Psyllid ID: psy14557

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MSKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSLDEDDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSSLPYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCASLQV
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcEHHHHHHHHHHHHccHccHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEEcccccccHcccccccccccccccccccccEEEEEccccHcccccccHccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHccccccEEccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MSKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHeyespdedeessldeddssfsgkharnnldsehstddtrstnttsttivsnnsslpyltykpnfhfvfdifpgicrtsnqndghkagvliqhplplypitlacdssfsgkharnnldsehstddtrstnttsttivsnnsslinhkgdlistevsdtvvTCGDKAFAELQIKMMDTKQKLKIQDIQVEnfkknkhhtqLTLTEIKrlqpttntyesvgrmfiktphpevVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCASLQV
Flexible Loop (DISEMBL)
mskavdmelkkehmsVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSLDEDDSSFSgkharnnldsehstddtrstnttsttivsnnsslpYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSFSGKHARNNldsehstddtrstnttsttivsnnsslinhkGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVenfkknkhhtqltlteikrlqpttnTYESVGRmfiktphpevvvnLEKKVKSYEEKIkdiesekaiilvPALKIARYLVILIRLNTHCASLQV
Low Complexity Region (SEG)
MSKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYespdedeessldeddssFSGKHARNNLDSEHstddtrstnttsttivsnnssLPYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSFSGKHARNNLDSEHstddtrstnttsttivsnnssLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCASLQV
Disordered region (IsUnstruct)
*************MSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH*****************************************************SLPYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACD*************************************LINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCA****
Disordered Region (DISOPRED)
********LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQV*********************************************************************FDIFPGI***********************PIT**********************************IVSNNS********************C***AFAELQ*****************************TLTEIKRLQPTTNTYESVGRMFIKTPH************************KAIILVPALKIARYLVILIRLNTHCA*LQ*
Disordered Region (DISEMBL)
MSKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH*********************GKHARNN*****************TTIVSNNSSLPYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSFSGKHARN******************TTIVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCASLQV
Disordered Region (DISPRO)
***AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE*****************************************************YLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSF**********************TTSTTIVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHCASL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSLDEDDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSSLPYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQHPLPLYPITLACDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSSLINHKGDLISTEVSDTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVxxxxxxxxxxxxxxxxxxxxxKAIILVPALKIARYLVILIRLNTHCASLQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
O60925	122	Prefoldin subunit 1 OS=Ho	yes	N/A	0.263	0.729	0.494	4e-14
Q5RAM7	122	Prefoldin subunit 1 OS=Po	yes	N/A	0.263	0.729	0.494	7e-14
Q3SZE2	122	Prefoldin subunit 1 OS=Bo	yes	N/A	0.269	0.745	0.472	1e-13
Q9CWM4	122	Prefoldin subunit 1 OS=Mu	yes	N/A	0.260	0.721	0.511	2e-13
Q5D016	122	Prefoldin subunit 1 OS=Da	yes	N/A	0.260	0.721	0.454	2e-13
Q4SPU8	122	Prefoldin subunit 1 OS=Te	N/A	N/A	0.260	0.721	0.420	1e-11
P59808	1230	SAM and SH3 domain-contai	no	N/A	0.295	0.081	0.390	1e-08
A0JN71	380	SAM and SH3 domain-contai	no	N/A	0.171	0.152	0.448	1e-08
Q8K352	380	SAM and SH3 domain-contai	no	N/A	0.153	0.136	0.461	5e-08
O75995	380	SAM and SH3 domain-contai	no	N/A	0.153	0.136	0.461	5e-08

>sp|O60925|PFD1_HUMAN Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct: 11  KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKA 310
                +   L +K K  EEKIK++E +K+
Sbjct: 71  QSKEAIHSQLLEKQKIAEEKIKELEQKKS 99

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Homo sapiens (taxid: 9606)

>sp|Q5RAM7|PFD1_PONAB Prefoldin subunit 1 OS=Pongo abelii GN=PFDN1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 57/89 (64%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct: 11  KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKA 310
                +   L +K K  EEKIK++E +K+
Sbjct: 71  QSKEAIHNQLLEKQKIAEEKIKELEQKKS 99

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Pongo abelii (taxid: 9601)

>sp|Q3SZE2|PFD1_BOVIN Prefoldin subunit 1 OS=Bos taurus GN=PFDN1 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 58/91 (63%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAF ELQ K++DT+QK+K+ D+Q+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct: 11  KAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
                +   L +K K  EEKIK++E +K+ +
Sbjct: 71  QSKEAIHNQLLEKQKIAEEKIKELEQKKSYL 101

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|Q9CWM4|PFD1_MOUSE Prefoldin subunit 1 OS=Mus musculus GN=Pfdn1 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct: 11  KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI- 69

Query: 282 TPHPEVVVN-LEKKVKSYEEKIKDIESEKA 310
               EV+ N L +K K  +EKIK++E +K+
Sbjct: 70  LQSKEVIHNQLLEKQKIAKEKIKELEQKKS 99

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Mus musculus (taxid: 10090)

>sp|Q5D016|PFD1_DANRE Prefoldin subunit 1 OS=Danio rerio GN=pfdn1 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 57/88 (64%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAFAELQ KM+DT+QK+K+ D+Q+E   + K H  LT  EI  L  +T  +E  GRMFI 
Sbjct: 11  KAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFIL 70

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEK 309
               E+   L +K K+ ++KIK++E +K
Sbjct: 71  QSKGEISNQLLEKQKTADDKIKELEQKK 98

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Danio rerio (taxid: 7955)

>sp|Q4SPU8|PFD1_TETNG Prefoldin subunit 1 OS=Tetraodon nigroviridis GN=pfdn1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAF ELQ K++DT+QK ++ D+Q++   K + H +LT TE+  L   T  YE VGRMFI 
Sbjct: 11  KAFTELQAKVIDTQQKARLADLQIDQLTKVQKHARLTQTEMASLPDNTRLYEGVGRMFIL 70

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEK 309
               E+  +L    K+ +EK+K++E +K
Sbjct: 71  RSKEEINNHLTDAQKTADEKVKELEQKK 98

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Tetraodon nigroviridis (taxid: 99883)

>sp|P59808|SASH1_MOUSE SAM and SH3 domain-containing protein 1 OS=Mus musculus GN=Sash1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 68/105 (64%), Gaps = 5/105 (4%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
           KEHM  F+ NGYEDL++F  ++EEDL+ L I +PEHRA +L AV+++ EY+S + D+  S
Sbjct: 641 KEHMPTFLFNGYEDLDTFKLLEEEDLDELNIRDPEHRAVLLTAVELLQEYDS-NSDQSGS 699

Query: 71  LDE---DDSSFSGKHARNNLDSEHSTDDTRSTNTTSTTIVSNNSS 112
            ++   D+   SG+  R++   E S+++  +  T   +++S  SS
Sbjct: 700 QEKLLVDNQGLSGRSPRDSGCYE-SSENLENAKTHKPSVLSTKSS 743

May have a role in a signaling pathway. Could act as a tumor suppressor.

Mus musculus (taxid: 10090)

>sp|A0JN71|SASH3_BOVIN SAM and SH3 domain-containing protein 3 OS=Bos taurus GN=SASH3 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 42/58 (72%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEE 68
           +EH S  +LNGY+ LE F E++E  LN L I++P+HRAK+L A +++ +Y++  E+ E
Sbjct: 267 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYDTGSEEAE 324

May function as a signaling adapter protein in lymphocytes.

Bos taurus (taxid: 9913)

>sp|Q8K352|SASH3_MOUSE SAM and SH3 domain-containing protein 3 OS=Mus musculus GN=Sash3 PE=2 SV=2

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 39/52 (75%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
           +EH S  +LNGY+ LE F E++E  LN L I++P+HRAK+L A +++ +Y++
Sbjct: 267 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYDT 318

May function as a signaling adapter protein in lymphocytes.

Mus musculus (taxid: 10090)

>sp|O75995|SASH3_HUMAN SAM and SH3 domain-containing protein 3 OS=Homo sapiens GN=SASH3 PE=1 SV=2

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 39/52 (75%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
           +EH S  +LNGY+ LE F E++E  LN L I++P+HRAK+L A +++ +Y++
Sbjct: 267 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYDT 318

May function as a signaling adapter protein in lymphocytes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
328724821	946	PREDICTED: hypothetical protein LOC10016	0.201	0.071	0.597	1e-16
91092424	121	PREDICTED: similar to prefoldin subunit	0.242	0.677	0.573	2e-16
321472274	124	hypothetical protein DAPPUDRAFT_100476 [	0.269	0.733	0.516	5e-15
332020613	305	SAM and SH3 domain-containing protein 1	0.210	0.232	0.535	1e-13
225715732	122	Prefoldin subunit 1 [Esox lucius]	0.260	0.721	0.5	2e-13
195112620	982	GI10469 [Drosophila mojavensis] gi|19391	0.227	0.078	0.523	4e-13
332375751	121	unknown [Dendroctonus ponderosae]	0.257	0.719	0.505	4e-13
195453238	1060	GK14247 [Drosophila willistoni] gi|19416	0.224	0.071	0.530	5e-13
195390265	912	GJ23151 [Drosophila virilis] gi|19415187	0.227	0.084	0.523	9e-13
307208916	825	SAM and SH3 domain-containing protein 1	0.192	0.078	0.569	9e-13

>gi|328724821|ref|XP_001951864.2| PREDICTED: hypothetical protein LOC100164446 [Acyrthosiphon pisum]

 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 57/72 (79%), Gaps = 4/72 (5%)

Query: 3   KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
           + + ME   E MSVF +NG+ DL+SFCEI+E DL+Y+ I+ PE RAKILAAVQVMH+Y+S
Sbjct: 742 RTIGME---EQMSVFAMNGFGDLQSFCEIREADLDYMGIMAPEQRAKILAAVQVMHDYQS 798

Query: 63  PDEDEESSLDED 74
           P ED+ SS +E+
Sbjct: 799 P-EDDSSSTEEN 809

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092424|ref|XP_968083.1| PREDICTED: similar to prefoldin subunit 1 [Tribolium castaneum] gi|270004755|gb|EFA01203.1| hypothetical protein TcasGA2_TC010530 [Tribolium castaneum]

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 56/82 (68%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAFAELQ K +DT QKL+I D+Q+E  K+NK H   T  EI  L+  T TYESVGRMF+ 
Sbjct: 10  KAFAELQEKQIDTAQKLRIADLQIETLKRNKQHASFTEREISSLEEGTKTYESVGRMFVM 69

Query: 282 TPHPEVVVNLEKKVKSYEEKIK 303
           TP  +V  NL+KK    EEKIK
Sbjct: 70  TPMTQVKENLQKKQAQAEEKIK 91

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321472274|gb|EFX83244.1| hypothetical protein DAPPUDRAFT_100476 [Daphnia pulex]

 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 60/91 (65%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAFAELQ KM++T QKLK+ D+Q+E  K++  H QLT  EI +L   T TYESVGRMF+ 
Sbjct: 7   KAFAELQQKMVETSQKLKLADLQIETLKRSMTHAQLTDKEISQLPTDTKTYESVGRMFVL 66

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
                   NLE K+K  EEK+K +E  KA +
Sbjct: 67  KEVTVARTNLENKIKGCEEKVKTLEGTKAYL 97

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020613|gb|EGI61021.1| SAM and SH3 domain-containing protein 1 [Acromyrmex echinatior]

 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 53/71 (74%)

Query: 5  VDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPD 64
          +++ L +EH+ VFVLNGYEDLE F E++  DL+YL+I  PEHRAKIL AVQ++H+ +S  
Sbjct: 1  MNVTLAQEHIPVFVLNGYEDLELFRELEAADLDYLRIHQPEHRAKILTAVQLLHDLQSGS 60

Query: 65 EDEESSLDEDD 75
          E + +S  E D
Sbjct: 61 EGDLASSSEGD 71

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225715732|gb|ACO13712.1| Prefoldin subunit 1 [Esox lucius]

 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 57/88 (64%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAFAELQ KM+DT+QK K+ D+Q++   + K H  LT  EIK L   T  YE VGRMFI 
Sbjct: 11  KAFAELQAKMIDTQQKAKLADLQIDQLTRMKKHANLTHAEIKTLPENTRMYEGVGRMFIL 70

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESEK 309
               ++   L +K KS EEKIK++E +K
Sbjct: 71  QSKEDINTQLTEKQKSAEEKIKELEQKK 98

Source: Esox lucius

Species: Esox lucius

Genus: Esox

Family: Esocidae

Order: Esociformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195112620|ref|XP_002000870.1| GI10469 [Drosophila mojavensis] gi|193917464|gb|EDW16331.1| GI10469 [Drosophila mojavensis]

 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 7/84 (8%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
           KE+ SVFVLNGYEDLE F E++  DL+YL ILN EHRAK+L AVQ++H+ E  D D   S
Sbjct: 700 KEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLTAVQLLHDIECSDMDIAGS 759

Query: 71  LDEDDSSFSGKHAR-NNLDSEHST 93
             E+D       AR NN++ +H  
Sbjct: 760 SSEND------EARLNNINKKHGA 777

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375751|gb|AEE63016.1| unknown [Dendroctonus ponderosae]

 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 58/87 (66%)

Query: 222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
           KAF ELQ K ++T+QKLKI  IQ+E+ K++K H Q+T  EI  L  T NTY  VGRMF+ 
Sbjct: 10  KAFVELQEKKIETEQKLKISVIQIESLKRSKQHAQMTEREITALDSTINTYAPVGRMFVL 69

Query: 282 TPHPEVVVNLEKKVKSYEEKIKDIESE 308
           TP   V  N++KK  + E KIK +E +
Sbjct: 70  TPKATVEENIKKKQTTAETKIKTLEGQ 96

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453238|ref|XP_002073700.1| GK14247 [Drosophila willistoni] gi|194169785|gb|EDW84686.1| GK14247 [Drosophila willistoni]

 Score = 81.6 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 5/81 (6%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
           KE+ SVFVLNGYEDLE F E++  DL+YL ILN EHRAK+L AVQ++H+ ES D D   S
Sbjct: 759 KEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLTAVQLLHDIESSDVDIAGS 818

Query: 71  LDEDDSSFSGKHARNNLDSEH 91
             E+D +       NN++ +H
Sbjct: 819 SSENDEA-----RLNNINKKH 834

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195390265|ref|XP_002053789.1| GJ23151 [Drosophila virilis] gi|194151875|gb|EDW67309.1| GJ23151 [Drosophila virilis]

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 7/84 (8%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
           KE+ SVFVLNGYEDLE F E++  DL+YL ILN EHRAK+L AVQ++H+ E  D D   S
Sbjct: 717 KEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLTAVQLLHDIECSDVDIAGS 776

Query: 71  LDEDDSSFSGKHAR-NNLDSEHST 93
             E+D       AR NN++ +H  
Sbjct: 777 SSEND------EARLNNINKKHGA 794

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208916|gb|EFN86127.1| SAM and SH3 domain-containing protein 1 [Harpegnathos saltator]

 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 49/65 (75%)

Query: 11  KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
           +EH+ VFVLNGYEDLE F E++  DL+YL+I  PEHRAKIL AVQ++H+ +S  E + +S
Sbjct: 520 QEHIPVFVLNGYEDLELFRELEAADLDYLRIHQPEHRAKILTAVQLLHDLQSGSEGDLAS 579

Query: 71  LDEDD 75
             E D
Sbjct: 580 SSEGD 584

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
RGD|1305603	122	Pfdn1 "prefoldin subunit 1" [R	0.266	0.737	0.510	4.1e-17
UNIPROTKB|O60925	122	PFDN1 "Prefoldin subunit 1" [H	0.269	0.745	0.483	6.7e-17
UNIPROTKB|E2R297	122	LOC484977 "Uncharacterized pro	0.269	0.745	0.483	8.6e-17
UNIPROTKB|Q3SZE2	122	PFDN1 "Prefoldin subunit 1" [B	0.269	0.745	0.472	1.1e-16
MGI|MGI:1914449	122	Pfdn1 "prefoldin 1" [Mus muscu	0.266	0.737	0.5	1.1e-16
UNIPROTKB|E5RGS4	117	PFDN1 "Prefoldin subunit 1" [H	0.251	0.726	0.505	4.7e-16
UNIPROTKB|I3L723	95	PFDN1 "Uncharacterized protein	0.251	0.894	0.505	6e-16
ZFIN|ZDB-GENE-050306-50	122	pfdn1 "prefoldin subunit 1" [D	0.269	0.745	0.439	1.6e-15
UNIPROTKB|F1NDS5	124	PFDN1 "Uncharacterized protein	0.269	0.733	0.450	5.4e-15
UNIPROTKB|E2RDU3	120	E2RDU3 "Uncharacterized protei	0.269	0.758	0.462	6.9e-15

RGD|1305603 Pfdn1 "prefoldin subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 47/92 (51%), Positives = 61/92 (66%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI- 69

Query:   282 TPHPEVVVN-LEKKVKSYEEKIKDIESEKAII 312
                 EV+ N L +K K  EEKIK++E +K+ +
Sbjct:    70 LQSKEVIHNQLLEKQKIAEEKIKELEQKKSYL 101

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA;ISO

GO:0021549 "cerebellum development" evidence=IEA;ISO

GO:0030036 "actin cytoskeleton organization" evidence=IEA;ISO

GO:0042113 "B cell activation" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|O60925 PFDN1 "Prefoldin subunit 1" [Homo sapiens (taxid:9606)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 44/91 (48%), Positives = 58/91 (63%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query:   282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
                  +   L +K K  EEKIK++E +K+ +
Sbjct:    71 QSKEAIHSQLLEKQKIAEEKIKELEQKKSYL 101

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0007049 "cell cycle" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|E2R297 LOC484977 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 44/91 (48%), Positives = 58/91 (63%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query:   282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
                  +   L +K K  EEKIK++E +K+ +
Sbjct:    71 QSKEVIHSQLLEKQKIAEEKIKELEQKKSYL 101

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q3SZE2 PFDN1 "Prefoldin subunit 1" [Bos taurus (taxid:9913)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 43/91 (47%), Positives = 58/91 (63%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ D+Q+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADVQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query:   282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
                  +   L +K K  EEKIK++E +K+ +
Sbjct:    71 QSKEAIHNQLLEKQKIAEEKIKELEQKKSYL 101

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0042113 "B cell activation" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

MGI|MGI:1914449 Pfdn1 "prefoldin 1" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 46/92 (50%), Positives = 61/92 (66%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFI- 69

Query:   282 TPHPEVVVN-LEKKVKSYEEKIKDIESEKAII 312
                 EV+ N L +K K  +EKIK++E +K+ +
Sbjct:    70 LQSKEVIHNQLLEKQKIAKEKIKELEQKKSYL 101

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0021537 "telencephalon development" evidence=IMP

GO:0021549 "cerebellum development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0042113 "B cell activation" evidence=IMP

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|E5RGS4 PFDN1 "Prefoldin subunit 1" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 43/85 (50%), Positives = 54/85 (63%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query:   282 TPHPEVVVNLEKKVKSYEEKIKDIE 306
                  +   L +K K  EEKIK++E
Sbjct:    71 QSKEAIHSQLLEKQKIAEEKIKELE 95

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|I3L723 PFDN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 43/85 (50%), Positives = 54/85 (63%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ DIQ+E   + K H  LT TEI  L   TN YE VGRMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADIQIEQLNRTKKHAHLTDTEIMTLVDETNMYEGVGRMFIL 70

Query:   282 TPHPEVVVNLEKKVKSYEEKIKDIE 306
                  +   L +K K  EEKIK++E
Sbjct:    71 QSKEAIHNQLLEKQKIAEEKIKELE 95

GO:0042113 "B cell activation" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-050306-50 pfdn1 "prefoldin subunit 1" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 40/91 (43%), Positives = 58/91 (63%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAFAELQ KM+DT+QK+K+ D+Q+E   + K H  LT  EI  L  +T  +E  GRMFI 
Sbjct:    11 KAFAELQAKMVDTQQKVKLADLQIEQLSRVKKHANLTHGEITSLPESTRMFEGAGRMFIL 70

Query:   282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
                 E+   L +K K+ ++KIK++E +K  +
Sbjct:    71 QSKGEISNQLLEKQKTADDKIKELEQKKTYL 101

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|F1NDS5 PFDN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 41/91 (45%), Positives = 56/91 (61%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             +AF ELQ K++DT+QK+K+ D Q+E   K K H  LT TEI  L   T  YE VGRMFI 
Sbjct:    13 QAFTELQAKVIDTQQKVKLADTQIEQLSKTKKHAHLTDTEIMTLVDETRMYEGVGRMFIL 72

