233 SGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
           SG  YA A      +       A  +A +A+  A    +++   + L ++
Sbjct: 130 SGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEEL 179

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 5/34 (14%), Positives = 13/34 (38%)

Query: 5  GTTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
           TT    ++     ++ D + T    +V +   +
Sbjct: 5  ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTAR 38

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (169), Expect = 2e-14
 Identities = 26/189 (13%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 123 NTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVR 182
               +++ V + I  ++AG  AD     + + +EC      +   + +    +L+ +  +
Sbjct: 55  AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQ 114

Query: 183 KYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL 242
                    + P     G L+A YD+ +GP ++    +    +     +G+ ++ A+  L
Sbjct: 115 IPT--QRYGRRP--YGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYL 169

Query: 243 DTDYR--PDLSEEEAYALATSAIYHACRRDIHSGGC-VRLYKINGQGWQQVLSRD-VKDI 298
           +       + +  E       A+      +       V +  +       +   D V   
Sbjct: 170 ERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPF 229

Query: 299 ---YNDRKE 304
                +R +
Sbjct: 230 LEGLEERPQ 238

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 2/113 (1%)

Query: 4   TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQ 63
            G+ T+G +     +L    RA +      +K+             L            Q
Sbjct: 28  QGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQ 87

Query: 64  SYSQRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHP--VYTGGERCGPF 114
                            L   +   +Q               +  G +  GP 
Sbjct: 88  ECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPH 140

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 17/168 (10%)

Query: 115 SQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAA 174
           +  STV    + +V  +    +      +      L    +          T   +  A 
Sbjct: 21  TFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAK 80

Query: 175 NLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSG 234
           +   + V +                   +    +     +   +   +  +     +GSG
Sbjct: 81  DWRTDRVLRRLEA---------------LLLVADKENIFIISGNGEVIQPDDDAAAIGSG 125

Query: 235 AEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
             YA A      R   ++  A  +   A+  A    I++   + + ++
Sbjct: 126 GPYALAAAKALLRN--TDLSAREIVEKAMTIAGEICIYTNQNIVIEEV 171

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT L  R     ++  D + T    ++     K
Sbjct: 1  TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARK 33

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 62.1 bits (150), Expect = 2e-12
 Identities = 23/169 (13%), Positives = 49/169 (28%), Gaps = 18/169 (10%)

Query: 115 SQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHA 173
           S  +TV    + +V  + +  +L   AG  AD          E K    +     +    
Sbjct: 21  SLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF--ERKLEMHQGHLLKSAVEL 78

Query: 174 ANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGS 233
           A          +                 +   DE     +  + +     E     +GS
Sbjct: 79  AKDWRTDRALRKLEAM-------------LIVADEKESLIITGIGDVVQPEEDQILAIGS 125

Query: 234 GAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI 282
           G  YA +        + +E  A+ +   ++  A    + +     + ++
Sbjct: 126 GGNYALS--AARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL 172

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 5/33 (15%), Positives = 14/33 (42%)

Query: 6  TTTLGFRYPEGIILATDSRATANDLIVSQKLNK 38
          TT +  R    +++  D + +  + ++     K
Sbjct: 1  TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARK 33

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 4  TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQ 41
           GT  +G +    ++L  + R+T          +K  +
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSK 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.95
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.94
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.92
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	97.09
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	90.07
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	90.07
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	88.57
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	88.54
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	88.43
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	88.38
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	88.36
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	88.02
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	87.67
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	87.64
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	87.4
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	87.19
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	87.09
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	86.59
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	86.07
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	83.77
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	82.89

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-46  Score=330.13  Aligned_cols=200  Identities=43%  Similarity=0.752  Sum_probs=194.0

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||++||+|+||||||||+|.|+|.++.+++++|                                               
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~K-----------------------------------------------   33 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKK-----------------------------------------------   33 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCccc-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|+++|..+|++.+.+.++.+++.|++.++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (201)
T d1irul_          34 ------------------------------------------VIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNK   71 (201)
T ss_dssp             ------------------------------------------EEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      .+++++.+++++++++|.+++      +||+  +++|++|||+ ++|+||.+||+|++.+++++|+|+|+.+++++||+.
T Consensus        72 ~~~~~~~~a~~l~~~~~~~~~------~p~~--~~~lvaG~d~-~~~~l~~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~  142 (201)
T d1irul_          72 ERISVAAASKLLANMVYQYKG------MGLS--MGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRG  142 (201)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTT------SCCC--BEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTT
T ss_pred             CCCchhHHHHHHHHHhhhccC------CCce--EEEEEEEEec-CCceEEEEccCceEEEeeeEEecCchHHHHHHHHhh
Confidence            999999999999999999887      7987  5789999998 799999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHh
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRK  303 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~  303 (312)
                      |+++||+|||++++++||+.+.+||..++++++|++|+++|+++++++||+++.++++
T Consensus       143 ~~~~ms~eea~~l~~~~l~~~~~~d~~sg~~~~v~~i~~~G~~~i~~~ev~~~~~~~~  200 (201)
T d1irul_         143 YSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYS  200 (201)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEEEEEEEHHHHHHHHT
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEeCCceEEECHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999875

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-46  Score=332.79  Aligned_cols=204  Identities=38%  Similarity=0.682  Sum_probs=195.0

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+|+||||||+|+|+|+|.++.+++++|                                               
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~K-----------------------------------------------   33 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKR-----------------------------------------------   33 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcce-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|+++|..+|++.++++++.+++.|++.++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (212)
T d1rypl_          34 ------------------------------------------VIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK   71 (212)
T ss_dssp             ------------------------------------------EEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      .+++++.+++++++++|.++.      +|++  +..+++|+|++++|+||.+||+|++.++++.|+|+|+.+++++||+.
T Consensus        72 ~~~~~~~~a~~ls~~~~~~~~------~p~~--~~~~l~G~~~~~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~  143 (212)
T d1rypl_          72 ERISVAAASKILSNLVYQYKG------AGLS--MGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSN  143 (212)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTT------SCCC--BEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhcc------CCcc--eEeeeeEeecCCCCEEEEECCCceEEecceEEEccCcccchhHHHHh
Confidence            999999999999999998876      5665  45789999886789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      |+++||++||++++++||+.+.+||+.++++++|++|+++|+++++++||+++++++++++
T Consensus       144 ~~~~mt~~ea~~l~~~al~~~~~rd~~sg~~v~v~vi~~~g~~~~~~~ev~~~~~~~~~~~  204 (212)
T d1rypl_         144 YKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKVKEEE  204 (212)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEEEHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCceEEeCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999987554

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-45  Score=336.13  Aligned_cols=213  Identities=20%  Similarity=0.313  Sum_probs=202.9

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|.++|.++.++..+|                                           
T Consensus        27 v~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~K-------------------------------------------   63 (250)
T d1iruc_          27 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK-------------------------------------------   63 (250)
T ss_dssp             HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSS-------------------------------------------
T ss_pred             HhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccce-------------------------------------------
Confidence            3689999999999999999999999999998888888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|..+|++.+++.++.+++.|+
T Consensus        64 ----------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~   97 (250)
T d1iruc_          64 ----------------------------------------------IYKLNEDMACSVAGITSDANVLTNELRLIAQRYL   97 (250)
T ss_dssp             ----------------------------------------------EEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEECCCcEEEEeecccchHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      +.++.+++++.+++.+++++|.+++  ++++|||+  +++||+|||++++|+||.+||+|++.+++++|+|+|+.+++++
T Consensus        98 ~~~~~~i~~~~la~~l~~~~~~~~~--~~~~rP~~--~~~li~G~D~~~gp~Ly~~Dp~G~~~~~~~~a~G~gs~~a~~~  173 (250)
T d1iruc_          98 LQYQEPIPCEQLVTALCDIKQAYTQ--FGGKRPFG--VSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSM  173 (250)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTT--BSSCCCCC--EEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHH
T ss_pred             HHcCCCcchHHHHHHHHHHHHHHhh--hccCCcce--EEEEEEEEcCCCCCEEEEEcccccEeeeeEEEeCcChHHHHHH
Confidence            9999999999999999999999999  89999998  4689999998678999999999999999999999999999999


Q ss_pred             HHhhCCC-CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC----eEEeChhHHHHHHHHHhcCCC
Q psy14210        242 LDTDYRP-DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG----WQQVLSRDVKDIYNDRKEAPP  307 (312)
Q Consensus       242 Le~~y~~-~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G----~~~l~~~eI~~~l~~~~~~~~  307 (312)
                      ||++|++ +||++||++++++||+.++++|..++++++|++|++++    ++.++++||++++++++++..
T Consensus       174 Le~~y~~~~ms~eeai~la~~al~~~~~~d~~~~~~iei~ii~~~~~~~~~~~l~~~Ei~~~l~~~~e~~~  244 (250)
T d1iruc_         174 LKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEA  244 (250)
T ss_dssp             HHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHTTTT
T ss_pred             HHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCCeEEEEEEEcCCCceeEEECCHHHHHHHHHHHHHHhh
Confidence            9999985 89999999999999999999999999999999999976    788999999999999988765

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=2.4e-45  Score=323.48  Aligned_cols=198  Identities=25%  Similarity=0.415  Sum_probs=191.0

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+|+|.++.+++.+|                                               
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~K-----------------------------------------------   33 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKK-----------------------------------------------   33 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCccc-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|++||..+|++.++++++.+++.|++.++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (203)
T d1yarh1          34 ------------------------------------------LFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRR   71 (203)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      .+++++.++++++++++.+++      |||+  +++|+||+|+  +|+||.+||+|+++++++.|+|+|+.+++++||++
T Consensus        72 ~~~~~~~~a~~l~~~~~~~~~------~p~~--~~~lvaG~d~--~p~l~~~d~~G~~~~~~~~a~G~g~~~~~~~L~~~  141 (203)
T d1yarh1          72 VNMPIEAVATLLSNMLNQVKY------MPYM--VQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQ  141 (203)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEESS--SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhcc------CCcc--ceeEEEEEcC--CCeeEecCCccceecccccccCCCcHHHHHHHHHh
Confidence            999999999999999998887      8988  5689999986  69999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC-CCeEEeChhHHHHHHHHH
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING-QGWQQVLSRDVKDIYNDR  302 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk-~G~~~l~~~eI~~~l~~~  302 (312)
                      |+++||+|||++++++||+.+.+||..++++++|++|++ +|+++++++||+++++++
T Consensus       142 ~~~~~s~eea~~l~~~~l~~~~~~d~~~~~~v~v~ii~~~~g~~~l~~~ei~~~~~~~  199 (203)
T d1yarh1         142 YSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKL  199 (203)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCCEEECCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999996 699999999999999886

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4e-45  Score=320.89  Aligned_cols=201  Identities=29%  Similarity=0.462  Sum_probs=192.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|.+.|.++.+++.+|                                               
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~K-----------------------------------------------   33 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKK-----------------------------------------------   33 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccce-----------------------------------------------
Confidence            899999999999999999999999999999899                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|+++|..+|++.+.++++.+++.|++.++
T Consensus        34 ------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (202)
T d1j2qh_          34 ------------------------------------------IYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRE   71 (202)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecC-eeeEccChHHHHHHHHh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGT-KFCVGSGAEYAQAILDT  244 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~~Le~  244 (312)
                      .+++++.+++++++++|.+|+      +||+  +++|+||||+ .+|+||.+||+|++.++. +.|+|+|+.+++++||+
T Consensus        72 ~~~~~~~~a~~~~~~~~~~~~------~p~~--~~~lvaG~d~-~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~  142 (202)
T d1j2qh_          72 RKPTVRAIATLTSNLLNSYRY------FPYL--VQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLED  142 (202)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTT------SCCC--EEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHhhhcc------ccee--eEEEEEEEcC-CCceEEEEeCCCCeEeecceEEccCChHHHHHHHHh
Confidence            999999999999999999987      8988  5689999998 789999999999988764 88999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhc
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~  304 (312)
                      +|+++||+|||++++++||+.++++|+.++++++|++|+++|+++++++||+++++++++
T Consensus       143 ~~~~~ms~~ea~~l~~~al~~~~~~d~~~g~~v~v~~i~~~g~~~~~~~ei~~~l~~~~k  202 (202)
T d1j2qh_         143 RFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYSPEEVEQILAKFRK  202 (202)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEEECHHHHHHHHGGGTTC
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCEEEeCHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999998764

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.6e-45  Score=328.83  Aligned_cols=208  Identities=21%  Similarity=0.329  Sum_probs=199.0

