Psyllid ID: psy14224

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
FTNELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITLDMK
cccccccccccccccccccccEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEEEEcccEEEEEccccccEEEEEEEccccccccccccccccccccEEEEEEEEcc
cccccccccccccEEEcccccEEEEEccccccccccHEEEEccccccccccccEccccccccccccccHEcccccccccccccccccccEEEEEEEEEEHHcccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEccc
ftnelkvpglfppifnvaskssIVVNatcgevggpevycklkehrgkadtqcsvcdasssspgkkhSIRYVLEQnnmnwwqsptlhqgpqyeYVTITLdmkqvcphidrrpstIMCRRYALEQNnmnwwqsptlhqgpqyeYVTITLDMK
ftnelkvpglfppifnvASKSSIVVNATCGEVGGPEVYCKLKEhrgkadtqcsvcdasssspgkkHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNwwqsptlhqgpqyeYVTITLDMK
FTNELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITLDMK
******VPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHR**********************IRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITL***
******V*GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEH****DTQC*VCDASSS*PGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITLDM*
FTNELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKE*********************KHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITLDMK
***ELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITLDM*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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FTNELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQVCPHIDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVTITLDMK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
P25391 3075 Laminin subunit alpha-1 O yes N/A 0.62 0.030 0.5 1e-21
P19137 3084 Laminin subunit alpha-1 O yes N/A 0.62 0.030 0.489 2e-21
P24043 3122 Laminin subunit alpha-2 O no N/A 0.62 0.029 0.489 4e-20
Q60675 3106 Laminin subunit alpha-2 O no N/A 0.62 0.029 0.489 9e-20
Q16787 3333 Laminin subunit alpha-3 O no N/A 0.62 0.027 0.390 4e-09
Q61001 3718 Laminin subunit alpha-5 O no N/A 0.653 0.026 0.336 8e-09
Q61789 3333 Laminin subunit alpha-3 O no N/A 0.62 0.027 0.371 1e-08
Q00174 3712 Laminin subunit alpha OS= no N/A 0.613 0.024 0.346 2e-08
O15230 3695 Laminin subunit alpha-5 O no N/A 0.586 0.023 0.353 3e-08
Q9R0B6 1581 Laminin subunit gamma-3 O no N/A 0.573 0.054 0.313 0.0007
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2 Back     alignment and function desciption
 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 5/98 (5%)

Query: 9   GLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEH---RGKADTQCSVCDASSSSPGKK 65
           GLFP I N+AS + I  NATCGE  GPE++CKL EH   R   + QC +CD +S++P ++
Sbjct: 21  GLFPAILNLASNAHISTNATCGE-KGPEMFCKLVEHVPGRPVRNPQCRICDGNSANPRER 79

Query: 66  HSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
           H I + ++  N NWWQSP++  G +Y +VTITLD++QV
Sbjct: 80  HPISHAIDGTN-NWWQSPSIQNGREYHWVTITLDLRQV 116
Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
Homo sapiens (taxid: 9606)
>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1 Back     alignment and function description
>sp|P24043|LAMA2_HUMAN Laminin subunit alpha-2 OS=Homo sapiens GN=LAMA2 PE=1 SV=4 Back     alignment and function description
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1 Back     alignment and function description
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2 Back     alignment and function description
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4 Back     alignment and function description
>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3 Back     alignment and function description
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2 Back     alignment and function description
>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8 Back     alignment and function description
>sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus GN=Lamc3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
383861111 1034 PREDICTED: laminin subunit alpha-1 [Mega 0.64 0.092 0.558 1e-23
350425118 3144 PREDICTED: laminin subunit alpha-1-like 0.62 0.029 0.575 2e-23
340709274 3145 PREDICTED: laminin subunit alpha-1-like 0.62 0.029 0.575 2e-23
332021492 307 Laminin subunit alpha-1 [Acromyrmex echi 0.613 0.299 0.561 4e-23
328792763 1014 PREDICTED: laminin subunit alpha-1-like 0.62 0.091 0.555 8e-23
380023625 969 PREDICTED: laminin subunit alpha-1-like 0.62 0.095 0.555 1e-22
30716853387 Laminin subunit alpha-1 [Camponotus flor 0.58 1.0 0.569 2e-21
322798301119 hypothetical protein SINV_13384 [Solenop 0.64 0.806 0.519 2e-21
297489728 3030 PREDICTED: laminin subunit alpha-1 [Bos 0.633 0.031 0.53 2e-21
358418685 3030 PREDICTED: laminin subunit alpha-1 [Bos 0.633 0.031 0.53 2e-21
>gi|383861111|ref|XP_003706030.1| PREDICTED: laminin subunit alpha-1 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 71/102 (69%), Gaps = 6/102 (5%)