Query:   282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAII 312
                  +   L +K +  EEKIK++E +K+ +
Sbjct:    73 QSKGVIHNQLLEKQRIAEEKIKELEQKKSYL 103

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0021537 "telencephalon development" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0030036 "actin cytoskeleton organization" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

UNIPROTKB|E2RDU3 E2RDU3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 43/93 (46%), Positives = 55/93 (59%)

Query:   222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIK 281
             KAF ELQ K++DT+QK+K+ DIQ+E     K H  LT TEI  L   TN YE V RMFI 
Sbjct:    11 KAFTELQAKVIDTQQKVKLADIQIEQLNGMKKHAHLTDTEIMTLVDETNMYEGVRRMFIL 70

Query:   282 TPHPEVVVNLEKKVKSY--EEKIKDIESEKAII 312
                  +    EK  K    EEKIK++E +K+ +
Sbjct:    71 QSKEVIQTRTEKNEKQNIAEEKIKELEQKKSYL 103

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CWM4	PFD1_MOUSE	No assigned EC number	0.5111	0.2603	0.7213	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	338
cd09559	66	cd09559, SAM_SASH1_repeat1, SAM domain of SASH1 pr	1e-11
cd09493	60	cd09493, SAM_SASH-like, SAM (Sterile alpha motif )	1e-11
pfam01920	106	pfam01920, Prefoldin_2, Prefoldin subunit	3e-11
cd09560	68	cd09560, SAM_SASH3, SAM domain of SASH3 subfamily	8e-09
cd09527	63	cd09527, SAM_Samd5, SAM domain of Samd5 subfamily	4e-07
cd09561	66	cd09561, SAM_SAMSN1, SAM domain of SAMSN1 subfamil	8e-07
smart00454	68	smart00454, SAM, Sterile alpha motif	8e-06
cd00632	105	cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin	7e-05
COG1382	119	COG1382, GimC, Prefoldin, chaperonin cofactor [Pos	1e-04
pfam00536	62	pfam00536, SAM_1, SAM domain (Sterile alpha motif)	1e-04
cd09499	67	cd09499, SAM_AIDA1AB-like_repeat1, SAM domain of A	4e-04
cd09549	70	cd09549, SAM_EPH-A10, SAM domain of EPH-A10 subfam	5e-04
cd09491	63	cd09491, SAM_Ship2, SAM domain of Ship2 lipid phos	9e-04
pfam07647	66	pfam07647, SAM_2, SAM domain (Sterile alpha motif)	0.001
cd09497	66	cd09497, SAM_caskin1,2_repeat1, SAM domain of cask	0.002
cd09545	71	cd09545, SAM_EPH-A4, SAM domain of EPH-A4 subfamil	0.003

>gnl|CDD|188958 cd09559, SAM_SASH1_repeat1, SAM domain of SASH1 proteins, repeat 1

 Score = 59.3 bits (143), Expect = 1e-11
 Identities = 28/51 (54%), Positives = 40/51 (78%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61
          KEHM  F+ NGYEDL++F  ++EEDL+ L I +PEHRA +L AV+++ EY+
Sbjct: 16 KEHMPTFLFNGYEDLDTFKLLEEEDLDELNIRDPEHRAVLLTAVELLQEYD 66

SAM (sterile alpha motif) repeat 1 of SASH1 proteins is a predicted protein-protein interaction domain. Members of this subfamily are putative adaptor proteins. They appear to mediate signal transduction. SASH1 can bind 14-3-3 proteins in response to IGF1/phosphatidylinositol 3-kinase signaling. SASH1 was found upregulated in different tissues including thymus, placenta, lungs and downregulated in some breast tumors, liver metastases and colon cancers, relative to corresponding normal tissues. SASH1 is a potential candidate for a tumor suppressor gene in breast cancers. At the same time, downregulation of SASH1 in colon cancer is associated with metastasis and a poor prognosis. Length = 66

>gnl|CDD|188892 cd09493, SAM_SASH-like, SAM (Sterile alpha motif ), SASH1-like

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 25/45 (55%), Positives = 32/45 (71%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
          +EH S  +LNGYE LE F ++KE  LN L I +PEHRAK+L A +
Sbjct: 15 QEHTSTLLLNGYETLEDFKDLKESHLNELNITDPEHRAKLLTAAE 59

SAM (sterile alpha motif) domain of SASH1-like proteins is a protein-protein interaction domain. Members of this subfamily are putative adaptor proteins. They appear to mediate signal transduction. Proteins of this subfamily are known to be involved in preventing DN thymocytes from premature initiation of programmed cell death and in B cells activation and differentiation. They have been found downregulated in some breast tumors, liver metastases and colon cancers if compare to corresponding normal tissues. Length = 60

>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 22/84 (26%), Positives = 44/84 (52%)

Query: 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHP 285
           EL  K    +Q+L++   Q++  +      +L L E++ L   T  Y+ +G + +K    
Sbjct: 2   ELINKFQQLQQQLQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDKE 61

Query: 286 EVVVNLEKKVKSYEEKIKDIESEK 309
           EV   LE++ ++ E++IK +E + 
Sbjct: 62  EVKEELEERKETLEKEIKTLEKQL 85

This family includes prefoldin subunits that are not detected by pfam02996. Length = 106

>gnl|CDD|188959 cd09560, SAM_SASH3, SAM domain of SASH3 subfamily

 Score = 51.2 bits (122), Expect = 8e-09
 Identities = 24/51 (47%), Positives = 38/51 (74%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE 61
          +EH S  +LNGY+ LE F E++E  LN L I++P+HRAK+L A +++ +Y+
Sbjct: 18 EEHTSTLLLNGYQTLEDFKELRETHLNELNIMDPQHRAKLLTAAELLLDYD 68

SAM (sterile alpha motif) domain of SAHS3 (also known as SLY) proteins is a predicted protein-protein interaction domain. Members of this subfamily are putative signaling/adaptor proteins. In addition to SAM, they contain SLY and SH3 domains. They appear to mediate signal transduction in lymphoid tissues. Murine SASH3 is involved in preventing DN thymocytes from premature initiation of programmed cell death and in mTOR (mammalian target of rapamycin) activation via signal integration of the Notch receptor and preTCR (T cell receptor) pathways. Length = 68

>gnl|CDD|188926 cd09527, SAM_Samd5, SAM domain of Samd5 subfamily

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 17 FVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
          FV NGY+DLE   +I + DL+ + ++NP HR +IL AV+ + E
Sbjct: 21 FVDNGYDDLEVCKQIGDPDLDAIGVMNPAHRKRILEAVRRLKE 63

SAM (sterile alpha motif) domain of Samd5 subfamily is a putative protein-protein interaction domain. Proteins of this subfamily have a SAM domain at the N-terminus. SAM is a widespread domain in signaling and regulatory proteins. In many cases SAM mediates dimerization/oligomerization. The exact function of proteins belonging to this subfamily is unknown. Length = 63

>gnl|CDD|188960 cd09561, SAM_SAMSN1, SAM domain of SAMSN1 subfamily

 Score = 45.6 bits (108), Expect = 8e-07
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
          +E+ S  +LNGYE LE   ++KE  L  L I +PE RA++L+A +
Sbjct: 18 QEYTSTLLLNGYETLEDLKDLKESHLIELNITDPEDRARLLSAAE 62

SAM (sterile alpha motif) domain of SAMSN1 (also known as HACS1 or NASH1) proteins is a predicted protein-protein interaction domain. Members of this group are putative signaling/adaptor proteins. They appear to mediate signal transduction in lymphoid tissues. Murine HACS1 protein likely plays a role in B cell activation and differentiation. Potential binding partners of HACS1 are SLAM, DEC205 and PIR-B receptors and also some unidentified tyrosine-phosphorylated proteins. Proteins of this group were found preferentially expressed in normal hematopietic tissues and in some malignancies including lymphoma, myeloid leukemia and myeloma. Length = 66

>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          +++   F  NG +         EEDL  L I    HR KIL A+Q +
Sbjct: 19 EQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKL 65

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation. Length = 68

>gnl|CDD|238345 cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 241 QDIQVENFKKNKHHTQLT-----LTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV 295
           Q +Q    ++ K   QL      L E+++L      Y+ VG + +K    E    L++++
Sbjct: 13  QQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERL 72

Query: 296 KSYEEKIKDIESEKAII 312
           ++ E +IK +E ++  +
Sbjct: 73  ETIELRIKRLERQEEDL 89

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. Length = 105

>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPH 284
           A+LQ ++    QK+ +Q  Q+E   K     +  L E+++L      Y+ VG + +K   
Sbjct: 13  AQLQ-QLQQQLQKVILQKQQLEAQLKE---IEKALEELEKLDEDAPVYKKVGNLLVKVSK 68

Query: 285 PEVVVNLEKKVKSYEEKIKDIESEKAII 312
            E V  LE++ ++ E +IK +E ++  +
Sbjct: 69  EEAVDELEERKETLELRIKTLEKQEEKL 96

Length = 119

>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif)

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
           ++   F   GY D ++   + EEDL  L +  P HR KIL+++Q + 
Sbjct: 16 GQYADNF-RAGYIDGDALLLLTEEDLLKLGVTLPGHRKKILSSIQGLK 62

It has been suggested that SAM is an evolutionarily conserved protein binding domain that is involved in the regulation of numerous developmental processes in diverse eukaryotes. The SAM domain can potentially function as a protein interaction module through its ability to homo- and heterooligomerise with other SAM domains. Length = 62

>gnl|CDD|188898 cd09499, SAM_AIDA1AB-like_repeat1, SAM domain of AIDA1AB-like proteins, repeat 1

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 15 SVFVLNGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQ 55
          S  +LNG++D++      ++++DL  + I + +HR  IL A +
Sbjct: 19 SKLLLNGFDDVDFLGSGVMEDQDLKEIGITDEQHRQIILQAAR 61

SAM (sterile alpha motif) domain repeat 1 of AIDA1AB-like proteins is a protein-protein interaction domain. AIDA1AB-like proteins have two tandem SAM domains. They may form an intramolecular head-to-tail homodimer. One of two basic motifs of the nuclear localization signal (NLS) is located within helix 5 of SAM2 (motif HKRK). This signal plays a role in decoupling of SAM2 from SAM1, thus facilitating translocation of this type proteins into the nucleus. SAM1 domain has a potential phosphorylation site for CMGC group of serine/threonine kinases. SAM domains of the AIDA1-like subfamily can directly bind ubiquitin and participate in regulating the degradation of ubiquitinated EphA receptors, particularly EPH-A8 receptor. Additionally AIDA1AB-like proteins may participate in the regulation of nucleoplasmic coilin protein interactions. Length = 67

>gnl|CDD|188948 cd09549, SAM_EPH-A10, SAM domain of EPH-A10 subfamily of tyrosine kinase receptors

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 4  AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          A+D+   K++   F   GY  LE+   +  +D+  L I + EH+  +LA +Q +
Sbjct: 16 ALDLCRYKDN---FAAAGYGSLEAVARMTAQDVLSLGITSLEHQELLLAGIQAL 66

SAM (sterile alpha motif) domain of EPH-A10 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A10 receptors and appears to mediate cell-cell initiated signal transduction. It was found preferentially expressed in the testis. EphA10 may be involved in the pathogenesis and development of prostate carcinoma and lymphocytic leukemia. It is a potential molecular marker and/or therapy target for these types of cancers. Length = 70

>gnl|CDD|188890 cd09491, SAM_Ship2, SAM domain of Ship2 lipid phosphatase proteins

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 20 NGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQ 55
          NG++ LE   +I EEDL    + NP H+ ++L ++Q
Sbjct: 27 NGWDSLEFLSDITEEDLEEAGVTNPAHKRRLLDSLQ 62

SAM (sterile alpha motif) domain of Ship2 subfamily is a protein-protein interaction domain. Ship2 proteins are lipid phosphatases (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 2) containing an N-terminal SH2 domain, a central phosphatase domain and a C-terminal SAM domain. Ship2 is involved in a number of PI3K signaling pathways. For example, it plays a role in regulation of the actin cytoskeleton remodeling, in insulin signaling pathways, and in EphA2 receptor endocytosis. SAM domain of Ship2 can interact with SAM domain of other proteins in these pathways, thus participating in signal transduction. In particular, SAM of Ship2 is known to form heterodimers with SAM domain of Eph-A2 receptor tyrosine kinase during receptor endocytosis as well as with SAM domain of PI3K effector protein Arap3 in the actin cytoskeleton signaling network. Since Ship2 plays a role in negatively regulating insulin signaling, it has been suggested that inhibition of its expression or function may contribute in treating type 2 diabetes and obesity-induced insulin resistance. Length = 63

>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif)

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
           ++   F   G    E    + EEDL  L I +  HR KIL  +Q +
Sbjct: 19 PQYADNFRDQGITGGELLLRLTEEDLKALGITSVGHRKKILKKIQRL 65

Length = 66

>gnl|CDD|188896 cd09497, SAM_caskin1,2_repeat1, SAM domain of caskin protein repeat 1

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH 58
          E+   F+  GY DL +   +  EDL  + I  P HR K+ + +  + 
Sbjct: 18 EYTPNFIKAGY-DLPTISRMTPEDLTAIGITKPGHRKKLKSEIAQLQ 63

SAM (sterile alpha motif) domain repeat 1 of caskin1,2 proteins is a protein-protein interaction domain. Caskin has two tandem SAM domains. Caskin protein is known to interact with membrane-associated guanylate kinase CASK, and apparently may play a role in neural development, synaptic protein targeting, and regulation of gene expression. Length = 66

>gnl|CDD|188944 cd09545, SAM_EPH-A4, SAM domain of EPH-A4 subfamily of tyrosine kinase receptors

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          +A+ ME  K++   F   GY  LE+   + ++DL  + I    H+ KIL++VQ M
Sbjct: 11 QAIKMERYKDN---FTAAGYTTLEAVVHMNQDDLARIGISAIAHQNKILSSVQGM 62

SAM (sterile alpha motif) domain of EPH-A4 subfamily of receptor tyrosine kinases is a C-terminal potential protein-protein interaction domain. This domain is located in the cytoplasmic region of EPH-A4 receptors and appears to mediate cell-cell initiated signal transduction. SAM domains of EPH-A4 receptors can form homodimers. EPH-A4 receptors bind ligands such as erphirin A1, A4, A5. They are known to interact with a number of different proteins, including meltrin beta metalloprotease, Cdk5, and EFS2alpha, however SAM domain doesn't participate in these interactions. EPH-A4 receptors are involved in regulation of corticospinal tract formation, in pathway controlling voluntary movements, in formation of motor neurons, and in axon guidance (SAM domain is not required for axon guidance or for EPH-A4 kinase signaling). In Xenopus embryos EPH-A4 induces loss of cell adhesion, ventro-lateral protrusions, and severely expanded posterior structures. Mutations in SAM domain conserved tyrosine (Y928F) enhance the ability of EPH-A4 to induce these phenotypes, thus supporting the idea that the SAM domain may negatively regulate some aspects of EPH-A4 activity. EphA4 gene was found overexpressed in a number of different cancers including human gastric cancer, colorectal cancer, and pancreatic ductal adenocarcinoma. It is likely to be a promising molecular target for the cancer therapy. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG3501|consensus	114		99.92
PRK09343	121	prefoldin subunit beta; Provisional	99.88
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	99.85
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	99.81
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.79
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	99.7
KOG4384|consensus	361		99.7
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	99.04
KOG3478|consensus	120		98.96
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	98.95
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	98.86
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	98.82
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	98.71
PRK03947	140	prefoldin subunit alpha; Reviewed	98.61
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	98.03
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	97.94
KOG4098|consensus	140		97.87
PRK14011	144	prefoldin subunit alpha; Provisional	97.87
KOG1760|consensus	131		97.48
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	96.92
KOG0196|consensus	996		96.9
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	96.6
PRK01203	130	prefoldin subunit alpha; Provisional	96.23
PRK11637	428	AmiB activator; Provisional	95.49
PRK03947	140	prefoldin subunit alpha; Reviewed	95.33
PRK09343	121	prefoldin subunit beta; Provisional	95.1
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	95.03
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	94.91
PF09597	57	IGR: IGR protein motif; InterPro: IPR019083 This e	94.84
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	94.48
KOG0507|consensus	854		94.29
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.95
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	93.68
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	93.39
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	93.39
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.87
PRK10884	206	SH3 domain-containing protein; Provisional	92.83
PRK03918	880	chromosome segregation protein; Provisional	92.8
PRK11637	428	AmiB activator; Provisional	92.66
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	92.37
PHA02562	562	46 endonuclease subunit; Provisional	92.16
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.59
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	90.99
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.87
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	90.45
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.17
PHA02562	562	46 endonuclease subunit; Provisional	89.71
PRK01156	895	chromosome segregation protein; Provisional	89.52
KOG0996|consensus	1293		89.51
PRK03918	880	chromosome segregation protein; Provisional	89.51
TIGR02231	525	conserved hypothetical protein. This family consis	89.04
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	88.96
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	88.92
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.76
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.76
PRK09039	343	hypothetical protein; Validated	88.4
PRK10698	222	phage shock protein PspA; Provisional	87.84
PRK02224	880	chromosome segregation protein; Provisional	87.28
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	87.06
PRK02224	880	chromosome segregation protein; Provisional	86.97
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	86.39
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	86.26
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	85.85
KOG0804|consensus	493		85.62
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	84.92
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	84.83
KOG4374|consensus	216		84.56
KOG0995|consensus	581		83.35
KOG0250|consensus	1074		83.34
PRK10884	206	SH3 domain-containing protein; Provisional	83.25
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	82.57
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	82.25
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	82.0
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	81.91
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	81.91
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	80.89
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	80.77
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.37
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	80.35
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	80.02

>KOG3501|consensus

Probab=99.92  E-value=1.6e-24  Score=181.06  Aligned_cols=112  Identities=30%  Similarity=0.417  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHH
Q psy14557        220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYE  299 (338)
Q Consensus       220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslE  299 (338)
                      ++|+|.+||.|.+++||++..++.|+.+++|.++++.+|.+||..+.+++++|+|||||||++|+..+..+|+++.+.++
T Consensus         1 ~~kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~se   80 (114)
T KOG3501|consen    1 MQKAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSE   80 (114)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q psy14557        300 EKIKDIESEKAIILVPALKIARYLVILIRLNT  331 (338)
Q Consensus       300 erIK~LEKQkeyLEKqLeelQ~~LrElLr~~~  331 (338)
                      ++|++|++++.|||+++.+++.+|||++.++.
T Consensus        81 e~IeaLqkkK~YlEk~v~eaE~nLrellqs~~  112 (114)
T KOG3501|consen   81 EKIEALQKKKTYLEKTVSEAEQNLRELLQSRR  112 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999998874

>PRK09343 prefoldin subunit beta; Provisional

Probab=99.88  E-value=5.3e-22  Score=167.93  Aligned_cols=110  Identities=16%  Similarity=0.199  Sum_probs=102.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      +|++++.+.++|.    +|++++.+.+|+++++++++++++|.+||+.||+|++||++||+|||++|+++++++|+++++
T Consensus         6 ~~~~q~~~~~~q~----lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E   81 (121)
T PRK09343          6 PPEVQAQLAQLQQ----LQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKE   81 (121)
T ss_pred             hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHH
Confidence            3455555555555    999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557        297 SYEEKIKDIESEKAIILVPALKIARYLVILIRLN  330 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~  330 (338)
                      .++.+|+.|+++++++++++++++.+|++++++-
T Consensus        82 ~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~  115 (121)
T PRK09343         82 LLELRSRTLEKQEKKLREKLKELQAKINEMLSKY  115 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999763

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=99.85  E-value=1.4e-20  Score=155.87  Aligned_cols=108  Identities=20%  Similarity=0.310  Sum_probs=103.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      ||++++.+.++|.    ++++++.+.+|+..++++++++++|.+||+.||+|++||++||+|||..|+++++.+|+++++
T Consensus         2 ~~~~q~~~~~~q~----~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e   77 (110)
T TIGR02338         2 PPQVQNQLAQLQQ----LQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKE   77 (110)
T ss_pred             CHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHH
Confidence            5677777777766    999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        297 SYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      .++.+|++|+++.++++++++++|++|++++.
T Consensus        78 ~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~  109 (110)
T TIGR02338        78 TLELRVKTLQRQEERLREQLKELQEKIQEALA  109 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999985