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|.++|.++.++..+|                                           
T Consensus        28 i~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~K-------------------------------------------   64 (244)
T d1rypc_          28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEK-------------------------------------------   64 (244)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSS-------------------------------------------
T ss_pred             HhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccce-------------------------------------------
Confidence            3689999999999999999999999999999998899                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|+++++++++|+.+|++.+++.++.+++.|+
T Consensus        65 ----------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~   98 (244)
T d1rypc_          65 ----------------------------------------------LYKLNDKIAVAVAGLTADAEILINTARIHAQNYL   98 (244)
T ss_dssp             ----------------------------------------------EEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEcCCCeEEEEecccCcHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++.++++++.+++  ++++|||+  +++||||||+.++|+||.+||+|++.+++++|+|+|+.+++++
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~rP~~--~~~ll~G~d~~~gp~Ly~id~~Gs~~~~~~~a~G~g~~~a~~~  174 (244)
T d1rypc_          99 KTYNEDIPVEILVRRLSDIKQGYTQ--HGGLRPFG--VSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTL  174 (244)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHH--BSSCCCCC--EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHhhhhh--ccccCccc--eeEEEEEEecCCCceEEEecCCCcEeeeeeeeccchhHHHHHH
Confidence            9999999999999999999999999  88999988  5689999998678999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC------eEEeChhHHHHHHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG------WQQVLSRDVKDIYNDR  302 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G------~~~l~~~eI~~~l~~~  302 (312)
                      ||+.|+++||+|||++++++||+.+.+||..++++++|++|++++      ++.++++||++++.+.
T Consensus       175 Le~~~~~~ms~eeai~l~~~al~~a~~~d~~~~~~iei~ii~~~~~~~~~~~~~~~~~Ei~~~l~k~  241 (244)
T d1rypc_         175 LQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKT  241 (244)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHH
T ss_pred             HHhcccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCcccceeEEECCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999976      6779999999999875

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-45  Score=321.11  Aligned_cols=196  Identities=22%  Similarity=0.301  Sum_probs=187.5

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+|+|.++.+++.+|                                               
T Consensus         2 ~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~K-----------------------------------------------   34 (198)
T d1rypk_           2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDK-----------------------------------------------   34 (198)
T ss_dssp             CCEEEEECSSCEEEEEECCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             eEEEEEEECCEEEEEEcCCcccCCEeecCccce-----------------------------------------------
Confidence            799999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|+++|..+|++.+.+.++.+++.|+++++
T Consensus        35 ------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~   72 (198)
T d1rypk_          35 ------------------------------------------TRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIRED   72 (198)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------------EEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhC
Confidence                                                      89999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecC-CCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEI-LGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT  244 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~-~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~  244 (312)
                      .+++++.+++++++++|.+++    .+|||+  +++||||||+. ++|+||++||+|++.+++++++|+|+.+++++||+
T Consensus        73 ~~~~~~~~~~~i~~~~~~~~~----~~~P~~--~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~  146 (198)
T d1rypk_          73 YELSPQAVSSFVRQELAKSIR----SRRPYQ--VNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDH  146 (198)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTT----SSSCCC--EEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHh----cccccc--eEEEEEEEecCCCceEEEEecccccEEecceEEEeccchhhHHHHHh
Confidence            999999999999999999876    479988  56899999974 58999999999999999999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHH
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVK  296 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~  296 (312)
                      +|+++||+|||++++++||+.+.+||+.++++++|++|+++|+++++++|++
T Consensus       147 ~~~~~~~~eea~~l~~~~l~~~~~~d~~s~~~~~v~vi~~dG~~~~~~~~~~  198 (198)
T d1rypk_         147 HYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVDDFQAQ  198 (198)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEECCCSCC
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCeEEcchhccC
Confidence            9999999999999999999999999999999999999999999999998763

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-45  Score=321.58  Aligned_cols=197  Identities=22%  Similarity=0.368  Sum_probs=184.9

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+|+|.++.++..+|                                           
T Consensus         6 v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~k-------------------------------------------   42 (205)
T d1ryph_           6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDK-------------------------------------------   42 (205)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCC-------------------------------------------
T ss_pred             ccCcceEEEEEECCEEEEEECCccccCceeeccccce-------------------------------------------
Confidence            5789999999999999999999999999999998888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus        43 ----------------------------------------------i~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~   76 (205)
T d1ryph_          43 ----------------------------------------------LTRVHDKIWCCRSGSAADTQAIADIVQYHLELYT   76 (205)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEccCceEEeeccchhHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++ ++..+++.+++++|.++       +||+  +++|+||||+.++|+||++||.|++.++++.|+|+|+.+++++
T Consensus        77 ~~~~~~-~~~~~~~~~~~~~~~~~-------~p~~--~~~lvaG~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~  146 (205)
T d1ryph_          77 SQYGTP-STETAASVFKELCYENK-------DNLT--AGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGY  146 (205)
T ss_dssp             HHHSSC-CHHHHHHHHHHHHHHTT-------TTCC--EEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHH
T ss_pred             HHcCCc-cHHHHHHHHHHHHHhCc-------cCce--EEEEEEeecCCCCcEEEEECCCCcEEecCeEEeecCcHHHHHH
Confidence            999965 57889999999998754       5887  5789999998678999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE--eChhHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ--VLSRDVKD  297 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~--l~~~eI~~  297 (312)
                      ||+.|+++||+|||++++++||+.+++||+.++++++|++|+++|+++  +.++|+++
T Consensus       147 Le~~~~~~ms~~ea~~l~~~al~~a~~rD~~sg~~v~v~iitk~G~~~~~~~~~e~~~  204 (205)
T d1ryph_         147 CDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDEYEQ  204 (205)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECHHHHTC
T ss_pred             HHhhhhcccCHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEcCCceEEEecCcccccc
Confidence            999999999999999999999999999999999999999999999865  58899875

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-44  Score=327.20  Aligned_cols=208  Identities=16%  Similarity=0.215  Sum_probs=196.8

Q ss_pred             cCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCC
Q psy14210          4 TGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSP   83 (312)
Q Consensus         4 ~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (312)
                      +|+|+|||+++||||||+|+|+++ .++.++..+|                                             
T Consensus        29 ~g~T~igik~~dgVvlaad~r~~~-~l~~~~~~~K---------------------------------------------   62 (243)
T d1rypa_          29 TNINSLAVRGKDCTVVISQKKVPD-KLLDPTTVSY---------------------------------------------   62 (243)
T ss_dssp             TCCCEEEEECSSEEEEEEECCCCC-TTBCGGGCCS---------------------------------------------
T ss_pred             cCceEEEEEcCCEEEEEEeccccc-cccccCcccc---------------------------------------------
Confidence            588999999999999999999886 7888888888                                             


Q ss_pred             CCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210         84 PLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECK  163 (312)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~  163 (312)
                                                                  |++|++|++|+++|+.+|++.+.++++.+++.|++.
T Consensus        63 --------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~   98 (243)
T d1rypa_          63 --------------------------------------------IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYK   98 (243)
T ss_dssp             --------------------------------------------EEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------eEecCCCEEEEEecCcHHHHHHHHHHHHHHHHHHHH
Confidence                                                        999999999999999999999999999999999999


Q ss_pred             cCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHH
Q psy14210        164 YRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILD  243 (312)
Q Consensus       164 ~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le  243 (312)
                      ++.+++++.+++++++++|.+++  +++.|||+  +++|++|||++.+|+||.+||+|++.+++++|+|+|+.+++++||
T Consensus        99 ~~~~~~~~~~a~~ls~~~~~~~~--~~~~rP~~--v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le  174 (243)
T d1rypa_          99 YGYDMPCDVLAKRMANLSQIYTQ--RAYMRPLG--VILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLE  174 (243)
T ss_dssp             HSSCCCHHHHHHHHHHHHHHHHH--BTTSCCCS--CEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHhh--cccccCcc--ceEEEEEEccCCCCeEEEEcCCEEEEecceEEeCccHHHHHHHHH
Confidence            99999999999999999999999  88999998  468999999867899999999999999999999999999999999


Q ss_pred             hhCCC-------CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHHhcCC
Q psy14210        244 TDYRP-------DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       244 ~~y~~-------~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      ++|++       ++|++||++++++||+.+.++|. ++++++|++++++|+++++++||+++++.+++++
T Consensus       175 ~~~~~~~~~~~~~~s~eeav~la~~~l~~~~~~d~-~~~~iei~iitk~g~~~l~~eeI~~~l~~i~e~~  243 (243)
T d1rypa_         175 NHFKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKFFTLSAENIEERLVAIAEQD  243 (243)
T ss_dssp             HHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETTEEEECCHHHHHHHHHHHTTTC
T ss_pred             HHhhcccccccccccHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCCceEEeCHHHHHHHHHHHhccC
Confidence            99974       56999999999999999999995 7789999999999999999999999999998874

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-44  Score=326.41  Aligned_cols=213  Identities=21%  Similarity=0.334  Sum_probs=196.4

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|+++| ++..++++|                                            
T Consensus        24 ~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~K--------------------------------------------   58 (242)
T d1rype_          24 KLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEK--------------------------------------------   58 (242)
T ss_dssp             TTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCC--------------------------------------------
T ss_pred             HcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccce--------------------------------------------
Confidence            57999999999999999999999986 777887888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|+++++|+++|..+|++.++++++.+++.|++
T Consensus        59 ---------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   93 (242)
T d1rype_          59 ---------------------------------------------IVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNL   93 (242)
T ss_dssp             ---------------------------------------------EEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEcCCCEEEEEeecchhHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCC----CCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGN----HSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYA  238 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~----~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a  238 (312)
                      .++++++++.+++++++++|.+++..    ...+|||+  +++||+|||++++|+||.+||+|++.+++++|+|+|+.++
T Consensus        94 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~--~~~ii~G~D~~~~p~L~~idp~G~~~~~~~~a~G~gs~~~  171 (242)
T d1rype_          94 YYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFG--VALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGA  171 (242)
T ss_dssp             HHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCS--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHH
T ss_pred             HcCCCCchhHHHHHHHHHHHHHhccccccchhccccce--EEEEEEEeccccceEEEEEcCCCceeccceeecccchHHH
Confidence            99999999999999999999988721    12379988  5689999998678999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC-CCeEEeChhHHHHHHHHHhcCCCC
Q psy14210        239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING-QGWQQVLSRDVKDIYNDRKEAPPG  308 (312)
Q Consensus       239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk-~G~~~l~~~eI~~~l~~~~~~~~~  308 (312)
                      +++||++|+++||++||++++++||+.+.++|. +.++++|++|++ +|+++++++||+++++++++++.+
T Consensus       172 ~~~Le~~~~~~ms~~ea~~la~~~l~~~~~~~~-~~~~~~v~~i~~~~g~~~l~~~~i~~~~~~i~e~~~~  241 (242)
T d1rype_         172 QAELLNEWHSSLTLKEAELLVLKILKQVMEEKL-DENNAQLSCITKQDGFKIYDNEKTAELIKELKEKEAA  241 (242)
T ss_dssp             HHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCC-CTTSEEEEEEETTTEEEECCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHhccC-CCCceEEEEEECCCCeEECCHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998885 556899999987 699999999999999999887653

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=8.2e-44  Score=322.74  Aligned_cols=206  Identities=22%  Similarity=0.351  Sum_probs=193.1

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|.++|.+ ..++++|                                            
T Consensus        29 ~~G~t~Igik~~dgVvlaad~r~~~~~~-~~~~~~K--------------------------------------------   63 (243)
T d1j2pa_          29 KRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEK--------------------------------------------   63 (243)
T ss_dssp             HTSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCS--------------------------------------------
T ss_pred             HcCCCEEEEEECCEEEEEEecCccccCc-ccccccc--------------------------------------------
Confidence            5799999999999999999999999754 4566677                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|+++++|+++|..+|++.+.++++.+++.|++
T Consensus        64 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   98 (243)
T d1j2pa_          64 ---------------------------------------------IYKIDEHICAATSGLVADARVLIDRARIEAQINRL   98 (243)
T ss_dssp             ---------------------------------------------EEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EeecCCcEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      +++.+++++.+++.+++++|.+++  ++++|||+  +++|+||||+  +|+||.+||+|++.+++++|+|+|+.+++++|
T Consensus        99 ~~~~~~~~~~l~~~l~~~~~~~~~--~~~~rP~~--~~~il~G~D~--~p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~L  172 (243)
T d1j2pa_          99 TYDIPITVKELAKKICDFKQQYTQ--YGGVRPFG--VSLLIAGVNE--VPKLYETDPSGALLEYKATAIGMGRMAVTEFF  172 (243)
T ss_dssp             HSSSCCCHHHHHHHHHHHHHHTTS--BTTBCCCC--EEEEEEEESS--SEEEEEECTTCCEEEBSEEEESTTHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHhh--hccCCccc--eeEEEEEecC--CceEEEEeccCceeeeeEEEeCCCcHHHHHHH
Confidence            999999999999999999999999  89999988  5689999986  69999999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC--CeEEeChhHHHHHHHHHhcC
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ--GWQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~--G~~~l~~~eI~~~l~~~~~~  305 (312)
                      |+.|+++||+|||++++++||+.+.++|. +++++||++++++  ++++++++||++++++++++
T Consensus       173 e~~y~~~ms~eeai~la~~~l~~~~~~d~-~~~~iei~iv~~~~~~~~~l~~~ei~~~~~~~~e~  236 (243)
T d1j2pa_         173 EKEYRDDLSFDDAMVLGLVAMGLSIESEL-VPENIEVGYVKVDDRTFKEVSPEELKPYVERANER  236 (243)
T ss_dssp             HHHCCTTCCHHHHHHHHHHHHHHHHTSCC-CGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHHH
T ss_pred             HhhcccCCCHHHHHHHHHHHHHHHHhccc-CCCceEEEEEEeCCCcEEECCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996 4578999999874  79999999999999988654