Query: 2   TNELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSS 61
           +  LK  GLFP  FNVA+K+ I VNATCGE G PE +CK  E      ++C+VCDA S  
Sbjct: 50  SRNLKNSGLFPSTFNVAAKADIFVNATCGEEG-PETFCKPSE-----SSRCAVCDARSPD 103

Query: 62  PGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
           PGK+H+I  +L+ N   WWQSPTL +G +YEYVTI LD+KQV
Sbjct: 104 PGKRHNISNILDSNPGRWWQSPTLAKGDRYEYVTIVLDLKQV 145

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350425118|ref|XP_003494017.1| PREDICTED: laminin subunit alpha-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340709274|ref|XP_003393236.1| PREDICTED: laminin subunit alpha-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332021492|gb|EGI61857.1| Laminin subunit alpha-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|328792763|ref|XP_624587.3| PREDICTED: laminin subunit alpha-1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380023625|ref|XP_003695617.1| PREDICTED: laminin subunit alpha-1-like [Apis florea] Back     alignment and taxonomy information
>gi|307168533|gb|EFN61601.1| Laminin subunit alpha-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322798301|gb|EFZ20047.1| hypothetical protein SINV_13384 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|297489728|ref|XP_002697843.1| PREDICTED: laminin subunit alpha-1 [Bos taurus] gi|296473778|tpg|DAA15893.1| TPA: laminin, alpha 1-like [Bos taurus] Back     alignment and taxonomy information
>gi|358418685|ref|XP_003584020.1| PREDICTED: laminin subunit alpha-1 [Bos taurus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
UNIPROTKB|F1MEG3 3031 LAMA1 "Uncharacterized protein 0.633 0.031 0.534 3e-21
UNIPROTKB|P25391 3075 LAMA1 "Laminin subunit alpha-1 0.62 0.030 0.5 5e-21
UNIPROTKB|F1N8P9 3060 LAMA1 "Uncharacterized protein 0.62 0.030 0.520 8.1e-21
UNIPROTKB|F1NM47 3061 LAMA1 "Uncharacterized protein 0.62 0.030 0.520 8.1e-21
RGD|1307207 3083 Lama1 "laminin, alpha 1" [Ratt 0.62 0.030 0.489 1.3e-20
MGI|MGI:99892 3084 Lama1 "laminin, alpha 1" [Mus 0.62 0.030 0.489 1.3e-20
UNIPROTKB|P24043 3122 LAMA2 "Laminin subunit alpha-2 0.62 0.029 0.5 3.6e-20
UNIPROTKB|F1LXY9 661 Lama2 "Protein Lama2" [Rattus 0.613 0.139 0.494 4.8e-20
MGI|MGI:99912 3106 Lama2 "laminin, alpha 2" [Mus 0.62 0.029 0.5 5.8e-20
UNIPROTKB|F1PVY5 3109 LAMA2 "Uncharacterized protein 0.646 0.031 0.480 5.8e-20
UNIPROTKB|F1MEG3 LAMA1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 267 (99.0 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 54/101 (53%), Positives = 70/101 (69%)

