Psyllid ID: psy14303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVGT
Secondary Structure (PSIPRED)
cccEEEEcccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHEEEcHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHccc
Coil and Loop (DISEMBL)
mkalvydepkgfcsvgsyirdAACYVCWAFAraydhhtlePLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVgrqggnppygidiltradyfsvgnrqsayLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLtaktlprlvpldreyfltevgt
Flexible Loop (DISEMBL)
mkalvydepkgfcSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRkltaktlprlvpldreyfltevgt
Low Complexity Region (SEG)
MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVGT
Disordered region (IsUnstruct)
****VYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT****
Disordered Region (DISOPRED)
*KALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVG*
Disordered Region (DISEMBL)
MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVGT
Disordered Region (DISPRO)
MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q5ZI87	1019	Tubulin-specific chaperon	yes	N/A	0.956	0.151	0.593	5e-49
Q8BYA0	1196	Tubulin-specific chaperon	yes	N/A	0.981	0.132	0.572	9e-49
Q9BTW9	1192	Tubulin-specific chaperon	yes	N/A	0.981	0.132	0.572	3e-48
Q28205	1199	Tubulin-specific chaperon	yes	N/A	0.981	0.131	0.572	6e-48
Q55G93	1480	Tubulin-specific chaperon	yes	N/A	0.937	0.102	0.453	1e-37
Q10197	1105	Tubulin-folding cofactor	yes	N/A	0.888	0.129	0.331	7e-18
P40987	1014	Chromosome instability pr	yes	N/A	0.378	0.060	0.354	0.0003

>sp|Q5ZI87|TBCD_CHICK Tubulin-specific chaperone D OS=Gallus gallus GN=TBCD PE=2 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 112/155 (72%), Gaps = 1/155 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           +KAL YDE +G CSVGS +RDAACY+ WAFARAYD   L P + QI+  L++   +D+++
Sbjct: 448 LKALTYDEKRGSCSVGSNLRDAACYLSWAFARAYDPSELIPFINQISSALVIAAVFDRDV 507

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ G  P+GIDILT ADYF+VGNR + YL ISVYIA F  YT+P 
Sbjct: 508 NCRRAASAAFQENVGRQ-GTFPHGIDILTAADYFAVGNRVNCYLTISVYIAGFPEYTQPM 566

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155
           I HL+  K+ HWD  IR+L+ K L  L P   EY 
Sbjct: 567 IDHLVNMKINHWDSVIRELSTKALHNLTPRAPEYM 601

Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubule dynamics by capturing GTP-bound beta-tubulin (TUBB). Increases degradation of beta tubulin, when overexpressed in polarized cells. Induces tight adherens and tight junctions disassembly at the lateral cell membrane.
Gallus gallus (taxid: 9031)

>sp|Q8BYA0|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus GN=Tbcd PE=2 SV=1

 Score =  192 bits (488), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 114/159 (71%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           +KAL YDE +G CSVG+ +RDAACYVCWAFARAY+   L P V  I+  L++   +D+ +
Sbjct: 447 LKALTYDEKRGACSVGANVRDAACYVCWAFARAYEPQELTPFVTAISSALVIAAVFDRNV 506

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ G  P+GIDILT ADYF+VGN  + +L ISV+IA F+ YT+P 
Sbjct: 507 NCRRAASAAFQENVGRQ-GTFPHGIDILTTADYFAVGNISNCFLIISVFIAGFQEYTKPM 565

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL++ K+ HWD  IR+L+AK L  L P   EY    V
Sbjct: 566 IDHLVSMKINHWDGAIRELSAKALHNLTPQVPEYIAMHV 604

Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubule dynamics by capturing GTP-bound beta-tubulin (TUBB). Acts as a GTPase-activating protein (GAP) for ARL2. Its ability to interact with beta tubulin is regulated via its interaction with ARL2. Induces microtubule disruption in absence of ARL2. Increases degradation of beta tubulin, when overexpressed in polarized cells. Promotes epithelial cell detachment, a process antagonized by ARL2. Induces tight adherens and tight junctions disassembly at the lateral cell membrane.

Mus musculus (taxid: 10090)

>sp|Q9BTW9|TBCD_HUMAN Tubulin-specific chaperone D OS=Homo sapiens GN=TBCD PE=1 SV=2

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 115/159 (72%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           +KAL YDE +G CSVG+ +RDAACYVCWAFARAY+   L+P V  I+  L++   +D++I
Sbjct: 445 LKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIAAVFDRDI 504

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ G  P+GIDILT ADYF+VGNR + +L ISV+IA F  YT+P 
Sbjct: 505 NCRRAASAAFQENVGRQ-GTFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPM 563

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL+  K+ HWD  IR+L A+ L  L     E+  T+V
Sbjct: 564 IDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSATQV 602

Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubule dynamics by capturing GTP-bound beta-tubulin (TUBB). Acts as a GTPase-activating protein (GAP) for ARL2. Its ability to interact with beta tubulin is regulated via its interaction with ARL2. Induces microtubule disruption in absence of ARL2. Increases degradation of beta tubulin, when overexpressed in polarized cells. Promotes epithelial cell detachment, a process antagonized by ARL2. Induces tight adherens and tight junctions disassembly at the lateral cell membrane.

Homo sapiens (taxid: 9606)

>sp|Q28205|TBCD_BOVIN Tubulin-specific chaperone D OS=Bos taurus GN=TBCD PE=1 SV=1

 Score =  189 bits (480), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++AL Y+E +G CSVGS +RDAACYVCWAFARAY+   L+P V  I+  L++ T +D+++
Sbjct: 452 LRALTYEEKRGACSVGSNVRDAACYVCWAFARAYEPQELKPFVAAISSALVIATVFDRDV 511

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ G  P+GIDILT ADYF+VGNR + +L IS++IA F  YT+P 
Sbjct: 512 NCRRAASAAFQENVGRQ-GTFPHGIDILTTADYFAVGNRSNCFLVISMFIAGFPEYTQPM 570

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I+HL+  KV HWD  IR+L+AK L  L     E+   EV
Sbjct: 571 IEHLVTMKVGHWDGTIRELSAKALRNLAQRAPEHTAREV 609

Tubulin-folding protein; involved in the first step of the tubulin folding pathway. Modulates microtubule dynamics by capturing GTP-bound beta-tubulin (TUBB). Acts as a GTPase-activating protein (GAP) for ARL2. Its ability to interact with beta tubulin is regulated via its interaction with ARL2. Induces microtubule disruption in absence of ARL2. Increases degradation of beta tubulin, when overexpressed in polarized cells. Promotes epithelial cell detachment, a process antagonized by ARL2. Induces tight adherens and tight junctions disassembly at the lateral cell membrane.

Bos taurus (taxid: 9913)

>sp|Q55G93|TBCD_DICDI Tubulin-specific chaperone D OS=Dictyostelium discoideum GN=tbcd PE=3 SV=2

 Score =  155 bits (391), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/152 (45%), Positives = 108/152 (71%), Gaps = 1/152 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++AL +D  KG  S+GS++RD+ACY+CWA AR Y +  L P +  I + L+VV+ YD+EI
Sbjct: 571 IRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREI 630

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCR++ASAAFQE+VGR  G  P GI+I+T AD+F+VGN+ +++  ++ +I +F+    P 
Sbjct: 631 NCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPI 690

Query: 121 -IQHLMARKVEHWDPEIRKLTAKTLPRLVPLD 151
            I+HL   K+ +WD EIR+L +K++  L  ++
Sbjct: 691 VIKHLATIKIYNWDLEIRQLASKSIHLLTNIN 722

Tubulin-folding protein; involved in the first step of the tubulin folding pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q10197|ALP1_SCHPO Tubulin-folding cofactor D OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp1 PE=1 SV=3

 Score = 89.7 bits (221), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 2/145 (1%)

Query: 3   ALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINC 62
            L Y+   G    G  IRDA+CY  W+F   Y    +E L   +   LL    +D EIN 
Sbjct: 413 GLSYEVRYGTRVTGQSIRDASCYFVWSFYHCYSKSAIEGLQTNLILCLLQTVLFDNEINV 472

Query: 63  RRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQ 122
           RRAA+AA  E++GR    P  G+ +++  +Y SV +  + Y D+ + +A F  +     Q
Sbjct: 473 RRAATAALFEVIGRHASIPD-GLSLISHINYVSVTDISNCYGDLCMKVAHFPQFRSCVFQ 531

Query: 123 HLMARKVEHWDPEIRKLTAKTLPRL 147
            L    ++HWD ++++L+A +L +L
Sbjct: 532 RLFT-NLQHWDVKVQQLSAFSLRQL 555

Has a function in the folding of beta-tubulin. Microtubule-associated protein that is essential to direct polarized cell growth and to position the nucleus and septum to the center of the cell during mitosis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40987|CIN1_YEAST Chromosome instability protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CIN1 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 16  GSYIRDAACYVCWAFARAYDHHTLEPLV-QQIAQGLLVVTCYDKEINCRRAASAAFQELV 74
           G +IRD+  ++ W+  R+   ++L P V Q +   LL+   +D E+  R ++ AA QEL+
Sbjct: 353 GHHIRDSTNFIIWSVIRSNRSNSLSPQVLQSLLSHLLINAFFDPELIIRYSSFAALQELL 412

Query: 75  GR 76
           GR
Sbjct: 413 GR 414

Required for microtubule stability. Interacts with CIN4.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
91091872	1150	PREDICTED: similar to beta-tubulin cofac	0.981	0.137	0.679	6e-56
383858026	1151	PREDICTED: tubulin-specific chaperone D	0.956	0.133	0.651	4e-53
307182202	1143	Tubulin-specific chaperone D [Camponotus	0.981	0.138	0.622	4e-52
345484594	1107	PREDICTED: tubulin-specific chaperone D-	0.981	0.142	0.591	4e-51
328790615	1152	PREDICTED: tubulin-specific chaperone D-	0.981	0.137	0.610	4e-51
380018971	1152	PREDICTED: tubulin-specific chaperone D-	0.956	0.133	0.619	4e-51
332026888	1156	Tubulin-specific chaperone D [Acromyrmex	0.981	0.136	0.610	6e-51
307199442	1126	Tubulin-specific chaperone D [Harpegnath	0.981	0.140	0.610	2e-50
193587458	1166	PREDICTED: tubulin-specific chaperone D	0.925	0.127	0.613	1e-49
223648078	1193	Tubulin-specific chaperone D [Salmo sala	0.981	0.132	0.616	2e-49

>gi|91091872|ref|XP_969240.1| PREDICTED: similar to beta-tubulin cofactor D [Tribolium castaneum] gi|270000809|gb|EEZ97256.1| hypothetical protein TcasGA2_TC011056 [Tribolium castaneum]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 124/159 (77%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           +KALVYDEP+G+ SVGS+IRDAACYVCWAFARAYD   L+P V QIA  LL+V C+D+EI
Sbjct: 433 LKALVYDEPRGYSSVGSHIRDAACYVCWAFARAYDKDVLKPFVNQIAANLLIVACFDREI 492

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ G  PYGIDILT AD+F+V  R +AYL IS YIAQF  YT P 
Sbjct: 493 NCRRAASAAFQENVGRQ-GTFPYGIDILTVADFFTVSVRNNAYLTISPYIAQFGEYTIPM 551

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL+ RKV+HWD  IR+LTAK L  L P   EY +T+V
Sbjct: 552 IDHLVGRKVDHWDCVIRELTAKALHNLTPKAPEYMVTKV 590

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858026|ref|XP_003704504.1| PREDICTED: tubulin-specific chaperone D [Megachile rotundata]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/155 (65%), Positives = 121/155 (78%), Gaps = 1/155 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++ALV+DEP+ + S+G  IRDAACYVCWAFARAYD    +P V++IA  LLVVTC+D+EI
Sbjct: 423 VQALVFDEPRAYGSIGYLIRDAACYVCWAFARAYDSDVFQPYVKEIAAMLLVVTCFDREI 482

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ GN P+GI+ILT ADYF VG R  AYL IS  IAQ+E YT+P 
Sbjct: 483 NCRRAASAAFQENVGRQ-GNFPHGIEILTIADYFEVGVRNHAYLKISTQIAQYEEYTKPL 541

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155
           I HL+ARKV HWD  +R+L+AK L  L P+D  YF
Sbjct: 542 IDHLVARKVTHWDTALRELSAKALFNLTPIDPNYF 576