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-43  Score=322.09  Aligned_cols=206  Identities=16%  Similarity=0.256  Sum_probs=192.4

Q ss_pred             CceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCC
Q psy14210          5 GTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPP   84 (312)
Q Consensus         5 g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (312)
                      |||+||++++||||||+|+|+++ .++.++..+|                                              
T Consensus        35 g~t~igIk~~dgVVlaad~r~~~-~~~~~~~~~K----------------------------------------------   67 (244)
T d1irua_          35 GLTSVAVRGKDCAVIVTQKKVPD-KLLDSSTVTH----------------------------------------------   67 (244)
T ss_dssp             CCEEEEEECSSEEEEEEECCCCC-SSBCGGGCCS----------------------------------------------
T ss_pred             CccEEEEEcCCEEEEEEeccccc-ccccCCccce----------------------------------------------
Confidence            57999999999999999999885 6666777777                                              


Q ss_pred             CCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         85 LSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                 ||+|++|++|+++|..+|++.+.++++.+++.|++.+
T Consensus        68 -------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~  104 (244)
T d1irua_          68 -------------------------------------------LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKY  104 (244)
T ss_dssp             -------------------------------------------EEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------------EEEecCCcEEEEecchHHHHHHHHHHHHHHHHHHHHc
Confidence                                                       9999999999999999999999999999999999999


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT  244 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~  244 (312)
                      +++++++.+++++++++|.+++  +++.|||+  +++||||||++++|+||.+||+|++.+++++|+|+|+..++++||+
T Consensus       105 ~~~~~v~~la~~l~~~~~~~t~--~~~~rP~~--v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~  180 (244)
T d1irua_         105 GYEIPVDMLCKRIADISQVYTQ--NAEMRPLG--CCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEK  180 (244)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHH--BSSBCCCS--EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHhc--ccccCccc--eeeEEEEEcCCCCcEEEEEcCCccEEecceEeccCchhHHHHHHHh
Confidence            9999999999999999999999  88999998  4689999998678999999999999999999999999999999999


Q ss_pred             hCC--CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC--eEEeChhHHHHHHHHHhcC
Q psy14210        245 DYR--PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG--WQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       245 ~y~--~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G--~~~l~~~eI~~~l~~~~~~  305 (312)
                      +|+  ++|+++||++++++||+.++++|. ++++++|++|++++  +++++++||++++..++++
T Consensus       181 ~~~~~~d~t~eeai~l~~~~l~~~~~~d~-~~~~iev~ii~~~~~~~~~l~~~ei~~~l~~~~~r  244 (244)
T d1irua_         181 KVKKKFDWTFEQTVETAITCLSTVLSIDF-KPSEIEVGVVTVENPKFRILTEAEIDAHLVALAER  244 (244)
T ss_dssp             HTTSCCCCCHHHHHHHHHHHHHHHTTCCC-CTTSEEEEEEETTEEEEEECCHHHHHHHHHHHHTC
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEEeCCCcEEECCHHHHHHHHHHHhcC
Confidence            994  589999999999999999999995 55789999999874  7999999999999999875

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=4.7e-44  Score=319.66  Aligned_cols=202  Identities=20%  Similarity=0.362  Sum_probs=190.2

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|++ +.++.++..+|                                           
T Consensus        19 v~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~K-------------------------------------------   54 (221)
T d1yara1          19 VKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEK-------------------------------------------   54 (221)
T ss_dssp             HTTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCS-------------------------------------------
T ss_pred             HhcCCcEEEEEeCCEEEEEEecccC-CcccccCccce-------------------------------------------
Confidence            3689999999999999999999987 57778887778                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|..+|++.+++.++.+++.|+
T Consensus        55 ----------------------------------------------i~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~   88 (221)
T d1yara1          55 ----------------------------------------------IQLIDDYVAAVTSGLVADARVLVDFARISAQQEK   88 (221)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEecCCceEEeeeccchHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      +.++++++++.+++.++.+++.+++  ++++|||+  +++|+||||+ ++|+||++||+|++.+++++|+|+|+.+++++
T Consensus        89 ~~~~~~~~~~~l~~~~a~~~~~~~~--~~~~rP~~--~~~li~G~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~  163 (221)
T d1yara1          89 VTYGSLVNIENLVKRVADQMQQYTQ--YGGVRPYG--VSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSF  163 (221)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTT--BTTBCCCC--EEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHhh--hccCCCcc--eEEEEEEEec-CCCeEEEEcCCccEEEeeEEEECCchHHHHHH
Confidence            9999999999999999999999999  88999988  5689999998 79999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC-CCeEEeChhHHHHHH
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING-QGWQQVLSRDVKDIY  299 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk-~G~~~l~~~eI~~~l  299 (312)
                      ||++|+++||++||++++++||+.++++| .+.++++|++|++ +++++++++||+++|
T Consensus       164 Le~~~~~~ms~~ea~~la~~~l~~~~~~~-~~~~~~ei~~i~~~~~~r~l~~~ei~~~l  221 (221)
T d1yara1         164 LEREYKENLPEKEAVTLGIKALKSSLEEG-EELKAPEIASITVGNKYRIYDQEEVKKFL  221 (221)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHTSCSS-CCCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred             HHHHhhccccHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEcCCCEEECCHHHHHHhC
Confidence            99999999999999999999999998877 5678999999997 579999999999864

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-44  Score=326.11  Aligned_cols=214  Identities=18%  Similarity=0.225  Sum_probs=200.6

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.||||+|||+++||||||+|+|++.|.++.+++++|                                           
T Consensus         5 i~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~K-------------------------------------------   41 (233)
T d1ryp2_           5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVER-------------------------------------------   41 (233)
T ss_dssp             CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCC-------------------------------------------
T ss_pred             ccccceEEEEEECCEEEEEECCCcccCCeeecCCcce-------------------------------------------
Confidence            5689999999999999999999999999999999888                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|..+|++.+.+.++.+++.|+
T Consensus        42 ----------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~   75 (233)
T d1ryp2_          42 ----------------------------------------------LIPVGDNTVVGISGDISDMQHIERLLKDLVTENA   75 (233)
T ss_dssp             ----------------------------------------------EEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999998


Q ss_pred             hhc-----CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChH
Q psy14210        162 CKY-----RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAE  236 (312)
Q Consensus       162 ~~~-----g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~  236 (312)
                      +.+     +.+++++.+++++++++|.++.    .+|||+  +++||+|||++++|+||.+||+|++.+++++|+|+|+.
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~l~~~~y~~~~----~~~P~~--~~~liaG~d~~g~~~ly~~d~~G~~~~~~~~a~G~g~~  149 (233)
T d1ryp2_          76 YDNPLADAEEALEPSYIFEYLATVMYQRRS----KMNPLW--NAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH  149 (233)
T ss_dssp             TTCTTTTTTTSCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred             HhhCCCCCCcccCHHHHHHHHHHHHHhhcc----ccCCce--eEEEEEEEcCCCCeEEEEEcCCCcEEeeeeEEecCccH
Confidence            776     5678999999999999987665    479998  56899999986778999999999999999999999999


Q ss_pred             HHHHHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCCCCCC
Q psy14210        237 YAQAILDTDYR-----PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAPPGGG  310 (312)
Q Consensus       237 ~a~~~Le~~y~-----~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~~~~~  310 (312)
                      +++++||+.|+     ++||+|||++++++||+.+++||+.++++++|++|++| |++++++++|+++-|.+++..+|-+
T Consensus       150 ~a~~~Le~~~~~~~~~~~ms~eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g~~~~~~~~ie~~~~~~a~~~~~~~  229 (233)
T d1ryp2_         150 MANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG  229 (233)
T ss_dssp             HHHHHHTTTCCSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSCCCGGGGGCCSSS
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCCEEECChhcchhhhhhHhhhccCcC
Confidence            99999999998     78999999999999999999999999999999999997 7999999999999999999988865

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-43  Score=322.24  Aligned_cols=205  Identities=20%  Similarity=0.354  Sum_probs=190.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+||++++||||||+|+|++++ ++.+++.+|                                           
T Consensus        28 v~~G~tvvgi~~~dgVvlaad~r~~~~-~~~~~~~~k-------------------------------------------   63 (250)
T d1rypb_          28 VKQGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSK-------------------------------------------   63 (250)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCS-SBCGGGCCS-------------------------------------------
T ss_pred             HHcCCCEEEEEeCCEEEEEEecccCCc-cccccccce-------------------------------------------
Confidence            368999999999999999999999875 456677777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhh-hh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECK-GY  160 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~-~~  160 (312)
                                                                    |++|++|++|+++|..+|++.++++++.+++ .|
T Consensus        64 ----------------------------------------------i~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y   97 (250)
T d1rypb_          64 ----------------------------------------------VSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSY   97 (250)
T ss_dssp             ----------------------------------------------SEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred             ----------------------------------------------eEeccCCEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence                                                          8999999999999999999999999999986 58


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      +..++.+++++.+++.++++++.+++  +++.|||++  ++||+|||+++||+||++||.|++.+++++|+|+|+.++++
T Consensus        98 ~~~~~~~~~~~~la~~~~~~~~~~~~--~~~~rp~~v--~~li~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~  173 (250)
T d1rypb_          98 KRIYGEYPPTKLLVSEVAKIMQEATQ--SGGVRPFGV--SLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKT  173 (250)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHTTT--SBTBCCCCE--EEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHHHhh--hcCCcCeeE--EEEEEEecCCCCCEEEEEcCcEEEEEeeEEecCcchHHHHH
Confidence            99999999999999999999999999  888999984  68999999867899999999999999999999999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC----------------eEEeChhHHHHHHHH
Q psy14210        241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG----------------WQQVLSRDVKDIYND  301 (312)
Q Consensus       241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G----------------~~~l~~~eI~~~l~~  301 (312)
                      +||++|+++||++||++++++||+.+.++|. ++.+++|++|++++                +++++++||+++++.
T Consensus       174 ~Le~~~~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~vi~~~~~~~~~~~~v~~~~~~~fr~ls~eei~~~l~~  249 (250)
T d1rypb_         174 FLEKRWNDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEA  249 (250)
T ss_dssp             HHHHHCCTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTT
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEEeCCCcccccccccccccCCceEECCHHHHHHHHHh
Confidence            9999999999999999999999999999984 78999999999875                789999999999875

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.3e-44  Score=314.35  Aligned_cols=195  Identities=26%  Similarity=0.429  Sum_probs=186.1

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+|+|.++.+++++|                                               
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~K-----------------------------------------------   33 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDK-----------------------------------------------   33 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcce-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|++|++++++|..+|++.+.+.++.+++.|+++++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~   71 (202)
T d1iruh_          34 ------------------------------------------LTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELN   71 (202)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------------EEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      .+++++.+++++++++|.++       +||+  +++|++|||+.++|+||.+||.|++.++++.|+|+|+.+++++|++.
T Consensus        72 ~~~~~~~~a~~l~~~l~~~~-------~p~~--~~~lvaG~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~L~~~  142 (202)
T d1iruh_          72 EPPLVHTAASLFKEMCYRYR-------EDLM--AGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDAT  142 (202)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT-------TTCC--EEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhc-------ccee--EEEEEEEeecCCCcEEEEECCCCceeecceeEEeCCHHHHHHHHHHh
Confidence            99999999999999999865       4877  56899999987789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE--eChhHHHHH
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ--VLSRDVKDI  298 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~--l~~~eI~~~  298 (312)
                      |+++||++||++++++||+.+.+||+.++++++|++|+++|+++  ++++||+++
T Consensus       143 ~~~~~~~~ea~~l~~~al~~a~~rD~~sg~~i~v~vi~~~G~~~~~~~~d~~~~~  197 (202)
T d1iruh_         143 YREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKF  197 (202)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCC
T ss_pred             hccCCcHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeCCCeEEEEcCHHHhhhh
Confidence            99999999999999999999999999999999999999999865  899988654

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.6e-44  Score=320.35  Aligned_cols=203  Identities=21%  Similarity=0.383  Sum_probs=189.5