Query:     7 VPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEH-RGKA--DTQCSVCDASSSSP- 62
             V GLFP I N+AS + I  NATCGE G PE YCKL EH  G+A  + QC VCD SS++P 
Sbjct:    19 VNGLFPAILNLASNAHISTNATCGEKG-PETYCKLVEHVPGRAMRNAQCRVCDGSSANPK 77

Query:    63 GKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
              ++H I   ++  N NWWQSP++  G +Y +VTITLD++QV
Sbjct:    78 AERHPISNAIDGTN-NWWQSPSIQNGREYHWVTITLDLRQV 117
GO:0061304 "retinal blood vessel morphogenesis" evidence=IEA
GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IEA
GO:0060441 "epithelial tube branching involved in lung morphogenesis" evidence=IEA
GO:0045198 "establishment of epithelial cell apical/basal polarity" evidence=IEA
GO:0043208 "glycosphingolipid binding" evidence=IEA
GO:0031175 "neuron projection development" evidence=IEA
GO:0007166 "cell surface receptor signaling pathway" evidence=IEA
GO:0005911 "cell-cell junction" evidence=IEA
GO:0005615 "extracellular space" evidence=IEA
GO:0005608 "laminin-3 complex" evidence=IEA
GO:0005606 "laminin-1 complex" evidence=IEA
GO:0005201 "extracellular matrix structural constituent" evidence=IEA
GO:0002011 "morphogenesis of an epithelial sheet" evidence=IEA
GO:0045995 "regulation of embryonic development" evidence=IEA
GO:0030334 "regulation of cell migration" evidence=IEA
GO:0030155 "regulation of cell adhesion" evidence=IEA
GO:0007155 "cell adhesion" evidence=IEA
GO:0005102 "receptor binding" evidence=IEA
UNIPROTKB|P25391 LAMA1 "Laminin subunit alpha-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8P9 LAMA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NM47 LAMA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1307207 Lama1 "laminin, alpha 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:99892 Lama1 "laminin, alpha 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P24043 LAMA2 "Laminin subunit alpha-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LXY9 Lama2 "Protein Lama2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:99912 Lama2 "laminin, alpha 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVY5 LAMA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
pfam00055237 pfam00055, Laminin_N, Laminin N-terminal (Domain V 4e-22
smart00136238 smart00136, LamNT, Laminin N-terminal domain (doma 6e-21
>gnl|CDD|215682 pfam00055, Laminin_N, Laminin N-terminal (Domain VI) Back     alignment and domain information 
 Score = 88.0 bits (218), Expect = 4e-22
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 10  LFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIR 69
            +P   N+A   ++   +TCG   GPE YC L   +   D +C +CD++S +P + H I 
Sbjct: 1   CYPATGNLAINRALSATSTCGL-HGPEPYCILSHLQP-RDKKCFLCDSNSPNPRESHPIS 58

Query: 70  YVLEQNN---MNWWQSPTLHQGPQYEYVTITLDMKQV 103
           ++ +  N     WWQS T+  G QY  VTITLD++  
Sbjct: 59  FLTDTFNPQDTTWWQSETMQNGVQYPNVTITLDLEAE 95