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182202|gb|EFN69536.1| Tubulin-specific chaperone D [Camponotus floridanus]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 121/159 (76%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++ALV+DEP+ + S+G  IRDAACY+CW+F RAYD H  EP V++IA  LLVVTC+D+EI
Sbjct: 415 LQALVFDEPRAYGSIGYLIRDAACYICWSFPRAYDPHVFEPYVKEIAAMLLVVTCFDREI 474

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ GN P+GIDILT ADYF VG R   YL ISV IAQ+E YT+P 
Sbjct: 475 NCRRAASAAFQENVGRQ-GNFPHGIDILTVADYFEVGVRSHTYLKISVQIAQYEEYTKPL 533

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL+A+KV HWD  IR+L+A++L  L   D  Y +  V
Sbjct: 534 IDHLVAKKVTHWDTAIRELSARSLFNLTAADPHYMVNTV 572

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484594|ref|XP_003425081.1| PREDICTED: tubulin-specific chaperone D-like [Nasonia vitripennis]

 Score =  206 bits (523), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 121/159 (76%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++ALV+DEP+ +  VGS IRDAAC+VCW+FARA++ H  EP V++IA  LL+VTC+D+EI
Sbjct: 380 IQALVFDEPRAYGPVGSIIRDAACFVCWSFARAFEPHVFEPYVKEIAPALLIVTCFDREI 439

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRA SAAFQE VGRQ GN P+GIDI+  ADYF VG R +A+L ISV++A++E Y +P 
Sbjct: 440 NCRRAGSAAFQENVGRQ-GNFPHGIDIIAAADYFEVGVRSNAFLKISVHVAKYEGYLKPL 498

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           + HL+ RKV HWD  IR+L AK L  L  LD  Y + EV
Sbjct: 499 VDHLVKRKVTHWDVAIRELAAKALHNLTELDTSYMIEEV 537

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790615|ref|XP_001121704.2| PREDICTED: tubulin-specific chaperone D-like [Apis mellifera]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 120/159 (75%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++ALV+DEP+ + S+G  IRDAACY+CW+F RAYD   ++P V++IA  LLVVTC+D+EI
Sbjct: 424 LQALVFDEPRAYGSIGYLIRDAACYICWSFPRAYDPDIIQPYVKEIAAMLLVVTCFDREI 483

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ GN P+GI+ILT ADYF VG R  AYL IS  IAQ+E YT+  
Sbjct: 484 NCRRAASAAFQENVGRQ-GNFPHGIEILTIADYFEVGVRNHAYLKISTQIAQYEEYTKSL 542

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL+ RK+ HWD  IR+L+AKTL  L P+D  Y    V
Sbjct: 543 IDHLITRKITHWDTAIRELSAKTLFNLTPIDSNYIRNTV 581

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018971|ref|XP_003693392.1| PREDICTED: tubulin-specific chaperone D-like [Apis florea]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/155 (61%), Positives = 119/155 (76%), Gaps = 1/155 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++ALV+DEP+ + S+G  IRDAACY+CW+F RAYD   ++P V++IA  LLVVTC+D+EI
Sbjct: 424 LQALVFDEPRAYGSIGYLIRDAACYICWSFPRAYDPDIIQPYVKEIAAMLLVVTCFDREI 483

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ GN P+GI+ILT ADYF VG R  AYL IS  IAQ+E YT+  
Sbjct: 484 NCRRAASAAFQENVGRQ-GNFPHGIEILTIADYFEVGVRNHAYLKISTQIAQYEEYTKSL 542

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF 155
           I HL+ RK+ HWD  IR+L+AKTL  L P+D  Y 
Sbjct: 543 IDHLITRKITHWDTAIRELSAKTLFNLTPIDSNYI 577

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026888|gb|EGI66989.1| Tubulin-specific chaperone D [Acromyrmex echinatior]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 120/159 (75%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++ALV+DEP+ + S+G  IRDAACY+CW+F RAYD H  E  V++IA  LLVVTC+D+EI
Sbjct: 427 LQALVFDEPRAYGSIGYLIRDAACYICWSFPRAYDPHVFECYVKEIAAMLLVVTCFDREI 486

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ GN P+GIDILT ADYF VG R   YL IS+ IAQ+E YT+P 
Sbjct: 487 NCRRAASAAFQENVGRQ-GNFPHGIDILTVADYFEVGVRSHTYLKISIQIAQYEEYTKPL 545

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL+A+KV HWD  IR+L+A++L  L   D  Y +  V
Sbjct: 546 IDHLVAKKVTHWDTAIRELSARSLFNLTVTDAHYMINTV 584

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199442|gb|EFN80055.1| Tubulin-specific chaperone D [Harpegnathos saltator]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 119/159 (74%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           ++ALV+DEP+ + S+G  IRDAACY+CW+F RAYD H  EP V++IA  LLVVTC+D+EI
Sbjct: 395 LQALVFDEPRAYGSIGYLIRDAACYICWSFPRAYDPHIFEPYVKEIAAMLLVVTCFDREI 454

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ GN P+GIDILT ADYF VG R   YL +SV IAQ+E YT+P 
Sbjct: 455 NCRRAASAAFQENVGRQ-GNFPHGIDILTVADYFEVGVRSHTYLKVSVQIAQYEEYTKPL 513

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL+A+KV HWD  IR+L A++L      D  Y +  V
Sbjct: 514 IDHLVAKKVTHWDTAIRELAARSLFNQTAADPYYMIDMV 552

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193587458|ref|XP_001950790.1| PREDICTED: tubulin-specific chaperone D [Acyrthosiphon pisum]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 119/150 (79%), Gaps = 1/150 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           +KALVYDEPKG+ SVGS+IRDAACYVCW+FARA+    ++P V++IA  LL V CYD+E+
Sbjct: 433 IKALVYDEPKGYTSVGSHIRDAACYVCWSFARAFSTDDIQPYVEEIAGALLAVACYDREL 492

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
            CRRAASAAFQE VGRQ G  P+GI+I+T ADYFSVG R +AYL++S++IAQ++ Y +  
Sbjct: 493 TCRRAASAAFQENVGRQ-GKFPHGIEIVTAADYFSVGMRNNAYLEVSIFIAQYKEYDKLL 551

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPL 150
           I+HL+ +K+ HWD  IR+L A  L RLV L
Sbjct: 552 IKHLLEKKIVHWDTSIRELAAMALGRLVEL 581

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|223648078|gb|ACN10797.1| Tubulin-specific chaperone D [Salmo salar]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 114/159 (71%), Gaps = 1/159 (0%)

Query: 1   MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
           +KALVYDE +G CSVGS +RDAACYVCWAFARAY+   L+P V QIA  L++   +D+ I
Sbjct: 447 LKALVYDEKRGACSVGSNVRDAACYVCWAFARAYEPTELKPFVTQIACALVITAVFDRNI 506

Query: 61  NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
           NCRRAASAAFQE VGRQ G  PYGIDI+  ADYF+VGN  + YL ISVYIA F  YTRP 
Sbjct: 507 NCRRAASAAFQENVGRQ-GTFPYGIDIVVAADYFAVGNLNNCYLTISVYIASFPEYTRPM 565

Query: 121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
           I HL+A K+ HWD  IR+L  K L  L P   +Y  T V
Sbjct: 566 IDHLVAMKINHWDGVIRQLATKALHNLTPQAPDYMATTV 604

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
UNIPROTKB|Q5ZI87	1019	TBCD "Tubulin-specific chapero	0.981	0.155	0.584	6.8e-45
UNIPROTKB|H9GWC8	1138	TBCD "Uncharacterized protein"	0.981	0.138	0.584	7e-45
UNIPROTKB|E1BU18	1199	TBCD "Tubulin-specific chapero	0.981	0.131	0.584	7.9e-45
FB|FBgn0027509	1189	CG7261 [Drosophila melanogaste	0.981	0.132	0.584	9.9e-45
MGI|MGI:1919686	1196	Tbcd "tubulin-specific chapero	0.981	0.132	0.572	2.1e-44
UNIPROTKB|Q9BTW9	1192	TBCD "Tubulin-specific chapero	0.981	0.132	0.572	3.4e-44
UNIPROTKB|Q28205	1199	TBCD "Tubulin-specific chapero	0.981	0.131	0.572	4.4e-44
UNIPROTKB|F1RZZ1	1198	TBCD "Uncharacterized protein"	0.981	0.131	0.553	1.9e-43
TAIR|locus:2101856	1254	TTN1 "TITAN 1" [Arabidopsis th	0.981	0.125	0.515	4e-39
WB|WBGene00008887	1232	F16D3.4 [Caenorhabditis elegan	0.894	0.116	0.406	5.8e-27

UNIPROTKB|Q5ZI87 TBCD "Tubulin-specific chaperone D" [Gallus gallus (taxid:9031)]

 Score = 482 (174.7 bits), Expect = 6.8e-45, P = 6.8e-45
 Identities = 93/159 (58%), Positives = 113/159 (71%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             +KAL YDE +G CSVGS +RDAACY+ WAFARAYD   L P + QI+  L++   +D+++
Sbjct:   448 LKALTYDEKRGSCSVGSNLRDAACYLSWAFARAYDPSELIPFINQISSALVIAAVFDRDV 507

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGRQG   P+GIDILT ADYF+VGNR + YL ISVYIA F  YT+P 
Sbjct:   508 NCRRAASAAFQENVGRQG-TFPHGIDILTAADYFAVGNRVNCYLTISVYIAGFPEYTQPM 566

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I HL+  K+ HWD  IR+L+ K L  L P   EY    V
Sbjct:   567 IDHLVNMKINHWDSVIRELSTKALHNLTPRAPEYMANVV 605

GO:0005737 "cytoplasm" evidence=IEA

GO:0043547 "positive regulation of GTPase activity" evidence=ISS

GO:0005096 "GTPase activator activity" evidence=ISS

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISS

GO:0048487 "beta-tubulin binding" evidence=ISS

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISS

GO:0010812 "negative regulation of cell-substrate adhesion" evidence=ISS

GO:0034333 "adherens junction assembly" evidence=ISS

GO:0070830 "tight junction assembly" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0005923 "tight junction" evidence=ISS

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

UNIPROTKB|H9GWC8 TBCD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 483 (175.1 bits), Expect = 7.0e-45, P = 7.0e-45
 Identities = 93/159 (58%), Positives = 116/159 (72%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             +KAL Y+E +G CSVG+ +RDAACYVCWAFARAY+   L+P V  I+  L++ T +D+ I
Sbjct:   387 LKALTYEEKRGSCSVGTNVRDAACYVCWAFARAYEPRELQPFVAAISSALVIATVFDRNI 446

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGRQG   P+GIDILT ADYF+VGNR + +L IS++IA F  YT+P 
Sbjct:   447 NCRRAASAAFQENVGRQG-TFPHGIDILTAADYFAVGNRANCFLVISMFIAGFPEYTQPM 505

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I HL+A K+ HWD  IR+L+AK L  L     EY  T V
Sbjct:   506 IDHLVAMKINHWDGVIRELSAKALHNLAQRAPEYSATHV 544

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

UNIPROTKB|E1BU18 TBCD "Tubulin-specific chaperone D" [Gallus gallus (taxid:9031)]

 Score = 483 (175.1 bits), Expect = 7.9e-45, P = 7.9e-45
 Identities = 93/159 (58%), Positives = 113/159 (71%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             +KAL YDE +G CSVGS +RDAACY+ WAFARAYD   L P + QI+  L++   +D+++
Sbjct:   450 LKALTYDEKRGSCSVGSNVRDAACYLSWAFARAYDPSELIPFINQISSALVIAAVFDRDV 509

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGRQG   P+GIDILT ADYF+VGNR + YL ISVYIA F  YT+P 
Sbjct:   510 NCRRAASAAFQENVGRQG-TFPHGIDILTAADYFAVGNRVNCYLTISVYIAGFPEYTQPM 568

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I HL+  K+ HWD  IR+L+ K L  L P   EY    V
Sbjct:   569 IDHLVNMKINHWDSVIRELSTKALHNLTPRAPEYMANVV 607

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0048487 "beta-tubulin binding" evidence=IEA

FB|FBgn0027509 CG7261 [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 9.9e-45, P = 9.9e-45
 Identities = 93/159 (58%), Positives = 117/159 (73%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             M+AL YDE KG+ SVG +IRD+ACY+CWAFARAY+   ++P V +I+ GLL V  +D+E+
Sbjct:   439 MQALFYDEMKGYMSVGQHIRDSACYMCWAFARAYNPDDVKPFVHKISSGLLTVAVFDREV 498

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGR G N P+GI+I T  D++SVG RQ++YL+IS YIAQFE Y  P 
Sbjct:   499 NCRRAASAAFQESVGRLG-NFPFGIEISTTTDFYSVGIRQNSYLNISDYIAQFEVYREPL 557