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+||++++||||||+|+|.+.+ ++.++..+|                                            
T Consensus        25 ~~G~t~vgik~~dgVvlaad~~~~~~-~~~~~~~~K--------------------------------------------   59 (234)
T d1irue_          25 KLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEK--------------------------------------------   59 (234)
T ss_dssp             TTSCCEEEEEETTEEEEEEECCCCCT-TBCTTSCCS--------------------------------------------
T ss_pred             HcCCCEEEEEeCCEEEEEEecCccCC-CcccCcccC--------------------------------------------
Confidence            57999999999999999999999885 556777777                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|++|++|+++|..+|++.+++.++.+++.|++
T Consensus        60 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   94 (234)
T d1irue_          60 ---------------------------------------------IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWF   94 (234)
T ss_dssp             ---------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEccCcEEEEEeeccchHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCC-----CCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSS-----KIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEY  237 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~-----~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~  237 (312)
                      .++++++++.+++++++++|.+++  +.+     .|||+  +++|+||||+ +||+||.+||+|++.+++++|+|+|+.+
T Consensus        95 ~~~~~i~~~~la~~i~~~~~~~t~--~~~~~~~~~rP~~--~~~il~G~D~-~gp~Ly~idp~G~~~~~~~~a~G~gs~~  169 (234)
T d1irue_          95 TYNETMTVESVTQAVSNLALQFGE--EDADPGAMSRPFG--VALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEG  169 (234)
T ss_dssp             HHSSCCCHHHHHHHHHTTTTCBCS--TTCCSSCBSSCCC--EEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHH
T ss_pred             hhCCCCCHHHHHHHHHHHHHHHhh--cccccccccccce--EEEEEEEEcC-CCCEEEEEecCcccceeeeEEeCCchHH
Confidence            999999999999999999999998  544     79998  5689999998 7899999999999999999999999999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHH
Q psy14210        238 AQAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYND  301 (312)
Q Consensus       238 a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~  301 (312)
                      ++++||+.|+++|++|||++++++||+.+.++| .+++++||++|+++ ++++++++||++++++
T Consensus       170 ~~~~Le~~~~~~~~~eeai~~a~~al~~~~~~~-~~~~~iei~ii~~~~~~k~l~~~ei~~~l~~  233 (234)
T d1irue_         170 AQSSLQELYHKSMTLKEAIKSSLIILKQVMEEK-LNATNIELATVQPGQNFHMFTKEELEEVIKD  233 (234)
T ss_dssp             HHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSC-CCTTSEEEEEECSSSCCEECCHHHHHHHHTT
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcc-CCCCCEEEEEEECCCCEEECCHHHHHHHHHh
Confidence            999999999999999999999999999998877 57788999999985 8999999999999875

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-43  Score=318.01  Aligned_cols=204  Identities=19%  Similarity=0.316  Sum_probs=192.8

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|.++|. +.++..+|                                            
T Consensus        29 ~~G~tvigik~~dgVvlaaD~r~~~~~-~~~~~~~k--------------------------------------------   63 (233)
T d1irub_          29 AGGAPSVGIKAANGVVLATEKKQKSIL-YDERSVHK--------------------------------------------   63 (233)
T ss_dssp             HTSCCEEEEECSSCEEEEEECCCCCSS-BCSTTCCS--------------------------------------------
T ss_pred             HcCCCEEEEEeCCEEEEEEeCCcccCC-ccccccce--------------------------------------------
Confidence            589999999999999999999999976 45777777                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|+++++|+++|..+|++.++++++.+++.|++
T Consensus        64 ---------------------------------------------i~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   98 (233)
T d1irub_          64 ---------------------------------------------VEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYL   98 (233)
T ss_dssp             ---------------------------------------------SEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEecCceEEEEeccchHHHHHHHHHHHHHHHHHH
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      +++++++++.+++.++++++.+++  +...|||+  +.++++|+|+ ++|+||.+||+|++.++++.|+|+|+.+++++|
T Consensus        99 ~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~p~~--~~~li~g~d~-~~~~ly~id~~G~~~~~~~~a~G~gs~~~~~~L  173 (233)
T d1irub_          99 VYQEPIPTAQLVQRVASVMQEYTQ--SGGVRPFG--VSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFL  173 (233)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTT--SBTBCCCS--EEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred             HhCCCCCHHHHHHHHHHHHHHHhh--ccccccce--EEEeeeeccc-CCceEEEEcCCcceEeccceecCCcHHHHHHHH
Confidence            999999999999999999999998  88899988  4679999997 899999999999999999999999999999999


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHHHHHH
Q psy14210        243 DTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDIYNDR  302 (312)
Q Consensus       243 e~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~l~~~  302 (312)
                      |+.|+++||+|||++++++||+.++++|. ++++++|++|+++|+++++++||++++..+
T Consensus       174 e~~~~~~ms~eea~~l~~~~L~~~~~~d~-~~~~vev~ii~~~g~~~l~~~eI~~~l~~i  232 (233)
T d1irub_         174 EKRYNEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGFRRLTPTEVKDYLAAI  232 (233)
T ss_dssp             HHHCCTTCCHHHHHHHHHHHHHTTCCSCC-CSSSEEEEEEETTEEEECCHHHHHHHHTTC
T ss_pred             HhhcccCccHHHHHHHHHHHHHHHHhccC-CCCcEEEEEEeCCCeEECCHHHHHHHHHHh
Confidence            99999999999999999999999999997 567899999999999999999999999764

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-43  Score=315.88  Aligned_cols=207  Identities=15%  Similarity=0.267  Sum_probs=194.4

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|.+++.++.+++.+|                                            
T Consensus        26 ~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~K--------------------------------------------   61 (241)
T d1rypd_          26 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK--------------------------------------------   61 (241)
T ss_dssp             TTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCS--------------------------------------------
T ss_pred             HcCCCEEEEEeCCEEEEEEEccccccCccccccccc--------------------------------------------
Confidence            579999999999999999999999988888888888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|++|++|+++|+.+|++.+++.++.+++.|++
T Consensus        62 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   96 (241)
T d1rypd_          62 ---------------------------------------------VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRL   96 (241)
T ss_dssp             ---------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEeCCCEEEEeeeccchHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecC-CCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEI-LGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~-~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      +++++++++.+++++++++|.+++  ++++|||+  +++|+||||+. ++|+||.+||+|++.+++++|+|+|+.+++++
T Consensus        97 ~~~~~i~~~~la~~i~~~~~~~t~--~~~~rP~~--v~~li~G~d~~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~~~~~  172 (241)
T d1rypd_          97 TLEDPVTVEYLTRYVAGVQQRYTQ--SGGVRPFG--VSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREF  172 (241)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTS--STTBCCCS--EEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred             HcCCCCCHHHHHHHHHHHHHHHhh--ccccCccc--ceEEEEEEccccCcceEEEecCCEEEEeeCeEEECcCHHHHHHH
Confidence            999999999999999999999999  88999998  46899999964 58999999999999999999999999999999


Q ss_pred             HHhhCCC---CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcC
Q psy14210        242 LDTDYRP---DLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       242 Le~~y~~---~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~  305 (312)
                      ||+.|++   +||++||++++++||+.+.++   ++.+++|++++++ ++++++++||++++..++++
T Consensus       173 Le~~~~~~~~~~t~~e~i~lal~al~~~~~~---~~~~iei~ii~~d~~~~~l~~~ei~~~l~~i~~~  237 (241)
T d1rypd_         173 LEKNYDRKEPPATVEECVKLTVRSLLEVVQT---GAKNIEITVVKPDSDIVALSSEEINQYVTQIEQE  237 (241)
T ss_dssp             HHTTCCTTSCCCSHHHHHHHHHHHHHHHHCS---CSTTEEEEEEETTTEEEECCHHHHHHHHHHHTHH
T ss_pred             HHHhhhcccCCCCHHHHHHHHHHHHHHHhcC---CCCcEEEEEEECCCCEEECCHHHHHHHHHHHHHH
Confidence            9999965   699999999999999998754   4679999999996 79999999999999998765

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-43  Score=320.56  Aligned_cols=209  Identities=16%  Similarity=0.262  Sum_probs=192.8

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.+|||+|||+++||||||+|+|+++ .++.++..+|                                           
T Consensus        30 v~~G~t~VGik~~dgVvlaad~~~~~-~~~~~~~~~K-------------------------------------------   65 (245)
T d1irug_          30 VENSSTAIGIRCKDGVVFGVEKLVLS-KLYEEGSNKR-------------------------------------------   65 (245)
T ss_dssp             HHTSCCEEEEECSSBEEEEEEEECSC-TTBCTTTTCC-------------------------------------------
T ss_pred             HHcCCcEEEEEeCCEEEEEEeccccc-cccccCccce-------------------------------------------
Confidence            36899999999999999999999988 4556777777                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    ||+|++|++|+++|+.+|++.++++++.+++.|+
T Consensus        66 ----------------------------------------------i~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~   99 (245)
T d1irug_          66 ----------------------------------------------LFNVDRHVGMAVAGLLADARSLADIAREEASNFR   99 (245)
T ss_dssp             ----------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEcCCCEEEEeccCchhHHHHHHHHHHHHHHHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ++++++++++.+++++++++|.+++  ++++|||+  +++||||||++++|+||.+||+|++.+++++|+|+|+..++++
T Consensus       100 ~~~g~~i~~~~la~~la~~~~~~t~--~~~~rP~~--vs~li~G~D~~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~a~~~  175 (245)
T d1irug_         100 SNFGYNIPLKHLADRVAMYVHAYTL--YSAVRPFG--CSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTE  175 (245)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTS--BSSBCCCS--EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHhhc--cccccccc--eEEEEEEEcCCCCceEEEEcCCceEEeeeEEEECCccHHHHHH
Confidence            9999999999999999999999999  89999998  5689999997678999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC--CCeEEeChhHHHHHHHHHhc
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING--QGWQQVLSRDVKDIYNDRKE  304 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk--~G~~~l~~~eI~~~l~~~~~  304 (312)
                      ||+.|+++||.+||++++++||+.+.+++..++.+++|++|++  ++++++.++|+.+.+.++++
T Consensus       176 Le~~~~~dmt~eea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~~~~~~~~~~~e~~~~~~~~~~  240 (245)
T d1irug_         176 IEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAK  240 (245)
T ss_dssp             HTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEecCCCeEEEChHHHHHHHHHHHH
Confidence            9999999999999999999999999988777778899999987  47888888888887776653

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-43  Score=318.01  Aligned_cols=207  Identities=16%  Similarity=0.314  Sum_probs=191.2

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|++ +.++.++..+|                                            
T Consensus        26 ~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~K--------------------------------------------   60 (243)
T d1irud_          26 KKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRK--------------------------------------------   60 (243)
T ss_dssp             HTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCS--------------------------------------------
T ss_pred             hcCCCEEEEEeCCEEEEEEecccc-CcccCCCcccc--------------------------------------------
Confidence            589999999999999999999966 78999988888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|+++++|++||+.+|++.+++.++.+++.|++
T Consensus        61 ---------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   95 (243)
T d1irud_          61 ---------------------------------------------ICALDDNVCMAFAGLTADARIVINRARVECQSHRL   95 (243)
T ss_dssp             ---------------------------------------------EEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEECCCCEEEEEEEchhhHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      +++.+++++.+++++++++|.+++  ++++|||++  ++||+|||++++|+||.+||+|++.+++++|+|+|+..++++|
T Consensus        96 ~~~~~i~v~~la~~ls~~~~~~t~--~~~~rp~~v--~~li~G~D~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~a~~~L  171 (243)
T d1irud_          96 TVEDPVTVEYITRYIASLKQRYTQ--SNGRRPFGI--SALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFL  171 (243)
T ss_dssp             HSSSCCCHHHHHHHHHHHHHHTTS--BTTBCCCCE--EEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred             hcCCCccHHHHHHHHHHHHHHHHh--cccCCccce--EEEEEEEcCCCCCEEEEecCcEEEEeccEEEECCChHHHHHHH
Confidence            999999999999999999999999  999999985  6899999976789999999999999999999999999999999


Q ss_pred             HhhCCCCC--CHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHHHHHhcCC
Q psy14210        243 DTDYRPDL--SEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       243 e~~y~~~m--s~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      |++|+++|  +.++++++++++|...   +..++.+++|++|+++ ++++++++||++++..+++++
T Consensus       172 ek~~~~~~~~~~~~~i~~ai~~l~~~---~~~~~~~vei~ii~k~~~~~~l~~~eI~~~l~~i~~~~  235 (243)
T d1irud_         172 EKNYTDEAIETDDLTIKLVIKALLEV---VQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK  235 (243)
T ss_dssp             TTTCCSSTTCSHHHHHHHHHHHHHTT---SCTTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTT
T ss_pred             HHhcccCCCccHHHHHHHHHHHHHHH---hcCCCCcEEEEEEECCCCEEECCHHHHHHHHHHHHhhh
Confidence            99999988  7777888877777654   4456789999999986 899999999999999987654

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.5e-43  Score=312.31  Aligned_cols=194  Identities=27%  Similarity=0.349  Sum_probs=184.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+|+||||||+|+|.|+|.++.+++++|                                               
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~K-----------------------------------------------   33 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSK-----------------------------------------------   33 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCccc-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|++|++|+++|..+|++.+.+.++.+++.|+++++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~   71 (220)
T d1irui_          34 ------------------------------------------IHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTG   71 (220)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------------------------EEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      .+++++.+++++++++|.++       +|++  +++|+||||+ ++|+||++||.|++.++++.|+|+|+.+++++|++.
T Consensus        72 ~~~~~~~~a~~l~~~~y~~~-------~p~~--~~~ivaG~D~-~g~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L~~~  141 (220)
T d1irui_          72 RLPRVVTANRMLKQMLFRYR-------GYIG--AALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDK  141 (220)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHhhhhhcc-------cccc--eeEEEEEEeC-CCcEEEEEeCCCcEEEeeEEEEccccHHHHHHHHHh
Confidence            99999999999999998754       5766  5789999998 789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHHHH
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVKDI  298 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~~~  298 (312)
                      |+++||++||++++++||+.+.+||+.++++++|++|+++|++++.+.++++-
T Consensus       142 ~~~~~s~~ea~~l~~~al~~~~~~D~~sg~~i~i~vitkdg~~~~~~~~~~~~  194 (220)
T d1irui_         142 FRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNK  194 (220)
T ss_dssp             CCTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEECCSEEECCCC
T ss_pred             cccCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEECCCeEEeCcccccch
Confidence            99999999999999999999999999999999999999999999988776553

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-43  Score=317.43  Aligned_cols=174  Identities=16%  Similarity=0.265  Sum_probs=164.7

Q ss_pred             EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEe
Q psy14210        128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD  207 (312)
Q Consensus       128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D  207 (312)
                      ||+|+++++|++||+.+|++.+++.++.+++.|+++++++++++.+++.++++.|.+++  ++++|||+  +++||||||
T Consensus        60 I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~y~~--~~~~rP~~--v~~il~G~D  135 (238)
T d1iruf_          60 ILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ--RYGRRPYG--VGLLIAGYD  135 (238)
T ss_dssp             EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH--BTTCCCCC--EEEEEEEEE
T ss_pred             EEEeCCceEEEEeccchHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHhh--ccCCCccc--ceEEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999  88999998  468999999


Q ss_pred             cCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEEEC
Q psy14210        208 EILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTDYRPDL--SEEEAYALATSAIYHACRRDI-HSGGCVRLYKING  284 (312)
Q Consensus       208 ~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~y~~~m--s~eEAi~la~kaL~~a~~rD~-~sg~~ieI~iItk  284 (312)
                      + +||+||++||+|++.+++++|+|+|+.+++++||++|+++|  +++||++++++||+.++.+|. .++.+|+|++|++
T Consensus       136 ~-~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Lek~~~~~~~~~~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k  214 (238)
T d1iruf_         136 D-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGK  214 (238)
T ss_dssp             T-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEET
T ss_pred             C-CCceEEEEcCCCCEEeeeeEEECCCchhhHHHHHhhcccccCCCHHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeC
Confidence            8 78999999999999999999999999999999999999854  999999999999999886553 5788999999999


Q ss_pred             C-CeEEeChhHHHHHHHHHhcCC
Q psy14210        285 Q-GWQQVLSRDVKDIYNDRKEAP  306 (312)
Q Consensus       285 ~-G~~~l~~~eI~~~l~~~~~~~  306 (312)
                      + ++++++++||++++++++++|
T Consensus       215 ~~~~~~l~~~ei~~~l~~i~ek~  237 (238)
T d1iruf_         215 DLEFTIYDDDDVSPFLEGLEERP  237 (238)
T ss_dssp             TEEEEEECSGGGHHHHTTCCCCC
T ss_pred             CCCEEECCHHHHHHHHHHHHhCc
Confidence            8 699999999999999998876

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-42  Score=310.36  Aligned_cols=208  Identities=24%  Similarity=0.285  Sum_probs=189.5

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+||++++||||||+|+|+++|.++ .++.+|                                            
T Consensus        28 ~~G~t~igik~~dgVvlaad~~~~~~~~~-~~~~~K--------------------------------------------   62 (244)
T d1rypg_          28 ENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVK--------------------------------------------   62 (244)
T ss_dssp             HTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCC--------------------------------------------
T ss_pred             HcCCCEEEEEeCCEEEEEEecccCCCCcc-ccccce--------------------------------------------
Confidence            57999999999999999999999997544 555667                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   |++|++|++|+++|+.+|++.++++++.+++.|++
T Consensus        63 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   97 (244)
T d1rypg_          63 ---------------------------------------------IQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKK   97 (244)
T ss_dssp             ---------------------------------------------CEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEccCceEEEEccchhhHHHHHHHHHHHHHHHHH
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      .++++++++.+++.+++++|.+++  ++++|||++  ++|+||||+ ++|+||.+||+|++.+++++|+|+|+..++++|
T Consensus        98 ~~~~~~~~~~la~~~~~~~~~~t~--~~~~RP~~~--~~iiaG~D~-~gp~Ly~idp~Gs~~~~~~~a~G~gs~~~~~~L  172 (244)
T d1rypg_          98 LYKTPIPIPAFADRLGQYVQAHTL--YNSVRPFGV--STIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAEL  172 (244)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHTTS--CTTBCCCCE--EEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHHhhc--ccccCCceE--EEEEEEEeC-CCCEEEEEcCCccEEecCeEecCCccHHHHHHH
Confidence            999999999999999999999999  999999985  679999998 799999999999999999999999999999999


Q ss_pred             Hh---hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEEC---CCe-EEeChhHHHHHHHHHhcC
Q psy14210        243 DT---DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKING---QGW-QQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       243 e~---~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk---~G~-~~l~~~eI~~~l~~~~~~  305 (312)
                      |+   .|+++||+|||++++++||+.+.+++..++.+++|++++.   +++ +..+.++++++++..+++
T Consensus       173 ek~~~~~~~~mt~eeai~la~~~L~~~~~~~~~~~~~iev~ii~~~~~~~~~~~~~~e~~~~~~~~~~~~  242 (244)
T d1rypg_         173 EKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKE  242 (244)
T ss_dssp             HHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHHHHT
T ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEEEcCCCeEEECCHHHHHHHHHHHHHh
Confidence            96   6999999999999999999999988887888999999974   455 445667777777776654

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.2e-41  Score=303.03  Aligned_cols=206  Identities=28%  Similarity=0.327  Sum_probs=190.0

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|+|+|.++.+++++|                                               
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~K-----------------------------------------------   33 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEK-----------------------------------------------   33 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcce-----------------------------------------------
Confidence            899999999999999999999999999999888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|++|++|+++|..+|++.+.++++.+++.|++.++
T Consensus        34 ------------------------------------------I~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   71 (224)
T d1q5qh_          34 ------------------------------------------VYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG   71 (224)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEe-----cCCCCeEEEEcCCceEEec--CeeeEccChHHH
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYD-----EILGPQLYMLDNTGLLIEG--TKFCVGSGAEYA  238 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D-----~~~gp~Ly~iDpsGs~~e~--~~~AiGsGs~~a  238 (312)
                      .++++..+++++++++|.+++   ...+|++  +.++++|+|     ...+|+||.+||.|++.++  ++.|+|+|+.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a  146 (224)
T d1q5qh_          72 VPLTFDGKANRLASMVRGNLG---AAMQGLA--VVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFA  146 (224)
T ss_dssp             SCCCHHHHHHHHHHHHHTTHH---HHTTTCC--EEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHH
T ss_pred             CCccHHHHHHHHHHHHHHhhc---ccccCcc--ceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHH
Confidence            999999999999999998876   2357766  356776665     4468999999999999877  579999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc-------EEEEEEECCCeEEeChhHHHHHHHHHhcC
Q psy14210        239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGC-------VRLYKINGQGWQQVLSRDVKDIYNDRKEA  305 (312)
Q Consensus       239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~-------ieI~iItk~G~~~l~~~eI~~~l~~~~~~  305 (312)
                      +++||++|+++||++||++++++||+.+++||..+|++       +++++++++|+++++++|++++++++.++
T Consensus       147 ~~~Le~~~~~~mt~~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g~~~l~~~ei~~~~~~~~~~  220 (224)
T d1q5qh_         147 KSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAE  220 (224)
T ss_dssp             HHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccCCHHHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCcEEEcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999874       78999999999999999999999988654

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.7e-41  Score=296.96  Aligned_cols=192  Identities=20%  Similarity=0.241  Sum_probs=180.4

Q ss_pred             CcccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCcccccccccccccccc
Q psy14210          1 MFITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHF   80 (312)
Q Consensus         1 ~~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (312)
                      |-.+|||++||+++||||||||+|.|+|.++.+++++|                                          
T Consensus         3 ~~~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~K------------------------------------------   40 (204)
T d1iruj_           3 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQK------------------------------------------   40 (204)
T ss_dssp             TTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCC------------------------------------------
T ss_pred             eeeCCceEEEEEECCEEEEEECCCcccCCeeEcCcccE------------------------------------------
Confidence            44679999999999999999999999999999999999                                          


Q ss_pred             CCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhh
Q psy14210         81 LSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGY  160 (312)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~  160 (312)
                                                                     ||+|++|++|+++|..+|++.+.++++.+++.|
T Consensus        41 -----------------------------------------------i~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~   73 (204)
T d1iruj_          41 -----------------------------------------------IFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLY   73 (204)
T ss_dssp             -----------------------------------------------EEECSTTEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------------------EEEeCCCeEEEeccCchHHHHHHHHHHHhhhhh
Confidence                                                           899999999999999999999999999999999


Q ss_pred             hhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCC-CCeEEEEcCCceEEecC-eeeEccChHHH
Q psy14210        161 ECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEIL-GPQLYMLDNTGLLIEGT-KFCVGSGAEYA  238 (312)
Q Consensus       161 ~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~-gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a  238 (312)
                      ++.++.+++++.+++++++++|.+++      +||+  +++||||||+++ +|.+|.+|+.|...++. +.++|+|+.++
T Consensus        74 ~~~~~~~~~~~~~a~~l~~~~~~~~~------~p~~--~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~  145 (204)
T d1iruj_          74 ELKEGRQIKPYTLMSMVANLLYEKRF------GPYY--TEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQM  145 (204)
T ss_dssp             HHHSSSCCCHHHHHHHHHHHHHTTTT------SCCS--CCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHH
T ss_pred             hhhcccccchHHHHHHHHHHHHHhhh------ccce--eEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHH
Confidence            99999999999999999999998876      7988  568999999744 57899999999988775 68889999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210        239 QAILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ  289 (312)
Q Consensus       239 ~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~  289 (312)
                      +++|++.|+++||++||++++++||+.+.+||+.++++++|++|+++|++.
T Consensus       146 ~~~l~~~~~~~ms~~ea~~l~~~al~~a~~rd~~sg~~~~v~ii~k~gi~~  196 (204)
T d1iruj_         146 YGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITT  196 (204)
T ss_dssp             HHHHHHHCCSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEE
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCEEE
Confidence            999999999999999999999999999999999999999999999999874

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-42  Score=311.78  Aligned_cols=209  Identities=16%  Similarity=0.185  Sum_probs=198.0

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHH
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADC  146 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~  146 (312)
                      |++||+.+.+|+.                   +++|++++|||+++++++..+.+....+|||+|+++++|++||..+|+
T Consensus        20 QvEyA~kav~~g~-------------------t~igi~~~dgvvlaad~~~~~~l~~~~~KI~~I~~~i~~~~sG~~~D~   80 (233)
T d1rypf_          20 QVEYALEAIKQGS-------------------VTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDA   80 (233)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHH
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEECCeEEEEEeccccccCCcchheEEEcCCCEEEEEeeccccH
Confidence            8999999998887                   889999999999999999888888899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEec
Q psy14210        147 VYWLHSLAKECKGYECKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEG  226 (312)
Q Consensus       147 q~l~~~lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~  226 (312)
                      +.++++++.+++.|++.++++++++.+|+.+++++|.+++  ++++|||++  ++||||||+ +||+||++||+|++.++
T Consensus        81 ~~l~~~~r~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~--~~~~RP~gv--~~il~G~d~-~g~~Ly~idp~G~~~~~  155 (233)
T d1rypf_          81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ--SYGGRPYGV--GLLIIGYDK-SGAHLLEFQPSGNVTEL  155 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHH--BTTCCCCCE--EEEEEEEET-TEEEEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHhc--ccccCCccc--eEEEEEEcC-CCCEEEEEccccceecc
Confidence            9999999999999999999999999999999999999999  889999995  689999998 68999999999999999


Q ss_pred             CeeeEccChHHHHHHHHhhC----CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECC-CeEEeChhHHHHHH
Q psy14210        227 TKFCVGSGAEYAQAILDTDY----RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQ-GWQQVLSRDVKDIY  299 (312)
Q Consensus       227 ~~~AiGsGs~~a~~~Le~~y----~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~-G~~~l~~~eI~~~l  299 (312)
                      +++|+|+|+..++++||+.|    +++|+++||++++++||+.+.++|..++.++||++|+++ ++++++++||++++
T Consensus       156 ~~~aiG~gs~~a~~~Le~~~~~~~~~dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~~~~~l~~~ei~~~i  233 (233)
T d1rypf_         156 YGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI  233 (233)
T ss_dssp             SEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred             cEEEecCchHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCCCeEECCHHHHHhhC
Confidence            99999999999999998754    689999999999999999999999999999999999997 69999999998763

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.6e-42  Score=303.42  Aligned_cols=199  Identities=21%  Similarity=0.261  Sum_probs=185.2

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccC
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFL   81 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (312)
                      +.||||+|||+++||||||+|+|+|.|.++.+++++|                                           
T Consensus         5 ~~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~K-------------------------------------------   41 (217)
T d1iru2_           5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISR-------------------------------------------   41 (217)
T ss_dssp             CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCC-------------------------------------------
T ss_pred             cCcccEEEEEEECCEEEEEEcCCcccCCeeecCCcce-------------------------------------------
Confidence            4689999999999999999999999999999999999                                           


Q ss_pred             CCCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         82 SPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                    |++|+++++|+++|..+|++.+.+.++.++..|+
T Consensus        42 ----------------------------------------------I~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~   75 (217)
T d1iru2_          42 ----------------------------------------------IMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE   75 (217)
T ss_dssp             ----------------------------------------------EEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------------------EEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhh
Confidence                                                          9999999999999999999999999999998877


Q ss_pred             h-hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHH
Q psy14210        162 C-KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQA  240 (312)
Q Consensus       162 ~-~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~  240 (312)
                      + .++.+++++.+++++++++|.++.    ..+||+  +++|++|+|+ ++|+||.+||+|++.++++.|+|+|+.++++
T Consensus        76 ~~~~~~~~~v~~~a~~l~~~~y~~~~----~~~p~~--~~~li~G~d~-~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~  148 (217)
T d1iru2_          76 LLGDGHSYSPRAIHSWLTRAMYSRRS----KMNPLW--NTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQP  148 (217)
T ss_dssp             HHCSSCCCCHHHHHHHHHHHHHHHHH----TTCCCC--EEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHH
T ss_pred             hhcCCCCCCHHHHHHHHHHHHHHhcc----ccCccc--ceEEEEEEcC-CCcEEEEEecCceeEeeeEEeccCcHHHHHH
Confidence            5 567899999999999999988776    578988  4689999997 7899999999999999999999999999999


Q ss_pred             HHHhhC--CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHHH
Q psy14210        241 ILDTDY--RPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDVK  296 (312)
Q Consensus       241 ~Le~~y--~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI~  296 (312)
                      +||+.|  +++||++||++++++||+.+.+||+.++++++|++|+++|+++..+++++
T Consensus       149 ~Le~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G~~~~~~~~~~  206 (217)
T d1iru2_         149 LLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEGPLSTE  206 (217)
T ss_dssp             HHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEECCC
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCCEEEcCCeecc
Confidence            999965  48999999999999999999999999999999999999999988777654

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.9e-41  Score=298.40  Aligned_cols=188  Identities=25%  Similarity=0.341  Sum_probs=176.8

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+|+||||||+|+|.++|.++.++..+|                                               
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~K-----------------------------------------------   33 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAK-----------------------------------------------   33 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCccc-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++|+++|..+|++.+.+.++.+++.|++.++
T Consensus        34 ------------------------------------------I~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~   71 (222)
T d1rypi_          34 ------------------------------------------LHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS   71 (222)
T ss_dssp             ------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------------------------------------------EEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      .++++..+++++++.++.++       +||+  +++|+||+|+ ++|+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus        72 ~~~~v~~~a~~l~~~~~~~~-------~p~~--~~~l~aG~d~-~g~~Ly~id~~G~~~~~~~~a~Gsg~~~a~~~Le~~  141 (222)
T d1rypi_          72 REPRVVSALQMLKQHLFKYQ-------GHIG--AYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESH  141 (222)
T ss_dssp             SCCCHHHHHHHHHHHHHHTT-------TCSC--EEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhh-------hccc--eeEEEEEEcC-CCcEEEEEecCcceEEeeEEEECCCcHHHHHHHHhh
Confidence            99999999999999988644       5777  5689999998 799999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCC-eEEeCh
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQG-WQQVLS  292 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G-~~~l~~  292 (312)
                      |+++||+|||++++++||+.+.+||..++++++|+++++++ .+.+.+
T Consensus       142 ~k~~ms~eea~~l~~~al~~a~~~D~~sg~~i~i~vi~~~~~~~~~~~  189 (222)
T d1rypi_         142 WKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRN  189 (222)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEcCCCeEEecC
Confidence            99999999999999999999999999999999999999864 444433

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-40  Score=290.22  Aligned_cols=189  Identities=20%  Similarity=0.254  Sum_probs=177.4

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|.|+|.++.++..+|                                            
T Consensus         6 ~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~K--------------------------------------------   41 (204)
T d1rypj_           6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEK--------------------------------------------   41 (204)
T ss_dssp             SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCC--------------------------------------------
T ss_pred             cCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccE--------------------------------------------
Confidence            479999999999999999999999999999988888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||++ ++++|+++|..+|++.+.++++.+++.|++
T Consensus        42 ---------------------------------------------i~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~~~~~   75 (204)
T d1rypj_          42 ---------------------------------------------IFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKL   75 (204)
T ss_dssp             ---------------------------------------------EEEE-TTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEc-CCEEEEecCcchHHHHHHHHHHHHHHHHHH
Confidence                                                         8999 599999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCC-CCeEEEEcCCceEEecC-eeeEccChHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEIL-GPQLYMLDNTGLLIEGT-KFCVGSGAEYAQA  240 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~-gp~Ly~iDpsGs~~e~~-~~AiGsGs~~a~~  240 (312)
                      +++.+++++.+++++++++|.+++      +||+  +++|++|||+.+ .|+||++||+|++.+++ ++++|+|+.++++
T Consensus        76 ~~~~~~~~~~la~~l~~~l~~~~~------~p~~--v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~  147 (204)
T d1rypj_          76 KEERAIEPETFTQLVSSSLYERRF------GPYF--VGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFG  147 (204)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHTTTT------SCCC--EEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHH
T ss_pred             hcCCCCcchHHHHHHHHHHHhhcc------ccee--eeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHH
Confidence            999999999999999999998776      8988  568999999644 48999999999999886 6777999999999


Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEE
Q psy14210        241 ILDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQ  289 (312)
Q Consensus       241 ~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~  289 (312)
                      +|++.|+++||++||++++++||..++++|..++++++|++|+++|+++
T Consensus       148 ~l~~~~~~~ms~~ea~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg~~~  196 (204)
T d1rypj_         148 MCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVVK  196 (204)
T ss_dssp             HHHHHCCSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEE
T ss_pred             HHHhccccCCCHHHHHHHHHHHHHHHHHhcCccCCeEEEEEEECCceEE
Confidence            9999999999999999999999999999999999999999999999764

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-40  Score=294.48  Aligned_cols=191  Identities=24%  Similarity=0.248  Sum_probs=178.4

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|.|+|.++.+++++|                                            
T Consensus         7 ~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~K--------------------------------------------   42 (222)
T d1ryp1_           7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPK--------------------------------------------   42 (222)
T ss_dssp             CCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCC--------------------------------------------
T ss_pred             CCCcEEEEEEECCEEEEEECCCcccCCEeccCCcce--------------------------------------------
Confidence            589999999999999999999999999999998888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   ||+|++|++++++|..+|++.+.++++.+++.|++
T Consensus        43 ---------------------------------------------I~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~   77 (222)
T d1ryp1_          43 ---------------------------------------------VFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHF   77 (222)
T ss_dssp             ---------------------------------------------CEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhh
Confidence                                                         89999999999999999999999999999999998


Q ss_pred             hcC-CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        163 KYR-TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       163 ~~g-~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      .++ .++++..++++++.++|..+.      |||+  +++||+|||++++|+||.+||+|++.+++++|+|+|+.+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~------~p~~--~~~li~G~d~~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~a~~~  149 (222)
T d1ryp1_          78 DHNDKKLSINSAARNIQHLLYGKRF------FPYY--VHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPF  149 (222)
T ss_dssp             HTTTCCCCHHHHHHHHHHHHHTTTT------SCCC--EEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHH
T ss_pred             hcCCCCCcHHHHHHHHHHHHHhhhh------hhhe--eeeeEEEEeCCCCeEEEEECCCcEEEEeceEEEcccHHHHHHH
Confidence            765 578899999999988887654      8988  5689999998677899999999999999999999999999999


Q ss_pred             HHhhCC-----------------CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        242 LDTDYR-----------------PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       242 Le~~y~-----------------~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      ||+.|+                 ++||++||++++++||+.+.+||+.++++++|++|++||+++.
T Consensus       150 Le~~~~~~~~~~~~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdGv~~~  215 (222)
T d1ryp1_         150 LDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKE  215 (222)
T ss_dssp             HHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred             HHHhhccccccCcccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCCEEEE
Confidence            999987                 6899999999999999999999999999999999999998753

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-40  Score=286.00  Aligned_cols=195  Identities=25%  Similarity=0.320  Sum_probs=185.2

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||+|||+++||||||+|+|++.|.++.+++++|                                               
T Consensus         2 t~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~K-----------------------------------------------   34 (199)
T d1iruk_           2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDK-----------------------------------------------   34 (199)
T ss_dssp             CCEEEEECSSEEEEEEECCEEETTEEEESSCCC-----------------------------------------------
T ss_pred             eEEEEEEECCEEEEEECCCccCCCeeecCCcce-----------------------------------------------
Confidence            899999999999999999999999998888888                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                ||+|+++++++++|..+|++.+.++++.+++.|+..++
T Consensus        35 ------------------------------------------i~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~   72 (199)
T d1iruk_          35 ------------------------------------------MFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNG   72 (199)
T ss_dssp             ------------------------------------------EEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ------------------------------------------EEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcC
Confidence                                                      99999999999999999999999999999999999999


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                      .+++++.+++.+++.++.+++    ..+|++  ++++++|||+..+|+||.+||.|.+.+++++++|+|+.+++++|++.
T Consensus        73 ~~~~~~~~~~~l~~~~~~~~~----~~~~~~--~~~~~aG~d~~~~~~l~~~~~~g~~~~~~~~a~G~gs~~a~~~l~~~  146 (199)
T d1iruk_          73 YELSPTAAANFTRRNLADCLR----SRTPYH--VNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRY  146 (199)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHT----SSSCCC--EEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHHHHHHhh----ccCCcc--eeeeecceeccCCceEEeecccceEEeeeeeeecccchhhhHHHHHh
Confidence            999999999999999998776    467877  46799999986789999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEeChhHH
Q psy14210        246 YRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQVLSRDV  295 (312)
Q Consensus       246 y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l~~~eI  295 (312)
                      |+++|+++||++++++||+.+.++|+.++++++|++|+++|++++++..+
T Consensus       147 ~~~~~~~~ea~~l~~~al~~~~~~d~~sg~~~~v~vv~~~g~~~~~~~~~  196 (199)
T d1iruk_         147 YTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNISF  196 (199)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCCCBCC
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhcCCcCCceEEEEEcCCCeEEcCCccC
Confidence            99999999999999999999999999999999999999999998877654

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-39  Score=282.58  Aligned_cols=191  Identities=21%  Similarity=0.270  Sum_probs=181.1

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      .+|||+|||+++||||||+|+|+|+|.++.+++.+|                                            
T Consensus         7 ~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~K--------------------------------------------   42 (213)
T d1iru1_           7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPK--------------------------------------------   42 (213)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCC--------------------------------------------
T ss_pred             CCCcEEEEEEECCEEEEEECCccccCceeeccccCE--------------------------------------------
Confidence            489999999999999999999999999998988888                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYEC  162 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~  162 (312)
                                                                   |++|++|++++++|..+|++.+.++++.+++.|++
T Consensus        43 ---------------------------------------------I~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~   77 (213)
T d1iru1_          43 ---------------------------------------------CYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKH   77 (213)
T ss_dssp             ---------------------------------------------EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------EEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHH
Confidence                                                         99999999999999999999999999999999999


Q ss_pred             hcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHH
Q psy14210        163 KYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAIL  242 (312)
Q Consensus       163 ~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~L  242 (312)
                      .++.++++..+++++++.+|.+++      +|++  +.++++|||..++|.+|.+||.|++.++++.++|+|+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~g~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~l  149 (213)
T d1iru1_          78 SNNKAMTTGAIAAMLSTILYSRRF------FPYY--VYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLL  149 (213)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHTTTT------SCCC--EEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHH
T ss_pred             hhCCchhHHHHHHHHHHHHHHHHh------hhcc--cccceEEEecCCCcEEEecCCcceeeecCeeeecCccHHHHHHH
Confidence            999999999999999999998876      7877  46899999987789999999999999999999999999999999


Q ss_pred             HhhCC---------CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEECCCeEEe
Q psy14210        243 DTDYR---------PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKINGQGWQQV  290 (312)
Q Consensus       243 e~~y~---------~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iItk~G~~~l  290 (312)
                      |+.|+         ++||++||++++++||..+.++|+.++++++|++|+++|++..
T Consensus       150 ~~~~~~~~~~~~~~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G~~~~  206 (213)
T d1iru1_         150 DNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREE  206 (213)
T ss_dssp             HHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEE
T ss_pred             HHhhcccchhcccccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCEEEE
Confidence            98764         7899999999999999999999999999999999999998754

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=2e-39  Score=291.20  Aligned_cols=168  Identities=15%  Similarity=0.211  Sum_probs=145.0

Q ss_pred             EEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC-CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEE
Q psy14210        128 VIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR-TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAY  206 (312)
Q Consensus       128 I~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g-~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~  206 (312)
                      |++|++||+|+++|+.+|++.|+++++.+++.|+++++ .+++++.+++.++++++....   .+.|||++  ++|||||
T Consensus        45 I~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~---~~~rP~gv--s~lvaG~  119 (227)
T d1q5qa_          45 VSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT---EQPKPYEV--EICVAEV  119 (227)
T ss_dssp             EEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH---HSSSCCCE--EEEEEEC
T ss_pred             EEEecCceEEEecCchHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH---hcCCCceE--EEEEEEE
Confidence            99999999999999999999999999999999999998 468999999999988654332   25699984  6899999


Q ss_pred             ecC---CCCeEEEEcCCceEEecCee-eEccChHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcC----cCCCcEE
Q psy14210        207 DEI---LGPQLYMLDNTGLLIEGTKF-CVGSGAEYAQAILDTDYRPDLSEEEAYALATSAIYHACRRDI----HSGGCVR  278 (312)
Q Consensus       207 D~~---~gp~Ly~iDpsGs~~e~~~~-AiGsGs~~a~~~Le~~y~~~ms~eEAi~la~kaL~~a~~rD~----~sg~~ie  278 (312)
                      |..   .+|+||.+||+|++.+++++ +.|.++.+++++|+++|+++||+|||++++++||+.++++|.    .++.++|
T Consensus       120 D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~~Le~~y~~~ms~eea~~la~~aL~~a~~~d~~~~~~~~~~ie  199 (227)
T d1q5qa_         120 GRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLE  199 (227)
T ss_dssp             CCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSE
T ss_pred             ecCCCCCCCEEEEEccccceeeecccccCCCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhcccccCCcCcceEE
Confidence            952   47999999999999988765 556789999999999999999999999999999999998874    3567899


Q ss_pred             EEEEECCC----eEEeChhHHHHHHH
Q psy14210        279 LYKINGQG----WQQVLSRDVKDIYN  300 (312)
Q Consensus       279 I~iItk~G----~~~l~~~eI~~~l~  300 (312)
                      |++++++|    |++++++||++++.
T Consensus       200 vavi~k~~~~~~fr~l~~~ei~~~l~  225 (227)
T d1q5qa_         200 VAVLDQSRPRRAFRRIAGTALEQLVP  225 (227)
T ss_dssp             EEEEETTSSSCCEEECCHHHHHTTSC
T ss_pred             EEEEECCCCccceEEcCHHHHHHHhc
Confidence            99999876    89999999998763

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=9.5e-29  Score=212.33  Aligned_cols=176  Identities=15%  Similarity=0.115  Sum_probs=132.0

Q ss_pred             ccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCC
Q psy14210          3 ITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLS   82 (312)
Q Consensus         3 ~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (312)
                      -+|||+|||+|+||||||||+|+|+|+++.++...|                                            
T Consensus         3 ~~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~--------------------------------------------   38 (180)
T d2z3ba1           3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTAR--------------------------------------------   38 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCC--------------------------------------------
T ss_pred             CCCeEEEEEEECCEEEEEECCcccCCceeEecccce--------------------------------------------
Confidence            379999999999999999999999999998875433                                            


Q ss_pred             CCCCCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecC-eEEEEEeCChhHHHHHHHHHHHHhhhhh
Q psy14210         83 PPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSS-SILCTLAGNAADCVYWLHSLAKECKGYE  161 (312)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d-~i~~a~sG~~aD~q~l~~~lr~~~~~~~  161 (312)
                                                                  |++++++ .++++.+|..+|.+.+.+.++.+.+.++
T Consensus        39 --------------------------------------------ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   74 (180)
T d2z3ba1          39 --------------------------------------------KVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN   74 (180)
T ss_dssp             --------------------------------------------CEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT
T ss_pred             --------------------------------------------EEEEecccceecccchHHHHHHHHHHHHHHHHHhhc
Confidence                                                        2788876 4888899999999999999888776665


Q ss_pred             hhcCCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHH
Q psy14210        162 CKYRTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAI  241 (312)
Q Consensus       162 ~~~g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~  241 (312)
                      ....................+        ..+++ +......+|++. .++.++..++.      .+.++|+|+.+|+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~------~~~a~GSGs~~A~g~  138 (180)
T d2z3ba1          75 GNLKRAAVELAKEWRSDKVLR--------KLEAM-LIVMNQDTLLLV-SGTGEVIEPDD------GILAIGSGGNYALAA  138 (180)
T ss_dssp             TCHHHHHHHHHHHHHHCTTGG--------GCCCC-EEEECSSCEEEE-CTTCCEECCSS------SEEEESTTHHHHHHH
T ss_pred             cccchhHHHHHHHHhHHHHHH--------Hhhcc-eeeeeccccccc-cCCceeecccc------cEEEEcCchHHHHHH
Confidence            433222222111111111111        11222 223344555555 45566655554      478999999999999


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        242 LDTDYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       242 Le~~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      |++.|+++||.+||++++++||+.|.++|+.++++++|.+|
T Consensus       139 l~~~~~~~~s~~eA~~l~~~Al~~A~e~dvyT~~~~~~~~i  179 (180)
T d2z3ba1         139 GRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEEL  179 (180)
T ss_dssp             HHHHHHHHGGGCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHhhcCCCccCHHHHHHHHHHHHHhhcEEcCCcEEEEEe
Confidence            99999999999999999999999999999999999999876

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=2.3e-27  Score=201.38  Aligned_cols=170  Identities=18%  Similarity=0.087  Sum_probs=135.4

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||||||+|+||||||+|+|+|+|+++.+++.+|                                               
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~K-----------------------------------------------   33 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARK-----------------------------------------------   33 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcce-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCeEEEEEeCChhHHHHHHHHHHHHhhhhhhhcC
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSSILCTLAGNAADCVYWLHSLAKECKGYECKYR  165 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~g  165 (312)
                                                                |++|+++++++.+|..+|.+.+.+.+..+...+.....
T Consensus        34 ------------------------------------------i~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~~~   71 (171)
T d1m4ya_          34 ------------------------------------------VRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNL   71 (171)
T ss_dssp             ------------------------------------------EEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             ------------------------------------------EEEecCCcEEEEEeechhhHHHHHHHHHHHHHHhhccc
Confidence                                                      89999999999999999999998887776555443222


Q ss_pred             CccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHhh
Q psy14210        166 TGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDTD  245 (312)
Q Consensus       166 ~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~~  245 (312)
                           .......+..+..+..       ++.  ...++.+++. ++|+++..|+.|...+.++.|+|||+.+|+++|+..
T Consensus        72 -----~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~  136 (171)
T d1m4ya_          72 -----TKAAVELAKDWRTDRV-------LRR--LEALLLVADK-ENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKAL  136 (171)
T ss_dssp             -----HHHHHHHHHHHHHCTT-------GGG--CCCEEEEECS-SCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHH
T ss_pred             -----hhhHHHHHHHHHHhhh-------hcc--cccccceecC-CcceEEecCCceeeecCCEEEEcchHHHHHHHHHhh
Confidence                 2222222222332222       111  1234445555 789999999999999999999999999999999987


Q ss_pred             CC-CCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        246 YR-PDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       246 y~-~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      |+ ++|+   |.+++++||+.|.++|+.++++++|..|
T Consensus       137 ~~~~~~~---a~el~~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         137 LRNTDLS---AREIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHCCCC---HHHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             ccCCCCC---HHHHHHHHHHHHHhhceEcCCcEEEEEC
Confidence            65 5775   7779999999999999999999998653

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=9.2e-26  Score=191.96  Aligned_cols=171  Identities=15%  Similarity=0.174  Sum_probs=130.9

Q ss_pred             ceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCccccccccccccccccCCCCC
Q psy14210          6 TTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSYSQRSHCVAETQQDHFLSPPL   85 (312)
Q Consensus         6 ~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (312)
                      ||||||+|+||||||+|+|+|+|+++.+++.+|                                               
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~K-----------------------------------------------   33 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARK-----------------------------------------------   33 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCC-----------------------------------------------
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcce-----------------------------------------------
Confidence            899999999999999999999999999999999                                               


Q ss_pred             CCCccccccCCccccccccccCCccccCCCCCCCCCCCCcceEEEecCe-EEEEEeCChhHHHHHHHHHHHHhhhhhhhc
Q psy14210         86 SQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPHNTSFQVIPVSSS-ILCTLAGNAADCVYWLHSLAKECKGYECKY  164 (312)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~~~~~KI~~I~d~-i~~a~sG~~aD~q~l~~~lr~~~~~~~~~~  164 (312)
                                                                |++|+++ ++++.+|...+.+.+.+..+.+.+.++   
T Consensus        34 ------------------------------------------i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   68 (173)
T d1g3ka_          34 ------------------------------------------VRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQ---   68 (173)
T ss_dssp             ------------------------------------------EEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTT---
T ss_pred             ------------------------------------------EEEecCCcEEEEeeehhHhHHHHHHHHHHHHHhhc---
Confidence                                                      8999887 566677777776666655544433332   


Q ss_pred             CCccCHHHHHHHHHHHHHHhccCCCCCCCCCCcccceeeeEEecCCCCeEEEEcCCceEEecCeeeEccChHHHHHHHHh
Q psy14210        165 RTGMTIRHAANLLVNMVRKYRTGNHSSKIPNGLSFGTLMAAYDEILGPQLYMLDNTGLLIEGTKFCVGSGAEYAQAILDT  244 (312)
Q Consensus       165 g~~i~v~~la~~ls~~l~~~~~~~~~~~rP~gls~~~IIaG~D~~~gp~Ly~iDpsGs~~e~~~~AiGsGs~~a~~~Le~  244 (312)
                         ......+..+...++....      .++   ....+.++|.+.++.++..|+.|.+.+.++.|+|+|+.+|++.|+.
T Consensus        69 ---~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~  136 (173)
T d1g3ka_          69 ---GHLLKSAVELAKDWRTDRA------LRK---LEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARA  136 (173)
T ss_dssp             ---TCHHHHHHHHHHHHHHSTT------GGG---CCCEEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHH
T ss_pred             ---CcchhHHHHHHHHHHHhhh------hcc---cccccccccCCCcceecccCceEEecCCCEEEecchHHHHHHHHHH
Confidence               1222333344444443333      111   1234455666578999999999999999999999999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEE
Q psy14210        245 DYRPDLSEEEAYALATSAIYHACRRDIHSGGCVRLYKI  282 (312)
Q Consensus       245 ~y~~~ms~eEAi~la~kaL~~a~~rD~~sg~~ieI~iI  282 (312)
                      +|+  ++.+||.+++++||+.|.++|+.++++++|-.|
T Consensus       137 ~~~--~~~~~A~ela~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         137 LVE--NTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             HHH--HCCCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             hhh--cCCCCHHHHHHHHHHHHHhhcEEcCCcEEEEEC
Confidence            875  445578999999999999999999999998765

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=6.4e-05  Score=65.04  Aligned_cols=61  Identities=15%  Similarity=0.078  Sum_probs=46.0

Q ss_pred             cccCceEEEEEcCCeEEEEEcCCccCCcccccccccccccccCCCcccccCccccCCcccCCCc---cccccccccc
Q psy14210          2 FITGTTTLGFRYPEGIILATDSRATANDLIVSQKLNKFCQSSLGDSCELLHPVYTGGERCGQSY---SQRSHCVAET   75 (312)
Q Consensus         2 ~~~g~t~~~~~~~~gv~~~~d~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   75 (312)
                      +.+|+|+||++++||||||+|+|.+++.   ....+|+        .+|-+++++  ..+|...   ...++++.+.
T Consensus        28 v~~g~t~igi~~~dgvvlaad~~~~~~l---~~~~~KI--------~~I~~~i~~--~~sG~~~D~~~l~~~~r~~~   91 (233)
T d1rypf_          28 IKQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKI--------IKCDEHMGL--SLAGLAPDARVLSNYLRQQC   91 (233)
T ss_dssp             HHTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCE--------EEEETTEEE--EEEECHHHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEEECCeEEEEEeccccccC---CcchheE--------EEcCCCEEE--EEeeccccHHHHHHHHHHHH
Confidence            3579999999999999999999999853   3445676        567777877  6777766   3555665543

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.07  E-value=0.03  Score=46.93  Aligned_cols=34  Identities=9%  Similarity=-0.020  Sum_probs=28.7

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |++||+.+..++.                   +++|++++|||++++|++.+.
T Consensus        11 QvEYa~~av~~G~-------------------t~vgi~~~dgVvlaad~r~~~   44 (221)
T d1yara1          11 QVEYAREAVKKGS-------------------TALGMKFANGVLLISDKKVRS   44 (221)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEECCCCCC
T ss_pred             HHHHHHHHHhcCC-------------------cEEEEEeCCEEEEEEecccCC
Confidence            7888888877666                   889999999999999987543

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.07  E-value=0.024  Score=48.53  Aligned_cols=34  Identities=21%  Similarity=0.065  Sum_probs=30.5