Length = 237
>gnl|CDD|214532 smart00136, LamNT, Laminin N-terminal domain (domain VI) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
smart00136238 LamNT Laminin N-terminal domain (domain VI). N-ter 100.0
PF00055237 Laminin_N: Laminin N-terminal (Domain VI); InterPr 100.0
KOG3512|consensus 592 100.0
KOG0994|consensus 1758 100.0
KOG1836|consensus 1705 99.92
PF00055 237 Laminin_N: Laminin N-terminal (Domain VI); InterPr 96.73
PF00754129 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000 96.28
cd00057143 FA58C Substituted updates: Jan 31, 2002 95.79
cd08366139 APC10 APC10 subunit of the anaphase-promoting comp 95.22
smart00136 238 LamNT Laminin N-terminal domain (domain VI). N-ter 94.57
cd08365131 APC10-like1 APC10-like DOC1 domains of E3 ubiquiti 94.03
cd08666134 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H 93.84
PF03256193 APC10: Anaphase-promoting complex, subunit 10 (APC 93.71
cd08665131 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit 93.66
cd08667131 APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri 93.19
KOG3437|consensus184 92.79
PF0201212 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe 91.8
COG5156189 DOC1 Anaphase-promoting complex (APC), subunit 10 90.77
cd08159129 APC10-like APC10-like DOC1 domains in E3 ubiquitin 89.74
cd08664152 APC10-HERC2 APC10-like DOC1 domain present in HERC 86.54
KOG1836|consensus 1705 84.18
>smart00136 LamNT Laminin N-terminal domain (domain VI) Back     alignment and domain information 
Probab=100.00  E-value=1.1e-48  Score=318.99  Aligned_cols=133  Identities=31%  Similarity=0.561  Sum_probs=120.9

Q ss_pred             CCCCCCCCCcccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCCccceeccC---CCceec
Q psy14224          5 LKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQN---NMNWWQ   81 (150)
Q Consensus         5 ~~~~~C~P~~~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~ltD~~---~~TwWQ   81 (150)
                      -++++|+|+|+|||+||+|.|+||||++ +||+||.++... ....+|++||++  +|.++||+++|+|.+   +.||||
T Consensus         2 ~~~~~C~P~~~nla~g~~v~assTCG~~-~pe~yC~~~~~~-~~~~~C~~CDa~--~p~~~Hp~~~l~D~~~~~~~TwWQ   77 (238)
T smart00136        2 GRPRSCYPPFVNLAFGREVTATSTCGEP-GPERYCKLVGHT-EQGKKCDYCDAR--NPRRSHPAENLTDGNNPNNPTWWQ   77 (238)
T ss_pred             CCCccccCchhhhhcCCeeeEecCCCCC-CCcceeEecccc-CcCCcCCCCCCC--CccccCCHHHhhccCCCCCCceec
Confidence            3689999999999999999999999997 899999986332 235899999999  899999999999998   479999


Q ss_pred             CCcCCCCCCCcceEEEeccCceeec-------cCCCCCCeeeeEeecCCCCcccccccccccCCCCCcee
Q psy14224         82 SPTLHQGPQYEYVTITLDMKQVCPH-------IDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVT  144 (150)
Q Consensus        82 S~~~~~g~~~~~VtItLdL~~~f~~-------~sprP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~v~  144 (150)
                      |+++.+|+  ++|||||||||.|||       ++|||++|+|||| |+|++|+||||||.+|.+.|+..+
T Consensus        78 S~~~~~~~--~~VtitLdL~k~fevtyi~l~F~s~RPa~~i~erS-d~G~tW~p~qyfa~dC~~~f~~~~  144 (238)
T smart00136       78 SEPLSNGP--QNVNLTLDLGKEFHVTYVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPP  144 (238)
T ss_pred             CCCcCCCC--ccEEEEEecCCEEEEEEEEEEecCCCCceEEEeec-CCCCCCcEeeeeecchhhhcCCCC
Confidence            99999888  589999999999996       8999999999997 999999999999999999997654

N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue Back     alignment and domain information
>KOG3512|consensus Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue Back     alignment and domain information
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain Back     alignment and domain information
>cd00057 FA58C Substituted updates: Jan 31, 2002 Back     alignment and domain information
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination Back     alignment and domain information
>smart00136 LamNT Laminin N-terminal domain (domain VI) Back     alignment and domain information
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination Back     alignment and domain information
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase Back     alignment and domain information
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination Back     alignment and domain information
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs Back     alignment and domain information
>KOG3437|consensus Back     alignment and domain information
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes Back     alignment and domain information
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination Back     alignment and domain information
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2) Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
2y38_A 403 Laminin Alpha5 Chain N-Terminal Fragment Length = 4 2e-09
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment Length = 403 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 19/110 (17%)
Query: 10  LFPPIFNVASKSSIVVNATCGE------VGGP--EVYCKLKEH--RGKADTQ------CS 53
           L PP FN+A  + I  +ATCGE      V  P  ++YCKL      G    Q      C 
Sbjct: 11  LHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYCD 70
Query: 54  VCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
           +C A++S+  K H +   ++     WWQSP L +G +Y  V +TLD+ QV
Sbjct: 71  ICTAANSN--KAHPVSNAID-GTERWWQSPPLSRGLEYNEVNVTLDLGQV 117