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I HL+  KV HWD  IR+LTAK L +L   + EY    V
Sbjct:   558 INHLVQHKVSHWDSAIRELTAKALHKLSLWEPEYMAAVV 596

GO:0005575 "cellular_component" evidence=ND

GO:0005096 "GTPase activator activity" evidence=ISS

GO:0048487 "beta-tubulin binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0043547 "positive regulation of GTPase activity" evidence=ISS

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISS

MGI|MGI:1919686 Tbcd "tubulin-specific chaperone d" [Mus musculus (taxid:10090)]

 Score = 479 (173.7 bits), Expect = 2.1e-44, P = 2.1e-44
 Identities = 91/159 (57%), Positives = 114/159 (71%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             +KAL YDE +G CSVG+ +RDAACYVCWAFARAY+   L P V  I+  L++   +D+ +
Sbjct:   447 LKALTYDEKRGACSVGANVRDAACYVCWAFARAYEPQELTPFVTAISSALVIAAVFDRNV 506

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGRQG   P+GIDILT ADYF+VGN  + +L ISV+IA F+ YT+P 
Sbjct:   507 NCRRAASAAFQENVGRQG-TFPHGIDILTTADYFAVGNISNCFLIISVFIAGFQEYTKPM 565

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I HL++ K+ HWD  IR+L+AK L  L P   EY    V
Sbjct:   566 IDHLVSMKINHWDGAIRELSAKALHNLTPQVPEYIAMHV 604

GO:0005096 "GTPase activator activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0006457 "protein folding" evidence=ISO

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=ISO

GO:0043547 "positive regulation of GTPase activity" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=ISO

UNIPROTKB|Q9BTW9 TBCD "Tubulin-specific chaperone D" [Homo sapiens (taxid:9606)]

 Score = 477 (173.0 bits), Expect = 3.4e-44, P = 3.4e-44
 Identities = 91/159 (57%), Positives = 115/159 (72%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             +KAL YDE +G CSVG+ +RDAACYVCWAFARAY+   L+P V  I+  L++   +D++I
Sbjct:   445 LKALTYDEKRGACSVGTNVRDAACYVCWAFARAYEPQELKPFVTAISSALVIAAVFDRDI 504

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGRQG   P+GIDILT ADYF+VGNR + +L ISV+IA F  YT+P 
Sbjct:   505 NCRRAASAAFQENVGRQG-TFPHGIDILTTADYFAVGNRSNCFLVISVFIAGFPEYTQPM 563

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I HL+  K+ HWD  IR+L A+ L  L     E+  T+V
Sbjct:   564 IDHLVTMKISHWDGVIRELAARALHNLAQQAPEFSATQV 602

GO:0005737 "cytoplasm" evidence=IEA

GO:0006457 "protein folding" evidence=IDA;TAS

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IDA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005096 "GTPase activator activity" evidence=IDA;IMP

GO:0010812 "negative regulation of cell-substrate adhesion" evidence=ISS

GO:0034333 "adherens junction assembly" evidence=ISS

GO:0070830 "tight junction assembly" evidence=ISS

GO:0005912 "adherens junction" evidence=ISS

GO:0005923 "tight junction" evidence=ISS

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0051087 "chaperone binding" evidence=TAS

GO:0005874 "microtubule" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0043547 "positive regulation of GTPase activity" evidence=IMP;IDA

UNIPROTKB|Q28205 TBCD "Tubulin-specific chaperone D" [Bos taurus (taxid:9913)]

 Score = 476 (172.6 bits), Expect = 4.4e-44, P = 4.4e-44
 Identities = 91/159 (57%), Positives = 117/159 (73%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             ++AL Y+E +G CSVGS +RDAACYVCWAFARAY+   L+P V  I+  L++ T +D+++
Sbjct:   452 LRALTYEEKRGACSVGSNVRDAACYVCWAFARAYEPQELKPFVAAISSALVIATVFDRDV 511

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGRQG   P+GIDILT ADYF+VGNR + +L IS++IA F  YT+P 
Sbjct:   512 NCRRAASAAFQENVGRQG-TFPHGIDILTTADYFAVGNRSNCFLVISMFIAGFPEYTQPM 570

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I+HL+  KV HWD  IR+L+AK L  L     E+   EV
Sbjct:   571 IEHLVTMKVGHWDGTIRELSAKALRNLAQRAPEHTAREV 609

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005923 "tight junction" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0034333 "adherens junction assembly" evidence=IDA

GO:0070830 "tight junction assembly" evidence=IDA

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0005096 "GTPase activator activity" evidence=IDA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IDA

GO:0006457 "protein folding" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0010812 "negative regulation of cell-substrate adhesion" evidence=IDA

UNIPROTKB|F1RZZ1 TBCD "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 470 (170.5 bits), Expect = 1.9e-43, P = 1.9e-43
 Identities = 88/159 (55%), Positives = 116/159 (72%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             +KAL Y+E +G CSVG+ +RDAACYVCWAFARAY+   L P V  I+  L+V   +D+++
Sbjct:   451 LKALTYEEKRGACSVGANVRDAACYVCWAFARAYEPQELRPFVAAISSALVVTAVFDRDV 510

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAASAAFQE VGRQG  P +GID+LT ADYF+VGNR + +L +S++IA F  YT+P 
Sbjct:   511 NCRRAASAAFQENVGRQGAFP-HGIDVLTAADYFAVGNRANCFLVVSMFIAGFPEYTQPM 569

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             I+HL+A K+ HWD  IR+L+AK L  L     E+   +V
Sbjct:   570 IEHLVAMKINHWDGVIRELSAKALRNLAQRAPEHSARDV 608

GO:0048487 "beta-tubulin binding" evidence=IEA

GO:0031115 "negative regulation of microtubule polymerization" evidence=IEA

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

TAIR|locus:2101856 TTN1 "TITAN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 4.0e-39, P = 4.0e-39
 Identities = 82/159 (51%), Positives = 115/159 (72%)

Query:     1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEI 60
             +KAL YD  +G  SVGS++RDAA YVCWAF RAY H  ++ ++ Q+A  LL+V  +D+E+
Sbjct:   482 VKALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYSHKDMKNVLDQLAPDLLIVGSFDREV 541

Query:    61 NCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF 120
             NCRRAA+AAFQE VGRQG N P+GIDI++ ADYFS+ +R ++YL ++V IAQ+E Y  PF
Sbjct:   542 NCRRAAAAAFQENVGRQG-NYPHGIDIVSIADYFSLSSRVNSYLQVAVSIAQYEGYLYPF 600

Query:   121 IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV 159
             +  L+  K+ HWD  +R+L A+ L  LV  + ++F   V
Sbjct:   601 VDELLYNKICHWDKSLRELAAEALAPLVKYEPKHFANYV 639

GO:0005737 "cytoplasm" evidence=ISM

GO:0007017 "microtubule-based process" evidence=RCA;IMP

GO:0000910 "cytokinesis" evidence=IGI;RCA

GO:0006457 "protein folding" evidence=ISS

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0015631 "tubulin binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

WB|WBGene00008887 F16D3.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 316 (116.3 bits), Expect = 5.8e-27, P = 5.8e-27
 Identities = 59/145 (40%), Positives = 94/145 (64%)

Query:     3 ALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINC 62
             +LV+++  G    G+ +RDAACY  WA +R Y+   + P +Q++A  LL    +D+++N 
Sbjct:   532 SLVFEDVMGRHQNGNQVRDAACYAVWALSRTYEPSMMAPYLQRLASALLCGALFDRQVNL 591

Query:    63 RRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQ 122
             RRAASAA QE+VGRQ  N  +GI ++   DYF+V NRQ  Y  + V +A++  Y+   ++
Sbjct:   592 RRAASAALQEMVGRQK-NVSHGIPLIQSVDYFAVTNRQKCYEHLCVPVAEYSTYSAIILR 650

Query:   123 HLMARKVEHWDPEIRKLTAKTLPRL 147
             HL+ +KV HWD +IR+  A +L ++
Sbjct:   651 HLITKKVVHWDEKIREQAAISLEKI 675

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0046785 "microtubule polymerization" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BYA0	TBCD_MOUSE	No assigned EC number	0.5723	0.9813	0.1321	yes	N/A
Q5ZI87	TBCD_CHICK	No assigned EC number	0.5935	0.9565	0.1511	yes	N/A
Q28205	TBCD_BOVIN	No assigned EC number	0.5723	0.9813	0.1317	yes	N/A
Q9BTW9	TBCD_HUMAN	No assigned EC number	0.5723	0.9813	0.1325	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	161
COG5234	993	COG5234, CIN1, Beta-tubulin folding cofactor D [Po	6e-16

>gnl|CDD|227559 COG5234, CIN1, Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

 Score = 73.4 bits (180), Expect = 6e-16
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 2   KALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEIN 61
           K L Y+   G    G  IRD++C+  W+F R Y    +E L   +   LL    +D E+N
Sbjct: 343 KGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELN 402

Query: 62  CRRAASAAFQELVGRQGGNPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFE--AYTRP 119
            RRAA+AA  E++GR   +   G+ +++  +Y SV    +   D+   +A F        
Sbjct: 403 VRRAATAALFEVIGRH-ASIADGLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRSCED 461

Query: 120 FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDRE 153
             Q ++   ++HWD ++++L+A +L +L+   +E
Sbjct: 462 VFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKE 495

Length = 993

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG1943|consensus	1133		100.0
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	99.94
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	85.29
KOG2171|consensus	1075		84.26
PRK09687	280	putative lyase; Provisional	84.09
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	82.73
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	80.82

>KOG1943|consensus

Probab=100.00  E-value=2.4e-56  Score=426.66  Aligned_cols=158  Identities=53%  Similarity=0.925  Sum_probs=155.0

Q ss_pred             CcceeeeeccCCCCCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC
Q psy14303          1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN   80 (161)
Q Consensus         1 ~~~L~~d~~~g~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~   80 (161)
                      +|+|+||+++|.+|+|+||||||||+||||+|+|+|++++|+++.|+.+||++++|||||||||||+|||||+|||| |+
T Consensus       426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~-~n  504 (1133)
T KOG1943|consen  426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQ-GN  504 (1133)
T ss_pred             HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccC-CC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CCCccccceeechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303         81 PPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV  159 (161)
Q Consensus        81 ~~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v  159 (161)
                      +||||+|++++|||+|++|.|||+.++..+|+|+.|++++++||+..|+.|||..+|+++|.||++|+...|+|+++.+
T Consensus       505 ~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~  583 (1133)
T KOG1943|consen  505 FPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYV  583 (1133)
T ss_pred             CCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998643

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=99.94  E-value=4.7e-28  Score=226.64  Aligned_cols=147  Identities=30%  Similarity=0.571  Sum_probs=128.9

Q ss_pred             CcceeeeeccCCCCCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHH-HhhcCCchhhhhhHHHHHHHhccCCC
Q psy14303          1 MKALVYDEPKGFCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVV-TCYDKEINCRRAASAAFQELVGRQGG   79 (161)
Q Consensus         1 ~~~L~~d~~~g~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~-alFDrevniRRaAsAAlQE~vGR~~g   79 (161)
                      .|++.|+.+.|+.+.|.+|||||||++||+.|+|+.+..+. ++....+|++. ++||||+||||||.||+||++||+ .
T Consensus       342 ~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~-lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~-~  419 (993)
T COG5234         342 EKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEG-LQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRH-A  419 (993)
T ss_pred             ccccceeehheeeeccceeecccceeeeeeeeccccccchh-HHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccC-C
Confidence            37899999999999999999999999999999998765555 77655555555 999999999999999999999998 9


Q ss_pred             CCCCccccceeechhhhhhhhhHHHHHHHHHhcCccchHH--HHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303         80 NPPYGIDILTRADYFSVGNRQSAYLDISVYIAQFEAYTRP--FIQHLMARKVEHWDPEIRKLTAKTLPRLVP  149 (161)
Q Consensus        80 ~~~~gi~il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~--li~~L~~~~l~hwD~~iR~Laa~al~~L~~  149 (161)
                      ..|.|.+++.+.+|.+|...++|+-.+...++.++..+.-  +++-.+-.++.|||+++..+++.+|.+|.+
T Consensus       420 s~a~g~~lIslIN~~sv~r~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK  491 (993)
T COG5234         420 SIADGLSLISLINYVSVTRISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIK  491 (993)
T ss_pred             CcccchhhhhhccceecchhhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhc
Confidence            9999999999999999999999999999999988865533  444334458999999999999999999953