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=6.1e-19  Score=150.40  Aligned_cols=111  Identities=19%  Similarity=0.276  Sum_probs=106.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557        216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV  295 (338)
Q Consensus       216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki  295 (338)
                      -||+++..+.++|+    ++++++.+..|+++++.++++++.++.||+.||+|++|||.||..||+.++++++++|+++.
T Consensus         4 lpp~~q~~l~q~Qq----Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~   79 (119)
T COG1382           4 LPPEVQAQLAQLQQ----LQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERK   79 (119)
T ss_pred             CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHH
Confidence            36889999888888    99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557        296 KSYEEKIKDIESEKAIILVPALKIARYLVILIRLN  330 (338)
Q Consensus       296 eslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~  330 (338)
                      +.++.+|++|++|++.+++++++++..|+.+++..
T Consensus        80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~  114 (119)
T COG1382          80 ETLELRIKTLEKQEEKLQERLEELQSEIQKALGDA  114 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999998764

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.79  E-value=6.7e-19  Score=140.93  Aligned_cols=105  Identities=27%  Similarity=0.453  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHH
Q psy14557        225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKD  304 (338)
Q Consensus       225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~  304 (338)
                      ++++.++..+++++..+.+|+.+++++++++++|.+||..+|+++++|++||+|||..|++++++.|+++++.++.+|++
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        305 IESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       305 LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      |+++.+++++++++++.+|++++++
T Consensus        81 l~~~~~~l~~~l~~~~~~l~~~~~~  105 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLYELFGQ  105 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999987654

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=99.70  E-value=2.5e-16  Score=129.27  Aligned_cols=104  Identities=16%  Similarity=0.285  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHH
Q psy14557        225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKD  304 (338)
Q Consensus       225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~  304 (338)
                      +++..+++.++++++.+.+++..++.++++...+.+||..+|+|+++|++||.|||..|++++...|+++++.++.+++.
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~   81 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR   81 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        305 IESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       305 LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      ++++.+++++++++++.+|+++.+
T Consensus        82 l~~~~~~l~~~~~elk~~l~~~~~  105 (105)
T cd00632          82 LERQEEDLQEKLKELQEKIQQAQK  105 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999863

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>KOG4384|consensus

Probab=99.70  E-value=1.1e-17  Score=163.52  Aligned_cols=70  Identities=34%  Similarity=0.512  Sum_probs=65.8

Q ss_pred             ChhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCcccCCc
Q psy14557          1 MSKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS   70 (338)
Q Consensus         1 ~~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~~~~   70 (338)
                      |..+|++|||++|++.||.||||+||+|++|+|+||++|||.||+||+|||.||++|.+++++.+..+..
T Consensus       218 ~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e~d~~~~~~~~~  287 (361)
T KOG4384|consen  218 LEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKEIDSGSEQVGEN  287 (361)
T ss_pred             HHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccccCCC
Confidence            4578999999999999999999999999999999999999999999999999999999999998866633

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=99.04  E-value=1.1e-10  Score=87.00  Aligned_cols=57  Identities=32%  Similarity=0.397  Sum_probs=54.6

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH   58 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~   58 (338)
                      ..+|+++|+.+|.+.|..|||+.++.+..|.++||.++||+++.||+|||.|++.|+
T Consensus        10 ~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk   66 (66)
T PF07647_consen   10 AEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK   66 (66)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999999999999999999999999874

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>KOG3478|consensus

Probab=98.96  E-value=2.2e-08  Score=85.44  Aligned_cols=117  Identities=17%  Similarity=0.207  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY  298 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl  298 (338)
                      .+++.+.+.-.+++.+|..+.......+.++.++.+....++||+-|.+|++|||-+|-.+|+++.++......++++-+
T Consensus         2 ~~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI   81 (120)
T KOG3478|consen    2 ALQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI   81 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q psy14557        299 EEKIKDIESEKAIILVPALKIARYLVILIRLNTHCAS  335 (338)
Q Consensus       299 EerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~a~  335 (338)
                      +.+|+.++++..-+++++.+..+.|-.+-..-+.+|.
T Consensus        82 ~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q~~~~  118 (120)
T KOG3478|consen   82 SKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQPAAP  118 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            9999999999999999999999988777766655543

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=98.95  E-value=6.4e-10  Score=82.50  Aligned_cols=56  Identities=32%  Similarity=0.335  Sum_probs=52.6

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH   58 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~   58 (338)
                      ..+|+.+||++|.+.| .+||.|.+.|..|.++||.++||+++.||.||+.+++.|+
T Consensus         9 ~~WL~~~~l~~y~~~F-~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk   64 (64)
T PF00536_consen    9 SEWLKSLGLEQYAENF-EKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK   64 (64)
T ss_dssp             HHHHHHTTGGGGHHHH-HHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHH-HcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            4689999999999999 9999999999999999999999999999999999999874

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>cd00166 SAM Sterile alpha motif

Probab=98.86  E-value=1.9e-09  Score=77.95  Aligned_cols=56  Identities=32%  Similarity=0.337  Sum_probs=52.8

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH   58 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~   58 (338)
                      ..+|..+|+.+|...|..||| |.+.|..|.++||.++||.+|.||+||+.+++.|.
T Consensus         8 ~~wL~~~~~~~y~~~f~~~~i-~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l~   63 (63)
T cd00166           8 AEWLESLGLGQYADNFRENGI-DGDLLLLLTEEDLKELGITLPGHRKKILKAIQKLK   63 (63)
T ss_pred             HHHHHHcChHHHHHHHHHcCC-CHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            468999999999999999999 99999999999999999999999999999998763

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.82  E-value=6e-08  Score=80.21  Aligned_cols=102  Identities=15%  Similarity=0.262  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------------CCchhhhhhc-ccccc
Q psy14557        226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ-----------------------PTTNTYESVG-RMFIK  281 (338)
Q Consensus       226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP-----------------------eDTkVYKSVG-RMFVl  281 (338)
                      ++..++...+++++.+.+++.++...+.+.+.+..+|..++                       ++.+||..|| ..||.
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve   82 (129)
T cd00890           3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence            44555555666777777777777777777777777777776                       7889999999 99999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      .+.++..+-++++++.++.+++.++++...+++++.+++..|+++.
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~  128 (129)
T cd00890          83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ  128 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999988753

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>smart00454 SAM Sterile alpha motif

Probab=98.71  E-value=1.2e-08  Score=74.24  Aligned_cols=58  Identities=28%  Similarity=0.276  Sum_probs=53.6

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.+|+.+|...|..+||+..+.+...+++||.++||.+|.||.||+.+++.|++
T Consensus        10 ~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~~   67 (68)
T smart00454       10 ADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKD   67 (68)
T ss_pred             HHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999886666999999999999999999999999875

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=98.61  E-value=1.3e-06  Score=74.74  Aligned_cols=109  Identities=14%  Similarity=0.217  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCchhhhhhc---------------------
Q psy14557        221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ---PTTNTYESVG---------------------  276 (338)
Q Consensus       221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP---eDTkVYKSVG---------------------  276 (338)
                      +..+.+++.++...+++++.+.+++..++..+.+...+.+.|+.|+   ++..+|-++|                     
T Consensus         5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~   84 (140)
T PRK03947          5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGA   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCC
Confidence            4456677777777999999999999999999999999999999987   7889999999                     


Q ss_pred             ccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        277 RMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       277 RMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      ..||..+.++.++.|+++++.++..+++++++...+.+++++.+..++++...
T Consensus        85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  137 (140)
T PRK03947         85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE  137 (140)
T ss_pred             CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999987654

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=98.03  E-value=9.7e-05  Score=61.90  Aligned_cols=100  Identities=16%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--chhhhhhcc-cccc--------------------
Q psy14557        225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPT--TNTYESVGR-MFIK--------------------  281 (338)
Q Consensus       225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeD--TkVYKSVGR-MFVl--------------------  281 (338)
                      .+++.++...++++..+.+++..+...+.+.+.+.+.|+.+++.  ..++=++|. +||.                    
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            45666777788888888888888999999999999999999754  556667765 4444                    


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV  324 (338)
Q Consensus       282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr  324 (338)
                      .+.++.++-|+.+++.++..++.|++....+.+++...+..++
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666777777777777777777777666666666666665544

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.94  E-value=0.00019  Score=60.36  Aligned_cols=102  Identities=14%  Similarity=0.210  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----------------------Cchhhhhhcc-cccc
Q psy14557        226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQP-----------------------TTNTYESVGR-MFIK  281 (338)
Q Consensus       226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPe-----------------------DTkVYKSVGR-MFVl  281 (338)
                      +++.++...++++..+.+|+..+...+.+.+.+.+.|+.+++                       ..+++=.||- .||.
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE   82 (129)
T cd00584           3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence            445555556666666666777777777777777777777754                       2344555555 8999


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      .+.++.++-++.+++.++..++.++++...+.++++..+..++++.
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~  128 (129)
T cd00584          83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ  128 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999888753

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG4098|consensus

Probab=97.87  E-value=0.0003  Score=62.04  Aligned_cols=96  Identities=16%  Similarity=0.251  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHH
Q psy14557        227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIE  306 (338)
Q Consensus       227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LE  306 (338)
                      ++.++...+++++.+.+.+..++.++++=.+..+-|..++++-++||.||-.+|..++.+++=.|+..++-++.-|+.|.
T Consensus        20 v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~   99 (140)
T KOG4098|consen   20 VVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEVLPILQTNKENIEKVIKKLT   99 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHHhHHHHhhHHHHHHHHHHHH
Confidence            45667778888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy14557        307 SEKAIILVPALKIARY  322 (338)
Q Consensus       307 KQkeyLEKqLeelQ~~  322 (338)
                      .+.....+.|.+-+..
T Consensus       100 ~qL~~k~kElnkfk~~  115 (140)
T KOG4098|consen  100 DQLVQKGKELNKFKKD  115 (140)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8888888888776554

>PRK14011 prefoldin subunit alpha; Provisional

Probab=97.87  E-value=0.00045  Score=61.08  Aligned_cols=110  Identities=12%  Similarity=0.167  Sum_probs=92.3

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcc-------------------
Q psy14557        217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGR-------------------  277 (338)
Q Consensus       217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGR-------------------  277 (338)
                      ++++++.+.+|+.    .++|++.+..++.+++..+.+..-+.+-|+.++++..+.=++|-                   
T Consensus         2 ~~elq~~~~~l~~----~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIG   77 (144)
T PRK14011          2 NEELQNQFMALEV----YNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVG   77 (144)
T ss_pred             cHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEcc
Confidence            5788888888877    99999999999999999999999999999888766666655554                   


Q ss_pred             --cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557        278 --MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN  330 (338)
Q Consensus       278 --MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~  330 (338)
                        .||..+.++.++-++.+++.++...++|....+.+.+.+.+++..|+..++..
T Consensus        78 tGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~  132 (144)
T PRK14011         78 SDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAI  132 (144)
T ss_pred             CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              38888899999999999999999999999999888888888887777665543

>KOG1760|consensus

Probab=97.48  E-value=0.0017  Score=56.89  Aligned_cols=106  Identities=21%  Similarity=0.286  Sum_probs=83.3

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557        216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV  295 (338)
Q Consensus       216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki  295 (338)
                      .|...-+.|..+-.++-+..+.++..+.|++.++-...++.|..++=..+    + | -||.+|+.-+.+.+.+.|++..
T Consensus        17 EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~I----p-~-~vGdvF~~~~~~~~~~~LEe~k   90 (131)
T KOG1760|consen   17 EDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDI----P-F-KVGDVFIHVKLDKLQDQLEEKK   90 (131)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCcccccc----c-e-ehhhhheeccHHHHHHHHHHHH
Confidence            34566677777777777777777777777777777666666655443222    2 4 5999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        296 KSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       296 eslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      +.++..|..|+.+.+.++.++.++-..|=.-.
T Consensus        91 e~l~k~i~~les~~e~I~~~m~~LK~~LYaKF  122 (131)
T KOG1760|consen   91 ETLEKEIEELESELESISARMDELKKVLYAKF  122 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998877665433

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.023  Score=50.68  Aligned_cols=105  Identities=13%  Similarity=0.207  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCchhhhhhcc---------------------c
Q psy14557        223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL---QPTTNTYESVGR---------------------M  278 (338)
Q Consensus       223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL---PeDTkVYKSVGR---------------------M  278 (338)
                      -+.+|-.+++..++++..+.+++..+...+.+.+-+.+-|+.+   ..+..+-=+||.                     .
T Consensus         7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~   86 (145)
T COG1730           7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGY   86 (145)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCce
Confidence            3444444444488888888888888777766666666555555   322244444443                     4


Q ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        279 FIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       279 FVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      ++..+.++.++-|+++++.++..+++++.....|..++...+..++++-
T Consensus        87 ~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~  135 (145)
T COG1730          87 YAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ  135 (145)
T ss_pred             eeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888899999999999999999999998888888888888887764

>KOG0196|consensus

Probab=96.90  E-value=0.00054  Score=74.59  Aligned_cols=58  Identities=26%  Similarity=0.352  Sum_probs=55.9

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.|+|..|.+.|..+||.+++...+|.-+||..|||+-+.|-+|||..+|.++.
T Consensus       927 ~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~m~~  984 (996)
T KOG0196|consen  927 GDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQAMRA  984 (996)
T ss_pred             HHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999876

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=96.60  E-value=0.0087  Score=49.24  Aligned_cols=62  Identities=23%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             CCchhhhhhcc-cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        267 PTTNTYESVGR-MFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       267 eDTkVYKSVGR-MFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      +..+|+=+||- .||..+.++.++-++.+++.++..++.++++...++.++..++..|+++..
T Consensus        57 ~~~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  119 (120)
T PF02996_consen   57 DTDKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ  119 (120)
T ss_dssp             STTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CCCEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33445555554 588999999999999999999999999999999999999999999887653

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK01203 prefoldin subunit alpha; Provisional

Probab=96.23  E-value=0.12  Score=45.39  Aligned_cols=95  Identities=11%  Similarity=0.254  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCchhhhhhcc---------------------ccccc
Q psy14557        226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ--PTTNTYESVGR---------------------MFIKT  282 (338)
Q Consensus       226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP--eDTkVYKSVGR---------------------MFVlt  282 (338)
                      ++..++.-.++|+..+.+|+++++..+.+..-+.+-|..++  .+..+.=++|-                     .||..
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK   83 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE   83 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence            34455555777888888888888888888888888887763  44444444443                     37777


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        283 PHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIA  320 (338)
Q Consensus       283 dKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ  320 (338)
                      +.++-++.|+++++.++.-+....++.+.++..+.++-
T Consensus        84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666666666666666666666666666665554

>PRK11637 AmiB activator; Provisional

Probab=95.49  E-value=0.38  Score=48.33  Aligned_cols=90  Identities=8%  Similarity=0.147  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS  297 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies  297 (338)
                      .++++.+.+++.++.+.+++++.+..++..++.++...+.-+.++                      ..-+..++.+++.
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~----------------------~~~i~~~~~~i~~  100 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA----------------------SRKLRETQNTLNQ  100 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence            467777777777777777777777777776666655544443333                      3445667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        298 YEEKIKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      ++.+|+.++++.+.+++++++.++.|.+.++.
T Consensus       101 ~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra  132 (428)
T PRK11637        101 LNKQIDELNASIAKLEQQQAAQERLLAAQLDA  132 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777766643

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=95.33  E-value=0.1  Score=44.64  Aligned_cols=105  Identities=13%  Similarity=0.212  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhh---hcccccccCc-----------hHHH---
Q psy14557        226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYES---VGRMFIKTPH-----------PEVV---  288 (338)
Q Consensus       226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKS---VGRMFVltdK-----------deI~---  288 (338)
                      +.+.++...+++++.+..+++.+...+........|+...-+.-+..+.   -+.+||.-..           +.|+   
T Consensus         3 ~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~l   82 (140)
T PRK03947          3 ESEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSL   82 (140)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEc
Confidence            4456777799999999999999999999999999999887544444442   2335555443           2222   


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557        289 -------VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLN  330 (338)
Q Consensus       289 -------eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~  330 (338)
                             ..+++-++.++.+++.|+++.+.|++.+.+.++++.++.+..
T Consensus        83 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  131 (140)
T PRK03947         83 GAGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL  131 (140)
T ss_pred             CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   388999999999999999999999999999999988876543

>PRK09343 prefoldin subunit beta; Provisional

Probab=95.10  E-value=0.23  Score=42.47  Aligned_cols=105  Identities=16%  Similarity=0.116  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q psy14557        226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDI  305 (338)
Q Consensus       226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~L  305 (338)
                      .|+.+++..-.+++.+..+++.+..+++..+....|....-+.-.--.+=.++|-..-+==|..+..+-.+.++++++.+
T Consensus         4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i   83 (121)
T PRK09343          4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL   83 (121)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            57777777888888888888888888888888888877664443333444677877777778888888888888899888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557        306 ESEKAIILVPALKIARYLVILIRLN  330 (338)
Q Consensus       306 EKQkeyLEKqLeelQ~~LrElLr~~  330 (338)
                      +...+.|+++.+.+++.+.++-...
T Consensus        84 e~~ik~lekq~~~l~~~l~e~q~~l  108 (121)
T PRK09343         84 ELRSRTLEKQEKKLREKLKELQAKI  108 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888765544

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=95.03  E-value=0.12  Score=42.50  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTL--TEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTl--kELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      .+...|+.||.++....++++.+.+|+...+..+....+..  ..+-.+-.++=|-+++..+  ....++-++.++.+++
T Consensus         3 ~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea--~~~Le~~~e~le~~i~   80 (105)
T cd00632           3 EQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEA--RTELKERLETIELRIK   80 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHH--HHHHHHHHHHHHHHHH
Confidence            34556666777666677777666666666666666555542  2222222334444444442  3445555666667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        297 SYEEKIKDIESEKAIILVPALKIA  320 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLeelQ  320 (338)
                      .++..++.++++...+++++.+++
T Consensus        81 ~l~~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          81 RLERQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777777777766654

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=94.91  E-value=0.17  Score=42.11  Aligned_cols=99  Identities=12%  Similarity=0.125  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKA  310 (338)
Q Consensus       231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQke  310 (338)
                      +++...+++.+..+++.+..++...+....|....-+.-.--.+=+++|...-.-=|....++-+..++.+++.++...+
T Consensus         5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~   84 (110)
T TIGR02338         5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK   84 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666666666655322222223355666666666666666666666777777776666


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q psy14557        311 IILVPALKIARYLVILIRL  329 (338)
Q Consensus       311 yLEKqLeelQ~~LrElLr~  329 (338)
                      .|+++.+.++.++.++-+.
T Consensus        85 ~lek~~~~l~~~l~e~q~~  103 (110)
T TIGR02338        85 TLQRQEERLREQLKELQEK  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6777666666666665443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif

Probab=94.84  E-value=0.038  Score=42.33  Aligned_cols=52  Identities=21%  Similarity=0.211  Sum_probs=44.7

Q ss_pred             hhhhhhhh--hhhhHhhhhhcCccc-HHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMEL--KKEHMSVFVLNGYED-LESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~--L~ey~s~~l~NGydd-Le~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..||..||  +.+|.+.|     ++ .+.|-...-..|.++|| .|.+|+-||..++..+.
T Consensus         2 ~tFL~~IGR~~~~~~~kf-----~~~w~~lf~~~s~~LK~~GI-p~r~RryiL~~~ek~r~   56 (57)
T PF09597_consen    2 ETFLKLIGRGCEEHAEKF-----ESDWEKLFTTSSKQLKELGI-PVRQRRYILRWREKYRQ   56 (57)
T ss_pred             HHHHHHHcccHHHHHHHH-----HHHHHHHHhcCHHHHHHCCC-CHHHHHHHHHHHHHHhC
Confidence            56899998  99999987     33 67777899999999999 99999999999987653

Its function is unknown.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=94.48  E-value=0.14  Score=42.27  Aligned_cols=97  Identities=14%  Similarity=0.190  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhh-----------------------hhcccccccC-chHHH
Q psy14557        233 DTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYE-----------------------SVGRMFIKTP-HPEVV  288 (338)
Q Consensus       233 eTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYK-----------------------SVGRMFVltd-KdeI~  288 (338)
                      +...+++.+..++..+.+.+....-...|+..+-+.-..+.                       ..++++|.-- ---+.
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve   82 (129)
T cd00890           3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence            35556666666777777777777777777776655555554                       2233333333 11233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      ..+++-.+.++.+++.|+++.+.|++.+.++++++.++...
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~  123 (129)
T cd00890          83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE  123 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666777777777777777777777777766665543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>KOG0507|consensus

Probab=94.29  E-value=0.0098  Score=64.57  Aligned_cols=65  Identities=20%  Similarity=0.159  Sum_probs=58.4

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccH-HHhh--cCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCccc
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDL-ESFC--EIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDE   67 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddL-e~~~--~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~   67 (338)
                      +.++++|+.+|...+..|||+.+ .+++  +|.++++..+||.+|-||+|++.|...++......-+.
T Consensus       302 q~sd~~~~~~~q~~~~~n~~~gy~~sl~sn~i~~qpps~~g~~~~l~~~ks~~a~ss~p~eg~~l~~g  369 (854)
T KOG0507|consen  302 QWSDSIGLPQYQPKLSQNGFDGYPHSLGSNVIEYQPPSIIGILRSLHRQKSLQALSSLPKEGPYLTDG  369 (854)
T ss_pred             cCcccccccccccccccccccccCccccccchhhCCHHHhccCCCCCcchhhhhhhcccccccccccC
Confidence            56789999999999999999999 6666  99999999999999999999999999999876655433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.95  E-value=0.91  Score=49.36  Aligned_cols=103  Identities=11%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCchhhhhhcccccccCchHHHHHHHHH
Q psy14557        224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL---------QPTTNTYESVGRMFIKTPHPEVVVNLEKK  294 (338)
Q Consensus       224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL---------PeDTkVYKSVGRMFVltdKdeI~eeLeEk  294 (338)
                      -.+||.|+..+.++.+.=++.++++|+.+++-+....+|++-         .+....-+++...  ...+.+--+.++.+
T Consensus       469 ne~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~--~~~r~e~~e~~r~r  546 (697)
T PF09726_consen  469 NEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQA--QATRQECAESCRQR  546 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccc--hhccchhHHHHHHH
Confidence            345566666666666666666677777766655554444432         3333444444432  44566777889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        295 VKSYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       295 ieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      ...+|.+++.|+...+-.|.++..++.+++++-.
T Consensus       547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  547 RRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888888865543

; GO: 0016021 integral to membrane

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=93.68  E-value=0.55  Score=39.36  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchH--H-----H----------------
Q psy14557        232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPE--V-----V----------------  288 (338)
Q Consensus       232 ieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKde--I-----~----------------  288 (338)
                      .+.+++++.+..+++.+...+.....+..|+...-+--...+.-....+..|...  .     .                
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            3578889999999999999999999999999887533333322111222222211  1     0                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      ..+++-++.++.+++.|+++.+.|++.+.+.++++..+..
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~  121 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ  121 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999998887654

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=93.39  E-value=0.31  Score=38.90  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY  298 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl  298 (338)
                      ++...|.+++.++....+++..+..++...+..+.+......+-.-.-.=.++|=..-+--+.....+-++.++++++.+
T Consensus         2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l   81 (106)
T PF01920_consen    2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL   81 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888888777772211111244555566667777788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy14557        299 EEKIKDIESEKAIILVPALK  318 (338)
Q Consensus       299 EerIK~LEKQkeyLEKqLee  318 (338)
                      +..++.++++.+.+++.+.+
T Consensus        82 ~~~~~~l~~~l~~~~~~l~~  101 (106)
T PF01920_consen   82 EKQLKYLEKKLKELKKKLYE  101 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887764

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.14  Score=45.76  Aligned_cols=100  Identities=12%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhc---ccccccCchH-----------------
Q psy14557        227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVG---RMFIKTPHPE-----------------  286 (338)
Q Consensus       227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVG---RMFVltdKde-----------------  286 (338)
                      .+..+.++..+++.+..|++.+.+++-....+..|+...-+.-..-++.|   .++|-..-..                 
T Consensus         4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG   83 (145)
T COG1730           4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG   83 (145)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence            35667789999999999999999999999999999999988889999999   5776544322                 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        287 ----VVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVIL  326 (338)
Q Consensus       287 ----I~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrEl  326 (338)
                          +..+.++-++.++.+++.|++..+.++..+.++-..+..+
T Consensus        84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l  127 (145)
T COG1730          84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQL  127 (145)
T ss_pred             CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1223444444555555555554444444444444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.87  E-value=3.1  Score=40.07  Aligned_cols=103  Identities=12%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcc-cccccCc----hHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGR-MFIKTPH----PEVVVNLEK  293 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGR-MFVltdK----deI~eeLeE  293 (338)
                      .+.+.+.+++..+-+...|+......++.....+..++..+   ... .+.+-|+..++ +-+...+    .+-+.+|.+
T Consensus        42 ~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl---~~v-~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~  117 (239)
T COG1579          42 ALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL---SAV-KDERELRALNIEIQIAKERINSLEDELAELME  117 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666555555555444   333 46677887776 3333322    122223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        294 KVKSYEEKIKDIESEKAIILVPALKIARYLVI  325 (338)
Q Consensus       294 kieslEerIK~LEKQkeyLEKqLeelQ~~LrE  325 (338)
                      +.+.++..+..+..+...+++.+.+.+..+.+
T Consensus       118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~  149 (239)
T COG1579         118 EIEKLEKEIEDLKERLERLEKNLAEAEARLEE  149 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444433333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=92.83  E-value=2.8  Score=39.19  Aligned_cols=83  Identities=8%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        217 VTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       217 deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      .|.++-.+-++|+++.++++++..++.+..+...+++..   ..+                      .+..+.+|+++.+
T Consensus        88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~---~~~----------------------~~~~~~~L~~~n~  142 (206)
T PRK10884         88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK---VAQ----------------------SDSVINGLKEENQ  142 (206)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH----------------------HHHHHHHHHHHHH
Confidence            356667777777777777777777776655444333221   111                      2233566888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        297 SYEEKIKDIESEKAIILVPALKIARYLV  324 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLeelQ~~Lr  324 (338)
                      .+.+++..++++...++.++..+++.++
T Consensus       143 ~L~~~l~~~~~~~~~l~~~~~~~~~~~~  170 (206)
T PRK10884        143 KLKNQLIVAQKKVDAANLQLDDKQRTII  170 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888887777654

>PRK03918 chromosome segregation protein; Provisional

Probab=92.80  E-value=2.4  Score=45.62  Aligned_cols=97  Identities=15%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHH
Q psy14557        220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYE  299 (338)
Q Consensus       220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslE  299 (338)
                      +...+.+++.+....+.++..+...+..++..+...+-..++|....+   +.-.||+=....-+.++++++..+++.++
T Consensus       389 l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~---~Cp~c~~~L~~~~~~el~~~~~~ei~~l~  465 (880)
T PRK03918        389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG---KCPVCGRELTEEHRKELLEEYTAELKRIE  465 (880)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCCCCcCCchhHHHHHHHHHHHHHHHH
Confidence            344444555555555666666666666666666676666666665433   44448888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy14557        300 EKIKDIESEKAIILVPALKI  319 (338)
Q Consensus       300 erIK~LEKQkeyLEKqLeel  319 (338)
                      .++..|+++.+.+++.++..
T Consensus       466 ~~~~~l~~~~~~l~~~~~~~  485 (880)
T PRK03918        466 KELKEIEEKERKLRKELREL  485 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888777777666555543

>PRK11637 AmiB activator; Provisional

Probab=92.66  E-value=2.7  Score=42.30  Aligned_cols=44  Identities=9%  Similarity=0.077  Sum_probs=28.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      ...+++++.+..+.++...+.|+.++..++..+.+++.+..++.
T Consensus       168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~  211 (428)
T PRK11637        168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLE  211 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667777777777777777777777766666655555555443

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=92.37  E-value=0.86  Score=38.34  Aligned_cols=97  Identities=15%  Similarity=0.274  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhh----------hcc-cccccCchH-------------HH
Q psy14557        233 DTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYES----------VGR-MFIKTPHPE-------------VV  288 (338)
Q Consensus       233 eTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKS----------VGR-MFVltdKde-------------I~  288 (338)
                      ..+.+++.+..+++.+..++...+....|+..+-+.-..+..          +|. +|+.....+             +.
T Consensus         3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE   82 (129)
T cd00584           3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE   82 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence            467788888889999999999999999999888666666654          222 444443221             23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      ..+.+-++.++.+++.|+++.+.|++.+.++++++..+...
T Consensus        83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~  123 (129)
T cd00584          83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAE  123 (129)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999999999988877654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.16  E-value=1.8  Score=44.02  Aligned_cols=36  Identities=8%  Similarity=0.336  Sum_probs=22.9

Q ss_pred             hhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        273 ESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKA  310 (338)
Q Consensus       273 KSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQke  310 (338)
                      ..||+.|--.  +.....|++.++.++.+++.++....
T Consensus       288 p~C~~~~~~~--~~~~~~l~d~i~~l~~~l~~l~~~i~  323 (562)
T PHA02562        288 PTCTQQISEG--PDRITKIKDKLKELQHSLEKLDTAID  323 (562)
T ss_pred             CCCCCcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467766544  66666666666666666666666665

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.59  E-value=5  Score=37.68  Aligned_cols=100  Identities=10%  Similarity=0.170  Sum_probs=73.5

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHH
Q psy14557        214 DTVVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEK  293 (338)
Q Consensus       214 ~~~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeE  293 (338)
                      ....+.+++...+....-..+|+++.....|++.+..+++....-.+-|+.       |        ..-.+..++.+++
T Consensus        20 a~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-------~--------~~~l~~~v~~q~~   84 (251)
T PF11932_consen   20 AATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV-------Y--------NEQLERQVASQEQ   84 (251)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H--------HHHHHHHHHHHHH
Confidence            345567888888888888889999999999999988888777655555543       2        1234567777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        294 KVKSYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       294 kieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      +++.++.+|+.+++.+..|.--+.+..+.|++.+.
T Consensus        85 el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~  119 (251)
T PF11932_consen   85 ELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE  119 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77788888888887777777777777777776554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=90.99  E-value=11  Score=34.97  Aligned_cols=46  Identities=2%  Similarity=0.057  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR  264 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek  264 (338)
                      -+...+.||+..+.+.++.+..+.++...+++++..++-...+++.
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~   73 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQE   73 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999888877766655543

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.87  E-value=7.7  Score=35.38  Aligned_cols=47  Identities=6%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR  264 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek  264 (338)
                      .-|.+.+.+++..+..+++.+..+.+....+++.+..++-...++..
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~   72 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK   72 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778889999999999999999999999999888887766666554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=90.45  E-value=2  Score=37.47  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhccc------ccccCchHHHHHHHHHHHHHHHHHH
Q psy14557        230 KMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRM------FIKTPHPEVVVNLEKKVKSYEEKIK  303 (338)
Q Consensus       230 KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRM------FVltdKdeI~eeLeEkieslEerIK  303 (338)
                      .++..-.+++.+..|++.+-.+++-++.-++|+.+.      -.-+.+.      |-..---=|....++-++.+++++.
T Consensus         7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~a------l~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E   80 (119)
T COG1382           7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKA------LEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKE   80 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHH
Confidence            344455566666677777777777777776665543      2223332      2222222234455666677777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        304 DIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       304 ~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      .|+.+.+.|+++-+.+++.|.++-..
T Consensus        81 ~Le~ri~tLekQe~~l~e~l~eLq~~  106 (119)
T COG1382          81 TLELRIKTLEKQEEKLQERLEELQSE  106 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777665443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.17  E-value=3.9  Score=39.42  Aligned_cols=29  Identities=17%  Similarity=0.369  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        234 TKQKLKIQDIQVENFKKNKHHTQLTLTEI  262 (338)
Q Consensus       234 TQQQLq~V~~QiqqlErelR~aeLTlkEL  262 (338)
                      ....+..+...+..++.+....+....++
T Consensus        43 ~~~~~~~~~~e~e~le~qv~~~e~ei~~~   71 (239)
T COG1579          43 LNKALEALEIELEDLENQVSQLESEIQEI   71 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.71  E-value=3.5  Score=41.97  Aligned_cols=45  Identities=9%  Similarity=0.183  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557        221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL  265 (338)
Q Consensus       221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL  265 (338)
                      -..+..+..+..+.+.+++.++.++..++..+++..-..+++..+
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el  342 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLEL  342 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555666666666666666665555554444444444443

>PRK01156 chromosome segregation protein; Provisional

Probab=89.52  E-value=8.6  Score=42.02  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHH
Q psy14557        222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEK  301 (338)
Q Consensus       222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEer  301 (338)
                      +.+.+++.++.+++..+..+.+++..++..+.....+..+|+ .-   ++=-.||+-.=..-+.++++++.++++.++.+
T Consensus       409 ~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~~---~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~  484 (895)
T PRK01156        409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-GQ---SVCPVCGTTLGEEKSNHIINHYNEKKSRLEEK  484 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC---CCCCCCCCcCChhhHHHHHHHHHHHHHHHHHH
Confidence            344666666777777777777777777777777776666666 21   23333454433444667777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        302 IKDIESEKAIILVPALKIARYLVI  325 (338)
Q Consensus       302 IK~LEKQkeyLEKqLeelQ~~LrE  325 (338)
                      ++.|+++...+.+.++.+...+..
T Consensus       485 i~~l~~~~~~l~~~~~~~~~~~~~  508 (895)
T PRK01156        485 IREIEIEVKDIDEKIVDLKKRKEY  508 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777776666666655444443

>KOG0996|consensus

Probab=89.51  E-value=5  Score=46.24  Aligned_cols=51  Identities=16%  Similarity=0.268  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTT  269 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDT  269 (338)
                      .+++.|+++..+-...+++++.+.+++..++.++..+.....|+.+.|++.
T Consensus       388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~  438 (1293)
T KOG0996|consen  388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA  438 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence            566777788888888889999999999999999999999999999998754

>PRK03918 chromosome segregation protein; Provisional

Probab=89.51  E-value=5.2  Score=43.13  Aligned_cols=27  Identities=7%  Similarity=0.128  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQ  244 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~Q  244 (338)
                      .++.+.+.+++.++..+.+++..+..+
T Consensus       203 ~~l~~ei~~l~~e~~~l~~~~~~~~~~  229 (880)
T PRK03918        203 EEVLREINEISSELPELREELEKLEKE  229 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555544444433

>TIGR02231 conserved hypothetical protein

Probab=89.04  E-value=4.9  Score=41.47  Aligned_cols=46  Identities=7%  Similarity=-0.071  Sum_probs=35.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      ..++..-+.++...+..++..++.+.+.+++++++++++|..+...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~  174 (525)
T TIGR02231       129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTG  174 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            3455566677778888888888888888888888888888877653

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=88.96  E-value=2  Score=33.00  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      +++|+.++..++..+.+++++-+.|.+.++++.+.++.+|.
T Consensus         2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~   42 (55)
T PF05377_consen    2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS   42 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999885

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=88.92  E-value=11  Score=40.56  Aligned_cols=109  Identities=12%  Similarity=0.162  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhhhhhcccc-cccCchHHHHHHHHHHHH
Q psy14557        220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL-QPTTNTYESVGRMF-IKTPHPEVVVNLEKKVKS  297 (338)
Q Consensus       220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL-PeDTkVYKSVGRMF-VltdKdeI~eeLeEkies  297 (338)
                      -++.+.+||.++.++..++..+..++..+...++.+.-...+...- ..-..-|+--.|++ ++.+.+.-+..|+.-++.
T Consensus       326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~  405 (594)
T PF05667_consen  326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEA  405 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            3455555555555555555555555444444443332222222111 11123455555543 566778888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        298 YEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      ...++..|..|=+.....+.+.-+.|++...
T Consensus       406 s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~  436 (594)
T PF05667_consen  406 SEQRLVELAQQWEKHRAPLIEEYRRLKEKAS  436 (594)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            9999999999888877777666666665443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=88.76  E-value=10  Score=37.22  Aligned_cols=11  Identities=18%  Similarity=0.250  Sum_probs=5.5

Q ss_pred             eecCccccccc
Q psy14557        194 VSNNSSLINHK  204 (338)
Q Consensus       194 ~s~~~~~~~~~  204 (338)
                      ..+||.|++-+
T Consensus        99 ~~~nPpLf~EY  109 (325)
T PF08317_consen   99 YESNPPLFREY  109 (325)
T ss_pred             hhcCCHHHHHH
Confidence            44555555443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.76  E-value=9.3  Score=33.91  Aligned_cols=38  Identities=11%  Similarity=0.229  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQ  256 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~ae  256 (338)
                      +.++.+.+++.++.+.++.+.....+...++.......
T Consensus        85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            44444445555555544444444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK09039 hypothetical protein; Validated

Probab=88.40  E-value=11  Score=37.51  Aligned_cols=45  Identities=4%  Similarity=0.045  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIK  263 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELe  263 (338)
                      .+.+.+.+....+.+.+.++..+.+||++++.++..++-.+.+++
T Consensus       120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae  164 (343)
T PRK09039        120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASE  164 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777777777778888888888777554444444443

>PRK10698 phage shock protein PspA; Provisional

Probab=87.84  E-value=22  Score=33.36  Aligned_cols=46  Identities=4%  Similarity=0.055  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR  264 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek  264 (338)
                      -+...++||+..+.++.+.+..+.++...+++++..++-...+...
T Consensus        28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~   73 (222)
T PRK10698         28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQE   73 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999888888877766655543

>PRK02224 chromosome segregation protein; Provisional

Probab=87.28  E-value=13  Score=40.35  Aligned_cols=15  Identities=20%  Similarity=0.299  Sum_probs=9.0

Q ss_pred             CChHHHHHHHHHHhh
Q psy14557         42 LNPEHRAKILAAVQV   56 (338)
Q Consensus        42 ~dp~hR~rlL~Av~~   56 (338)
                      .|-.=+.=||.|+-.
T Consensus        31 ~Ng~GKStil~ai~~   45 (880)
T PRK02224         31 VNGSGKSSLLEACFF   45 (880)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            344556667777665

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.06  E-value=14  Score=36.22  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        287 VVVNLEKKVKSYEEKIKDIESEKAII  312 (338)
Q Consensus       287 I~eeLeEkieslEerIK~LEKQkeyL  312 (338)
                      |++.++++.+.++..-..++++.+.|
T Consensus       149 ile~qk~dk~~Le~kq~~l~~~~e~l  174 (265)
T COG3883         149 ILEQQKEDKKSLEEKQAALEDKLETL  174 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444443

>PRK02224 chromosome segregation protein; Provisional

Probab=86.97  E-value=8.2  Score=41.87  Aligned_cols=86  Identities=13%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        232 MDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAI  311 (338)
Q Consensus       232 ieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkey  311 (338)
                      .+++.++..+...+..++..++..+..++++..+=.+..+ --||+-|=..+..++++++.+.++.+..+++.|+.+.+.
T Consensus       415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~C-p~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~  493 (880)
T PRK02224        415 EELREERDELREREAELEATLRTARERVEEAEALLEAGKC-PECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEE  493 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444455555555555555532123333 348887777777777777777777777777777766666


Q ss_pred             HHHHHHH
Q psy14557        312 ILVPALK  318 (338)
Q Consensus       312 LEKqLee  318 (338)
                      +++.++.
T Consensus       494 ~~~~~e~  500 (880)
T PRK02224        494 VEERLER  500 (880)
T ss_pred             HHHHHHH
Confidence            5555543

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=86.39  E-value=28  Score=33.15  Aligned_cols=46  Identities=9%  Similarity=0.197  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR  264 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek  264 (338)
                      -|.+.+.+++..+.+..+.+..+.....++++++..++.-.+++..
T Consensus        28 ~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~   73 (225)
T COG1842          28 MLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE   73 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778888999999999999999999999999999888877776654

>smart00502 BBC B-Box C-terminal domain

Probab=86.26  E-value=15  Score=29.25  Aligned_cols=71  Identities=14%  Similarity=0.228  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKS  297 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkies  297 (338)
                      ++|.+.+.++..+.......+..+...+..++.+...+.   .++..      .|. -=+.|+..-+..++.+|++..+.
T Consensus         3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~I~~------~f~-~l~~~L~~~e~~ll~~l~~~~~~   72 (127)
T smart00502        3 EALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVE---AQIKA------AFD-ELRNALNKRKKQLLEDLEEQKEN   72 (127)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777777777777777777777666666654433322   22211      111 11345666777777777765543


Q ss_pred             H
Q psy14557        298 Y  298 (338)
Q Consensus       298 l  298 (338)
                      .
T Consensus        73 ~   73 (127)
T smart00502       73 K   73 (127)
T ss_pred             H
Confidence            3

Coiled coil region C-terminal to (some) B-Box domains

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=85.85  E-value=15  Score=40.21  Aligned_cols=7  Identities=14%  Similarity=0.064  Sum_probs=2.7

Q ss_pred             hHHHHHH
Q psy14557         44 PEHRAKI   50 (338)
Q Consensus        44 p~hR~rl   50 (338)
                      |....-|
T Consensus       535 ~~y~~Ai  541 (1164)
T TIGR02169       535 ERYATAI  541 (1164)
T ss_pred             HHHHHHH
Confidence            4443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0804|consensus

Probab=85.62  E-value=15  Score=38.81  Aligned_cols=12  Identities=42%  Similarity=0.725  Sum_probs=7.7

Q ss_pred             CCCCCCCCCCccc
Q psy14557         76 SSFSGKHARNNLD   88 (338)
Q Consensus        76 ~~~~~~~~~~~~~   88 (338)
                      ..|+|| +=|.|+
T Consensus       133 ~efNGk-~Fn~le  144 (493)
T KOG0804|consen  133 EEFNGK-QFNSLE  144 (493)
T ss_pred             HHcCCC-cCCCCC
Confidence            567888 566653

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=84.92  E-value=21  Score=39.26  Aligned_cols=32  Identities=6%  Similarity=0.167  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKN  251 (338)
Q Consensus       220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlEre  251 (338)
                      +.+.+.+++.++...+.++..+..++..++.+
T Consensus       796 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~  827 (1164)
T TIGR02169       796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLE  827 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555544444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.83  E-value=22  Score=31.30  Aligned_cols=39  Identities=8%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKR  264 (338)
Q Consensus       226 ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELek  264 (338)
                      ++...+..++.+++.+..++..++..+..+.-.+.+-.+
T Consensus        32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~   70 (143)
T PF12718_consen   32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK   70 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            344444455555555555555555555555555554444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4374|consensus

Probab=84.56  E-value=0.65  Score=44.12  Aligned_cols=58  Identities=21%  Similarity=0.191  Sum_probs=48.1

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      .++|..+||.+|...|.+.= .|.+.+..|.|+||-.+||+--.-|.||+.|...+++.
T Consensus       155 l~~L~~lglg~y~~~f~~~e-vd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~~  212 (216)
T KOG4374|consen  155 LMELGILGLGAYWKMFEAIE-VDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRRS  212 (216)
T ss_pred             HHHHHHHhHHHHHHHHHHHH-HHHHHHHhcccchhhhhcccccCcchhhhhhhhccccc
Confidence            46788899999998887764 35566778999999999999999999999999888764

>KOG0995|consensus

Probab=83.35  E-value=9.2  Score=41.11  Aligned_cols=97  Identities=15%  Similarity=0.192  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccc--cccCchHHHHHHHHHHHHH
Q psy14557        221 DKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMF--IKTPHPEVVVNLEKKVKSY  298 (338)
Q Consensus       221 qKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMF--VltdKdeI~eeLeEkiesl  298 (338)
                      .+.|.-+-.++...+.+...+..|++.++..-.+.+.+.+.-..|.+|...|++.=.-+  .....+..++.|++.++.-
T Consensus       227 ~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k  306 (581)
T KOG0995|consen  227 EKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK  306 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            34444455567778888888889999888888899999999999999999998754432  2334667778888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy14557        299 EEKIKDIESEKAIILVPAL  317 (338)
Q Consensus       299 EerIK~LEKQkeyLEKqLe  317 (338)
                      ++++++|+++...|.++++
T Consensus       307 EeE~e~lq~~~d~Lk~~Ie  325 (581)
T KOG0995|consen  307 EEEIEKLQKENDELKKQIE  325 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888888888888777665

>KOG0250|consensus

Probab=83.34  E-value=26  Score=40.28  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=27.1

Q ss_pred             CCCCCCCCCCcceeEeeccccccccccCCCCCcccceeec
Q psy14557        110 NSSLPYLTYKPNFHFVFDIFPGICRTSNQNDGHKAGVLIQ  149 (338)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (338)
                      .|++|+.-|.+.-.=.|. ||.|.+.---.|.--.-|||-
T Consensus       554 vs~~~~~~y~~~~~p~~~-~pTil~~le~ddp~V~N~LID  592 (1074)
T KOG0250|consen  554 VSSFTPFDYSVGRNPGYE-FPTILDALEFDDPEVLNVLID  592 (1074)
T ss_pred             EecCCccccccccCCCCC-CCceeeeeecCChHHHHHhhh
Confidence            688888888877766676 888877765555544455553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.25  E-value=14  Score=34.74  Aligned_cols=28  Identities=7%  Similarity=0.056  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQV  245 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~Qi  245 (338)
                      |++++.+.+++.++.++.++.+...+++
T Consensus        96 p~le~el~~l~~~l~~~~~~~~~~~~~l  123 (206)
T PRK10884         96 PDLENQVKTLTDKLNNIDNTWNQRTAEM  123 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            5666666666666666666655433333

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=82.57  E-value=16  Score=35.11  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhh-------h---hhcccccc------cCchHHH
Q psy14557        225 AELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTY-------E---SVGRMFIK------TPHPEVV  288 (338)
Q Consensus       225 ~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVY-------K---SVGRMFVl------tdKdeI~  288 (338)
                      .++|.++..+.+++.....-++.||.++-.++-....-...+++..+-       .   ..|+.==.      .+-..|+
T Consensus         2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL   81 (248)
T PF08172_consen    2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL   81 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence            567777777777777777777788888777775533333333322221       1   11221111      3566777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      .=+..+.+.+..|...||.+......++..++.++..+-
T Consensus        82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~  120 (248)
T PF08172_consen   82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLR  120 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777666543

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>TIGR00606 rad50 rad50

Probab=82.25  E-value=14  Score=42.68  Aligned_cols=38  Identities=5%  Similarity=0.078  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHT  255 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~a  255 (338)
                      |++++.+.++..++.+...++..+...+..+..++..+
T Consensus       747 p~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~  784 (1311)
T TIGR00606       747 PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA  784 (1311)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            56677777777766666666666666666555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=82.00  E-value=22  Score=37.88  Aligned_cols=83  Identities=13%  Similarity=0.224  Sum_probs=57.6

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557        216 VVTCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV  295 (338)
Q Consensus       216 ~deELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki  295 (338)
                      ...++.+.+.+++.++.+.+.++..+..++..++.++..++-.+.++..      -++.-|..+...     .++|+.++
T Consensus       203 ~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~------~~~~~GG~~~~~-----r~~Le~ei  271 (650)
T TIGR03185       203 LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK------KFRSEGGDLFEE-----REQLERQL  271 (650)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchHHHH-----HHHHHHHH
Confidence            4457888889999999999999999999999999998888877777765      355556543322     34555555


Q ss_pred             HHHHHHHHHHHHHH
Q psy14557        296 KSYEEKIKDIESEK  309 (338)
Q Consensus       296 eslEerIK~LEKQk  309 (338)
                      +.++.+.+..+++.
T Consensus       272 ~~le~e~~e~~~~l  285 (650)
T TIGR03185       272 KEIEAARKANRAQL  285 (650)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=81.91  E-value=17  Score=32.68  Aligned_cols=37  Identities=11%  Similarity=0.188  Sum_probs=19.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR  321 (338)
Q Consensus       285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~  321 (338)
                      .+-.+.++++++.++.++++.++..+.|.+|.+.+++
T Consensus       153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~  189 (192)
T PF05529_consen  153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK  189 (192)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344445555555555555555555555555555554

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.91  E-value=42  Score=33.00  Aligned_cols=34  Identities=15%  Similarity=0.100  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLVI  325 (338)
Q Consensus       292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~LrE  325 (338)
                      +.-++..+.+-+.|+.++..++++++++.....+
T Consensus       147 k~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e  180 (265)
T COG3883         147 KKILEQQKEDKKSLEEKQAALEDKLETLVALQNE  180 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666666666555443

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=80.89  E-value=44  Score=30.39  Aligned_cols=94  Identities=12%  Similarity=0.229  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHH------HHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVV------VNL  291 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~------eeL  291 (338)
                      +..++.+..++..+.++..++..+..+...++..-+.+..-+.|++.=             |-.=+.++|+      .++
T Consensus        23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~-------------f~~ysE~dik~AYe~A~~l   89 (159)
T PF05384_consen   23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN-------------FDRYSEEDIKEAYEEAHEL   89 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hcccCHHHHHHHHHHHHHH
Confidence            577888899999999999999999999999999999998888777642             2222222322      344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        292 EKKVKSYEEKIKDIESEKAIILVPALKIARYLV  324 (338)
Q Consensus       292 eEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr  324 (338)
                      .-+...+.++.+.|..++..|+.++..+..-|.
T Consensus        90 Q~~L~~~re~E~qLr~rRD~LErrl~~l~~tie  122 (159)
T PF05384_consen   90 QVRLAMLREREKQLRERRDELERRLRNLEETIE  122 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555566666666666666666665555444

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=80.77  E-value=37  Score=34.51  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV  324 (338)
Q Consensus       289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr  324 (338)
                      .+|..+...++.+++.++.+.+.|++++++.+..+.
T Consensus       313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~  348 (498)
T TIGR03007       313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLR  348 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555555544444433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.37  E-value=22  Score=33.94  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHH
Q psy14557        223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKI  302 (338)
Q Consensus       223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerI  302 (338)
                      ++.++..|..+...-...+......++.+-+.++=..+|.+.|-.+        ||+    ..+.+..+..++..+|.-|
T Consensus         2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~E--------r~~----h~eeLrqI~~DIn~lE~iI   69 (230)
T PF10146_consen    2 KIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQE--------RMA----HVEELRQINQDINTLENII   69 (230)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH----HHHHHHHHHHHHHHHHHHH
Confidence            3567777777777788888888888888888888888888888533        221    2233344467777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        303 KDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       303 K~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      +.++..++..++.+..+.+++..+..
T Consensus        70 kqa~~er~~~~~~i~r~~eey~~Lk~   95 (230)
T PF10146_consen   70 KQAESERNKRQEKIQRLYEEYKPLKD   95 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666665555555554443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=80.35  E-value=45  Score=31.23  Aligned_cols=39  Identities=21%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLV  324 (338)
Q Consensus       286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~Lr  324 (338)
                      +=+..|..+.+.++.+....+++-..|++++..++..|.
T Consensus       176 ~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~  214 (237)
T PF00261_consen  176 EKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE  214 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555555555555555555555554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=80.02  E-value=34  Score=30.20  Aligned_cols=57  Identities=19%  Similarity=0.297  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        238 LKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIES  307 (338)
Q Consensus       238 Lq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEK  307 (338)
                      +..+..|+..++.+.+..+-.+..|.+.|.+.             .....+.+|+++++.++.++..|..
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~-------------el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNE-------------ELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444455555555566665666677766432             2334455666666666666666654

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
1v38_A	78	Solution Structure Of The Sterile Alpha Motif (Sam)		4e-04

>pdb|1V38|A Chain A, Solution Structure Of The Sterile Alpha Motif (Sam) Domain Of Mouse Samsn1 Length = 78

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          +E+ S  +LNGYE L+   +IKE  L  L I +PE RA++L+A + +
Sbjct: 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESL 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	3e-15
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	2e-10
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	3e-10
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	6e-10
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	6e-10
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	1e-09
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	1e-09
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	2e-09
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	2e-09
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	2e-09
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	2e-09
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	4e-09
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	8e-09
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	1e-08
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	1e-08
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	2e-08
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	2e-08
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	2e-08
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	3e-08
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	4e-08
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	9e-07
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	2e-04

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2 Length = 78

 Score = 69.0 bits (169), Expect = 3e-15
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
          +E+ S  +LNGYE L+   +IKE  L  L I +PE RA++L+A + +    S
Sbjct: 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS 76

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B Length = 86

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
           +    V NG++DLE   +I EEDL    + +P H+  +L  +Q+ 
Sbjct: 40 RYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLS 85

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens} Length = 83

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
          +A+ M     +   F   G+   E   +I  EDL  + +    H+ KILA+VQ M     
Sbjct: 23 RAIKMG---RYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQAK 79

Query: 63 P 63
          P
Sbjct: 80 P 80

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESS 70
          ++   F+  G+  L+   ++  EDL  + I    H+ KIL ++  M    S      +S
Sbjct: 36 QYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQSPTAMAS 94

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 81

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
           ++ M     +   F   GY  L     +  +D+  L I    H+ KIL ++Q M  
Sbjct: 15 DSIRMG---RYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRA 68

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens} Length = 101

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 12 EHMSVFVLNGYEDLESFCE--IKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDED 66
          ++ S  +LNG++D+       ++E+DL  + I +P+HR K+L A + + + ++   D
Sbjct: 43 QYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKVKALGYD 99

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Length = 117

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 17/81 (20%), Positives = 41/81 (50%)

Query: 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHP 285
            +  ++   +Q+L++   Q +  +      +  L EI+ L      Y++VG + +KT   
Sbjct: 10  AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKD 69

Query: 286 EVVVNLEKKVKSYEEKIKDIE 306
           + V  L++K+++ E ++  +E
Sbjct: 70  KAVAELKEKIETLEVRLNALE 90

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A Length = 149

 Score = 54.7 bits (131), Expect = 2e-09
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 12  EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60
           ++  V V NGYE+++   +I  EDL  + I    H+ K++ AV+ + E 
Sbjct: 93  QYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAEL 141

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 8/52 (15%), Positives = 25/52 (48%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
          ++   F+  GY  +E   ++  +D+  + +  P H+ +I  ++  + +  + 
Sbjct: 26 QYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQVNT 77

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2 Length = 94

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
          +A+ M+    +   F   GY  LE+   + ++DL  + I    H+ KIL++VQ M  
Sbjct: 34 QAIKMD---RYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT 87

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A Length = 82

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 3  KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
          +A+ M    ++   F   G+   +   ++  ED+  + +    H+ KIL ++QVM  
Sbjct: 19 EAIKMG---QYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRA 72

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens} Length = 100

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 15/61 (24%), Positives = 27/61 (44%)

Query: 12  EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEESSL 71
           ++   F  +G     +   +  E+L  L I    HR +IL  +Q   E  S D   +S++
Sbjct: 40  QYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDPKSDSAM 99

Query: 72  D 72
           +
Sbjct: 100 E 100

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens} Length = 82

 Score = 51.0 bits (122), Expect = 8e-09
 Identities = 8/48 (16%), Positives = 24/48 (50%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
          ++   F+  GY  +E   ++  +D+  + +  P H+ +I  ++  + +
Sbjct: 30 QYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 77

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens} Length = 90

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
           +   F   GY  LES   +  ED+  L I    H+ KI++++Q M  
Sbjct: 39 RYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRA 86

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} Length = 86

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 8/48 (16%), Positives = 24/48 (50%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
          ++   F+  GY  +E   ++  +D+  + +  P H+ +I  ++  + +
Sbjct: 35 QYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 82

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 12 EHMSVFVLNGYEDLE--SFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
          ++ +  + NG+++++      ++++DL  + ILN  HR +IL A+Q++    S 
Sbjct: 26 QYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSGPSS 79

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A Length = 82

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
           ++  F   G + +E   E+  EDL  + I  P H+ +IL ++Q  
Sbjct: 37 RYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF 82

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2 Length = 91

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
          +++  F  +G+  ++    I +  L  + I    HR +IL  +Q++  
Sbjct: 29 QYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILS 76

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens} Length = 103

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 12  EHMSVFVLNGYEDLE--SFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEE- 68
           ++ +  + NG+++++      ++++DL  + ILN  HR +IL A+Q++ +      D   
Sbjct: 36  QYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKMRPIGHDGYH 95

Query: 69  -SSLDE 73
            +S+ E
Sbjct: 96  PTSVAE 101

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 4  AVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
          ++ + +           G+  L     +    L    I    H  K+L+A ++      P
Sbjct: 32 SIGLPMYAGT---LSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGP 88

Query: 64 D 64
          +
Sbjct: 89 E 89

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens} Length = 148

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 12  EHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQ 55
           ++   F++NGY  ++   +I E +L N LKI    HR +ILA++ 
Sbjct: 102 DYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG 146

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B Length = 107

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 17/81 (20%), Positives = 37/81 (45%)

Query: 226 ELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHP 285
               +    +Q+ +   +Q +  +   + TQ  L E+ R       Y+S G + I+    
Sbjct: 5   HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKD 64

Query: 286 EVVVNLEKKVKSYEEKIKDIE 306
           E+   L++K+++ + + K IE
Sbjct: 65  ELTEELQEKLETLQLREKTIE 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.78
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.78
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	99.56
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	99.39
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	99.38
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	99.36
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	99.36
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	99.34
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	99.34
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	99.32
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	99.32
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	99.32
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	99.31
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	99.31
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	99.31
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	99.3
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	99.28
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	99.28
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	99.25
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	99.2
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	99.19
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	99.11
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	99.09
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	98.97
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	98.93
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	98.91
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	98.8
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	98.78
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	98.73
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	98.7
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	98.69
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	98.67
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	98.58
2y9u_A	69	Tumor protein 63; apoptosis, sterIle alpha motif,	98.56
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	98.47
2y9t_A	82	Tumor protein 63; apoptosis, sterIle alpha motif,	98.46
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	98.44
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	98.35
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	98.3
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	98.28
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	98.26
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	98.17
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	98.12
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	98.11
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	98.01
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	97.99
1oxj_A	173	RNA-binding protein smaug; SAM domain, PHAT domain	97.98
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	97.5
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	97.13
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	96.96
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	95.84
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	95.34
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	94.46
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	94.29
2l5y_A	150	Stromal interaction molecule 2; EF-hand, SAM domai	93.98
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	93.29
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	93.21
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.55
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	91.98
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.94
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.56
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.31
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	90.3
1dxs_A	80	P53-like transcription factor; P73 SAM-like domain	90.23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.16
2pnv_A	43	Small conductance calcium-activated potassium chan	88.85
2k60_A	150	Protein (stromal interaction molecule 1); EF-hand,	88.27
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	84.92
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	84.35
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	84.19
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.49
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	82.45
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	81.57
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.47
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	81.01

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.78  E-value=3e-18  Score=139.32  Aligned_cols=108  Identities=17%  Similarity=0.276  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHH
Q psy14557        223 AFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKI  302 (338)
Q Consensus       223 af~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerI  302 (338)
                      .++++..++..++++++.+.+|+..++++++++++|.+||+.||+|++||++||+|||..|+++++..|+++++.++.+|
T Consensus         7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i   86 (117)
T 2zqm_A            7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL   86 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            34455556666999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy14557        303 KDIESEKAIILVPALKIARYLVILIRLN  330 (338)
Q Consensus       303 K~LEKQkeyLEKqLeelQ~~LrElLr~~  330 (338)
                      +.|+++.+++++++++++.+|++++++.
T Consensus        87 ~~le~~~~~l~~~l~~lk~~l~~~~~~~  114 (117)
T 2zqm_A           87 NALERQEKKLNEKLKELTAQIQSALRPP  114 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999999999764

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.78  E-value=1.2e-18  Score=140.01  Aligned_cols=104  Identities=16%  Similarity=0.273  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHH
Q psy14557        224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIK  303 (338)
Q Consensus       224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK  303 (338)
                      ++++..++..++++++.+.+|++.++++++++++|.+||+.||+|++||++||+|||..|+++++..|+++++.++.+|+
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~   82 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            34455555569999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        304 DIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       304 ~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      +|+++.+++++++++++.+|++++
T Consensus        83 ~le~~~~~~~~~l~~lk~~l~~~~  106 (107)
T 1fxk_A           83 TIERQEERVMKKLQEMQVNIQEAM  106 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999865

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=99.56  E-value=1.2e-15  Score=118.95  Aligned_cols=61  Identities=34%  Similarity=0.489  Sum_probs=58.2

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      ..+|+.|+|++|.+.|+.|||+++++|++|.++||.+|||++|+||+|||.|++.|++.++
T Consensus        16 ~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~~~   76 (78)
T 1v38_A           16 QEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS   76 (78)
T ss_dssp             HHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhccc
Confidence            4689999999999999999999999999999999999999999999999999999998665

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=8.5e-14  Score=113.09  Aligned_cols=60  Identities=15%  Similarity=0.076  Sum_probs=57.1

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||+++++|..|.++||.+|||+++.||+|||.|++.|+...
T Consensus        27 ~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~~   86 (97)
T 2dl0_A           27 SDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPP   86 (97)
T ss_dssp             HHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHccc
Confidence            468999999999999999999999999999999999999999999999999999998754

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B

Probab=99.38  E-value=1.8e-13  Score=109.20  Aligned_cols=57  Identities=28%  Similarity=0.381  Sum_probs=54.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH   58 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~   58 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+
T Consensus        30 ~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~LK   86 (86)
T 2k4p_A           30 SAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK   86 (86)
T ss_dssp             HHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence            568999999999999999999999999999999999999999999999999999874

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=99.36  E-value=2.3e-13  Score=107.57  Aligned_cols=56  Identities=27%  Similarity=0.374  Sum_probs=53.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM   57 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L   57 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.|.||+|||.|++.|
T Consensus        27 ~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq~l   82 (82)
T 3hil_A           27 SEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQGF   82 (82)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999999999999999999999999864

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=99.36  E-value=2.4e-13  Score=108.28  Aligned_cols=58  Identities=16%  Similarity=0.336  Sum_probs=55.1

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.|.||+|||.|++.|+.
T Consensus        25 ~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr~   82 (86)
T 3kka_C           25 SEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD   82 (86)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC-
T ss_pred             HHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999865

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.34  E-value=4e-13  Score=104.92  Aligned_cols=60  Identities=23%  Similarity=0.264  Sum_probs=57.2

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus        11 ~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~~~   70 (81)
T 1ucv_A           11 GDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQL   70 (81)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999754

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=99.34  E-value=4e-13  Score=107.81  Aligned_cols=58  Identities=26%  Similarity=0.335  Sum_probs=55.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.|.||+|||.|++.|+.
T Consensus        29 ~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr~   86 (90)
T 3h8m_A           29 GEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRA   86 (90)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999875

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=99.32  E-value=5.6e-13  Score=103.85  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=56.3

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+..
T Consensus        15 ~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~   73 (82)
T 1b4f_A           15 DEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQ   73 (82)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999863

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=99.32  E-value=5e-13  Score=106.82  Aligned_cols=60  Identities=17%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus        19 ~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~   78 (91)
T 1x40_A           19 KDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM   78 (91)
T ss_dssp             HHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhc
Confidence            358999999999999999999999999999999999999999999999999999999754

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=6.7e-13  Score=105.09  Aligned_cols=60  Identities=15%  Similarity=0.300  Sum_probs=56.9

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus        16 ~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~~~   75 (88)
T 2e8n_A           16 SEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQV   75 (88)
T ss_dssp             HHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHhh
Confidence            458999999999999999999999999999999999999999999999999999999643

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=99.31  E-value=3.9e-13  Score=105.72  Aligned_cols=60  Identities=15%  Similarity=0.305  Sum_probs=56.8

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+..-
T Consensus        20 ~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~~~   79 (82)
T 2kso_A           20 SEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQV   79 (82)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999998643

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=99.31  E-value=6.7e-13  Score=106.36  Aligned_cols=59  Identities=25%  Similarity=0.355  Sum_probs=56.3

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+..
T Consensus        30 ~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~~   88 (94)
T 1b0x_A           30 GDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQ   88 (94)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999998853

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=7.3e-13  Score=102.90  Aligned_cols=59  Identities=22%  Similarity=0.354  Sum_probs=56.1

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHh--hcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESF--CEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~--~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|||++|.+.|..|||+++++|  ..|.++||.+|||+.+.||+|||.|++.|+..
T Consensus        16 ~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~~   76 (80)
T 2eam_A           16 GQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSG   76 (80)
T ss_dssp             HHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999999  89999999999999999999999999999864

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-12  Score=106.32  Aligned_cols=64  Identities=22%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDE   65 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~   65 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+.......
T Consensus        30 ~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~~~~p   93 (100)
T 2kg5_A           30 AVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEGSLDP   93 (100)
T ss_dssp             HHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCCCSCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcccCCC
Confidence            4689999999999999999999999999999999999999999999999999999997655444

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=107.58  Aligned_cols=61  Identities=25%  Similarity=0.421  Sum_probs=57.1

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhh--cCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFC--EIKEEDLNYLKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~--~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      ..+|+.|||++|.+.|..|||++++++.  .|.++||.+|||+.+.||+|||.|++.|+....
T Consensus        33 ~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~~~~   95 (101)
T 2lmr_A           33 GEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKVKA   95 (101)
T ss_dssp             HHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSSCCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHhccc
Confidence            4689999999999999999999999987  999999999999999999999999999987543

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=99.28  E-value=1.1e-12  Score=102.46  Aligned_cols=60  Identities=25%  Similarity=0.280  Sum_probs=54.5

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||.|++.|..|.++||.+|||+.+.||+|||.|++.|+..-
T Consensus        19 ~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~   78 (83)
T 2qkq_A           19 GEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQA   78 (83)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC----
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999999999988643

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=2.1e-12  Score=104.33  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=57.3

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+.+.||+|||.|++.|+...
T Consensus        26 ~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~   85 (99)
T 2eao_A           26 DDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQI   85 (99)
T ss_dssp             HHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999999999999999999999999999754

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}

Probab=99.20  E-value=5.8e-12  Score=102.58  Aligned_cols=58  Identities=22%  Similarity=0.389  Sum_probs=55.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHh--hcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESF--CEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~--~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.|||++|.+.|..|||++++++  ..|.++||.+|||+.+.||+|||.|++.|++
T Consensus        26 ~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~   85 (103)
T 2ke7_A           26 GQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK   85 (103)
T ss_dssp             THHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence            568999999999999999999999999  7999999999999999999999999999985

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=99.19  E-value=5.4e-12  Score=108.75  Aligned_cols=59  Identities=29%  Similarity=0.369  Sum_probs=56.6

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|||++|.+.|..|||++++.+..|.++||.+|||+.+.||+|||.|++.|++.
T Consensus        83 ~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~~  141 (149)
T 3sei_A           83 AVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAEL  141 (149)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999875

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=99.11  E-value=2.5e-11  Score=104.63  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=55.6

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.|||++|.+.|..|||+ ++.|..|.++||.+|||++|.||+|||.|++.|+..+
T Consensus        14 ~~WL~~lgL~~Y~~~F~~~g~d-~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~~~   72 (149)
T 3sei_A           14 SQWLTAFQLQLYAPNFISAGYD-LPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSIPD   72 (149)
T ss_dssp             HHHHHTTTCGGGHHHHHHTTCC-HHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHCCcHHHHHHHHHcCCC-HHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHhcc
Confidence            3579999999999999999999 9999999999999999999999999999999988753

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=99.09  E-value=1.7e-11  Score=104.96  Aligned_cols=59  Identities=22%  Similarity=0.402  Sum_probs=56.3

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhh--cCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFC--EIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~--~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|||++|.+.|..|||+++++|.  .|.++||.+|||++|.||+||+.|++.|+..
T Consensus        18 ~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L~~~   78 (148)
T 2kiv_A           18 GQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM   78 (148)
T ss_dssp             HHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHCSCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999998  9999999999999999999999999999875

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=98.97  E-value=2.2e-10  Score=88.66  Aligned_cols=56  Identities=20%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..||+.|||.+|.+.|..||| |++.+..|.++||.+|||+ +.||+|||.|++.++.
T Consensus         6 ~~wL~~lgL~~Y~~~F~~~~i-d~e~l~~lt~~DL~~lGI~-~G~RkkIl~ai~~~~~   61 (74)
T 3k1r_B            6 ETFLASLHMEDFAALLRQEKI-DLEALMLCSDLDLRSISVP-LGPREKILGAVRRRRQ   61 (74)
T ss_dssp             HHHHHTTTCGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCc-CHHHHhHCCHHHHHHcCCC-cchHHHHHHHHHHHHH
Confidence            468999999999999999999 5999999999999999999 9999999999998775

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A

Probab=98.93  E-value=3.6e-10  Score=90.82  Aligned_cols=61  Identities=13%  Similarity=0.056  Sum_probs=55.4

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      ..||.+|++++|.+.|+.|||..+|.|.+|..++|.||||+...||.|||.||..|+....
T Consensus        19 ~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~~~   79 (85)
T 1ow5_A           19 QLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR   79 (85)
T ss_dssp             HHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHHHh
Confidence            3589999999999999999999999999999999999999999999999999999987443

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=98.91  E-value=3.3e-10  Score=96.99  Aligned_cols=54  Identities=31%  Similarity=0.439  Sum_probs=51.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQ   55 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~   55 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++|| .++||+.+.||+|||.|++
T Consensus        92 ~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~  146 (148)
T 2kiv_A           92 AEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG  146 (148)
T ss_dssp             HHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHh
Confidence            46899999999999999999999999999999997 8999999999999999986

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=98.80  E-value=2.1e-09  Score=83.50  Aligned_cols=58  Identities=14%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.+||++|.+.|..|||+... |..|.++||.+|||+.+.||.||+.|++.|+..
T Consensus        16 ~~WL~~lgl~~Y~~~F~~~~idg~~-Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~   73 (81)
T 3bq7_A           16 AAWLEHLSLCEYKDIFTRHDIRGSG-LLHLERRDLKDLGVTKVGHMKRILCGIKELSRS   73 (81)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCHHH-HTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCHHH-HCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999998877 679999999999999999999999999998764

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=98.78  E-value=2.8e-09  Score=81.89  Aligned_cols=59  Identities=19%  Similarity=0.172  Sum_probs=52.1

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.+||.+|.+.|..||++-. .|..|.++||.+|||+.+.||.||+.|++.|+...
T Consensus        11 ~~WL~~lgl~~Y~~~F~~~~idg~-~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~~~   69 (76)
T 2f3n_A           11 GDWLESIHLGEHRDRFEDHEIEGA-HLPALTKEDFVELGVTRVGHRENIERALRQLDGSR   69 (76)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCGG-GGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC----
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCHH-HHccCCHHHHHHcCCCChhHHHHHHHHHHHHHHHH
Confidence            468999999999999999999887 78899999999999999999999999999988643

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=98.73  E-value=5.4e-09  Score=80.34  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCcc
Q psy14557          2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDED   66 (338)
Q Consensus         2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~   66 (338)
                      ..+|+.+  ||++|.+.|..|+++ -+.|-.|.++||.+|||+.+.||.||+.|++.|+....+.+.
T Consensus        13 ~~WL~~l~~gl~~Y~~~F~~~~i~-G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~~l~~   78 (80)
T 3bs5_B           13 VDWMKGLDDCLQQYIKNFEREKIS-GDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGLET   78 (80)
T ss_dssp             HHHHHTSCGGGGGGHHHHHHHTCC-HHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHhhhHHHHHHHHHHcCCC-HHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccc
Confidence            3578888  699999999999996 788889999999999999999999999999999876555443

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=98.70  E-value=8.5e-09  Score=78.15  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.+||.+|.+.|..|+++- +.|-.|.++||.+|||+.+.||.||+.|++.|+.
T Consensus        13 ~~WL~~~gl~~y~~~F~~~~i~g-~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~   69 (74)
T 2gle_A           13 SHWLVGLSLDQYVSEFSAQNISG-EQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKM   69 (74)
T ss_dssp             HHHHHHTTTHHHHHHHTTTTCCH-HHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCH-HHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999977 7777999999999999999999999999999874

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=98.69  E-value=2.5e-07  Score=77.09  Aligned_cols=106  Identities=13%  Similarity=0.193  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCch--------------------hhhhhcc-ccc
Q psy14557        224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQ--PTTN--------------------TYESVGR-MFI  280 (338)
Q Consensus       224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLP--eDTk--------------------VYKSVGR-MFV  280 (338)
                      +.+|+..+...+++++.+.+++++++..+.+.+.+.+.|+.|+  ++..                    ||-.||- .||
T Consensus         3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v   82 (133)
T 1fxk_C            3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence            3556666666899999999999999999999999999999987  5555                    6667994 999


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        281 KTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       281 ltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      ..+.++.++-|+++++.++..++.++++...+..++..++..|+++++.
T Consensus        83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~  131 (133)
T 1fxk_C           83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA  131 (133)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999864

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=98.67  E-value=8.1e-08  Score=82.17  Aligned_cols=112  Identities=19%  Similarity=0.247  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccC-CCchhhhhhc--------------------
Q psy14557        221 DKAFAELQIKMMDTKQKLKIQDIQVENF---KKNKHHTQLTLTEIKRLQ-PTTNTYESVG--------------------  276 (338)
Q Consensus       221 qKaf~ELQ~KlieTQQQLq~V~~Qiqql---ErelR~aeLTlkELekLP-eDTkVYKSVG--------------------  276 (338)
                      .+.+.+++..+...+++++.+.++++++   ...+.++..++++|+.++ ++..+|.++|                    
T Consensus         8 ~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG   87 (151)
T 2zdi_C            8 NKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVG   87 (151)
T ss_dssp             TTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeC
Confidence            3445555555666999999999999999   999999999999999999 8999999977                    


Q ss_pred             -ccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557        277 -RMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTH  332 (338)
Q Consensus       277 -RMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~  332 (338)
                       ..||..+.++.++-|+++++.++..++.+++..+.++.++...+..|+++++....
T Consensus        88 ~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~  144 (151)
T 2zdi_C           88 SGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSM  144 (151)
T ss_dssp             TTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             CCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             48999999999999999999999999999999999999999999999999976544

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=2e-08  Score=77.92  Aligned_cols=59  Identities=15%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.+  ||++|.+.|..|+++ -+.|-.|.++||.+|||+.+.||.+|+.|++.|+...
T Consensus        17 ~~WL~~l~~gl~~Y~~~F~~~~I~-G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~   77 (83)
T 2ean_A           17 VDWMKGLDDCLQQYIKNFEREKIS-GDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALN   77 (83)
T ss_dssp             HHHHTTSCGGGTTTHHHHHHHTCC-HHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHCCCC-HHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            3578888  699999999999996 7888899999999999999999999999999998643

>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A

Probab=98.56  E-value=2.5e-08  Score=76.93  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=54.6

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.|++.+|.+.|...||.+++...+|.-+||..+||+. +||+|||.+++.|+.
T Consensus         8 ~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~-ghqkkIl~siq~lr~   64 (69)
T 2y9u_A            8 VSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQ   64 (69)
T ss_dssp             HHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCCh-hhHHHHHHhHHHHHh
Confidence            468999999999999999999999999999999999999998 999999999999874

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=98.47  E-value=1e-07  Score=72.85  Aligned_cols=57  Identities=11%  Similarity=0.106  Sum_probs=52.8

Q ss_pred             hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.+  |+.+|.+.|..|+++- +.|-.|.++||.+|||+.+.||.+|+.|++.|+.
T Consensus        12 ~~WL~~~~~gl~~y~~~F~~~~I~G-~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~   70 (78)
T 3bs7_A           12 LKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRL   70 (78)
T ss_dssp             HHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHCCCCH-HHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHh
Confidence            3578886  9999999999999987 8888999999999999999999999999999875

>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}

Probab=98.46  E-value=5.2e-08  Score=77.46  Aligned_cols=58  Identities=16%  Similarity=0.139  Sum_probs=55.3

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|++.+|.+.|...||.+++...+|.-+||..+||+. +||+|||.+++.|+..
T Consensus        10 ~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~-gHqkkIl~siq~lr~~   67 (82)
T 2y9t_A           10 VSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQL   67 (82)
T ss_dssp             HHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCCh-hhHHHHHhhHHHHHHH
Confidence            468999999999999999999999999999999999999998 9999999999998863

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=98.44  E-value=1.1e-07  Score=76.78  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=50.1

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      .+|+.|+|.+|++.|..++|   +.|..|.|+||.++||+...||+|||.|++.|++.
T Consensus        23 ~WL~sLrLhKY~~~F~~~~~---~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~~   77 (88)
T 2d3d_A           23 MWLKSLRLHKYSDALSGTPW---IELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY   77 (88)
T ss_dssp             HHHHHTTCGGGHHHHTTSCH---HHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchhHHHHhcCCH---HHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHHH
Confidence            57899999999999998755   55779999999999999999999999999999863

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=98.35  E-value=2.6e-07  Score=75.67  Aligned_cols=57  Identities=11%  Similarity=0.106  Sum_probs=53.8

Q ss_pred             hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.+  |+.+|.+.|..|+++- +.+-.|.++||.+|||+.+.||.+|+.+++.|+.
T Consensus        32 ~~WL~~~~~gl~~Y~~~F~~~~I~G-~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~   90 (106)
T 3bs5_A           32 LKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRL   90 (106)
T ss_dssp             HHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchHHHHHHHHHcCccH-HHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            3688999  9999999999999998 8888999999999999999999999999999985

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=98.30  E-value=3.2e-07  Score=86.50  Aligned_cols=59  Identities=19%  Similarity=0.099  Sum_probs=55.4

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      .+|+.|||.+|.+.|..||+| -+.+..|.++||.+|||+++.||.+|+.|++.|++...
T Consensus        97 ~WL~~IGL~QY~~~F~~~~iD-g~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~L~~~~~  155 (265)
T 3tad_C           97 RWLDDIGLPQYKTQFDEGRVD-GRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNF  155 (265)
T ss_dssp             HHHHHHTCGGGHHHHHHHTCC-HHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHcCcHHHHHHHHHcCCC-HHHhcccCHHHHHHcCCCcHHhHHHHHHHHHHHhhcCC
Confidence            579999999999999999999 58999999999999999999999999999999998644

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A

Probab=98.28  E-value=2.9e-07  Score=76.05  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=50.2

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      .+|+.|+|.+|++.|..++|   +.|-.|.|+||.++||+...+|+|||.|++.|++.
T Consensus        36 ~WLksLrLhKY~~~F~~~~~---~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~~   90 (101)
T 2es6_A           36 MWLKSLRLHKYSDALSGTPW---IELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY   90 (101)
T ss_dssp             HHHHTTTCCCTHHHHTTSCH---HHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCcchHHHHccCCH---HHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHHH
Confidence            57899999999999999866   55679999999999999999999999999999874

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=98.26  E-value=7.1e-07  Score=71.66  Aligned_cols=64  Identities=16%  Similarity=0.097  Sum_probs=56.1

Q ss_pred             hhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCcccCC
Q psy14557          3 KAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDEES   69 (338)
Q Consensus         3 ~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~~~   69 (338)
                      .+|+.|  ++.+|  .|..|++. -+.+-.|.++||.+|||+...||.+||.||+.|+..-.+.+.|+.
T Consensus        21 ~WL~~l~~~l~~Y--~F~~~~I~-G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~~~l~~e~l   86 (91)
T 1wwv_A           21 TWLRGLDDSLQDY--PFEDWQLP-GKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQTENS   86 (91)
T ss_dssp             HHHHHHCHHHHTS--CHHHHCCC-HHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSCSSTTTC
T ss_pred             HHHHhcCCccccc--cHHhcCcc-HHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHhhccchhcc
Confidence            578866  89999  79999995 888899999999999999999999999999999987666665553

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.17  E-value=1.2e-06  Score=69.51  Aligned_cols=59  Identities=15%  Similarity=0.100  Sum_probs=54.3

Q ss_pred             hhhhhhhhh--hhhHhhhhhcCcccHHHhhcCCcccccc--cCCCChHHHHHHHHHHhhhhhcC
Q psy14557          2 SKAVDMELK--KEHMSVFVLNGYEDLESFCEIKEEDLNY--LKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         2 ~~~~e~i~L--~ey~s~~l~NGyddLe~~~~i~e~dL~e--lgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      ..+|+.||+  .+|.+.|..| .-|-+.|-.|.++||.+  |||+...||+||+.|++.|+..-
T Consensus        26 ~~WL~~~gl~~~~Y~~~F~~~-~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~   88 (91)
T 1v85_A           26 VLWLEQLGPWASLYRDRFLSE-RVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGP   88 (91)
T ss_dssp             HHHHHHHCGGGHHHHHHHHHT-TCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHcCCCHHHHHHHHHHh-CCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            467999999  9999999998 78899999999999998  99999999999999999998643

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=9.3e-07  Score=71.59  Aligned_cols=58  Identities=14%  Similarity=0.078  Sum_probs=53.2

Q ss_pred             hhhhhhhhhhh--hHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKE--HMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~e--y~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.+||.+  |.+.|..|+.+-- .|-.|.++||.+|||....||.||+.|++.|+..
T Consensus        36 ~~WL~~lgl~~~~y~~~F~~~~I~G~-~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~   95 (103)
T 2e8o_A           36 CSFLRRGGFEEPVLLKNIRENEITGA-LLPCLDESRFENLGVSSLGERKKLLSYIQRLVQI   95 (103)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHTTCCTT-TTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCChHHHHHHHHHcCCCHH-HHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            46899999999  9999999999775 7779999999999999999999999999999864

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.4e-06  Score=73.75  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=50.0

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      .+|+.++|.+|.+.|...+|   +.|..|.|+||.++||+...||+|||.|++.|++.
T Consensus        54 ~WL~sLrL~KY~~~F~~~~~---d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~~  108 (119)
T 2b6g_A           54 MWLKSLRLHKYSDALSGTPW---IELIYLDDETLEKKGVLALGARRKLLKAFGIVIDY  108 (119)
T ss_dssp             HHHHHHTCHHHHHHHTTSCH---HHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCChhHHHHHccCCH---HHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHhh
Confidence            57899999999999988755   56789999999999999999999999999998874

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=98.01  E-value=2.4e-06  Score=80.60  Aligned_cols=57  Identities=18%  Similarity=0.045  Sum_probs=52.6

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccHHHhhcCCccccc-ccCCCChHHHHHHHHHHhhhhhc
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLN-YLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~-elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..|+.+||.+|...|..|+++.-..+ .|.++||. +|||++|-||+||+.|++.|...
T Consensus        25 ~WLe~~GL~~Y~~~f~~n~~dG~~Ll-~lt~~dLe~eLGI~nplHRkKL~laI~el~~~   82 (265)
T 3tad_C           25 SWLAEQGLGSYLSSGKHWIISGQTLL-QASQQDLEKELGIKHSLHRKKLQLALQALGSE   82 (265)
T ss_dssp             HHHHHTTCCTTHHHHTTTCSCSHHHH-HSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCHHHHHHHHHHhCCchHHHH-hCCHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            46889999999999999999998855 99999995 99999999999999999999874

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=97.99  E-value=4.1e-06  Score=81.30  Aligned_cols=60  Identities=15%  Similarity=0.121  Sum_probs=55.6

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHhhhhhcCCC
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQVMHEYESP   63 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~~L~~~~~~   63 (338)
                      ..|+.|||.||.+.|..|++ |-+.+-.+...|| ..|||+++-||++|+.|+++|+....+
T Consensus       168 ~WL~dIGLpQY~~~F~~~~V-DgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~~~d  228 (334)
T 3tac_B          168 EWLPSLGLPQYRSYFMECLV-DARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLNYD  228 (334)
T ss_dssp             THHHHTTCGGGHHHHHHTTC-CHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred             hhccccChHHhHHHHHhcCc-chhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhcCCC
Confidence            57899999999999999999 6699999999999 799999999999999999999986554

>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13

Probab=97.98  E-value=2.8e-06  Score=75.99  Aligned_cols=55  Identities=15%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             hhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcC
Q psy14557          3 KAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYE   61 (338)
Q Consensus         3 ~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~   61 (338)
                      .+|+.|+|.+|++.|...||+   .|..|.|+||.++||+ ..||+|||.|++.|++-.
T Consensus        12 ~WLksLrLhKY~~~F~~~~~e---~~~~LTdedL~~~GVT-~GARrKIL~aIq~Lrer~   66 (173)
T 1oxj_A           12 LWLKSLRLHKYIELFKNMTYE---EMLLITEDFLQSVGVT-KGASHKLALCIDKLKERA   66 (173)
T ss_dssp             HHHHHTTCGGGGGGGTTCCHH---HHTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchhHHHHccCCHH---HHHhcCHHHHHHCCCc-hHHHHHHHHHHHHHHHHh
Confidence            578999999999999999887   5689999999999999 599999999999999744

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=97.50  E-value=3.5e-05  Score=62.50  Aligned_cols=58  Identities=9%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccc--cCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNY--LKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~e--lgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      ..+|+.+|+.+|.+.| .|  -|=+.|-.|.++||.+  |||....||+||+.|++.|+..-.
T Consensus        26 ~~WL~~~Gl~~Y~~~F-~~--IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~   85 (97)
T 2d8c_A           26 ADWLLENAMPEYCEPL-EH--FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHH   85 (97)
T ss_dssp             HHHHHHTTCTTTTTTT-TT--CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCHHHHHHH-Hc--CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhH
Confidence            3678999999999999 67  7778888999999999  999999999999999999986443

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=97.13  E-value=0.00032  Score=55.71  Aligned_cols=56  Identities=20%  Similarity=0.240  Sum_probs=49.0

Q ss_pred             hhhhhhh-hhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDME-LKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i-~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|..+ |+.+|...|..|.-+ -+.|-.|.++|| .+||| .-.+|.||+.|++.|+.
T Consensus        23 ~~wL~~l~gl~~y~~~F~~~~Id-G~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~   80 (89)
T 1kw4_A           23 SNFIRELPGCQDYVDDFIQQEID-GQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKE   80 (89)
T ss_dssp             HHHHHTSTTCGGGHHHHHHTTCC-HHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHCcChHHHHHHHHHhCcc-HHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            3688899 999999999999864 566668999999 89999 69999999999999875

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=96.96  E-value=0.00053  Score=66.64  Aligned_cols=61  Identities=20%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             hhhh-hhhhh-hHhhhhhcCcccHHHhhcCCccccc-ccCCCChHHHHHHHHHHhhhhhcCCCCc
Q psy14557          4 AVDM-ELKKE-HMSVFVLNGYEDLESFCEIKEEDLN-YLKILNPEHRAKILAAVQVMHEYESPDE   65 (338)
Q Consensus         4 ~~e~-i~L~e-y~s~~l~NGyddLe~~~~i~e~dL~-elgI~dp~hR~rlL~Av~~L~~~~~~~~   65 (338)
                      .|+. +||++ |...|..|..+- ..+..+.++||. +|||.+|-||+||+-|++.+....+++.
T Consensus        47 WLe~~iGmp~~Yv~~~r~nvkSG-~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~~sp~~  110 (334)
T 3tac_B           47 WLELWLGMPAWYVAACRANVKSG-AIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSA  110 (334)
T ss_dssp             HHHHTTCCCHHHHHHHHHHCCSH-HHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHhcChHHHHHHHHHHccch-HHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCC
Confidence            4677 89987 999999999998 567789999995 9999999999999999999988766554

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=95.84  E-value=0.093  Score=42.24  Aligned_cols=88  Identities=11%  Similarity=0.233  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        233 DTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIKDIESEKAII  312 (338)
Q Consensus       233 eTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK~LEKQkeyL  312 (338)
                      +++-.+++++.-.++++-..++.+.+.-=+..+..+.++|++....+|...|++.++.++--.=..+-+|.+|.++++.+
T Consensus         8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekei   87 (99)
T 3aei_A            8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEI   87 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555666777778888888888899999999999999999999999999999888888888999999988888


Q ss_pred             HHHHHHHH
Q psy14557        313 LVPALKIA  320 (338)
Q Consensus       313 EKqLeelQ  320 (338)
                      .+++..+.
T Consensus        88 me~ls~l~   95 (99)
T 3aei_A           88 MEELSKLR   95 (99)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhhc
Confidence            77776543

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=95.34  E-value=0.29  Score=39.05  Aligned_cols=105  Identities=13%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHH
Q psy14557        222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEK  301 (338)
Q Consensus       222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEer  301 (338)
                      |.+.++..+..+...++..+...+..++.++...+..+.++.... +  +==-||.-.=......++++.+.+++.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g-~--~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~   79 (112)
T 1l8d_A            3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAK-G--KCPVCGRELTDEHREELLSKYHLDLNNSKNT   79 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-E--ECTTTCCEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C--CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555566666666666666666666666667776521 1  1111233222223457888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        302 IKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       302 IK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      +..|+.+...+++.++.+...++++++.
T Consensus        80 i~~l~~~i~~l~~~~~~l~~~~~~~~~~  107 (112)
T 1l8d_A           80 LAKLIDRKSELERELRRIDMEIKRLTPL  107 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998888855543

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=94.46  E-value=0.038  Score=44.16  Aligned_cols=100  Identities=9%  Similarity=0.025  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE--IKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE--LekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      ++...|..+|+++..+.++++.+..++...+..+.+..+...+  +-.+=.  +||=..-.--+....++-++.+++.++
T Consensus        10 ~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG--~vfv~~~~~ea~~~L~~~~e~ie~~i~   87 (117)
T 2zqm_A           10 AMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVG--TLIVKTTKDKAVAELKEKIETLEVRLN   87 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEET--TEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhh--HHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            4555677777777777777777777777777666666655432  111112  222222233345555666667777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        297 SYEEKIKDIESEKAIILVPALKIA  320 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLeelQ  320 (338)
                      .++.+++.++++.+.+++.+.+..
T Consensus        88 ~le~~~~~l~~~l~~lk~~l~~~~  111 (117)
T 2zqm_A           88 ALERQEKKLNEKLKELTAQIQSAL  111 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777766543

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A

Probab=94.29  E-value=0.041  Score=43.72  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=47.0

Q ss_pred             hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      .+||+.+  |+.+|.+.|..|.-|= +.|-.|.+.|| .++||. -.+|.||..+++.|+..+.
T Consensus        23 ~~wl~~~~~g~~~y~~~F~~~eIDG-~aLL~Lt~~dl~~~mgik-lGpalKi~~~I~~lk~~~~   84 (89)
T 1pk1_B           23 IQYIESNDNSLAVHGDLFRKHEIDG-KALLRLNSERMMKYMGLK-LGPALKICNLVNKVNGRDH   84 (89)
T ss_dssp             HHHHHHHCGGGGGGHHHHHHTTCCH-HHHHTCCHHHHHHHSCCC-HHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHccchHHHHHHHHHcCcCh-HHHhcCCHHHHHHccCCC-ccHHHHHHHHHHHHHcccc
Confidence            4688888  8999999999887654 44559999998 579996 8999999999999987654

>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}

Probab=93.98  E-value=0.021  Score=49.91  Aligned_cols=52  Identities=19%  Similarity=0.114  Sum_probs=39.6

Q ss_pred             hhhhh-hhhhhhHhhhhhcCcccHHHhhcCCccc----ccccCCCChHHHHHHH-HHHh
Q psy14557          3 KAVDM-ELKKEHMSVFVLNGYEDLESFCEIKEED----LNYLKILNPEHRAKIL-AAVQ   55 (338)
Q Consensus         3 ~~~e~-i~L~ey~s~~l~NGyddLe~~~~i~e~d----L~elgI~dp~hR~rlL-~Av~   55 (338)
                      +.|.. ++|++|.+.|..|.-+=-... .|...+    +..|||.+|.||+||. .|..
T Consensus        88 ~WL~~~v~LpqY~~~Fr~~~IdG~~Lp-rL~~~~~~~L~~~LGI~~~~hR~Kl~lkald  145 (150)
T 2l5y_A           88 QWLIEFVELPQYEKNFRDNNVKGTTLP-RIAVHEPSFMISQLKISDRSHRQKLQLKALD  145 (150)
T ss_dssp             HHHHHHTCCTTSHHHHHHHHCSSSTTT-TCCSSSCCSTTTTSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHcCCCHHHhh-hhhhcchHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45655 589999999999877755444 555544    5699999999999996 5544

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=93.29  E-value=0.21  Score=39.28  Aligned_cols=98  Identities=10%  Similarity=0.052  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE--IKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE--LekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      ++.+.|..+|+++..+.++++.+..++...+..+.+..+...+  +-.+=.+.=|-+++  --+....+.-++.++++++
T Consensus         5 ~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~--~e~~~~L~~~~e~i~~~i~   82 (107)
T 1fxk_A            5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAK--DELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccH--HHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888888888888888777777777665443  22222233333333  3345566667777778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy14557        297 SYEEKIKDIESEKAIILVPALK  318 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLee  318 (338)
                      .++.+++.++++.+.+++.+.+
T Consensus        83 ~le~~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           83 TIERQEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888887777776653

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=93.21  E-value=1  Score=43.36  Aligned_cols=42  Identities=12%  Similarity=0.148  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      .+.+.|++++...+.+|+.||.+.+.|+.+++++..+++++-
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            577889999999999999999999999999999999998753

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.55  E-value=0.43  Score=52.27  Aligned_cols=42  Identities=19%  Similarity=0.209  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILI  327 (338)
Q Consensus       286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElL  327 (338)
                      .-+.+|+++++.+++++.++.+.++.++++.+++++.|++.+
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv 1025 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334556666666666666666666666666555555555433

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.98  E-value=0.095  Score=42.04  Aligned_cols=53  Identities=23%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             Chhhhhhhhhhhh-HhhhhhcCcccHHHhhcCCcccc-cccCCCChHHHHHHHHHHh
Q psy14557          1 MSKAVDMELKKEH-MSVFVLNGYEDLESFCEIKEEDL-NYLKILNPEHRAKILAAVQ   55 (338)
Q Consensus         1 ~~~~~e~i~L~ey-~s~~l~NGyddLe~~~~i~e~dL-~elgI~dp~hR~rlL~Av~   55 (338)
                      ++++|..|||.+| .+.|..|+-|---. -+|.+++| +++|+ .+-|++||+..+.
T Consensus        23 Vs~~Lr~igL~e~vv~~F~~e~IDG~lL-~~L~ee~L~edf~l-s~Lq~kKi~~fI~   77 (84)
T 2dkz_A           23 VSKSLRFIGLSEDVISFFVTEKIDGNLL-VQLTEEILSEDFKL-SKLQVKKIMQFIN   77 (84)
T ss_dssp             HHHHGGGTCCCHHHHHHHHTTTCCHHHH-HHCCHHHHHHTSCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcHHHHHHHHHHccchHHH-HhCCHHHHHhhcCC-CHHHHHHHHHHHh
Confidence            4689999999985 79999999876544 49999999 56999 8999999999874

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.94  E-value=2.3  Score=46.65  Aligned_cols=37  Identities=16%  Similarity=0.084  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        285 PEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIAR  321 (338)
Q Consensus       285 deI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~  321 (338)
                      ..+.++|++++..++++...|+.|...|+..+.+.++
T Consensus      1015 ~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1015 DKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444566666666666666666666666654444444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.56  E-value=6.2  Score=35.84  Aligned_cols=55  Identities=9%  Similarity=0.085  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhccCCCchhhhhhcc
Q psy14557        222 KAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE-----------IKRLQPTTNTYESVGR  277 (338)
Q Consensus       222 Kaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE-----------LekLPeDTkVYKSVGR  277 (338)
                      +.+.+++.++..++.++..+..++..++++++..+.-..+           |..+ .+.+-|.++.+
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v-~~~kE~~aL~k   97 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI-KSERELRSLNI   97 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCHHHHHHHHH
Confidence            3344444444444444444444444444444433333332           3333 25566666654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.31  E-value=3.6  Score=37.40  Aligned_cols=42  Identities=10%  Similarity=0.134  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        220 GDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE  261 (338)
Q Consensus       220 LqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE  261 (338)
                      +++...++...+.++..++..+..++..++..+..++...+.
T Consensus        23 l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~   64 (256)
T 3na7_A           23 LEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSK   64 (256)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555555444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=90.30  E-value=1.6  Score=44.91  Aligned_cols=90  Identities=9%  Similarity=0.013  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSY  298 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkiesl  298 (338)
                      .+.+.+.+|..++.+.++.-+.+.+....+.-.+|..+-...+++.      +            +.+|-++|+.++..+
T Consensus        61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdN------t------------ynE~S~ELRRrIqyL  122 (562)
T 3ghg_A           61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDN------T------------YNRVSEDLRSRIEVL  122 (562)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHH------H------------HHHTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccch------h------------HHHHHHHHHHHHHHH
Confidence            5566666666666666555555555555555444443333333322      2            345556777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        299 EEKIKDIESEKAIILVPALKIARYLVIL  326 (338)
Q Consensus       299 EerIK~LEKQkeyLEKqLeelQ~~LrEl  326 (338)
                      +++|..--.+..-|+..++++..+|+.+
T Consensus       123 KekVdnQlsnIrvLQsnLedq~~kIQRL  150 (562)
T 3ghg_A          123 KRKVIEKVQHIQLLQKNVRAQLVDMKRL  150 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766666677777766666666654

>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A

Probab=90.23  E-value=0.12  Score=41.18  Aligned_cols=57  Identities=19%  Similarity=0.195  Sum_probs=50.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..||.++|+..|.+-|--.|++++--+-.+.=+||-++.|. -+||.||-.++..+++
T Consensus        10 ~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIp-e~~R~kIWk~l~e~~q   66 (80)
T 1dxs_A           10 VSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDLKQ   66 (80)
T ss_dssp             HHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC-TTTHHHHHHHHHHC--
T ss_pred             HHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHHhCCCC-HHHHHHHHhhHHHhcc
Confidence            46899999999999999999999999999999999999998 5689999988877654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.16  E-value=1.6  Score=42.97  Aligned_cols=27  Identities=11%  Similarity=0.116  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        220 GDKAFAELQIKMMDTKQKLKIQDIQVE  246 (338)
Q Consensus       220 LqKaf~ELQ~KlieTQQQLq~V~~Qiq  246 (338)
                      ++..+.+++.++..+++.+......++
T Consensus       454 l~~e~~~~~~~i~~l~~~~~~~~~~l~  480 (597)
T 3oja_B          454 LEAEVNELRAEVQQLTNEQIQQEQLLQ  480 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444443333333

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=88.85  E-value=0.91  Score=32.14  Aligned_cols=34  Identities=12%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        284 HPEVVVNLEKKVKSYEEKIKDIESEKAIILVPAL  317 (338)
Q Consensus       284 KdeI~eeLeEkieslEerIK~LEKQkeyLEKqLe  317 (338)
                      .-+++.+|.++.+.+|+||.+||.|.+.|...++
T Consensus         7 mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~   40 (43)
T 2pnv_A            7 MYDMISDLNERSEDFEKRIVTLETKLETLIGSIH   40 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999998888877765

>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}

Probab=88.27  E-value=0.15  Score=44.48  Aligned_cols=53  Identities=13%  Similarity=0.090  Sum_probs=40.1

Q ss_pred             hhh-hhhhhhhhHhhhhhcCcccHHHhhcCCccc--c--cccCCCChHHHHHHH-HHHhh
Q psy14557          3 KAV-DMELKKEHMSVFVLNGYEDLESFCEIKEED--L--NYLKILNPEHRAKIL-AAVQV   56 (338)
Q Consensus         3 ~~~-e~i~L~ey~s~~l~NGyddLe~~~~i~e~d--L--~elgI~dp~hR~rlL-~Av~~   56 (338)
                      +.| ..++|++|.+.|-.|.-+=..... |...+  +  ..|||.++.||+||- .|...
T Consensus        88 ~WL~~~v~LpqY~~~Fr~~~I~G~~Lpr-La~~~~~~L~~~LgI~~~~hRqKl~lkald~  146 (150)
T 2k60_A           88 QWLITYVELPQYEETFRKLQLSGHAMPR-LAVTNTTMTGTVLKMTDRSHRQKLQLKALDT  146 (150)
T ss_dssp             HHHHHHHCCTTHHHHHHHHCCSTTHHHH-HSSCHHHHCSSCSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHcCCCHHHHHh-hccccHHHHHHhcCCCCHHHHHHHHHHHHhH
Confidence            345 445899999999999888766664 44443  3  899999999999994 66654

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.15  E-value=7.4  Score=29.87  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy14557        289 VNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRLNTHC  333 (338)
Q Consensus       289 eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~~  333 (338)
                      ..+++.+..+..+|..|+...+..+.++..++..|.+.-+..+.|
T Consensus        37 ~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~~~   81 (81)
T 1ic2_A           37 KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDC   81 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC--
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            456677777777777777778888888888888887766555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.92  E-value=12  Score=36.17  Aligned_cols=100  Identities=19%  Similarity=0.069  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---chhh-------hhhccc-ccccCchHHHHHHHHHH
Q psy14557        227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPT---TNTY-------ESVGRM-FIKTPHPEVVVNLEKKV  295 (338)
Q Consensus       227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeD---TkVY-------KSVGRM-FVltdKdeI~eeLeEki  295 (338)
                      +|..-+..+++-+...++.....+.....+-+..+...--+.   +..=       +.+.++ =+.+..+...++++...
T Consensus       358 ~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (487)
T 3oja_A          358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDW  437 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence            344444455555555555555555555555555544332221   0000       001100 01223444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        296 KSYEEKIKDIESEKAIILVPALKIARYLVIL  326 (338)
Q Consensus       296 eslEerIK~LEKQkeyLEKqLeelQ~~LrEl  326 (338)
                      +...++|+.++++.+++++.+.+....+.++
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (487)
T 3oja_A          438 DMYQHKETQLAEENARLKKLNGEADLALASA  468 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence            6666666666666666666666665555543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=84.35  E-value=6.9  Score=42.86  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=14.7

Q ss_pred             cceeEeeccccccccccCCCCC
Q psy14557        120 PNFHFVFDIFPGICRTSNQNDG  141 (338)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~  141 (338)
                      -+-|||.-|-|.--..++.-|.
T Consensus       676 t~phfvRCIkPN~~k~p~~fd~  697 (1184)
T 1i84_S          676 TNPNFVRCIIPNHEKRAGKLDA  697 (1184)
T ss_dssp             SEEEECCEECCCSSCCSSCCCH
T ss_pred             cCCCceeeeCCCCcCCCCcccH
Confidence            3568988888876655555443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=84.19  E-value=22  Score=31.54  Aligned_cols=38  Identities=16%  Similarity=0.281  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        286 EVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYL  323 (338)
Q Consensus       286 eI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~L  323 (338)
                      +++.+|+.++..+..+++.+......++.....+++.|
T Consensus        90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl  127 (168)
T 3o0z_A           90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDML  127 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555544444444444444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.49  E-value=12  Score=45.73  Aligned_cols=47  Identities=21%  Similarity=0.186  Sum_probs=35.2

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        282 TPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       282 tdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      .|+.+-+.+++++.+.++.+++..+.+.+.+++++++++++..++++
T Consensus      2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ 2056 (3245)
T 3vkg_A         2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIR 2056 (3245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888888888888777777777777777777777777766554

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=82.45  E-value=8.9  Score=30.26  Aligned_cols=96  Identities=8%  Similarity=-0.002  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL-QPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL-PeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      ..+.+.+.++..++..+++....+..++..++..+......    ... |-=......-++.-+......-+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~----g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~   81 (112)
T 1l8d_A            6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA----KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLA   81 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777888888888888888888888888877776442    222 2110111111112233345566677788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q psy14557        297 SYEEKIKDIESEKAIILVPAL  317 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLe  317 (338)
                      .+..++..+++..+.|+.++.
T Consensus        82 ~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           82 KLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888877776

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=81.57  E-value=26  Score=34.66  Aligned_cols=108  Identities=10%  Similarity=0.025  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCchhhhhhcccccccCchHHHHHHHHHHH
Q psy14557        219 CGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRL--QPTTNTYESVGRMFIKTPHPEVVVNLEKKVK  296 (338)
Q Consensus       219 ELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekL--PeDTkVYKSVGRMFVltdKdeI~eeLeEkie  296 (338)
                      .|+..|...|..+...=+.|..+..+++.+..+......+.+..-.-  ++....+..+.+ .. +..-+-+..|+..+.
T Consensus        24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq-~s-kkml~~~~~~e~~~~  101 (409)
T 1m1j_C           24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQ-KS-KKIIEEIIRYENTIL  101 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHH-HH-HHHHHHHHHTHHHHH
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHH-HH-HHHHHHHHHHHHHhc
Confidence            67788888877776666777777777777777777666666666331  111122222211 00 001111222333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        297 SYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       297 slEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      ..+..|..|+.+.+.++.++++++..|.+++.
T Consensus       102 ~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~  133 (409)
T 1m1j_C          102 AHENTIQQLTDMHIMNSNKITQLKQKIAQLES  133 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.47  E-value=11  Score=36.83  Aligned_cols=31  Identities=3%  Similarity=-0.005  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        227 LQIKMMDTKQKLKIQDIQVENFKKNKHHTQL  257 (338)
Q Consensus       227 LQ~KlieTQQQLq~V~~QiqqlErelR~aeL  257 (338)
                      ++..+.+....++.+...+.+.++.++..+-
T Consensus       454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~  484 (597)
T 3oja_B          454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHA  484 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444555555444444444443333

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=81.01  E-value=35  Score=34.49  Aligned_cols=44  Identities=14%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        220 GDKAFAELQIKMMDTK-------QKLKIQDIQVENFKKNKHHTQLTLTEIK  263 (338)
Q Consensus       220 LqKaf~ELQ~KlieTQ-------QQLq~V~~QiqqlErelR~aeLTlkELe  263 (338)
                      +++.+.+|..++.++.       +-++.+.......+.++.....+.++..
T Consensus        98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~  148 (464)
T 1m1j_B           98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN  148 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            4444444444444443       3344455555555555555444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1ucva_	81	a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal	5e-09
d1v38a_	78	a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (M	2e-08
d1b0xa_	72	a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mou	2e-08
d1x40a1	78	a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human	1e-07
d1ow5a_	60	a.60.1.2 (A:) Serine/threonine-protein kinase ste1	3e-06
d1dxsa_	57	a.60.1.2 (A:) C-terminal domain of p73 {Human (Hom	9e-06
d2f3na1	64	a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat	4e-05
d1b4fa_	74	a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens)	1e-04

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 5e-09
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESP 63
           +   F   GY  L     +  +D+  L I    H+ KIL ++Q M    + 
Sbjct: 21 RYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTS 72

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES 62
          E+ S  +LNGYE L+   +IKE  L  L I +PE RA++L+A + +    S
Sbjct: 26 EYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS 76

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
           +   F   GY  LE+   + ++DL  + I    H+ KIL++VQ M  
Sbjct: 18 RYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT 65

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 10/48 (20%), Positives = 23/48 (47%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE 59
          +++  F  +G+  ++    I +  L  + I    HR +IL  +Q++  
Sbjct: 22 QYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILS 69

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          +++  F+       E    + ++ L  L +     R KIL   +  
Sbjct: 14 QYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSF 59

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 9e-06
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 11 KEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
             +  F   G + +     +  EDL  LKI   ++R  I   +Q +
Sbjct: 12 PNCIEYFTSQGLQSIYHLQNLTIEDLGALKI-PEQYRMTIWRGLQDL 57

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]} Length = 64

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM 57
          EH   F  +   +      + +ED   L +    HR  I  A++ +
Sbjct: 20 EHRDRFEDHEI-EGAHLPALTKEDFVELGVTRVGHRENIERALRQL 64

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 12 EHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY 60
          ++   F   G+   +   ++  ED+  + +    H+ KIL ++QVM   
Sbjct: 20 QYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQ 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	99.74
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	99.5
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	99.44
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	99.41
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	99.37
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	99.33
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	99.31
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	99.28
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	99.04
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	98.89
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	98.73
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	97.98
d2d8ca1	85	Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu	97.96
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	97.62
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	97.24
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	91.19
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	86.86
d1rg6a_	67	C-terminal domain of p63 {Human (Homo sapiens) [Ta	84.3
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	84.13

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=3.2e-18  Score=137.92  Aligned_cols=105  Identities=16%  Similarity=0.279  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhhhhcccccccCchHHHHHHHHHHHHHHHHHH
Q psy14557        224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKVKSYEEKIK  303 (338)
Q Consensus       224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkVYKSVGRMFVltdKdeI~eeLeEkieslEerIK  303 (338)
                      +++...+++.++++++.+.+|+++++.++++++++++||+.+|+|+++||.||.+||..|+++++.+|+++++.++.+|+
T Consensus         3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~   82 (107)
T d1fxka_           3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK   82 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            55666677779999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        304 DIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       304 ~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      +|+++.+++++++++.+.+|+++++
T Consensus        83 ~l~~q~~~l~~~l~~~~~~l~~~~k  107 (107)
T d1fxka_          83 TIERQEERVMKKLQEMQVNIQEAMK  107 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998764

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-15  Score=110.56  Aligned_cols=55  Identities=20%  Similarity=0.189  Sum_probs=52.4

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM   57 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L   57 (338)
                      ..+|+.|||++|.+.|..|||++++.|.+|.++||.+|||+ ++||+|||.||+.|
T Consensus         3 ~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~lt~eDL~~lGI~-~~hr~kilk~i~~L   57 (57)
T d1dxsa_           3 VSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIP-EQYRMTIWRGLQDL   57 (57)
T ss_dssp             HHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCC-TTTHHHHHHHHHHC
T ss_pred             HHHHHHCCcHHHHHHHHHccCCcHHHHHHhhHHHHHHcCCC-HHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999999997 59999999999875

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.9e-14  Score=109.56  Aligned_cols=61  Identities=34%  Similarity=0.489  Sum_probs=58.0

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      ..+|+.|||++|.+.|..|||+++++|..|.++||.+|||+++.||+|||.|++.|++..+
T Consensus        16 ~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~~hr~kil~ai~~L~~~~s   76 (78)
T d1v38a_          16 QEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGPS   76 (78)
T ss_dssp             HHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHCCHHHHHHHHHHcCccchHHHccCCHHHHhHcCCCCHHHHHHHHHHHHHhhcCCC
Confidence            4689999999999999999999999999999999999999999999999999999997554

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.8e-14  Score=109.05  Aligned_cols=59  Identities=17%  Similarity=0.228  Sum_probs=56.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|||++|.+.|..|||+++++|..|.++||.++||++++||+|||.|++.|+..
T Consensus        12 ~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~ghr~kil~~i~~Lr~~   70 (78)
T d1x40a1          12 KDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSK   70 (78)
T ss_dssp             HHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCchHHHHHHHHHcCCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999999999999999999999999874

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=8.2e-14  Score=101.46  Aligned_cols=57  Identities=14%  Similarity=0.068  Sum_probs=54.9

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH   58 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~   58 (338)
                      ..+|++|||++|.+.|..|||.|++.|..|.++||.+|||+.++||.|||.|++.|+
T Consensus         4 ~~wL~~lgL~~Y~~~F~~~~~i~~~~l~~l~~~dL~~lGI~~~ghr~ril~~i~~Lk   60 (60)
T d1ow5a_           4 QLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ   60 (60)
T ss_dssp             HHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCcCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999999999999999999999999874

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2.9e-13  Score=101.43  Aligned_cols=58  Identities=26%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|++|||++|.+.|..|||++++.|..|.++||.+|||+++.||+||+.|++.|+.
T Consensus         8 ~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~l~~~dL~~lGI~~~ghr~ki~~ai~~Lr~   65 (72)
T d1b0xa_           8 GDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT   65 (72)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCcHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999875

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.8e-13  Score=102.99  Aligned_cols=59  Identities=24%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEY   60 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~   60 (338)
                      ..+|+.|||.+|.+.|..|||++++.|..|.++||.+|||+.+.||+||+.|++.|+..
T Consensus        11 ~~WL~~lgL~qY~~~F~~~gi~~~~~L~~lt~~dL~~lGI~~~ghr~kIl~~i~~Lk~~   69 (81)
T d1ucva_          11 GDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQ   69 (81)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCccHHHHHHHHHcCCchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999874

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.2e-13  Score=99.27  Aligned_cols=58  Identities=19%  Similarity=0.295  Sum_probs=55.9

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      ..+|+.|||++|.+.|..|||++++.|..|.++||.+|||+++.||.||+.|++.|+.
T Consensus        10 ~~WL~~lgL~~Y~~~F~~~~idg~~~l~~l~~~~L~~lGI~~~ghr~ril~~i~~Lr~   67 (74)
T d1b4fa_          10 DEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRA   67 (74)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999975

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.04  E-value=2.8e-11  Score=89.22  Aligned_cols=54  Identities=15%  Similarity=0.153  Sum_probs=49.2

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      +.+|+.|||.+|.+.|..|||++   +..|.|+||.+|||+ +.||+|||.|++.|++
T Consensus         9 ~~WL~~l~L~~Y~~~F~~~~~d~---l~~lt~~dL~~lGI~-~GhRkkil~~I~~Lke   62 (62)
T d1oxja1           9 GLWLKSLRLHKYIELFKNMTYEE---MLLITEDFLQSVGVT-KGASHKLALCIDKLKE   62 (62)
T ss_dssp             HHHHHHTTCGGGGGGGTTCCHHH---HTTCCHHHHHHTTCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHhCCHHH---HHhCCHHHHHHcCCC-HHHHHHHHHHHHHhcC
Confidence            57899999999999999999975   568999999999997 6899999999999874

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=4.4e-10  Score=81.35  Aligned_cols=55  Identities=20%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM   57 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L   57 (338)
                      ..+|+++||++|.+.|..||++ -+.+-.|.++||.+|||+++.||.||+.|++.|
T Consensus        10 ~~wL~~~gl~~y~~~F~~~~i~-g~~L~~l~~~dL~~lGi~~~g~r~~il~~i~~L   64 (64)
T d2f3na1          10 GDWLESIHLGEHRDRFEDHEIE-GAHLPALTKEDFVELGVTRVGHRENIERALRQL   64 (64)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCC-GGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHCCCc-HHHhhcCCHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence            4689999999999999999995 677889999999999999999999999999865

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.4e-09  Score=79.73  Aligned_cols=65  Identities=14%  Similarity=0.069  Sum_probs=57.5

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhhcCCCCccc
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHEYESPDEDE   67 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~~~~~~~~~   67 (338)
                      ..+|+.+|+.+|...|..|+++- +.|-.|.++||.+|||..+.||.+|+.+++.|+...++.+.+
T Consensus        13 ~~WL~~~gl~~y~~~F~~~~I~G-~~Ll~L~~~dL~~lgI~~~ghr~~il~~i~~Lk~~~~~~~~e   77 (78)
T d1wwva1          13 ATWLRGLDDSLQDYPFEDWQLPG-KNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQTE   77 (78)
T ss_dssp             HHHHHHHCHHHHTSCHHHHCCCH-HHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSCSSTT
T ss_pred             HHHHHHcchHHHHHHHHHcCCCc-HHHHHhhHHHHHHhCCCCHHHHHHHHHHHHHHHHhccccccC
Confidence            35789999999999999999955 777799999999999999999999999999999876665543

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.98  E-value=5.5e-05  Score=60.65  Aligned_cols=106  Identities=13%  Similarity=0.195  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--Cchhhhh--------------------hcc-ccc
Q psy14557        224 FAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQP--TTNTYES--------------------VGR-MFI  280 (338)
Q Consensus       224 f~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPe--DTkVYKS--------------------VGR-MFV  280 (338)
                      +.||..++...+++++.+.+++..++..+.+.+.+.+.|+.+++  +..++=+                    ||. .||
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~v   82 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeee
Confidence            56667777777777777777777777777777777777777653  2233333                    443 478


Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy14557        281 KTPHPEVVVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIRL  329 (338)
Q Consensus       281 ltdKdeI~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr~  329 (338)
                      ..+.++.++-++.+++.++..++.|+++...++.++.+++..+++++..
T Consensus        83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~~a  131 (133)
T d1fxkc_          83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA  131 (133)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999998864

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=1.2e-06  Score=67.37  Aligned_cols=58  Identities=9%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccc--cCCCChHHHHHHHHHHhhhhhcCC
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNY--LKILNPEHRAKILAAVQVMHEYES   62 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~e--lgI~dp~hR~rlL~Av~~L~~~~~   62 (338)
                      .++|+.+||.+|.+.|  |.. |-+.+-.|.++||.+  |||....||++||.|++.|+....
T Consensus        20 ~~WL~~~gl~~Y~~~F--~~I-dG~~Ll~Lt~~dL~~~~Lgi~~~~~rk~il~~I~~Lk~~~~   79 (85)
T d2d8ca1          20 ADWLLENAMPEYCEPL--EHF-TGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHH   79 (85)
T ss_dssp             HHHHHHTTCTTTTTTT--TTC-CHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSC
T ss_pred             HHHHHHCcHHHHHHHH--Hhc-cHHHHHHCCHHHHhhcCccCcChhHHHHHHHHHHHHHHHhh
Confidence            4689999999999999  776 667778999999998  999999999999999999987544

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.62  E-value=2e-05  Score=57.21  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=49.8

Q ss_pred             hhhhhhh-hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhh
Q psy14557          2 SKAVDME-LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMH   58 (338)
Q Consensus         2 ~~~~e~i-~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~   58 (338)
                      .++|+.+ |+++|...|..|+.+ =+.+-.|.++||.++|+....||.+|+.+++.|+
T Consensus        14 ~~wL~~~~~~~~y~~~F~~~~Id-G~~Ll~Lt~~~L~~~~~~~~g~r~~i~~~I~~Lk   70 (70)
T d1kw4a_          14 SNFIRELPGCQDYVDDFIQQEID-GQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK   70 (70)
T ss_dssp             HHHHHTSTTCGGGHHHHHHTTCC-HHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCcHHHHHHHHHcCcc-HHHHHHccHHHHHHHcCCchHHHHHHHHHHHHhC
Confidence            4689998 799999999999986 5555689999999999999999999999999874

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.24  E-value=0.00011  Score=52.40  Aligned_cols=55  Identities=13%  Similarity=0.055  Sum_probs=48.2

Q ss_pred             hhhhhhh--hhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhh
Q psy14557          2 SKAVDME--LKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVM   57 (338)
Q Consensus         2 ~~~~e~i--~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L   57 (338)
                      ..+|+.+  ++++|.+.|..|..+=-..+ .|.++||.++|+.-..||.||+.|++.|
T Consensus         7 ~~wL~~~~~~~~~y~~~F~~~~IdG~~Ll-~Lt~edL~~~~~~~~G~r~ki~~~I~~L   63 (63)
T d1pk3a1           7 IQYIESNDNSLAVHGDLFRKHEIDGKALL-RLNSEMMMKYMGLKLGPALKICNLVNKV   63 (63)
T ss_dssp             HHHHHHHCGGGGGGHHHHHHTTCCHHHHT-TCCHHHHHHHHCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHccccHHHHHHHHHHhCcCHHHHH-hcCHHHHHHhcCCCchHHHHHHHHHHhC
Confidence            4688888  89999999999998765555 6999999998888999999999999865

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.19  E-value=0.21  Score=38.19  Aligned_cols=100  Identities=10%  Similarity=0.073  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCCchhhhhhcccccccCchHHHHHHHHHH
Q psy14557        218 TCGDKAFAELQIKMMDTKQKLKIQDIQVENFKKNKHHTQLTLTE--IKRLQPTTNTYESVGRMFIKTPHPEVVVNLEKKV  295 (338)
Q Consensus       218 eELqKaf~ELQ~KlieTQQQLq~V~~QiqqlErelR~aeLTlkE--LekLPeDTkVYKSVGRMFVltdKdeI~eeLeEki  295 (338)
                      .++-..|..+|+++..+.++++.+.+|+...+..+...+....+  +=.+-.+.=|=+.++.  +.....+=++.|+.++
T Consensus         4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e--~~~~l~~~~e~l~~~i   81 (107)
T d1fxka_           4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDE--LTEELQEKLETLQLRE   81 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHH--HHHHHHHHHHHHHHHH
Confidence            35667789999999999999999999999888888877655433  1112122222222222  3345566678888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy14557        296 KSYEEKIKDIESEKAIILVPALKI  319 (338)
Q Consensus       296 eslEerIK~LEKQkeyLEKqLeel  319 (338)
                      +.++..++.++++.+.+++.+.++
T Consensus        82 ~~l~~q~~~l~~~l~~~~~~l~~~  105 (107)
T d1fxka_          82 KTIERQEERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888764

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.86  E-value=0.63  Score=36.08  Aligned_cols=98  Identities=20%  Similarity=0.256  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh-hhhhcc-c--------ccccCchH-------------H
Q psy14557        231 MMDTKQKLKIQDIQVENFKKNKHHTQLTLTEIKRLQPTTNT-YESVGR-M--------FIKTPHPE-------------V  287 (338)
Q Consensus       231 lieTQQQLq~V~~QiqqlErelR~aeLTlkELekLPeDTkV-YKSVGR-M--------FVltdKde-------------I  287 (338)
                      +.++..+++.+..+++.+..++...+....|+..+-+.-.. -...|+ +        ||.....+             +
T Consensus         3 L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~v   82 (133)
T d1fxkc_           3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeee
Confidence            34466666666666666666666666666666655322222 222333 1        22221111             1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14557        288 VVNLEKKVKSYEEKIKDIESEKAIILVPALKIARYLVILIR  328 (338)
Q Consensus       288 ~eeLeEkieslEerIK~LEKQkeyLEKqLeelQ~~LrElLr  328 (338)
                      ...+++-++-++.|++.|+++.+.++++++..+.++.++..
T Consensus        83 E~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~  123 (133)
T d1fxkc_          83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSP  123 (133)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23455566666666666666666666666666666665543

>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.30  E-value=0.24  Score=36.42  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=51.2

Q ss_pred             hhhhhhhhhhhhHhhhhhcCcccHHHhhcCCcccccccCCCChHHHHHHHHHHhhhhh
Q psy14557          2 SKAVDMELKKEHMSVFVLNGYEDLESFCEIKEEDLNYLKILNPEHRAKILAAVQVMHE   59 (338)
Q Consensus         2 ~~~~e~i~L~ey~s~~l~NGyddLe~~~~i~e~dL~elgI~dp~hR~rlL~Av~~L~~   59 (338)
                      +.||-++|+..|.+.|--.|..++..+..+.=+||-++-|.. +||.+|-.++.-+++
T Consensus         7 ~sfLt~LGc~~~id~F~~q~l~~v~qLe~~sleDL~~mkIp~-~~r~~IWK~l~e~kq   63 (67)
T d1rg6a_           7 VSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPE-QFRHAIWKGILDHRQ   63 (67)
T ss_dssp             HHHHHHTTCCSSHHHHHHHTCCSGGGGSSCCHHHHHTTTCCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHhcChHHHHHHHHHccchhHHHHhhcCHHHHHcCcCcH-HHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999998876 699999998876654

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=84.13  E-value=6.7  Score=29.30  Aligned_cols=35  Identities=11%  Similarity=-0.064  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy14557        298 YEEKIKDIESEKAIILVPALKIARYLVILIRLNTH  332 (338)
Q Consensus       298 lEerIK~LEKQkeyLEKqLeelQ~~LrElLr~~~~  332 (338)
                      +.++.+.|..+.+.++.++++++.++.+++-.+.-
T Consensus        69 l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPN  103 (110)
T d1seta1          69 LIARGKALGEEAKRLEEALREKEARLEALLLQVPL  103 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            33444555555555666667777777777766543