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
2y38_A 403 Laminin subunit alpha-5; structural protein, cell 3e-16
4aqt_A 375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 4e-16
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 6e-13
3tbd_A 338 Netrin-G2, laminet-2; laminin N-terminal domain, d 2e-12
3zyj_B 426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 6e-12
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Length = 403 Back     alignment and structure
 Score = 73.4 bits (179), Expect = 3e-16
 Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 19/111 (17%)

Query: 9   GLFPPIFNVASKSSIVVNATCGEVG--------GPEVYCKLKEHRGKADT--------QC 52
            L PP FN+A  + I  +ATCGE            ++YCKL                  C
Sbjct: 10  SLHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYC 69

Query: 53  SVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYVTITLDMKQV 103
            +C A++    K H +   +      WWQSP L +G +Y  V +TLD+ QV
Sbjct: 70  DICTAAN--SNKAHPVSNAI-DGTERWWQSPPLSRGLEYNEVNVTLDLGQV 117
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Length = 375 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525 Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Length = 338 Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
4aqt_A 375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 100.0
2y38_A 403 Laminin subunit alpha-5; structural protein, cell 100.0
3tbd_A 338 Netrin-G2, laminet-2; laminin N-terminal domain, d 100.0
3zyj_B 426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 100.0
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 100.0
4a3z_A161 GH89_CBM32, alpha-N-acetylglucosaminidase family p 98.13
3lei_A153 Platelet aggregation factor SM-HPAF; lectin domain 97.63
4gwi_A153 Lectinolysin, platelet aggregation factor SM-HPAF; 97.49
4a41_A161 GH89_CBM32-5, alpha-N-acetylglucosaminidase family 97.33
2jda_A145 Yecbm32; hypothetical protein, carbohydrate- bindi 97.28
4a4a_A 914 Alpha-N-acetylglucosaminidase family protein; hydr 97.27
3eyp_A469 Putative alpha-L-fucosidase; structural genomics, 97.27
3f2z_A159 Uncharacterized protein BF3579; the present C-term 97.25
2yc2_A139 IFT25, intraflagellar transport protein 25; transp 97.12
3ggl_A169 Putative chitobiase; X-RAY, structure genomics, NE 97.06
1tvg_A153 LOC51668 protein; cell cycle, structural genomics, 97.04
2j1a_A150 Hyaluronidase, CBM32; protein-carbohydrate interac 96.87
3hnm_A172 Putative chitobiase; PSI-2, protein structure init 96.8
1k12_A158 Lectin; beta barrel, protein carbohydrate complex, 96.43
2y38_A 403 Laminin subunit alpha-5; structural protein, cell 96.27
4aqt_A 375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 96.26
4a42_A149 GH89_CBM32-4, alpha-N-acetylglucosaminidase family 96.24
2j1v_A151 Fucolectin-related protein; carbohydrate-binding p 96.05
3cqo_A293 FBP32; F-lectin, fucolectin, sugar binding protein 95.7
3cqo_A 293 FBP32; F-lectin, fucolectin, sugar binding protein 95.6
1w8o_A601 Bacterial sialidase; 3D-structure, glycosidase, hy 95.44
2j22_A148 Fucolectin-related protein; carbohydrate-binding p 95.1
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 94.83
3zyj_B 426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 94.13
1jhj_A171 APC10; beta sandwich, jellyroll, cell cycle; 1.60A 93.96
2v5d_A737 O-GLCNACASE NAGJ; family 32 carbohydrate binding m 93.86
2v72_A143 CBM32, EXO-alpha-sialidase; galactose, bacterial p 93.22
3ues_A478 Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydr 93.12
3tbd_A 338 Netrin-G2, laminet-2; laminin N-terminal domain, d 92.8
1gqp_A221 DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, 91.42
4aqs_A 525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 88.89
2zxq_A1376 Endo-alpha-N-acetylgalactosaminidase; broken TIM b 88.68
2cho_A716 Glucosaminidase, hexosaminiase; O-GLCNACASE, hydro 84.03
2qqi_A318 Neuropilin-1; VEGF receptor, semaphorin receptor, 80.71
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=7.6e-48  Score=329.86  Aligned_cols=136  Identities=24%  Similarity=0.434  Sum_probs=122.2