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=85.29  E-value=1  Score=25.90  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhhccc
Q psy14303        128 KVEHWDPEIRKLTAKTLPRLVPL  150 (161)
Q Consensus       128 ~l~hwD~~iR~Laa~al~~L~~~  150 (161)
                      .+.+-|+++|+-|+++|+.+++.
T Consensus         8 ~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    8 LLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhh
Confidence            35789999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2171|consensus

Probab=84.26  E-value=3.2  Score=42.29  Aligned_cols=143  Identities=17%  Similarity=0.171  Sum_probs=97.5

Q ss_pred             CCCCCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHH----------HHhccCCCCC
Q psy14303         12 FCSVGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQ----------ELVGRQGGNP   81 (161)
Q Consensus        12 ~~s~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQ----------E~vGR~~g~~   81 (161)
                      .+|.-.+.|-+|=+|+|++...+.. .++||+.. +..|+..++=|++..||=+|--|+=          +.+-++...+
T Consensus       127 ~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~-l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~ll  204 (1075)
T KOG2171|consen  127 TKSPNPSLRESALLILSSLPETFGN-TLQPHLDD-LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLL  204 (1075)
T ss_pred             hcCCCcchhHHHHHHHHhhhhhhcc-ccchhHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence            4566678999999999999999975 57777754 4677888899999999977665542          1222332245


Q ss_pred             CCccccce-eechhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCC-----CCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303         82 PYGIDILT-RADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKV-----EHWDPEIRKLTAKTLPRLVPLDREYF  155 (161)
Q Consensus        82 ~~gi~il~-~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l-----~hwD~~iR~Laa~al~~L~~~~p~~~  155 (161)
                      |..+.+++ ..+.-...+-+.++..+...+...+.+..+.+.-++...+     ..-|..+|.+|-+-|--++...|.-+
T Consensus       205 P~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~  284 (1075)
T KOG2171|consen  205 PSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMC  284 (1075)
T ss_pred             HHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHh
Confidence            65554433 3333333334555555555566677777777777776443     78899999999998888777666544


Q ss_pred             H
Q psy14303        156 L  156 (161)
Q Consensus       156 ~  156 (161)
                      +
T Consensus       285 k  285 (1075)
T KOG2171|consen  285 K  285 (1075)
T ss_pred             h
Confidence            3

>PRK09687 putative lyase; Provisional

Probab=84.09  E-value=2  Score=36.72  Aligned_cols=52  Identities=17%  Similarity=0.030  Sum_probs=26.2

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHH
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQEL   73 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~   73 (161)
                      ...||-++..++.-+.....+      ....+..|....+-|++-.+|++|..||-++
T Consensus        67 d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~  118 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHR  118 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            345666666555555443211      1122333333345666666776666666443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=82.73  E-value=1.8  Score=27.31  Aligned_cols=50  Identities=28%  Similarity=0.419  Sum_probs=35.1

Q ss_pred             hhchhhHHHHHHhhcc--CccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHH
Q psy14303         19 IRDAACYVCWAFARAY--DHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQE   72 (161)
Q Consensus        19 VRDAacf~~WslaR~y--~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE   72 (161)
                      ||.+|   +|+|++--  .++.+++++..+...|+ ..+=|.+-.+|.+|.-||-.
T Consensus         3 vR~~A---~~aLg~l~~~~~~~~~~~~~~~~~~L~-~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    3 VRRAA---AWALGRLAEGCPELLQPYLPELLPALI-PLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHH---HHHHHCTTTTTHHHHHHHHHHHHHHHH-HHTTSSSHHHHHHHHHHHHC
T ss_pred             HHHHH---HHHHhhHhcccHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHhc
Confidence            66666   56777532  23467788888888777 44466777999999988854

...

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=80.82  E-value=8.4  Score=30.65  Aligned_cols=135  Identities=17%  Similarity=0.175  Sum_probs=79.0

Q ss_pred             hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc--c-cceeechh
Q psy14303         18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI--D-ILTRADYF   94 (161)
Q Consensus        18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi--~-il~~~Dy~   94 (161)
                      .|-=.||-++=.+++..... ++|+++.++..|+.. +=|..-.||.+|..++..++-.. + ++..+  . +.....--
T Consensus        68 ~v~~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~-~~~~~~~i~~~a~~~L~~i~~~~-~-~~~~~~~~~l~~~~~~K  143 (228)
T PF12348_consen   68 KVSKTACQLLSDLARQLGSH-FEPYADILLPPLLKK-LGDSKKFIREAANNALDAIIESC-S-YSPKILLEILSQGLKSK  143 (228)
T ss_dssp             -HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHG-GG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S
T ss_pred             HHHHHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHHHHHC-C-cHHHHHHHHHHHHHhCC
Confidence            34446787777888887664 889988888766554 44566689999999999999877 3 11111  1 11111222


Q ss_pred             hhhhhhhHHHHHHHHHhcCc---c---chH--HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303         95 SVGNRQSAYLDISVYIAQFE---A---YTR--PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL  156 (161)
Q Consensus        95 sv~~r~~a~l~~~~~va~~~---~---Y~~--~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~  156 (161)
                      +...|..+..-+...+..++   .   ...  .-+.-.+...+.+-|+++|+.|-+++..+....|+-..
T Consensus       144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~  213 (228)
T PF12348_consen  144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE  213 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred             CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence            34445555444444444444   1   111  12333445577999999999999999999888777643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.16
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	94.62
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	92.78
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	92.73
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	92.55
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	92.13
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	91.76
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	90.97
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	90.89
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	90.62
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	90.42
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	90.32
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	90.06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	89.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	87.97
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	87.79
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	87.77
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	87.72
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	87.29
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	84.98
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	84.65
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	84.42
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	83.27
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	82.81
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	82.08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	81.59
1qgr_A	876	Protein (importin beta subunit); transport recepto	80.5
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	80.49

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.16  E-value=0.021  Score=44.36  Aligned_cols=131  Identities=14%  Similarity=0.112  Sum_probs=91.0

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccce----ee
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILT----RA   91 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~----~~   91 (161)
                      -.+||.+||-.+=.|++...+ .+.+++..++..|+. .+=|..-.+|.+|..|+.+++.-. + ++   +++.    ..
T Consensus        70 ~~~V~~~a~~~l~~la~~l~~-~~~~~~~~ilp~ll~-~l~d~~~~vr~~a~~aL~~~~~~~-~-~~---~ll~~l~~~l  142 (242)
T 2qk2_A           70 NVVLVAMAGKCLALLAKGLAK-RFSNYASACVPSLLE-KFKEKKPNVVTALREAIDAIYAST-S-LE---AQQESIVESL  142 (242)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHH-GGGCCCHHHHHHHHHHHHHHHTTS-C-HH---HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHcC-C-HH---HHHHHHHHHH
Confidence            356899999999999998765 578888888777765 467999999999999999998755 2 11   1111    11


Q ss_pred             chhhhhhhhhHHHHHHHHHhcC------ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303         92 DYFSVGNRQSAYLDISVYIAQF------EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY  154 (161)
Q Consensus        92 Dy~sv~~r~~a~l~~~~~va~~------~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~  154 (161)
                      +--.-..|..+..-++..+..+      ..|.+.++..|+. .+.+-+.++|.-|.++++.|+..-++.
T Consensus       143 ~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~-~l~D~~~~VR~~A~~~l~~l~~~vg~~  210 (242)
T 2qk2_A          143 SNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVK-TLNEPDPTVRDSSAEALGTLIKLMGDK  210 (242)
T ss_dssp             TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred             cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence            1002234555554444444443      2356677777765 457888999999999999998765554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=94.62  E-value=0.33  Score=43.02  Aligned_cols=138  Identities=14%  Similarity=0.099  Sum_probs=87.2

Q ss_pred             CCCchhhchhhHHHHHHhhcc--CccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccc-ee
Q psy14303         14 SVGSYIRDAACYVCWAFARAY--DHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDIL-TR   90 (161)
Q Consensus        14 s~G~~VRDAacf~~WslaR~y--~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il-~~   90 (161)
                      +.+..|+=+|+-.+..+....  +++.++..+..+...|+.  +-+++-|+|..|--++.+++-++|..+..-+..+ ..
T Consensus       250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~--L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~  327 (591)
T 2vgl_B          250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT--LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVK  327 (591)
T ss_dssp             SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH--HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCC
T ss_pred             CCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheec
Confidence            456778888877777766543  444555555566666653  3468999999999999999998866654333211 11


Q ss_pred             echhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303         91 ADYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT  157 (161)
Q Consensus        91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~  157 (161)
                      .| -....|..+. ++...+++- +-.+.+++.|... +.+-|.++|+-++.+|++++...|.....
T Consensus       328 ~~-d~~~Ir~~al-~~L~~l~~~-~nv~~iv~~L~~~-l~~~d~~~r~~~v~aI~~la~~~~~~~~~  390 (591)
T 2vgl_B          328 YN-DPIYVKLEKL-DIMIRLASQ-ANIAQVLAELKEY-ATEVDVDFVRKAVRAIGRCAIKVEQSAER  390 (591)
T ss_dssp             TT-SCHHHHHHHH-HHHHHTCCS-STHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cC-ChHHHHHHHH-HHHHHHCCh-hhHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHhChhHHHH
Confidence            01 0133344443 333333332 2345677777652 35669999999999999999988865443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=92.78  E-value=0.26  Score=43.86  Aligned_cols=136  Identities=10%  Similarity=0.048  Sum_probs=82.2

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC---CCccccce-eec
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP---PYGIDILT-RAD   92 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~---~~gi~il~-~~D   92 (161)
                      -.+|++|++.+=+++....++.+.+++..+...| +..+-|++-.+|.++.-++-.+..-.+..+   ++--.++. +..
T Consensus       383 ~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~  461 (861)
T 2bpt_A          383 WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI-LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLI  461 (861)
T ss_dssp             HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH-HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence            5699999999988887765556778888776644 456789999999988766655443321111   11001211 000


Q ss_pred             hh--hhhhhhhHHHHHHHHHhc--------CccchHHHHHHHhhCCCCCC--CHHHHHHHHHHHhhhcccChHH
Q psy14303         93 YF--SVGNRQSAYLDISVYIAQ--------FEAYTRPFIQHLMARKVEHW--DPEIRKLTAKTLPRLVPLDREY  154 (161)
Q Consensus        93 y~--sv~~r~~a~l~~~~~va~--------~~~Y~~~li~~L~~~~l~hw--D~~iR~Laa~al~~L~~~~p~~  154 (161)
                      ..  ....+..+...+...+..        ...|.+.+++.|+.. +.+.  |..+|..+.++|+.+....|+.
T Consensus       462 ~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~-l~~~d~~~~vr~~a~~al~~l~~~~~~~  534 (861)
T 2bpt_A          462 GLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA-ANRIDNEFNARASAFSALTTMVEYATDT  534 (861)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH-HTCSCCGGGHHHHHHHHHHHHHHHCCGG
T ss_pred             HhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH-HhCcCcchHHHHHHHHHHHHHHHHcchh
Confidence            00  122333333333333322        236788888888762 2223  3689999999999998877654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=92.73  E-value=0.15  Score=38.76  Aligned_cols=131  Identities=13%  Similarity=0.056  Sum_probs=74.7

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-cccee
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILTR   90 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~~   90 (161)
                      ..||..|+..++.++...... ....++.=+...++..+-|.+..+|+.|..++..+....+..    + ..++ .++++
T Consensus       110 ~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  188 (252)
T 4db8_A          110 EQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  188 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            578999999999998764321 123334334455666778889999999999998776432110    0 1112 22222


Q ss_pred             echhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303         91 ADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVP  149 (161)
Q Consensus        91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~  149 (161)
                      .+--....+.++...++......++....     .++.|+. -+.+-|+.+|+-|+.+|.+|+.
T Consensus       189 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             GGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHT-TTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH-HhCCCCHHHHHHHHHHHHHHhc
Confidence            22212333444443333333222232222     3344443 3467788999999999998874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=92.55  E-value=0.55  Score=34.59  Aligned_cols=139  Identities=10%  Similarity=-0.041  Sum_probs=80.2

Q ss_pred             CCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-ccc
Q psy14303         15 VGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DIL   88 (161)
Q Consensus        15 ~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il   88 (161)
                      --..+|-.||..+..+++... +....+++.=+...++..+-+.+-.+|..|..++..+.-..+..    + ..++ .++
T Consensus        24 ~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~  102 (210)
T 4db6_A           24 PDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV  102 (210)
T ss_dssp             SCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence            346788899988888886532 22233444334555667778889999999999999876321010    0 1122 233


Q ss_pred             eeechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303         89 TRADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF  155 (161)
Q Consensus        89 ~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~  155 (161)
                      +..+--....+.++...+.......++...     ..+..|++ -+.+-|..+|+-++.+|.+|+...|+..
T Consensus       103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~~~~~~~  173 (210)
T 4db6_A          103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQK  173 (210)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence            322222334444444333332222222221     23444444 2345699999999999999998767654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=92.13  E-value=0.75  Score=43.62  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=45.0

Q ss_pred             CchhhchhhHHHHHHhhccCcc-----ccHHHHHHHHHHHHHHHhhc-CCchhhhhhHHHHHHHhccC
Q psy14303         16 GSYIRDAACYVCWAFARAYDHH-----TLEPLVQQIAQGLLVVTCYD-KEINCRRAASAAFQELVGRQ   77 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~-----~l~~~~~~l~~~Ll~~alFD-revniRRaAsAAlQE~vGR~   77 (161)
                      -..||++||..+=.++....+.     ...++...+...|+. .+-| .+..+|.+|..+|.|++++.
T Consensus        99 ~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~-~l~~~~~~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           99 KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS-AIAKQEDVSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHH-HHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHh
Confidence            3578999999999999887654     234456666665554 4443 77899999999999999877

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=91.76  E-value=0.19  Score=37.58  Aligned_cols=137  Identities=12%  Similarity=0.074  Sum_probs=77.5

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-ccce
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILT   89 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~   89 (161)
                      ...||..||..++.++.... +..+..++.=+...++..+-|.+..+|+.|..++..+.-..++.    . ..++ .+++
T Consensus        99 ~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  177 (252)
T 4hxt_A           99 DSEVQKEAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK  177 (252)
T ss_dssp             SHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHH
Confidence            36789999999999987432 22222333334445556777889999999999998776433111    0 1111 1222


Q ss_pred             eechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303         90 RADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY  154 (161)
Q Consensus        90 ~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~  154 (161)
                      ..+--.-..+..+...+.......++..+     ..++.|++ -+.+-|..+|+.|..+|.+|+...|.+
T Consensus       178 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~  246 (252)
T 4hxt_A          178 LLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQK-LLTSTDSEVQKEAQRALENIKSGGWLE  246 (252)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred             HHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence            22111123333333333322222222222     23455554 235779999999999999999776654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=90.97  E-value=0.98  Score=36.74  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=75.2

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcC--CchhhhhhHHHHHHHhccCCCCCCCccccceeech
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDK--EINCRRAASAAFQELVGRQGGNPPYGIDILTRADY   93 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDr--evniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy   93 (161)
                      ...+|.++..++-.+++.+.++.+.+++..++..++ ..+-|.  +..+|++|..++..++.-. +   ...        
T Consensus       143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~-~~l~~~~~~~~vr~~a~~~l~~~~~~~-~---~~~--------  209 (462)
T 1ibr_B          143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLNSLEFT-K---ANF--------  209 (462)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHH-HHHSTTCCCHHHHHHHHHHHHHHTTTT-H---HHH--------
T ss_pred             CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHH-H---Hhh--------
Confidence            347899999999999998877667777777665544 455566  5889999999998776321 0   000        


Q ss_pred             hhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303         94 FSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV  159 (161)
Q Consensus        94 ~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v  159 (161)
                       .    ...             +.+.+++.|.. .+.+-|..+|+-+.++|..+....|+.+...+
T Consensus       210 -~----~~~-------------~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~  256 (462)
T 1ibr_B          210 -D----KES-------------ERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMSLYYQYMETYM  256 (462)
T ss_dssp             -T----SHH-------------HHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT
T ss_pred             -h----hhH-------------HHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0    000             11113333332 24677899999999999999988887765544

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=90.89  E-value=0.96  Score=38.66  Aligned_cols=139  Identities=13%  Similarity=0.030  Sum_probs=78.5

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----CCCcc--ccce
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----PPYGI--DILT   89 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~~~gi--~il~   89 (161)
                      ...||-.+|..++.+++...+..-......++. .++..+-|.+-.+|..|..++..+.-..+..    +..|+  .++.
T Consensus       228 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~-~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~  306 (530)
T 1wa5_B          228 KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE  306 (530)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH-HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHH-HHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence            356888999999999987644322233333333 3344567888999999999998876432100    00111  2222


Q ss_pred             eechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303         90 RADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL  156 (161)
Q Consensus        90 ~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~  156 (161)
                      ...--....+..+...++......++...     .++..|+. -+.+-|..+|+-|+.+|++|+...|+.+.
T Consensus       307 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~vr~~A~~aL~~l~~~~~~~~~  377 (530)
T 1wa5_B          307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL-LLSSPKENIKKEACWTISNITAGNTEQIQ  377 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            22211223344443333322222222111     23444443 23566899999999999999988777553

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=90.62  E-value=0.82  Score=40.60  Aligned_cols=134  Identities=12%  Similarity=0.087  Sum_probs=80.7

Q ss_pred             chhhchhhHHHHHHhhccC---ccccHHHHHHHHHHHHHHHh-hcCCchhhhhhHHHHHHHhccCCCC-CCCcc-ccce-
Q psy14303         17 SYIRDAACYVCWAFARAYD---HHTLEPLVQQIAQGLLVVTC-YDKEINCRRAASAAFQELVGRQGGN-PPYGI-DILT-   89 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~---~~~l~~~~~~l~~~Ll~~al-FDrevniRRaAsAAlQE~vGR~~g~-~~~gi-~il~-   89 (161)
                      ..||.+||..+-.++....   ++.+.|++..+...|+-..- .|.+-++|.++..|+..++... |. +..=+ .++. 
T Consensus       467 ~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~-~~~~~~~~~~l~~~  545 (861)
T 2bpt_A          467 PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA-TDTVAETSASISTF  545 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC-CGGGHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc-chhhHHHHHHHHHH
Confidence            5689999988888888764   46788999988888776544 4777899999999999998877 42 10000 0000 


Q ss_pred             eechh------------------hhhhhhhHHHHHHHHHh----cCccchHHHHHHHhh-CCCCCCCHHHHHHHHHHHhh
Q psy14303         90 RADYF------------------SVGNRQSAYLDISVYIA----QFEAYTRPFIQHLMA-RKVEHWDPEIRKLTAKTLPR  146 (161)
Q Consensus        90 ~~Dy~------------------sv~~r~~a~l~~~~~va----~~~~Y~~~li~~L~~-~~l~hwD~~iR~Laa~al~~  146 (161)
                      +.+..                  ....+..+...+...+.    .+..|.+.++..|+. .+-.++| .+|+-+..+++.
T Consensus       546 l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-~v~~~~~~~l~~  624 (861)
T 2bpt_A          546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSA-FIEDDVFYAISA  624 (861)
T ss_dssp             HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGG-GTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCC-cHHHHHHHHHHH
Confidence            00100                  00112223222222222    244577777777665 1223344 789888888888


Q ss_pred             hcccCh
Q psy14303        147 LVPLDR  152 (161)
Q Consensus       147 L~~~~p  152 (161)
                      ++...+
T Consensus       625 l~~~~~  630 (861)
T 2bpt_A          625 LAASLG  630 (861)
T ss_dssp             HHHHHG
T ss_pred             HHHHHh
Confidence            875443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=90.42  E-value=1.1  Score=33.84  Aligned_cols=138  Identities=11%  Similarity=-0.005  Sum_probs=77.2

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-cccee
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILTR   90 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~~   90 (161)
                      ..||-.|+..++.++...+ +.-...++.=+...++..+-+.+..+|+.|..++..+....+..    . ..++ .+++.
T Consensus        68 ~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l  146 (252)
T 4db8_A           68 EQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  146 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence            6789999999998887532 12223333334556666777888999999999997664322100    0 1122 22222


Q ss_pred             echhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303         91 ADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL  156 (161)
Q Consensus        91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~  156 (161)
                      .+--....+..+...+.......++....     .+..|+. -+.+-|..+|+-++.+|++|+..+|+...
T Consensus       147 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  216 (252)
T 4db8_A          147 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIASGGNEQKQ  216 (252)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-GGGCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHH-HHCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            22112233444433333222212222211     2334443 23456999999999999999988876543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=90.32  E-value=1  Score=35.82  Aligned_cols=132  Identities=13%  Similarity=0.084  Sum_probs=88.2

Q ss_pred             hhhchhhHHHHHHhhccC-ccccH-HHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCc-c-ccce-eec
Q psy14303         18 YIRDAACYVCWAFARAYD-HHTLE-PLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYG-I-DILT-RAD   92 (161)
Q Consensus        18 ~VRDAacf~~WslaR~y~-~~~l~-~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~g-i-~il~-~~D   92 (161)
                      .||=+||..+=.++.... + .++ +|...++..|+ ..+=|..-.+|.++.+|+..++.-.+-..+++ + +++. +..
T Consensus        76 ~v~~~A~~al~~la~~l~~~-~f~~~y~~~llp~ll-~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~  153 (249)
T 2qk1_A           76 QAVALAAQSVELICDKLKTP-GFSKDYVSLVFTPLL-DRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE  153 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT-TSCHHHHHHHHHHHH-HGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccc-cccHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHH
Confidence            478889999999998887 5 577 89988877655 44568889999999999999988773233443 2 2222 111


Q ss_pred             hh---hhhhhhhHHHHHHHHHhcCc-------cch-HHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccCh
Q psy14303         93 YF---SVGNRQSAYLDISVYIAQFE-------AYT-RPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDR  152 (161)
Q Consensus        93 y~---sv~~r~~a~l~~~~~va~~~-------~Y~-~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p  152 (161)
                      ..   .-..|..+..-++..+...+       .|. +.++..|.. .+.+-|.++|.-|.++|+.++..-+
T Consensus       154 ~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~-~l~D~~~~VR~aA~~~l~~i~~~vG  223 (249)
T 2qk1_A          154 HMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ-IVNDTQPAIRTIGFESFAILIKIFG  223 (249)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhC
Confidence            11   12344555545555443333       344 667766655 3477799999999999999875433

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=90.06  E-value=0.24  Score=36.64  Aligned_cols=132  Identities=13%  Similarity=0.048  Sum_probs=75.2

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-ccce
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILT   89 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~   89 (161)
                      -..||..|+..++.++...+ +.....++.=....++..+-+.+..+|+.|..|+..+....+..    + ..++ .+++
T Consensus        67 ~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~  145 (210)
T 4db6_A           67 NEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ  145 (210)
T ss_dssp             CHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH
Confidence            35788899888888886532 11222333334455666677889999999999998876422111    0 1122 2222


Q ss_pred             eechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcc
Q psy14303         90 RADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVP  149 (161)
Q Consensus        90 ~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~  149 (161)
                      +.+--....+.++...+.......++...     ..++.|++ -+.+-|..+|+-|+.+|.+|+.
T Consensus       146 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          146 LLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ-LQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHhc
Confidence            22211233444444433333322233222     23445554 3467899999999999999975

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=89.00  E-value=1.4  Score=35.86  Aligned_cols=136  Identities=12%  Similarity=0.015  Sum_probs=75.8

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---------CCCCCccc
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---------GNPPYGID   86 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---------g~~~~gi~   86 (161)
                      ...||-.|+..++.+++...|..-...+..+... ++..+-|.+..+|+.|..++-.+....+         |.+|   .
T Consensus       163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~-L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~---~  238 (450)
T 2jdq_A          163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV-LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR---R  238 (450)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHH-HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHH---H
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHH---H
Confidence            4679999999999999875332211222222222 2233457788899999999887654220         2222   2


Q ss_pred             cceeechhhhhhhhhHHHHHHHHHhcCccchH-----HHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303         87 ILTRADYFSVGNRQSAYLDISVYIAQFEAYTR-----PFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL  156 (161)
Q Consensus        87 il~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~-----~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~  156 (161)
                      +++...--....+..+...++......++..+     .++..|+. -+.+.|..+|+-++.+|++|+...++.+.
T Consensus       239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~vr~~a~~~L~~l~~~~~~~~~  312 (450)
T 2jdq_A          239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH-LLSSPKESIKKEACWTISNITAGNRAQIQ  312 (450)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH-HTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            22222111122333333333322222221111     24555554 24567999999999999999987776554

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=87.97  E-value=1.6  Score=38.76  Aligned_cols=135  Identities=16%  Similarity=0.117  Sum_probs=80.2

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC---CCccccce---
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP---PYGIDILT---   89 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~---~~gi~il~---   89 (161)
                      -..+|++|++.+=+++....|+.+.+++..+...| +..+-|++..+|.+|..++..+..-.+..+   |+--.++.   
T Consensus       379 ~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l-~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~  457 (876)
T 1qgr_A          379 DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTL-IELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  457 (876)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHH
Confidence            35789999887767776655455667777766544 456789999999999999987776542211   11101111   


Q ss_pred             -eechhhhhhhhhHHHHHHHHHh------------------cCccchHHHHHHHhhCC--CCCCCHHHHHHHHHHHhhhc
Q psy14303         90 -RADYFSVGNRQSAYLDISVYIA------------------QFEAYTRPFIQHLMARK--VEHWDPEIRKLTAKTLPRLV  148 (161)
Q Consensus        90 -~~Dy~sv~~r~~a~l~~~~~va------------------~~~~Y~~~li~~L~~~~--l~hwD~~iR~Laa~al~~L~  148 (161)
                       ..+- .-..+.++..-+...+.                  .+..|.+.++..|+..-  ...-+..+|.-+.++|+.|+
T Consensus       458 ~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~  536 (876)
T 1qgr_A          458 EGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIV  536 (876)
T ss_dssp             HHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHH
T ss_pred             HHHcC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHH
Confidence             1111 11223333333332221                  14568889999988621  11123578888888888887


Q ss_pred             ccCh
Q psy14303        149 PLDR  152 (161)
Q Consensus       149 ~~~p  152 (161)
                      ...+
T Consensus       537 ~~~~  540 (876)
T 1qgr_A          537 KNSA  540 (876)
T ss_dssp             HTCC
T ss_pred             HHCc
Confidence            6544

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=87.79  E-value=1.2  Score=40.44  Aligned_cols=139  Identities=17%  Similarity=0.097  Sum_probs=84.2

Q ss_pred             hchhhHHHHHHhhccCccccHHHH-HHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCcc-ccc----eeech
Q psy14303         20 RDAACYVCWAFARAYDHHTLEPLV-QQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGI-DIL----TRADY   93 (161)
Q Consensus        20 RDAacf~~WslaR~y~~~~l~~~~-~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi-~il----~~~Dy   93 (161)
                      |-+++=.+=++++...+ .+++++ ..-+..++...+-|+.-.+|.+|.+++.++..-.|+.+-.-+ +++    +..+-
T Consensus       603 ~~~~l~~l~~l~~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~  681 (852)
T 4fdd_A          603 MIVALDLLSGLAEGLGG-NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNP  681 (852)
T ss_dssp             HHHHHHHHHHHHHHHGG-GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHHHHHHhH-hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc
Confidence            33333333346776653 566776 223445666667888899999999999998855533321111 111    11111


Q ss_pred             hhhhhhhhHHHHH---HHHHh-cCccchHHHHHHHhh-CCCCCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303         94 FSVGNRQSAYLDI---SVYIA-QFEAYTRPFIQHLMA-RKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEV  159 (161)
Q Consensus        94 ~sv~~r~~a~l~~---~~~va-~~~~Y~~~li~~L~~-~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v  159 (161)
                      -..+.++++--.+   +..+. ++..|-..++..|+. .+-.+....+++-++.+|++|....|+.+...+
T Consensus       682 ~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l  752 (852)
T 4fdd_A          682 EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPML  752 (852)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGH
T ss_pred             cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccH
Confidence            1123344443333   33332 467888888888876 222445679999999999999999999876543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=87.77  E-value=0.79  Score=38.60  Aligned_cols=128  Identities=17%  Similarity=0.138  Sum_probs=74.8

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCC--Cc-cc-cceeec
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPP--YG-ID-ILTRAD   92 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~--~g-i~-il~~~D   92 (161)
                      -.||-+++-.+-.+++...++...+.+    ..++...+-|.+-.+|++|..++.+++... |.-.  +. +. +++..+
T Consensus       416 ~~vr~~~~~~l~~l~~~~~~~~~~~~l----~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~-~~~~~~~~llp~l~~~~~  490 (588)
T 1b3u_A          416 WRVRLAIIEYMPLLAGQLGVEFFDEKL----NSLCMAWLVDHVYAIREAATSNLKKLVEKF-GKEWAHATIIPKVLAMSG  490 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGCCHHH----HHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-CHHHHHHHTHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHHcCHHHHHHHH----HHHHHHHhcCCcHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhh
Confidence            357778888888888877655433332    233444567999999999999999887665 3200  00 01 111110


Q ss_pred             hhhhhhhhhHHHHHHHHHhcC--ccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhccc
Q psy14303         93 YFSVGNRQSAYLDISVYIAQF--EAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPL  150 (161)
Q Consensus        93 y~sv~~r~~a~l~~~~~va~~--~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~  150 (161)
                      --....|..+...++.....+  +.|.+.++..|+. .+.+-++++|.-++++|+.+...
T Consensus       491 ~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          491 DPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-hCCCCCchHHHHHHHHHHHHHHH
Confidence            001123333332222222111  2355666666654 36788999999999999999864

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=87.72  E-value=0.69  Score=34.45  Aligned_cols=136  Identities=13%  Similarity=0.090  Sum_probs=79.0

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----C-CCcc-cccee
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----P-PYGI-DILTR   90 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~-~~gi-~il~~   90 (161)
                      ..+|-.|+..++.+++... +..+.+++.=+...++..+-+.+..+|+.|..++..+....+..    + ..++ .++..
T Consensus        16 ~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l   94 (252)
T 4hxt_A           16 SETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL   94 (252)
T ss_dssp             HHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHH
Confidence            5688889988888887753 22333444344555667778889999999999998887652110    0 0122 12222


Q ss_pred             echhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303         91 ADYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY  154 (161)
Q Consensus        91 ~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~  154 (161)
                      .+--....+.++...+.......++....     .+..|++ -+.+-|..+|+-++.+|++|+...|+.
T Consensus        95 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           95 LTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK-LLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            22112233333332222222122333222     3444443 345778999999999999999877765

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=87.29  E-value=1.3  Score=42.06  Aligned_cols=122  Identities=18%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC-CCCCCCccccceeechh
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ-GGNPPYGIDILTRADYF   94 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~-~g~~~~gi~il~~~Dy~   94 (161)
                      -..||.+|.+.+.++++. .|+.+.+++..+...|...+.-..|+             +... .|.|-|-.      | -
T Consensus      1019 ~~~vr~~a~~~l~~~~~~-~~~~~~~~l~~~lp~l~~~~~~~~~~-------------~~~v~~gp~k~~v------d-~ 1077 (1230)
T 1u6g_C         1019 DLNVRRVALVTFNSAAHN-KPSLIRDLLDTVLPHLYNETKVRKEL-------------IREVEMGPFKHTV------D-D 1077 (1230)
T ss_dssp             STHHHHHHHHHHHHHHHH-CGGGTGGGHHHHHHHHHHTTSCCGGG-------------EEEEEETTEEEEE------E-T
T ss_pred             cHHHHHHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHhcccHHh-------------heeeccCCccccc------C-C
Confidence            356999999999999987 45677788888888777665332221             1000 01111111      1 1


Q ss_pred             hhhhhhhHHHHHHHHHhcCcc--chHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhhhC
Q psy14303         95 SVGNRQSAYLDISVYIAQFEA--YTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTEVG  160 (161)
Q Consensus        95 sv~~r~~a~l~~~~~va~~~~--Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~v~  160 (161)
                      .+-.|++||--+...+.....  =-..++++.+ .++.. |.++|.++-.-|.+|...+|..+...++
T Consensus      1078 ~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~-~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~ 1143 (1230)
T 1u6g_C         1078 GLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVE-DGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHH-HTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-cccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            223445554444433322110  0122344422 25544 5899999999999999999998876654

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=84.98  E-value=1.6  Score=36.71  Aligned_cols=127  Identities=15%  Similarity=0.080  Sum_probs=66.6

Q ss_pred             hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC-C-CCccccc-ee-ech
Q psy14303         18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN-P-PYGIDIL-TR-ADY   93 (161)
Q Consensus        18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~-~-~~gi~il-~~-~Dy   93 (161)
                      .+|-+|+-++..++....+.    ..+.+ ..++...+-|++-.+|++|..++.++....|+. . +.=+.++ .. .|=
T Consensus       141 ~~R~~a~~~l~~~~~~~~~~----~~~~l-~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~  215 (588)
T 1b3u_A          141 TSRTSACGLFSVCYPRVSSA----VKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE  215 (588)
T ss_dssp             HHHHHHGGGHHHHTTTSCHH----HHHHH-HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHhcCHH----HHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCC
Confidence            44555555555554443321    11222 233445567999999999999998887666211 0 0001111 11 111


Q ss_pred             hhhhhhhhHHHHHHHHHhcCc--cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccC
Q psy14303         94 FSVGNRQSAYLDISVYIAQFE--AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLD  151 (161)
Q Consensus        94 ~sv~~r~~a~l~~~~~va~~~--~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~  151 (161)
                       ....|..+...+.......+  .+.+.++..|. ..+.+-+..+|+.++++|+.+....
T Consensus       216 -~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~~  273 (588)
T 1b3u_A          216 -QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR-QAAEDKSWRVRYMVADKFTELQKAV  273 (588)
T ss_dssp             -CHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHH-HHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHccCCCHHHHHHHHHHHHHHHHHh
Confidence             12334444433333333333  23344444433 3457888999999999999998754

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=84.65  E-value=2.4  Score=32.82  Aligned_cols=22  Identities=18%  Similarity=0.233  Sum_probs=15.7

Q ss_pred             HHHHhhcCCchhhhhhHHHHHH
Q psy14303         51 LVVTCYDKEINCRRAASAAFQE   72 (161)
Q Consensus        51 l~~alFDrevniRRaAsAAlQE   72 (161)
                      +...+-|++-.+|+.|..+|.+
T Consensus        59 L~~~l~d~~~~vR~~A~~aL~~   80 (280)
T 1oyz_A           59 AIEFCSDKNYIRRDIGAFILGQ   80 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHH
Confidence            3445678888899988777643

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=84.42  E-value=2.9  Score=37.96  Aligned_cols=113  Identities=11%  Similarity=0.052  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccC-CCCCCCcc-ccceeechhhhhhhhhHHHHHHHHHhcCc----
Q psy14303         41 PLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQ-GGNPPYGI-DILTRADYFSVGNRQSAYLDISVYIAQFE----  114 (161)
Q Consensus        41 ~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~-~g~~~~gi-~il~~~Dy~sv~~r~~a~l~~~~~va~~~----  114 (161)
                      +-.....+..++.++-|++-.+|+.+.-++-++..+- ++..|.=+ .+++...=-....+..+...+......++    
T Consensus        85 ~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~  164 (852)
T 4fdd_A           85 NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD  164 (852)
T ss_dssp             HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc
Confidence            3444555666666678999999999999999988764 23334322 22222211122344555444333333222    


Q ss_pred             -----cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303        115 -----AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY  154 (161)
Q Consensus       115 -----~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~  154 (161)
                           .+...++..|+. .+.+-+.++|..|.++|..+....|..
T Consensus       165 ~~~~~~~~~~il~~l~~-~l~~~~~~vR~~A~~aL~~~~~~~~~~  208 (852)
T 4fdd_A          165 SDVLDRPLNIMIPKFLQ-FFKHSSPKIRSHAVACVNQFIISRTQA  208 (852)
T ss_dssp             HCSSSSCHHHHHHHHTT-TTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred             hhhhcchHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence                 335667776665 567889999999999999888666543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=83.27  E-value=3.4  Score=39.90  Aligned_cols=104  Identities=13%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhh-----cCCchhhhhhHHHHHHHhccCCCCCCCccccceee
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCY-----DKEINCRRAASAAFQELVGRQGGNPPYGIDILTRA   91 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alF-----DrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~   91 (161)
                      =+.|+|+||..=|++-+-.++...+++..++..|+ ..+-     |+.+.+|..+    =..+||+ .            
T Consensus       467 W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll-~l~~~~~~~d~k~~v~~t~----~~~lGry-~------------  528 (1023)
T 4hat_C          467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL-DLCVKKRGKDNKAVVASDI----MYVVGQY-P------------  528 (1023)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH-HHHHHCCSHHHHHHHHHHH----HHHHHTC-H------------
T ss_pred             HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH-HhhhccccCcchHHHHHHH----HHHHHHH-H------------
Confidence            46799999999999999887667789999999655 4454     3333333322    2456777 1            