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |++||+.+.+|+.                   +++|++++|||++|+|++.+.
T Consensus        20 QvEyA~kav~~G~-------------------tvvgi~~~dgVvlaad~r~~~   53 (250)
T d1rypb_          20 QIDYALTAVKQGV-------------------TSLGIKATNGVVIATEKKSSS   53 (250)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEEETTEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEecccCC
Confidence            9999999998887                   789999999999999987544

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.57  E-value=0.044  Score=46.61  Aligned_cols=33  Identities=9%  Similarity=-0.142  Sum_probs=29.5

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSS  118 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~  118 (312)
                      |++||+.+.++++                   +++|++++||||+++|++..
T Consensus        17 QvEya~kav~~G~-------------------Tvvgik~~dgVvla~d~r~~   49 (243)
T d1irud_          17 QVEYAQEAVKKGS-------------------TAVGVRGRDIVVLGVEKKSV   49 (243)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEECCSSEEEEEECCCCC
T ss_pred             HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEecccc
Confidence            8999999988877                   89999999999999998643

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.54  E-value=0.046  Score=45.90  Aligned_cols=34  Identities=9%  Similarity=-0.049  Sum_probs=29.9

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||+.+.+++.                   +++|++++|||++|+|++.+.
T Consensus        20 Qveya~kav~~G~-------------------tvigik~~dgVvlaaD~r~~~   53 (233)
T d1irub_          20 QIEYALAAVAGGA-------------------PSVGIKAANGVVLATEKKQKS   53 (233)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEECSSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEeCCccc
Confidence            8899998888877                   799999999999999987544

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.43  E-value=0.036  Score=47.07  Aligned_cols=96  Identities=5%  Similarity=-0.036  Sum_probs=64.2

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCCCC-------CCcceEEEecCeEEEEE
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTVPH-------NTSFQVIPVSSSILCTL  139 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~~~-------~~~~KI~~I~d~i~~a~  139 (312)
                      |++||+.+.+++.                   ++||++++|||++++|++..+.+.       ..+++|.-    .+.|.
T Consensus        18 QvEYA~kav~~G~-------------------t~vgik~~dgVvlaad~~~~~~~~~~~~KI~~I~~~i~~----~~sG~   74 (238)
T d1iruf_          18 QIEYAMEAVKQGS-------------------ATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGI----SIAGL   74 (238)
T ss_dssp             HHHHHHHHHHHSC-------------------CEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEE----EEEEC
T ss_pred             HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEecccccCCCCccceEEEeCCceEE----EEecc
Confidence            8999999998888                   789999999999999977654331       23455542    46677


Q ss_pred             eCChhHHHHHHHH-HHHHhhhhhhhcCCccCHHHHHHHHHHHHHHhc
Q psy14210        140 AGNAADCVYWLHS-LAKECKGYECKYRTGMTIRHAANLLVNMVRKYR  185 (312)
Q Consensus       140 sG~~aD~q~l~~~-lr~~~~~~~~~~g~~i~v~~la~~ls~~l~~~~  185 (312)
                      .|..--....++. +...-..|...-..+.-...++..+....+...
T Consensus        75 ~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~y~~~~~  121 (238)
T d1iruf_          75 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYG  121 (238)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHhhccC
Confidence            7777666544443 333333444445555556667777666666553

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.38  E-value=0.045  Score=46.42  Aligned_cols=35  Identities=9%  Similarity=0.010  Sum_probs=30.4

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |.+||+.+..|+.                   ++||++++|||++++|++.+..
T Consensus        15 Qveya~~a~~~G~-------------------t~Vgi~~~dgVvla~d~r~~~~   49 (242)
T d1rype_          15 QVEYSLEAIKLGS-------------------TAIGIATKEGVVLGVEKRATSP   49 (242)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEECSSCEEEEEECCCSST
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEeCCccCc
Confidence            8899998888877                   7899999999999999876543

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.36  E-value=0.033  Score=47.17  Aligned_cols=34  Identities=6%  Similarity=-0.083  Sum_probs=29.9

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |++||+.+..|+.                   +++|++++|||++++|++.+.
T Consensus        16 QvEYa~kav~~G~-------------------t~vgik~~dgVvlaad~~~~~   49 (234)
T d1irue_          16 QVEYDIEAIKLGS-------------------TAIGIQTSEGVCLAVEKRITS   49 (234)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEEECCCCC
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEecCccC
Confidence            8999999988887                   899999999999999976544

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.02  E-value=0.038  Score=46.98  Aligned_cols=35  Identities=9%  Similarity=-0.119  Sum_probs=30.9

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |++||+.+..++.                   +++|++++||||+++|++.+.-
T Consensus        17 QvEya~kav~~G~-------------------tvIgik~~dgVvlaad~~~~~~   51 (241)
T d1rypd_          17 QVEYALEAVKRGT-------------------CAVGVKGKNCVVLGCERRSTLK   51 (241)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEECSSCEEEEEECCCSSC
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEEcccccc
Confidence            8999999888777                   8999999999999999876664

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.67  E-value=0.036  Score=47.32  Aligned_cols=35  Identities=9%  Similarity=-0.053  Sum_probs=30.9

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |++||+.+.+++.                   +++|++++||||+++|++.+.-
T Consensus        19 QvEya~kav~~G~-------------------t~igik~~dgVvlaad~~~~~~   53 (244)
T d1rypg_          19 QVEYAVKAVENGT-------------------TSIGIKCNDGVVFAVEKLITSK   53 (244)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEEETTEEEEEEEEECCCT
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEeCCEEEEEEecccCCC
Confidence            9999999999887                   7899999999999999776543

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.64  E-value=0.034  Score=47.35  Aligned_cols=35  Identities=6%  Similarity=-0.003  Sum_probs=30.2

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |.+||+.+..++.                   +++|++++|||++++|++.+.-
T Consensus        20 Qveya~~ai~~G~-------------------T~vgi~~~dgVvlaad~r~s~~   54 (244)
T d1rypc_          20 QVEYALESISHAG-------------------TAIGIMASDGIVLAAERKVTST   54 (244)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEEETTEEEEEEECSSCCS
T ss_pred             HHHHHHHHHhcCC-------------------CEEEEEeCCEEEEEEeCCccCC
Confidence            8899988887777                   7899999999999999876554

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=87.40  E-value=0.047  Score=46.13  Aligned_cols=93  Identities=5%  Similarity=-0.113  Sum_probs=56.5

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC--CCCCcceEEEecCeEEEEEeCChh
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV--PHNTSFQVIPVSSSILCTLAGNAA  144 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~--~~~~~~KI~~I~d~i~~a~sG~~a  144 (312)
                      |++||+.+-.++.                   ++||++|+||||+++|++.++.  ....+++|.-    .+.|.++..-
T Consensus         8 q~eyA~~av~~Gt-------------------T~vgi~~~~GVvlaad~r~~s~~KI~~i~~~i~~----~~sG~~aD~~   64 (227)
T d1q5qa_           8 RSELARKGIARGR-------------------SVVVLTFRDGVLFVAENPSTALHKVSELYDRLGF----AAVGKYNEFE   64 (227)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEECSSEEEEEECCSCSSSCSEEEEETTEEE----EEEECHHHHH
T ss_pred             HHHHHHHHHhcCC-------------------CEEEEEECCEEEEEEccCCCCcceEEEecCceEE----EecCchHHHH
Confidence            7778877766665                   8999999999999999887664  3355667764    5777777777


Q ss_pred             HHHHHHH-HHHHHhhhhhhhc-CCccCHHHHHHHHHHHHH
Q psy14210        145 DCVYWLH-SLAKECKGYECKY-RTGMTIRHAANLLVNMVR  182 (312)
Q Consensus       145 D~q~l~~-~lr~~~~~~~~~~-g~~i~v~~la~~ls~~l~  182 (312)
                      -....++ .+...-..|.... -...-...+++.+....+
T Consensus        65 ~l~~~~r~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~  104 (227)
T d1q5qa_          65 NLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT  104 (227)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence            6543332 2333322333222 222224455555554443

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.19  E-value=0.054  Score=45.99  Aligned_cols=35  Identities=11%  Similarity=-0.097  Sum_probs=29.5

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||+.+.+|..                  .+++|++++||||+++|++.+.
T Consensus        18 QvEYA~~av~~~g------------------~T~igik~~dgVvlaad~r~~~   52 (243)
T d1rypa_          18 QVEYAFKATNQTN------------------INSLAVRGKDCTVVISQKKVPD   52 (243)
T ss_dssp             HHHHHHHHTTTTC------------------CCEEEEECSSEEEEEEECCCCC
T ss_pred             HHHHHHHHHHccC------------------ceEEEEEcCCEEEEEEeccccc
Confidence            8899988887754                  4689999999999999987544

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.09  E-value=0.06  Score=45.98  Aligned_cols=34  Identities=9%  Similarity=-0.017  Sum_probs=29.4

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||..+.+++.                   ++||++++||||+++|++.+.
T Consensus        22 QvEYa~~av~~G~-------------------t~VGik~~dgVvlaad~~~~~   55 (245)
T d1irug_          22 QVEYAMKAVENSS-------------------TAIGIRCKDGVVFGVEKLVLS   55 (245)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEECSSBEEEEEEEECSC
T ss_pred             HHHHHHHHHHcCC-------------------cEEEEEeCCEEEEEEeccccc
Confidence            9999999988877                   789999999999999976433

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.59  E-value=0.049  Score=46.52  Aligned_cols=34  Identities=9%  Similarity=-0.043  Sum_probs=29.0

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |++||+.+..++.                   ++||++++||||+++|++.+.
T Consensus        19 QvEyA~kav~~G~-------------------tvvgik~~dgVvlaad~~~~~   52 (250)
T d1iruc_          19 QVEYAMEAIGHAG-------------------TCLGILANDGVLLAAERRNIH   52 (250)
T ss_dssp             HHHHHHHHHTTSC-------------------CEEEEBCSSEEEEEECCCCCC
T ss_pred             HHHHHHHHHhcCC-------------------cEEEEEeCCEEEEEEeCcccc
Confidence            8888888877776                   789999999999999976544

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=86.07  E-value=0.39  Score=38.04  Aligned_cols=58  Identities=17%  Similarity=0.066  Sum_probs=40.2

Q ss_pred             ccccccccCCccccCCCCCC---CCCCCCcceEEE-ecCeEE-----EEEeCChhHHHHHHHHHHHHhhhhhhh
Q psy14210         99 ELLHPVYTGGERCGPFSQSS---TVPHNTSFQVIP-VSSSIL-----CTLAGNAADCVYWLHSLAKECKGYECK  163 (312)
Q Consensus        99 ~~~~~~~~dgVv~~~~~~~~---~~~~~~~~KI~~-I~d~i~-----~a~sG~~aD~q~l~~~lr~~~~~~~~~  163 (312)
                      .+++++|+||||+|+|++-+   .+       +++ ..+.+.     ....|..++........+...+.++..
T Consensus         7 Tivai~~~dGVvlAaDtR~S~G~~i-------~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   73 (180)
T d2z3ba1           7 TIFAVQHKGRSAMSGDGQVTFGQAV-------VMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEY   73 (180)
T ss_dssp             CEEEEEETTEEEEEECCCEEETTTE-------EEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCEEEEEECCcccCCcee-------EecccceEEEEecccceecccchHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999998843   33       444 234333     367778888888887776655555443

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.77  E-value=0.092  Score=44.57  Aligned_cols=35  Identities=6%  Similarity=-0.185  Sum_probs=29.9

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSST  119 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~  119 (312)
                      |.+||+.+.+|++                  .+++|++++||||+++|++.+.
T Consensus        23 QvEYA~kav~~gg------------------~t~igIk~~dgVVlaad~r~~~   57 (244)
T d1irua_          23 QVEYAFKAINQGG------------------LTSVAVRGKDCAVIVTQKKVPD   57 (244)
T ss_dssp             HHHHHHHHHHTTC------------------CEEEEEECSSEEEEEEECCCCC
T ss_pred             HHHHHHHHHHhCC------------------ccEEEEEcCCEEEEEEeccccc
Confidence            9999999988875                  3589999999999999987543

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.89  E-value=0.086  Score=44.75  Aligned_cols=35  Identities=6%  Similarity=-0.121  Sum_probs=29.8

Q ss_pred             ccccccccccccccCCCCCCCCccccccCCccccccccccCCccccCCCCCCCC
Q psy14210         67 QRSHCVAETQQDHFLSPPLSQSSQHIISGDSCELLHPVYTGGERCGPFSQSSTV  120 (312)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgVv~~~~~~~~~~  120 (312)
                      |.+||+.+..++.                   +++|++++||||+++|++.+.-
T Consensus        20 QvEya~kav~~G~-------------------t~Igik~~dgVvlaad~r~~~~   54 (243)
T d1j2pa_          20 QVEYAREAVKRGA-------------------TAIGIKCKEGVILIADKRVGSK   54 (243)
T ss_dssp             HHHHHHHHHHTSC-------------------CEEEEEETTEEEEEEECCCSCT
T ss_pred             HHHHHHHHHHcCC-------------------CEEEEEECCEEEEEEecCcccc
Confidence            8899988887776                   7899999999999999876543