Q ss_pred             CCCCCCCCCCcccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCCccceeccC---CCcee
Q psy14224          4 ELKVPGLFPPIFNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQN---NMNWW   80 (150)
Q Consensus         4 ~~~~~~C~P~~~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~ltD~~---~~TwW   80 (150)
                      .-+|++|+|+|+|||+||+|.|+||||+  +||+||++++.... .++|++||++  +|.++||+++|+|.+   +.|||
T Consensus        13 ~~~p~~C~P~~~N~a~~~~i~assTCG~--~pe~yC~~~~~~~~-~~~C~~Cda~--~p~~~Hp~~~~~D~~~~~~~TwW   87 (375)
T 4aqt_A           13 GGRPQRCMPEFVNAAFNVTVVATNTCGT--PPEEYCVQTGVTGV-TKSCHLCDAG--QQHLQHGAAFLTDYNNQADTTWW   87 (375)
T ss_dssp             TCCBCCCCCCCEETTTTCCCEESCCTTS--SCEEEECCC----C-CCCEEEECSS--STTTCCCGGGGSSCCCSSSCCCE
T ss_pred             CCCcCccCCchhhhccCCeeeEecCCCC--CCcCeEEecCCccc-CCcCCccCCC--ChhhhCCHhheeccCCCCCCceE
Confidence            4689999999999999999999999996  89999999865432 4789999999  899999999999987   57999


Q ss_pred             cCCcCCCCCCC-cceEEEeccCceeec-------cCCCCCCeeeeEeecCCCCcccccccccccCCCCCcee
Q psy14224         81 QSPTLHQGPQY-EYVTITLDMKQVCPH-------IDRRPSTIMCRRYALEQNNMNWWQSPTLHQGPQYEYVT  144 (150)
Q Consensus        81 QS~~~~~g~~~-~~VtItLdL~~~f~~-------~sprP~s~~iers~d~G~tw~pwQ~~s~~~~~~y~~v~  144 (150)
                      ||+++.+|.++ ++|||||||+++|+|       .++||++|+||||+|+|+||+||||||.+|...|+.++
T Consensus        88 QS~~~~~~~~~~~~VtitLdL~~~f~~t~v~i~F~~~rP~~m~Iers~d~G~tw~p~qyfa~~C~~~f~~~~  159 (375)
T 4aqt_A           88 QSQTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGPWIPYQYYSGSCENTYSKAN  159 (375)
T ss_dssp             ECCCGGGTCSSSCCEEEEEEEEEEEEEEEEEEEESSSCCSEEEEEEESSSSSCCEEEEEEETTHHHHHSCCT
T ss_pred             ECCCccccCCCCcceEEEEcCCCeEEEEEEEEEecCCCCCcEEEEEecCCCCCccceeeeecchhHhcCCCC
Confidence            99999988887 589999999999995       79999999999999999999999999999998887553
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A* Back     alignment and structure
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A* Back     alignment and structure
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A* Back     alignment and structure
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A Back     alignment and structure
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A Back     alignment and structure
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A Back     alignment and structure
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A Back     alignment and structure
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A Back     alignment and structure
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A* Back     alignment and structure
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15 Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens} Back     alignment and structure
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A* Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis} Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Back     alignment and structure
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens} Back     alignment and structure
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens} Back     alignment and structure
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A* Back     alignment and structure
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B* Back     alignment and structure
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Back     alignment and structure
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A* Back     alignment and structure
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d1k12a_158 Fucose binding lectin {European eel (Anguilla angu 97.48
d1w8oa2142 Sialidase, C-terminal domain {Micromonospora virid 97.39
d1jhja_161 APC10/DOC1 subunit of the anaphase-promoting compl 97.38
d1k3ia2162 Galactose oxidase, N-terminal domain {Fungi (Fusar 97.37
d1tvga_136 Placental protein 25, pp25 {Human (Homo sapiens) [ 97.14
d1gqpa_194 APC10/DOC1 subunit of the anaphase-promoting compl 97.08
>d1k12a_ b.18.1.15 (A:) Fucose binding lectin {European eel (Anguilla anguilla) [TaxId: 7936]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Fucose binding lectin
domain: Fucose binding lectin
species: European eel (Anguilla anguilla) [TaxId: 7936]

