Psyllid ID: psy14512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MFASAAAASPESSSPLPIEAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKVYPGRTLSHQDKVRPGQKSNPQPSAYKADALPTKLTRLV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccHHHHccccccccEcc
Coil and Loop (DISEMBL)
mfasaaaaspesssplpieapkgaesavnpekklkpccacpetkkVRDACQREkedrigesqpfqeqtlshqdkvypgrtlshqdkvrpgqksnpqpsaykadalptkltrlv
Flexible Loop (DISEMBL)
mfasaaaaspesssplpieapkgaesavnpekklkpccacpetKKVRDACQREKEdrigesqpfqeqtlshqdkvypGRTLshqdkvrpgqksnpqpsaykadalptkltrlv
Low Complexity Region (SEG)
MFasaaaaspesssplpieapKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKVYPGRTLSHQDKVRPGQKSNPQPSAYKADALPTKLTRLV
Disordered region (IsUnstruct)
*****************************************************************************************************************
Disordered Region (DISOPRED)
*************************************CACPETKKVRDACQR*********************KVYPG*************************ALPTKLTRL*
Disordered Region (DISEMBL)
******************************EKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKVYPGRTLS****************AYKADALPTKLTRLV
Disordered Region (DISPRO)
*******************************KKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQ*L*HQ***************************YKADALPTKL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFASAAAASPESSSPLPIEAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKVYPGRTLSHQDKVRPGQKSNPQPSAYKADALPTKLTRLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
UNIPROTKB|F1NPL9	58	COX17 "Uncharacterized protein	0.336	0.655	0.641	5.3e-08
WB|WBGene00018240	63	F40G9.2 [Caenorhabditis elegan	0.345	0.619	0.609	6.8e-08
UNIPROTKB|F6QD94	63	COX17 "Uncharacterized protein	0.318	0.571	0.621	6.1e-07
UNIPROTKB|Q6J3Q7	63	COX17 "Cytochrome c oxidase co	0.318	0.571	0.621	1e-06
UNIPROTKB|H7C4E5	58	COX17 "Cytochrome c oxidase co	0.256	0.5	0.741	1.3e-06
UNIPROTKB|Q14061	63	COX17 "Cytochrome c oxidase co	0.256	0.460	0.741	1.3e-06
UNIPROTKB|D2XUP7	63	COX17 "Cytochrome c oxidase co	0.256	0.460	0.741	1.3e-06
UNIPROTKB|P81045	62	COX17 "Cytochrome c oxidase co	0.256	0.467	0.741	1.3e-06
RGD|620548	63	Cox17 "cytochrome c oxidase as	0.256	0.460	0.741	1.3e-06
ZFIN|ZDB-GENE-040912-91	68	cox17 "COX17 cytochrome c oxid	0.256	0.426	0.666	4.3e-06

UNIPROTKB|F1NPL9 COX17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 25/39 (64%), Positives = 28/39 (71%)

Query:    22 KGAESAVNPEKKLKPCCACPETKKVRDACQREK-EDRIG 59
             KGA  A + +K LKPCCACPETKK RDAC  EK E+  G
Sbjct:     3 KGAGEARDEKKPLKPCCACPETKKARDACIIEKGEENCG 41

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0016531 "copper chaperone activity" evidence=IEA

WB|WBGene00018240 F40G9.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query:    22 KGAES-AVNPEKKLKPCCACPETKKVRDACQREK-EDRIGE 60
             K  E+ +V PEKKLK CCACPETK+VRDAC  E  E++ G+
Sbjct:     7 KSTEAGSVAPEKKLKACCACPETKRVRDACIIENGEEKCGK 47

GO:0005507 "copper ion binding" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0016531 "copper chaperone activity" evidence=IEA

UNIPROTKB|F6QD94 COX17 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/37 (62%), Positives = 26/37 (70%)

Query:    24 AESAVNPEKKLKPCCACPETKKVRDACQREK-EDRIG 59
             A S    +K LKPCCACPETKK RDAC  EK E++ G
Sbjct:    10 APSESQEKKPLKPCCACPETKKARDACIIEKGEEQCG 46

GO:0016531 "copper chaperone activity" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|Q6J3Q7 COX17 "Cytochrome c oxidase copper chaperone" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/37 (62%), Positives = 25/37 (67%)

Query:    24 AESAVNPEKKLKPCCACPETKKVRDACQREK-EDRIG 59
             A S    +K LKPCCACPETKK RDAC  EK E+  G
Sbjct:    10 APSDSQEKKPLKPCCACPETKKARDACIIEKGEEHCG 46

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0016531 "copper chaperone activity" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

UNIPROTKB|H7C4E5 COX17 "Cytochrome c oxidase copper chaperone" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query:    31 EKK-LKPCCACPETKKVRDACQREK-EDRIG 59
             EKK LKPCCACPETKK RDAC  EK E+  G
Sbjct:    11 EKKPLKPCCACPETKKARDACIIEKGEEHCG 41

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0016531 "copper chaperone activity" evidence=IEA

UNIPROTKB|Q14061 COX17 "Cytochrome c oxidase copper chaperone" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query:    31 EKK-LKPCCACPETKKVRDACQREK-EDRIG 59
             EKK LKPCCACPETKK RDAC  EK E+  G
Sbjct:    16 EKKPLKPCCACPETKKARDACIIEKGEEHCG 46

GO:0006825 "copper ion transport" evidence=IEA

GO:0016531 "copper chaperone activity" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005507 "copper ion binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006091 "generation of precursor metabolites and energy" evidence=TAS

UNIPROTKB|D2XUP7 COX17 "Cytochrome c oxidase copper chaperone" [Sus scrofa (taxid:9823)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query:    31 EKK-LKPCCACPETKKVRDACQREK-EDRIG 59
             EKK LKPCCACPETKK RDAC  EK E+  G
Sbjct:    16 EKKPLKPCCACPETKKARDACIIEKGEEHCG 46

GO:0016531 "copper chaperone activity" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|P81045 COX17 "Cytochrome c oxidase copper chaperone" [Sus scrofa (taxid:9823)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query:    31 EKK-LKPCCACPETKKVRDACQREK-EDRIG 59
             EKK LKPCCACPETKK RDAC  EK E+  G
Sbjct:    15 EKKPLKPCCACPETKKARDACIIEKGEEHCG 45

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0016531 "copper chaperone activity" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

RGD|620548 Cox17 "cytochrome c oxidase assembly homolog 17 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query:    31 EKK-LKPCCACPETKKVRDACQREK-EDRIG 59
             EKK LKPCCACPETKK RDAC  EK E+  G
Sbjct:    16 EKKPLKPCCACPETKKARDACIIEKGEEHCG 46

GO:0003674 "molecular_function" evidence=ND

GO:0005507 "copper ion binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0007420 "brain development" evidence=IEP

GO:0007507 "heart development" evidence=IEP

GO:0008047 "enzyme activator activity" evidence=ISO

GO:0016531 "copper chaperone activity" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=ISO

ZFIN|ZDB-GENE-040912-91 cox17 "COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/33 (66%), Positives = 24/33 (72%)

Query:    22 KGAESAVNPEKKLKPCCACPETKKVRDACQREK 54
             +GAE     +K LKPCCACPETKK RDAC  EK
Sbjct:    17 EGAEQ----KKPLKPCCACPETKKERDACIIEK 45

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0016531 "copper chaperone activity" evidence=IEA

GO:0006825 "copper ion transport" evidence=IEA

GO:0005507 "copper ion binding" evidence=IEA

GO:0046688 "response to copper ion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	113
pfam05051	48	pfam05051, COX17, Cytochrome C oxidase copper chap	1e-07

>gnl|CDD|203162 pfam05051, COX17, Cytochrome C oxidase copper chaperone (COX17)

 Score = 44.6 bits (106), Expect = 1e-07
 Identities = 16/21 (76%), Positives = 16/21 (76%)

Query: 30 PEKKLKPCCACPETKKVRDAC 50
           EK  KPCCACPETKK RD C
Sbjct: 1  EEKPKKPCCACPETKKARDEC 21

Cox17 is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in yeast. The structure of Cox17 shows the protein to have an unstructured N-terminal region followed by two helices and several unstructured C-terminal residues. The Cu(I) binding site has been modelled as two-coordinate with ligation by conserved residues Cys23 and Cys26. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG3496|consensus	72		99.82
PF05051	49	COX17: Cytochrome C oxidase copper chaperone (COX1	99.81
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	90.99
PF08991	67	DUF1903: Domain of unknown function (DUF1903); Int	85.96

>KOG3496|consensus

Probab=99.82  E-value=2.5e-21  Score=133.28  Aligned_cols=52  Identities=38%  Similarity=0.677  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCCCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhcc
Q psy14512         19 EAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQ   72 (113)
Q Consensus        19 ~~p~~a~~~~~~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~   72 (113)
                      ..++.......+++|+||||||||||++||.|||+||+|  +|..|||+|+.|-
T Consensus        14 ~~~~~~~~a~eek~K~KpCCaCpetK~~RDaCIle~gee--~C~~lIEahk~CM   65 (72)
T KOG3496|consen   14 DKPAPQANAAEEKPKPKPCCACPETKKARDACILENGEE--KCGKLIEAHKECM   65 (72)
T ss_pred             CCCccccccccccCCCCccccCCchhhhhhhHhhhcCHH--HHHHHHHHHHHHH
Confidence            344455555668889999999999999999999999999  7999999999995

>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae []

Probab=99.81  E-value=3.3e-21  Score=124.24  Aligned_cols=41  Identities=39%  Similarity=0.669  Sum_probs=33.7

Q ss_pred             CCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhcc
Q psy14512         30 PEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQ   72 (113)
Q Consensus        30 ~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~   72 (113)
                      +++++||||||||||++||+|||+||+|+  |++|||+|++|-
T Consensus         2 ~kP~~KpCCaCpetK~aRDeC~l~~g~e~--C~~~Ieahk~Cm   42 (49)
T PF05051_consen    2 EKPKKKPCCACPETKKARDECILFNGEED--CKELIEAHKACM   42 (49)
T ss_dssp             SS----TTTTSHHHHHHHHHHHHHC-CCC--CHHHHHHHHHHH
T ss_pred             CCCCCCcCccChhHHHHhHhhHHhcChHH--HHHHHHHHHHHH
Confidence            34558999999999999999999999995  999999999995

; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=90.99  E-value=0.12  Score=28.96  Aligned_cols=32  Identities=16%  Similarity=0.042  Sum_probs=24.5

Q ss_pred             ccccccchhhhhccCCcCCCHHHHHHHhhccC
Q psy14512         42 ETKKVRDACQREKEDRIGESQPFQEQTLSHQD   73 (113)
Q Consensus        42 etKkaRDeCil~~GeE~c~Ck~lIEayksc~~   73 (113)
                      ++.++==+|+-.|+.+..+|++++++|+.|.-
T Consensus         3 ~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~   34 (35)
T PF06747_consen    3 EEMKAYLACLKENNFDWSKCRKEFKAYKECRM   34 (35)
T ss_dssp             HHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhh
Confidence            33344447899999888899999999999964

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []

Probab=85.96  E-value=0.68  Score=31.07  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=24.2

Q ss_pred             chhhhhccCCcCCCHHHHHHHhhccCcccCCC
Q psy14512         48 DACQREKEDRIGESQPFQEQTLSHQDKVYPGR   79 (113)
Q Consensus        48 DeCil~~GeE~c~Ck~lIEayksc~~~~~~~~   79 (113)
                      -.|+-.|+-+...|.++|++|+.|-...|--+
T Consensus        12 q~CL~~N~Yd~~kC~~~i~~l~~Cck~~y~~~   43 (67)
T PF08991_consen   12 QKCLQRNNYDESKCQDYIDALYECCKKFYEQR   43 (67)
T ss_dssp             HHHHHHTTT-CCCTHHHHHHHHHHHTTS----
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence            46888888777799999999999999887543

MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
2rn9_A	67	Solution Structure Of Human Apocox17 Length = 67		2e-04
2l0y_B	67	Complex Hmia40-Hcox17 Length = 67		8e-04

>pdb|2RN9|A Chain A, Solution Structure Of Human Apocox17 Length = 67

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/23 (82%), Positives = 19/23 (82%)
Query: 32 KKLKPCCACPETKKVRDACQREK 54
          K LKPCCACPETKK RDAC  EK
Sbjct: 22 KPLKPCCACPETKKARDACIIEK 44

>pdb|2L0Y|B Chain B, Complex Hmia40-Hcox17 Length = 67

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/21 (80%), Positives = 17/21 (80%)
Query: 34 LKPCCACPETKKVRDACQREK 54
          LKPCC CPETKK RDAC  EK
Sbjct: 24 LKPCCTCPETKKARDACIIEK 44

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
1u96_A	69	Cytochrome C oxidase copper chaperone; metallochap	6e-08
2l0y_B	67	HCG2020266, COX17 cytochrome C oxidase assembly ho	4e-06

>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A Length = 69

 Score = 45.3 bits (107), Expect = 6e-08
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 19 EAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQ 67
          +  +  E+    E K KPCC C   K+ RD C         + + F E+
Sbjct: 5  DKKQEQENHAECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEK 53

>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A Length = 67

 Score = 40.5 bits (94), Expect = 4e-06
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 17 PIEAPKGAESAVNPEKKLKPCCACPETKKVRDAC 50
           +     A      ++ LKPCC CPETKK RDAC
Sbjct: 7  GLVDSNPALPESQEKRPLKPCCTCPETKKARDAC 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
1u96_A	69	Cytochrome C oxidase copper chaperone; metallochap	99.84
2l0y_B	67	HCG2020266, COX17 cytochrome C oxidase assembly ho	99.81
1hp8_A	68	HU-P8; leukemia, cysteine motif; NMR {Homo sapiens	88.64
1ei0_A	38	P8MTCP1; helix-turn-helix, disulfide bridges, cell	82.8
2lqt_A	85	Coiled-coil-helix-coiled-coil-helix domain-contai	81.53

>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A

Probab=99.84  E-value=5.6e-22  Score=134.25  Aligned_cols=45  Identities=29%  Similarity=0.504  Sum_probs=41.8

Q ss_pred             CCCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhccC
Q psy14512         29 NPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQD   73 (113)
Q Consensus        29 ~~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~   73 (113)
                      ..++++||||||||||++||+|||++|+++.+|++|||+|+.|-.
T Consensus        15 ~~~~k~KpCCaCpetK~aRDeCil~~gee~~~C~~lIeahk~CMr   59 (69)
T 1u96_A           15 ECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKECMK   59 (69)
T ss_dssp             SCCCCCCCCTTSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHHHH
T ss_pred             cCCCCCCcCeeCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            467789999999999999999999999998899999999999964

>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A

Probab=99.81  E-value=1.1e-21  Score=132.38  Aligned_cols=43  Identities=42%  Similarity=0.769  Sum_probs=13.0

Q ss_pred             CCCCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhcc
Q psy14512         28 VNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQ   72 (113)
Q Consensus        28 ~~~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~   72 (113)
                      .++++++||||||||||++||+|||++|+|  +|++|||+|+.|-
T Consensus        18 ~~~~k~~KpCCaCpetK~aRDeCil~~gee--~C~~lIeahk~Cm   60 (67)
T 2l0y_B           18 SQEKRPLKPCCTCPETKKARDACIIEKGEE--HCGHLIEAHKESM   60 (67)
T ss_dssp             -----------------------------C--CSCSSHHHHHHHH
T ss_pred             ccCCCCCCcCeeCcchhhHhHHHHHhcCHH--HHHHHHHHHHHHH
Confidence            345666899999999999999999999999  7999999999995

>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A

Probab=88.64  E-value=0.042  Score=36.50  Aligned_cols=42  Identities=12%  Similarity=0.168  Sum_probs=34.3

Q ss_pred             CCccccccchhhhhccCCcCCCHHHHHHHhhccCcccCCCcc
Q psy14512         40 CPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKVYPGRTL   81 (113)
Q Consensus        40 CpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~~~~~~~~~   81 (113)
                      |...-.+=-.|+-.||-+..+|+.+|++|+.|..+.|-+|++
T Consensus         7 C~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~~~~~~S~   48 (68)
T 1hp8_A            7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSV   48 (68)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSCGGGCH
T ss_pred             hHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHccCCCC
Confidence            444445556799999987789999999999999999977765

>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1

Probab=82.80  E-value=0.38  Score=28.19  Aligned_cols=34  Identities=9%  Similarity=0.137  Sum_probs=26.1

Q ss_pred             CCccccccchhhhhccCCcCCCHHHHHHHhhccC
Q psy14512         40 CPETKKVRDACQREKEDRIGESQPFQEQTLSHQD   73 (113)
Q Consensus        40 CpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~   73 (113)
                      |...-.+=-+|+-.||-+..+|+.+|++++.|-.
T Consensus         3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc~   36 (38)
T 1ei0_A            3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCAA   36 (38)
T ss_dssp             SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHh
Confidence            3334444457999999888899999999999854

>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}

Probab=81.53  E-value=0.53  Score=32.52  Aligned_cols=36  Identities=8%  Similarity=0.101  Sum_probs=29.6

Q ss_pred             CCccccccchhhhhccCCcCCCHHHHHHHhhccCcc
Q psy14512         40 CPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKV   75 (113)
Q Consensus        40 CpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~~~   75 (113)
                      |-++.++==.|+-.|+.+...|..+.++|+.|....
T Consensus        16 C~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~W   51 (85)
T 2lqt_A           16 CLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFW   51 (85)
T ss_dssp             CHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence            556666666899999988889999999999996543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1u97a_	69	a.17.1.2 (A:) Cytochrome C oxidase copper chaperon	5e-07

>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 69

class: All alpha proteins
fold: Cysteine alpha-hairpin motif
superfamily: Cysteine alpha-hairpin motif
family: COX17-like
domain: Cytochrome C oxidase copper chaperone, COX17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (97), Expect = 5e-07
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 19 EAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQ 67
          +  +  E+    E K KPCC C   K+ RD C         + + F E+
Sbjct: 5  DKKQEQENHAECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEK 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1u97a_	69	Cytochrome C oxidase copper chaperone, COX17 {Bake	99.85

>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone, COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cysteine alpha-hairpin motif
superfamily: Cysteine alpha-hairpin motif
family: COX17-like
domain: Cytochrome C oxidase copper chaperone, COX17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=9.6e-23  Score=136.56  Aligned_cols=47  Identities=28%  Similarity=0.477  Sum_probs=42.2

Q ss_pred             CCCCCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhccC
Q psy14512         27 AVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQD   73 (113)
Q Consensus        27 ~~~~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~   73 (113)
                      ..+.+.|+|||||||+||++||+||||+|+++.+|++|||+|++|-.
T Consensus        13 ~~e~~~KpKpCCaCpetK~aRDeCil~~ge~~~~C~~lIeahk~CMr   59 (69)
T d1u97a_          13 HAECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKECMK   59 (69)
T ss_dssp             SSCCCCSCCCCSCCHHHHHHHHHHHHHTCTTSTTSHHHHHHHHHHHH
T ss_pred             cccccCCCCCcccCchhhhHhhHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            33556788999999999999999999999988899999999999963