Q ss_pred             chhhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303         92 DYFSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF  155 (161)
Q Consensus        92 Dy~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~  155 (161)
                      +|                ++..++|-+++++.|+.. +..-++.+...|+.||..|+...+..+
T Consensus       529 ~w----------------l~~~~~~L~~vl~~L~~~-l~~~~~~v~~~A~~al~~l~~~c~~~l  575 (1023)
T 4hat_C          529 RF----------------LKAHWNFLRTVILKLFEF-MHETHEGVQDMACDTFIKIVQKCKYHF  575 (1023)
T ss_dssp             HH----------------HHHCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HH----------------HhccHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            22                233567788899988873 333357899999999999998766544

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=82.81  E-value=3  Score=34.34  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=68.5

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhhh
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSV   96 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~sv   96 (161)
                      ..||-.|+|.+..++|.+.+ ..+.+++.=....++..+-+.+..+|+.|..|+..+..-.    |.             
T Consensus       139 ~~v~~~A~~ALsnl~~~~~~-~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~----~~-------------  200 (296)
T 1xqr_A          139 DTVRVKALFAISCLVREQEA-GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH----PE-------------  200 (296)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GG-------------
T ss_pred             HHHHHHHHHHHHHHHcCCcH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC----hH-------------
Confidence            56899999999999998764 2334554223445566677889999999999998776432    10             


Q ss_pred             hhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHH
Q psy14303         97 GNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREY  154 (161)
Q Consensus        97 ~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~  154 (161)
                               ....+.+. ..-++|++.     +.+.|..+|+-++.+|++|+...|.-
T Consensus       201 ---------~~~~vv~~-g~i~~Lv~L-----L~~~d~~v~~~al~aL~~l~~~~~~~  243 (296)
T 1xqr_A          201 ---------HKGTLCSM-GMVQQLVAL-----VRTEHSPFHEHVLGALCSLVTDFPQG  243 (296)
T ss_dssp             ---------GHHHHHHT-THHHHHHHH-----HTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred             ---------HHHHHHHc-CCHHHHHHH-----HcCCChhHHHHHHHHHHHHHhCChhH
Confidence                     00011111 122344443     34668999999999999998876643

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=82.08  E-value=1.7  Score=40.98  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=64.3

Q ss_pred             hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhh----cCCchhhhhhHHHHHHHhccCCCCCCCccccceeech
Q psy14303         18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCY----DKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADY   93 (161)
Q Consensus        18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alF----DrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy   93 (161)
                      ..|+|+||.+=|++-......-++++..+...|+...-+    |+...+|  +.  .=+.+||+ .              
T Consensus       468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~--~~--~~~~lgry-~--------------  528 (1049)
T 3m1i_C          468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVA--SD--IMYVVGQY-P--------------  528 (1049)
T ss_dssp             HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHH--HH--HHHHHHHC-H--------------
T ss_pred             HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHH--HH--HHHHHHHH-H--------------
Confidence            579999999999886654322224456666665542211    1111111  11  11366666 1              


Q ss_pred             hhhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHH
Q psy14303         94 FSVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYF  155 (161)
Q Consensus        94 ~sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~  155 (161)
                                    ......++|.+.+++.|+. ++.+-++.++..|+.||.+++...+..+
T Consensus       529 --------------~~~~~~~~~l~~vl~~ll~-~l~~~~~~V~~~A~~al~~l~~~~~~~l  575 (1049)
T 3m1i_C          529 --------------RFLKAHWNFLRTVILKLFE-FMHETHEGVQDMACDTFIKIVQKCKYHF  575 (1049)
T ss_dssp             --------------HHHHHCHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             --------------HHHHhHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence                          1122234677788888887 5777789999999999999998766554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=81.59  E-value=2.8  Score=32.11  Aligned_cols=132  Identities=11%  Similarity=0.025  Sum_probs=74.8

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhh-cCCchhhhhhHHHHHHHhccCCCC-C-CCccccce-ee
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCY-DKEINCRRAASAAFQELVGRQGGN-P-PYGIDILT-RA   91 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alF-DrevniRRaAsAAlQE~vGR~~g~-~-~~gi~il~-~~   91 (161)
                      --.+|-+|...+=.+..... +...+....++..| ...+- |.+.++|.+|..++.++.-.. |. | |+-..|+. +.
T Consensus        28 ~w~~R~~a~~~L~~l~~~~~-~~~~~~~~~i~~~L-~~~l~kd~~~~V~~~a~~~l~~la~~l-~~~~~~~~~~ilp~ll  104 (242)
T 2qk2_A           28 KWTLRKESLEVLEKLLTDHP-KLENGEYGALVSAL-KKVITKDSNVVLVAMAGKCLALLAKGL-AKRFSNYASACVPSLL  104 (242)
T ss_dssp             SHHHHHHHHHHHHHHHHHCS-SBCCCCCHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHH-GGGGHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCC-CCCCCCHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Confidence            34566677777777776622 11222233444433 33454 999999999999999998666 42 2 11111211 11


Q ss_pred             chh---hhhhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhh-cccChH
Q psy14303         92 DYF---SVGNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRL-VPLDRE  153 (161)
Q Consensus        92 Dy~---sv~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L-~~~~p~  153 (161)
                      +.+   ....|..+..-+...+...+  .+.+++.|.. .+.|-++.+|+-+...|+.+ ....|+
T Consensus       105 ~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~-~l~~~~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A          105 EKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVE-SLSNKNPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             HGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence            111   22333444333333333322  3567777665 46677889999999999995 444566

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=80.50  E-value=1.2  Score=39.63  Aligned_cols=133  Identities=17%  Similarity=0.135  Sum_probs=80.2

Q ss_pred             hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCC-----------chhhhhhHHHHHHHhccCCCCC----C
Q psy14303         18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKE-----------INCRRAASAAFQELVGRQGGNP----P   82 (161)
Q Consensus        18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDre-----------vniRRaAsAAlQE~vGR~~g~~----~   82 (161)
                      .+|-+++..+=.+++...+ .+.+++..+...|+.. +=++.           .++|.++..++++++.-.++..    +
T Consensus       708 ~~~~~~~~~l~~i~~~~g~-~~~~~l~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~  785 (876)
T 1qgr_A          708 SVKPQILSVFGDIALAIGG-EFKKYLEVVLNTLQQA-SQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP  785 (876)
T ss_dssp             GGHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHH-HTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred             HhhHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHH-HhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccc
Confidence            4665554444444665544 4667777777665443 33321           3899999999998876652211    0


Q ss_pred             --Ccc-----ccceee-----chh-hhhhhhhHHHHHHHHHhcCc-----cc-hHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy14303         83 --YGI-----DILTRA-----DYF-SVGNRQSAYLDISVYIAQFE-----AY-TRPFIQHLMARKVEHWDPEIRKLTAKT  143 (161)
Q Consensus        83 --~gi-----~il~~~-----Dy~-sv~~r~~a~l~~~~~va~~~-----~Y-~~~li~~L~~~~l~hwD~~iR~Laa~a  143 (161)
                        ..+     .|++..     |-. ..+.|+.|..-++..+..++     .| .+.++..|+...+.+-|+.+|+.|+.|
T Consensus       786 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a  865 (876)
T 1qgr_A          786 DVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA  865 (876)
T ss_dssp             GGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHH
Confidence              111     122111     211 44566666655555443332     24 456777787767788899999999999


Q ss_pred             HhhhcccCh
Q psy14303        144 LPRLVPLDR  152 (161)
Q Consensus       144 l~~L~~~~p  152 (161)
                      ++.+.+.+|
T Consensus       866 ~~~~~~~~~  874 (876)
T 1qgr_A          866 TKELRKLKN  874 (876)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhc
Confidence            999987665

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=80.49  E-value=3.7  Score=34.96  Aligned_cols=135  Identities=13%  Similarity=0.042  Sum_probs=76.2

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCC---------CCCCCcccc
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQG---------GNPPYGIDI   87 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~---------g~~~~gi~i   87 (161)
                      ..||..|+..++.++.... +.....+..-+...++..+-+++..+|..|..+|..+.+-.+         |.+|   .+
T Consensus       145 ~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~---~L  220 (530)
T 1wa5_B          145 EMLQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME---PI  220 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH---HH
T ss_pred             HHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHH---HH
Confidence            4588888888888876431 111222222223444445557889999999999998876421         2222   22


Q ss_pred             ceeechhhhhhhhhHHHHHHHHHhcC-cc----chHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303         88 LTRADYFSVGNRQSAYLDISVYIAQF-EA----YTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFL  156 (161)
Q Consensus        88 l~~~Dy~sv~~r~~a~l~~~~~va~~-~~----Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~  156 (161)
                      +++..--....+.++...++.....- +.    ....++..|+. -+.+.|..+|.-++.+|+.|+...|+.+.
T Consensus       221 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~~~~~~~~~  293 (530)
T 1wa5_B          221 LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK-LIYSMDTETLVDACWAISYLSDGPQEAIQ  293 (530)
T ss_dssp             HHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            22222123344455443333322111 11    11234444443 34678999999999999999987776443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	94.92
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	94.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	94.43
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	91.91
d1b3ua_	588	Constant regulatory domain of protein phosphatase	91.38
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	91.37
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	89.23
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	87.4
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	80.11
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	80.02

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.017  Score=43.62  Aligned_cols=141  Identities=13%  Similarity=0.031  Sum_probs=84.6

Q ss_pred             CCCchhhchhhHHHHHHhhccCccccHH-HHH-HHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC-----CCCccc
Q psy14303         14 SVGSYIRDAACYVCWAFARAYDHHTLEP-LVQ-QIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN-----PPYGID   86 (161)
Q Consensus        14 s~G~~VRDAacf~~WslaR~y~~~~l~~-~~~-~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~-----~~~gi~   86 (161)
                      +-...||-.||.+++.+++...  ..+. .+. .....|+...--|.+..+|+.|..|+..++...+..     -..|++
T Consensus        70 s~~~~vr~~A~~~L~~l~~~~~--~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~  147 (264)
T d1xqra1          70 AGAAGLRWRAAQLIGTCSQNVA--AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS  147 (264)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhh
Confidence            4456899999999999997542  1222 222 445555554445778889999999999887544211     123442


Q ss_pred             c-ceeechhhhhhhhhHHHHHHHHHhcCccchHHH-----HHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303         87 I-LTRADYFSVGNRQSAYLDISVYIAQFEAYTRPF-----IQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT  157 (161)
Q Consensus        87 i-l~~~Dy~sv~~r~~a~l~~~~~va~~~~Y~~~l-----i~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~  157 (161)
                      . +....--.-..+.++-..+.......++....+     +..|+. -+.+-|+++|+.+..+|..|+...|+...+
T Consensus       148 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~-lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~  223 (264)
T d1xqra1         148 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA-LVRTEHSPFHEHVLGALCSLVTDFPQGVRE  223 (264)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHH-HHTSCCSTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHH-HHcCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            2 222221122334444444443333344333222     334433 246789999999999999999988877643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.033  Score=49.03  Aligned_cols=119  Identities=20%  Similarity=0.296  Sum_probs=80.2

Q ss_pred             ccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC-CC--------------ccccce---------ee
Q psy14303         36 HHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP-PY--------------GIDILT---------RA   91 (161)
Q Consensus        36 ~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~-~~--------------gi~il~---------~~   91 (161)
                      ++.+.+++..+...++ ..+-|++..+||+|-.+|.-.+-..|..+ ||              .-+++.         ++
T Consensus       994 ~~~~~~~l~~li~~ll-~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~ 1072 (1207)
T d1u6gc_         994 PQPIDPLLKNCIGDFL-KTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1072 (1207)
T ss_dssp             CCTHHHHHHHHSTTTH-HHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEE
T ss_pred             chhhHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCceeec
Confidence            3445677777777776 56899999999999999987776553211 21              001222         33


Q ss_pred             chhhhhhhhhHHHHHHHHHhcCc-c-chHHHHHHHhhCCC-CCCCHHHHHHHHHHHhhhcccChHHHHhhh
Q psy14303         92 DYFSVGNRQSAYLDISVYIAQFE-A-YTRPFIQHLMARKV-EHWDPEIRKLTAKTLPRLVPLDREYFLTEV  159 (161)
Q Consensus        92 Dy~sv~~r~~a~l~~~~~va~~~-~-Y~~~li~~L~~~~l-~hwD~~iR~Laa~al~~L~~~~p~~~~~~v  159 (161)
                      |. -+-.|+.||.-+..-+.... . --..+++++.. |+ .|+  .||.|+-..|.+|+...|..+.+.+
T Consensus      1073 d~-gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~-gl~d~~--di~~~~~~~l~~l~~~~~~~~~~~l 1139 (1207)
T d1u6gc_        1073 DD-GLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVED-GLKDHY--DIKMLTFLMLVRLSTLCPSAVLQRL 1139 (1207)
T ss_dssp             ET-HHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHH-TTSSCH--HHHHHHHHHHHHHHHSCCHHHHTTT
T ss_pred             CC-cHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHh-cccchH--HHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            44 67799999987776665432 1 11334566554 56 454  5999999999999999998776554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.015  Score=47.38  Aligned_cols=133  Identities=17%  Similarity=0.131  Sum_probs=74.8

Q ss_pred             chhhchhhHHHHHHhhccCccccHH----HHHHH------------------------------HHHHHHHHhhcCCchh
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEP----LVQQI------------------------------AQGLLVVTCYDKEINC   62 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~----~~~~l------------------------------~~~Ll~~alFDrevni   62 (161)
                      ..||++|+-....++...+++.+++    .+..+                              +..++...+-|++..+
T Consensus       101 ~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~l~~~~~~l~~D~~~~V  180 (588)
T d1b3ua_         101 TVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV  180 (588)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCCHHH
Confidence            4588888888888887766554332    21111                              2234555678999999


Q ss_pred             hhhhHHHHHHHhccCCCCCCCccccceeechh----hhhhhhhHHHHHHHHHhcCc--cchHHHHHHHhhCCCCCCCHHH
Q psy14303         63 RRAASAAFQELVGRQGGNPPYGIDILTRADYF----SVGNRQSAYLDISVYIAQFE--AYTRPFIQHLMARKVEHWDPEI  136 (161)
Q Consensus        63 RRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~----sv~~r~~a~l~~~~~va~~~--~Y~~~li~~L~~~~l~hwD~~i  136 (161)
                      |++|..++.+++... +.-.---+|+....-.    .-..|..+...+.......+  ++...++.. +...+.+.+..+
T Consensus       181 R~~a~~~l~~~~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~-l~~~~~D~~~~V  258 (588)
T d1b3ua_         181 RRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPT-LRQAAEDKSWRV  258 (588)
T ss_dssp             HHHHHHHHHHHHHTS-CHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHH-HHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHH-HHHhcccccHHH
Confidence            999999999998876 3210000122211100    12234444444333333332  222223332 222346778889


Q ss_pred             HHHHHHHHhhhcccC
Q psy14303        137 RKLTAKTLPRLVPLD  151 (161)
Q Consensus       137 R~Laa~al~~L~~~~  151 (161)
                      |..++++|+.+....
T Consensus       259 r~~~~~~l~~l~~~~  273 (588)
T d1b3ua_         259 RYMVADKFTELQKAV  273 (588)
T ss_dssp             HHHHHHTHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHh
Confidence            999999999987543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.071  Score=46.79  Aligned_cols=145  Identities=12%  Similarity=0.112  Sum_probs=85.0

Q ss_pred             CCCchhhchhhHHHHHHhhccCcc-----ccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC-CCcccc
Q psy14303         14 SVGSYIRDAACYVCWAFARAYDHH-----TLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP-PYGIDI   87 (161)
Q Consensus        14 s~G~~VRDAacf~~WslaR~y~~~-----~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~-~~gi~i   87 (161)
                      +....+||.++..+..+.....+.     ........+...|.....=..+..+|..|..++.|++.+.|..+ |+-.++
T Consensus        94 ~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~i  173 (1207)
T d1u6gc_          94 SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI  173 (1207)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHH
T ss_pred             CCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHH
Confidence            346678999999888877654321     22234445555544444445678899999999999999994333 222233


Q ss_pred             ce----eechhhhhhhhhHHHHHHHHHhcCc-cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHhh
Q psy14303         88 LT----RADYFSVGNRQSAYLDISVYIAQFE-AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLTE  158 (161)
Q Consensus        88 l~----~~Dy~sv~~r~~a~l~~~~~va~~~-~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~~  158 (161)
                      ++    ..+--..+.|++|..-++..+...+ ++...++++++..-..+-+...|+.+.++++.|+...|..+...
T Consensus       174 l~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  249 (1207)
T d1u6gc_         174 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY  249 (1207)
T ss_dssp             HHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHH
Confidence            33    2222245567777766665554432 23344555555422233344556677888888887777655443

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.23  Score=40.11  Aligned_cols=130  Identities=15%  Similarity=0.090  Sum_probs=78.6

Q ss_pred             CchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC-CCCccccce-eech
Q psy14303         16 GSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN-PPYGIDILT-RADY   93 (161)
Q Consensus        16 G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~-~~~gi~il~-~~Dy   93 (161)
                      .-.+|.+++-.++.++..+.++...+.+.    .++...+-|+.-.+|.+|..++-+++-.+ |. .... .|+. +.++
T Consensus       415 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~----~~l~~~l~D~~~~VR~~A~~~L~~l~~~~-~~~~~~~-~i~~~l~~~  488 (588)
T d1b3ua_         415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLN----SLCMAWLVDHVYAIREAATSNLKKLVEKF-GKEWAHA-TIIPKVLAM  488 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCGGGCCHHHH----HHHHHGGGCSSHHHHHHHHHHHHHHHHHH-CHHHHHH-HTHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHcChHhHHHHHH----HHHHhhccCCchhHHHHHHHHHHHHHHHh-CcHHHHH-HHHHHHHHH
Confidence            44699999999999999887765554443    34556678999999999999998887655 32 1000 1111 1111


Q ss_pred             hh---hhhhhhHHHHHHHHHhc-Cc--cchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChH
Q psy14303         94 FS---VGNRQSAYLDISVYIAQ-FE--AYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDRE  153 (161)
Q Consensus        94 ~s---v~~r~~a~l~~~~~va~-~~--~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~  153 (161)
                      ..   -..|. +.+.....+.. ++  .+.+.++..|+. .+.+-.+++|.-++++|+++....++
T Consensus       489 ~~~~~~~~R~-~~~~~l~~l~~~~~~~~~~~~ilp~ll~-~~~D~v~nVR~~a~~~l~~i~~~~~~  552 (588)
T d1b3ua_         489 SGDPNYLHRM-TTLFCINVLSEVCGQDITTKHMLPTVLR-MAGDPVANVRFNVAKSLQKIGPILDN  552 (588)
T ss_dssp             TTCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHH-GGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred             hcCCCHHHHH-HHHHHHHHHHHHcChHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence            11   01122 22333223322 11  233445554444 45677899999999999999865443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.58  Score=35.15  Aligned_cols=100  Identities=18%  Similarity=0.155  Sum_probs=66.6

Q ss_pred             chhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCCCCccccceeechhhh
Q psy14303         17 SYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNPPYGIDILTRADYFSV   96 (161)
Q Consensus        17 ~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~~~gi~il~~~Dy~sv   96 (161)
                      ..+|.+|+-.+..++..+..+.+ +.    +...+...+-|++-.+|.||.-+|-++....   .+              
T Consensus       341 ~~~~~~a~~~l~~l~~~~~~~~~-~~----l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~---~~--------------  398 (458)
T d1ibrb_         341 WNPCKAAGVCLMLLATCCEDDIV-PH----VLPFIKEHIKNPDWRYRDAAVMAFGCILEGP---EP--------------  398 (458)
T ss_dssp             CSHHHHHHHHHHHHHHHTTTTHH-HH----HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS---CT--------------
T ss_pred             ccHHHHHHHHHHHHHHhccHhhh-hH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc---CH--------------
Confidence            46889999999999988864322 22    2334445566889999999988886654211   11              


Q ss_pred             hhhhhHHHHHHHHHhcCccchHHHHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChH
Q psy14303         97 GNRQSAYLDISVYIAQFEAYTRPFIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDRE  153 (161)
Q Consensus        97 ~~r~~a~l~~~~~va~~~~Y~~~li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~  153 (161)
                                    ....+|-+.++..|+. .+.+-++.+|.-|+.+|++++..-|+
T Consensus       399 --------------~~~~~~l~~i~~~l~~-~l~d~~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         399 --------------SQLKPLVIQAMPTLIE-LMKDPSVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             --------------TTTCTTTTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             --------------hHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence                          0112233346665554 46789999999999999999865543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.23  E-value=0.43  Score=38.92  Aligned_cols=141  Identities=9%  Similarity=0.048  Sum_probs=85.8

Q ss_pred             CCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCCC--CCcc-ccceee
Q psy14303         15 VGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGNP--PYGI-DILTRA   91 (161)
Q Consensus        15 ~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~~--~~gi-~il~~~   91 (161)
                      --...|+++++.+.+++....+..+++++..++.. +...+-|++..+|.++.-++..+..-.+..+  +..+ .++...
T Consensus       381 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l  459 (861)
T d2bpta1         381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPS-ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC  459 (861)
T ss_dssp             SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH-HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH-HHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHH
Confidence            34568999999999999888777778888877665 4567889999999999988876654431111  1111 111110


Q ss_pred             -chh--hhhhhhhHHHHHHHH---Hh-----cCccchHHHHHHHhh-CCCCCCCHHHHHHHHHHHhhhcccChHHHH
Q psy14303         92 -DYF--SVGNRQSAYLDISVY---IA-----QFEAYTRPFIQHLMA-RKVEHWDPEIRKLTAKTLPRLVPLDREYFL  156 (161)
Q Consensus        92 -Dy~--sv~~r~~a~l~~~~~---va-----~~~~Y~~~li~~L~~-~~l~hwD~~iR~Laa~al~~L~~~~p~~~~  156 (161)
                       .-.  ......++.......   ..     .+..+...++..|+. ..-.+.+..+|..+..++..+....|+.+.
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~  536 (861)
T d2bpta1         460 LIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA  536 (861)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred             HhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence             000  001111111111111   11     234566777777776 333667888999999999888776665543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.11  E-value=3.2  Score=32.54  Aligned_cols=138  Identities=13%  Similarity=0.033  Sum_probs=76.7

Q ss_pred             hhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCCC----CCCcc--ccceee
Q psy14303         18 YIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGGN----PPYGI--DILTRA   91 (161)
Q Consensus        18 ~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g~----~~~gi--~il~~~   91 (161)
                      .++-.++.++|.+++...+..-...+..++. .+...+...+-.++..+..++..+....+..    +..|+  .++...
T Consensus       219 ~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~-~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  297 (503)
T d1wa5b_         219 SLIRTATWTLSNLCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL  297 (503)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHH-HHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHH-HHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcc
Confidence            3455677889999988765322233334433 3445566777888999999998877533111    11121  122222


Q ss_pred             chhhhhhhhhHHHHHHHHHhcCccchHH-----HHHHHhhCCCCCCCHHHHHHHHHHHhhhcccChHHHHh
Q psy14303         92 DYFSVGNRQSAYLDISVYIAQFEAYTRP-----FIQHLMARKVEHWDPEIRKLTAKTLPRLVPLDREYFLT  157 (161)
Q Consensus        92 Dy~sv~~r~~a~l~~~~~va~~~~Y~~~-----li~~L~~~~l~hwD~~iR~Laa~al~~L~~~~p~~~~~  157 (161)
                      +--....+..+...+.......+++...     +++.|.. -+.+-|..+|+.++.+|++++..+|+....
T Consensus       298 ~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~  367 (503)
T d1wa5b_         298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL-LLSSPKENIKKEACWTISNITAGNTEQIQA  367 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             cCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHH-HhcCCCHHHHHHHHHHHHHHhhccHHHHHH
Confidence            2212222333333322222222333332     2334433 357889999999999999999888876543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.02  E-value=1.3  Score=33.11  Aligned_cols=65  Identities=8%  Similarity=-0.069  Sum_probs=48.3

Q ss_pred             CCchhhchhhHHHHHHhhccCccccHHHHHHHHHHHHHHHhhcCCchhhhhhHHHHHHHhccCCC
Q psy14303         15 VGSYIRDAACYVCWAFARAYDHHTLEPLVQQIAQGLLVVTCYDKEINCRRAASAAFQELVGRQGG   79 (161)
Q Consensus        15 ~G~~VRDAacf~~WslaR~y~~~~l~~~~~~l~~~Ll~~alFDrevniRRaAsAAlQE~vGR~~g   79 (161)
                      .+..||.++...+..+.....+....+........++...+-|++..+|+++..++.+++...+.
T Consensus       185 ~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  249 (458)
T d1ibrb_         185 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  249 (458)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence            45679999998888888765432222334455666777788899999999999999999888743