Psyllid ID: psy1453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHEEEHHHHccccHHHHHHHHHHcHcccccEEEEccccccEEHEHcccccccccHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MELFStmvktpglrrphseKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKrlcsrddckewaqlawgpatiepvmqeaspnsptligdlmqtgvweparraffdvrsdvgsfstmvktpglrrphseKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE
Flexible Loop (DISEMBL)
melfstmvktpglrrphsekeklraeikhnkemtrSILDAQARAKEEHRQRRaenikrreenakkaeivqvvsfkrlcsrdDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFfdvrsdvgsfstmvktpglrrphsekeklraeikhnkemtrSILDAQARAkeehrqrraenikrreenakkaeivqvrraenikrreenakkaeivqviknpaklkrmkkkqlrliekrdtlpivekrkaaaqae
Low Complexity Region (SEG)
MELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAklkrmkkkqlrlIEKRDTLPIVEKRKAAAQAE
Disordered region (IsUnstruct)
******************************************************************EIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPV*********TLIGDLMQTGVWEPARRAFFDVRSDVGSF*****************************************************************************************************************************
Disordered Region (DISOPRED)
********************************************************************VQVVSFKRLCSRDDCKEWAQLAW***********************************F*DVRSDV***************************************************************************************IVQVIKNPAK*******************************
Disordered Region (DISEMBL)
*********************KLRAEIKHNKEMTRSILDAQ***************KRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKT***********KLRAEIKHNKEMTRSILDAQ**************IKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVE*********
Disordered Region (DISPRO)
*ELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEE*RQRRAENIKRREENAKK***VQVR**ENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9H6F5	360	Coiled-coil domain-contai	yes	N/A	0.187	0.136	0.734	2e-12
Q5RB69	360	Coiled-coil domain-contai	yes	N/A	0.187	0.136	0.734	3e-12
Q2TBX7	354	Coiled-coil domain-contai	yes	N/A	0.164	0.121	0.813	2e-11
Q9JJ89	426	Coiled-coil domain-contai	yes	N/A	0.187	0.115	0.714	2e-07
Q5XIB5	341	Coiled-coil domain-contai	yes	N/A	0.187	0.143	0.693	7e-07

>sp|Q9H6F5|CCD86_HUMAN Coiled-coil domain-containing protein 86 OS=Homo sapiens GN=CCDC86 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 44/49 (89%)

Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
           AEN+KRR EN +KAE+VQVI+NPAKLKR KKKQLR IEKRDTL +++K+
Sbjct: 303 AENLKRRLENERKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQKQ 351

Homo sapiens (taxid: 9606)

>sp|Q5RB69|CCD86_PONAB Coiled-coil domain-containing protein 86 OS=Pongo abelii GN=CCDC86 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 44/49 (89%)

Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
           AEN+KRR EN +KAE+VQVI+NPAKLKR KKKQLR IEKRDTL +++K+
Sbjct: 303 AENLKRRLENERKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQKQ 351

Pongo abelii (taxid: 9601)

>sp|Q2TBX7|CCD86_BOVIN Coiled-coil domain-containing protein 86 OS=Bos taurus GN=CCDC86 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 39/43 (90%)

Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTL 249
           AEN++RR EN +KAEIVQVI+NPAKLKR KKKQLR IEKRDTL
Sbjct: 297 AENLRRRLENERKAEIVQVIRNPAKLKRAKKKQLRSIEKRDTL 339

Bos taurus (taxid: 9913)

>sp|Q9JJ89|CCD86_MOUSE Coiled-coil domain-containing protein 86 OS=Mus musculus GN=Ccdc86 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 44/49 (89%)

Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
           AEN++RR EN +KAEIVQVI+NPAKLK+ KKKQLR IEKRDTL +++K+
Sbjct: 369 AENLRRRLENERKAEIVQVIRNPAKLKKAKKKQLRSIEKRDTLALLQKQ 417

Mus musculus (taxid: 10090)

>sp|Q5XIB5|CCD86_RAT Coiled-coil domain-containing protein 86 OS=Rattus norvegicus GN=Ccdc86 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/49 (69%), Positives = 44/49 (89%)

Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
           AEN++RR EN +KAEIVQVI+NPAKLK+ KKKQLR I+KRDTL +++K+
Sbjct: 284 AENLRRRLENERKAEIVQVIRNPAKLKKAKKKQLRSIQKRDTLALLQKQ 332

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
274324044	119	coiled-coil domain-containing protein 86	0.358	0.789	0.495	4e-16
307177079	143	Coiled-coil domain-containing protein 86	0.351	0.643	0.504	8e-16
332025866	152	Coiled-coil domain-containing protein 86	0.347	0.598	0.482	4e-15
322792354	147	hypothetical protein SINV_07612 [Solenop	0.347	0.619	0.482	8e-15
307202441	161	Coiled-coil domain-containing protein 86	0.358	0.583	0.452	4e-14
334332475	391	PREDICTED: coiled-coil domain-containing	0.370	0.248	0.491	2e-12
395544346	374	PREDICTED: coiled-coil domain-containing	0.370	0.259	0.474	4e-12
158284522	146	AGAP004684-PA [Anopheles gambiae str. PE	0.507	0.910	0.359	9e-12
215598680	167	coiled-coil domain containing 86 [Nasoni	0.351	0.550	0.424	5e-11
410930013	268	PREDICTED: uncharacterized protein LOC10	0.297	0.291	0.564	5e-11

>gi|274324044|ref|NP_001162110.1| coiled-coil domain-containing protein 86-like [Acyrthosiphon pisum] gi|193683501|ref|XP_001952462.1| PREDICTED: coiled-coil domain-containing protein 86-like [Acyrthosiphon pisum] gi|239790510|dbj|BAH71812.1| ACYPI009940 [Acyrthosiphon pisum] gi|239791681|dbj|BAH72275.1| ACYPI009940 [Acyrthosiphon pisum]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 75/115 (65%), Gaps = 21/115 (18%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS+M KT GL+     K+KLR +IK  +E++R++++          +R AEN  R+E   
Sbjct: 25  FSSMNKTKGLKLSFERKQKLREDIKKTRELSRALIN----------ERNAENEARKE--- 71

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPI 251
                   RR ENIKRR EN +K+EIVQVIKNPAK+KRM+KK +R IEKRDTL I
Sbjct: 72  --------RRRENIKRRAENQRKSEIVQVIKNPAKIKRMRKKAMRQIEKRDTLNI 118

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177079|gb|EFN66347.1| Coiled-coil domain-containing protein 86 [Camponotus floridanus]

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/113 (50%), Positives = 78/113 (69%), Gaps = 21/113 (18%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS+++KT G+R   ++K+KLR ++K  KE++R I  AQ +A++E +++R           
Sbjct: 50  FSSIIKTRGIRLSLAKKQKLREDLKRVKEISREI-KAQKQAEKEAKKQR----------- 97

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTL 249
                    R EN+KR EEN KK+EIVQVIKNPAK+KRMKKKQLR+IEKRDTL
Sbjct: 98  ---------RRENLKRAEENRKKSEIVQVIKNPAKIKRMKKKQLRMIEKRDTL 141

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025866|gb|EGI66022.1| Coiled-coil domain-containing protein 86 [Acromyrmex echinatior]

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 78/112 (69%), Gaps = 21/112 (18%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS+++KT G+R+  ++K+KLR ++K  KEM+R+I  AQ +A++E +++R           
Sbjct: 59  FSSIIKTRGIRQSFAKKQKLREDLKRVKEMSRAI-KAQKQAEKEAKKQR----------- 106

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDT 248
                    R EN+K+ EEN KK+EIVQ+IKN AK+KRMKKKQLR+IEKRDT
Sbjct: 107 ---------RRENLKKAEENRKKSEIVQIIKNTAKIKRMKKKQLRMIEKRDT 149

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792354|gb|EFZ16338.1| hypothetical protein SINV_07612 [Solenopsis invicta]

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 21/112 (18%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS+++KT G+R   ++K+KLR ++K  K+M+R+I   +   KE  +QRR EN+KR E   
Sbjct: 57  FSSIIKTRGIRLSLAKKQKLREDLKRVKDMSRAIKAQKQEEKEAKKQRRRENLKRTE--- 113

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDT 248
                             EN KK+EIVQVIKN AK+KRMKKKQLR+IEKRDT
Sbjct: 114 ------------------ENRKKSEIVQVIKNTAKIKRMKKKQLRMIEKRDT 147

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202441|gb|EFN81861.1| Coiled-coil domain-containing protein 86 [Harpegnathos saltator]

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 21/115 (18%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS+++KT G+R   ++K+KLR ++K  K+M+R+I   +   KE  +QRR EN+KR E   
Sbjct: 68  FSSIIKTRGIRLSFAKKQKLREDLKRVKQMSRAIKAQKHEEKEAKKQRRRENLKRAE--- 124

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPI 251
                             EN KK+E+VQVI N AK+KRMKKKQLR+IEKRDT  +
Sbjct: 125 ------------------ENRKKSEVVQVITNTAKIKRMKKKQLRMIEKRDTTKV 161

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334332475|ref|XP_001379198.2| PREDICTED: coiled-coil domain-containing protein 86-like [Monodelphis domestica]

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 70/118 (59%), Gaps = 21/118 (17%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS MV+   L+     K K R E K  K+  R +        EE +QR  E+ KRR    
Sbjct: 285 FSQMVQDKPLKTSWERKMKERQERKLAKDFARHL--------EEEKQRCKEDKKRR---- 332

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEK 254
                    RAEN+KRR EN +KAEIVQVI+NPAKLKR KKKQLR IEKRDTL +++K
Sbjct: 333 ---------RAENLKRRLENERKAEIVQVIRNPAKLKRAKKKQLRRIEKRDTLALLQK 381

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395544346|ref|XP_003774072.1| PREDICTED: coiled-coil domain-containing protein 86 [Sarcophilus harrisii]

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 68/118 (57%), Gaps = 21/118 (17%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS MV+   LR     K K R E K  K+  R + + + R KEE ++RRAENI       
Sbjct: 268 FSQMVQDKPLRTSWERKMKERQERKLAKDFARHLEEEKQRCKEEKKKRRAENI------- 320

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEK 254
                         KRR EN +KAEIVQVI+NP KLKR KKKQLR IEKRDTL +++K
Sbjct: 321 --------------KRRLENERKAEIVQVIRNPTKLKRAKKKQLRRIEKRDTLALLQK 364

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|158284522|ref|XP_307264.3| AGAP004684-PA [Anopheles gambiae str. PEST] gi|157021004|gb|EAA03199.3| AGAP004684-PA [Anopheles gambiae str. PEST]

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 83/167 (49%), Gaps = 34/167 (20%)

Query: 81  DDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTM 140
           D   E + L       E     A P+S  + G      +W+  +  F  ++  V      
Sbjct: 7   DHTDEGSSLNCNEDKTENGSDSACPSS--VRGKPKSGRIWKSQKLRFASIKKSVQC---- 60

Query: 141 VKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAE 200
                  +  S++   R EIKH KE++RSI +                  RR EN    +
Sbjct: 61  -------KKSSQQHAFREEIKHIKELSRSIKET-----------------RRREN----D 92

Query: 201 IVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRD 247
           I ++RR EN +RR EN +K+EIVQVIKNPAKLKRM+KKQLR+IE+RD
Sbjct: 93  IKRLRREENKRRRIENERKSEIVQVIKNPAKLKRMRKKQLRMIERRD 139

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215598680|ref|NP_001135928.1| coiled-coil domain containing 86 [Nasonia vitripennis]

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 21/113 (18%)

Query: 137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
           FS++VKT G+R    +K+KLR ++K  KEM+R I   +   K   ++RR EN+KR +EN 
Sbjct: 74  FSSIVKTRGIRTSQDKKQKLREDLKRVKEMSREIKAQKEAEKLAKKERRKENLKREKENQ 133

Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTL 249
           KK+                     E+VQVIK+ AK+K+MKK QLR I KRDT+
Sbjct: 134 KKS---------------------EVVQVIKDTAKIKKMKKNQLRSIVKRDTV 165

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410930013|ref|XP_003978393.1| PREDICTED: uncharacterized protein LOC101062064 [Takifugu rubripes]

 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)

Query: 176 RAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRM 235
           +AK+E    +  +++ +EE AK+ E  + RR EN+KRR EN +KAEIVQVIKN AK+KRM
Sbjct: 177 QAKQEKLLVKQYSLQLKEEKAKQKEDKRKRREENLKRRAENERKAEIVQVIKNTAKIKRM 236

Query: 236 KKKQLRLIEKRDTLPIVE 253
           KKK LR IEKRDTL +++
Sbjct: 237 KKKHLRKIEKRDTLALMQ 254

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
UNIPROTKB|B4DY99	104	CCDC86 "cDNA FLJ51395" [Homo s	0.312	0.788	0.416	6.4e-12
UNIPROTKB|Q9H6F5	360	CCDC86 "Coiled-coil domain-con	0.312	0.227	0.416	8.4e-10
UNIPROTKB|F1RIC1	364	CCDC86 "Uncharacterized protei	0.332	0.239	0.423	1.8e-09
MGI|MGI:1277220	426	Ccdc86 "coiled-coil domain con	0.312	0.192	0.416	2.2e-09
RGD|1359280	341	Ccdc86 "coiled-coil domain con	0.312	0.240	0.404	3.2e-09
UNIPROTKB|E1BUC4	104	CCDC86 "Uncharacterized protei	0.332	0.836	0.365	4.3e-09
UNIPROTKB|Q2TBX7	354	CCDC86 "Coiled-coil domain-con	0.641	0.474	0.315	8.3e-09
TAIR|locus:2046273	707	AT2G18540 "AT2G18540" [Arabido	0.263	0.097	0.383	1.3e-07
CGD|CAL0005957	255	CTA2 [Candida albicans (taxid:	0.259	0.266	0.442	2.2e-07
CGD|CAF0007118	255	TLO4 [Candida albicans (taxid:	0.259	0.266	0.442	2.2e-07

UNIPROTKB|B4DY99 CCDC86 "cDNA FLJ51395" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 35/84 (41%), Positives = 52/84 (61%)

Query:   174 QARAKEEHRQRRAENIKRR--EENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAX 231
             Q + KE   ++ A++  R   EE  ++ +  + RRAEN+KRR EN +KAE+VQVI+NPA 
Sbjct:    12 QRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENERKAEVVQVIRNPAK 71

Query:   232 XXXXXXXXXXXIEKRDTLPIVEKR 255
                        IEKRDTL +++K+
Sbjct:    72 LKRAKKKQLRSIEKRDTLALLQKQ 95

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q9H6F5 CCDC86 "Coiled-coil domain-containing protein 86" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 35/84 (41%), Positives = 52/84 (61%)

Query:   174 QARAKEEHRQRRAENIKRR--EENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAX 231
             Q + KE   ++ A++  R   EE  ++ +  + RRAEN+KRR EN +KAE+VQVI+NPA 
Sbjct:   268 QRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENERKAEVVQVIRNPAK 327

Query:   232 XXXXXXXXXXXIEKRDTLPIVEKR 255
                        IEKRDTL +++K+
Sbjct:   328 LKRAKKKQLRSIEKRDTLALLQKQ 351

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RIC1 CCDC86 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 39/92 (42%), Positives = 54/92 (58%)

Query:   137 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 196
             FS MV+   LR     K K R E K  K+  R + + + R ++E +QRRAEN+KRR EN 
Sbjct:   258 FSQMVQDKPLRTSWQRKMKERQERKLTKDFARHLEEEKERRRQEKKQRRAENLKRRLENE 317

Query:   197 KKAEIVQV-RRAENIKRREENAKKAEIVQVIK 227
             +KAE+VQV R    +KR    AKK ++  + K
Sbjct:   318 RKAEVVQVIRNPAKLKR----AKKKQLRSIEK 345

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1277220 Ccdc86 "coiled-coil domain containing 86" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 35/84 (41%), Positives = 52/84 (61%)

Query:   174 QARAKEEHRQRRAENIKRR--EENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAX 231
             Q + KE   ++ A++  R   EE  ++ +  + RRAEN++RR EN +KAEIVQVI+NPA 
Sbjct:   334 QRKMKERQERKLAKDFARHLEEEKQRRRQEKKERRAENLRRRLENERKAEIVQVIRNPAK 393

Query:   232 XXXXXXXXXXXIEKRDTLPIVEKR 255
                        IEKRDTL +++K+
Sbjct:   394 LKKAKKKQLRSIEKRDTLALLQKQ 417

GO:0005634 "nucleus" evidence=IDA

RGD|1359280 Ccdc86 "coiled-coil domain containing 86" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 34/84 (40%), Positives = 52/84 (61%)

Query:   174 QARAKEEHRQRRAENIKRR--EENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAX 231
             Q + KE   ++ A++  R   EE  ++ +  + RRAEN++RR EN +KAEIVQVI+NPA 
Sbjct:   249 QRKMKERQERKLAKDFARHLEEEKQRRRQEKKERRAENLRRRLENERKAEIVQVIRNPAK 308

Query:   232 XXXXXXXXXXXIEKRDTLPIVEKR 255
                        I+KRDTL +++K+
Sbjct:   309 LKKAKKKQLRSIQKRDTLALLQKQ 332

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

UNIPROTKB|E1BUC4 CCDC86 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 34/93 (36%), Positives = 54/93 (58%)

Query:   174 QARAKEEHRQRRAENIKRREENAKKAEIVQV--RRAENIKRREENAKKAEIVQVIKNPAX 231
             + + KE   ++   ++ ++ + AK+ E  +   RR EN++RR EN +KAEIVQVI+NP  
Sbjct:    12 ERKLKERQEKKLVRDLVQQLQEAKQKEREEKKRRREENLRRRLENERKAEIVQVIRNPMK 71

Query:   232 XXXXXXXXXXXIEKRDTLPIVEKR----KAAAQ 260
                        +EKRDTL +++K     KAAA+
Sbjct:    72 LKRAKKKQLRRVEKRDTLGMLQKAPVRCKAAAE 104

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q2TBX7 CCDC86 "Coiled-coil domain-containing protein 86" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 58/184 (31%), Positives = 86/184 (46%)

Query:    88 QLAWGPATIEPVMQ--EASPNSPTLIGDLMQT-GVWEPARRAFFDVRSDVGSFSTMV-KT 143
             Q A GP   +P+ +    SP SP    +  +     EPAR      + +  S      K 
Sbjct:   162 QKAPGPEPSKPLQELTPRSPGSPRDQHEPSKPPAAGEPAREGPAPKKREGSSAQAPASKK 221

Query:   144 PGLRRPHSEKEKLRA----EIKHNKEMTRSILDAQARA----KEEHRQRR--AENIKRR- 192
             P    P   K K ++    + +  K  ++ + D   R     K + RQ R  A++  R  
Sbjct:   222 PKEEIPVIPKGKPKSGRVWKDRSKKRFSQMVQDKPLRTSWQRKMKDRQERKLAKDFARHL 281

Query:   193 -EENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAXXXXXXXXXXXXIEKRDTLPI 251
              EE  ++ +  + RRAEN++RR EN +KAEIVQVI+NPA            IEKRDTL  
Sbjct:   282 EEEKERRRQEKKKRRAENLRRRLENERKAEIVQVIRNPAKLKRAKKKQLRSIEKRDTLAQ 341

Query:   252 VEKR 255
             ++K+
Sbjct:   342 LQKQ 345

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2046273 AT2G18540 "AT2G18540" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 28/73 (38%), Positives = 40/73 (54%)

Query:   153 KEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA--KKAEIVQ--VRRAE 208
             KE+   E K  +E  R   + +AR +EE R+R  E  KRRE+    K+ E V+  +R  +
Sbjct:   540 KEREEVERKRREEQERKRREEEARKREEERKREEEMAKRREQERQRKEREEVERKIREEQ 599

Query:   209 NIKRREENAKKAE 221
               KR EE AK+ E
Sbjct:   600 ERKREEEMAKRRE 612

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA

CGD|CAL0005957 CTA2 [Candida albicans (taxid:5476)]

 Score = 138 (53.6 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query:   152 EKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIK 211
             EK+K   E+K  +E  R   + +A+ KEE  +++AE  K++EE AKKAE  + ++AE  K
Sbjct:    83 EKKKKLDELKVKEEEARKKREEEAKKKEEEAKKKAEEAKKKEEEAKKAE--EAKKAEEAK 140

Query:   212 RREENAKKAE 221
             + EE AKKAE
Sbjct:   141 KVEEAAKKAE 150

GO:0003674 "molecular_function" evidence=ND

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS;TAS

GO:0005575 "cellular_component" evidence=ND

CGD|CAF0007118 TLO4 [Candida albicans (taxid:5476)]

 Score = 138 (53.6 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query:   152 EKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIK 211
             EK+K   E+K  +E  R   + +A+ KEE  +++AE  K++EE AKKAE  + ++AE  K
Sbjct:    83 EKKKKLDELKVKEEEARKKREEEAKKKEEEAKKKAEEAKKKEEEAKKAE--EAKKAEEAK 140

Query:   212 RREENAKKAE 221
             + EE AKKAE
Sbjct:   141 KVEEAAKKAE 150

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	262
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 12/254 (4%)

Query: 9    KTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEI 68
            K    ++    K+K     K  +            AK+    ++AE  K+ +E  K  E+
Sbjct: 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557

Query: 69   VQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFF 128
             +    K+       +E   +A   A      +EA       + +  +    E A++A  
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617

Query: 129  DVR--SDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRA 186
                  ++       K     +    +EK +AE     E    I  A+   K E  +++A
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677

Query: 187  ENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKR 246
            E  K+ EE+ KKA        E +K+  E AKKAE  ++ K  A+ K+ K ++L+  E+ 
Sbjct: 1678 EEAKKAEEDEKKAA-------EALKKEAEEAKKAE--ELKKKEAEEKK-KAEELKKAEEE 1727

Query: 247  DTLPIVEKRKAAAQ 260
            + +   E +K A +
Sbjct: 1728 NKIKAEEAKKEAEE 1741

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 38.2 bits (88), Expect = 0.004
 Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 7/243 (2%)

Query: 18   SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRL 77
            +E+E+   EI+  +E   +    +  A +    R+A+ +K+ EE  K  E  +    K+ 
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA 1304

Query: 78   CSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSF 137
               D+ K+ A+ A      +   +EA   +        +      A +A  +  +D    
Sbjct: 1305 ---DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361

Query: 138  STMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAK 197
            +        ++    K+K  A  K  +E  ++    +A+ K E  +++A+ +K+     K
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA---DEAKKKAEEDKKKADELKKAAAAKK 1418

Query: 198  KAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKA 257
            KA+  + ++AE  K+ +E  KKAE  +      K     KK     +K +     ++ K 
Sbjct: 1419 KADEAK-KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477

Query: 258  AAQ 260
             A+
Sbjct: 1478 KAE 1480

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG4538|consensus	130		99.97
KOG4538|consensus	130		99.82
PF03879	108	Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is inv	99.67
PF03879	108	Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is inv	99.0

>KOG4538|consensus

Probab=99.97  E-value=1.7e-32  Score=225.68  Aligned_cols=113  Identities=45%  Similarity=0.584  Sum_probs=108.5

Q ss_pred             cccccccccccccccchhcccccCCcccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1453         109 TLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAEN  188 (262)
Q Consensus       109 al~gd~~srgvWk~q~~a~fdvrSdkkSfSsm~KtK~LktSw~~k~~~r~e~k~~k~~~~~i~~~~~~~~~~~k~~~~~~  188 (262)
                      .+.|.|.|+++|++.           +.||.|+++++|++||++||++++|..++++.+.+|+|.+.++..+++++    
T Consensus        17 ip~gkpKs~r~wkt~-----------K~~s~~~k~k~lr~sw~kKm~lr~e~~~vK~~~~~i~ek~~~~rqeKkqR----   81 (130)
T KOG4538|consen   17 IPWGKPKSERPWKTP-----------KKHSEIKKVKTLRSSWDKKMELRAEKDMVKRVQDNIREKQVQERQEKKQR----   81 (130)
T ss_pred             CCCCCCCcCCCccCH-----------HHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            478999999999987           47899999999999999999999999999999999999999999999999    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeecChHHHhhccHHHHhHhhhccchHHHh
Q psy1453         189 IKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVE  253 (262)
Q Consensus       189 ~~~~~~~~~~~~~~~~~r~en~kRr~ENerKseiVQvI~n~aklKrm~KKqlr~i~krdt~~~~~  253 (262)
                                       |.||.+||+|||+||||||||+||||||+|+|||||+|++|||+.|++
T Consensus        82 -----------------rvEn~kRRLeNERkaEvVQvI~npaKLKr~KKkQlRsIekRDt~qv~~  129 (130)
T KOG4538|consen   82 -----------------RVENEKRRLENERKAEVVQVITNPAKLKRTKKKQLRSIEKRDTTQVTK  129 (130)
T ss_pred             -----------------HHHHHHHHHhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhhhHHhc
Confidence                             999999999999999999999999999999999999999999999875

>KOG4538|consensus

Probab=99.82  E-value=5.6e-21  Score=157.79  Aligned_cols=76  Identities=38%  Similarity=0.472  Sum_probs=73.9

Q ss_pred             ccccccccCCCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhccceeeeecccc
Q psy1453           2 ELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRL   77 (262)
Q Consensus         2 ~RfSsi~k~k~Lrtsw~kKm~~r~e~k~vKd~sr~lke~~~~ek~~kr~rR~en~KRr~ENeRKSEIVQvIt~~~~   77 (262)
                      ++||+|+++++|++||++||++++|+.++++++++|+|...++.+++++||.||.+|++||||||||||||+|-+.
T Consensus        32 K~~s~~~k~k~lr~sw~kKm~lr~e~~~vK~~~~~i~ek~~~~rqeKkqRrvEn~kRRLeNERkaEvVQvI~npaK  107 (130)
T KOG4538|consen   32 KKHSEIKKVKTLRSSWDKKMELRAEKDMVKRVQDNIREKQVQERQEKKQRRVENEKRRLENERKAEVVQVITNPAK  107 (130)
T ss_pred             HHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999765

>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit

Probab=99.67  E-value=2.4e-16  Score=128.44  Aligned_cols=102  Identities=24%  Similarity=0.347  Sum_probs=91.3

Q ss_pred             cccccccccccccccchhcccccCCcccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1453         109 TLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAEN  188 (262)
Q Consensus       109 al~gd~~srgvWk~q~~a~fdvrSdkkSfSsm~KtK~LktSw~~k~~~r~e~k~~k~~~~~i~~~~~~~~~~~k~~~~~~  188 (262)
                      ++.|.+.||.+|+++.+          -|+.+..+.++.+||+.+|+.+.+.+.+|+++++|.|+...+.+++.++    
T Consensus         2 ~~~G~~~sGk~WK~~K~----------~f~~~~~~~~~~tSwekr~~~R~~~~~~K~~ekElKeEKe~er~~r~~~----   67 (108)
T PF03879_consen    2 KPKGMRKSGKVWKTPKK----------AFRPKSKKKKKRTSWEKRMEKRLELKAIKEKEKELKEEKEAERQRRIQR----   67 (108)
T ss_pred             CCCCCCCCCCCCCCccc----------cccccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            56799999999999877          5777788899999999999999999999999999999999998888888    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeecChHHHhhccHHHHhH
Q psy1453         189 IKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRL  242 (262)
Q Consensus       189 ~~~~~~~~~~~~~~~~~r~en~kRr~ENerKseiVQvI~n~aklKrm~KKqlr~  242 (262)
                                       ..++..+++||++...+++ +-|+++|.||+++|+|.
T Consensus        68 -----------------~kerr~~keEkeR~E~~a~-km~~kKv~RmkrkekRn  103 (108)
T PF03879_consen   68 -----------------IKERRKRKEEKERYEKMAA-KMHAKKVERMKRKEKRN  103 (108)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence                             8899999999999755555 55999999999999985

In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].

>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit

Probab=99.00  E-value=8.3e-10  Score=90.33  Aligned_cols=72  Identities=21%  Similarity=0.293  Sum_probs=67.0

Q ss_pred             ccccccccCCCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhccceeeee
Q psy1453           2 ELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVS   73 (262)
Q Consensus         2 ~RfSsi~k~k~Lrtsw~kKm~~r~e~k~vKd~sr~lke~~~~ek~~kr~rR~en~KRr~ENeRKSEIVQvIt   73 (262)
                      ..|+.+..+.++.+||+++|+.+.+.+.|++++++|+|+...+.+++.++..++..+++||+|...|++++.
T Consensus        18 ~~f~~~~~~~~~~tSwekr~~~R~~~~~~K~~ekElKeEKe~er~~r~~~~kerr~~keEkeR~E~~a~km~   89 (108)
T PF03879_consen   18 KAFRPKSKKKKKRTSWEKRMEKRLELKAIKEKEKELKEEKEAERQRRIQRIKERRKRKEEKERYEKMAAKMH   89 (108)
T ss_pred             ccccccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            368998889999999999999999999999999999999999999999999999999999999877777653

In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00