Probab=97.48  E-value=0.00022  Score=50.26  Aligned_cols=84  Identities=12%  Similarity=-0.012  Sum_probs=56.0

Q ss_pred             ccccCCCceeeecccCCCCCCeeeeEeccCCCCCCCccccccCCCCCCCCCCCccceeccCCCceecCCcCCCCCCCcce
Q psy14224         15 FNVASKSSIVVNATCGEVGGPEVYCKLKEHRGKADTQCSVCDASSSSPGKKHSIRYVLEQNNMNWWQSPTLHQGPQYEYV   94 (150)
Q Consensus        15 ~NlA~gr~i~assTCG~~~~~e~yC~~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~ltD~~~~TwWQS~~~~~g~~~~~V   94 (150)
                      .|||+|+++.++|+=...   .                   .       ....+++.+|++..|.|.|..-.......+.
T Consensus         9 ~NiAl~k~at~SS~~~~~---~-------------------~-------~~~~a~~AvDG~~~t~w~s~~~~~T~~~~~~   59 (158)
T d1k12a_           9 ENVAVRGKATQSAQLRGE---H-------------------A-------ANSEASNAIDGNRDSNFYHGSCTHSSGQANP   59 (158)
T ss_dssp             EEGGGGSEEEESCBCCST---T-------------------G-------GGCCGGGGGSSCCCCCGGGSCSCCBCSCSSC
T ss_pred             ccCcCCCceeEcceecCC---C-------------------C-------CCCCHHHcCCCCccCCccccccccCCCCCCc
Confidence            599999999998875421   0                   0       0134789999997788876532211111356


Q ss_pred             EEEeccCceeec-----------cCCCCCCeeeeEeecCCCCccc
Q psy14224         95 TITLDMKQVCPH-----------IDRRPSTIMCRRYALEQNNMNW  128 (150)
Q Consensus        95 tItLdL~~~f~~-----------~sprP~s~~iers~d~G~tw~p  128 (150)
                      -++||||+.+.|           ...|+..+.|+- ++++.+|..
T Consensus        60 W~~VDLg~~~~i~~v~i~~r~d~~~~~~~~~~i~v-s~d~~~~~~  103 (158)
T d1k12a_          60 WWRVDLLQVYTITSVTITNRGDCCGERISGAEINI-GQHLASNGV  103 (158)
T ss_dssp             EEEEEEEEEEEEEEEEEEECSSSCTTTTTTCEEEE-ESSCTTTTT
T ss_pred             EEEEEcCCceEeeEEEEEcccccccccccceeEEe-ccCccccce
Confidence            788899999986           246677788886 577776643
>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure