Psyllid ID: psy14554

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MTSWEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLGS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHEEcccEEEEEEcccccccccEEEcccccccccEEEEEccccccccHHHHccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEcccccHHcEEHHcHHcccHHHHcEEEcccc
Coil and Loop (DISEMBL)
MTSWEKRIRKTMVSIFSYLYQIAhlgddddepefssampleegdtfffaprslrNLVLVDEmqslspildckvadlgs
Flexible Loop (DISEMBL)
MTSWEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDemqslspildckvadlgs
Low Complexity Region (SEG)
MTSWEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLGS
Disordered region (IsUnstruct)
*******IRKTMVSIFSYLYQIAHLG****************GDTFFFAPRSLRNLVLVDEMQSLSPILDCKV*****
Disordered Region (DISOPRED)
*******IRKTMVSIFSYLYQIAHLGDDDDEPEF******EEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG*
Disordered Region (DISEMBL)
MTSWEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLGS
Disordered Region (DISPRO)
**SWEKRIRKTMVSIFSYLYQIAHLGD*****EFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLGS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSWEKRIRKTMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q1LVE8	1217	Splicing factor 3B subuni	yes	N/A	0.782	0.050	0.803	3e-24
Q5RBI5	1217	Splicing factor 3B subuni	yes	N/A	0.782	0.050	0.819	4e-24
Q921M3	1217	Splicing factor 3B subuni	yes	N/A	0.782	0.050	0.819	4e-24
Q15393	1217	Splicing factor 3B subuni	yes	N/A	0.782	0.050	0.819	4e-24
A0JN52	1217	Splicing factor 3B subuni	yes	N/A	0.782	0.050	0.819	4e-24
Q7RYR4	1209	Pre-mRNA-splicing factor	N/A	N/A	0.756	0.048	0.476	1e-08
Q4WLI5	1225	Pre-mRNA-splicing factor	yes	N/A	0.717	0.045	0.409	1e-06
Q5B1X8	1209	Pre-mRNA-splicing factor	yes	N/A	0.756	0.048	0.412	2e-06
Q52E49	1216	Pre-mRNA-splicing factor	N/A	N/A	0.743	0.047	0.435	2e-06
Q4PGM6	1221	Pre-mRNA-splicing factor	N/A	N/A	0.692	0.044	0.516	7e-06

>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE +SLSPI+ C++ADL 
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Danio rerio (taxid: 7955)

>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Pongo abelii (taxid: 9601)

>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Mus musculus (taxid: 10090)

>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Homo sapiens (taxid: 9606)

>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct: 357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Bos taurus (taxid: 9913)

>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rse-1 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 4/63 (6%)

Query: 18  YLYQIAHLGDDDDEPEFSS----AMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKV 73
           + YQ   LGDDD+E EFSS      P    +  +F PR L NLVLV+ + S++P +DCKV
Sbjct: 372 HFYQFEKLGDDDEELEFSSDDFPTDPTASYNPVYFHPRPLENLVLVESIDSMNPQVDCKV 431

Query: 74  ADL 76
           A+L
Sbjct: 432 ANL 434

Involved in pre-mRNA splicing and cell cycle control.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 10/66 (15%)

Query: 18  YLYQIAHLGDDDDEPEFSS-------AMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILD 70
           + YQ   LGDDD+E EF+S       ++P E     FF PR   NL LV+ + SL+P++D
Sbjct: 369 HFYQFEKLGDDDEETEFNSENFPADLSVPCEP---VFFQPRGAENLNLVETLNSLNPLID 425

Query: 71  CKVADL 76
            K+ +L
Sbjct: 426 SKIVNL 431

Involved in pre-mRNA splicing and cell cycle control.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1 PE=3 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 18  YLYQIAHLGDDDDEPEFSS----AMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKV 73
           + YQ   LGDDD+E EF+S    A P       +F PR   NL LV+ + SL+P++D KV
Sbjct: 369 HFYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPLVDSKV 428

Query: 74  ADL 76
            ++
Sbjct: 429 VNI 431

Involved in pre-mRNA splicing and cell cycle control.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 19  LYQIAHLGDDDDEPEF-SSAMPLEEGDTF---FFAPRSLRNLVLVDEMQSLSPILDCKVA 74
            YQ   LGDDD+E EF SS  P++  + +   +F PR   NL LV+ + S++P++D KVA
Sbjct: 373 FYQFEKLGDDDEELEFFSSDFPVDPKEPYEPVYFYPRPTENLALVESIDSMNPLMDLKVA 432

Query: 75  DL 76
           +L
Sbjct: 433 NL 434

Involved in pre-mRNA splicing and cell cycle control.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RSE1 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 19  LYQIAHLGDDDDEPEFSSAMPLEEGDTF------FFAPRSLRNLVLVDEMQSLSPILDCK 72
           LY    LGDDDD PE+ S    E G          F PR L NLV VDEM SL PILD K
Sbjct: 369 LYSFQKLGDDDDLPEYISTDYDENGAGRRRPQLPTFTPRPLDNLVQVDEMPSLDPILDAK 428

Involved in pre-mRNA splicing and cell cycle control.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
66553024	1217	PREDICTED: splicing factor 3B subunit 3	0.782	0.050	0.885	1e-24
322797581	1217	hypothetical protein SINV_00421 [Solenop	0.782	0.050	0.885	1e-24
340721347	1217	PREDICTED: splicing factor 3B subunit 3-	0.782	0.050	0.885	1e-24
229577321	1216	splicing factor 3b, subunit 3 [Nasonia v	0.782	0.050	0.885	1e-24
332026090	1217	Splicing factor 3B subunit 3 [Acromyrmex	0.782	0.050	0.885	1e-24
91092128	1219	PREDICTED: similar to AGAP005549-PA [Tri	0.782	0.050	0.901	1e-24
383847297	1217	PREDICTED: splicing factor 3B subunit 3-	0.782	0.050	0.885	1e-24
307166104	1201	Splicing factor 3B subunit 3 [Camponotus	0.782	0.050	0.885	1e-24
307205956	1217	Splicing factor 3B subunit 3 [Harpegnath	0.782	0.050	0.885	1e-24
242018509	1218	Splicing factor 3B subunit, putative [Pe	0.782	0.050	0.868	3e-24

>gi|66553024|ref|XP_623333.1| PREDICTED: splicing factor 3B subunit 3 isoform 1 [Apis mellifera] gi|380015815|ref|XP_003691890.1| PREDICTED: splicing factor 3B subunit 3-like [Apis florea]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797581|gb|EFZ19622.1| hypothetical protein SINV_00421 [Solenopsis invicta]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721347|ref|XP_003399083.1| PREDICTED: splicing factor 3B subunit 3-like [Bombus terrestris] gi|350406701|ref|XP_003487854.1| PREDICTED: splicing factor 3B subunit 3-like [Bombus impatiens]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229577321|ref|NP_001153352.1| splicing factor 3b, subunit 3 [Nasonia vitripennis]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026090|gb|EGI66238.1| Splicing factor 3B subunit 3 [Acromyrmex echinatior]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092128|ref|XP_972649.1| PREDICTED: similar to AGAP005549-PA [Tribolium castaneum] gi|270004662|gb|EFA01110.1| hypothetical protein TcasGA2_TC010322 [Tribolium castaneum]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDE EFSSAMPLEEGDTFFFAPRSLRNLVLVDEM+SLSPIL C+VADL 
Sbjct: 357 YLYQIAHLGDDDDELEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMESLSPILSCRVADLA 416

Query: 78  S 78
            
Sbjct: 417 G 417

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847297|ref|XP_003699291.1| PREDICTED: splicing factor 3B subunit 3-like [Megachile rotundata]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166104|gb|EFN60356.1| Splicing factor 3B subunit 3 [Camponotus floridanus]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 341 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 400

Query: 78  S 78
           +
Sbjct: 401 N 401

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205956|gb|EFN84082.1| Splicing factor 3B subunit 3 [Harpegnathos saltator]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR LRNLVLVDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018509|ref|XP_002429717.1| Splicing factor 3B subunit, putative [Pediculus humanus corporis] gi|212514723|gb|EEB16979.1| Splicing factor 3B subunit, putative [Pediculus humanus corporis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query: 18  YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
           YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPR+LRNLV VDEM SLSPI+ C+VADL 
Sbjct: 357 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRALRNLVQVDEMDSLSPIMACQVADLA 416

Query: 78  S 78
           +
Sbjct: 417 N 417

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
RGD|1311636	902	Sf3b3 "splicing factor 3b, sub	0.782	0.067	0.819	4.7e-22
UNIPROTKB|E9PT66	920	Sf3b3 "Protein Sf3b3" [Rattus	0.782	0.066	0.819	4.9e-22
ZFIN|ZDB-GENE-040426-2901	1217	sf3b3 "splicing factor 3b, sub	0.782	0.050	0.803	5.9e-22
UNIPROTKB|A0JN52	1217	SF3B3 "Splicing factor 3B subu	0.782	0.050	0.819	7.5e-22
UNIPROTKB|E2RR33	1217	SF3B3 "Uncharacterized protein	0.782	0.050	0.819	7.5e-22
UNIPROTKB|Q15393	1217	SF3B3 "Splicing factor 3B subu	0.782	0.050	0.819	7.5e-22
MGI|MGI:1289341	1217	Sf3b3 "splicing factor 3b, sub	0.782	0.050	0.819	7.5e-22
UNIPROTKB|F1P529	1228	SF3B3 "Uncharacterized protein	0.782	0.049	0.819	7.6e-22
FB|FBgn0035162	1227	CG13900 [Drosophila melanogast	0.782	0.049	0.786	8.9e-21
WB|WBGene00019323	1220	teg-4 [Caenorhabditis elegans	0.730	0.046	0.517	2.9e-09

RGD|1311636 Sf3b3 "splicing factor 3b, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 4.7e-22, P = 4.7e-22
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct:   137 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 196

Query:    78 S 78
             +
Sbjct:   197 N 197

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|E9PT66 Sf3b3 "Protein Sf3b3" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 4.9e-22, P = 4.9e-22
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct:    60 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 119

Query:    78 S 78
             +
Sbjct:   120 N 120

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-2901 sf3b3 "splicing factor 3b, subunit 3" [Danio rerio (taxid:7955)]

 Score = 269 (99.8 bits), Expect = 5.9e-22, P = 5.9e-22
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE +SLSPI+ C++ADL 
Sbjct:   357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLA 416

Query:    78 S 78
             +
Sbjct:   417 N 417

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|A0JN52 SF3B3 "Splicing factor 3B subunit 3" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct:   357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query:    78 S 78
             +
Sbjct:   417 N 417

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RR33 SF3B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct:   357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query:    78 S 78
             +
Sbjct:   417 N 417

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15393 SF3B3 "Splicing factor 3B subunit 3" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct:   357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query:    78 S 78
             +
Sbjct:   417 N 417

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:1289341 Sf3b3 "splicing factor 3b, subunit 3" [Mus musculus (taxid:10090)]

 Score = 268 (99.4 bits), Expect = 7.5e-22, P = 7.5e-22
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct:   357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLA 416

Query:    78 S 78
             +
Sbjct:   417 N 417

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|F1P529 SF3B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 268 (99.4 bits), Expect = 7.6e-22, P = 7.6e-22
 Identities = 50/61 (81%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDD+EPEFSSAMPLEEGDTFFF PR L+NLVLVDE+ SLSPIL C++ADL 
Sbjct:   357 YLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLA 416

Query:    78 S 78
             +
Sbjct:   417 N 417

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

FB|FBgn0035162 CG13900 [Drosophila melanogaster (taxid:7227)]

 Score = 258 (95.9 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:    18 YLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG 77
             YLYQIAHLGDDDDEPEFSSAMPLEEG+TFFFAPR+L+NLVLVDE+ S +PI+  +VADL 
Sbjct:   357 YLYQIAHLGDDDDEPEFSSAMPLEEGETFFFAPRALKNLVLVDELPSFAPIITSQVADLA 416

Query:    78 S 78
             +
Sbjct:   417 N 417

GO:0003684 "damaged DNA binding" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005686 "U2 snRNP" evidence=ISS;IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00019323 teg-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 150 (57.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query:    19 LYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADL 76
             LYQIA LG+ DD+ EFSSAM   E D  FF P  L++L+ +D M SLSP+ D  + D+
Sbjct:   359 LYQIASLGEGDDD-EFSSAMGFGENDAAFFEPHELKSLIPIDSMDSLSPLTDAVIGDI 415

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15393	SF3B3_HUMAN	No assigned EC number	0.8196	0.7820	0.0501	yes	N/A
A0JN52	SF3B3_BOVIN	No assigned EC number	0.8196	0.7820	0.0501	yes	N/A
Q1LVE8	SF3B3_DANRE	No assigned EC number	0.8032	0.7820	0.0501	yes	N/A
Q921M3	SF3B3_MOUSE	No assigned EC number	0.8196	0.7820	0.0501	yes	N/A
Q5RBI5	SF3B3_PONAB	No assigned EC number	0.8196	0.7820	0.0501	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG1898|consensus	1205		99.7
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	97.14
KOG1897|consensus	1096		94.36

>KOG1898|consensus

Probab=99.70  E-value=5.2e-18  Score=143.99  Aligned_cols=66  Identities=44%  Similarity=0.682  Sum_probs=58.7

Q ss_pred             hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccCC
Q psy14554         11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLGS   78 (78)
Q Consensus        11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~~   78 (78)
                      .+|||||.||||++||+|||+  +++.++.+.+++++|.||.||||+++++++||+|++|++|.|.+|
T Consensus       350 ~sE~~n~~lyq~~~LG~~~~~--~s~~~~~~~~~~~~f~p~~l~nL~~~~~i~sl~p~~d~~I~~~~n  415 (1205)
T KOG1898|consen  350 ASEFGNHRLYQFEKLGEEDDD--FSNAMTSEEGKSVFFEPRILKNLSPVSSVESLSPLLDISIGDDSN  415 (1205)
T ss_pred             hhhccCcceeehhhcCCCccc--hhhhcccccCcceeccccccccccchhhhhccCccceeEeeccCc
Confidence            689999999999999977754  777776655689999999999999999999999999999998764

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=97.14  E-value=0.00019  Score=55.92  Aligned_cols=38  Identities=34%  Similarity=0.339  Sum_probs=27.8

Q ss_pred             hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccC
Q psy14554         11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG   77 (78)
Q Consensus        11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~   77 (78)
                      .|++||+.||||.                             ..+|.++|++.+++||+|+.|.+..
T Consensus       274 gs~~gds~l~~~~-----------------------------~~~l~~~~~~~N~~Pi~D~~v~~~~  311 (504)
T PF10433_consen  274 GSEFGDSQLLQIS-----------------------------LSNLEVLDSLPNWGPIVDFCVVDSS  311 (504)
T ss_dssp             EESSS-EEEEEEE-----------------------------SESEEEEEEE----SEEEEEEE-TS
T ss_pred             EEecCCcEEEEEe-----------------------------CCCcEEEEeccCcCCccceEEeccc
Confidence            5899999999998                             3588899999999999999998753

...

>KOG1897|consensus

Probab=94.36  E-value=0.029  Score=49.22  Aligned_cols=43  Identities=30%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccC
Q psy14554         11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG   77 (78)
Q Consensus        11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~   77 (78)
                      .|+||||   |+.+|+.+.|.   .|                  -+.+++++.+|.||.||+|.|+-
T Consensus       323 GS~~gdS---qLi~L~~e~d~---gs------------------y~~ilet~~NLgPI~Dm~Vvd~d  365 (1096)
T KOG1897|consen  323 GSRFGDS---QLIKLNTEPDV---GS------------------YVVILETFVNLGPIVDMCVVDLD  365 (1096)
T ss_pred             eccCCce---eeEEccccCCC---Cc------------------hhhhhhhcccccceeeEEEEecc
Confidence            4889999   88889965433   22                  12367789999999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.15

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.15  E-value=9.9e-07  Score=74.27  Aligned_cols=44  Identities=23%  Similarity=0.240  Sum_probs=37.5

Q ss_pred             hcccCCceeeeeeecCCCCCCCceecCCCCCCCCeeeeecCCCCCccccccccCCCccccceecccC
Q psy14554         11 TMVSIFSYLYQIAHLGDDDDEPEFSSAMPLEEGDTFFFAPRSLRNLVLVDEMQSLSPILDCKVADLG   77 (78)
Q Consensus        11 ~sefGnh~LYQFe~LGdddd~~~~sS~~~~~~~~~~~F~Pr~L~NL~lvd~l~SLsPI~D~kV~dl~   77 (78)
                      .||+|||+||||+.+|+|++                       ..+.++|++.|++||+|++|.|..
T Consensus       343 gS~~Gds~l~~~~~~~~~~~-----------------------~~~~~~~~~~N~~PI~D~~v~d~~  386 (1158)
T 3ei3_A          343 GSRLGDSQLVKLNVDSNEQG-----------------------SYVVAMETFTNLGPIVDMCVVDLE  386 (1158)
T ss_dssp             ECSSSCEEEEEECSSCCTTS-----------------------CCEEEEEEECCCCSEEEEEEECTT
T ss_pred             EEecCCcEEEEEecCCCCcc-----------------------ceEEeEeeecCcCCceeEEEEccC
Confidence            58999999999999996541                       126789999999999999999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00